Query 011572
Match_columns 483
No_of_seqs 31 out of 33
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 10:56:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ut7_A No apical meristem prot 95.5 0.0035 1.2E-07 55.9 1.0 125 263-398 26-170 (171)
2 3ulx_A Stress-induced transcri 91.4 0.088 3E-06 47.3 2.5 121 263-394 24-169 (174)
3 1ich_A TNF-1, tumor necrosis f 81.7 0.64 2.2E-05 39.7 2.2 15 50-64 53-67 (112)
4 3ezq_A Tumor necrosis factor r 80.6 0.74 2.5E-05 39.5 2.2 14 50-63 48-61 (115)
5 3oq9_A Tumor necrosis factor r 78.6 0.48 1.6E-05 38.5 0.4 15 50-64 40-54 (86)
6 1wyl_A NEDD9 interacting prote 62.2 6.2 0.00021 32.6 3.5 36 228-275 13-48 (116)
7 1bkr_A Spectrin beta chain; fi 61.3 7.3 0.00025 31.8 3.8 52 228-312 9-60 (109)
8 1wyq_A Spectrin beta chain, br 53.3 11 0.00036 31.8 3.5 50 228-310 13-62 (127)
9 1bhd_A Utrophin; calponin homo 53.2 9.4 0.00032 31.7 3.2 52 228-312 14-65 (118)
10 1fad_A Protein (FADD protein); 52.1 7.2 0.00024 30.6 2.2 16 50-65 53-68 (99)
11 2d87_A Smoothelin splice isofo 50.6 11 0.00038 31.8 3.2 51 228-311 13-63 (128)
12 1wxp_A THO complex subunit 1; 49.4 8.5 0.00029 31.3 2.3 15 50-64 56-70 (110)
13 2d88_A Protein mical-3; all al 49.4 6.1 0.00021 32.9 1.4 52 228-312 15-66 (121)
14 2of5_A Death domain-containing 49.2 8.1 0.00028 32.2 2.2 15 50-64 63-77 (114)
15 2o71_A Death domain-containing 48.6 8.4 0.00029 32.2 2.2 15 50-64 63-77 (115)
16 2of5_H Leucine-rich repeat and 46.2 10 0.00034 31.3 2.3 15 50-64 52-66 (118)
17 2d89_A EHBP1 protein; all alph 45.5 8.5 0.00029 31.9 1.7 52 228-312 15-66 (119)
18 2yqf_A Ankyrin-1; death domain 44.4 11 0.00039 30.5 2.3 15 50-64 57-71 (111)
19 2ets_A Hypothetical protein; s 43.0 51 0.0018 28.8 6.3 52 13-64 9-64 (128)
20 1c53_A Cytochrome C553; electr 42.4 26 0.0009 25.1 3.8 50 225-281 1-51 (79)
21 3ezq_B Protein FADD; apoptosis 40.5 13 0.00045 31.4 2.2 16 50-65 45-60 (122)
22 3v1a_A Computational design, M 36.6 31 0.0011 26.0 3.4 29 34-62 16-44 (48)
23 2hfi_A Hypothetical protein YP 32.5 55 0.0019 28.5 4.8 50 15-64 4-57 (131)
24 1c75_A Cytochrome C-553; heme, 32.1 36 0.0012 23.9 3.0 43 225-271 1-43 (71)
25 2huj_A LIN2004 protein; hypoth 31.3 1E+02 0.0036 27.2 6.4 49 16-64 21-73 (140)
26 1yzm_A FYVE-finger-containing 28.4 45 0.0015 25.4 3.1 28 33-60 16-43 (51)
27 3zwl_E Eukaryotic translation 27.6 22 0.00076 26.8 1.3 22 41-63 5-26 (50)
28 4djb_A E4-ORF3; adenovirus pro 25.3 35 0.0012 30.3 2.3 16 50-65 38-53 (130)
29 1z0k_B FYVE-finger-containing 24.9 54 0.0018 26.3 3.1 28 33-60 34-61 (69)
30 1z0j_B FYVE-finger-containing 24.8 54 0.0018 25.7 3.0 27 33-59 23-49 (59)
31 2d9e_A Peregrin; four-helix bu 24.7 62 0.0021 26.6 3.6 47 24-70 68-116 (121)
32 1xrd_A LH-1, light-harvesting 23.6 22 0.00077 27.3 0.7 12 312-324 3-14 (52)
33 2gf5_A FADD protein; death dom 23.5 29 0.00099 30.5 1.5 15 50-64 137-151 (191)
34 1wku_A Alpha-actinin 3; calpon 22.9 66 0.0023 29.3 3.8 36 228-275 146-181 (254)
35 1cno_A Cytochrome C552; electr 20.9 59 0.002 23.6 2.5 49 224-279 4-52 (87)
36 1khc_A DNA cytosine-5 methyltr 20.1 53 0.0018 28.5 2.4 34 30-64 90-127 (147)
No 1
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=95.46 E-value=0.0035 Score=55.93 Aligned_cols=125 Identities=25% Similarity=0.502 Sum_probs=76.3
Q ss_pred CchhhHH-HHHhhhcCcccC---cccccCCcccCCCCChhhhhhhhhccchhhhhhhhhhhhhhhhhcccccccCCCCCC
Q 011572 263 KDSLLFN-AVNARAQGKRVG---IPHCEGAATTKSPWNATELFDLALLEGETIREWLFFDKHRKAFESGTRKQRSLPDHS 338 (483)
Q Consensus 263 KDg~LFa-AL~ak~qgk~vg---ip~Cegaat~kspwna~elfdl~~legetirewlffdkprrafesgnrkqRslpdy~ 338 (483)
.|-=|.. -|..|+.|...- |+++. .-...||+=|+.. . .|+ +||+||-.-.|.+..|.|..|.- .
T Consensus 26 TDeELv~~YL~~K~~g~~~~~~~I~e~D--iy~~~Pw~Lp~~~---~-~g~--~ewyFFs~r~~k~~~g~R~~R~t---~ 94 (171)
T 1ut7_A 26 TDEELMVQYLCRKAAGYDFSLQLIAEID--LYKFDPWVLPNKA---L-FGE--KEWYFFSPRDRKYPNGSRPNRVA---G 94 (171)
T ss_dssp CHHHHHHHTHHHHHTTCCCSSCCSEECC--GGGSCGGGHHHHS---S-SCS--SEEEEEEECCC-------CCEEE---T
T ss_pred ChHHHHHHHHHHHhcCCCCCCCeEeecc--cccCChhHhhchh---h-cCC--ccEEEEeccccccCCCCcccccC---C
Confidence 4555665 488999998765 44443 4567999877753 2 344 79999998888999999999975 2
Q ss_pred CCcchhhHH--HHHH--HhcCcccc--cccCCCCCC-CcceeeEEEEecCc---------cceeeeeeeeeccccc
Q 011572 339 GRGWHESRK--LVMK--EFGGQKRS--YYMDPQPSD-GLEWHLYEYEIIGF---------DAYALYRLEVKLASEK 398 (483)
Q Consensus 339 grgwhesrk--qvmk--~~gglkrs--yymdpqp~~-~~ewhlyeyein~~---------da~alyrle~k~~d~k 398 (483)
+==||-.-+ .|+. ..-|.|++ ||..-.|.+ .-.|-|.||.|... +.+.|+|+-.|....+
T Consensus 95 ~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~~~ 170 (171)
T 1ut7_A 95 SGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQ 170 (171)
T ss_dssp TEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC----
T ss_pred CCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCCCC
Confidence 223765422 1211 23366664 687655543 57899999999754 5788999887765443
No 2
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=91.44 E-value=0.088 Score=47.33 Aligned_cols=121 Identities=27% Similarity=0.527 Sum_probs=73.9
Q ss_pred CchhhHH-HHHhhhcCcccC---cccccCCcccCCCCChhhhhhhhhccchhhhhhhhhhhhhhhhhcccccccCCCCCC
Q 011572 263 KDSLLFN-AVNARAQGKRVG---IPHCEGAATTKSPWNATELFDLALLEGETIREWLFFDKHRKAFESGTRKQRSLPDHS 338 (483)
Q Consensus 263 KDg~LFa-AL~ak~qgk~vg---ip~Cegaat~kspwna~elfdl~~legetirewlffdkprrafesgnrkqRslpdy~ 338 (483)
.|-=|.. -|.-|+.|...- |+++. .....||+=|+.. . .|+ +||+||-.-.|.+..|.|..|.- .
T Consensus 24 TDeELV~~YL~~K~~g~~~~~~~I~evD--vy~~~Pw~Lp~~~---~-~g~--~ewYFFs~r~~ky~~g~R~nR~t---~ 92 (174)
T 3ulx_A 24 TDDELVEHYLCRKAAGQRLPVPIIAEVD--LYKFDPWDLPERA---L-FGA--REWYFFTPRDRKYPNGSRPNRAA---G 92 (174)
T ss_dssp CHHHHHHHTHHHHHHTCCCSSSCCEECC--GGGSCGGGSGGGC---S-SCS--SEEEEEEECCC-----CCSCEEE---T
T ss_pred CHHHHHHHHHHHHhcCCCCCcCeeeecc--cccCCchhhhhhh---c-cCC--ceEEEEeccccccCCCCCceeec---C
Confidence 4555554 577888887543 44443 4467899877653 2 354 69999987778899999998874 2
Q ss_pred CCcchhhHH--HHHH--HhcCcccc--cccCCCCCC-CcceeeEEEEecCc--------------cceeeeeeeeec
Q 011572 339 GRGWHESRK--LVMK--EFGGQKRS--YYMDPQPSD-GLEWHLYEYEIIGF--------------DAYALYRLEVKL 394 (483)
Q Consensus 339 grgwhesrk--qvmk--~~gglkrs--yymdpqp~~-~~ewhlyeyein~~--------------da~alyrle~k~ 394 (483)
+==||-.-+ .|.. ..-|.||+ ||..-.|.+ .-.|-|.||.|... |.+.|+|+=.|.
T Consensus 93 ~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~ 169 (174)
T 3ulx_A 93 NGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169 (174)
T ss_dssp TEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESC
T ss_pred CceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcC
Confidence 223664322 2321 23466774 787666543 46799999999764 456777776553
No 3
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=81.71 E-value=0.64 Score=39.73 Aligned_cols=15 Identities=27% Similarity=0.570 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhh
Q 011572 50 LEEQVNQILREWNSE 64 (483)
Q Consensus 50 LEeQvhQmLREWkAE 64 (483)
++||++||||.|+--
T Consensus 53 l~Eq~yqmLr~W~~~ 67 (112)
T 1ich_A 53 LREAQYSMLATWRRR 67 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 889999999999965
No 4
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=80.63 E-value=0.74 Score=39.47 Aligned_cols=14 Identities=43% Similarity=0.757 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHh
Q 011572 50 LEEQVNQILREWNS 63 (483)
Q Consensus 50 LEeQvhQmLREWkA 63 (483)
++||++||||.|+-
T Consensus 48 ~~Eq~~qlLr~W~~ 61 (115)
T 3ezq_A 48 TAEQKVQLLRNWHQ 61 (115)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 56999999999985
No 5
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=78.57 E-value=0.48 Score=38.50 Aligned_cols=15 Identities=33% Similarity=0.415 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhh
Q 011572 50 LEEQVNQILREWNSE 64 (483)
Q Consensus 50 LEeQvhQmLREWkAE 64 (483)
++||++||||.|+--
T Consensus 40 ~~Eq~~qmL~~W~~~ 54 (86)
T 3oq9_A 40 TAEQKVQLLLCWYQS 54 (86)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 349999999999864
No 6
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=62.19 E-value=6.2 Score=32.60 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=26.1
Q ss_pred chhHHhhhhhhhhhhccccCCCCCCccccCCCCCCCchhhHHHHHhhh
Q 011572 228 SELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARA 275 (483)
Q Consensus 228 ~e~~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~ak~ 275 (483)
+.|||.-|..| +|. +| +--.-+.+||..|.||.-+.
T Consensus 13 L~W~q~~~~~y----------~~v-~v-~nFs~sw~dG~af~aLih~~ 48 (116)
T 1wyl_A 13 LRWCQEQTAGY----------PGV-HV-SDLSSSWADGLALCALVYRL 48 (116)
T ss_dssp HHHHHHHHHHS----------TTC-CC-SCTTTTTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccC----------CCC-CC-CCccccccccHHHHHHHHHH
Confidence 57999888654 343 23 33345899999999999886
No 7
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=61.27 E-value=7.3 Score=31.84 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=36.0
Q ss_pred chhHHhhhhhhhhhhccccCCCCCCccccCCCCCCCchhhHHHHHhhhcCcccCcccccCCcccCCCCChhhhhhhhhcc
Q 011572 228 SELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKRVGIPHCEGAATTKSPWNATELFDLALLE 307 (483)
Q Consensus 228 ~e~~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~ak~qgk~vgip~Cegaat~kspwna~elfdl~~le 307 (483)
+.|||.-|..| ||. +| .--.-+.+||..|.||.-+. .|+++|..-|.
T Consensus 9 L~W~q~~~~~y----------~~v-~v-~nFs~sw~dG~af~aLih~~---------------------~P~lid~~~l~ 55 (109)
T 1bkr_A 9 LLWCQMKTAGY----------PNV-NI-HNFTTSWRDGMAFNALIHKH---------------------RPDLIDFDKLK 55 (109)
T ss_dssp HHHHHHHTTTC----------TTC-CC-SSSSGGGTTSHHHHHHHHHH---------------------CGGGCCGGGCC
T ss_pred HHHHHHHHccC----------CCC-CC-CCCcccccccHHHHHHHHHH---------------------CcCCCCHHHcC
Confidence 56898766543 443 23 44446789999999999886 57888877776
Q ss_pred chhhh
Q 011572 308 GETIR 312 (483)
Q Consensus 308 getir 312 (483)
.+..+
T Consensus 56 ~~~~~ 60 (109)
T 1bkr_A 56 KSNAH 60 (109)
T ss_dssp TTCHH
T ss_pred cCCHH
Confidence 55443
No 8
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=53.30 E-value=11 Score=31.81 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=34.9
Q ss_pred chhHHhhhhhhhhhhccccCCCCCCccccCCCCCCCchhhHHHHHhhhcCcccCcccccCCcccCCCCChhhhhhhhhcc
Q 011572 228 SELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKRVGIPHCEGAATTKSPWNATELFDLALLE 307 (483)
Q Consensus 228 ~e~~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~ak~qgk~vgip~Cegaat~kspwna~elfdl~~le 307 (483)
+.|||.-|..| ||. +| .--.-+.+||..|.||.-+. .|+++|+.-|.
T Consensus 13 L~W~q~~~~~y----------~~v-~V-~nFs~sw~DG~Af~aLih~~---------------------~P~lid~~~l~ 59 (127)
T 1wyq_A 13 LLWCQMKTAGY----------PNV-NV-HNFTTSWRDGLAFNAIVHKH---------------------RPDLLDFESLK 59 (127)
T ss_dssp HHHHHHHHHTS----------SSC-CC-SCSSTTSSSSHHHHHHHHHH---------------------CTTTCCTTTSC
T ss_pred HHHHHHHHhcC----------CCC-CC-CCCcccccccHHHHHHHHHH---------------------CcCcCCHHHhC
Confidence 57999777644 343 23 33446899999999999886 47787777665
Q ss_pred chh
Q 011572 308 GET 310 (483)
Q Consensus 308 get 310 (483)
.+.
T Consensus 60 ~~~ 62 (127)
T 1wyq_A 60 KCN 62 (127)
T ss_dssp SSC
T ss_pred cCC
Confidence 443
No 9
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=53.19 E-value=9.4 Score=31.67 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=36.8
Q ss_pred chhHHhhhhhhhhhhccccCCCCCCccccCCCCCCCchhhHHHHHhhhcCcccCcccccCCcccCCCCChhhhhhhhhcc
Q 011572 228 SELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKRVGIPHCEGAATTKSPWNATELFDLALLE 307 (483)
Q Consensus 228 ~e~~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~ak~qgk~vgip~Cegaat~kspwna~elfdl~~le 307 (483)
+.|||.-|..| +|. + ++--.-+.+||..|.||.-+. +|+++|..-+.
T Consensus 14 L~W~q~~~~~y----------~~v-~-v~nFs~sw~DG~af~aLih~~---------------------~P~lid~~~l~ 60 (118)
T 1bhd_A 14 LSWVRQTTRPY----------SQV-N-VLNFTTSWTDGLAFNAVLHRH---------------------KPDLFSWDKVV 60 (118)
T ss_dssp HHHHHHHHTTS----------TTC-C-CCSSSGGGTTSHHHHHHHHHH---------------------CGGGSCHHHHH
T ss_pred HHHHHHHhccC----------CCC-C-CCCCcccccCcHHHHHHHHHH---------------------CcCcCCHHHhC
Confidence 57999877655 342 2 344446789999999999886 57888877776
Q ss_pred chhhh
Q 011572 308 GETIR 312 (483)
Q Consensus 308 getir 312 (483)
.++.+
T Consensus 61 ~~~~~ 65 (118)
T 1bhd_A 61 KMSPI 65 (118)
T ss_dssp HSCHH
T ss_pred cCCHH
Confidence 55443
No 10
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=52.12 E-value=7.2 Score=30.64 Aligned_cols=16 Identities=31% Similarity=0.642 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhc
Q 011572 50 LEEQVNQILREWNSEL 65 (483)
Q Consensus 50 LEeQvhQmLREWkAEL 65 (483)
+.||++|||+.|+..-
T Consensus 53 ~~eq~~~mL~~W~~~~ 68 (99)
T 1fad_A 53 LSERVRESLKVWKNAE 68 (99)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 6699999999998653
No 11
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=50.58 E-value=11 Score=31.79 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=34.4
Q ss_pred chhHHhhhhhhhhhhccccCCCCCCccccCCCCCCCchhhHHHHHhhhcCcccCcccccCCcccCCCCChhhhhhhhhcc
Q 011572 228 SELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKRVGIPHCEGAATTKSPWNATELFDLALLE 307 (483)
Q Consensus 228 ~e~~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~ak~qgk~vgip~Cegaat~kspwna~elfdl~~le 307 (483)
+.|||.-|..| +|. +| +--.-+.+||..|.||.-+. +|+++|..-|.
T Consensus 13 L~W~q~~~~~y----------~~v-~V-~nFs~sw~DG~af~aLih~~---------------------~P~lid~~~l~ 59 (128)
T 2d87_A 13 LDWCRAKTRGY----------EHV-DI-QNFSSSWSDGMAFCALVHNF---------------------FPEAFDYGQLS 59 (128)
T ss_dssp HHHHHHHSSSC----------TTC-CC-SCTTTTTTSSHHHHHHHHHH---------------------CTTTSCSTTSC
T ss_pred HHHHHHHhccC----------CCC-CC-CCccccccccHHHHHHHHHH---------------------CcCcCCHHHcC
Confidence 56999877655 222 23 33334889999999999886 46677776665
Q ss_pred chhh
Q 011572 308 GETI 311 (483)
Q Consensus 308 geti 311 (483)
.+..
T Consensus 60 ~~~~ 63 (128)
T 2d87_A 60 PQNR 63 (128)
T ss_dssp SSCH
T ss_pred ccCH
Confidence 4433
No 12
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=49.40 E-value=8.5 Score=31.27 Aligned_cols=15 Identities=20% Similarity=0.645 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhh
Q 011572 50 LEEQVNQILREWNSE 64 (483)
Q Consensus 50 LEeQvhQmLREWkAE 64 (483)
+.||++|||+.|+..
T Consensus 56 ~~eq~~~mL~~W~~r 70 (110)
T 1wxp_A 56 MKMRAKQLLVAWQDQ 70 (110)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 358999999999865
No 13
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=49.36 E-value=6.1 Score=32.94 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=35.7
Q ss_pred chhHHhhhhhhhhhhccccCCCCCCccccCCCCCCCchhhHHHHHhhhcCcccCcccccCCcccCCCCChhhhhhhhhcc
Q 011572 228 SELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKRVGIPHCEGAATTKSPWNATELFDLALLE 307 (483)
Q Consensus 228 ~e~~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~ak~qgk~vgip~Cegaat~kspwna~elfdl~~le 307 (483)
+.|||.-|..| +|.. ++--.-+.+||..|.||..+. +|+++|..-|.
T Consensus 15 L~W~q~~~~~y----------~~v~--v~nFs~sw~DG~af~aLih~~---------------------~P~lid~~~l~ 61 (121)
T 2d88_A 15 LGWCQRQTDGY----------AGVN--VTDLTMSWKSGLALCAIIHRY---------------------RPDLIDFDSLD 61 (121)
T ss_dssp HHHHHHHSTTS----------SSCC--CCCSSHHHHTSHHHHHHHHHH---------------------CTTTSCTTTSC
T ss_pred HHHHHHHhccC----------CCCC--CCCchhhccccHHHHHHHHHh---------------------CcCcCCHHHcC
Confidence 67999888654 2332 233334789999999999886 47777777776
Q ss_pred chhhh
Q 011572 308 GETIR 312 (483)
Q Consensus 308 getir 312 (483)
.++.+
T Consensus 62 ~~~~~ 66 (121)
T 2d88_A 62 EQNVE 66 (121)
T ss_dssp TTCHH
T ss_pred ccCHH
Confidence 65543
No 14
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=49.19 E-value=8.1 Score=32.25 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhh
Q 011572 50 LEEQVNQILREWNSE 64 (483)
Q Consensus 50 LEeQvhQmLREWkAE 64 (483)
+.||+.|||+.|+..
T Consensus 63 l~eq~~qmL~~W~~r 77 (114)
T 2of5_A 63 VQSQVVEAFIRWRQR 77 (114)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 569999999999875
No 15
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=48.64 E-value=8.4 Score=32.21 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhh
Q 011572 50 LEEQVNQILREWNSE 64 (483)
Q Consensus 50 LEeQvhQmLREWkAE 64 (483)
+.||+.|||+.|+..
T Consensus 63 l~eq~~qmL~~W~~r 77 (115)
T 2o71_A 63 VQSQVVEAFIRWRQR 77 (115)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 569999999999875
No 16
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=46.23 E-value=10 Score=31.34 Aligned_cols=15 Identities=33% Similarity=0.791 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhh
Q 011572 50 LEEQVNQILREWNSE 64 (483)
Q Consensus 50 LEeQvhQmLREWkAE 64 (483)
+.||++|||+.|+..
T Consensus 52 l~eq~~~mL~~W~~~ 66 (118)
T 2of5_H 52 LDEQIRHMLFSWAER 66 (118)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 458999999999886
No 17
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.47 E-value=8.5 Score=31.89 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=35.1
Q ss_pred chhHHhhhhhhhhhhccccCCCCCCccccCCCCCCCchhhHHHHHhhhcCcccCcccccCCcccCCCCChhhhhhhhhcc
Q 011572 228 SELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKRVGIPHCEGAATTKSPWNATELFDLALLE 307 (483)
Q Consensus 228 ~e~~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~ak~qgk~vgip~Cegaat~kspwna~elfdl~~le 307 (483)
+.|||.-|..| +|. .|--.. -+.+||..|.||.-+. .|+++|..-+.
T Consensus 15 L~W~~~~~~~y----------~~v-~v~nFs-~sw~dG~af~aLi~~~---------------------~P~lid~~~l~ 61 (119)
T 2d89_A 15 LVWCKEVTKNY----------RGV-KITNFT-TSWRNGLSFCAILHHF---------------------RPDLIDYKSLN 61 (119)
T ss_dssp HHHHHHHTTTC----------SSC-CCCCSS-HHHHTTHHHHHHHHHH---------------------CTTTSCGGGCC
T ss_pred HHHHHHHhccC----------CCC-CCCCcc-ccccccHHHHHHHHHH---------------------CcCcCChhhhc
Confidence 57999877544 232 233333 3788999999999886 57778877776
Q ss_pred chhhh
Q 011572 308 GETIR 312 (483)
Q Consensus 308 getir 312 (483)
.+..+
T Consensus 62 ~~~~~ 66 (119)
T 2d89_A 62 PQDIK 66 (119)
T ss_dssp TTCSH
T ss_pred ccCHH
Confidence 65444
No 18
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=44.37 E-value=11 Score=30.49 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhh
Q 011572 50 LEEQVNQILREWNSE 64 (483)
Q Consensus 50 LEeQvhQmLREWkAE 64 (483)
+.||++|||+.|+..
T Consensus 57 ~~eq~~~mL~~W~~~ 71 (111)
T 2yqf_A 57 LLEQSVALLNLWVIR 71 (111)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 468999999999876
No 19
>2ets_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.25A {Staphylococcus aureus subsp} SCOP: a.24.26.1
Probab=43.04 E-value=51 Score=28.82 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=45.5
Q ss_pred hhHHHHHHhhhhhhhHHHHhhhhHHHHhhcccch----HHHHHHHHHHHHHHHHhh
Q 011572 13 SHQFLLDSAKNRLNDLQEKFANLRVARKEGRAND----VAVLEEQVNQILREWNSE 64 (483)
Q Consensus 13 sH~~f~d~ak~rvdDLQ~mF~~LQ~ARKEsRs~D----~avLEeQvhQmLREWkAE 64 (483)
.|+-+-|-.+.-++++++|-..-|.+|++++.-| |-=.=++|.+.|.||+..
T Consensus 9 ~~~~~~~~i~~L~~~~~~~~~ry~~~ke~~~e~DFy~eVKPf~d~vd~~l~eW~~~ 64 (128)
T 2ets_A 9 HHHHMNDLVESLIYEVNNMQQNFENVKSQQQDHDFYQTVKPYTEHIDSILNEIKLH 64 (128)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTTHHHHHHHHHHHHHHHHHT
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHH
Confidence 3677889999999999999999999998888765 667789999999999974
No 20
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=42.43 E-value=26 Score=25.15 Aligned_cols=50 Identities=24% Similarity=0.442 Sum_probs=31.7
Q ss_pred CCcchhHHhhhhhhhhhhccccCCC-CCCccccCCCCCCCchhhHHHHHhhhcCcccC
Q 011572 225 ALGSELFEDYCSNFHATLAVSEDSP-GLTPVLRPGGINLKDSLLFNAVNARAQGKRVG 281 (483)
Q Consensus 225 aqG~e~~qdYCSsfHa~LAlnEGpp-G~~PVlRPgGI~LKDg~LFaAL~ak~qgk~vg 281 (483)
++|-+.++. |.++|..=. +|.+ +..|-|+ +....-+...|.+-..|..-+
T Consensus 1 a~G~~ly~~-Ca~CHg~~g--~g~~~~~~P~L~----g~~~~~~~~~l~~~~~g~~~~ 51 (79)
T 1c53_A 1 ADGAALYKS-CVGCHGADG--SKQAMGVGHAVK----GQKADELFKKLKGYADGSYGG 51 (79)
T ss_pred CcHHHHHHH-HHhccCCCC--CCCCCCCCCcCC----CCCHHHHHHHHHHHHcCCCCC
Confidence 457777888 999997432 3433 4566664 234556777777666665544
No 21
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=40.54 E-value=13 Score=31.37 Aligned_cols=16 Identities=38% Similarity=0.659 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhhc
Q 011572 50 LEEQVNQILREWNSEL 65 (483)
Q Consensus 50 LEeQvhQmLREWkAEL 65 (483)
+.||++|||+.|+..-
T Consensus 45 l~eq~~~mL~~W~~r~ 60 (122)
T 3ezq_B 45 LTERVRESLRIWKNTE 60 (122)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6789999999999653
No 22
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=36.58 E-value=31 Score=26.04 Aligned_cols=29 Identities=28% Similarity=0.556 Sum_probs=24.1
Q ss_pred hhHHHHhhcccchHHHHHHHHHHHHHHHH
Q 011572 34 NLRVARKEGRANDVAVLEEQVNQILREWN 62 (483)
Q Consensus 34 ~LQ~ARKEsRs~D~avLEeQvhQmLREWk 62 (483)
-|..||+.+|-.+|+.|++-++++=+|..
T Consensus 16 ~I~qAk~~rRfdEV~~L~~NL~EL~~E~~ 44 (48)
T 3v1a_A 16 FIHQAKAAGRMDEVRTLQENLHQLMHEYF 44 (48)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999988777666644
No 23
>2hfi_A Hypothetical protein YPPE; YPPE_bacsu, GFT structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus subtilis} SCOP: a.24.26.1 PDB: 2im8_A
Probab=32.51 E-value=55 Score=28.50 Aligned_cols=50 Identities=12% Similarity=0.258 Sum_probs=43.2
Q ss_pred HHHHHHhhhhhhhHHHHhhhhHHHHhhcccch----HHHHHHHHHHHHHHHHhh
Q 011572 15 QFLLDSAKNRLNDLQEKFANLRVARKEGRAND----VAVLEEQVNQILREWNSE 64 (483)
Q Consensus 15 ~~f~d~ak~rvdDLQ~mF~~LQ~ARKEsRs~D----~avLEeQvhQmLREWkAE 64 (483)
+.+++.-..-++++.+|-...|.+|++++.-| |-=.=++|.+.|.+|+..
T Consensus 4 ~~L~~lteqLi~~~~e~~~~y~~~ke~~~e~DF~~eVKPf~d~vd~~l~~w~~~ 57 (131)
T 2hfi_A 4 QTLLEMTEQMIEVAEKGADRYQEGKNSNHSYDFFETIKPAVEENDELAARWAEG 57 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHH
Confidence 45788888889999999999999999999865 667789999999999854
No 24
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=32.14 E-value=36 Score=23.95 Aligned_cols=43 Identities=12% Similarity=0.296 Sum_probs=24.0
Q ss_pred CCcchhHHhhhhhhhhhhccccCCCCCCccccCCCCCCCchhhHHHH
Q 011572 225 ALGSELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAV 271 (483)
Q Consensus 225 aqG~e~~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL 271 (483)
+.|-.-++.+|.++|..=. +|. ..|-|+--+....+.-|+..+
T Consensus 1 ~~G~~l~~~~C~~CHg~~g--~g~--~gP~L~~~~~~~~~~~l~~~i 43 (71)
T 1c75_A 1 VDAEAVVQQKCISCHGGDL--TGA--SAPAIDKAGANYSEEEILDII 43 (71)
T ss_dssp CCHHHHHHHHTHHHHCTTS--SCS--SSCCCTTGGGTSCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCC--CCC--CCCCCccccccCCHHHHHHHH
Confidence 3566778899999997622 232 236565322233344455444
No 25
>2huj_A LIN2004 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.74A {Listeria innocua} SCOP: a.24.26.1
Probab=31.29 E-value=1e+02 Score=27.15 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=42.4
Q ss_pred HHHHHhhhhhhhHHHHhhhhHHHHhhcccch----HHHHHHHHHHHHHHHHhh
Q 011572 16 FLLDSAKNRLNDLQEKFANLRVARKEGRAND----VAVLEEQVNQILREWNSE 64 (483)
Q Consensus 16 ~f~d~ak~rvdDLQ~mF~~LQ~ARKEsRs~D----~avLEeQvhQmLREWkAE 64 (483)
.+++.-..-++++.+|-...+.+|.|++.-| |-=.=++|.+.|.||+..
T Consensus 21 ~L~~lteqLi~~~~e~~~ry~~~ke~~~e~DFy~eVKPf~d~vd~~l~eW~~~ 73 (140)
T 2huj_A 21 ELLIRTEQLLLQNEKNWELYLSNREEEKPFDFYKDMKPFVDEAKRCADDFLEL 73 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHH
Confidence 4777888889999999999999999999865 666789999999999854
No 26
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=28.45 E-value=45 Score=25.43 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=22.1
Q ss_pred hhhHHHHhhcccchHHHHHHHHHHHHHH
Q 011572 33 ANLRVARKEGRANDVAVLEEQVNQILRE 60 (483)
Q Consensus 33 ~~LQ~ARKEsRs~D~avLEeQvhQmLRE 60 (483)
+-+..||+.+|-.+|+.||+-++++=+|
T Consensus 16 ~~I~qAk~~~r~DEV~~Le~NLrEL~~e 43 (51)
T 1yzm_A 16 SFIRQAKAAGRMDEVRTLQENLRQLQDE 43 (51)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 3478899999999999999866554433
No 27
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=27.56 E-value=22 Score=26.85 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=12.3
Q ss_pred hcccchHHHHHHHHHHHHHHHHh
Q 011572 41 EGRANDVAVLEEQVNQILREWNS 63 (483)
Q Consensus 41 EsRs~D~avLEeQvhQmLREWkA 63 (483)
|.-+++.+|+|.+ ..||.||+|
T Consensus 5 e~dsA~~evIe~R-RrlLeEW~a 26 (50)
T 3zwl_E 5 EADTAMRDLILHQ-RELLKQWTE 26 (50)
T ss_dssp ------CCHHHHH-HHHHHHHHH
T ss_pred HHhHhhHHHHHHH-HHHHHHHHH
Confidence 3446677777776 578999876
No 28
>4djb_A E4-ORF3; adenovirus protein, RRM-like fold, HPV E2 DBD-like protein, suppressor inactivation, nucleus, viral protein; 2.05A {Human adenovirus 5}
Probab=25.27 E-value=35 Score=30.29 Aligned_cols=16 Identities=31% Similarity=0.750 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhc
Q 011572 50 LEEQVNQILREWNSEL 65 (483)
Q Consensus 50 LEeQvhQmLREWkAEL 65 (483)
|.+++-|++|+||.|=
T Consensus 38 L~~~~~~Ii~~Wk~EN 53 (130)
T 4djb_A 38 IRDLLRDILRRWRDEN 53 (130)
T ss_dssp HHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhhcc
Confidence 5678999999999983
No 29
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=24.87 E-value=54 Score=26.32 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=22.4
Q ss_pred hhhHHHHhhcccchHHHHHHHHHHHHHH
Q 011572 33 ANLRVARKEGRANDVAVLEEQVNQILRE 60 (483)
Q Consensus 33 ~~LQ~ARKEsRs~D~avLEeQvhQmLRE 60 (483)
.-|..||+.+|-.+|+.||+-++++=+|
T Consensus 34 ~yI~qAk~~~r~DEV~tLe~NLrEL~~e 61 (69)
T 1z0k_B 34 SFIRQAKAAGRMDEVRTLQENLRQLQDE 61 (69)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3478899999999999999876655444
No 30
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=24.85 E-value=54 Score=25.74 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=21.5
Q ss_pred hhhHHHHhhcccchHHHHHHHHHHHHH
Q 011572 33 ANLRVARKEGRANDVAVLEEQVNQILR 59 (483)
Q Consensus 33 ~~LQ~ARKEsRs~D~avLEeQvhQmLR 59 (483)
.-+..||+.+|-.+|++||+-++++=+
T Consensus 23 ~yI~qAk~~~R~DEV~~Le~NLrEL~~ 49 (59)
T 1z0j_B 23 AYIFDAKQCGRLDEVEVLTENLRELKH 49 (59)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 347899999999999999986554433
No 31
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.69 E-value=62 Score=26.55 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=35.3
Q ss_pred hhhhHHHHhhhhHHHHhhc--ccchHHHHHHHHHHHHHHHHhhcCCCCC
Q 011572 24 RLNDLQEKFANLRVARKEG--RANDVAVLEEQVNQILREWNSELSAPSP 70 (483)
Q Consensus 24 rvdDLQ~mF~~LQ~ARKEs--Rs~D~avLEeQvhQmLREWkAEL~~pSP 70 (483)
=++|++-||.|-..=-.++ -..++..|++...++|++++.++..+..
T Consensus 68 f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~l~~~~~~~~~~~~ 116 (121)
T 2d9e_A 68 FEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGS 116 (121)
T ss_dssp HHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTSB
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3578999998866544432 2357889999999999999998875543
No 32
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=23.58 E-value=22 Score=27.33 Aligned_cols=12 Identities=50% Similarity=1.049 Sum_probs=8.9
Q ss_pred hhhhhhhhhhhhh
Q 011572 312 REWLFFDKHRKAF 324 (483)
Q Consensus 312 rewlffdkprraf 324 (483)
|=||.|| |||++
T Consensus 3 kIWl~fD-Prr~L 14 (52)
T 1xrd_A 3 RIWQLFD-PRQAL 14 (52)
T ss_dssp GGGGTSS-HHHHH
T ss_pred eEEEEEc-hhHHH
Confidence 5699998 77764
No 33
>2gf5_A FADD protein; death domain, death effector domain, apoptosis, death- inducing signaling complex; NMR {Homo sapiens} SCOP: a.77.1.2 a.77.1.4
Probab=23.50 E-value=29 Score=30.49 Aligned_cols=15 Identities=40% Similarity=0.765 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhh
Q 011572 50 LEEQVNQILREWNSE 64 (483)
Q Consensus 50 LEeQvhQmLREWkAE 64 (483)
+.||++|||+.|+..
T Consensus 137 ~~eq~~~mL~~W~~r 151 (191)
T 2gf5_A 137 LTERVRESLRIWKNT 151 (191)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 568999999999864
No 34
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=22.88 E-value=66 Score=29.31 Aligned_cols=36 Identities=17% Similarity=0.036 Sum_probs=24.5
Q ss_pred chhHHhhhhhhhhhhccccCCCCCCccccCCCCCCCchhhHHHHHhhh
Q 011572 228 SELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARA 275 (483)
Q Consensus 228 ~e~~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~ak~ 275 (483)
+.||+.-|. |-+|. +|--. .=+++||..|.||..+.
T Consensus 146 L~W~~~~~~----------~y~~v-~v~nF-s~s~~DG~a~~aLi~~~ 181 (254)
T 1wku_A 146 LLWCQRKTA----------PYRNV-NVQNF-HTSWKDGLALCALIHRH 181 (254)
T ss_dssp HHHHHHHHT----------TCTTC-CCCSS-SGGGTTSHHHHHHHHHH
T ss_pred HHHHHHHcc----------CCCCC-cCCCC-ccchhhHHHHHHHHHHH
Confidence 679987663 33443 33323 33799999999999886
No 35
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=20.92 E-value=59 Score=23.61 Aligned_cols=49 Identities=24% Similarity=0.341 Sum_probs=29.1
Q ss_pred CCCcchhHHhhhhhhhhhhccccCCCCCCccccCCCCCCCchhhHHHHHhhhcCcc
Q 011572 224 PALGSELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKR 279 (483)
Q Consensus 224 PaqG~e~~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~ak~qgk~ 279 (483)
++.|-..++ +|.++|..-. +|..+..|-|. | ....-+.+.|..-..|..
T Consensus 4 ~~~G~~ly~-~C~~CHg~~g--~g~~~~~P~L~--~--~~~~~~~~~l~~~~~g~~ 52 (87)
T 1cno_A 4 IEAGKAKAA-VCAACHGQNG--ISQVPIYPNLA--G--QKEQYLVAALKAYKAGQR 52 (87)
T ss_dssp HHHHHHHGG-GTHHHHCTTS--CCSSTTSCCCT--T--CCHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHH-HHHhhcCCCC--CCCCCCCCCCC--C--CCHHHHHHHHHHHHcCCc
Confidence 346777788 9999997532 34334556554 2 233445566666566654
No 36
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=20.06 E-value=53 Score=28.51 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=24.7
Q ss_pred HHhhhhHHHHhhccc----chHHHHHHHHHHHHHHHHhh
Q 011572 30 EKFANLRVARKEGRA----NDVAVLEEQVNQILREWNSE 64 (483)
Q Consensus 30 ~mF~~LQ~ARKEsRs----~D~avLEeQvhQmLREWkAE 64 (483)
.+..-++.|.++.-. .+..-+|+|+.||| +|--.
T Consensus 90 Av~eA~e~A~~r~~~~~~~~~~~~~~~~~k~m~-~wa~~ 127 (147)
T 1khc_A 90 AMYHTLEKARVRAGKTFSSSPGESLEDQLKPML-EWAHG 127 (147)
T ss_dssp HHHHHHHHHHHHHTCCCCCCTTCCHHHHHHHHH-HHHHT
T ss_pred HHHHHHHHHHHHhCCCCCCCccccHHHHHHHHH-HHhhc
Confidence 444567888777543 46667899999999 99754
Done!