BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011573
(482 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 32/184 (17%)
Query: 208 EKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL-- 265
E KE + +++ F K + YA +G +G LL GPPGTGK+ + A+A + +
Sbjct: 18 EAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGG 77
Query: 266 ----ELTAVKDNTELRKLLIETSSK---SIIVIEDIDCSLDLTGQRRXXXXXXXXXXXXX 318
E+ + +R L ET+ K SII I++ID G+ R
Sbjct: 78 SSFIEMFVGLGASRVRDLF-ETAKKQAPSIIFIDEIDA----IGKSRAAGGVVS------ 126
Query: 319 XPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRM 378
G +ERE TL+ LL +DG S +++ TN E LDPAL+R GR
Sbjct: 127 ------GNDEREQ-----TLNQLLAEMDGFGSEN-APVIVLAATNRPEILDPALMRPGRF 174
Query: 379 DKHI 382
D+ +
Sbjct: 175 DRQV 178
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 32/172 (18%)
Query: 221 KSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDN--TELRK 278
K+ + + R+G +G LLYGPPGTGK+ + A+A +G + + + D E +
Sbjct: 202 KNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESAR 261
Query: 279 LLIET------SSKSIIVIEDIDCSLDLTGQRRXXXXXXXXXXXXXXPRQKLGKEERETN 332
++ E II ++++D G RR +RE
Sbjct: 262 IIREMFAYAKEHEPCIIFMDEVDA----IGGRRFSEGTSA---------------DREI- 301
Query: 333 NSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIEL 384
Q TL LL +DG + G+ I+ TN + LDPAL+R GR+D+ +E+
Sbjct: 302 --QRTLMELLTQMDGFDNL--GQTKIIMATNRPDTLDPALLRPGRLDRKVEI 349
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 109/261 (41%), Gaps = 53/261 (20%)
Query: 208 EKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMA--------NLLG 259
E E + +++ F K + RIG +G LL GPPGTGK+ + A+A ++ G
Sbjct: 23 EAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISG 82
Query: 260 YDLYDLELTAVKDNTELRKLLIETSSKS--IIVIEDIDCSLDLTGQRRXXXXXXXXXXXX 317
D +EL +R L + + + I+ I++ID G+ R
Sbjct: 83 SDF--VELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA----VGRHRGAGLGG------ 130
Query: 318 XXPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGR 377
G +ERE TL+ LL +DG S G +++ TN + LDPAL+R GR
Sbjct: 131 -------GHDEREQ-----TLNQLLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGR 176
Query: 378 MDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLGEAKMTPADVAEHLMPKTFPAD 437
DK I + + K L I + N K DV ++ K P
Sbjct: 177 FDKKIVVDPPDM----LGRKKILEIHTRN------------KPLAEDVNLEIIAKRTPGF 220
Query: 438 VEFSLRSL-NQALELAKEEAR 457
V L +L N+A LA E R
Sbjct: 221 VGADLENLVNEAALLAAREGR 241
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 78/170 (45%), Gaps = 38/170 (22%)
Query: 224 DFYARIGRAWKRGYLLYGPPGTGKSTMIAAMAN--------LLGYDLYDLELTAVKDNTE 275
+ Y +G +G +LYG PGTGK+ + A+AN ++G +L L D
Sbjct: 206 ELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLG---DGPR 262
Query: 276 LRKLLIETS---SKSIIVIEDIDCSLDLTGQRRXXXXXXXXXXXXXXPRQKLGKEERETN 332
L + + + + + SI+ I++ID G +R ERE
Sbjct: 263 LCRQIFKVAGENAPSIVFIDEIDA----IGTKRYDSNSGG---------------EREI- 302
Query: 333 NSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHI 382
Q T+ LLN +DG G+ ++ TN IE LDPALIR GR+D+ I
Sbjct: 303 --QRTMLELLNQLDGFDDR--GDVKVIMATNKIETLDPALIRPGRIDRKI 348
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 108/261 (41%), Gaps = 53/261 (20%)
Query: 208 EKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMA--------NLLG 259
E E + +++ F K + RIG +G LL GPPGTG + + A+A ++ G
Sbjct: 23 EAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHISG 82
Query: 260 YDLYDLELTAVKDNTELRKLLIETSSKS--IIVIEDIDCSLDLTGQRRXXXXXXXXXXXX 317
D +EL +R L + + + I+ I++ID G+ R
Sbjct: 83 SDF--VELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA----VGRHRGAGLGG------ 130
Query: 318 XXPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGR 377
G +ERE TL+ LL +DG S G +++ TN + LDPAL+R GR
Sbjct: 131 -------GHDEREQ-----TLNQLLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGR 176
Query: 378 MDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLGEAKMTPADVAEHLMPKTFPAD 437
DK I + + K L I + N K DV ++ K P
Sbjct: 177 FDKKIVVDPPDM----LGRKKILEIHTRN------------KPLAEDVNLEIIAKRTPGF 220
Query: 438 VEFSLRSL-NQALELAKEEAR 457
V L +L N+A LA E R
Sbjct: 221 VGADLENLVNEAALLAAREGR 241
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 34/191 (17%)
Query: 210 KEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTM---IAAMANLLGYDLYDLE 266
+E+++ ++ K D + +G +G L+YGPPGTGK+ + AA N L +
Sbjct: 191 EELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250
Query: 267 LTA--VKDNTELRK---LLIETSSKSIIVIEDIDCSLDLTGQRRXXXXXXXXXXXXXXPR 321
L + + +L + L + + +II I+++D G +R
Sbjct: 251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDA----IGTKRFDS------------- 293
Query: 322 QKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVF-TTNYIEKLDPALIRKGRMDK 380
+K G E Q T+ LLN +DG S +R+ V TN ++ LDPAL+R GR+D+
Sbjct: 294 EKSGDRE-----VQRTMLELLNQLDGFSS---DDRVKVLAATNRVDVLDPALLRSGRLDR 345
Query: 381 HIELSHCSYEA 391
IE S ++
Sbjct: 346 KIEFPLPSEDS 356
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 42/188 (22%)
Query: 208 EKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMAN--------LLG 259
E KE + +L+ + + + ++G +G L+ GPPGTGK+ + A+A + G
Sbjct: 19 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG 78
Query: 260 YDLYDLEL----TAVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRXXXXXXXXXX 315
D ++ + + V+D E K ++ II I++ID G++R
Sbjct: 79 SDFVEMFVGVGASRVRDMFEQAK----KAAPCIIFIDEIDA----VGRQRGAGLGG---- 126
Query: 316 XXXXPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVF-TTNYIEKLDPALIR 374
G +ERE TL+ +L +DG G E +IV TN + LDPAL+R
Sbjct: 127 ---------GHDEREQ-----TLNQMLVEMDGFE---GNEGIIVIAATNRPDVLDPALLR 169
Query: 375 KGRMDKHI 382
GR D+ +
Sbjct: 170 PGRFDRQV 177
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 40/172 (23%)
Query: 224 DFYARIGRAWKRGYLLYGPPGTGKSTMIAAMAN--------LLGYDLYDLEL----TAVK 271
D Y +IG RG LLYGPPGTGK+ ++ A+AN + G + L V+
Sbjct: 196 DLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVR 255
Query: 272 DNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRXXXXXXXXXXXXXXPRQKLGKEERET 331
D L + ++ SII I+++D ++ +
Sbjct: 256 DVFRLAR----ENAPSIIFIDEVDS----------------------IATKRFDAQTGSD 289
Query: 332 NNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIE 383
Q L LL +DG + + ++ TN + LDPAL+R GR+D+ IE
Sbjct: 290 REVQRILIELLTQMDGFDQSTNVK--VIMATNRADTLDPALLRPGRLDRKIE 339
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 45/197 (22%)
Query: 208 EKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLEL 267
E KE+I+ + K + + +G A +G +LYGPPGTGK+ + A+A+ D +
Sbjct: 159 EIKEVIELPV---KHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH-----HTDCKF 210
Query: 268 TAVKDNTELRKLLIETS-------------SKSIIVIEDIDCSLDLTGQRRXXXXXXXXX 314
V ++K + E S + SII +++ID G R
Sbjct: 211 IRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS----IGSTRV-------- 258
Query: 315 XXXXXPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIR 374
+ G + E Q T+ LLN +DG ++ + I+ TN ++ LDPAL+R
Sbjct: 259 -------EGSGGGDSEV---QRTMLELLNQLDGFETSKNIK--IIMATNRLDILDPALLR 306
Query: 375 KGRMDKHIELSHCSYEA 391
GR+D+ IE S A
Sbjct: 307 PGRIDRKIEFPPPSVAA 323
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 40/177 (22%)
Query: 221 KSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMAN--------LLGYDLYDLEL----T 268
K + + ++G +G LLYGPPGTGK+ + A+A ++G +L + +
Sbjct: 38 KHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGAS 97
Query: 269 AVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRXXXXXXXXXXXXXXPRQKLGKEE 328
VKD +L K + SII I++ID + +R L +
Sbjct: 98 LVKDIFKLAK----EKAPSIIFIDEIDA---IAAKR----------------TDALTGGD 134
Query: 329 RETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELS 385
RE Q TL LL +DG + G+ I+ TN + LDPA++R GR D+ IE+
Sbjct: 135 REV---QRTLMQLLAEMDGFDAR--GDVKIIGATNRPDILDPAILRPGRFDRIIEVP 186
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 75/181 (41%), Gaps = 38/181 (20%)
Query: 222 SEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMAN--------LLGYDLYDLELTAVKDN 273
S + +A +G +G LLYGPPGTGK+ A+AN ++G +L V +
Sbjct: 231 SPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ---KYVGEG 287
Query: 274 TELRKLLIE---TSSKSIIVIEDIDCSLDLTGQRRXXXXXXXXXXXXXXPRQKLGKEERE 330
+ + L E T II ++ID + G R
Sbjct: 288 ARMVRELFEMARTKKACIIFFDEIDA---VGGAR-------------------FDDGAGG 325
Query: 331 TNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYE 390
N Q T+ L+ +DG G ++F TN LDPAL+R GR+D+ +E S E
Sbjct: 326 DNEVQRTMLELITQLDGFDPR--GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLE 383
Query: 391 A 391
Sbjct: 384 G 384
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 35/182 (19%)
Query: 209 KKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYD---- 264
++E+ ++A ++ D + +G G LL GPPG GK+ + A+AN G +
Sbjct: 19 REELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGP 78
Query: 265 --LELTAVKDNTELRKLL--IETSSKSIIVIEDIDCSLDLTGQRRXXXXXXXXXXXXXXP 320
L + + +R++ + S+ +I +++D P
Sbjct: 79 ELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVD---------------------ALCP 117
Query: 321 RQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDK 380
R + +RET S ++ LL +DGL + + I+ TN + +DPA++R GR+DK
Sbjct: 118 R----RSDRETGASVRVVNQLLTEMDGLEAR--QQVFIMAATNRPDIIDPAILRPGRLDK 171
Query: 381 HI 382
+
Sbjct: 172 TL 173
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 35/169 (20%)
Query: 225 FYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLY------DLELTAVKDNTELRK 278
+ IG RG LLYGPPGTGK+ + A+AN G + + A + + LRK
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 288
Query: 279 LL--IETSSKSIIVIEDIDCSLDLTGQRRXXXXXXXXXXXXXXPRQKLGKEERETNNSQV 336
E ++ +II I++ LD +R + G+ ER
Sbjct: 289 AFEEAEKNAPAIIFIDE----LDAIAPKR---------------EKTHGEVERR------ 323
Query: 337 TLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELS 385
+S LL +DGL +++ TN +DPAL R GR D+ +++
Sbjct: 324 IVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 19/205 (9%)
Query: 180 LYTNNGSNWVHVVFEHP-ATFQTLAMEPAEKKEIIDDLIAFS-KSEDFYARIGRAWKRGY 237
L +N S V E P T++ + K+E+ +L+ + + D + + G +G
Sbjct: 456 LSQSNPSALRETVVEVPQVTWEDIGGLEDVKREL-QELVQYPVEHPDKFLKFGMTPSKGV 514
Query: 238 LLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIEDIDCS 297
L YGPPG GK+ + A+AN + ++ EL + S ++ I D
Sbjct: 515 LFYGPPGCGKTLLAKAIANECQANFISIK------GPELLTMWFGESEANVREIFD---- 564
Query: 298 LDLTGQRRXXXXXXXXXXXXXXPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERL 357
R+ + + G + ++ +L +DG+ +
Sbjct: 565 ----KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVF 618
Query: 358 IVFTTNYIEKLDPALIRKGRMDKHI 382
I+ TN + +DPA++R GR+D+ I
Sbjct: 619 IIGATNRPDIIDPAILRPGRLDQLI 643
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 35/169 (20%)
Query: 225 FYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLY------DLELTAVKDNTELRK 278
+ IG RG LLYGPPGTGK+ + A+AN G + + A + + LRK
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 288
Query: 279 LL--IETSSKSIIVIEDIDCSLDLTGQRRXXXXXXXXXXXXXXPRQKLGKEERETNNSQV 336
E ++ +II I++ LD +R + G+ ER
Sbjct: 289 AFEEAEKNAPAIIFIDE----LDAIAPKR---------------EKTHGEVERR------ 323
Query: 337 TLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELS 385
+S LL +DGL +++ TN +DPAL R GR D+ +++
Sbjct: 324 IVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 19/205 (9%)
Query: 180 LYTNNGSNWVHVVFEHP-ATFQTLAMEPAEKKEIIDDLIAFS-KSEDFYARIGRAWKRGY 237
L +N S V E P T++ + K+E+ +L+ + + D + + G +G
Sbjct: 456 LSQSNPSALRETVVEVPQVTWEDIGGLEDVKREL-QELVQYPVEHPDKFLKFGMTPSKGV 514
Query: 238 LLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIEDIDCS 297
L YGPPG GK+ + A+AN + ++ EL + S ++ I D
Sbjct: 515 LFYGPPGCGKTLLAKAIANECQANFISIK------GPELLTMWFGESEANVREIFD---- 564
Query: 298 LDLTGQRRXXXXXXXXXXXXXXPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERL 357
R+ + + G + ++ +L +DG+ +
Sbjct: 565 ----KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVF 618
Query: 358 IVFTTNYIEKLDPALIRKGRMDKHI 382
I+ TN + +DPA++R GR+D+ I
Sbjct: 619 IIGATNRPDIIDPAILRPGRLDQLI 643
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 35/169 (20%)
Query: 225 FYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLY------DLELTAVKDNTELRK 278
+ IG RG LLYGPPGTGK+ + A+AN G + + A + + LRK
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 288
Query: 279 LL--IETSSKSIIVIEDIDCSLDLTGQRRXXXXXXXXXXXXXXPRQKLGKEERETNNSQV 336
E ++ +II I++ LD +R + G+ ER
Sbjct: 289 AFEEAEKNAPAIIFIDE----LDAIAPKR---------------EKTHGEVERR------ 323
Query: 337 TLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELS 385
+S LL +DGL +++ TN +DPAL R GR D+ +++
Sbjct: 324 IVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 41/172 (23%)
Query: 225 FYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLY------DLELTAVKDNTELRK 278
+ IG RG LLYGPPGTGK+ + A+AN G + + A + + LRK
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 288
Query: 279 LL--IETSSKSIIVIEDIDCSLDLTGQRRXXXXXXXXXXXXXXPRQKLGKEERETNNSQV 336
E ++ +II I+++D P+ RE + +V
Sbjct: 289 AFEEAEKNAPAIIFIDELDA---------------------IAPK-------REKTHGEV 320
Query: 337 ---TLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELS 385
+S LL +DGL +++ TN +DPAL R GR D+ +++
Sbjct: 321 ERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 35/169 (20%)
Query: 225 FYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLY------DLELTAVKDNTELRK 278
+ IG RG LLYGPPGTGK+ + A+AN G + + A + + LRK
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 288
Query: 279 LL--IETSSKSIIVIEDIDCSLDLTGQRRXXXXXXXXXXXXXXPRQKLGKEERETNNSQV 336
E ++ +II I++ LD +R + G+ ER
Sbjct: 289 AFEEAEKNAPAIIFIDE----LDAIAPKR---------------EKTHGEVERR------ 323
Query: 337 TLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELS 385
+S LL +DGL +++ TN +DPAL R GR D+ +++
Sbjct: 324 IVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 41/172 (23%)
Query: 225 FYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLY------DLELTAVKDNTELRK 278
+ IG RG LLYGPPGTGK+ + A+AN G + + A + + LRK
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 288
Query: 279 LL--IETSSKSIIVIEDIDCSLDLTGQRRXXXXXXXXXXXXXXPRQKLGKEERETNNSQV 336
E ++ +II I+++D P+ RE + +V
Sbjct: 289 AFEEAEKNAPAIIFIDELDA---------------------IAPK-------REKTHGEV 320
Query: 337 ---TLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELS 385
+S LL +DGL +++ TN +DPAL R GR D+ +++
Sbjct: 321 ERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 37/186 (19%)
Query: 208 EKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMAN--------LLG 259
E K + + + + KS + + ++G +G LL GPPG GK+ + A+A + G
Sbjct: 13 EAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAG 72
Query: 260 YDLYDLELTAVKDNTELRKLLIETSSKS--IIVIEDIDCSLDLTGQRRXXXXXXXXXXXX 317
+ +E+ +R L E +++ I+ I++ID G++R
Sbjct: 73 AEF--VEVIGGLGAARVRSLFKEARARAPCIVYIDEIDA----VGKKRSTTMSGFSNT-- 124
Query: 318 XXPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVF-TTNYIEKLDPALIRKG 376
EE +T N LL +DG+ + + +IV +TN + LD AL+R G
Sbjct: 125 ---------EEEQTLNQ------LLVEMDGMGTT---DHVIVLASTNRADILDGALMRPG 166
Query: 377 RMDKHI 382
R+D+H+
Sbjct: 167 RLDRHV 172
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 32/177 (18%)
Query: 216 LIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMAN--------LLGYDLYDLEL 267
++ F K+ + +G +G LL GPPG GK+ + A+A G D +E+
Sbjct: 55 IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF--VEM 112
Query: 268 TAVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRXXXXXXXXXXXXXXPRQKLGKE 327
+R L ET+ + I ID +D G++R G +
Sbjct: 113 FVGVGAARVRDLF-ETAKRHAPCIVFID-EIDAVGRKRGSGVGG-------------GND 157
Query: 328 ERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIEL 384
ERE TL+ LL +DG +++ TN + LDPAL+R GR D+ I +
Sbjct: 158 EREQ-----TLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALLRPGRFDRQIAI 207
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 32/177 (18%)
Query: 216 LIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMAN--------LLGYDLYDLEL 267
++ F K+ + +G +G LL GPPG GK+ + A+A G D +E+
Sbjct: 46 IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF--VEM 103
Query: 268 TAVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRXXXXXXXXXXXXXXPRQKLGKE 327
+R L ET+ + I ID +D G++R G +
Sbjct: 104 FVGVGAARVRDLF-ETAKRHAPCIVFID-EIDAVGRKRGSGVGG-------------GND 148
Query: 328 ERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIEL 384
ERE TL+ LL +DG +++ TN + LDPAL+R GR D+ I +
Sbjct: 149 EREQ-----TLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALLRPGRFDRQIAI 198
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 32/177 (18%)
Query: 216 LIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMAN--------LLGYDLYDLEL 267
++ F K+ + +G +G LL GPPG GK+ + A+A G D +E+
Sbjct: 55 IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF--VEM 112
Query: 268 TAVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRXXXXXXXXXXXXXXPRQKLGKE 327
+R L ET+ + I ID +D G++R G +
Sbjct: 113 FVGVGAARVRDLF-ETAKRHAPCIVFID-EIDAVGRKRGSGVGG-------------GND 157
Query: 328 ERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIEL 384
ERE TL+ LL +DG +++ TN + LDPAL+R GR D+ I +
Sbjct: 158 EREQ-----TLNQLLVEMDGFEKDT--AIVVMAATNRPDILDPALLRPGRFDRQIAI 207
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 32/177 (18%)
Query: 216 LIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMAN--------LLGYDLYDLEL 267
++ F K+ + +G +G LL GPPG GK+ + A+A G D +E+
Sbjct: 31 IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF--VEM 88
Query: 268 TAVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRXXXXXXXXXXXXXXPRQKLGKE 327
+R L ET+ + I ID +D G++R G +
Sbjct: 89 FVGVGAARVRDLF-ETAKRHAPCIVFID-EIDAVGRKRGSGVGG-------------GND 133
Query: 328 ERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIEL 384
ERE TL+ LL +DG +++ TN + LDPAL+R GR D+ I +
Sbjct: 134 EREQ-----TLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALLRPGRFDRQIAI 183
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 33/153 (21%)
Query: 231 RAWKRGYLLYGPPGTGKSTM---IAAMANLLGYDLYDLELTA--VKDNTELRKLLIETSS 285
RA RG LL+GPPG GK+ + +AA +N +++ LT+ V + +L + L +
Sbjct: 145 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR 204
Query: 286 K---SIIVIEDIDCSLDLTGQRRXXXXXXXXXXXXXXPRQKLGKEERETNNSQVTLSGLL 342
+ SII I+ +D L +RR E E + S+ + L
Sbjct: 205 ELQPSIIFIDQVDS---LLCERR----------------------EGEHDASRRLKTEFL 239
Query: 343 NFIDGLWSACGGERLIVFTTNYIEKLDPALIRK 375
DG+ SA L++ TN ++LD A++R+
Sbjct: 240 IEFDGVQSAGDDRVLVMGATNRPQELDEAVLRR 272
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTEL 276
R +LYGPPG GK+T +A LGYD+ + + V+ T L
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLL 119
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 16/159 (10%)
Query: 224 DFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIET 283
D + + G +G L YGPPG GK+ + A+AN + ++ EL +
Sbjct: 39 DKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK------GPELLTMWFGE 92
Query: 284 SSKSIIVIEDIDCSLDLTGQRRXXXXXXXXXXXXXXPRQKLGKEERETNNSQVTLSGLLN 343
S ++ I D R+ + + G + ++ +L
Sbjct: 93 SEANVREIFD--------KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILT 144
Query: 344 FIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHI 382
+DG+ + I+ TN + +DPA++R GR+D+ I
Sbjct: 145 EMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLI 181
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 239 LYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELR 277
L GPPG GK+++ ++A LG + L V+D +E+R
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151
>pdb|3RCB|A Chain A, Crystal Structure Of The K102e Mutant Of Kijd10, A
3-Ketoreductase From Actinomadura Kijaniata In Complex
With Tdp-Benzene And Nadp
Length = 350
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 149 HKRHRDLILGPYLVSVLKEGREIKVRNRMRKLYTNN-------GSNWVHVVFEHPATFQT 201
H+R RD+++G + ++G ++ M YTNN G W++ VF PAT+Q
Sbjct: 226 HERDRDVVVGGNALLTTRQGVTAQLTFGMEHAYTNNYEFRGSTGRLWMNRVFTPPATYQP 285
Query: 202 L 202
+
Sbjct: 286 V 286
>pdb|3RC9|A Chain A, Crystal Structure Of The K102a Mutant Of Kijd10, A
3-Ketoreductase From Actinomadura Kijaniata In Complex
With Tdp-Benzene And Nadp
Length = 350
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 149 HKRHRDLILGPYLVSVLKEGREIKVRNRMRKLYTNN-------GSNWVHVVFEHPATFQT 201
H+R RD+++G + ++G ++ M YTNN G W++ VF PAT+Q
Sbjct: 226 HERDRDVVVGGNALLTTRQGVTAQLTFGMEHAYTNNYEFRGSTGRLWMNRVFTPPATYQP 285
Query: 202 L 202
+
Sbjct: 286 V 286
>pdb|3RBV|A Chain A, Crystal Structure Of Kijd10, A 3-Ketoreductase From
Actinomadura Kijaniata Incomplex With Nadp
pdb|3RC1|A Chain A, Crystal Structure Of Kijd10, A 3-Ketoreductase From
Actinomadura Kijaniata Incomplex With Nadp And
Tdp-Benzene
pdb|3RC2|A Chain A, Crystal Structure Of Kijd10, A 3-Ketoreductase From
Actinomadura Kijaniata In Complex With Tdp-Benzene And
Nadp; Open Conformation
Length = 350
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 149 HKRHRDLILGPYLVSVLKEGREIKVRNRMRKLYTNN-------GSNWVHVVFEHPATFQT 201
H+R RD+++G + ++G ++ M YTNN G W++ VF PAT+Q
Sbjct: 226 HERDRDVVVGGNALLTTRQGVTAQLTFGMEHAYTNNYEFRGSTGRLWMNRVFTPPATYQP 285
Query: 202 L 202
+
Sbjct: 286 V 286
>pdb|3RC7|A Chain A, Crystal Structure Of The Y186f Mutant Of Kijd10, A
3-Ketoreductase From Actinomadura Kijaniata In Complex
With Tdp-Benzene And Nadp
Length = 350
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 149 HKRHRDLILGPYLVSVLKEGREIKVRNRMRKLYTNN-------GSNWVHVVFEHPATFQT 201
H+R RD+++G + ++G ++ M YTNN G W++ VF PAT+Q
Sbjct: 226 HERDRDVVVGGNALLTTRQGVTAQLTFGMEHAYTNNYEFRGSTGRLWMNRVFTPPATYQP 285
Query: 202 L 202
+
Sbjct: 286 V 286
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 218 AFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMAN-----------LLGYDLYDLE 266
AFS DF + A ++G LYG G GKS ++AAMA+ LL + + ++
Sbjct: 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID 195
Query: 267 LTAVKDNTELRKLLIETSSKSIIVIEDIDC 296
+ N +++ + + +++++DI
Sbjct: 196 VKNAISNGSVKEEIDAVKNVPVLILDDIGA 225
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 236 GYLLYGPPGTGKSTMIAAMANLLGYDLY-----DLELTAVKDNTELRKLLIETSSK---S 287
G LLYGPPGTGKS + A+A + DL + ++ +L K L + + S
Sbjct: 62 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 121
Query: 288 IIVIEDIDCSLDLTGQR 304
II I+++D LTG R
Sbjct: 122 IIFIDEVDA---LTGTR 135
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLY------DLELTAVKDNTELRKLLIETSSK-- 286
RG LL+GPPGTGKS + A+A + DL + ++ +L K L + + +
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Query: 287 -SIIVIEDIDCSLDLTGQR 304
SII I++ID L G R
Sbjct: 228 PSIIFIDEIDS---LCGSR 243
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLY------DLELTAVKDNTELRKLLIETSSK-- 286
RG LL+GPPGTGKS + A+A + DL + ++ +L K L + + +
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 105
Query: 287 -SIIVIEDIDCSLDLTGQR 304
SII I++ID L G R
Sbjct: 106 PSIIFIDEIDS---LCGSR 121
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 231 RAWKRGYLLYGPPGTGKSTMIAAM-----ANLLGYDLYDLELTAVKDNTELRKLLIETS- 284
RA +G LL+GPPG GK+ + A+ A L L V D +L + L +
Sbjct: 51 RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR 110
Query: 285 --SKSIIVIEDID 295
SII I+++D
Sbjct: 111 HMQPSIIFIDEVD 123
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 236 GYLLYGPPGTGKSTMIAAMANLLGYDLY-----DLELTAVKDNTELRKLLIETSSK---S 287
G LLYGPPGTGKS + A+A + DL + ++ +L K L + + S
Sbjct: 86 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 145
Query: 288 IIVIEDIDCSLDLTGQR 304
II I+ +D LTG R
Sbjct: 146 IIFIDQVDA---LTGTR 159
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 236 GYLLYGPPGTGKSTMIAAMANLLGYDLY-----DLELTAVKDNTELRKLLIETSSK---S 287
G LLYGPPGTGKS + A+A + DL + ++ +L K L + + S
Sbjct: 53 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 112
Query: 288 IIVIEDIDCSLDLTGQR 304
II I+ +D LTG R
Sbjct: 113 IIFIDQVDA---LTGTR 126
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 236 GYLLYGPPGTGKSTMIAAMANLLGYDLY-----DLELTAVKDNTELRKLLIETSSK---S 287
G LLYGPPGTGKS + A+A + DL + ++ +L K L + + S
Sbjct: 71 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 130
Query: 288 IIVIEDIDCSLDLTGQR 304
II I+ +D LTG R
Sbjct: 131 IIFIDQVDA---LTGTR 144
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 231 RAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTA-----VKDNTELRKLLIETS- 284
R +G LL+GPPGTGK+ + +A+ G + + ++ V + ++ + L +
Sbjct: 114 RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVAR 173
Query: 285 --SKSIIVIEDIDCSLDLTG 302
++I I++ID L G
Sbjct: 174 CQQPAVIFIDEIDSLLSQRG 193
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 238 LLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKD 272
L YGPPGTGK++ I A+A + Y LEL A D
Sbjct: 50 LFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD 87
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 228 RIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD 261
R G+ R L+ G PGTGK+ + MA LG D
Sbjct: 64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 25/85 (29%)
Query: 177 MRKLYTNNGSNWVHVVFE----------HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFY 226
++K ++ S+ + V+F HP TF ++ ++K+ + L A S+ E
Sbjct: 153 LKKYHSGPASSLIEVLFGRSAPSPASEIHPLTFFNTCLDTSQKEAV---LFALSQKE--- 206
Query: 227 ARIGRAWKRGYLLYGPPGTGKSTMI 251
+++GPPGTGK+T +
Sbjct: 207 ---------LAIIHGPPGTGKTTTV 222
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 25/85 (29%)
Query: 177 MRKLYTNNGSNWVHVVFE----------HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFY 226
++K ++ S+ + V+F HP TF ++ ++K+ + L A S+ E
Sbjct: 153 LKKYHSGPASSLIEVLFGRSAPSPASEIHPLTFFNTCLDTSQKEAV---LFALSQKE--- 206
Query: 227 ARIGRAWKRGYLLYGPPGTGKSTMI 251
+++GPPGTGK+T +
Sbjct: 207 ---------LAIIHGPPGTGKTTTV 222
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 238 LLYGPPGTGK-STMIAAMANLLGYDLYD---LELTA 269
L YGPPGTGK ST++A L G DL LEL A
Sbjct: 62 LFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 235 RGYLLYGPPGTGKSTMIAAMANLLG 259
R LL GPPGTGK+ + A+A LG
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELG 88
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 235 RGYLLYGPPGTGKSTMIAAMANLLG 259
R LL GPPGTGK+ + A+A LG
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELG 102
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 238 LLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKS-IIVIEDI 294
LL+GPPG GK+T+ +A+ LG +L A++ +L +L + + I+ I++I
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEI 99
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 238 LLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKS-IIVIEDI 294
LL+GPPG GK+T+ +A+ LG +L A++ +L +L + + I+ I++I
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEI 99
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 238 LLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKS-IIVIEDI 294
LL+GPPG GK+T+ +A+ LG +L A++ +L +L + + I+ I++I
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEI 99
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 233 WKRGYLLYGPPGTGKSTMIAAMANLL 258
KR LL G PGTGKS + AMA LL
Sbjct: 59 QKRHVLLIGEPGTGKSMLGQAMAELL 84
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 14/73 (19%)
Query: 198 TFQTLA--MEPAEKKEIIDD--LIAFSKSEDFYARIGRAWKRGYL----LYGPPGTGKST 249
TFQ LA M P + I L+A K + RA + G+L L+GPPGTGK+T
Sbjct: 12 TFQPLAARMRPENLAQYIGQQHLLAAGKP------LPRAIEAGHLHSMILWGPPGTGKTT 65
Query: 250 MIAAMANLLGYDL 262
+ +A D+
Sbjct: 66 LAEVIARYANADV 78
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 234 KRGYLLYGPPGTGKSTMI-AAMANLLGYDLYDLELTAVKDNT 274
KRG +L GPPG+GK+ ++ A+ N YD+ + + KD T
Sbjct: 1048 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFS--KDTT 1087
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 232 AWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYD 264
A KR L GP G GKST+ +A L + YD
Sbjct: 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 234 KRGYLLYGPPGTGKSTMI-AAMANLLGYDLYDLELTAVKDNT 274
KRG +L GPPG+GK+ ++ A+ N YD+ + + KD T
Sbjct: 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFS--KDTT 1306
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate Kinase
From Agrobacterium Tumefaciens, Northeast Structural
Genomics Target Atr62
Length = 191
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 238 LLYGPPGTGKSTMIAAMANLLG 259
LL G PG+GKST+ A+ANL G
Sbjct: 13 LLSGHPGSGKSTIAEALANLPG 34
>pdb|1SVL|A Chain A, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Adp
pdb|1SVL|B Chain B, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Adp
pdb|1SVL|C Chain C, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Adp
pdb|1SVM|A Chain A, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|B Chain B, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|C Chain C, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|D Chain D, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|E Chain E, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|F Chain F, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVO|A Chain A, Structure Of Sv40 Large T Antigen Helicase Domain
pdb|1SVO|B Chain B, Structure Of Sv40 Large T Antigen Helicase Domain
Length = 377
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIED 293
KR +L GP +GK+T+ AA+ L G ++ L + N EL + + ++V ED
Sbjct: 169 KRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAI----DQFLVVFED 224
Query: 294 I 294
+
Sbjct: 225 V 225
>pdb|2H1L|A Chain A, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|B Chain B, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|C Chain C, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|D Chain D, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|E Chain E, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|F Chain F, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|G Chain G, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|H Chain H, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|I Chain I, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|J Chain J, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|K Chain K, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|L Chain L, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
Length = 370
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIED 293
KR +L GP +GK+T+ AA+ L G ++ L + N EL + + ++V ED
Sbjct: 162 KRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAI----DQFLVVFED 217
Query: 294 I 294
+
Sbjct: 218 V 218
>pdb|1N25|A Chain A, Crystal Structure Of The Sv40 Large T Antigen Helicase
Domain
pdb|1N25|B Chain B, Crystal Structure Of The Sv40 Large T Antigen Helicase
Domain
Length = 368
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIED 293
KR +L GP +GK+T+ AA+ L G ++ L + N EL + + ++V ED
Sbjct: 160 KRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAI----DQFLVVFED 215
Query: 294 I 294
+
Sbjct: 216 V 216
>pdb|4E2I|A Chain A, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|B Chain B, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|C Chain C, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|D Chain D, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|E Chain E, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|F Chain F, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|G Chain G, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|H Chain H, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|I Chain I, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|J Chain J, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|K Chain K, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|L Chain L, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
Length = 362
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIED 293
KR +L GP +GK+T+ AA+ L G ++ L + N EL + + ++V ED
Sbjct: 154 KRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAI----DQFLVVFED 209
Query: 294 I 294
+
Sbjct: 210 V 210
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 224 DFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTE 275
+ + R+ + L+ GP G+GKST +AAM + L Y LT ++D E
Sbjct: 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT-IEDPIE 163
>pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 354
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 238 LLYGPPGTGKST-MIAAMANLLGYDLYDLEL 267
LLYGP GTGK T +A + ++ G +Y L++
Sbjct: 40 LLYGPNGTGKKTRCMALLESIFGPGVYRLKI 70
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 239 LYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIED----I 294
L GP G GKST++A + YD E+ D +E++ L E + I ++
Sbjct: 1110 LVGPSGCGKSTVVALLERF--YDTLGGEI--FIDGSEIKTLNPEHTRSQIAIVSQEPTLF 1165
Query: 295 DCSL 298
DCS+
Sbjct: 1166 DCSI 1169
>pdb|2CCJ|A Chain A, Crystal Structure Of S. Aureus Thymidylate Kinase
Complexed With Thymidine Monophosphate
pdb|2CCJ|B Chain B, Crystal Structure Of S. Aureus Thymidylate Kinase
Complexed With Thymidine Monophosphate
pdb|2CCK|A Chain A, Crystal Structure Of Unliganded S. Aureus Thymidylate
Kinase
pdb|2CCK|B Chain B, Crystal Structure Of Unliganded S. Aureus Thymidylate
Kinase
pdb|4GFD|A Chain A, Thymidylate Kinase (Tmk) From S. Aureus In Complex With
Tk-666
pdb|4GFD|B Chain B, Thymidylate Kinase (Tmk) From S. Aureus In Complex With
Tk-666
pdb|4GSY|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus Bound To Inhibitor.
pdb|4GSY|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus Bound To Inhibitor.
pdb|4HDC|A Chain A, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk:
Compound 41)
pdb|4HDC|B Chain B, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk:
Compound 41)
pdb|4HEJ|A Chain A, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk):
Compund 16
pdb|4HEJ|B Chain B, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk):
Compund 16
pdb|4HLC|A Chain A, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 5
pdb|4HLC|B Chain B, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 5
pdb|4HLD|A Chain A, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 11
pdb|4HLD|B Chain B, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 11
Length = 205
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 241 GPPGTGKSTMIAAMANLLGYDLYDLELT----AVKDNTELRKLLIETSSKSI 288
GP G+GK+T+I + + L D YD+ +T V E+RK+++E + I
Sbjct: 9 GPEGSGKTTVINEVYHRLVKD-YDVIMTREPGGVPTGEEIRKIVLEGNDMDI 59
>pdb|4DWJ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|C Chain C, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|D Chain D, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|E Chain E, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|F Chain F, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|G Chain G, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|H Chain H, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4EAQ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4EAQ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4F4I|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
pdb|4F4I|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
Length = 229
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 241 GPPGTGKSTMIAAMANLLGYDLYDLELT----AVKDNTELRKLLIETSSKSI 288
GP G+GK+T+I + + L D YD+ +T V E+RK+++E + I
Sbjct: 33 GPEGSGKTTVINEVYHRLVKD-YDVIMTREPGGVPTGEEIRKIVLEGNDMDI 83
>pdb|2CCG|A Chain A, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
pdb|2CCG|B Chain B, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
Length = 225
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 241 GPPGTGKSTMIAAMANLLGYDLYDLELT----AVKDNTELRKLLIETSSKSI 288
GP G+GK+T+I + + L D YD+ +T V E+RK+++E + I
Sbjct: 29 GPEGSGKTTVINEVYHRLVKD-YDVIMTREPGGVPTGEEIRKIVLEGNDMDI 79
>pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Magnesium Chelatase
pdb|2X31|G Chain G, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|H Chain H, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|I Chain I, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|J Chain J, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|K Chain K, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|L Chain L, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
Length = 350
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 236 GYLLYGPPGTGKSTMIAAMANLL 258
G L++G GTGKST + A+A LL
Sbjct: 47 GVLVFGDRGTGKSTAVRALAALL 69
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 238 LLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIV 290
+L G G GKST+ L G + +++E + ++T R+++++ ++IV
Sbjct: 16 MLLGESGVGKSTLAGTFGGLQGDNAHEMENS---EDTYERRIMVDKEEVTLIV 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,453,227
Number of Sequences: 62578
Number of extensions: 554597
Number of successful extensions: 1540
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1448
Number of HSP's gapped (non-prelim): 87
length of query: 482
length of database: 14,973,337
effective HSP length: 103
effective length of query: 379
effective length of database: 8,527,803
effective search space: 3232037337
effective search space used: 3232037337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)