BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011573
(482 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 129 bits (323), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 160/305 (52%), Gaps = 26/305 (8%)
Query: 163 SVLKEGREIKVRNRMRK--LYTNNGSNWVHVVFEHPA---TFQTLAMEPAEKKEIIDDLI 217
++++E +E+ + K +YT+ G++W F HP ++ ++ + + II D+
Sbjct: 167 NLIEEAKEMALEKEEGKTLIYTSMGTDWRR--FGHPRRKRPISSVILDKGKSELIIQDVK 224
Query: 218 AFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELT--AVKDNTE 275
F + D+Y G ++RGYLLYGPPGTGKS+ I A+A L + L L +V D T
Sbjct: 225 KFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALAGELQLSICILNLAGKSVSD-TS 283
Query: 276 LRKLLIETSSKSIIVIEDIDCSL-----DLTGQRRKKKEKKEDEGNDKDPRQKLGKEERE 330
L +LL +SII++EDID ++ DL+ + G + + G
Sbjct: 284 LNQLLATAPQRSIILLEDIDSAIQTGNHDLSAKSNSANAPSISSGGLQY-QGYYGNPSVS 342
Query: 331 TNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHC-SY 389
+ S +T SGLLN +DG+ ++ G R++ TTN++EKLD LIR GR+D IE+ C SY
Sbjct: 343 SGGSALTFSGLLNALDGVAASEG--RILFMTTNHLEKLDKVLIRPGRVDLQIEIGLCSSY 400
Query: 390 EAFKVLAKNYLNIESHNLFDKIGELLGEAKMTPADVAEHLMPKTFPADVEFSLRSLNQAL 449
+ ++ K Y +L + E L K +PA + + M T+ + S+ ++N
Sbjct: 401 QMEQMFLKFYPT--DFDLAKQFVEKLENYKFSPAQLQAYFM--TYSNN---SIEAINNLN 453
Query: 450 ELAKE 454
EL K+
Sbjct: 454 ELIKK 458
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 142/282 (50%), Gaps = 29/282 (10%)
Query: 163 SVLKEGREIKVRNRMRK--LYTNNGSNWVHVVFEHPAT-FQTLAMEPAEKKEIIDDLIAF 219
++L+E RE+ ++ + +YT G+ W F ++ +E + I+DD+ F
Sbjct: 149 NILQEARELALKQEEGRTVMYTAMGAEWRPFGFPRRRRPLSSVVLESGVAERIVDDVKEF 208
Query: 220 SKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELT--AVKDNTELR 277
+ +Y G ++RGYLLYGPPG GKS+ I A+A LGY + + L+ ++ D+ L
Sbjct: 209 IGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELGYSICLMSLSDRSLSDD-RLN 267
Query: 278 KLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVT 337
LL +SII++ED+D + +E E + Q +G+ +T
Sbjct: 268 HLLSVAPQQSIILLEDVDAAF-------VSRELLPTE--NPLAYQGMGR---------LT 309
Query: 338 LSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAK 397
SGLLN +DG+ A R++ TTN+IE+LDPAL+R GR+D + HCS+ + +
Sbjct: 310 FSGLLNALDGV--ASSEARIVFMTTNFIERLDPALVRPGRVDLKQYVGHCSHWQLTQMFR 367
Query: 398 NYLNIESHNLFDKIGE--LLGEAKMTPADVAEHLMP-KTFPA 436
+ ES D E L ++ A V H M KT PA
Sbjct: 368 RFYPQESAAEADHFSEQALAAHTDLSAAQVQGHFMLYKTDPA 409
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 142/281 (50%), Gaps = 45/281 (16%)
Query: 180 LYTNNGSNWVHVVFEHPAT---FQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRG 236
+YT + W F HP + ++ +E KK I DD+ F ++ +Y G ++RG
Sbjct: 187 IYTAWATEWKP--FGHPRSKRMLSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRG 244
Query: 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDLELT--AVKDNTELRKLLIETSSKSIIVIEDI 294
YLLYGPPG+GK++ + A+A L YD+ L L + D+ L LL K+++++ED+
Sbjct: 245 YLLYGPPGSGKTSFLYALAGELDYDICVLNLAEKGLTDD-RLNHLLSNVPPKAVVLLEDV 303
Query: 295 DCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGG 354
D + + +E+ + G ++ VT SGLLN +DG+ S+
Sbjct: 304 DSAF-------QGRERSGEVG----------------FHANVTFSGLLNALDGVTSS--D 338
Query: 355 ERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGEL 414
ER+I TTN+ EKLDPAL+R GR+D L + + E + + + S + D + ++
Sbjct: 339 ERIIFMTTNHPEKLDPALVRPGRVDVKAYLGNATPEQVREMFTRFYG-HSPEMADDLSDI 397
Query: 415 LGEAKMTPADV-AEHLMPKTFPADVEFSLRSLNQALELAKE 454
+ + A + +M K+ PAD A+++AKE
Sbjct: 398 VCPKNTSMASLQGLFVMNKSSPAD----------AVDMAKE 428
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 112 bits (280), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 119/230 (51%), Gaps = 25/230 (10%)
Query: 163 SVLKEGREIKVRNRMRK--LYTNNGSNWVHVVF-EHPATFQTLAMEPAEKKEIIDDLIAF 219
++L+E RE+ ++ ++ K +Y G+ W F ++ +E ++I+ D+ F
Sbjct: 149 NILQEARELALKQQVGKTVMYNAVGAEWRQFGFPRRRRPLSSVVLEQGISEKIVQDVKGF 208
Query: 220 SKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDL-YDLELTAVKDNTELRK 278
++ +Y+ G ++RGYLLYGPPG GKS+ I A+A L Y + + + L
Sbjct: 209 IENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGELEYSICLMSLSDSSLSDDRLNH 268
Query: 279 LLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTL 338
LL +SII++ED+D + + N ++P G ++T
Sbjct: 269 LLSVAPQQSIILLEDVDAAF------------VSRDLNKQNPTAYQGM-------GRLTF 309
Query: 339 SGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCS 388
SGLLN +DG+ A R++ TTN+I++LDPALIR GR+D + HC+
Sbjct: 310 SGLLNALDGV--ASTEARIVFMTTNHIDRLDPALIRPGRVDVKQYVGHCT 357
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 136/279 (48%), Gaps = 37/279 (13%)
Query: 163 SVLKEGREIKVRNRMRK--LYTNNGSNWVHVVFEHPA---TFQTLAMEPAEKKEIIDDLI 217
++L+E RE+ ++ K +YT GS W F +P ++ +E + I+ D+
Sbjct: 149 NILEEARELALQQEEGKTVMYTAVGSEWRP--FGYPRRRRPLNSVVLEQGVTERIVRDIR 206
Query: 218 AFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDL-YDLELTAVKDNTEL 276
F + +Y G ++RGYLLYGPPG GKS+ I A+A L + + + + L
Sbjct: 207 EFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELQHSICLLSLTDSSLSDDRL 266
Query: 277 RKLLIETSSKSIIVIEDIDCSL---DLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNN 333
LL +S++++ED+D + DL + K Q LG+
Sbjct: 267 NHLLSVAPQQSLVLLEDVDAAFLSRDLAAENPIKY-------------QGLGR------- 306
Query: 334 SQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFK 393
+T SGLLN +DG+ A R++ TTN+I++LDPALIR GR+D + HCS
Sbjct: 307 --LTFSGLLNALDGV--ASTEARIVFMTTNHIDRLDPALIRPGRVDMKEYVGHCSRWQLT 362
Query: 394 VLAKNYLNIESHNLFDKIGE--LLGEAKMTPADVAEHLM 430
+ + + ++ +L + + L +++PA V + M
Sbjct: 363 QMFQRFYPGQATSLAENFADRVLQATTQISPAQVQGYFM 401
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 136/279 (48%), Gaps = 37/279 (13%)
Query: 163 SVLKEGREIKVRNRMRK--LYTNNGSNWVHVVFEHPA---TFQTLAMEPAEKKEIIDDLI 217
++L+E R + ++ K +YT GS W F +P ++ ++ I+ D+
Sbjct: 149 NILEEARALALQQEEGKTVMYTAVGSEWR--TFGYPRRRRPLDSVVLQQGLADRIVKDIR 206
Query: 218 AFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDL-YDLELTAVKDNTEL 276
F + +Y G ++RGYLLYGPPG GKS+ I A+A L + + + + L
Sbjct: 207 EFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSLSDDRL 266
Query: 277 RKLLIETSSKSIIVIEDIDCSL---DLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNN 333
LL +S++++ED+D + DL + K Q LG+
Sbjct: 267 NHLLSVAPQQSLVLLEDVDAAFLSRDLAVENPIKY-------------QGLGR------- 306
Query: 334 SQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFK 393
+T SGLLN +DG+ A R++ TTNYI++LDPALIR GR+D + +CS+
Sbjct: 307 --LTFSGLLNALDGV--ASTEARIVFMTTNYIDRLDPALIRPGRVDLKEYVGYCSHWQLT 362
Query: 394 VLAKNYLNIESHNLFDKIGE--LLGEAKMTPADVAEHLM 430
+ + + ++ +L + E L ++++PA V + M
Sbjct: 363 QMFQRFYPGQAPSLAENFAEHVLKATSEISPAQVQGYFM 401
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 136/279 (48%), Gaps = 37/279 (13%)
Query: 163 SVLKEGREIKVRNRMRK--LYTNNGSNWVHVVFEHPA---TFQTLAMEPAEKKEIIDDLI 217
++L+E RE+ ++ K +YT GS W F +P ++ ++ I+ D+
Sbjct: 149 NILEEARELALQQEEGKTVMYTAVGSEWRP--FGYPRRRRPLNSVVLQQGLADRIVRDVQ 206
Query: 218 AFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDL-YDLELTAVKDNTEL 276
F + +Y G ++RGYLLYGPPG GKS+ I A+A L + + + + L
Sbjct: 207 EFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSLSDDRL 266
Query: 277 RKLLIETSSKSIIVIEDIDCSL---DLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNN 333
LL +S++++ED+D + DL + K Q LG+
Sbjct: 267 NHLLSVAPQQSLVLLEDVDAAFLSRDLAVENPVKY-------------QGLGR------- 306
Query: 334 SQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFK 393
+T SGLLN +DG+ A R++ TTN++++LDPALIR GR+D + +CS+
Sbjct: 307 --LTFSGLLNALDGV--ASTEARIVFMTTNHVDRLDPALIRPGRVDLKEYVGYCSHWQLT 362
Query: 394 VLAKNYLNIESHNLFDKIGE--LLGEAKMTPADVAEHLM 430
+ + + ++ +L + E L +++PA V + M
Sbjct: 363 QMFQRFYPGQAPSLAENFAEHVLRATNQISPAQVQGYFM 401
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 105 bits (263), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 129/244 (52%), Gaps = 36/244 (14%)
Query: 164 VLKEGREIKVRNRMRK--LYTNNGSNWVHVVFEHPAT---FQTLAMEPAEKKEIIDDLIA 218
+L E ++I ++ K +YT+ G W F P ++ ++ K+ I+DD+
Sbjct: 187 ILNEAKDIALKTTEGKTVIYTSFGPEWRK--FGQPKAKRMLPSVILDSGIKEGILDDVYD 244
Query: 219 FSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK-DNTELR 277
F K+ +Y+ G ++RGYLLYGPPG+GK++ I A+A L Y++ L L+ + L
Sbjct: 245 FMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELDYNICILNLSENNLTDDRLN 304
Query: 278 KLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVT 337
L+ +SI+++EDID + + K+ + ++G +S VT
Sbjct: 305 HLMNNMPERSILLLEDIDAAFN-------KRSQTGEQG----------------FHSSVT 341
Query: 338 LSGLLNFIDGLWSACGGERLIVF-TTNYIEKLDPALIRKGRMDKHIELSHCS-YEAFKVL 395
SGLLN +DG+ S+ E I F TTN+ EKLD A++R GR+D + + + + Y+ K+
Sbjct: 342 FSGLLNALDGVTSS---EETITFMTTNHPEKLDAAIMRPGRIDYKVFVGNATPYQVEKMF 398
Query: 396 AKNY 399
K Y
Sbjct: 399 MKFY 402
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 124/232 (53%), Gaps = 27/232 (11%)
Query: 180 LYTNNGS-NWVHVVFEHPATFQTLA---MEPAEKKEIIDDLIAFSKSEDFYARIGRAWKR 235
+Y N G+ NW F +P + ++L+ + K ++I+D+ +F +E +Y G ++R
Sbjct: 165 IYINGGNGNWER--FGNPRSIRSLSSVILADDLKSKLIEDIKSFITNESWYRNRGIPYRR 222
Query: 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK-DNTELRKLLIETSSKSIIVIEDI 294
GYLLYG PG GKS++I A+A L D+ + L++ D+ ++ LL KSI++IEDI
Sbjct: 223 GYLLYGEPGNGKSSLINAIAGELNLDICIVSLSSKDIDDKQINHLLNNAPPKSILLIEDI 282
Query: 295 DCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGG 354
D + K D NN+ +T SGLLN +DG+ S G
Sbjct: 283 DAAF-------KSHRDNVDS-----------NNNNSNNNNSLTYSGLLNALDGVASQEG- 323
Query: 355 ERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHN 406
R++ TTN IE LD ALIR+GR+D I++S+ + L ++ N+ + N
Sbjct: 324 -RILFMTTNKIELLDSALIREGRIDLKIKVSNATKSQAAQLFTHFYNLPTDN 374
>sp|Q5UR45|YL572_MIMIV Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L572 PE=3 SV=1
Length = 196
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 114/207 (55%), Gaps = 20/207 (9%)
Query: 250 MIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSK-SIIVIEDIDCSLDLTGQRRKKK 308
MI A++ ++ L L ++D+ EL LL + K +I+V+EDIDC+ + R K++
Sbjct: 1 MIKAISTHTKRHIHYLILNNIQDDNELINLLNAVNCKETILVLEDIDCASEAVKSRAKEE 60
Query: 309 EKKEDEGND-------KDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFT 361
E ++ D K +L K E+ S++TLSG+LN +DG++++ G R+++ T
Sbjct: 61 ETVVEKVTDDKSTLENKILADQLKKVEKV---SKLTLSGILNSLDGIFNSEG--RIVIMT 115
Query: 362 TNYIEKLDPALIRKGRMDKHIELSHCS-YEAFKVLAKNYLNIESHNLFDKIGELLGEAKM 420
TN+ E LDPALIR+GR+D IE S+C Y+ +AK Y N N I +
Sbjct: 116 TNHSEVLDPALIRRGRIDMQIEFSNCDRYQ----IAKMYENFYGKNADSDILSKIPSDIY 171
Query: 421 TPADVAEHLMPKTFPADVEFSLRSLNQ 447
+PA V+ L+ ++ + E SL L Q
Sbjct: 172 SPAHVSGLLL--SYRNNPENSLIELTQ 196
>sp|Q5UPR4|YR776_MIMIV Uncharacterized protein R776 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R776 PE=4 SV=1
Length = 314
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 177 MRKLYTNNGSNWVHVVFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRG 236
MR YT+N +NW + + P F + E + ++ D+ F ++ED Y +G ++RG
Sbjct: 145 MRMCYTSNNNNWSYPIIRRPCKFLDSNLT-TEMRSVLKDVDVFMRNEDTYRELGANYRRG 203
Query: 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTE--LRKLLIETSSKSIIVIEDI 294
LLYG G GK+ +I+ ++N G D Y L L + KD ++ L L ++SI+VIE+I
Sbjct: 204 MLLYGESGCGKTGLISIISNKYGMDSYILNLNS-KDMSDSVLISLASNVKARSILVIEEI 262
Query: 295 D 295
D
Sbjct: 263 D 263
>sp|Q2SF13|FTSH_HAHCH ATP-dependent zinc metalloprotease FtsH OS=Hahella chejuensis
(strain KCTC 2396) GN=ftsH PE=3 SV=1
Length = 619
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 35/196 (17%)
Query: 198 TFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANL 257
TF +A + K+E+ +L+ + + D + R+G RG LL GPPGTGK+ + A+A
Sbjct: 174 TFDEVAGQTNAKREV-QELVEYLRDPDRFHRVGALAPRGVLLMGPPGTGKTLLARALAGE 232
Query: 258 LGYDLYDL------ELTAVKDNTELRKL--LIETSSKSIIVIEDIDCSLDLTGQRRKKKE 309
G + Y + E+ + +R+L + + +S SII I+++D
Sbjct: 233 AGVNFYPMSASEFIEVFVGVGASRVRQLFKIAKENSPSIIFIDELDSV------------ 280
Query: 310 KKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVF-TTNYIEKL 368
G + G +ERE TL+ +L +DG G + +IV TN + L
Sbjct: 281 -----GRTRGAGYGGGHDEREQ-----TLNQILAEMDGF---AGHDAVIVLAATNRPDVL 327
Query: 369 DPALIRKGRMDKHIEL 384
DPAL+R GR D+H+ L
Sbjct: 328 DPALMRPGRFDRHVTL 343
>sp|Q7URM7|FTSH2_RHOBA ATP-dependent zinc metalloprotease FtsH 2 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH2 PE=3 SV=1
Length = 728
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 44/246 (17%)
Query: 196 PATFQTLA-MEPA--EKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIA 252
P TF+ +A +E A E +E++D F K+ + Y +G +G LL GPPGTGK+ +
Sbjct: 247 PTTFEDVAGIEEAVDEVREVVD----FLKNSEKYQSLGGRIPKGVLLVGPPGTGKTLLAK 302
Query: 253 AMANLLGYDLYDL------ELTAVKDNTELRKLLIETSSKS--IIVIEDIDCSLDLTGQR 304
A+A G + L E+ +R + + +++ II I+++D
Sbjct: 303 AIAGEAGVPFFSLSGSDFVEMFVGVGAARVRDMFTQAVNRAPCIIFIDELDAL------- 355
Query: 305 RKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNY 364
G + G +ERE TL+ LL +DG S G ++V TN
Sbjct: 356 ----------GKSRSGSVVGGHDEREQ-----TLNALLVEMDGFDSNSG--VIVVAATNR 398
Query: 365 IEKLDPALIRKGRMDKHIELSHCSYEAF-KVLAKNYLNIESHNLFDKIGELLGEAKMTPA 423
E LDPAL+R GR D+H+ + ++LA + N++ D+ EL G A +T
Sbjct: 399 PETLDPALLRPGRFDRHVLVDRPDVAGREEILAVHVKNVK----LDETVELKGIASITSG 454
Query: 424 DVAEHL 429
V L
Sbjct: 455 FVGADL 460
>sp|D3FFN2|FTSH_MYCGH ATP-dependent zinc metalloprotease FtsH OS=Mycoplasma gallisepticum
(strain R(high / passage 156)) GN=ftsH PE=3 SV=1
Length = 765
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 107/224 (47%), Gaps = 36/224 (16%)
Query: 208 EKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLEL 267
EK E+I+ L+ + K Y ++G RG +LYGPPGTGK+ + A+A G + +
Sbjct: 282 EKSELIE-LVDYLKRPGKYVQMGARTPRGVVLYGPPGTGKTLLAKAVAGEAGVPFFQVTG 340
Query: 268 TAVKD------NTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKD 319
+A +D +R L + ++ II I++ID G +R K E D+
Sbjct: 341 SAFEDMLVGVGAKRVRNLFAKAKKAAPCIIFIDEIDS----VGSKRGKYEISAGSATDQ- 395
Query: 320 PRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMD 379
TL+ LL +DG + G +++ TN ++ LD AL+R GR D
Sbjct: 396 -----------------TLNQLLAEMDGFSTRTG--IIVMAATNRLDVLDDALLRPGRFD 436
Query: 380 KHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLGEAKMTPA 423
+HI+++ + + + K ++ + N+ K+ LL A+ TP
Sbjct: 437 RHIQVNLPDIKEREAILK--IHSRNKNISSKV-NLLDIARRTPG 477
>sp|C8W731|FTSH_ATOPD ATP-dependent zinc metalloprotease FtsH OS=Atopobium parvulum
(strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546)
GN=ftsH PE=3 SV=1
Length = 644
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 34/195 (17%)
Query: 198 TFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANL 257
TF+ +A + E KE + ++++F K+ D Y IG RG LL GPPGTGK+ + A+A
Sbjct: 182 TFKDVAGQ-EEAKESMQEIVSFLKTPDKYKEIGARCPRGALLVGPPGTGKTLIAKAVAGE 240
Query: 258 LGYDLYDL------ELTAVKDNTELRKLLIETSSKS--IIVIEDIDCSLDLTGQRRKKKE 309
G + + E+ + ++R L + + K+ II I++ID G+RR
Sbjct: 241 AGVPFFQIAGSEFVEMFVGRGAAKVRDLFKQANEKAPCIIFIDEIDA----VGKRRDASL 296
Query: 310 KKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLD 369
D ERE TL+ LL+ +DG + G +++ TN E LD
Sbjct: 297 NSND--------------EREQ-----TLNQLLSEMDGFDNHKG--IVVLAATNRPETLD 335
Query: 370 PALIRKGRMDKHIEL 384
AL+R GR D+ I +
Sbjct: 336 KALLRPGRFDRRIPV 350
>sp|A9KIG5|FTSH_CLOPH ATP-dependent zinc metalloprotease FtsH OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=ftsH PE=3 SV=1
Length = 577
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 32/201 (15%)
Query: 207 AEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL- 265
AE K ++ D+I F K + Y+ +G +G +LYGPPGTGK+ + A+A G Y +
Sbjct: 152 AEAKSMVGDIIDFIKEPEKYSALGARMPKGVMLYGPPGTGKTLIAKAIATEAGVPFYAMS 211
Query: 266 -----ELTAVKDNTELRKLL--IETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDK 318
++ + +R L + S K++I I++ID G++R + ++ D+
Sbjct: 212 GSDFVQMYVGVGASRIRTLFNKAKKSEKAVIFIDEIDA----IGKKRARSTSASNDERDQ 267
Query: 319 DPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRM 378
TL+ LL + G G +++ TN ++ LD AL+R GR
Sbjct: 268 ------------------TLNALLTEMSGFHENKG--IVVIGATNRLDTLDEALLRPGRF 307
Query: 379 DKHIELSHCSYEAFKVLAKNY 399
D+ IE+ A K + K Y
Sbjct: 308 DRQIEVGLPDILARKKILKLY 328
>sp|P46465|PRS6A_ORYSJ 26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp.
japonica GN=TBP1 PE=2 SV=2
Length = 429
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 91/191 (47%), Gaps = 34/191 (17%)
Query: 210 KEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTM---IAAMANLLGYDLYDLE 266
+E+++ ++ +D + ++G +G LLYGPPGTGK+ M AA N L +
Sbjct: 186 QELVEAIVLPMTHKDRFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ 245
Query: 267 LTA--VKDNTELRK---LLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPR 321
L + D +L + L + S II I++ID G +R E D
Sbjct: 246 LVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDA----IGTKRFDSEVSGD-------- 293
Query: 322 QKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERL-IVFTTNYIEKLDPALIRKGRMDK 380
RE Q T+ LLN +DG S ER+ ++ TN + LDPAL+R GR+D+
Sbjct: 294 -------REV---QRTMLELLNQLDGFSS---DERIKVIAATNRADILDPALMRSGRLDR 340
Query: 381 HIELSHCSYEA 391
IE H S EA
Sbjct: 341 KIEFPHPSEEA 351
>sp|A0LR74|FTSH_ACIC1 ATP-dependent zinc metalloprotease FtsH OS=Acidothermus
cellulolyticus (strain ATCC 43068 / 11B) GN=ftsH PE=3
SV=1
Length = 666
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 85/186 (45%), Gaps = 35/186 (18%)
Query: 207 AEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYD-- 264
AE E++D F +S + Y R G A RG L+ GPPGTGK+ M A+A G
Sbjct: 189 AEIAEVVD----FLRSPERYRRAGAAIPRGVLMVGPPGTGKTLMARAVAGEAGVPFLSVT 244
Query: 265 ----LELTAVKDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDK 318
+E+ + +R L E + I+ +++ID GQRR
Sbjct: 245 GSSFVEMFVGVGASRVRDLFEEARKHAPCIVFVDEIDA----IGQRRAGAGT-------- 292
Query: 319 DPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRM 378
+ +ERE TL+ LL +DG A G +++ TN E LDPAL+R GR
Sbjct: 293 ----IVANDEREQ-----TLNQLLAEMDGFEPAQG--VVVLAATNRPEVLDPALLRPGRF 341
Query: 379 DKHIEL 384
D+ + +
Sbjct: 342 DRQVTV 347
>sp|B2UE66|FTSH_RALPJ ATP-dependent zinc metalloprotease FtsH OS=Ralstonia pickettii
(strain 12J) GN=ftsH PE=3 SV=1
Length = 714
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 32/185 (17%)
Query: 208 EKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL-- 265
E KE + ++++F K Y R+G +G LL G PGTGK+ + A+A G + +
Sbjct: 247 EAKEELSEIVSFLKDPQRYQRLGGKIPKGVLLVGAPGTGKTLLAKAVAGEAGVPFFSMSG 306
Query: 266 ----ELTAVKDNTELRKLL--IETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKD 319
E+ +R L ET + II I+++D G +
Sbjct: 307 SDFVEMFVGVGAARVRDLFKQAETKAPCIIFIDELDAL-----------------GKTRA 349
Query: 320 PRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMD 379
G EERE TL+ LL +DG S G +I+ TN E LDPAL+R GR D
Sbjct: 350 LNAVGGNEEREQ-----TLNQLLVEMDGFDSNKG--VIIMAATNRPEILDPALLRPGRFD 402
Query: 380 KHIEL 384
+H+ L
Sbjct: 403 RHVAL 407
>sp|P94304|FTSH_BACPE ATP-dependent zinc metalloprotease FtsH OS=Bacillus pseudofirmus
(strain OF4) GN=ftsH PE=3 SV=2
Length = 679
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 37/214 (17%)
Query: 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMAN 256
A F+ +A EK+E+++ ++ F K ++ IG +G LL GPPGTGK+ + A+A
Sbjct: 163 AKFKDVAGADEEKQELVE-VVEFLKDPRKFSAIGARIPKGVLLVGPPGTGKTLLARAVAG 221
Query: 257 LLGYDLYDL------ELTAVKDNTELRKLL--IETSSKSIIVIEDIDCSLDLTGQRRKKK 308
G + + E+ + +R L + ++ II I++ID
Sbjct: 222 EAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAV----------- 270
Query: 309 EKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKL 368
G + G +ERE TL+ LL +DG + G +I+ TN + L
Sbjct: 271 ------GRQRGAGLGGGHDEREQ-----TLNQLLVEMDGFSANEG--IIIIAATNRADIL 317
Query: 369 DPALIRKGRMDKHIELSHCSY----EAFKVLAKN 398
DPAL+R GR D+ I+++ E KV A+N
Sbjct: 318 DPALLRPGRFDRQIQVNRPDVNGREEVLKVHARN 351
>sp|O04019|PS6AB_ARATH 26S protease regulatory subunit 6A homolog B OS=Arabidopsis
thaliana GN=RPT5B PE=1 SV=3
Length = 423
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 34/191 (17%)
Query: 210 KEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTM---IAAMANLLGYDLYDLE 266
+E+++ ++ ++ + ++G +G LLYGPPGTGK+ M AA N L +
Sbjct: 180 QELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ 239
Query: 267 LTA--VKDNTELRK---LLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPR 321
L + D +L + LL + S II I++ID G +R E D
Sbjct: 240 LVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDA----IGTKRFDSEVSGD-------- 287
Query: 322 QKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERL-IVFTTNYIEKLDPALIRKGRMDK 380
RE Q T+ LLN +DG S +R+ ++ TN + LDPAL+R GR+D+
Sbjct: 288 -------REV---QRTMLELLNQLDGFSS---DDRIKVIAATNRADILDPALMRSGRLDR 334
Query: 381 HIELSHCSYEA 391
IE H + EA
Sbjct: 335 KIEFPHPTEEA 345
>sp|A6LD25|FTSH_PARD8 ATP-dependent zinc metalloprotease FtsH OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=ftsH PE=3 SV=1
Length = 684
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 33/188 (17%)
Query: 207 AEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL- 265
AE K+ ++++++F K+ + Y +G +G LL GPPGTGK+ + A+A + L
Sbjct: 202 AEAKQEVEEIVSFLKNPEKYTELGGKIPKGALLVGPPGTGKTLLAKAVAGEANVPFFSLS 261
Query: 266 -----ELTAVKDNTELRKLLIETSSKS--IIVIEDIDCSLDLTGQRRKKKEKKEDEGNDK 318
E+ + +R L + KS I+ I++ID G+ R K N
Sbjct: 262 GSDFVEMFVGVGASRVRDLFRQAKEKSPCIVFIDEIDA----VGRARGKNANM----NSN 313
Query: 319 DPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRM 378
D R+ TL+ LL +DG S G +I+ TN + LD AL+R GR
Sbjct: 314 DEREN-------------TLNQLLTEMDGFGSNSG--VIILAATNRADILDKALLRAGRF 358
Query: 379 DK--HIEL 384
D+ H+EL
Sbjct: 359 DRQIHVEL 366
>sp|P54776|PRS6A_SOLLC 26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum
GN=TBP1 PE=2 SV=1
Length = 423
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 91/191 (47%), Gaps = 34/191 (17%)
Query: 210 KEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTM---IAAMANLLGYDLYDLE 266
+E+++ ++ ++ + ++G +G LLYGPPGTGK+ M AA N L +
Sbjct: 180 QELVEAIVLPMTHQERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ 239
Query: 267 LTA--VKDNTELRK---LLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPR 321
L + D +L + L + S II I++ID G +R E D
Sbjct: 240 LVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDA----IGTKRFDSEVSGD-------- 287
Query: 322 QKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERL-IVFTTNYIEKLDPALIRKGRMDK 380
RE Q T+ LLN +DG S +R+ ++ TN + LDPAL+R GR+D+
Sbjct: 288 -------REV---QRTMLELLNQLDGFSS---DDRIKVIAATNRADILDPALMRSGRLDR 334
Query: 381 HIELSHCSYEA 391
IE H + EA
Sbjct: 335 KIEFPHPTEEA 345
>sp|P47695|FTSH_MYCGE ATP-dependent zinc metalloprotease FtsH OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=ftsH PE=3
SV=1
Length = 702
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 36/233 (15%)
Query: 199 FQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL 258
F +A EK E+++ ++ + K+ YA++G RG +LYGPPGTGK+ + A+A
Sbjct: 230 FTNIAGLQEEKHELLE-IVDYLKNPLKYAQMGARSPRGVILYGPPGTGKTLLAKAVAGEA 288
Query: 259 GYDLYDLELTAVKD------NTELRKLL--IETSSKSIIVIEDIDCSLDLTGQRRKKKEK 310
G + + +D +R L + ++ II I++ID G +R + E
Sbjct: 289 GVPFFQSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDS----VGSKRGRVEL 344
Query: 311 KEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDP 370
++ TL+ LL +DG S G +++ TN ++ LD
Sbjct: 345 SSYSVVEQ------------------TLNQLLAEMDGFTSRTG--VVVMAATNRLDVLDD 384
Query: 371 ALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLGEAKMTPA 423
AL+R GR D+HI+++ + + + K ++ E+ NL KI LL AK TP
Sbjct: 385 ALLRPGRFDRHIQINLPDIKEREGILK--VHAENKNLSSKI-SLLDVAKRTPG 434
>sp|Q9HGM3|YTA12_SCHPO Mitochondrial respiratory chain complexes assembly protein rca1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=yta12 PE=3 SV=1
Length = 773
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 208 EKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYD--- 264
E KE I + + F K+ FY R+G RG +L GPPGTGK+ + A A
Sbjct: 303 EAKEEIMEFVKFLKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSVSG 362
Query: 265 ---LELTAVKDNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKD 319
LE+ + +R L ++ II I++ID G+ R +
Sbjct: 363 SEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDA----IGKARGRGG---------- 408
Query: 320 PRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFT-TNYIEKLDPALIRKGRM 378
Q +ERE+ TL+ LL +DG S+ E ++VF TN + LDPAL+R GR
Sbjct: 409 --QFGSNDERES-----TLNQLLVEMDGFTSS---EHIVVFAGTNRPDVLDPALLRPGRF 458
Query: 379 DKHIEL 384
D+ I +
Sbjct: 459 DRQITI 464
>sp|P48601|PRS4_DROME 26S protease regulatory subunit 4 OS=Drosophila melanogaster
GN=Pros26.4 PE=2 SV=2
Length = 439
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 38/171 (22%)
Query: 224 DFYARIGRAWKRGYLLYGPPGTGKSTMIAAMAN--------LLGYDLYDLELTAVKDNTE 275
++Y +G +G +LYGPPGTGK+ + A+AN ++G +L L D +
Sbjct: 208 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG---DGPK 264
Query: 276 LRKLLI---ETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETN 332
L + L E + SI+ I++ID G +R + G ERE
Sbjct: 265 LVRELFRVAEEHAPSIVFIDEIDA----VGTKRYDS----NSGG-----------EREI- 304
Query: 333 NSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIE 383
Q T+ LLN +DG S G+ ++ TN IE LDPALIR GR+D+ IE
Sbjct: 305 --QRTMLELLNQLDGFDSR--GDVKVIMATNRIETLDPALIRPGRIDRKIE 351
>sp|P62193|PRS4_RAT 26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1
PE=2 SV=1
Length = 440
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 38/171 (22%)
Query: 224 DFYARIGRAWKRGYLLYGPPGTGKSTMIAAMAN--------LLGYDLYDLELTAVKDNTE 275
++Y +G +G +LYGPPGTGK+ + A+AN ++G +L L D +
Sbjct: 209 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG---DGPK 265
Query: 276 LRKLLI---ETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETN 332
L + L E + SI+ I++ID G +R + G ERE
Sbjct: 266 LVRELFRVAEEHAPSIVFIDEIDA----IGTKRYDS----NSGG-----------EREI- 305
Query: 333 NSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIE 383
Q T+ LLN +DG S G+ ++ TN IE LDPALIR GR+D+ IE
Sbjct: 306 --QRTMLELLNQLDGFDSR--GDVKVIMATNRIETLDPALIRPGRIDRKIE 352
>sp|P62192|PRS4_MOUSE 26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1
SV=1
Length = 440
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 38/171 (22%)
Query: 224 DFYARIGRAWKRGYLLYGPPGTGKSTMIAAMAN--------LLGYDLYDLELTAVKDNTE 275
++Y +G +G +LYGPPGTGK+ + A+AN ++G +L L D +
Sbjct: 209 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG---DGPK 265
Query: 276 LRKLLI---ETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETN 332
L + L E + SI+ I++ID G +R + G ERE
Sbjct: 266 LVRELFRVAEEHAPSIVFIDEIDA----IGTKRYDS----NSGG-----------EREI- 305
Query: 333 NSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIE 383
Q T+ LLN +DG S G+ ++ TN IE LDPALIR GR+D+ IE
Sbjct: 306 --QRTMLELLNQLDGFDSR--GDVKVIMATNRIETLDPALIRPGRIDRKIE 352
>sp|P62191|PRS4_HUMAN 26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1
SV=1
Length = 440
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 38/171 (22%)
Query: 224 DFYARIGRAWKRGYLLYGPPGTGKSTMIAAMAN--------LLGYDLYDLELTAVKDNTE 275
++Y +G +G +LYGPPGTGK+ + A+AN ++G +L L D +
Sbjct: 209 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG---DGPK 265
Query: 276 LRKLLI---ETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETN 332
L + L E + SI+ I++ID G +R + G ERE
Sbjct: 266 LVRELFRVAEEHAPSIVFIDEIDA----IGTKRYDS----NSGG-----------EREI- 305
Query: 333 NSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIE 383
Q T+ LLN +DG S G+ ++ TN IE LDPALIR GR+D+ IE
Sbjct: 306 --QRTMLELLNQLDGFDSR--GDVKVIMATNRIETLDPALIRPGRIDRKIE 352
>sp|O23894|PRS6A_BRACM 26S protease regulatory subunit 6A homolog OS=Brassica campestris
GN=TBP1 PE=2 SV=1
Length = 424
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 91/191 (47%), Gaps = 34/191 (17%)
Query: 210 KEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTM---IAAMANLLGYDLYDLE 266
+E+++ ++ ++ + ++G +G LLYGPPGTGK+ M AA N L +
Sbjct: 181 QELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ 240
Query: 267 LTA--VKDNTELRK---LLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPR 321
L + D +L + L + + II I++ID G +R E D
Sbjct: 241 LVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDA----IGTKRFDSEVSGD-------- 288
Query: 322 QKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERL-IVFTTNYIEKLDPALIRKGRMDK 380
RE Q T+ LLN +DG S ER+ ++ TN + LDPAL+R GR+D+
Sbjct: 289 -------REV---QRTMLELLNQLDGFSS---DERIKVIAATNRADILDPALMRSGRLDR 335
Query: 381 HIELSHCSYEA 391
IE H + EA
Sbjct: 336 KIEFPHPTEEA 346
>sp|Q90732|PRS4_CHICK 26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2
SV=1
Length = 440
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 38/171 (22%)
Query: 224 DFYARIGRAWKRGYLLYGPPGTGKSTMIAAMAN--------LLGYDLYDLELTAVKDNTE 275
++Y +G +G +LYGPPGTGK+ + A+AN ++G +L L D +
Sbjct: 209 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG---DGPK 265
Query: 276 LRKLLI---ETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETN 332
L + L E SI+ I++ID G +R + G ERE
Sbjct: 266 LVRELFRVAEEHGPSIVFIDEIDA----IGTKRYDS----NSGG-----------EREI- 305
Query: 333 NSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIE 383
Q T+ LLN +DG S G+ ++ TN IE LDPALIR GR+D+ IE
Sbjct: 306 --QRTMLELLNQLDGFDSR--GDVKVIMATNRIETLDPALIRPGRIDRKIE 352
>sp|Q9SEI2|PS6AA_ARATH 26S protease regulatory subunit 6A homolog A OS=Arabidopsis
thaliana GN=RPT5A PE=2 SV=1
Length = 424
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 91/191 (47%), Gaps = 34/191 (17%)
Query: 210 KEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTM---IAAMANLLGYDLYDLE 266
+E+++ ++ ++ + ++G +G LLYGPPGTGK+ M AA N L +
Sbjct: 181 QELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ 240
Query: 267 LTA--VKDNTELRK---LLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPR 321
L + D +L + L + + II I++ID G +R E D
Sbjct: 241 LVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDA----IGTKRFDSEVSGD-------- 288
Query: 322 QKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERL-IVFTTNYIEKLDPALIRKGRMDK 380
RE Q T+ LLN +DG S ER+ ++ TN + LDPAL+R GR+D+
Sbjct: 289 -------REV---QRTMLELLNQLDGFSS---DERIKVIAATNRADILDPALMRSGRLDR 335
Query: 381 HIELSHCSYEA 391
IE H + EA
Sbjct: 336 KIEFPHPTEEA 346
>sp|O74445|PRS10_SCHPO Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpt4 PE=3 SV=2
Length = 388
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 32/172 (18%)
Query: 221 KSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDN--TELRK 278
K+ + + R+G +G LLYGPPGTGK+ + A+A LG + + +A+ D E +
Sbjct: 153 KNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESAR 212
Query: 279 LLIET------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETN 332
++ E +I +++ID G RR EG D RE
Sbjct: 213 IIREMFGYAKEHEPCVIFMDEIDA----IGGRRFS------EGTSAD---------REI- 252
Query: 333 NSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIEL 384
Q TL LLN +DG G+ I+ TN + LDPAL+R GR+D+ IE+
Sbjct: 253 --QRTLMELLNQMDGFDYL--GQTKIIMATNRPDTLDPALLRPGRLDRKIEI 300
>sp|B8J992|FTSH_ANAD2 ATP-dependent zinc metalloprotease FtsH OS=Anaeromyxobacter
dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=ftsH PE=3
SV=1
Length = 706
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 92/202 (45%), Gaps = 33/202 (16%)
Query: 189 VHVVFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKS 248
+H+ + TFQ A E E + +++ F K+ + Y R+G +G LL GPPGTGK+
Sbjct: 195 IHMEPDTGVTFQDAAGI-DEAVEELQEIVEFLKTPEKYRRLGGRIPKGVLLVGPPGTGKT 253
Query: 249 TMIAAMANLLGYDLYDL------ELTAVKDNTELRKLLIETSSKS--IIVIEDIDCSLDL 300
+ A A G + L E+ +R L + + K+ I+ I+++D
Sbjct: 254 LLARATAGEAGVPFFSLSGSEFVEMFVGVGAARVRDLFAQATQKAPCIVFIDELDAL--- 310
Query: 301 TGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVF 360
G ++ G +ERE TL+ LL +DG + G +I+
Sbjct: 311 --------------GKSRNAGIMGGHDEREQ-----TLNQLLAEMDGFDARAG--LIIMG 349
Query: 361 TTNYIEKLDPALIRKGRMDKHI 382
TN E LDPAL+R GR D+ +
Sbjct: 350 ATNRPEILDPALLRPGRFDRQV 371
>sp|Q67T82|FTSH2_SYMTH ATP-dependent zinc metalloprotease FtsH 2 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH2 PE=3 SV=1
Length = 587
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 32/200 (16%)
Query: 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAA 253
E P TF +A K E+ ++++ + K+ D Y IG +G LLYGPPGTGK+ + A
Sbjct: 146 ESPVTFADVAGMDEVKGEL-EEIVDYLKNPDKYRAIGARIPKGVLLYGPPGTGKTLLARA 204
Query: 254 MANLLGYDLYDL------ELTAVKDNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRR 305
+A G + L EL + +R+L + ++ I+ I++ID G++R
Sbjct: 205 VAGEAGVPFFALSGSSFVELFVGMGASRVRELFAQARKNAPCIVFIDEIDA----VGRQR 260
Query: 306 KKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYI 365
G +ERE TL+ LL +DG + G +++ TN
Sbjct: 261 GSAAVVG------------GHDEREQ-----TLNQLLTEMDGFGAYEG--VIVMAATNRP 301
Query: 366 EKLDPALIRKGRMDKHIELS 385
+ LD AL+R GR D+ I +
Sbjct: 302 DVLDKALLRPGRFDRQIPVG 321
>sp|O59824|YME1_SCHPO ATP-dependent zinc metalloprotease YME1 homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC965.04c PE=3 SV=1
Length = 709
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 35/187 (18%)
Query: 208 EKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL-- 265
E KE +++++ F + + R+G RG LL GPPGTGK+ + A+A + +
Sbjct: 274 EAKEELEEIVDFLRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARAVAGEANVPFFFMSG 333
Query: 266 ----ELTAVKDNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKD 319
E+ +R+L + SII I+++D GQ+R
Sbjct: 334 SQFDEMYVGVGAKRVRELFAAARKQAPSIIFIDELDA----IGQKRNA------------ 377
Query: 320 PRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVF--TTNYIEKLDPALIRKGR 377
R+ + + TL+ LL +DG +VF TN+ E LDPAL R GR
Sbjct: 378 ---------RDAAHMRQTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGR 428
Query: 378 MDKHIEL 384
D+HI +
Sbjct: 429 FDRHIHV 435
>sp|P73437|FTSH4_SYNY3 ATP-dependent zinc metalloprotease FtsH 4 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=ftsH4 PE=2 SV=1
Length = 628
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 81/181 (44%), Gaps = 26/181 (14%)
Query: 208 EKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL-- 265
E K + +++ F K Y +G +G LL GPPGTGK+ + A A G + +
Sbjct: 181 EAKTELSEVVDFLKFPQRYTALGAKIPKGVLLVGPPGTGKTLLAKAAAGEAGVPFFIISG 240
Query: 266 ----ELTAVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPR 321
EL +R L E + K I ID LD G+ R GND
Sbjct: 241 SEFVELFVGAGAARVRDLF-EQAKKQAPCIVFID-ELDAIGKSRASGAFM--GGND---- 292
Query: 322 QKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKH 381
ERE TL+ LL +DG +SA G +++ TN E LDPAL+R GR D+
Sbjct: 293 ------EREQ-----TLNQLLTEMDG-FSAAGATVIVLAATNRPETLDPALLRPGRFDRQ 340
Query: 382 I 382
+
Sbjct: 341 V 341
>sp|P75120|FTSH_MYCPN ATP-dependent zinc metalloprotease FtsH OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=ftsH PE=3 SV=1
Length = 709
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 109/237 (45%), Gaps = 44/237 (18%)
Query: 199 FQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL 258
F +A EK E+++ ++ + K+ YA++G RG +LYGPPGTGK+ + A+A
Sbjct: 227 FDNIAGLQEEKHELLE-IVDYLKNPLKYAQMGARSPRGVILYGPPGTGKTLLAKAVAGEA 285
Query: 259 GYDLYDLELTAVKD------NTELRKLL--IETSSKSIIVIEDIDCSLDLTGQRRKKKEK 310
G + + +D +R L + ++ II I++ID G +R + E
Sbjct: 286 GVPFFQSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDS----VGSKRGRVEL 341
Query: 311 KEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDP 370
+ + TL+ LL +DG S G +++ TN ++ LD
Sbjct: 342 S------------------SYSVVEQTLNQLLAEMDGFTSRTG--VVVMAATNRLDVLDD 381
Query: 371 ALIRKGRMDKHIELSHCSYE----AFKVLAKNYLNIESHNLFDKIGELLGEAKMTPA 423
AL+R GR D+HI+++ + +V AKN NL KI LL AK TP
Sbjct: 382 ALLRPGRFDRHIQINLPDIKEREGILQVHAKN------KNLSSKI-SLLDVAKRTPG 431
>sp|D2QZ34|FTSH_PIRSD ATP-dependent zinc metalloprotease FtsH OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=ftsH PE=3
SV=1
Length = 700
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 37/220 (16%)
Query: 219 FSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL------ELTAVKD 272
F +S + Y ++G +G LL GPPGTGK+ + A+A G + L E+
Sbjct: 240 FLRSPEKYQKLGGRIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSDFVEMFVGVG 299
Query: 273 NTELRKLLIETSSKS--IIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERE 330
+R + + +K+ II I+++D G + G +ERE
Sbjct: 300 AARVRDMFQQAEAKAPCIIFIDELDAL-----------------GKSRGAGIMGGHDERE 342
Query: 331 TNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYE 390
TL+ LL +DG S G +++ TN E LDPAL+R GR D+H+ + +
Sbjct: 343 Q-----TLNALLVEMDGFGSNSG--VIVMAATNRPETLDPALLRPGRFDRHVLVDRPDIK 395
Query: 391 AFKVLAKNYLNIESHNL-FDKIGELLGEAKMTPADVAEHL 429
++ L + N+ D +L A +TP V L
Sbjct: 396 G----REDILKVHVKNVKLDPTVDLHKVAAITPGFVGADL 431
>sp|B9L3S8|FTSH2_THERP ATP-dependent zinc metalloprotease FtsH 2 OS=Thermomicrobium roseum
(strain ATCC 27502 / DSM 5159 / P-2) GN=ftsH2 PE=3 SV=1
Length = 699
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 90/198 (45%), Gaps = 34/198 (17%)
Query: 194 EHP-ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIA 252
E P TF +A E K E+ ++ F K+ Y RIG RG LL GPPGTGK+ +
Sbjct: 244 ERPQVTFADVAGEEEAKAELAQ-VVDFLKNPAKYHRIGARLPRGVLLVGPPGTGKTLLAR 302
Query: 253 AMANLLGYDLYD------LELTAVKDNTELRKLL--IETSSKSIIVIEDIDCSLDLTGQR 304
A+A G + +E+ + +R L + + SII I+++D
Sbjct: 303 AVAGEAGVPFFSVSASEFVEMFVGVGASRVRDLFERAKAQAPSIIFIDELDAV------- 355
Query: 305 RKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNY 364
G + +G +ERE TL+ LL +DG + + +++ TN
Sbjct: 356 ----------GRQRFAGLGVGNDEREQ-----TLNQLLVEMDGFEAHT--DVVVIAATNR 398
Query: 365 IEKLDPALIRKGRMDKHI 382
+ LDPAL+R GR D+ +
Sbjct: 399 PDVLDPALLRPGRFDRQV 416
>sp|Q67JH0|FTSH3_SYMTH ATP-dependent zinc metalloprotease FtsH 3 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH3 PE=3 SV=1
Length = 626
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 36/203 (17%)
Query: 208 EKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL-- 265
E KE + +++ F K Y +G +G LLYGPPGTGK+ + A+A G + +
Sbjct: 164 EVKEELAEIVDFLKHPKRYLELGARIPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSISG 223
Query: 266 ----ELTAVKDNTELRKLL--IETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKD 319
E+ + +R L + +S I+ I++ID G +
Sbjct: 224 SDFVEMFVGVGASRVRDLFEQAKKNSPCIVFIDEIDAV-----------------GRQRG 266
Query: 320 PRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMD 379
G +ERE TL+ LL +DG + G +I+ TN + LDPAL+R GR D
Sbjct: 267 AGYGGGHDEREQ-----TLNQLLVEMDGFSANEG--IIIIAATNRPDVLDPALLRPGRFD 319
Query: 380 KHIELSHCSYEA----FKVLAKN 398
+ I + + F+V AK
Sbjct: 320 RQIVIDRPDLKGRLAIFQVHAKG 342
>sp|A0L4S0|FTSH_MAGSM ATP-dependent zinc metalloprotease FtsH OS=Magnetococcus sp.
(strain MC-1) GN=ftsH PE=3 SV=1
Length = 673
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 43/217 (19%)
Query: 198 TFQTLA-MEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMA- 255
TFQ +A +E E KE + +++ F K + R+G +G LL GPPGTGK+ + A+A
Sbjct: 152 TFQDVAGIE--EAKEELQEVVQFLKDPHKFQRLGGKIPKGVLLVGPPGTGKTLLARAIAG 209
Query: 256 -------NLLGYDLYDLELTA----VKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQR 304
NL G D ++ + V+D E K ++ II I++ID G+
Sbjct: 210 EANVPFFNLSGSDFVEMFVGVGAARVRDMFEQGK----KNAPCIIFIDEIDA----VGRH 261
Query: 305 RKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNY 364
R G +ERE TL+ LL +DG S G ++V TN
Sbjct: 262 RGAGLGG-------------GHDEREQ-----TLNQLLVEMDGFESTEG--VIMVAATNR 301
Query: 365 IEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401
+ LDPAL+R GR D+ + + + + K ++N
Sbjct: 302 PDVLDPALLRPGRFDRQVTVPNPDILGRTQILKVHMN 338
>sp|Q8EUA6|FTSH_MYCPE ATP-dependent zinc metalloprotease FtsH OS=Mycoplasma penetrans
(strain HF-2) GN=ftsH PE=3 SV=1
Length = 822
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 32/177 (18%)
Query: 217 IAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKD---- 272
+ + K D YA +G +G +LYGPPGTGK+ + A+A + + +A +D
Sbjct: 323 VDYLKRPDRYAAMGARVPKGVILYGPPGTGKTLLAKAVAGEAKVPFFQVSGSAFEDMLVG 382
Query: 273 --NTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEE 328
+R L + S+ +II I++ID G +R K E D+
Sbjct: 383 VGAKRVRDLFNKAVKSAPAIIFIDEIDS----VGSKRGKFETTAGSLADQ---------- 428
Query: 329 RETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELS 385
TL+ LL +DG + G +++ TN ++ LD AL+R GR D+HI+++
Sbjct: 429 --------TLNQLLAEMDGFNTKTG--VIVMAATNRLDVLDDALLRPGRFDRHIQVN 475
>sp|B3R057|FTSH1_PHYMT ATP-dependent zinc metalloprotease FtsH 1 OS=Phytoplasma mali
(strain AT) GN=ftsH1 PE=3 SV=1
Length = 600
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 33/193 (17%)
Query: 198 TFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANL 257
TF+ +A EK+E+ +LI F K Y IG A +G LL GPPGTGK+ + A+A
Sbjct: 173 TFKDVAGNTEEKEEM-TELIDFLKQPQKYETIGAAIPKGVLLEGPPGTGKTLLAKALAGE 231
Query: 258 LGYDLYD------LELTAVKDNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKE 309
Y +E+ + +R L E ++ ++ I++ID L G+R
Sbjct: 232 ASVPFYAVSGSEFVEMYVGVGASRVRTLFKEAKLNAPCVLFIDEIDV---LGGKR----- 283
Query: 310 KKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLD 369
GN G +E++ TL+ LL +DG A G +++ TN + LD
Sbjct: 284 ----GGNSSG-----GNQEKDQ-----TLNQLLTEMDGFTQAKG--IIVIGATNRADMLD 327
Query: 370 PALIRKGRMDKHI 382
AL+R GR D+ I
Sbjct: 328 AALLRPGRFDRKI 340
>sp|P46469|FTSH_LACLA ATP-dependent zinc metalloprotease FtsH OS=Lactococcus lactis
subsp. lactis (strain IL1403) GN=ftsH PE=3 SV=1
Length = 695
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 39/224 (17%)
Query: 199 FQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL 258
F +A EK+E+++ ++ F K+ Y +G G LL GPPGTGK+ + A+A
Sbjct: 192 FADVAGSEEEKQELVE-VVDFLKNPKKYHDLGARIPAGVLLEGPPGTGKTLLAKAVAGEA 250
Query: 259 GYDLYDL------ELTAVKDNTELRKLL--IETSSKSIIVIEDIDCSLDLTGQRRKKKEK 310
G Y + E+ + +R L + ++ SII I++ID G++R
Sbjct: 251 GVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTAPSIIFIDEIDA----VGRQRGAGLG 306
Query: 311 KEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDP 370
G +ERE TL+ LL +DG + G +++ TN + LDP
Sbjct: 307 G-------------GNDEREQ-----TLNQLLVEMDG-FQDDGNSVIVIAATNRSDVLDP 347
Query: 371 ALIRKGRMDKHIELSHCSYEA----FKVLAKN---YLNIESHNL 407
AL+R GR D+ + + + KV AKN +++ HN+
Sbjct: 348 ALLRPGRFDRKVLVGAPDVKGREAVLKVHAKNKPLASDVDLHNV 391
>sp|O17071|PRS10_CAEEL Probable 26S protease regulatory subunit 10B OS=Caenorhabditis
elegans GN=rpt-4 PE=1 SV=2
Length = 406
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 224 DFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDN--TELRKLLI 281
+ + R+G +G LL+GPPGTGK+ + A+A+ L + + +A+ D E +++
Sbjct: 174 ELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIR 233
Query: 282 ET-----SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQV 336
E + IV D +D G RR EG D RE Q
Sbjct: 234 EMFNYARDHQPCIVFMD---EIDAIGGRRFS------EGTSAD---------REI---QR 272
Query: 337 TLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELS 385
TL LLN +DG S G+ ++ TN + LDPAL+R GR+D+ IE+
Sbjct: 273 TLMELLNQLDGFDSL--GKVKVIMATNRPDTLDPALLRPGRLDRKIEIG 319
>sp|O32617|FTSH_HELFC ATP-dependent zinc metalloprotease FtsH OS=Helicobacter felis
(strain ATCC 49179 / NCTC 12436 / CS1) GN=ftsH PE=3 SV=1
Length = 638
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 30/183 (16%)
Query: 208 EKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL-- 265
E KE + +++ F K D YA +G +G LL GPPGTGK+ + A+A + +
Sbjct: 183 EAKEEVVEIVDFLKYPDRYASLGAKIPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSMGG 242
Query: 266 ----ELTAVKDNTELRKL--LIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKD 319
E+ + +R L + + + SII I++ID G+ R GND
Sbjct: 243 SSFIEMFVGLGASRVRDLFDIAKKEAPSIIFIDEIDA----IGKSRAAGGMI--SGND-- 294
Query: 320 PRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMD 379
ERE TL+ LL +DG S +++ TN E LDPAL+R GR D
Sbjct: 295 --------EREQ-----TLNQLLAEMDGFGSE-NAPVIVLAATNRPEILDPALLRPGRFD 340
Query: 380 KHI 382
+ +
Sbjct: 341 RQV 343
>sp|O19922|FTSH_CYACA ATP-dependent zinc metalloprotease FtsH OS=Cyanidium caldarium
GN=ftsH PE=3 SV=1
Length = 614
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 39/203 (19%)
Query: 191 VVFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTM 250
+VFE A + E KE + +++AF K + +G +G LL GPPGTGK+ +
Sbjct: 168 IVFEDVAGIE-------EAKEELQEIVAFLKDSRKFTNVGATIPKGVLLVGPPGTGKTLL 220
Query: 251 IAAMANLLGYDLYDL------ELTAVKDNTELRKLLIETSSKS--IIVIEDIDCSLDLTG 302
A+A + + E+ + +R L + K+ I+ I++ID
Sbjct: 221 AKAIAGEASAPFFSISGSEFVEMFVGVGASRVRDLFKKAKEKAPCIVFIDEIDAV----- 275
Query: 303 QRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTT 362
G + G +ERE TL+ LL +DG G ++V T
Sbjct: 276 ------------GRQRGVGIGGGNDEREQ-----TLNQLLTEMDGFSGDTG--VIVVAAT 316
Query: 363 NYIEKLDPALIRKGRMDKHIELS 385
N I+ LD AL+R GR D+ I +S
Sbjct: 317 NRIDVLDSALLRPGRFDRQIMVS 339
>sp|Q9ZM66|FTSH_HELPJ ATP-dependent zinc metalloprotease FtsH OS=Helicobacter pylori
(strain J99) GN=ftsH PE=3 SV=1
Length = 632
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 120/269 (44%), Gaps = 45/269 (16%)
Query: 132 FSFYPATDEKRYYKLTFHKRH--RDLI--LGPYLVSVLKEGREIKVRNRMRKLYTNN--- 184
+ P DEK+ F + + D++ L P LV + G + + NRM+K
Sbjct: 96 LTLVPLLDEKKINYSGFSESNFFTDMLGWLMPILVIL---GLWMFMANRMQKNMGGGIFG 152
Query: 185 -GSNWVHVVFEHP-ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGP 242
GS + E P F +A K+E+++ ++ F K + YA +G +G LL GP
Sbjct: 153 MGSAKKLINAEKPNVRFNDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGP 211
Query: 243 PGTGKSTMIAAMANLLGYDLYDL------ELTAVKDNTELRKLLIETSSK---SIIVIED 293
PGTGK+ + A+A + + E+ + +R L ET+ K SII I++
Sbjct: 212 PGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLF-ETAKKQAPSIIFIDE 270
Query: 294 IDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACG 353
ID G+ R GND ERE TL+ LL +DG S
Sbjct: 271 IDA----IGKSRAAGGMI--SGND----------EREQ-----TLNQLLAEMDGFGSE-N 308
Query: 354 GERLIVFTTNYIEKLDPALIRKGRMDKHI 382
+++ TN E LDPAL+R GR D+ +
Sbjct: 309 APVIVLAATNRPEILDPALMRPGRFDRQV 337
>sp|P71408|FTSH_HELPY ATP-dependent zinc metalloprotease FtsH OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=ftsH PE=1 SV=2
Length = 632
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 120/269 (44%), Gaps = 45/269 (16%)
Query: 132 FSFYPATDEKRYYKLTFHKRH--RDLI--LGPYLVSVLKEGREIKVRNRMRKLYTNN--- 184
+ P DEK+ F + + D++ L P LV + G + + NRM+K
Sbjct: 96 LTLVPLLDEKKINYSGFSESNFFTDMLGWLMPILVIL---GLWMFMANRMQKNMGGGIFG 152
Query: 185 -GSNWVHVVFEHP-ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGP 242
GS + E P F +A K+E+++ ++ F K + YA +G +G LL GP
Sbjct: 153 MGSAKKLINAEKPNVRFNDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGP 211
Query: 243 PGTGKSTMIAAMANLLGYDLYDL------ELTAVKDNTELRKLLIETSSK---SIIVIED 293
PGTGK+ + A+A + + E+ + +R L ET+ K SII I++
Sbjct: 212 PGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLF-ETAKKQAPSIIFIDE 270
Query: 294 IDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACG 353
ID G+ R GND ERE TL+ LL +DG S
Sbjct: 271 IDA----IGKSRAAGGVV--SGND----------EREQ-----TLNQLLAEMDGFGSE-N 308
Query: 354 GERLIVFTTNYIEKLDPALIRKGRMDKHI 382
+++ TN E LDPAL+R GR D+ +
Sbjct: 309 APVIVLAATNRPEILDPALMRPGRFDRQV 337
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,054,210
Number of Sequences: 539616
Number of extensions: 7985994
Number of successful extensions: 45877
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 281
Number of HSP's that attempted gapping in prelim test: 43582
Number of HSP's gapped (non-prelim): 2069
length of query: 482
length of database: 191,569,459
effective HSP length: 121
effective length of query: 361
effective length of database: 126,275,923
effective search space: 45585608203
effective search space used: 45585608203
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)