Query 011573
Match_columns 482
No_of_seqs 417 out of 3065
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 02:52:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 1E-99 2E-104 764.7 36.8 432 4-460 1-442 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 7.2E-44 1.6E-48 349.2 18.0 239 194-456 145-396 (406)
3 KOG0730 AAA+-type ATPase [Post 100.0 1E-39 2.2E-44 340.7 16.1 237 193-456 427-678 (693)
4 KOG0734 AAA+-type ATPase conta 100.0 5.9E-39 1.3E-43 326.1 13.7 207 197-431 301-516 (752)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 2.8E-37 6.1E-42 318.3 17.6 225 192-447 181-417 (802)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 5.7E-36 1.2E-40 308.7 20.1 213 192-431 503-728 (802)
7 KOG0731 AAA+-type ATPase conta 100.0 9.9E-36 2.1E-40 319.5 20.0 233 195-451 306-552 (774)
8 KOG0726 26S proteasome regulat 100.0 1E-35 2.2E-40 283.7 10.0 213 195-431 180-401 (440)
9 PTZ00454 26S protease regulato 100.0 7.8E-34 1.7E-38 293.5 19.4 238 194-455 139-389 (398)
10 KOG0727 26S proteasome regulat 100.0 4.2E-34 9.1E-39 268.0 15.0 213 195-431 150-371 (408)
11 KOG0736 Peroxisome assembly fa 100.0 8.7E-34 1.9E-38 298.9 19.2 212 194-430 666-889 (953)
12 KOG0728 26S proteasome regulat 100.0 3.5E-34 7.5E-39 268.3 13.7 213 195-431 142-363 (404)
13 KOG0652 26S proteasome regulat 100.0 1.2E-33 2.7E-38 266.0 16.1 239 193-455 164-415 (424)
14 KOG0738 AAA+-type ATPase [Post 100.0 4.2E-33 9.2E-38 275.0 13.7 210 194-431 205-427 (491)
15 COG0465 HflB ATP-dependent Zn 100.0 6.6E-33 1.4E-37 293.3 14.8 232 195-451 145-396 (596)
16 PRK03992 proteasome-activating 100.0 3.7E-32 8E-37 281.8 19.1 243 193-459 124-379 (389)
17 KOG0729 26S proteasome regulat 100.0 2E-32 4.4E-37 258.4 15.0 238 192-455 169-421 (435)
18 COG1223 Predicted ATPase (AAA+ 100.0 1.5E-32 3.2E-37 258.7 13.3 205 195-431 116-329 (368)
19 CHL00195 ycf46 Ycf46; Provisio 100.0 3E-32 6.4E-37 287.5 15.8 231 196-457 224-468 (489)
20 TIGR01241 FtsH_fam ATP-depende 100.0 8.1E-32 1.8E-36 288.0 19.1 235 194-453 49-296 (495)
21 TIGR03689 pup_AAA proteasome A 100.0 1.3E-31 2.7E-36 282.5 18.6 207 195-431 177-405 (512)
22 PTZ00361 26 proteosome regulat 100.0 6.6E-32 1.4E-36 281.0 16.0 239 193-455 176-427 (438)
23 TIGR01243 CDC48 AAA family ATP 100.0 1.3E-31 2.8E-36 298.8 17.2 210 196-431 449-667 (733)
24 CHL00176 ftsH cell division pr 100.0 1.2E-30 2.6E-35 283.3 20.0 233 195-452 178-423 (638)
25 KOG0735 AAA+-type ATPase [Post 100.0 1.1E-30 2.3E-35 273.3 18.7 215 189-430 654-879 (952)
26 KOG0739 AAA+-type ATPase [Post 100.0 1.9E-31 4.1E-36 255.3 10.4 203 195-426 128-340 (439)
27 COG0464 SpoVK ATPases of the A 100.0 3.9E-30 8.4E-35 275.4 18.7 232 195-453 237-484 (494)
28 KOG0651 26S proteasome regulat 100.0 2.2E-30 4.8E-35 249.5 12.9 231 197-453 129-374 (388)
29 TIGR01242 26Sp45 26S proteasom 100.0 5.3E-29 1.2E-33 256.6 17.8 235 193-451 115-362 (364)
30 KOG0737 AAA+-type ATPase [Post 100.0 2.3E-29 4.9E-34 248.7 14.2 208 197-431 89-306 (386)
31 PLN00020 ribulose bisphosphate 100.0 7.1E-29 1.5E-33 247.5 17.4 166 225-417 139-327 (413)
32 CHL00206 ycf2 Ycf2; Provisiona 100.0 3.1E-29 6.7E-34 285.8 15.8 202 222-454 1618-1879(2281)
33 PRK10733 hflB ATP-dependent me 100.0 1.1E-28 2.5E-33 270.3 17.9 233 195-452 147-392 (644)
34 KOG0730 AAA+-type ATPase [Post 99.9 2E-26 4.4E-31 241.4 16.8 233 195-458 180-422 (693)
35 KOG0732 AAA+-type ATPase conta 99.9 1.9E-26 4.2E-31 253.9 16.5 210 195-431 260-484 (1080)
36 TIGR01243 CDC48 AAA family ATP 99.9 5.1E-26 1.1E-30 253.9 18.5 209 195-430 173-390 (733)
37 KOG0741 AAA+-type ATPase [Post 99.9 3.2E-26 6.9E-31 233.4 10.7 242 195-464 214-502 (744)
38 KOG0740 AAA+-type ATPase [Post 99.9 3.6E-25 7.7E-30 226.1 14.0 211 195-433 148-368 (428)
39 KOG0742 AAA+-type ATPase [Post 99.9 1.2E-21 2.6E-26 194.9 14.6 213 154-401 302-529 (630)
40 PF00004 AAA: ATPase family as 99.8 1.3E-20 2.7E-25 165.0 10.5 123 237-386 1-132 (132)
41 PF14363 AAA_assoc: Domain ass 99.8 2.9E-20 6.4E-25 155.3 10.2 96 27-125 1-97 (98)
42 KOG0744 AAA+-type ATPase [Post 99.8 1.7E-19 3.8E-24 175.2 11.3 179 198-401 140-341 (423)
43 PF05496 RuvB_N: Holliday junc 99.8 1E-17 2.2E-22 158.0 16.9 184 194-423 18-216 (233)
44 TIGR02881 spore_V_K stage V sp 99.8 5.4E-17 1.2E-21 159.9 21.1 170 199-404 5-195 (261)
45 PRK00080 ruvB Holliday junctio 99.7 2.5E-17 5.5E-22 167.5 16.8 189 195-429 20-223 (328)
46 CHL00181 cbbX CbbX; Provisiona 99.7 3.5E-17 7.6E-22 163.1 17.4 170 200-404 23-213 (287)
47 TIGR02880 cbbX_cfxQ probable R 99.7 5.2E-17 1.1E-21 161.8 15.1 169 201-404 23-212 (284)
48 PF05673 DUF815: Protein of un 99.7 1.4E-16 3.1E-21 152.1 16.9 176 186-407 13-214 (249)
49 TIGR00635 ruvB Holliday juncti 99.7 9.2E-17 2E-21 161.6 15.8 183 198-426 2-199 (305)
50 TIGR00763 lon ATP-dependent pr 99.7 5.7E-16 1.2E-20 174.0 19.7 159 201-401 321-506 (775)
51 COG0466 Lon ATP-dependent Lon 99.7 8.4E-16 1.8E-20 163.4 15.2 158 202-401 325-509 (782)
52 PRK04195 replication factor C 99.7 2.9E-15 6.2E-20 160.1 18.0 163 192-404 6-177 (482)
53 KOG2004 Mitochondrial ATP-depe 99.7 2.8E-15 6E-20 158.7 17.2 177 201-426 412-612 (906)
54 PRK14962 DNA polymerase III su 99.6 2.4E-15 5.2E-20 159.1 16.2 153 194-401 8-190 (472)
55 PRK14956 DNA polymerase III su 99.6 2.6E-15 5.6E-20 157.1 16.1 156 193-403 11-196 (484)
56 PRK14960 DNA polymerase III su 99.6 3.2E-15 6.8E-20 160.5 16.3 180 194-428 9-219 (702)
57 PRK12323 DNA polymerase III su 99.6 1.7E-15 3.8E-20 162.1 14.1 156 194-404 10-200 (700)
58 PRK07003 DNA polymerase III su 99.6 4.6E-15 9.9E-20 160.8 16.6 156 194-404 10-195 (830)
59 COG2256 MGS1 ATPase related to 99.6 1.8E-15 3.9E-20 151.9 12.1 151 195-401 19-177 (436)
60 PRK14961 DNA polymerase III su 99.6 1.1E-14 2.4E-19 150.2 17.5 180 195-429 11-221 (363)
61 PRK06645 DNA polymerase III su 99.6 2.3E-14 5.1E-19 152.4 17.6 157 193-404 14-204 (507)
62 PRK14958 DNA polymerase III su 99.6 1.5E-14 3.2E-19 154.6 15.8 156 194-404 10-195 (509)
63 PRK05563 DNA polymerase III su 99.6 2.8E-14 6.1E-19 154.4 17.3 180 195-429 11-221 (559)
64 PRK14964 DNA polymerase III su 99.6 2.1E-14 4.6E-19 151.6 15.8 179 194-427 7-216 (491)
65 PHA02544 44 clamp loader, smal 99.6 2.7E-14 5.9E-19 144.3 15.8 157 187-400 10-173 (316)
66 COG2255 RuvB Holliday junction 99.6 1.6E-14 3.5E-19 139.0 13.3 166 194-405 20-199 (332)
67 TIGR02639 ClpA ATP-dependent C 99.6 6.3E-15 1.4E-19 164.8 12.0 158 195-401 177-359 (731)
68 PRK13342 recombination factor 99.6 3.2E-14 7E-19 149.2 16.3 153 194-402 6-166 (413)
69 PLN03025 replication factor C 99.6 3.8E-14 8.2E-19 143.7 16.2 157 192-404 5-175 (319)
70 TIGR02397 dnaX_nterm DNA polym 99.6 5.1E-14 1.1E-18 144.5 17.0 180 194-428 8-218 (355)
71 KOG0736 Peroxisome assembly fa 99.6 2.4E-14 5.3E-19 152.7 14.8 187 215-430 412-607 (953)
72 COG2607 Predicted ATPase (AAA+ 99.6 6.2E-14 1.3E-18 132.0 15.7 176 186-405 46-244 (287)
73 TIGR02640 gas_vesic_GvpN gas v 99.6 3.8E-14 8.3E-19 139.7 15.1 145 207-401 5-199 (262)
74 PRK08691 DNA polymerase III su 99.6 3.6E-14 7.7E-19 153.7 15.7 180 194-428 10-220 (709)
75 PRK07994 DNA polymerase III su 99.6 5.9E-14 1.3E-18 152.4 17.4 154 195-403 11-194 (647)
76 PRK14963 DNA polymerase III su 99.6 8.4E-14 1.8E-18 148.6 18.1 156 194-404 8-192 (504)
77 PRK05896 DNA polymerase III su 99.6 5.6E-14 1.2E-18 150.7 16.6 156 193-403 9-194 (605)
78 PRK07940 DNA polymerase III su 99.6 1.3E-13 2.9E-18 142.8 18.7 155 198-398 3-187 (394)
79 KOG0735 AAA+-type ATPase [Post 99.6 4.1E-14 8.8E-19 149.7 14.8 193 200-426 408-614 (952)
80 PRK14949 DNA polymerase III su 99.6 8.9E-14 1.9E-18 153.5 17.8 155 194-403 10-194 (944)
81 PRK14951 DNA polymerase III su 99.6 4.9E-14 1.1E-18 152.7 15.4 180 194-428 10-225 (618)
82 PRK07133 DNA polymerase III su 99.6 8.2E-14 1.8E-18 152.2 17.0 156 193-403 11-193 (725)
83 PRK14969 DNA polymerase III su 99.5 6.2E-14 1.4E-18 150.7 15.6 155 195-404 11-195 (527)
84 PRK14970 DNA polymerase III su 99.5 1.9E-13 4E-18 141.3 18.2 155 194-403 11-183 (367)
85 KOG0989 Replication factor C, 99.5 2.1E-14 4.5E-19 139.6 10.1 155 192-402 28-203 (346)
86 PRK07764 DNA polymerase III su 99.5 1.1E-13 2.3E-18 154.8 16.9 156 193-403 8-195 (824)
87 PRK14957 DNA polymerase III su 99.5 1.6E-13 3.5E-18 146.9 17.6 155 195-404 11-195 (546)
88 PRK14952 DNA polymerase III su 99.5 1.7E-13 3.8E-18 147.9 17.5 157 194-405 7-195 (584)
89 PRK10787 DNA-binding ATP-depen 99.5 9.1E-14 2E-18 155.3 15.3 157 202-401 324-507 (784)
90 PRK14959 DNA polymerase III su 99.5 1.7E-13 3.6E-18 147.8 15.9 157 193-404 9-195 (624)
91 TIGR03345 VI_ClpV1 type VI sec 99.5 2.9E-14 6.2E-19 160.9 10.5 157 195-401 182-364 (852)
92 TIGR02902 spore_lonB ATP-depen 99.5 1.1E-13 2.5E-18 149.0 14.7 162 193-406 58-282 (531)
93 PRK14965 DNA polymerase III su 99.5 1.7E-13 3.6E-18 149.0 15.7 154 195-403 11-194 (576)
94 PRK14953 DNA polymerase III su 99.5 2.9E-13 6.3E-18 144.0 17.1 180 194-428 10-220 (486)
95 PRK10865 protein disaggregatio 99.5 8.8E-14 1.9E-18 157.4 13.9 156 195-401 173-355 (857)
96 PRK05342 clpX ATP-dependent pr 99.5 4.1E-13 8.9E-18 139.8 16.2 177 199-399 69-324 (412)
97 PRK06305 DNA polymerase III su 99.5 6.4E-13 1.4E-17 140.4 17.3 154 194-402 11-195 (451)
98 PRK06647 DNA polymerase III su 99.5 4.7E-13 1E-17 144.5 16.4 180 194-428 10-220 (563)
99 PRK14955 DNA polymerase III su 99.5 4E-13 8.6E-18 140.2 15.3 178 194-426 10-226 (397)
100 PRK09111 DNA polymerase III su 99.5 5.7E-13 1.2E-17 144.6 17.0 158 193-405 17-209 (598)
101 PRK06893 DNA replication initi 99.5 5.7E-13 1.2E-17 128.8 15.0 161 192-401 8-175 (229)
102 PRK08451 DNA polymerase III su 99.5 1E-12 2.3E-17 140.1 18.3 181 194-429 8-219 (535)
103 PRK14954 DNA polymerase III su 99.5 1.2E-12 2.7E-17 142.3 18.1 154 195-403 11-202 (620)
104 PRK12402 replication factor C 99.5 1.1E-12 2.4E-17 133.5 16.7 157 192-404 7-201 (337)
105 TIGR03346 chaperone_ClpB ATP-d 99.5 2.2E-13 4.7E-18 154.6 12.5 157 195-401 168-350 (852)
106 PRK14948 DNA polymerase III su 99.5 9.1E-13 2E-17 143.8 16.9 155 193-402 9-195 (620)
107 TIGR03420 DnaA_homol_Hda DnaA 99.5 5.4E-13 1.2E-17 128.1 13.2 157 193-401 8-173 (226)
108 PRK11034 clpA ATP-dependent Cl 99.5 2.7E-13 5.8E-18 150.6 12.1 154 199-401 185-363 (758)
109 PRK14971 DNA polymerase III su 99.5 1.5E-12 3.2E-17 142.2 17.5 178 194-426 11-220 (614)
110 PRK11034 clpA ATP-dependent Cl 99.4 1.2E-12 2.5E-17 145.5 15.9 159 201-401 459-667 (758)
111 PRK13341 recombination factor 99.4 6.9E-13 1.5E-17 146.7 13.5 152 194-401 22-182 (725)
112 PRK14950 DNA polymerase III su 99.4 2.2E-12 4.8E-17 140.8 17.2 156 194-404 10-196 (585)
113 TIGR00382 clpX endopeptidase C 99.4 1.3E-12 2.9E-17 135.4 14.6 178 199-400 75-331 (413)
114 TIGR01650 PD_CobS cobaltochela 99.4 1.1E-12 2.4E-17 131.4 12.9 129 234-400 64-233 (327)
115 PRK08903 DnaA regulatory inact 99.4 1.7E-12 3.7E-17 125.1 13.2 153 192-400 10-170 (227)
116 TIGR02928 orc1/cdc6 family rep 99.4 6.4E-12 1.4E-16 129.5 18.1 157 200-401 15-213 (365)
117 CHL00095 clpC Clp protease ATP 99.4 8.6E-13 1.9E-17 149.3 12.1 152 198-400 177-354 (821)
118 PRK00149 dnaA chromosomal repl 99.4 1.5E-12 3.3E-17 138.1 13.0 193 192-430 114-324 (450)
119 PRK00440 rfc replication facto 99.4 9.3E-12 2E-16 125.6 17.3 161 187-405 6-179 (319)
120 COG0464 SpoVK ATPases of the A 99.4 4.1E-12 8.9E-17 136.4 15.2 205 221-454 5-228 (494)
121 TIGR00362 DnaA chromosomal rep 99.4 2.9E-12 6.4E-17 134.1 13.1 191 193-430 103-312 (405)
122 PHA02244 ATPase-like protein 99.4 6E-12 1.3E-16 127.5 14.7 140 205-396 101-269 (383)
123 KOG2028 ATPase related to the 99.4 2.8E-12 6.1E-17 127.0 11.6 151 194-399 132-293 (554)
124 PF07728 AAA_5: AAA domain (dy 99.4 5.3E-13 1.2E-17 118.5 5.8 105 236-378 1-139 (139)
125 PRK08084 DNA replication initi 99.4 7.6E-12 1.6E-16 121.4 14.2 158 193-400 15-180 (235)
126 cd00009 AAA The AAA+ (ATPases 99.4 7.7E-12 1.7E-16 109.8 12.7 116 233-386 18-151 (151)
127 PRK08727 hypothetical protein; 99.4 1.4E-11 3.1E-16 119.3 15.2 157 192-400 11-175 (233)
128 COG0714 MoxR-like ATPases [Gen 99.4 2.8E-11 6E-16 123.4 18.1 130 234-401 43-204 (329)
129 COG2812 DnaX DNA polymerase II 99.4 6.8E-12 1.5E-16 132.5 13.9 156 195-405 11-196 (515)
130 PRK07471 DNA polymerase III su 99.4 4.1E-11 8.9E-16 123.3 19.4 153 194-401 13-214 (365)
131 TIGR02639 ClpA ATP-dependent C 99.3 1.1E-11 2.5E-16 138.7 14.6 156 200-402 454-664 (731)
132 PRK05564 DNA polymerase III su 99.3 6E-11 1.3E-15 120.1 18.6 148 198-400 2-165 (313)
133 TIGR02903 spore_lon_C ATP-depe 99.3 3.4E-11 7.4E-16 131.9 16.8 155 195-401 149-367 (615)
134 TIGR00678 holB DNA polymerase 99.3 3.2E-11 6.9E-16 112.9 14.3 124 233-399 13-167 (188)
135 PRK00411 cdc6 cell division co 99.3 6.4E-11 1.4E-15 123.4 18.1 156 200-401 30-221 (394)
136 PRK09112 DNA polymerase III su 99.3 1.7E-10 3.7E-15 118.1 20.7 180 194-429 17-241 (351)
137 PRK13407 bchI magnesium chelat 99.3 1.4E-11 3.1E-16 124.8 12.5 156 195-401 3-217 (334)
138 PRK12422 chromosomal replicati 99.3 2.6E-11 5.7E-16 127.8 14.2 138 235-411 142-295 (445)
139 PRK14088 dnaA chromosomal repl 99.3 1.5E-11 3.3E-16 129.7 11.4 191 193-430 98-307 (440)
140 PRK05201 hslU ATP-dependent pr 99.3 4.3E-11 9.3E-16 123.1 13.6 70 201-270 16-86 (443)
141 PRK14086 dnaA chromosomal repl 99.3 2.5E-11 5.5E-16 130.5 12.4 191 193-430 281-490 (617)
142 CHL00081 chlI Mg-protoporyphyr 99.3 6.7E-11 1.4E-15 120.3 14.8 156 195-401 12-233 (350)
143 PTZ00112 origin recognition co 99.3 1.2E-10 2.6E-15 127.5 17.5 156 200-402 755-951 (1164)
144 PRK05642 DNA replication initi 99.3 6.1E-11 1.3E-15 115.0 13.1 159 193-399 12-178 (234)
145 TIGR00390 hslU ATP-dependent p 99.3 7.4E-11 1.6E-15 121.3 14.2 68 201-268 13-81 (441)
146 PRK06620 hypothetical protein; 99.2 1.1E-10 2.4E-15 111.7 13.9 147 194-401 10-161 (214)
147 PF00308 Bac_DnaA: Bacterial d 99.2 7.1E-11 1.5E-15 113.4 12.4 169 196-410 4-189 (219)
148 PRK10865 protein disaggregatio 99.2 1.8E-10 3.9E-15 130.7 17.7 161 199-401 567-780 (857)
149 TIGR02030 BchI-ChlI magnesium 99.2 3.1E-10 6.8E-15 115.3 15.8 152 198-400 2-219 (337)
150 COG0542 clpA ATP-binding subun 99.2 7.5E-11 1.6E-15 129.2 12.0 157 200-402 491-707 (786)
151 TIGR03346 chaperone_ClpB ATP-d 99.2 3.2E-10 7E-15 128.9 17.1 160 200-401 565-777 (852)
152 PF07724 AAA_2: AAA domain (Cd 99.2 1.8E-11 3.9E-16 112.9 5.5 107 234-365 3-130 (171)
153 TIGR03345 VI_ClpV1 type VI sec 99.2 1.6E-10 3.5E-15 130.7 14.2 156 200-401 566-781 (852)
154 KOG1969 DNA replication checkp 99.2 4.1E-10 8.9E-15 120.4 15.9 174 191-402 262-483 (877)
155 PRK05707 DNA polymerase III su 99.2 1E-09 2.2E-14 111.4 18.0 125 233-400 21-178 (328)
156 PRK11331 5-methylcytosine-spec 99.2 3.2E-10 6.9E-15 117.9 14.4 46 199-259 174-219 (459)
157 PRK14087 dnaA chromosomal repl 99.2 3.2E-10 7E-15 119.9 13.8 188 196-430 111-321 (450)
158 CHL00095 clpC Clp protease ATP 99.2 3E-10 6.4E-15 128.8 14.0 155 200-401 509-733 (821)
159 PF07726 AAA_3: ATPase family 99.1 5.3E-11 1.1E-15 103.1 5.3 106 236-379 1-130 (131)
160 PRK07952 DNA replication prote 99.1 1.3E-10 2.7E-15 113.1 8.2 98 193-297 65-174 (244)
161 smart00763 AAA_PrkA PrkA AAA d 99.1 1.4E-09 3.1E-14 110.3 15.2 64 197-267 47-118 (361)
162 PRK08058 DNA polymerase III su 99.1 8.2E-10 1.8E-14 112.5 13.5 146 198-398 3-180 (329)
163 PRK08116 hypothetical protein; 99.1 5.6E-10 1.2E-14 110.4 11.8 148 197-388 82-250 (268)
164 PRK07399 DNA polymerase III su 99.1 2.5E-09 5.4E-14 108.1 16.3 173 198-428 2-221 (314)
165 PRK09087 hypothetical protein; 99.1 1.4E-09 3E-14 104.9 13.2 120 235-403 45-169 (226)
166 PRK08181 transposase; Validate 99.1 6.1E-10 1.3E-14 109.8 10.3 64 234-297 106-179 (269)
167 COG0542 clpA ATP-binding subun 99.1 5.4E-10 1.2E-14 122.6 10.6 154 198-400 168-346 (786)
168 COG1474 CDC6 Cdc6-related prot 99.1 4.9E-09 1.1E-13 107.9 16.8 152 202-401 19-204 (366)
169 PRK13531 regulatory ATPase Rav 99.1 1.2E-09 2.7E-14 114.5 12.4 128 234-399 39-193 (498)
170 COG0470 HolB ATPase involved i 99.0 2.6E-09 5.5E-14 108.0 14.0 117 235-394 25-175 (325)
171 TIGR02442 Cob-chelat-sub cobal 99.0 5.6E-10 1.2E-14 123.0 9.8 152 198-400 2-214 (633)
172 TIGR00602 rad24 checkpoint pro 99.0 3.2E-09 6.8E-14 115.8 15.1 169 187-403 73-290 (637)
173 smart00382 AAA ATPases associa 99.0 1E-09 2.2E-14 95.2 8.9 65 234-298 2-91 (148)
174 PF01078 Mg_chelatase: Magnesi 99.0 6.4E-10 1.4E-14 104.5 7.1 46 198-258 1-46 (206)
175 PRK12377 putative replication 99.0 1.3E-09 2.8E-14 106.3 9.4 93 197-296 71-174 (248)
176 PRK06526 transposase; Provisio 99.0 1.3E-09 2.8E-14 106.9 8.5 64 234-297 98-171 (254)
177 PF03215 Rad17: Rad17 cell cyc 99.0 7E-09 1.5E-13 111.0 14.4 174 183-403 4-229 (519)
178 PRK06964 DNA polymerase III su 99.0 9.2E-09 2E-13 104.7 14.3 125 232-399 19-203 (342)
179 KOG0741 AAA+-type ATPase [Post 98.9 9.3E-09 2E-13 106.6 13.6 136 234-398 538-684 (744)
180 PRK11608 pspF phage shock prot 98.9 9.6E-09 2.1E-13 104.5 13.7 154 198-401 4-195 (326)
181 PRK08939 primosomal protein Dn 98.9 2.8E-09 6.1E-14 107.2 9.1 96 196-296 123-228 (306)
182 PF13177 DNA_pol3_delta2: DNA 98.9 2.2E-08 4.8E-13 91.6 14.1 112 233-387 18-161 (162)
183 smart00350 MCM minichromosome 98.9 3.1E-09 6.6E-14 114.5 9.7 127 236-401 238-401 (509)
184 PRK04132 replication factor C 98.9 1.9E-08 4.1E-13 112.5 15.6 123 237-402 567-704 (846)
185 PF00158 Sigma54_activat: Sigm 98.9 5.7E-09 1.2E-13 96.0 9.5 85 202-297 1-105 (168)
186 TIGR02974 phageshock_pspF psp 98.9 1.4E-08 2.9E-13 103.5 12.3 149 203-401 2-188 (329)
187 TIGR01817 nifA Nif-specific re 98.9 2E-08 4.3E-13 109.1 14.1 156 196-401 192-385 (534)
188 PRK06871 DNA polymerase III su 98.9 7.8E-08 1.7E-12 97.3 17.4 123 234-399 24-178 (325)
189 PRK11388 DNA-binding transcrip 98.9 2E-08 4.4E-13 111.2 14.0 90 197-297 322-428 (638)
190 TIGR02031 BchD-ChlD magnesium 98.9 1.6E-08 3.5E-13 110.4 12.5 128 235-400 17-174 (589)
191 PF12775 AAA_7: P-loop contain 98.8 9.8E-09 2.1E-13 101.7 9.4 134 234-401 33-194 (272)
192 PRK07993 DNA polymerase III su 98.8 1.2E-07 2.7E-12 96.6 17.0 123 233-398 23-178 (334)
193 PRK08769 DNA polymerase III su 98.8 1.5E-07 3.2E-12 95.1 17.3 123 233-398 25-183 (319)
194 PF14532 Sigma54_activ_2: Sigm 98.8 1.6E-08 3.5E-13 89.8 8.9 77 204-297 2-81 (138)
195 PRK08699 DNA polymerase III su 98.8 3.6E-08 7.9E-13 100.0 12.4 123 233-398 20-183 (325)
196 KOG0991 Replication factor C, 98.8 3.5E-08 7.6E-13 93.0 10.3 152 191-398 18-183 (333)
197 COG1219 ClpX ATP-dependent pro 98.8 2.1E-08 4.5E-13 98.5 8.5 65 234-298 97-175 (408)
198 PRK06090 DNA polymerase III su 98.8 8.2E-08 1.8E-12 96.9 12.8 123 233-398 24-178 (319)
199 COG0593 DnaA ATPase involved i 98.8 6.1E-08 1.3E-12 100.0 11.9 172 194-412 81-269 (408)
200 PRK06835 DNA replication prote 98.7 2.6E-08 5.7E-13 101.1 8.9 83 207-296 163-257 (329)
201 TIGR02329 propionate_PrpR prop 98.7 7.5E-08 1.6E-12 103.6 12.6 158 195-402 207-403 (526)
202 PRK10820 DNA-binding transcrip 98.7 1.7E-07 3.8E-12 101.2 15.2 91 195-297 199-310 (520)
203 PRK15424 propionate catabolism 98.7 8.9E-08 1.9E-12 103.1 12.4 89 197-297 216-334 (538)
204 PF06068 TIP49: TIP49 C-termin 98.7 2.3E-07 4.9E-12 93.8 14.3 77 199-283 23-106 (398)
205 PRK06921 hypothetical protein; 98.7 6.8E-08 1.5E-12 95.5 10.0 63 234-296 117-188 (266)
206 PF01695 IstB_IS21: IstB-like 98.7 1E-08 2.2E-13 95.3 3.1 63 234-296 47-119 (178)
207 PRK15429 formate hydrogenlyase 98.7 2.2E-07 4.8E-12 103.8 14.0 89 197-297 373-482 (686)
208 KOG0745 Putative ATP-dependent 98.7 7.4E-08 1.6E-12 98.0 9.0 131 234-388 226-387 (564)
209 PRK09183 transposase/IS protei 98.7 6.1E-08 1.3E-12 95.5 8.2 64 234-297 102-176 (259)
210 COG1484 DnaC DNA replication p 98.6 9.9E-08 2.1E-12 93.6 9.2 92 197-296 76-178 (254)
211 COG1224 TIP49 DNA helicase TIP 98.6 9.7E-07 2.1E-11 88.2 15.5 75 200-282 39-120 (450)
212 TIGR00368 Mg chelatase-related 98.6 1.3E-07 2.8E-12 101.1 10.0 47 197-258 189-235 (499)
213 COG1239 ChlI Mg-chelatase subu 98.6 2.4E-07 5.3E-12 94.7 10.6 153 196-401 13-233 (423)
214 PRK05022 anaerobic nitric oxid 98.6 4.5E-07 9.7E-12 97.9 13.2 88 198-297 185-293 (509)
215 PRK09862 putative ATP-dependen 98.6 1.4E-07 3.1E-12 100.5 9.2 142 197-391 188-392 (506)
216 PF08740 BCS1_N: BCS1 N termin 98.6 3.5E-06 7.6E-11 78.8 16.7 136 50-202 26-187 (187)
217 TIGR03015 pepcterm_ATPase puta 98.6 9.2E-07 2E-11 87.1 13.2 29 371-401 178-206 (269)
218 TIGR00764 lon_rel lon-related 98.5 2.3E-06 5E-11 93.9 17.2 50 197-261 15-64 (608)
219 PF13173 AAA_14: AAA domain 98.5 2E-07 4.3E-12 81.7 7.3 63 235-297 3-73 (128)
220 COG1221 PspF Transcriptional r 98.5 3.7E-07 8E-12 94.1 10.1 158 197-402 75-266 (403)
221 PF00910 RNA_helicase: RNA hel 98.5 1.3E-07 2.7E-12 80.4 5.4 61 237-297 1-61 (107)
222 PF12774 AAA_6: Hydrolytic ATP 98.5 2.2E-06 4.8E-11 82.9 14.4 64 234-297 32-96 (231)
223 PRK05818 DNA polymerase III su 98.5 6.3E-06 1.4E-10 80.4 16.7 113 232-387 5-147 (261)
224 PRK10923 glnG nitrogen regulat 98.5 1.2E-06 2.7E-11 93.4 12.5 154 198-401 136-327 (469)
225 PF01637 Arch_ATPase: Archaeal 98.5 1.1E-06 2.3E-11 83.9 10.5 158 234-427 20-233 (234)
226 COG1220 HslU ATP-dependent pro 98.5 2.2E-06 4.9E-11 85.0 12.7 67 202-268 17-84 (444)
227 KOG1942 DNA helicase, TBP-inte 98.5 1.3E-05 2.7E-10 78.3 17.6 63 200-270 38-102 (456)
228 KOG0990 Replication factor C, 98.4 5E-07 1.1E-11 89.1 7.2 155 187-399 30-202 (360)
229 PHA02624 large T antigen; Prov 98.4 9.5E-07 2.1E-11 94.6 9.6 125 230-386 427-561 (647)
230 PF05621 TniB: Bacterial TniB 98.4 3.6E-06 7.8E-11 83.5 12.4 182 161-399 9-226 (302)
231 KOG1051 Chaperone HSP104 and r 98.4 1.8E-06 4E-11 96.4 11.3 92 200-297 562-672 (898)
232 PTZ00111 DNA replication licen 98.4 1.5E-06 3.3E-11 97.2 10.3 127 236-400 494-657 (915)
233 PRK05917 DNA polymerase III su 98.4 4.8E-06 1E-10 82.8 12.8 111 234-387 19-154 (290)
234 PF13401 AAA_22: AAA domain; P 98.4 8.7E-07 1.9E-11 77.2 6.8 38 234-271 4-49 (131)
235 COG3829 RocR Transcriptional r 98.4 2.7E-06 5.9E-11 89.5 11.3 93 193-297 238-352 (560)
236 TIGR02915 PEP_resp_reg putativ 98.4 4.3E-06 9.4E-11 88.6 13.2 88 198-297 137-245 (445)
237 COG5271 MDN1 AAA ATPase contai 98.3 2.6E-06 5.5E-11 97.7 11.5 132 234-408 1543-1711(4600)
238 PF05729 NACHT: NACHT domain 98.3 2.3E-06 5E-11 77.2 9.4 24 235-258 1-24 (166)
239 PRK07132 DNA polymerase III su 98.3 3.4E-06 7.5E-11 84.5 11.4 123 233-398 17-160 (299)
240 COG0606 Predicted ATPase with 98.3 6.8E-07 1.5E-11 92.8 5.9 48 196-258 175-222 (490)
241 TIGR01818 ntrC nitrogen regula 98.3 6.1E-06 1.3E-10 87.9 12.9 152 200-401 134-323 (463)
242 PRK11361 acetoacetate metaboli 98.3 5.7E-06 1.2E-10 87.9 12.4 87 199-297 142-249 (457)
243 PRK07276 DNA polymerase III su 98.2 4E-05 8.6E-10 76.4 16.4 119 233-397 23-172 (290)
244 PF03969 AFG1_ATPase: AFG1-lik 98.2 1.2E-06 2.6E-11 90.2 5.6 97 230-365 58-168 (362)
245 PRK15115 response regulator Gl 98.2 9.6E-06 2.1E-10 86.0 12.2 63 234-297 157-240 (444)
246 PLN03210 Resistant to P. syrin 98.2 4.2E-05 9.2E-10 90.4 18.3 58 191-259 175-232 (1153)
247 PRK13406 bchD magnesium chelat 98.2 1.5E-05 3.2E-10 86.9 13.0 120 235-392 26-174 (584)
248 KOG2035 Replication factor C, 98.2 1.8E-05 3.9E-10 76.8 11.9 168 193-416 6-216 (351)
249 KOG1970 Checkpoint RAD17-RFC c 98.2 1.7E-05 3.6E-10 83.4 11.9 73 185-265 69-141 (634)
250 PHA02774 E1; Provisional 98.1 1.5E-05 3.2E-10 85.3 10.8 58 230-294 430-488 (613)
251 PF00931 NB-ARC: NB-ARC domain 98.1 2.6E-05 5.7E-10 77.4 11.3 148 233-426 18-200 (287)
252 PRK10365 transcriptional regul 98.1 2.6E-05 5.7E-10 82.4 11.8 85 201-297 140-245 (441)
253 PHA00729 NTP-binding motif con 98.1 4.5E-06 9.7E-11 79.9 5.2 28 235-262 18-45 (226)
254 KOG2227 Pre-initiation complex 98.0 5.5E-05 1.2E-09 78.3 12.8 160 200-405 150-343 (529)
255 KOG1514 Origin recognition com 98.0 0.00017 3.6E-09 78.0 16.4 130 236-403 424-592 (767)
256 COG2204 AtoC Response regulato 98.0 6.7E-05 1.5E-09 78.9 12.8 90 197-297 138-247 (464)
257 KOG1968 Replication factor C, 98.0 1.9E-05 4.2E-10 88.9 8.4 192 193-429 313-529 (871)
258 PF13207 AAA_17: AAA domain; P 97.9 5E-06 1.1E-10 71.5 2.4 30 237-266 2-31 (121)
259 KOG0478 DNA replication licens 97.9 0.00011 2.4E-09 79.0 12.4 160 201-401 430-627 (804)
260 PRK08118 topology modulation p 97.9 3.1E-05 6.8E-10 71.2 6.7 31 236-266 3-33 (167)
261 PRK15455 PrkA family serine pr 97.9 1.7E-05 3.6E-10 84.9 5.5 66 195-267 71-137 (644)
262 PF05707 Zot: Zonular occluden 97.9 7E-05 1.5E-09 70.4 9.0 114 237-387 3-146 (193)
263 PRK07261 topology modulation p 97.9 2.9E-05 6.2E-10 71.6 6.3 30 237-266 3-32 (171)
264 cd01120 RecA-like_NTPases RecA 97.8 7.1E-05 1.5E-09 66.9 8.1 29 237-265 2-33 (165)
265 KOG2170 ATPase of the AAA+ sup 97.8 8.3E-05 1.8E-09 73.1 8.9 89 201-297 83-190 (344)
266 PRK00131 aroK shikimate kinase 97.8 1.5E-05 3.2E-10 72.9 3.5 35 232-266 2-36 (175)
267 TIGR02237 recomb_radB DNA repa 97.8 6.4E-05 1.4E-09 71.3 7.8 41 229-269 7-50 (209)
268 PF06309 Torsin: Torsin; Inte 97.8 3.3E-05 7.3E-10 67.0 4.8 50 201-258 26-77 (127)
269 PRK14722 flhF flagellar biosyn 97.7 8.6E-05 1.9E-09 76.5 7.8 104 234-373 137-267 (374)
270 TIGR01618 phage_P_loop phage n 97.7 3.8E-05 8.2E-10 73.6 4.5 22 235-256 13-34 (220)
271 PRK09361 radB DNA repair and r 97.6 0.00012 2.5E-09 70.4 7.0 40 229-268 18-60 (225)
272 PF00493 MCM: MCM2/3/5 family 97.6 2E-05 4.2E-10 80.5 1.1 128 236-401 59-222 (331)
273 PTZ00202 tuzin; Provisional 97.6 0.002 4.3E-08 67.2 15.5 77 195-283 257-333 (550)
274 PF05272 VirE: Virulence-assoc 97.5 0.00023 5E-09 67.2 7.5 60 230-297 48-107 (198)
275 cd00464 SK Shikimate kinase (S 97.5 5.6E-05 1.2E-09 67.7 3.2 31 236-266 1-31 (154)
276 PRK13947 shikimate kinase; Pro 97.5 5.7E-05 1.2E-09 69.2 3.3 32 236-267 3-34 (171)
277 PRK03839 putative kinase; Prov 97.5 5.2E-05 1.1E-09 70.2 3.1 30 237-266 3-32 (180)
278 COG3604 FhlA Transcriptional r 97.5 0.0004 8.6E-09 72.7 9.6 91 196-297 219-329 (550)
279 PF13671 AAA_33: AAA domain; P 97.5 3.7E-05 8.1E-10 68.0 1.8 28 237-264 2-29 (143)
280 PRK00625 shikimate kinase; Pro 97.5 6E-05 1.3E-09 69.7 3.1 31 236-266 2-32 (173)
281 PRK12723 flagellar biosynthesi 97.5 0.00056 1.2E-08 71.1 10.3 26 233-258 173-198 (388)
282 KOG1051 Chaperone HSP104 and r 97.5 0.00044 9.6E-09 77.8 10.2 150 199-398 185-361 (898)
283 PRK13949 shikimate kinase; Pro 97.5 6.6E-05 1.4E-09 69.1 3.1 32 235-266 2-33 (169)
284 cd01394 radB RadB. The archaea 97.5 0.00037 8.1E-09 66.5 8.5 38 230-267 15-55 (218)
285 COG1373 Predicted ATPase (AAA+ 97.5 0.00091 2E-08 70.0 11.3 123 228-394 32-161 (398)
286 COG0703 AroK Shikimate kinase 97.4 7.6E-05 1.6E-09 68.4 2.7 32 235-266 3-34 (172)
287 KOG2228 Origin recognition com 97.4 0.00057 1.2E-08 68.3 8.6 155 201-402 25-221 (408)
288 PRK00409 recombination and DNA 97.4 0.00035 7.6E-09 79.0 8.1 63 234-296 327-418 (782)
289 PF10443 RNA12: RNA12 protein; 97.4 0.0026 5.6E-08 66.1 13.6 89 357-447 186-297 (431)
290 TIGR02688 conserved hypothetic 97.4 0.0025 5.4E-08 66.4 13.5 60 234-297 209-272 (449)
291 PRK06067 flagellar accessory p 97.4 0.00032 7E-09 67.8 6.7 36 230-265 21-59 (234)
292 KOG2680 DNA helicase TIP49, TB 97.4 0.00095 2.1E-08 65.7 9.7 52 357-411 319-382 (454)
293 PRK13948 shikimate kinase; Pro 97.4 0.00013 2.9E-09 68.0 3.6 35 232-266 8-42 (182)
294 PRK08154 anaerobic benzoate ca 97.4 0.00027 5.9E-09 71.5 6.0 58 204-266 108-165 (309)
295 cd01393 recA_like RecA is a b 97.4 0.00051 1.1E-08 65.8 7.7 30 229-258 14-43 (226)
296 COG1618 Predicted nucleotide k 97.4 0.00092 2E-08 60.3 8.5 25 234-258 5-29 (179)
297 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00012 2.6E-09 67.8 3.1 29 237-265 2-30 (183)
298 PRK14531 adenylate kinase; Pro 97.4 0.00013 2.9E-09 67.9 3.3 32 234-265 2-33 (183)
299 TIGR01069 mutS2 MutS2 family p 97.4 0.00048 1E-08 77.8 8.3 62 235-296 323-413 (771)
300 cd03281 ABC_MSH5_euk MutS5 hom 97.3 0.0007 1.5E-08 64.7 8.2 62 235-296 30-119 (213)
301 KOG3347 Predicted nucleotide k 97.3 0.00013 2.8E-09 64.7 2.8 32 234-265 7-38 (176)
302 PRK06217 hypothetical protein; 97.3 0.00014 2.9E-09 67.8 3.1 31 236-266 3-33 (183)
303 cd02020 CMPK Cytidine monophos 97.3 0.00014 3E-09 64.4 3.0 30 237-266 2-31 (147)
304 PF13604 AAA_30: AAA domain; P 97.3 0.0016 3.5E-08 61.4 10.4 35 234-268 18-55 (196)
305 PRK14532 adenylate kinase; Pro 97.3 0.00013 2.9E-09 67.9 3.0 30 236-265 2-31 (188)
306 TIGR00150 HI0065_YjeE ATPase, 97.3 0.0011 2.3E-08 58.5 8.5 27 234-260 22-48 (133)
307 cd02021 GntK Gluconate kinase 97.3 0.00014 3E-09 65.2 2.8 28 237-264 2-29 (150)
308 TIGR02012 tigrfam_recA protein 97.3 0.00066 1.4E-08 68.7 8.0 69 230-298 51-146 (321)
309 PRK13765 ATP-dependent proteas 97.3 0.00031 6.8E-09 77.3 6.1 52 194-260 25-76 (637)
310 KOG0480 DNA replication licens 97.3 0.00083 1.8E-08 72.0 8.9 163 199-402 344-544 (764)
311 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.00058 1.3E-08 65.8 7.4 28 230-257 15-42 (235)
312 PRK13946 shikimate kinase; Pro 97.3 0.00016 3.4E-09 67.5 3.2 34 234-267 10-43 (184)
313 PRK05800 cobU adenosylcobinami 97.3 0.00033 7.2E-09 64.5 5.4 63 236-298 3-89 (170)
314 TIGR01313 therm_gnt_kin carboh 97.3 0.00015 3.3E-09 65.9 3.1 28 237-264 1-28 (163)
315 COG3283 TyrR Transcriptional r 97.3 0.0016 3.5E-08 65.6 10.4 98 189-297 193-305 (511)
316 PF14516 AAA_35: AAA-like doma 97.3 0.0024 5.1E-08 65.3 12.0 37 234-270 31-70 (331)
317 TIGR03499 FlhF flagellar biosy 97.3 0.00084 1.8E-08 67.0 8.1 59 235-293 195-280 (282)
318 COG5245 DYN1 Dynein, heavy cha 97.3 0.00074 1.6E-08 77.9 8.3 138 233-401 1493-1659(3164)
319 cd00983 recA RecA is a bacter 97.3 0.0008 1.7E-08 68.2 7.8 69 230-298 51-146 (325)
320 cd01428 ADK Adenylate kinase ( 97.3 0.00019 4E-09 67.0 3.1 29 237-265 2-30 (194)
321 PRK05057 aroK shikimate kinase 97.3 0.00021 4.5E-09 66.0 3.4 34 234-267 4-37 (172)
322 PRK06581 DNA polymerase III su 97.2 0.0057 1.2E-07 59.1 12.9 125 234-401 15-162 (263)
323 COG1102 Cmk Cytidylate kinase 97.2 0.0002 4.3E-09 64.5 2.8 28 237-264 3-30 (179)
324 PF13191 AAA_16: AAA ATPase do 97.2 0.00014 3E-09 66.9 1.8 37 234-270 24-63 (185)
325 COG1485 Predicted ATPase [Gene 97.2 0.00072 1.6E-08 68.2 6.8 31 230-260 61-91 (367)
326 PRK03731 aroL shikimate kinase 97.2 0.00025 5.4E-09 65.0 3.3 31 236-266 4-34 (171)
327 PRK08533 flagellar accessory p 97.2 0.0015 3.3E-08 63.2 8.8 27 230-256 20-46 (230)
328 cd03283 ABC_MutS-like MutS-lik 97.2 0.0012 2.5E-08 62.5 7.7 63 234-296 25-116 (199)
329 PF00437 T2SE: Type II/IV secr 97.2 0.00064 1.4E-08 67.2 5.8 91 195-296 99-208 (270)
330 COG1855 ATPase (PilT family) [ 97.2 0.00045 9.8E-09 71.3 4.7 55 187-259 232-288 (604)
331 COG1241 MCM2 Predicted ATPase 97.1 0.0007 1.5E-08 74.4 6.4 61 237-297 322-395 (682)
332 PRK14530 adenylate kinase; Pro 97.1 0.00032 6.9E-09 67.0 3.3 30 236-265 5-34 (215)
333 PF13086 AAA_11: AAA domain; P 97.1 0.00033 7.1E-09 66.6 3.2 22 237-258 20-41 (236)
334 PRK02496 adk adenylate kinase; 97.1 0.00032 7E-09 65.1 3.0 29 237-265 4-32 (184)
335 PRK14528 adenylate kinase; Pro 97.1 0.00035 7.5E-09 65.3 3.2 30 236-265 3-32 (186)
336 PTZ00088 adenylate kinase 1; P 97.1 0.00035 7.5E-09 67.6 3.3 30 236-265 8-37 (229)
337 PRK06762 hypothetical protein; 97.1 0.00037 8E-09 63.5 3.3 32 235-266 3-34 (166)
338 PRK05973 replicative DNA helic 97.1 0.0016 3.6E-08 63.1 7.9 37 230-266 60-99 (237)
339 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00035 7.5E-09 64.7 3.1 30 236-265 5-34 (188)
340 COG1936 Predicted nucleotide k 97.1 0.00031 6.8E-09 64.0 2.6 29 237-266 3-31 (180)
341 PRK06547 hypothetical protein; 97.1 0.0004 8.6E-09 64.2 3.2 34 233-266 14-47 (172)
342 PLN02199 shikimate kinase 97.1 0.00086 1.9E-08 66.7 5.6 33 234-266 102-134 (303)
343 cd00227 CPT Chloramphenicol (C 97.1 0.00038 8.3E-09 64.2 2.9 31 235-265 3-33 (175)
344 PF07693 KAP_NTPase: KAP famil 97.0 0.0083 1.8E-07 60.6 12.9 30 232-261 18-47 (325)
345 PRK11823 DNA repair protein Ra 97.0 0.0017 3.7E-08 69.0 8.1 69 230-298 76-169 (446)
346 TIGR03878 thermo_KaiC_2 KaiC d 97.0 0.0012 2.5E-08 65.2 6.3 39 230-268 32-73 (259)
347 PF06431 Polyoma_lg_T_C: Polyo 97.0 0.0046 1E-07 62.7 10.2 138 209-386 138-285 (417)
348 PRK05703 flhF flagellar biosyn 97.0 0.0073 1.6E-07 63.8 12.2 36 234-269 221-261 (424)
349 cd00267 ABC_ATPase ABC (ATP-bi 97.0 0.0011 2.4E-08 59.9 5.3 26 234-259 25-50 (157)
350 PLN02200 adenylate kinase fami 97.0 0.00056 1.2E-08 66.4 3.5 31 234-264 43-73 (234)
351 cd01121 Sms Sms (bacterial rad 97.0 0.0017 3.7E-08 67.3 7.3 69 230-298 78-171 (372)
352 TIGR01351 adk adenylate kinase 97.0 0.00048 1E-08 65.5 3.0 28 237-264 2-29 (210)
353 PRK00279 adk adenylate kinase; 97.0 0.00052 1.1E-08 65.6 3.2 29 237-265 3-31 (215)
354 cd00544 CobU Adenosylcobinamid 97.0 0.0015 3.3E-08 60.1 6.0 62 237-298 2-86 (169)
355 PF13245 AAA_19: Part of AAA d 97.0 0.00077 1.7E-08 53.5 3.5 23 236-258 12-35 (76)
356 PRK08233 hypothetical protein; 97.0 0.003 6.4E-08 58.1 7.9 24 236-259 5-28 (182)
357 PRK04296 thymidine kinase; Pro 97.0 0.0061 1.3E-07 57.1 10.1 30 236-265 4-36 (190)
358 PRK14527 adenylate kinase; Pro 97.0 0.00048 1E-08 64.5 2.6 31 234-264 6-36 (191)
359 PRK11889 flhF flagellar biosyn 96.9 0.0085 1.8E-07 62.1 11.6 49 206-258 217-265 (436)
360 PRK04182 cytidylate kinase; Pr 96.9 0.00061 1.3E-08 62.5 2.9 28 237-264 3-30 (180)
361 cd02019 NK Nucleoside/nucleoti 96.9 0.00083 1.8E-08 52.2 3.2 22 237-258 2-23 (69)
362 PF00406 ADK: Adenylate kinase 96.9 0.00053 1.2E-08 61.6 2.4 26 239-264 1-26 (151)
363 PF08298 AAA_PrkA: PrkA AAA do 96.9 0.0017 3.7E-08 65.9 5.9 63 199-268 59-123 (358)
364 COG1116 TauB ABC-type nitrate/ 96.8 0.005 1.1E-07 59.5 8.7 23 236-258 31-53 (248)
365 PRK04841 transcriptional regul 96.8 0.033 7.1E-07 64.3 17.1 33 234-267 32-64 (903)
366 PRK09376 rho transcription ter 96.8 0.0017 3.8E-08 67.0 5.7 23 237-259 172-194 (416)
367 PF04665 Pox_A32: Poxvirus A32 96.8 0.019 4.2E-07 55.7 12.7 45 355-402 128-172 (241)
368 PF13521 AAA_28: AAA domain; P 96.8 0.00073 1.6E-08 61.4 2.7 26 237-263 2-27 (163)
369 PF13238 AAA_18: AAA domain; P 96.8 0.00057 1.2E-08 58.8 1.9 22 237-258 1-22 (129)
370 PRK04040 adenylate kinase; Pro 96.8 0.00081 1.8E-08 63.0 3.0 29 235-263 3-33 (188)
371 PRK01184 hypothetical protein; 96.8 0.00079 1.7E-08 62.5 2.9 29 236-265 3-31 (184)
372 TIGR02173 cyt_kin_arch cytidyl 96.8 0.00084 1.8E-08 61.1 2.9 29 237-265 3-31 (171)
373 cd03287 ABC_MSH3_euk MutS3 hom 96.8 0.0041 8.8E-08 59.9 7.7 63 234-296 31-121 (222)
374 COG0563 Adk Adenylate kinase a 96.8 0.00087 1.9E-08 62.3 3.0 29 236-264 2-30 (178)
375 TIGR02858 spore_III_AA stage I 96.8 0.0042 9E-08 61.6 7.9 25 235-259 112-136 (270)
376 PF08433 KTI12: Chromatin asso 96.8 0.0016 3.4E-08 64.6 4.8 61 237-297 4-82 (270)
377 COG4650 RtcR Sigma54-dependent 96.8 0.002 4.4E-08 63.3 5.4 64 234-297 208-294 (531)
378 PF01745 IPT: Isopentenyl tran 96.8 0.00084 1.8E-08 63.4 2.7 33 236-268 3-35 (233)
379 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.0017 3.8E-08 57.9 4.6 65 234-298 26-101 (144)
380 PRK06696 uridine kinase; Valid 96.7 0.0033 7.2E-08 60.4 6.7 38 234-271 22-62 (223)
381 PRK14526 adenylate kinase; Pro 96.7 0.001 2.2E-08 63.6 3.1 28 237-264 3-30 (211)
382 PF10236 DAP3: Mitochondrial r 96.7 0.027 5.7E-07 57.0 13.5 22 381-402 258-279 (309)
383 TIGR01613 primase_Cterm phage/ 96.7 0.0057 1.2E-07 61.7 8.6 63 231-296 73-139 (304)
384 PRK09354 recA recombinase A; P 96.7 0.0044 9.5E-08 63.4 7.7 69 230-298 56-151 (349)
385 cd01129 PulE-GspE PulE/GspE Th 96.7 0.0036 7.9E-08 61.8 6.9 85 197-296 57-160 (264)
386 cd03216 ABC_Carb_Monos_I This 96.7 0.0011 2.5E-08 60.4 3.0 26 233-258 25-50 (163)
387 cd03280 ABC_MutS2 MutS2 homolo 96.7 0.0029 6.3E-08 59.7 5.8 21 235-255 29-49 (200)
388 PRK10646 ADP-binding protein; 96.7 0.0094 2E-07 53.8 8.8 62 235-296 29-112 (153)
389 PF02367 UPF0079: Uncharacteri 96.7 0.0019 4.1E-08 56.2 4.1 64 234-297 15-100 (123)
390 cd01128 rho_factor Transcripti 96.7 0.0037 7.9E-08 61.2 6.5 27 234-260 16-42 (249)
391 cd02027 APSK Adenosine 5'-phos 96.7 0.0013 2.9E-08 59.1 3.2 29 237-265 2-33 (149)
392 cd03243 ABC_MutS_homologs The 96.7 0.007 1.5E-07 57.1 8.3 63 235-297 30-120 (202)
393 PHA02530 pseT polynucleotide k 96.7 0.0011 2.5E-08 66.3 2.9 30 235-264 3-33 (300)
394 PRK12724 flagellar biosynthesi 96.6 0.022 4.8E-07 59.6 12.3 62 208-269 196-262 (432)
395 COG4088 Predicted nucleotide k 96.6 0.0021 4.5E-08 60.3 4.1 23 237-259 4-26 (261)
396 cd03282 ABC_MSH4_euk MutS4 hom 96.6 0.0057 1.2E-07 58.1 7.3 63 234-296 29-119 (204)
397 PRK00771 signal recognition pa 96.6 0.0046 1E-07 65.3 7.2 61 207-268 69-132 (437)
398 TIGR02238 recomb_DMC1 meiotic 96.6 0.0038 8.2E-08 63.3 6.4 27 230-256 92-118 (313)
399 smart00534 MUTSac ATPase domai 96.6 0.0067 1.5E-07 56.5 7.6 61 237-297 2-90 (185)
400 PRK10078 ribose 1,5-bisphospho 96.6 0.0012 2.6E-08 61.6 2.5 30 235-264 3-32 (186)
401 PTZ00035 Rad51 protein; Provis 96.6 0.0059 1.3E-07 62.5 7.7 28 230-257 114-141 (337)
402 TIGR03574 selen_PSTK L-seryl-t 96.6 0.0016 3.5E-08 63.7 3.2 30 237-266 2-34 (249)
403 PF12780 AAA_8: P-loop contain 96.6 0.006 1.3E-07 60.4 7.2 84 201-295 9-99 (268)
404 PRK14021 bifunctional shikimat 96.6 0.0018 3.9E-08 70.5 3.8 38 230-267 1-39 (542)
405 PLN02674 adenylate kinase 96.5 0.0018 3.9E-08 63.1 3.3 31 234-264 31-61 (244)
406 cd01124 KaiC KaiC is a circadi 96.5 0.0019 4E-08 59.7 3.3 29 237-265 2-33 (187)
407 COG0467 RAD55 RecA-superfamily 96.5 0.0022 4.8E-08 63.0 3.8 50 229-280 18-70 (260)
408 KOG3354 Gluconate kinase [Carb 96.5 0.0017 3.7E-08 58.1 2.6 34 232-265 10-43 (191)
409 TIGR02782 TrbB_P P-type conjug 96.5 0.0024 5.1E-08 64.3 4.0 25 234-258 132-156 (299)
410 PRK12339 2-phosphoglycerate ki 96.5 0.0019 4.1E-08 61.0 3.1 29 234-262 3-31 (197)
411 PF13479 AAA_24: AAA domain 96.5 0.0017 3.7E-08 62.0 2.6 65 235-299 4-82 (213)
412 PHA00350 putative assembly pro 96.5 0.0052 1.1E-07 63.9 6.3 61 237-299 4-95 (399)
413 PRK14529 adenylate kinase; Pro 96.5 0.0018 3.9E-08 62.3 2.7 28 237-264 3-30 (223)
414 cd03222 ABC_RNaseL_inhibitor T 96.4 0.0039 8.3E-08 57.9 4.7 65 234-298 25-102 (177)
415 cd02022 DPCK Dephospho-coenzym 96.4 0.0022 4.7E-08 59.5 3.0 29 237-266 2-30 (179)
416 COG2874 FlaH Predicted ATPases 96.4 0.0076 1.6E-07 56.9 6.3 27 230-256 24-50 (235)
417 PRK13764 ATPase; Provisional 96.4 0.0027 5.9E-08 69.3 3.9 26 234-259 257-282 (602)
418 COG5271 MDN1 AAA ATPase contai 96.4 0.032 6.9E-07 65.9 12.1 126 234-399 888-1046(4600)
419 PRK11174 cysteine/glutathione 96.4 0.008 1.7E-07 66.1 7.6 28 231-258 373-400 (588)
420 COG3854 SpoIIIAA ncharacterize 96.4 0.0067 1.4E-07 57.9 5.8 25 235-259 138-162 (308)
421 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.003 6.6E-08 61.3 3.8 40 229-268 16-58 (237)
422 COG2274 SunT ABC-type bacterio 96.4 0.0073 1.6E-07 67.6 7.1 28 231-258 496-523 (709)
423 PF06745 KaiC: KaiC; InterPro 96.4 0.0021 4.6E-08 61.7 2.5 38 229-266 14-55 (226)
424 PLN02459 probable adenylate ki 96.4 0.0027 5.8E-08 62.4 3.2 29 236-264 31-59 (261)
425 PF00519 PPV_E1_C: Papillomavi 96.3 0.0043 9.3E-08 63.6 4.7 59 230-295 258-317 (432)
426 PRK12727 flagellar biosynthesi 96.3 0.014 3E-07 62.7 8.7 26 233-258 349-374 (559)
427 smart00487 DEXDc DEAD-like hel 96.3 0.013 2.8E-07 53.5 7.5 24 235-258 25-49 (201)
428 PRK05541 adenylylsulfate kinas 96.3 0.0026 5.7E-08 58.6 2.9 26 234-259 7-32 (176)
429 PRK00889 adenylylsulfate kinas 96.3 0.0035 7.5E-08 57.7 3.5 25 234-258 4-28 (175)
430 PF03266 NTPase_1: NTPase; In 96.3 0.0024 5.2E-08 58.7 2.4 22 237-258 2-23 (168)
431 TIGR02322 phosphon_PhnN phosph 96.3 0.0024 5.2E-08 58.9 2.4 25 236-260 3-27 (179)
432 PF00488 MutS_V: MutS domain V 96.3 0.013 2.8E-07 57.0 7.5 62 235-296 44-133 (235)
433 PRK12338 hypothetical protein; 96.3 0.0028 6E-08 64.0 2.9 30 234-263 4-33 (319)
434 PLN02165 adenylate isopentenyl 96.3 0.0033 7.2E-08 63.7 3.4 34 235-268 44-77 (334)
435 TIGR02236 recomb_radA DNA repa 96.3 0.0064 1.4E-07 61.5 5.5 29 230-258 91-119 (310)
436 PRK11545 gntK gluconate kinase 96.3 0.0033 7.1E-08 57.5 3.1 26 240-265 1-26 (163)
437 PRK12608 transcription termina 96.2 0.0085 1.8E-07 61.7 6.3 24 236-259 135-158 (380)
438 KOG2383 Predicted ATPase [Gene 96.2 0.012 2.6E-07 60.3 7.2 25 232-256 112-136 (467)
439 PRK13808 adenylate kinase; Pro 96.2 0.0031 6.7E-08 64.1 3.0 29 237-265 3-31 (333)
440 PRK11176 lipid transporter ATP 96.2 0.01 2.2E-07 65.3 7.3 27 232-258 367-393 (582)
441 cd03227 ABC_Class2 ABC-type Cl 96.2 0.012 2.5E-07 53.6 6.6 64 235-298 22-112 (162)
442 COG3378 Phage associated DNA p 96.2 0.019 4.1E-07 61.7 9.0 66 231-296 227-293 (517)
443 cd03286 ABC_MSH6_euk MutS6 hom 96.2 0.014 2.9E-07 56.1 7.2 63 234-296 30-120 (218)
444 cd01130 VirB11-like_ATPase Typ 96.2 0.0032 6.9E-08 58.7 2.8 26 234-259 25-50 (186)
445 PRK09825 idnK D-gluconate kina 96.2 0.0033 7.1E-08 58.3 2.9 27 236-262 5-31 (176)
446 PRK04220 2-phosphoglycerate ki 96.2 0.0061 1.3E-07 61.0 4.8 28 234-261 92-119 (301)
447 PRK14730 coaE dephospho-CoA ki 96.2 0.0035 7.6E-08 59.1 3.0 31 236-266 3-33 (195)
448 PF01583 APS_kinase: Adenylyls 96.2 0.0037 8.1E-08 56.6 3.1 35 236-270 4-41 (156)
449 TIGR00064 ftsY signal recognit 96.2 0.0086 1.9E-07 59.5 5.9 36 234-269 72-110 (272)
450 PRK09519 recA DNA recombinatio 96.2 0.011 2.5E-07 66.2 7.3 69 230-298 56-151 (790)
451 cd00984 DnaB_C DnaB helicase C 96.2 0.0044 9.5E-08 60.0 3.6 39 230-268 9-51 (242)
452 PRK13833 conjugal transfer pro 96.2 0.0047 1E-07 62.7 4.0 25 234-258 144-168 (323)
453 TIGR02655 circ_KaiC circadian 96.2 0.0068 1.5E-07 65.2 5.4 50 230-281 17-70 (484)
454 PLN03186 DNA repair protein RA 96.1 0.01 2.2E-07 60.8 6.3 27 230-256 119-145 (342)
455 PF03029 ATP_bind_1: Conserved 96.1 0.0031 6.7E-08 61.4 2.5 30 239-268 1-33 (238)
456 PF00448 SRP54: SRP54-type pro 96.1 0.0033 7.1E-08 59.3 2.5 25 234-258 1-25 (196)
457 KOG1808 AAA ATPase containing 96.1 0.016 3.5E-07 69.7 8.6 91 196-297 412-519 (1856)
458 PRK12337 2-phosphoglycerate ki 96.1 0.01 2.2E-07 62.6 6.3 29 233-261 254-282 (475)
459 PRK10416 signal recognition pa 96.1 0.0067 1.5E-07 61.6 4.8 34 234-267 114-150 (318)
460 TIGR02857 CydD thiol reductant 96.1 0.015 3.2E-07 63.2 7.7 28 231-258 345-372 (529)
461 PRK13657 cyclic beta-1,2-gluca 96.1 0.012 2.7E-07 64.7 7.1 27 232-258 359-385 (588)
462 PRK14737 gmk guanylate kinase; 96.1 0.0042 9.2E-08 58.1 2.9 26 233-258 3-28 (186)
463 cd04159 Arl10_like Arl10-like 96.1 0.0069 1.5E-07 53.3 4.2 21 237-257 2-22 (159)
464 PRK04328 hypothetical protein; 96.1 0.0054 1.2E-07 60.0 3.8 40 230-269 19-61 (249)
465 cd03115 SRP The signal recogni 96.1 0.0048 1.1E-07 56.5 3.2 34 237-270 3-39 (173)
466 COG0529 CysC Adenylylsulfate k 96.1 0.0079 1.7E-07 55.2 4.5 37 234-270 23-62 (197)
467 TIGR00376 DNA helicase, putati 96.0 0.014 3.1E-07 64.8 7.4 32 235-266 174-208 (637)
468 PRK04301 radA DNA repair and r 96.0 0.0089 1.9E-07 60.7 5.3 28 230-257 98-125 (317)
469 PRK00300 gmk guanylate kinase; 96.0 0.0051 1.1E-07 58.0 3.3 27 233-259 4-30 (205)
470 TIGR02868 CydC thiol reductant 96.0 0.012 2.6E-07 63.9 6.6 28 231-258 358-385 (529)
471 cd02028 UMPK_like Uridine mono 96.0 0.0049 1.1E-07 57.2 3.0 32 237-268 2-36 (179)
472 PF06414 Zeta_toxin: Zeta toxi 96.0 0.0042 9.1E-08 58.6 2.6 39 232-270 13-52 (199)
473 TIGR03263 guanyl_kin guanylate 96.0 0.0035 7.6E-08 57.7 2.0 25 236-260 3-27 (180)
474 cd02024 NRK1 Nicotinamide ribo 96.0 0.0048 1.1E-07 57.7 2.9 29 237-265 2-31 (187)
475 TIGR03880 KaiC_arch_3 KaiC dom 96.0 0.011 2.4E-07 56.6 5.5 38 230-267 12-52 (224)
476 TIGR00416 sms DNA repair prote 96.0 0.015 3.2E-07 62.0 6.9 37 230-266 90-129 (454)
477 PRK05480 uridine/cytidine kina 96.0 0.0057 1.2E-07 58.0 3.4 26 234-259 6-31 (209)
478 PRK08356 hypothetical protein; 96.0 0.005 1.1E-07 57.8 3.0 27 236-263 7-33 (195)
479 cd03284 ABC_MutS1 MutS1 homolo 96.0 0.011 2.3E-07 56.7 5.2 62 235-296 31-120 (216)
480 TIGR00017 cmk cytidylate kinas 96.0 0.0051 1.1E-07 59.0 3.0 30 236-265 4-33 (217)
481 PRK00023 cmk cytidylate kinase 96.0 0.0046 1E-07 59.6 2.7 33 235-267 5-37 (225)
482 PRK00081 coaE dephospho-CoA ki 95.9 0.0051 1.1E-07 57.8 2.9 31 236-267 4-34 (194)
483 TIGR00767 rho transcription te 95.9 0.013 2.8E-07 60.8 6.0 25 235-259 169-193 (415)
484 TIGR03881 KaiC_arch_4 KaiC dom 95.9 0.0051 1.1E-07 59.1 2.9 28 230-257 16-43 (229)
485 COG3267 ExeA Type II secretory 95.9 0.16 3.6E-06 49.3 13.0 129 233-402 49-215 (269)
486 PRK06761 hypothetical protein; 95.9 0.005 1.1E-07 61.3 2.8 32 235-266 4-35 (282)
487 cd00561 CobA_CobO_BtuR ATP:cor 95.9 0.048 1E-06 49.6 9.0 28 237-264 5-35 (159)
488 cd04177 RSR1 RSR1 subgroup. R 95.9 0.025 5.3E-07 51.3 7.2 23 236-258 3-25 (168)
489 TIGR03375 type_I_sec_LssB type 95.9 0.016 3.5E-07 65.1 7.2 28 231-258 488-515 (694)
490 PRK14974 cell division protein 95.9 0.021 4.5E-07 58.4 7.2 34 234-267 140-176 (336)
491 TIGR01448 recD_rel helicase, p 95.9 0.039 8.6E-07 62.2 10.2 24 235-258 339-362 (720)
492 PRK00091 miaA tRNA delta(2)-is 95.9 0.006 1.3E-07 61.6 3.2 33 235-267 5-37 (307)
493 cd02023 UMPK Uridine monophosp 95.9 0.0066 1.4E-07 57.0 3.3 22 237-258 2-23 (198)
494 PF08423 Rad51: Rad51; InterP 95.9 0.014 3E-07 57.5 5.6 29 230-258 34-62 (256)
495 TIGR03796 NHPM_micro_ABC1 NHPM 95.9 0.018 3.9E-07 64.9 7.4 28 231-258 502-529 (710)
496 PRK10867 signal recognition pa 95.8 0.019 4.2E-07 60.5 7.0 62 208-270 74-140 (433)
497 cd04160 Arfrp1 Arfrp1 subfamil 95.8 0.013 2.8E-07 52.8 5.0 22 237-258 2-23 (167)
498 COG2804 PulE Type II secretory 95.8 0.0091 2E-07 63.2 4.5 84 196-296 234-338 (500)
499 PF00485 PRK: Phosphoribulokin 95.8 0.0045 9.7E-08 58.1 2.0 23 237-259 2-24 (194)
500 TIGR00235 udk uridine kinase. 95.8 0.0056 1.2E-07 58.1 2.7 23 237-259 9-31 (207)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-99 Score=764.75 Aligned_cols=432 Identities=53% Similarity=0.854 Sum_probs=399.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccCCeEEEEEeeccCCCCCCcHHHHHHHHHhccccccc
Q 011573 4 KDLFTSLGSIIASGMFLWAMFQQYFPYELRHNIEKYSQRLVSFFYPYVQITFNEFTGDRFMRSEAYSAIENYLSSKSSTQ 83 (482)
Q Consensus 4 ~~~~~~~~s~~a~~ml~~~~~~~~~P~~l~~~l~~~~~~l~~~~~~~~ti~i~E~~~~~~~~~~~y~~~~~~ls~~~~~~ 83 (482)
+.+|+.+||.+|++||+|+|+++++|..++.|+.+++++|+.++++|.++++.|+.+ +..|++|.+++.||+++.++.
T Consensus 1 ~~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~~g--~~~n~~~~aie~yl~~k~~~~ 78 (457)
T KOG0743|consen 1 SSVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISALRGLFGVFSSYALIRIGEQDG--VFRNQLYVAIEVYLSSKSSAI 78 (457)
T ss_pred CCccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCcccEEEEeehhcc--chHHHHHHHHHHhhhccchhh
Confidence 467999999999999999999999999999999999999999999999999999865 889999999999999999989
Q ss_pred ccceEEeeecCCCCceEEecCCCcccccccCCeeEEEEEeeeccCCccccccCCCCCceEEEEEEecccchhhhhhhHHH
Q 011573 84 AKRLKADIIKNSSQSLVLSMDDHEEVADEFQGIKLWWSSGKHISKSQVFSFYPATDEKRYYKLTFHKRHRDLILGPYLVS 163 (482)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~~~~~d~f~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~yl~~ 163 (482)
++|++.+...+ ++++++.+++++++.|.|+|++++|.+.....+.+.+. +...+.++|+|+|+++||++|+.+||++
T Consensus 79 ~~rl~~~~~~~-s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~--~~~~~~r~~~L~f~k~~~e~V~~syl~~ 155 (457)
T KOG0743|consen 79 AKRLTQNLSKN-SKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFV--EREREKRYFELTFHKKPRELVTLSYLPY 155 (457)
T ss_pred hhhhhhhhccc-cccceEEecCCcEEEEEEeceEEEEEEEEEecCccccc--ccCCcceEEEEEecCccHHHhHHhHHHH
Confidence 99999999999 88899999999999999999999999998765554332 4446788999999999999999999999
Q ss_pred HHHhhHHHHhhcccceeeccCC---------CCceeeeccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcC
Q 011573 164 VLKEGREIKVRNRMRKLYTNNG---------SNWVHVVFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWK 234 (482)
Q Consensus 164 ~l~~~~~~~~~~~~~~l~~~~~---------~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~ 234 (482)
+..++++|..+++++++|++++ +.|+++.+.||++|++|+|++++|++|++|+..|+++++||+++|+||+
T Consensus 156 v~~~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawK 235 (457)
T KOG0743|consen 156 VVSKAKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWK 235 (457)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchh
Confidence 9999999999999999998874 4899999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDE 314 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~ 314 (482)
||||||||||||||||+.||||+|++++|+++++++.++.+|++|+..++++||||||||||.+++.+++.++....
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~--- 312 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENF--- 312 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccccccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999998877775322111
Q ss_pred CCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHH
Q 011573 315 GNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKV 394 (482)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~ 394 (482)
....+.+|+|||||++||+||+||++|||||||||+|+|||||+||||||+||+|+||++++++.
T Consensus 313 ---------------~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~ 377 (457)
T KOG0743|consen 313 ---------------EGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKT 377 (457)
T ss_pred ---------------cCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHH
Confidence 11356799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccc-CCCcHHHHHHHhcCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011573 395 LAKNYLNIE-SHNLFDKIGELLGEAKMTPADVAEHLMPKTFPADVEFSLRSLNQALELAKEEARRVK 460 (482)
Q Consensus 395 l~~~~l~~~-~~~~~~~i~~l~~~~~~s~adi~~~l~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~ 460 (482)
|+++||+.. +|.++++|+++..++.+|||||++.||+. ..+++.|+++|+++|+.++.+..+..
T Consensus 378 La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~lm~~--~~dad~~lk~Lv~~l~~~~~~~~~~~ 442 (457)
T KOG0743|consen 378 LASNYLGIEEDHRLFDEIERLIEETEVTPAQVAEELMKN--KNDADVALKGLVEALESKKEKRNKDD 442 (457)
T ss_pred HHHHhcCCCCCcchhHHHHHHhhcCccCHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhhhhccch
Confidence 999999987 49999999999999999999999999973 33999999999999999887665533
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-44 Score=349.24 Aligned_cols=239 Identities=24% Similarity=0.287 Sum_probs=198.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc---
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV--- 270 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~--- 270 (482)
.+-.+++++.|.++++++|.+.+..++.+|+.|.++|+.||+|+|||||||||||.||+|+|++.+..|+.+.-+.+
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK 224 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK 224 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHH
Confidence 34489999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred ---cChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhh
Q 011573 271 ---KDNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFI 345 (482)
Q Consensus 271 ---~~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 345 (482)
++..-++.+|.-+ ..||||||||||++. ++|. ..+.+++..-++|+-+|||.|
T Consensus 225 YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg---~kR~-------------------d~~t~gDrEVQRTmleLL~ql 282 (406)
T COG1222 225 YIGEGARLVRELFELAREKAPSIIFIDEIDAIG---AKRF-------------------DSGTSGDREVQRTMLELLNQL 282 (406)
T ss_pred HhccchHHHHHHHHHHhhcCCeEEEEechhhhh---cccc-------------------cCCCCchHHHHHHHHHHHHhc
Confidence 3445578888776 489999999999962 3332 112345667889999999999
Q ss_pred cccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHH
Q 011573 346 DGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPAD 424 (482)
Q Consensus 346 dg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~ad 424 (482)
||+.. .+++-|||+||+++.|||||+||||||++|+||+|+.++|..|++.+....+....-+++.++. ..|+|+||
T Consensus 283 DGFD~--~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAd 360 (406)
T COG1222 283 DGFDP--RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGAD 360 (406)
T ss_pred cCCCC--CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHH
Confidence 99965 4679999999999999999999999999999999999999999999987654433334445555 34999999
Q ss_pred HHHHhcccC----CCCCHHHHHHHHHHHHHHHHHHH
Q 011573 425 VAEHLMPKT----FPADVEFSLRSLNQALELAKEEA 456 (482)
Q Consensus 425 i~~~l~~~~----~~~~~~~~~~~l~~al~~~~~~~ 456 (482)
|...|.++. ..+...+..+++++|.++.....
T Consensus 361 lkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 361 LKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred HHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHhcc
Confidence 999998742 23344566778888887766544
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-39 Score=340.72 Aligned_cols=237 Identities=23% Similarity=0.322 Sum_probs=203.5
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc--
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV-- 270 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~-- 270 (482)
..+..+|++++|.+++|+++.+.+...+++++.|.++|+.+++|+|||||||||||++|+|+|++.+.+|+.+....+
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 345589999999999999999999999999999999999999999999999999999999999999999999977765
Q ss_pred ----cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhh
Q 011573 271 ----KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNF 344 (482)
Q Consensus 271 ----~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 344 (482)
+++..++++|..++ .||||||||||++. +.|. ++..+...+.+++||+.
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~---~~R~----------------------g~~~~v~~RVlsqLLtE 561 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALA---GSRG----------------------GSSSGVTDRVLSQLLTE 561 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHh---hccC----------------------CCccchHHHHHHHHHHH
Confidence 57788999999986 69999999999964 4552 11225577899999999
Q ss_pred hcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHH
Q 011573 345 IDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPA 423 (482)
Q Consensus 345 ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~a 423 (482)
|||+... .+++||++||+|+.||+||+||||||..|++|+|+.+.|.+|++.++...+.....++..+++ +.|||+|
T Consensus 562 mDG~e~~--k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGA 639 (693)
T KOG0730|consen 562 MDGLEAL--KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGA 639 (693)
T ss_pred ccccccc--CcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChH
Confidence 9999654 569999999999999999999999999999999999999999999998766555566777777 4599999
Q ss_pred HHHHHhcccC------CCCCHHHHHHHHHHHHHHHHHHH
Q 011573 424 DVAEHLMPKT------FPADVEFSLRSLNQALELAKEEA 456 (482)
Q Consensus 424 di~~~l~~~~------~~~~~~~~~~~l~~al~~~~~~~ 456 (482)
||.++|..++ +.+.+.+.++++.++++..++.-
T Consensus 640 el~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 640 EIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSL 678 (693)
T ss_pred HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccC
Confidence 9999988632 44566777788888777666543
No 4
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-39 Score=326.12 Aligned_cols=207 Identities=26% Similarity=0.398 Sum_probs=179.7
Q ss_pred CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc------
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV------ 270 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~------ 270 (482)
.+|++|-|-++.|+++ +.|.+|+++|..|.++|-..|+|+||.||||||||.||+|+|++.+.||+...-++.
T Consensus 301 v~F~dVkG~DEAK~EL-eEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VG 379 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQEL-EEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVG 379 (752)
T ss_pred cccccccChHHHHHHH-HHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhc
Confidence 6799999999999998 778899999999999999999999999999999999999999999999999877765
Q ss_pred cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhccc
Q 011573 271 KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGL 348 (482)
Q Consensus 271 ~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 348 (482)
....+++.||..+. .||||||||||++ .|.|. .......+.|+++||..|||+
T Consensus 380 vGArRVRdLF~aAk~~APcIIFIDEiDav---G~kR~----------------------~~~~~y~kqTlNQLLvEmDGF 434 (752)
T KOG0734|consen 380 VGARRVRDLFAAAKARAPCIIFIDEIDAV---GGKRN----------------------PSDQHYAKQTLNQLLVEMDGF 434 (752)
T ss_pred ccHHHHHHHHHHHHhcCCeEEEEechhhh---cccCC----------------------ccHHHHHHHHHHHHHHHhcCc
Confidence 35788999999874 7999999999995 23332 111226789999999999999
Q ss_pred ccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHHHH
Q 011573 349 WSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADVAE 427 (482)
Q Consensus 349 ~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi~~ 427 (482)
..+ +++|||++||.||.||+||+||||||+||.+|.|+...|.+|++.|+....+....+..-++. +.|||+||+++
T Consensus 435 ~qN--eGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaN 512 (752)
T KOG0734|consen 435 KQN--EGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLAN 512 (752)
T ss_pred CcC--CceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHH
Confidence 765 559999999999999999999999999999999999999999999998766654445555666 45999999997
Q ss_pred Hhcc
Q 011573 428 HLMP 431 (482)
Q Consensus 428 ~l~~ 431 (482)
++-.
T Consensus 513 lVNq 516 (752)
T KOG0734|consen 513 LVNQ 516 (752)
T ss_pred HHHH
Confidence 7654
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-37 Score=318.29 Aligned_cols=225 Identities=23% Similarity=0.317 Sum_probs=187.3
Q ss_pred eccCC-CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc
Q 011573 192 VFEHP-ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV 270 (482)
Q Consensus 192 ~~~~p-~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~ 270 (482)
.+.++ .+|.++.|.+....++.+.+.. +++|+.|..+|+.|+||+|||||||||||+||+|+|++++.|++.++..++
T Consensus 181 ~~~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApei 259 (802)
T KOG0733|consen 181 EFPESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEI 259 (802)
T ss_pred CCCCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhh
Confidence 34443 6799999999999998766655 999999999999999999999999999999999999999999999988766
Q ss_pred ------cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHH
Q 011573 271 ------KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLL 342 (482)
Q Consensus 271 ------~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 342 (482)
+++.+++++|.++. .|||+||||||++. ++|. .....-.++.+++||
T Consensus 260 vSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~---pkRe----------------------~aqreMErRiVaQLl 314 (802)
T KOG0733|consen 260 VSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAIT---PKRE----------------------EAQREMERRIVAQLL 314 (802)
T ss_pred hcccCcccHHHHHHHHHHHhccCCeEEEeecccccc---cchh----------------------hHHHHHHHHHHHHHH
Confidence 57889999999985 79999999999963 4442 122344678999999
Q ss_pred hhhcccccC--CCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCC
Q 011573 343 NFIDGLWSA--CGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAK 419 (482)
Q Consensus 343 ~~ldg~~s~--~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~ 419 (482)
+.||++... .|..++||++||+|+.|||||+|+||||..|.++.|+..+|..|++.......+...-++.++++ +.|
T Consensus 315 t~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPG 394 (802)
T KOG0733|consen 315 TSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPG 394 (802)
T ss_pred HhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCC
Confidence 999998654 24679999999999999999999999999999999999999999999876554443334445555 349
Q ss_pred CCHHHHHHHhcccCCCCCHHHHHHHHHH
Q 011573 420 MTPADVAEHLMPKTFPADVEFSLRSLNQ 447 (482)
Q Consensus 420 ~s~adi~~~l~~~~~~~~~~~~~~~l~~ 447 (482)
|.+||+..++.. .+..|++++++
T Consensus 395 fVGADL~AL~~~-----Aa~vAikR~ld 417 (802)
T KOG0733|consen 395 FVGADLMALCRE-----AAFVAIKRILD 417 (802)
T ss_pred ccchhHHHHHHH-----HHHHHHHHHhh
Confidence 999999988773 56777777655
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-36 Score=308.66 Aligned_cols=213 Identities=23% Similarity=0.321 Sum_probs=182.2
Q ss_pred eccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc-
Q 011573 192 VFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV- 270 (482)
Q Consensus 192 ~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~- 270 (482)
..-+-.+|++|.+.++++.++...|..++++++.|+++|+..|.|+|||||||||||.||+|+||+.|.+|+.+.-..+
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELl 582 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELL 582 (802)
T ss_pred eecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHH
Confidence 3345589999999999999999999999999999999999999999999999999999999999999999999865554
Q ss_pred -----cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHh
Q 011573 271 -----KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLN 343 (482)
Q Consensus 271 -----~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 343 (482)
+++..++.+|..+. .||||||||||++. .+|. .+....+.+.+++||.
T Consensus 583 NkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~---p~R~----------------------~~~s~~s~RvvNqLLt 637 (802)
T KOG0733|consen 583 NKYVGESERAVRQVFQRARASAPCVIFFDEIDALV---PRRS----------------------DEGSSVSSRVVNQLLT 637 (802)
T ss_pred HHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcC---cccC----------------------CCCchhHHHHHHHHHH
Confidence 56778999999875 79999999999975 3442 1234557789999999
Q ss_pred hhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccC-----CCcHHHHHHHhcCC
Q 011573 344 FIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIES-----HNLFDKIGELLGEA 418 (482)
Q Consensus 344 ~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~-----~~~~~~i~~l~~~~ 418 (482)
.|||+... .++.||++||+|+.+|||++||||||..+++++|+.++|..|++....... ...+++|+...+-.
T Consensus 638 ElDGl~~R--~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~ 715 (802)
T KOG0733|consen 638 ELDGLEER--RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCE 715 (802)
T ss_pred Hhcccccc--cceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhccccc
Confidence 99999665 459999999999999999999999999999999999999999999987422 23345555554446
Q ss_pred CCCHHHHHHHhcc
Q 011573 419 KMTPADVAEHLMP 431 (482)
Q Consensus 419 ~~s~adi~~~l~~ 431 (482)
|||+|||+.++.+
T Consensus 716 gftGADLaaLvre 728 (802)
T KOG0733|consen 716 GFTGADLAALVRE 728 (802)
T ss_pred CCchhhHHHHHHH
Confidence 9999999977664
No 7
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-36 Score=319.47 Aligned_cols=233 Identities=26% Similarity=0.377 Sum_probs=190.1
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc----
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV---- 270 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~---- 270 (482)
.+.+|.+|+|-++.|++| ..+..|+++|+.|.++|...|||+||+||||||||.||+|+|++.|.||+.++-++.
T Consensus 306 t~V~FkDVAG~deAK~El-~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEEL-MEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHH-HHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 348899999999999999 567799999999999999999999999999999999999999999999999988875
Q ss_pred --cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 271 --KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 271 --~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
...+.++.+|..+. .||||+|||||+. |.++... ...+.+.....|+++||..||
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~----~~~r~G~-----------------~~~~~~~e~e~tlnQll~emD 443 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAV----GRKRGGK-----------------GTGGGQDEREQTLNQLLVEMD 443 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccc----ccccccc-----------------ccCCCChHHHHHHHHHHHHhc
Confidence 34788999999875 7999999999995 3333100 011234556789999999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCC-cHHHHHHHhc-CCCCCHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHN-LFDKIGELLG-EAKMTPAD 424 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~-~~~~i~~l~~-~~~~s~ad 424 (482)
|+.+. .++|++++||+++-||+||+||||||++|.++.|+...|.+|++.++...... ...++..++. +.|||+||
T Consensus 444 gf~~~--~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gad 521 (774)
T KOG0731|consen 444 GFETS--KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGAD 521 (774)
T ss_pred CCcCC--CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHH
Confidence 99765 56999999999999999999999999999999999999999999999865442 3344555555 56999999
Q ss_pred HHHHhcccC----CCCCHHHHHHHHHHHHHH
Q 011573 425 VAEHLMPKT----FPADVEFSLRSLNQALEL 451 (482)
Q Consensus 425 i~~~l~~~~----~~~~~~~~~~~l~~al~~ 451 (482)
|+++|.+++ ..........++..++++
T Consensus 522 l~n~~neaa~~a~r~~~~~i~~~~~~~a~~R 552 (774)
T KOG0731|consen 522 LANLCNEAALLAARKGLREIGTKDLEYAIER 552 (774)
T ss_pred HHhhhhHHHHHHHHhccCccchhhHHHHHHH
Confidence 998887632 222334445555566653
No 8
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-35 Score=283.71 Aligned_cols=213 Identities=26% Similarity=0.370 Sum_probs=176.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc----
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV---- 270 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~---- 270 (482)
+..+|.++.|.+.+.++|.+.+..++.+|++|...|+.+|.|++|||+||||||.||+|+||.....|..+--+.+
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQky 259 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 259 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 4478999999999999999999999999999999999999999999999999999999999999988887765554
Q ss_pred -c-ChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 271 -K-DNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 271 -~-~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
. ...-++++|.-+ ..|||+||||||++ |..+ .| ..+++...-++|+-.|||.+|
T Consensus 260 lGdGpklvRqlF~vA~e~apSIvFiDEIdAi----GtKR--yd----------------s~SggerEiQrtmLELLNQld 317 (440)
T KOG0726|consen 260 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAI----GTKR--YD----------------SNSGGEREIQRTMLELLNQLD 317 (440)
T ss_pred hccchHHHHHHHHHHHhcCCceEEeehhhhh----cccc--cc----------------CCCccHHHHHHHHHHHHHhcc
Confidence 3 344567787765 48999999999995 3332 11 123345567889999999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADV 425 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi 425 (482)
|+.+ .+.+-|||+||+++.|||||+||||+|++|+|+.|+...++.||..+-+.........++.++. +..+|+|||
T Consensus 318 GFds--rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdI 395 (440)
T KOG0726|consen 318 GFDS--RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADI 395 (440)
T ss_pred Cccc--cCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccH
Confidence 9976 4668999999999999999999999999999999999999999987766543333334455554 568999999
Q ss_pred HHHhcc
Q 011573 426 AEHLMP 431 (482)
Q Consensus 426 ~~~l~~ 431 (482)
...|.+
T Consensus 396 kAictE 401 (440)
T KOG0726|consen 396 KAICTE 401 (440)
T ss_pred HHHHHH
Confidence 988875
No 9
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=7.8e-34 Score=293.52 Aligned_cols=238 Identities=22% Similarity=0.315 Sum_probs=190.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc---
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV--- 270 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~--- 270 (482)
.+..+|++|+|.+.+|++|.+.+..++.+++.|.+.|+++++|+|||||||||||++++++|++++.+++.+..+.+
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k 218 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK 218 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence 35588999999999999999999999999999999999999999999999999999999999999999998876554
Q ss_pred ---cChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhh
Q 011573 271 ---KDNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFI 345 (482)
Q Consensus 271 ---~~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 345 (482)
.+...++.+|..+ ..||||||||||+++. .|.. ...+.+......+..||+.+
T Consensus 219 ~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~---~r~~-------------------~~~~~d~~~~r~l~~LL~~l 276 (398)
T PTZ00454 219 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT---KRFD-------------------AQTGADREVQRILLELLNQM 276 (398)
T ss_pred hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcc---cccc-------------------ccCCccHHHHHHHHHHHHHh
Confidence 2345677787665 4799999999999752 2210 00111233457889999999
Q ss_pred cccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHH
Q 011573 346 DGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPAD 424 (482)
Q Consensus 346 dg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~ad 424 (482)
|++... .+++||+|||+++.||||++||||||.+|+|++|+.++|..|++.++.........++..++. ..||||||
T Consensus 277 d~~~~~--~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaD 354 (398)
T PTZ00454 277 DGFDQT--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAAD 354 (398)
T ss_pred hccCCC--CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHH
Confidence 998654 458999999999999999999999999999999999999999999987544332234455555 45999999
Q ss_pred HHHHhcccC----CCCCHHHHHHHHHHHHHHHHHH
Q 011573 425 VAEHLMPKT----FPADVEFSLRSLNQALELAKEE 455 (482)
Q Consensus 425 i~~~l~~~~----~~~~~~~~~~~l~~al~~~~~~ 455 (482)
|..+|..+. .......+.+++.+|+++...+
T Consensus 355 I~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 355 IAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhc
Confidence 998887632 2233466778888888876543
No 10
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-34 Score=268.04 Aligned_cols=213 Identities=25% Similarity=0.352 Sum_probs=178.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc----
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV---- 270 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~---- 270 (482)
+..++.++.|.+-+|++|.+.+..++...+.|++.|+.||||+|||||||||||+|++|+|++....++.+.-+..
T Consensus 150 pdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqky 229 (408)
T KOG0727|consen 150 PDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 229 (408)
T ss_pred CCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHH
Confidence 3378999999999999999999999999999999999999999999999999999999999999999999877764
Q ss_pred --cChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 271 --KDNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 271 --~~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
+...-++.+|.-+ +.|+||||||||++. ..|- ....+.+...++.+-.|||.||
T Consensus 230 lgegprmvrdvfrlakenapsiifideidaia---tkrf-------------------daqtgadrevqril~ellnqmd 287 (408)
T KOG0727|consen 230 LGEGPRMVRDVFRLAKENAPSIIFIDEIDAIA---TKRF-------------------DAQTGADREVQRILIELLNQMD 287 (408)
T ss_pred hccCcHHHHHHHHHHhccCCcEEEeehhhhHh---hhhc-------------------cccccccHHHHHHHHHHHHhcc
Confidence 3445677787655 589999999999974 2221 1233455677889999999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADV 425 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi 425 (482)
|+... -++-+||+||+.+.|||||+||||+|++|+||+|+..+++-++...-+..+.....+++.+.. ....|+|||
T Consensus 288 gfdq~--~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi 365 (408)
T KOG0727|consen 288 GFDQT--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADI 365 (408)
T ss_pred CcCcc--cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhH
Confidence 99654 568999999999999999999999999999999999999988888766554444444555544 468999999
Q ss_pred HHHhcc
Q 011573 426 AEHLMP 431 (482)
Q Consensus 426 ~~~l~~ 431 (482)
...|.+
T Consensus 366 ~aicqe 371 (408)
T KOG0727|consen 366 NAICQE 371 (408)
T ss_pred HHHHHH
Confidence 988774
No 11
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-34 Score=298.93 Aligned_cols=212 Identities=22% Similarity=0.320 Sum_probs=173.4
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc---
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV--- 270 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~--- 270 (482)
-+..+|++|.|.+++|..|++-|..++++++.|.. |...+-|+|||||||||||.+|+|+|.++.+.|..+.-.++
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 34588999999999999999999999999998874 56667899999999999999999999999999998865554
Q ss_pred ---cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhh
Q 011573 271 ---KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFI 345 (482)
Q Consensus 271 ---~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 345 (482)
+++.++|++|.+++ +|||||+||+|.+.+..|+.. +..+...+.+|+||..|
T Consensus 745 YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sG-----------------------DSGGVMDRVVSQLLAEL 801 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSG-----------------------DSGGVMDRVVSQLLAEL 801 (953)
T ss_pred HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCC-----------------------CccccHHHHHHHHHHHh
Confidence 68899999999985 799999999999876555432 13345678999999999
Q ss_pred cccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCC-HHHHHHHHHHhccc---cCCCcHHHHHHHhcCCCCC
Q 011573 346 DGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCS-YEAFKVLAKNYLNI---ESHNLFDKIGELLGEAKMT 421 (482)
Q Consensus 346 dg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~-~~~~~~l~~~~l~~---~~~~~~~~i~~l~~~~~~s 421 (482)
||+.......++||++||+|+.|||||+||||||+-++++.|. .+.+..+++..-.. +......+|+..++ .+||
T Consensus 802 Dgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp-~~~T 880 (953)
T KOG0736|consen 802 DGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCP-PNMT 880 (953)
T ss_pred hcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCC-cCCc
Confidence 9998655677999999999999999999999999999999994 55566666654332 33334444444443 4899
Q ss_pred HHHHHHHhc
Q 011573 422 PADVAEHLM 430 (482)
Q Consensus 422 ~adi~~~l~ 430 (482)
+||+-.+|-
T Consensus 881 GADlYsLCS 889 (953)
T KOG0736|consen 881 GADLYSLCS 889 (953)
T ss_pred hhHHHHHHH
Confidence 999986665
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-34 Score=268.32 Aligned_cols=213 Identities=26% Similarity=0.357 Sum_probs=178.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc----
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV---- 270 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~---- 270 (482)
+-++++-+.|.+.+.++|.+.+..+.++|+.|..+|++-|.|+|||||||||||.||+|+|.+..+.++.++-+.+
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 4477889999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred --cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 271 --KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 271 --~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
+...-++.+|..+. .|||||+||||.+ |..+.. .+.++++..++|+-.|||.+|
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsi----gs~r~e------------------~~~ggdsevqrtmlellnqld 279 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSI----GSSRVE------------------SGSGGDSEVQRTMLELLNQLD 279 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeeccccc----cccccc------------------CCCCccHHHHHHHHHHHHhcc
Confidence 34455788887764 8999999999995 333210 122345567899999999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhcC-CCCCHHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLGE-AKMTPADV 425 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~~-~~~s~adi 425 (482)
|+... .++-+||+||+.+-|||||+||||+|++|+||+|+.++|..|++.+....+....-.+..+++. .|.|+|++
T Consensus 280 gfeat--knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaev 357 (404)
T KOG0728|consen 280 GFEAT--KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEV 357 (404)
T ss_pred ccccc--cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchh
Confidence 99764 5688999999999999999999999999999999999999999988665443222334444543 49999999
Q ss_pred HHHhcc
Q 011573 426 AEHLMP 431 (482)
Q Consensus 426 ~~~l~~ 431 (482)
...|.+
T Consensus 358 k~vcte 363 (404)
T KOG0728|consen 358 KGVCTE 363 (404)
T ss_pred hhhhhh
Confidence 998886
No 13
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=265.99 Aligned_cols=239 Identities=22% Similarity=0.310 Sum_probs=188.6
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc--
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV-- 270 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~-- 270 (482)
-++..+++++.|.+.+.+++++.+..++.+++.|.++|+.+|+|+|+|||||||||.+++|.|...+..|..+--..+
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 344578999999999999999999999999999999999999999999999999999999999999887766543333
Q ss_pred ---cC-hHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhh
Q 011573 271 ---KD-NTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNF 344 (482)
Q Consensus 271 ---~~-~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 344 (482)
++ ..-++..|.-+ ..|+||||||+|++ |..+.. +...++...++|+-.|||.
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAI----GtKRfD------------------Sek~GDREVQRTMLELLNQ 301 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAI----GTKRFD------------------SEKAGDREVQRTMLELLNQ 301 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhh----cccccc------------------ccccccHHHHHHHHHHHHh
Confidence 23 33456666554 58999999999995 444311 1122456678999999999
Q ss_pred hcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHH
Q 011573 345 IDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPA 423 (482)
Q Consensus 345 ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~a 423 (482)
+||+.+. +.+-+|++||+.+-|||||+|.||+|++|+||.|+.++|..|++.+....+......++.++. +.+|.+|
T Consensus 302 LDGFss~--~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGA 379 (424)
T KOG0652|consen 302 LDGFSSD--DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGA 379 (424)
T ss_pred hcCCCCc--cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCch
Confidence 9999764 558899999999999999999999999999999999999999998876544433333445555 3499999
Q ss_pred HHHHHhcccC----CCCCHHHHHHHHHHHHHHHHHH
Q 011573 424 DVAEHLMPKT----FPADVEFSLRSLNQALELAKEE 455 (482)
Q Consensus 424 di~~~l~~~~----~~~~~~~~~~~l~~al~~~~~~ 455 (482)
+....|.++. ..+..+...+++++++.....+
T Consensus 380 QcKAVcVEAGMiALRr~atev~heDfmegI~eVqak 415 (424)
T KOG0652|consen 380 QCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQAK 415 (424)
T ss_pred hheeeehhhhHHHHhcccccccHHHHHHHHHHHHHh
Confidence 9998887632 3445566677777776655443
No 14
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-33 Score=275.03 Aligned_cols=210 Identities=26% Similarity=0.377 Sum_probs=172.5
Q ss_pred cCC-CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc--
Q 011573 194 EHP-ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV-- 270 (482)
Q Consensus 194 ~~p-~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~-- 270 (482)
.+| ..|++|+|..+.|+-|.+.+..++.-|++|+.+-.|| +|+|++||||||||+||+|+|.+++..|+.++-+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 344 7899999999999999999999999999999998888 799999999999999999999999999999988877
Q ss_pred ---cChHHHHHHHHh-c--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhh
Q 011573 271 ---KDNTELRKLLIE-T--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNF 344 (482)
Q Consensus 271 ---~~~~~L~~l~~~-~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 344 (482)
+..++|.++|.+ + ..|++|||||||.+ +++|. .++++..+++.-++||..
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDsl---cs~RG---------------------~s~EHEaSRRvKsELLvQ 339 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSL---CSQRG---------------------GSSEHEASRRVKSELLVQ 339 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHH---HhcCC---------------------CccchhHHHHHHHHHHHH
Confidence 233455555444 4 38999999999997 45553 223456688999999999
Q ss_pred hcccccCCCCc---eEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCC
Q 011573 345 IDGLWSACGGE---RLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKM 420 (482)
Q Consensus 345 ldg~~s~~~~~---~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~ 420 (482)
|||+.... ++ ++|+++||.|+.||.||+| ||...|++|+|+.++|+.|++..|........-.++.+++ ..||
T Consensus 340 mDG~~~t~-e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGy 416 (491)
T KOG0738|consen 340 MDGVQGTL-ENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGY 416 (491)
T ss_pred hhcccccc-ccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCC
Confidence 99986532 33 5677899999999999999 9999999999999999999999997543322223334444 3499
Q ss_pred CHHHHHHHhcc
Q 011573 421 TPADVAEHLMP 431 (482)
Q Consensus 421 s~adi~~~l~~ 431 (482)
|++||..+|..
T Consensus 417 SGaDI~nvCre 427 (491)
T KOG0738|consen 417 SGADITNVCRE 427 (491)
T ss_pred ChHHHHHHHHH
Confidence 99999988874
No 15
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-33 Score=293.28 Aligned_cols=232 Identities=25% Similarity=0.356 Sum_probs=188.0
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc----
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV---- 270 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~---- 270 (482)
...+|.+++|.++.|+++ ..+..|+++|..|.++|...|+|+||+||||||||.||+|+|++.+.|++.++-++.
T Consensus 145 ~~v~F~DVAG~dEakeel-~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEEL-SELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHH-HHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 447899999999999999 567799999999999999999999999999999999999999999999999988875
Q ss_pred --cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 271 --KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 271 --~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
...+.+|.+|.++. .||||||||||+. |+.+... .++.+.....|+++||..||
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAv----Gr~Rg~g------------------~GggnderEQTLNQlLvEmD 281 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAV----GRQRGAG------------------LGGGNDEREQTLNQLLVEMD 281 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhc----ccccCCC------------------CCCCchHHHHHHHHHHhhhc
Confidence 36789999999986 5999999999994 5544111 12234456689999999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADV 425 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi 425 (482)
|+.++ +++|+|++||+|+-|||||+||||||++|.++.|+...|.+|++-++.........++..++. +.|||+||+
T Consensus 282 GF~~~--~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL 359 (596)
T COG0465 282 GFGGN--EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADL 359 (596)
T ss_pred cCCCC--CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchH
Confidence 99754 569999999999999999999999999999999999999999997776544433333444555 459999999
Q ss_pred HHHhcccC-----------CCCCHHHHHHHHHHHHHH
Q 011573 426 AEHLMPKT-----------FPADVEFSLRSLNQALEL 451 (482)
Q Consensus 426 ~~~l~~~~-----------~~~~~~~~~~~l~~al~~ 451 (482)
.+++.+++ ...+.+.+.+.++...++
T Consensus 360 ~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~er 396 (596)
T COG0465 360 ANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPER 396 (596)
T ss_pred hhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCc
Confidence 98875421 223455555555544443
No 16
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=3.7e-32 Score=281.81 Aligned_cols=243 Identities=23% Similarity=0.284 Sum_probs=192.6
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc--
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV-- 270 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~-- 270 (482)
..+..+|++|+|.++++++|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+++|++++.+++.++++.+
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 334578999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred ----cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhh
Q 011573 271 ----KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNF 344 (482)
Q Consensus 271 ----~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 344 (482)
.+...++.+|..+. .||||||||||.++. .+... ..........++..||+.
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~---~r~~~-------------------~~~~~~~~~~~l~~lL~~ 261 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAA---KRTDS-------------------GTSGDREVQRTLMQLLAE 261 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhc---ccccC-------------------CCCccHHHHHHHHHHHHh
Confidence 23456777887654 689999999999752 22100 001122345678889999
Q ss_pred hcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHH
Q 011573 345 IDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPA 423 (482)
Q Consensus 345 ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~a 423 (482)
+|++... .+++||+|||+++.||+||+||||||..|+|++|+.++|.+|++.++..........+..++. ..|||++
T Consensus 262 ld~~~~~--~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sga 339 (389)
T PRK03992 262 MDGFDPR--GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGA 339 (389)
T ss_pred ccccCCC--CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHH
Confidence 9998543 468999999999999999999999999999999999999999999987543322223444554 4599999
Q ss_pred HHHHHhcccC----CCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011573 424 DVAEHLMPKT----FPADVEFSLRSLNQALELAKEEARRV 459 (482)
Q Consensus 424 di~~~l~~~~----~~~~~~~~~~~l~~al~~~~~~~~~~ 459 (482)
||..+|..+. .......+.+++.+|+++.+.....+
T Consensus 340 dl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 340 DLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcccccc
Confidence 9998877532 22334567888899998877655544
No 17
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-32 Score=258.43 Aligned_cols=238 Identities=21% Similarity=0.262 Sum_probs=189.9
Q ss_pred eccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc-
Q 011573 192 VFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV- 270 (482)
Q Consensus 192 ~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~- 270 (482)
.-.+-.+++++.|-.++.+.|.+.+..++-+|+.|.++|+.+|+|+|||||||||||..|+|+||..+..++.+=-+.+
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 3344589999999999999999999999999999999999999999999999999999999999999999998755554
Q ss_pred -----cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHh
Q 011573 271 -----KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLN 343 (482)
Q Consensus 271 -----~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 343 (482)
+...-++++|..+. .-||||+||||++ .|.|- ..+.++++..++|+-.|+|
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidai---ggarf-------------------ddg~ggdnevqrtmleli~ 306 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAI---GGARF-------------------DDGAGGDNEVQRTMLELIN 306 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccc---cCccc-------------------cCCCCCcHHHHHHHHHHHH
Confidence 34456788888765 5699999999996 34443 1123455667899999999
Q ss_pred hhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcccc---CCCcHHHHHHHhcCCCC
Q 011573 344 FIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIE---SHNLFDKIGELLGEAKM 420 (482)
Q Consensus 344 ~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~---~~~~~~~i~~l~~~~~~ 420 (482)
.+||+. ..+++-++|+||+|+.|||||+||||+|++++|++|+.+.|..|++.+-... ....++-+++|++ +-
T Consensus 307 qldgfd--prgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcp--ns 382 (435)
T KOG0729|consen 307 QLDGFD--PRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCP--NS 382 (435)
T ss_pred hccCCC--CCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCC--CC
Confidence 999995 4577889999999999999999999999999999999999999998775533 3345666777776 77
Q ss_pred CHHHHHHHhcccCC----CCCHHHHHHHHHHHHHHHHHH
Q 011573 421 TPADVAEHLMPKTF----PADVEFSLRSLNQALELAKEE 455 (482)
Q Consensus 421 s~adi~~~l~~~~~----~~~~~~~~~~l~~al~~~~~~ 455 (482)
|+|+|...|.++.. .......-.++++|+.+..+.
T Consensus 383 tgaeirsvcteagmfairarrk~atekdfl~av~kvvkg 421 (435)
T KOG0729|consen 383 TGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVKG 421 (435)
T ss_pred cchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 89999998886321 111222234566666655443
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.98 E-value=1.5e-32 Score=258.72 Aligned_cols=205 Identities=20% Similarity=0.310 Sum_probs=172.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc----
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV---- 270 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~---- 270 (482)
...+|++|+|.++.|+.. ..|..|+.+|+.|..|. |+.+|||||||||||++|+|+|++.+.|++.+..+++
T Consensus 116 ~~it~ddViGqEeAK~kc-rli~~yLenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 116 SDITLDDVIGQEEAKRKC-RLIMEYLENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred ccccHhhhhchHHHHHHH-HHHHHHhhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 346899999999999987 67889999999998774 7899999999999999999999999999999988876
Q ss_pred --cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 271 --KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 271 --~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
.....+++++..+. .|||+||||+|++. ..+|- ..-.++..-.++.||..||
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAia--LdRry----------------------QelRGDVsEiVNALLTelD 247 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIA--LDRRY----------------------QELRGDVSEIVNALLTELD 247 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhh--hhhhH----------------------HHhcccHHHHHHHHHHhcc
Confidence 23457889998875 79999999999974 22221 1123445668899999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADV 425 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi 425 (482)
|+.+ +++++.|++||+|+.||||++. ||...|+|.+|+.++|..|++.|....+.+....+..++. +.|||+.||
T Consensus 248 gi~e--neGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdi 323 (368)
T COG1223 248 GIKE--NEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDI 323 (368)
T ss_pred Cccc--CCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhH
Confidence 9975 4669999999999999999999 9999999999999999999999988766555555656665 459999999
Q ss_pred HHHhcc
Q 011573 426 AEHLMP 431 (482)
Q Consensus 426 ~~~l~~ 431 (482)
.+-+++
T Consensus 324 kekvlK 329 (368)
T COG1223 324 KEKVLK 329 (368)
T ss_pred HHHHHH
Confidence 998875
No 19
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.98 E-value=3e-32 Score=287.52 Aligned_cols=231 Identities=22% Similarity=0.264 Sum_probs=181.9
Q ss_pred CCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc-----
Q 011573 196 PATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV----- 270 (482)
Q Consensus 196 p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~----- 270 (482)
+.+|++|+|.+.+|+.+.+....|. ..+.+.|+++++|+|||||||||||++|+|+|++++.+++.++++.+
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~---~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFS---KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhh---HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 4679999999999998877665553 34567899999999999999999999999999999999999998764
Q ss_pred -cChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcc
Q 011573 271 -KDNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDG 347 (482)
Q Consensus 271 -~~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg 347 (482)
.++..++++|..+ ..||||+|||||.++. .+.. .+..+.....+..||..|+.
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~---~~~~---------------------~~d~~~~~rvl~~lL~~l~~ 356 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFS---NSES---------------------KGDSGTTNRVLATFITWLSE 356 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhc---cccC---------------------CCCchHHHHHHHHHHHHHhc
Confidence 2467889998754 4899999999999763 1110 01223356778889998886
Q ss_pred cccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCC--cHHHHHHHhc-CCCCCHHH
Q 011573 348 LWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHN--LFDKIGELLG-EAKMTPAD 424 (482)
Q Consensus 348 ~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~--~~~~i~~l~~-~~~~s~ad 424 (482)
. ..+++||+|||+++.||||++||||||..|+++.|+.++|..|++.++...... ...++..+++ +.|||+||
T Consensus 357 ~----~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAd 432 (489)
T CHL00195 357 K----KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAE 432 (489)
T ss_pred C----CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHH
Confidence 3 345899999999999999999999999999999999999999999999764322 1234566666 45999999
Q ss_pred HHHHhcccC---CCCCHHHHHHHHHHHHHHHHHHHh
Q 011573 425 VAEHLMPKT---FPADVEFSLRSLNQALELAKEEAR 457 (482)
Q Consensus 425 i~~~l~~~~---~~~~~~~~~~~l~~al~~~~~~~~ 457 (482)
|...+..+. ..+......++++++++...+...
T Consensus 433 I~~lv~eA~~~A~~~~~~lt~~dl~~a~~~~~Pls~ 468 (489)
T CHL00195 433 IEQSIIEAMYIAFYEKREFTTDDILLALKQFIPLAQ 468 (489)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCcc
Confidence 998776532 223345678888888888777543
No 20
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.98 E-value=8.1e-32 Score=288.02 Aligned_cols=235 Identities=23% Similarity=0.358 Sum_probs=186.4
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc---
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV--- 270 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~--- 270 (482)
.+..+|++++|.+++|+++.+ +..|+++++.|.+.|.++++|+|||||||||||++++++|++++.+++.++.+.+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 345889999999999999875 5667999999999999999999999999999999999999999999999987764
Q ss_pred ---cChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhh
Q 011573 271 ---KDNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFI 345 (482)
Q Consensus 271 ---~~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 345 (482)
.+...++.+|..+ ..||||||||||.+.. .+... ..+.......+++.||+.|
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~---~r~~~-------------------~~~~~~~~~~~~~~lL~~~ 185 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR---QRGAG-------------------LGGGNDEREQTLNQLLVEM 185 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhh---ccccC-------------------cCCccHHHHHHHHHHHhhh
Confidence 2456788999876 4789999999999752 22100 0011223457889999999
Q ss_pred cccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHH
Q 011573 346 DGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPAD 424 (482)
Q Consensus 346 dg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~ad 424 (482)
|++.+. ++++||+|||+++.|||||+||||||.+|++++|+.++|.+|++.++.........++..++. ..|||++|
T Consensus 186 d~~~~~--~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgad 263 (495)
T TIGR01241 186 DGFGTN--TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGAD 263 (495)
T ss_pred ccccCC--CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHH
Confidence 998654 458999999999999999999999999999999999999999999987654333334556665 45999999
Q ss_pred HHHHhcccC----CCCCHHHHHHHHHHHHHHHH
Q 011573 425 VAEHLMPKT----FPADVEFSLRSLNQALELAK 453 (482)
Q Consensus 425 i~~~l~~~~----~~~~~~~~~~~l~~al~~~~ 453 (482)
|..++..+. .......+.+++..++++..
T Consensus 264 l~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 264 LANLLNEAALLAARKNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 998776421 12233456677777777654
No 21
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.98 E-value=1.3e-31 Score=282.51 Aligned_cols=207 Identities=21% Similarity=0.314 Sum_probs=163.5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCce----------ee
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDL----------YD 264 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i----------~~ 264 (482)
++.+|++|+|.+.++++|.+.+..++.++++|...|+++++|+|||||||||||++++++|++++.++ +.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 45899999999999999999999999999999999999999999999999999999999999997653 22
Q ss_pred cccccc------cChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCccccccccccccc
Q 011573 265 LELTAV------KDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETN 332 (482)
Q Consensus 265 l~l~~~------~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (482)
+....+ .+...++.+|..+. .||||||||||+++. .|.. .....
T Consensus 257 v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~---~R~~---------------------~~s~d 312 (512)
T TIGR03689 257 IKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFR---TRGS---------------------GVSSD 312 (512)
T ss_pred ccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhc---ccCC---------------------Cccch
Confidence 222222 23456777776543 589999999999863 2210 00112
Q ss_pred chHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHH
Q 011573 333 NSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIG 412 (482)
Q Consensus 333 ~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~ 412 (482)
.....+++||+.|||+.+. ++++||+|||+++.|||||+||||||.+|+|++|+.++++.|++.|+...- .+.+++
T Consensus 313 ~e~~il~~LL~~LDgl~~~--~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l-~l~~~l- 388 (512)
T TIGR03689 313 VETTVVPQLLSELDGVESL--DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSL-PLDADL- 388 (512)
T ss_pred HHHHHHHHHHHHhcccccC--CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccC-CchHHH-
Confidence 2356789999999999754 469999999999999999999999999999999999999999999986432 233332
Q ss_pred HHhcCCCCCHHHHHHHhcc
Q 011573 413 ELLGEAKMTPADVAEHLMP 431 (482)
Q Consensus 413 ~l~~~~~~s~adi~~~l~~ 431 (482)
....|++.+++..++..
T Consensus 389 --~~~~g~~~a~~~al~~~ 405 (512)
T TIGR03689 389 --AEFDGDREATAAALIQR 405 (512)
T ss_pred --HHhcCCCHHHHHHHHHH
Confidence 33458888887766543
No 22
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=6.6e-32 Score=281.01 Aligned_cols=239 Identities=23% Similarity=0.306 Sum_probs=187.9
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc--
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV-- 270 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~-- 270 (482)
..++.+|++|+|.++++++|.+.+..++.++++|..+|+.+++|+|||||||||||++|+++|++++.+++.+..+.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 345589999999999999999999999999999999999999999999999999999999999999999998876665
Q ss_pred ----cChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhh
Q 011573 271 ----KDNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNF 344 (482)
Q Consensus 271 ----~~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 344 (482)
.+...++.+|..+ ..||||||||||+++. .|.. ...+.......++..||+.
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~---kR~~-------------------~~sgg~~e~qr~ll~LL~~ 313 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGT---KRYD-------------------ATSGGEKEIQRTMLELLNQ 313 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhc---cCCC-------------------CCCcccHHHHHHHHHHHHH
Confidence 2334577777655 4789999999999752 2210 0011222345678899999
Q ss_pred hcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHH
Q 011573 345 IDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPA 423 (482)
Q Consensus 345 ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~a 423 (482)
+||+... .++.||+|||+++.||||++||||||.+|+|++|+.++|..|++.++..........+..++. ..|+|+|
T Consensus 314 Ldg~~~~--~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgA 391 (438)
T PTZ00361 314 LDGFDSR--GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGA 391 (438)
T ss_pred Hhhhccc--CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHH
Confidence 9998543 458999999999999999999999999999999999999999999986544322223445554 4599999
Q ss_pred HHHHHhcccC----CCCCHHHHHHHHHHHHHHHHHH
Q 011573 424 DVAEHLMPKT----FPADVEFSLRSLNQALELAKEE 455 (482)
Q Consensus 424 di~~~l~~~~----~~~~~~~~~~~l~~al~~~~~~ 455 (482)
||..+|..+. ......++.+++.+|+++....
T Consensus 392 dI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 392 DIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhh
Confidence 9998876532 1223456677777877776443
No 23
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=1.3e-31 Score=298.83 Aligned_cols=210 Identities=23% Similarity=0.316 Sum_probs=176.7
Q ss_pred CCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc-----
Q 011573 196 PATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV----- 270 (482)
Q Consensus 196 p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~----- 270 (482)
..+|++++|.+.+|+.|.+.+..++..++.|.+.|+.+++|+|||||||||||++|+|+|++++.+++.++.+.+
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~v 528 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWV 528 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhccc
Confidence 468999999999999999999999999999999999999999999999999999999999999999999987664
Q ss_pred -cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcc
Q 011573 271 -KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDG 347 (482)
Q Consensus 271 -~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg 347 (482)
.++..++.+|..+. .||||||||||.+++ .|.. ..........+++||..|||
T Consensus 529 Gese~~i~~~f~~A~~~~p~iifiDEid~l~~---~r~~---------------------~~~~~~~~~~~~~lL~~ldg 584 (733)
T TIGR01243 529 GESEKAIREIFRKARQAAPAIIFFDEIDAIAP---ARGA---------------------RFDTSVTDRIVNQLLTEMDG 584 (733)
T ss_pred CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhc---cCCC---------------------CCCccHHHHHHHHHHHHhhc
Confidence 35667999998764 789999999999863 2210 00122346788999999999
Q ss_pred cccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHHH
Q 011573 348 LWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADVA 426 (482)
Q Consensus 348 ~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi~ 426 (482)
+... .+++||+|||+++.||||++||||||.+|++++|+.++|.+||+.++...+.....++..+++ ..|||+|||.
T Consensus 585 ~~~~--~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~ 662 (733)
T TIGR01243 585 IQEL--SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIE 662 (733)
T ss_pred ccCC--CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHH
Confidence 8653 569999999999999999999999999999999999999999998887554433334555655 4499999999
Q ss_pred HHhcc
Q 011573 427 EHLMP 431 (482)
Q Consensus 427 ~~l~~ 431 (482)
.+|..
T Consensus 663 ~~~~~ 667 (733)
T TIGR01243 663 AVCRE 667 (733)
T ss_pred HHHHH
Confidence 77653
No 24
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=1.2e-30 Score=283.30 Aligned_cols=233 Identities=23% Similarity=0.346 Sum_probs=185.4
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc---
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK--- 271 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~--- 271 (482)
...+|++|+|.++.|+++ ..+..|++.++.|...|..+++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 178 ~~~~f~dv~G~~~~k~~l-~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEF-EEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHH-HHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 457899999999999887 5677889999999999999999999999999999999999999999999999887652
Q ss_pred ---ChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 272 ---DNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 272 ---~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
....++.+|..+. .||||||||||++.. .|.. . ..+.+.....++..||..+|
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~---~r~~-~------------------~~~~~~e~~~~L~~LL~~~d 314 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGR---QRGA-G------------------IGGGNDEREQTLNQLLTEMD 314 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhh---cccC-C------------------CCCCcHHHHHHHHHHHhhhc
Confidence 3456888888764 789999999999742 2210 0 01122334678999999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhcC-CCCCHHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLGE-AKMTPADV 425 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~~-~~~s~adi 425 (482)
|+... .+++||+|||+++.|||||+||||||.+|.++.|+.++|..|++.++..........+..++.. .|||++||
T Consensus 315 g~~~~--~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL 392 (638)
T CHL00176 315 GFKGN--KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADL 392 (638)
T ss_pred cccCC--CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHH
Confidence 98654 4589999999999999999999999999999999999999999999876443334455666664 59999999
Q ss_pred HHHhcccC----CCCCHHHHHHHHHHHHHHH
Q 011573 426 AEHLMPKT----FPADVEFSLRSLNQALELA 452 (482)
Q Consensus 426 ~~~l~~~~----~~~~~~~~~~~l~~al~~~ 452 (482)
..++..++ .......+.+++..++.+.
T Consensus 393 ~~lvneAal~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 393 ANLLNEAAILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 97776421 2233345666777777655
No 25
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-30 Score=273.34 Aligned_cols=215 Identities=20% Similarity=0.245 Sum_probs=181.7
Q ss_pred eeeeccCC--CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 189 VHVVFEHP--ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 189 ~~~~~~~p--~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
+.+.+..+ ..|++++|..++|+.+.+.+..+.+.+..|.+.+++.+.|+|||||||||||.||-|+|..+++.++.+.
T Consensus 654 R~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvK 733 (952)
T KOG0735|consen 654 RGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVK 733 (952)
T ss_pred hhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEec
Confidence 34444444 4699999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccc------cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHH
Q 011573 267 LTAV------KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTL 338 (482)
Q Consensus 267 l~~~------~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 338 (482)
-.++ .++..+|.+|..+. .|||||+||+|.+.+ +|. .+..+...+.+
T Consensus 734 GPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAP---kRG----------------------hDsTGVTDRVV 788 (952)
T KOG0735|consen 734 GPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAP---KRG----------------------HDSTGVTDRVV 788 (952)
T ss_pred CHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCc---ccC----------------------CCCCCchHHHH
Confidence 6654 46788999999875 799999999999754 332 11334566889
Q ss_pred HHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-C
Q 011573 339 SGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-E 417 (482)
Q Consensus 339 s~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~ 417 (482)
++||..|||...- .+++|+++|.+|+.|||||+||||+|..|+-+.|+..+|..|++-.-.........+++.++. +
T Consensus 789 NQlLTelDG~Egl--~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T 866 (952)
T KOG0735|consen 789 NQLLTELDGAEGL--DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKT 866 (952)
T ss_pred HHHHHhhcccccc--ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhc
Confidence 9999999998664 459999999999999999999999999999999999999999987765444444445556665 4
Q ss_pred CCCCHHHHHHHhc
Q 011573 418 AKMTPADVAEHLM 430 (482)
Q Consensus 418 ~~~s~adi~~~l~ 430 (482)
.|||+||++.+|-
T Consensus 867 ~g~tgADlq~ll~ 879 (952)
T KOG0735|consen 867 DGFTGADLQSLLY 879 (952)
T ss_pred CCCchhhHHHHHH
Confidence 5999999998877
No 26
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-31 Score=255.28 Aligned_cols=203 Identities=26% Similarity=0.357 Sum_probs=175.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc----
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV---- 270 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~---- 270 (482)
+...|++|+|.+..|+.+.+.+..+++.|+.|..-.+|| ||+|||||||||||.||+|+|.+.+-.++.++-+++
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKW 206 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 206 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHH
Confidence 337889999999999999999999999999999877787 899999999999999999999999999999988876
Q ss_pred --cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 271 --KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 271 --~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
+++.-+++||.-++ .||||||||||.+ +|.|. .+.+..+++.-..||-.|.
T Consensus 207 mGESEkLVknLFemARe~kPSIIFiDEiDsl---cg~r~----------------------enEseasRRIKTEfLVQMq 261 (439)
T KOG0739|consen 207 MGESEKLVKNLFEMARENKPSIIFIDEIDSL---CGSRS----------------------ENESEASRRIKTEFLVQMQ 261 (439)
T ss_pred hccHHHHHHHHHHHHHhcCCcEEEeehhhhh---ccCCC----------------------CCchHHHHHHHHHHHHhhh
Confidence 34555778887764 7999999999975 46653 2233456788899999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHH-HHHHHhc-CCCCCHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFD-KIGELLG-EAKMTPAD 424 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~-~i~~l~~-~~~~s~ad 424 (482)
|+-.. .++++|+++||-|+.||.|++| ||+..|++|+|...+|..+++.+++..+|.+.+ ++..|.. +.|||++|
T Consensus 262 GVG~d-~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsD 338 (439)
T KOG0739|consen 262 GVGND-NDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSD 338 (439)
T ss_pred ccccC-CCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCc
Confidence 98543 4568999999999999999999 999999999999999999999999998887754 5677777 45999999
Q ss_pred HH
Q 011573 425 VA 426 (482)
Q Consensus 425 i~ 426 (482)
|.
T Consensus 339 is 340 (439)
T KOG0739|consen 339 IS 340 (439)
T ss_pred eE
Confidence 86
No 27
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.9e-30 Score=275.42 Aligned_cols=232 Identities=26% Similarity=0.352 Sum_probs=191.0
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc----
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV---- 270 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~---- 270 (482)
+..+|++++|....|+.+.+.+..++..++.|.+.|+.+++|+|||||||||||++|+|+|++++.+++.++.+++
T Consensus 237 ~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~ 316 (494)
T COG0464 237 EDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKW 316 (494)
T ss_pred CCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccc
Confidence 3488999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred --cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 271 --KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 271 --~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
+++..++.+|..+. .||||||||||.++. .|. ..........+++||..+|
T Consensus 317 vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~---~r~----------------------~~~~~~~~r~~~~lL~~~d 371 (494)
T COG0464 317 VGESEKNIRELFEKARKLAPSIIFIDEIDSLAS---GRG----------------------PSEDGSGRRVVGQLLTELD 371 (494)
T ss_pred cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhc---cCC----------------------CCCchHHHHHHHHHHHHhc
Confidence 46788999999886 799999999999863 221 0111223689999999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCc--HHHHHHHhc-CCCCCHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNL--FDKIGELLG-EAKMTPA 423 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~--~~~i~~l~~-~~~~s~a 423 (482)
|+... .++++|+|||+++.||||++||||||..|+++.|+.++|..+++.++......+ ...+..+++ +.|+|++
T Consensus 372 ~~e~~--~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sga 449 (494)
T COG0464 372 GIEKA--EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGA 449 (494)
T ss_pred CCCcc--CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHH
Confidence 99654 558999999999999999999999999999999999999999999998544432 223445555 4589999
Q ss_pred HHHHHhcccCC----CC-CHHHHHHHHHHHHHHHH
Q 011573 424 DVAEHLMPKTF----PA-DVEFSLRSLNQALELAK 453 (482)
Q Consensus 424 di~~~l~~~~~----~~-~~~~~~~~l~~al~~~~ 453 (482)
||...+..+.. .. .....++++.++++..+
T Consensus 450 di~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~~ 484 (494)
T COG0464 450 DIAALVREAALEALREARRREVTLDDFLDALKKIK 484 (494)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhcC
Confidence 99988876431 11 33566777777777633
No 28
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-30 Score=249.50 Aligned_cols=231 Identities=23% Similarity=0.316 Sum_probs=182.4
Q ss_pred CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc-----
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK----- 271 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~----- 271 (482)
.+|+.+.|.-++..++.+-+..++.++..+.++|+.+|.|+|||||||||||.+++++|..++.+++.+..+.+.
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiG 208 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIG 208 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcc
Confidence 379999999999999999999999999999999999999999999999999999999999999999998888773
Q ss_pred -ChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhccc
Q 011573 272 -DNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGL 348 (482)
Q Consensus 272 -~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 348 (482)
+..-+++.|..+. .|||||+||||+. .|++.+ +....+..-+.||..|||.|||+
T Consensus 209 EsaRlIRemf~yA~~~~pciifmdeiDAi---gGRr~s-------------------e~Ts~dreiqrTLMeLlnqmdgf 266 (388)
T KOG0651|consen 209 ESARLIRDMFRYAREVIPCIIFMDEIDAI---GGRRFS-------------------EGTSSDREIQRTLMELLNQMDGF 266 (388)
T ss_pred cHHHHHHHHHHHHhhhCceEEeehhhhhh---ccEEec-------------------cccchhHHHHHHHHHHHHhhccc
Confidence 3345778888775 6899999999995 355531 12224456788999999999999
Q ss_pred ccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccC-C--CcHHHHHHHhcCCCCCHHHH
Q 011573 349 WSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIES-H--NLFDKIGELLGEAKMTPADV 425 (482)
Q Consensus 349 ~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~-~--~~~~~i~~l~~~~~~s~adi 425 (482)
... ..+-+|||||+|+.|||||+||||+|+.+++|.|+...|..+++.+-...+ | ...+.+.++.+ +|.+||+
T Consensus 267 d~l--~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d--~f~gad~ 342 (388)
T KOG0651|consen 267 DTL--HRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVD--GFNGADL 342 (388)
T ss_pred hhc--ccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHh--ccChHHH
Confidence 664 347899999999999999999999999999999999999988775543211 1 23445555544 8999999
Q ss_pred HHHhcccCCC---CCH-HHHHHHHHHHHHHHH
Q 011573 426 AEHLMPKTFP---ADV-EFSLRSLNQALELAK 453 (482)
Q Consensus 426 ~~~l~~~~~~---~~~-~~~~~~l~~al~~~~ 453 (482)
...|.++..- +.. ..-.+++..++++..
T Consensus 343 rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 343 RNVCTEAGMFAIPEERDEVLHEDFMKLVRKQA 374 (388)
T ss_pred hhhcccccccccchhhHHHhHHHHHHHHHHHH
Confidence 9888764322 222 233355555554433
No 29
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=5.3e-29 Score=256.64 Aligned_cols=235 Identities=22% Similarity=0.270 Sum_probs=178.4
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc-
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK- 271 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~- 271 (482)
..+..+|++++|.++++++|.+.+..++.+++.|..+|+.+++|+|||||||||||++++++|++++.+++.+....+.
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 3455789999999999999999999999999999999999999999999999999999999999999999888765541
Q ss_pred -----ChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhh
Q 011573 272 -----DNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNF 344 (482)
Q Consensus 272 -----~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 344 (482)
....++.+|..+ ..|+||||||||.++. .+.. + ..+.......++..+|+.
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~---~~~~--~-----------------~~~~~~~~~~~l~~ll~~ 252 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAA---KRTD--S-----------------GTSGDREVQRTLMQLLAE 252 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhcc---cccc--C-----------------CCCccHHHHHHHHHHHHH
Confidence 223466666654 4789999999999752 2210 0 011122345678889999
Q ss_pred hcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHH
Q 011573 345 IDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPA 423 (482)
Q Consensus 345 ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~a 423 (482)
+|++... +++.||+|||+++.+|++++||||||..|+|+.|+.++|..|++.++..........+..++. ..|+|++
T Consensus 253 ld~~~~~--~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~ 330 (364)
T TIGR01242 253 LDGFDPR--GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGA 330 (364)
T ss_pred hhCCCCC--CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHH
Confidence 9987433 458999999999999999999999999999999999999999999876543221122344444 3499999
Q ss_pred HHHHHhcccC----CCCCHHHHHHHHHHHHHH
Q 011573 424 DVAEHLMPKT----FPADVEFSLRSLNQALEL 451 (482)
Q Consensus 424 di~~~l~~~~----~~~~~~~~~~~l~~al~~ 451 (482)
||..++..+. ......++.+++.+|+++
T Consensus 331 dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 331 DLKAICTEAGMFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 9998776422 112233455555555543
No 30
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.3e-29 Score=248.67 Aligned_cols=208 Identities=24% Similarity=0.326 Sum_probs=173.7
Q ss_pred CCccccccChHHHHHHHHHHHHHhhCHHHHHHhC-CCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccC---
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIG-RAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKD--- 272 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g-~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~--- 272 (482)
.+|+++.+.+.+++.+.+.+..+++.|++|...+ ..+++|+|||||||||||++|+|+|.+.|.+++.+..+.+.+
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 6799999999999999999999999999997433 357899999999999999999999999999999999998743
Q ss_pred ---hHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcc
Q 011573 273 ---NTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDG 347 (482)
Q Consensus 273 ---~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg 347 (482)
+.-++.+|.-+. .||||||||||.++ +.|+ ..++......-.+|....||
T Consensus 169 gE~eKlv~AvFslAsKl~P~iIFIDEvds~L---~~R~----------------------s~dHEa~a~mK~eFM~~WDG 223 (386)
T KOG0737|consen 169 GEAQKLVKAVFSLASKLQPSIIFIDEVDSFL---GQRR----------------------STDHEATAMMKNEFMALWDG 223 (386)
T ss_pred HHHHHHHHHHHhhhhhcCcceeehhhHHHHH---hhcc----------------------cchHHHHHHHHHHHHHHhcc
Confidence 233455555444 79999999999986 4442 11334456777889999999
Q ss_pred cccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhcC-CCCCHHHHH
Q 011573 348 LWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLGE-AKMTPADVA 426 (482)
Q Consensus 348 ~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~~-~~~s~adi~ 426 (482)
+.+..+..++|.++||+|..||.|++| ||...++++.|+.++|.+|++-+|..+.....-++..+++. .|||+.||.
T Consensus 224 l~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLk 301 (386)
T KOG0737|consen 224 LSSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLK 301 (386)
T ss_pred ccCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHH
Confidence 988766667888899999999999999 99999999999999999999999987765444445555653 499999999
Q ss_pred HHhcc
Q 011573 427 EHLMP 431 (482)
Q Consensus 427 ~~l~~ 431 (482)
++|..
T Consensus 302 elC~~ 306 (386)
T KOG0737|consen 302 ELCRL 306 (386)
T ss_pred HHHHH
Confidence 99985
No 31
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=7.1e-29 Score=247.54 Aligned_cols=166 Identities=21% Similarity=0.227 Sum_probs=132.0
Q ss_pred HHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc------cChHHHHHHHHhcC-------CCeEEEE
Q 011573 225 FYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV------KDNTELRKLLIETS-------SKSIIVI 291 (482)
Q Consensus 225 ~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~------~~~~~L~~l~~~~~-------~~sIl~i 291 (482)
+....|+.+|+|++||||||||||++|+|+|+++|.+++.++.+++ +++..++++|..+. +||||||
T Consensus 139 ~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFI 218 (413)
T PLN00020 139 FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFI 218 (413)
T ss_pred hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEE
Confidence 3445789999999999999999999999999999999999998877 45678999998764 6999999
Q ss_pred eCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhccc--------c--cCCCCceEEEEe
Q 011573 292 EDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGL--------W--SACGGERLIVFT 361 (482)
Q Consensus 292 DdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~--------~--s~~~~~~iiI~T 361 (482)
||||+++ +++.. .......+.....||+.+|+. | ......++||+|
T Consensus 219 DEIDA~~---g~r~~---------------------~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaT 274 (413)
T PLN00020 219 NDLDAGA---GRFGT---------------------TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVT 274 (413)
T ss_pred ehhhhcC---CCCCC---------------------CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEe
Confidence 9999975 34320 011122445568899998863 3 112345889999
Q ss_pred cCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhcC
Q 011573 362 TNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLGE 417 (482)
Q Consensus 362 TN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~~ 417 (482)
||+|+.|||||+||||||..+ ..|+.++|..|++.++...... ..++..++..
T Consensus 275 TNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~ 327 (413)
T PLN00020 275 GNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDT 327 (413)
T ss_pred CCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHc
Confidence 999999999999999999865 5899999999999998765433 5677777764
No 32
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=3.1e-29 Score=285.83 Aligned_cols=202 Identities=16% Similarity=0.129 Sum_probs=149.8
Q ss_pred CHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccC-----------------------------
Q 011573 222 SEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKD----------------------------- 272 (482)
Q Consensus 222 ~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~----------------------------- 272 (482)
++..+.++|..+++|+||+||||||||.||+|+|++.++|++.++++.+-.
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 456778899999999999999999999999999999999999987765421
Q ss_pred --------------------hHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCccccccccccc
Q 011573 273 --------------------NTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERE 330 (482)
Q Consensus 273 --------------------~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (482)
...++.+|..| .+||||+|||||++. .+
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~----~~-------------------------- 1747 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLN----VN-------------------------- 1747 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcC----CC--------------------------
Confidence 11256677766 489999999999963 11
Q ss_pred ccchHHHHHHHHhhhcccccC-CCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCC---C
Q 011573 331 TNNSQVTLSGLLNFIDGLWSA-CGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESH---N 406 (482)
Q Consensus 331 ~~~~~~~ls~LL~~ldg~~s~-~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~---~ 406 (482)
.....+++.||+.|||.... ...++|||+|||+|+.|||||+||||||.+|+++.|+.++|++++...+..... .
T Consensus 1748 -ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~ 1826 (2281)
T CHL00206 1748 -ESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEK 1826 (2281)
T ss_pred -ccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCc
Confidence 11234789999999987432 235689999999999999999999999999999999999999888754321111 1
Q ss_pred cHHHHHHHhc-CCCCCHHHHHHHhcccC----CCCCHHHHHHHHHHHHHHHHH
Q 011573 407 LFDKIGELLG-EAKMTPADVAEHLMPKT----FPADVEFSLRSLNQALELAKE 454 (482)
Q Consensus 407 ~~~~i~~l~~-~~~~s~adi~~~l~~~~----~~~~~~~~~~~l~~al~~~~~ 454 (482)
...++..++. +.|||+|||+.++-+++ ......++.+++..|+.+...
T Consensus 1827 ~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~ 1879 (2281)
T CHL00206 1827 KMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTW 1879 (2281)
T ss_pred ccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHh
Confidence 1123445555 45999999997766532 222334455566666665543
No 33
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=1.1e-28 Score=270.26 Aligned_cols=233 Identities=21% Similarity=0.296 Sum_probs=181.7
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc----
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV---- 270 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~---- 270 (482)
...+|+++.+....++++ .++..++..+..|...|...++|+||+||||||||++++++|++++.+++.++.+.+
T Consensus 147 ~~~~~~di~g~~~~~~~l-~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEV-AELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHH-HHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 346799999999999988 456677888899999999999999999999999999999999999999999987754
Q ss_pred --cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 271 --KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 271 --~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
.....++.+|..+. .||||||||||.+.. +|.. . ..+.......+++.||..||
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~---~r~~-~------------------~~g~~~~~~~~ln~lL~~md 283 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR---QRGA-G------------------LGGGHDEREQTLNQMLVEMD 283 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhh---ccCC-C------------------CCCCchHHHHHHHHHHHhhh
Confidence 24567888887764 789999999999742 2210 0 01122335578999999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADV 425 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi 425 (482)
|+.+. ..+++|+|||+++.||||++||||||.+|++++|+.++|.+|++.++.........++..++. ..|||+|||
T Consensus 284 g~~~~--~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl 361 (644)
T PRK10733 284 GFEGN--EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADL 361 (644)
T ss_pred cccCC--CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHH
Confidence 99664 458999999999999999999999999999999999999999999987654322233445555 459999999
Q ss_pred HHHhcccC----CCCCHHHHHHHHHHHHHHH
Q 011573 426 AEHLMPKT----FPADVEFSLRSLNQALELA 452 (482)
Q Consensus 426 ~~~l~~~~----~~~~~~~~~~~l~~al~~~ 452 (482)
.+++..++ ..........++.+++.+.
T Consensus 362 ~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 362 ANLVNEAALFAARGNKRVVSMVEFEKAKDKI 392 (644)
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence 98886532 2223344556665665543
No 34
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2e-26 Score=241.40 Aligned_cols=233 Identities=24% Similarity=0.309 Sum_probs=190.7
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc----
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV---- 270 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~---- 270 (482)
++.+ +.+.+...+...+...+...+..+..|...|+++++|+|+|||||||||.+++|+|++.+..++.++..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5666 78888888899999999999999999999999999999999999999999999999999999999998876
Q ss_pred --cChHHHHHHHHhcC--C-CeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhh
Q 011573 271 --KDNTELRKLLIETS--S-KSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFI 345 (482)
Q Consensus 271 --~~~~~L~~l~~~~~--~-~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 345 (482)
++++.|++.|..+. + |+||+|||||.+. ++|.. .......+.++|+..+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~---p~r~~-----------------------~~~~e~Rv~sqlltL~ 312 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALC---PKREG-----------------------ADDVESRVVSQLLTLL 312 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhC---Ccccc-----------------------cchHHHHHHHHHHHHH
Confidence 57889999999874 4 9999999999974 44421 1114678899999999
Q ss_pred cccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHH
Q 011573 346 DGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPAD 424 (482)
Q Consensus 346 dg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~ad 424 (482)
||... ..++|+|+|||+|+.|||+++| ||||..++++.|+..+|..|++.+....++....++..++. ++||++||
T Consensus 313 dg~~~--~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaD 389 (693)
T KOG0730|consen 313 DGLKP--DAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGAD 389 (693)
T ss_pred hhCcC--cCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHH
Confidence 99853 4669999999999999999999 99999999999999999999999988777664556666666 56999999
Q ss_pred HHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 011573 425 VAEHLMPKTFPADVEFSLRSLNQALELAKEEARR 458 (482)
Q Consensus 425 i~~~l~~~~~~~~~~~~~~~l~~al~~~~~~~~~ 458 (482)
+..+|..++...- ....+++..|+...++....
T Consensus 390 L~~l~~ea~~~~~-r~~~~~~~~A~~~i~psa~R 422 (693)
T KOG0730|consen 390 LAALCREASLQAT-RRTLEIFQEALMGIRPSALR 422 (693)
T ss_pred HHHHHHHHHHHHh-hhhHHHHHHHHhcCCchhhh
Confidence 9988876432211 11444555555555554433
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.9e-26 Score=253.86 Aligned_cols=210 Identities=22% Similarity=0.262 Sum_probs=171.7
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-----CCceeeccc--
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-----GYDLYDLEL-- 267 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-----~~~i~~l~l-- 267 (482)
....|++|+|.+..+..+.+.+..++..|+.|...++.++||+|||||||||||++++|+|..+ +..++.-.-
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 3467999999999999999999999999999999999999999999999999999999999988 233332221
Q ss_pred ----ccccChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHH
Q 011573 268 ----TAVKDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGL 341 (482)
Q Consensus 268 ----~~~~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 341 (482)
.-.+.+.+|+-+|.++. .|+|||+||||-+.+..... .........+.|
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk-------------------------qEqih~SIvSTL 394 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK-------------------------QEQIHASIVSTL 394 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch-------------------------HHHhhhhHHHHH
Confidence 12246778999999885 79999999999876422111 223345578899
Q ss_pred HhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCc-HHHHHHHhcC-CC
Q 011573 342 LNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNL-FDKIGELLGE-AK 419 (482)
Q Consensus 342 L~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~-~~~i~~l~~~-~~ 419 (482)
|..|||+.+. +.++||++||+++.+||||+||||||..++|++|+.++|..|+...-....+.. ......+++. .|
T Consensus 395 LaLmdGldsR--gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~g 472 (1080)
T KOG0732|consen 395 LALMDGLDSR--GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSG 472 (1080)
T ss_pred HHhccCCCCC--CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccc
Confidence 9999999764 669999999999999999999999999999999999999999998766554433 3344566664 59
Q ss_pred CCHHHHHHHhcc
Q 011573 420 MTPADVAEHLMP 431 (482)
Q Consensus 420 ~s~adi~~~l~~ 431 (482)
|-+|||+.+|..
T Consensus 473 y~gaDlkaLCTe 484 (1080)
T KOG0732|consen 473 YGGADLKALCTE 484 (1080)
T ss_pred cchHHHHHHHHH
Confidence 999999988875
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=5.1e-26 Score=253.94 Aligned_cols=209 Identities=27% Similarity=0.362 Sum_probs=170.5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc----
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV---- 270 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~---- 270 (482)
+..+|++|+|.+++++.|.+.+..++..++.|..+|+.+++|+|||||||||||++++++|++++.+++.++...+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 3478999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred --cChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 271 --KDNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 271 --~~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
.....++.+|..+ ..|+||||||||.++. .+. ..........++.|++.||
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~---~r~----------------------~~~~~~~~~~~~~Ll~~ld 307 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAP---KRE----------------------EVTGEVEKRVVAQLLTLMD 307 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcc---ccc----------------------CCcchHHHHHHHHHHHHhh
Confidence 2345688888775 4689999999999752 221 0011223567889999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADV 425 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi 425 (482)
++... ..++||+|||+++.|||+++||||||.+|+++.|+.++|.+|++.+...........+..+++ ..||+++|+
T Consensus 308 ~l~~~--~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl 385 (733)
T TIGR01243 308 GLKGR--GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADL 385 (733)
T ss_pred ccccC--CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHH
Confidence 98543 458899999999999999999999999999999999999999998776443222223444554 459999999
Q ss_pred HHHhc
Q 011573 426 AEHLM 430 (482)
Q Consensus 426 ~~~l~ 430 (482)
..++.
T Consensus 386 ~~l~~ 390 (733)
T TIGR01243 386 AALAK 390 (733)
T ss_pred HHHHH
Confidence 87654
No 37
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.2e-26 Score=233.38 Aligned_cols=242 Identities=21% Similarity=0.298 Sum_probs=172.0
Q ss_pred CCCCccccccChHHHHHHHHHHHH-Hh---hCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC-ceeeccccc
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIA-FS---KSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY-DLYDLELTA 269 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~-fl---~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~-~i~~l~l~~ 269 (482)
+--.|+++.. ..+.++.-..+.+ |. --|+.-.++|+++-+|+|||||||||||.+|+.|..-|+. +--.++-.+
T Consensus 214 Pdf~Fe~mGI-GGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 214 PDFNFESMGI-GGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCChhhccc-ccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 3366888742 1233333333332 22 2478889999999999999999999999999999999965 333344433
Q ss_pred c------cChHHHHHHHHhcC----------CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccc
Q 011573 270 V------KDNTELRKLLIETS----------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNN 333 (482)
Q Consensus 270 ~------~~~~~L~~l~~~~~----------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (482)
+ +++.++++||.++. .--||++||||+++. +|.+ ..+..+.
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICK---qRGS--------------------~~g~TGV 349 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICK---QRGS--------------------MAGSTGV 349 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHH---hcCC--------------------CCCCCCc
Confidence 3 57889999999873 346999999999753 3321 1123445
Q ss_pred hHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcccc-------CCC
Q 011573 334 SQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIE-------SHN 406 (482)
Q Consensus 334 ~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~-------~~~ 406 (482)
....+++||.-|||+..- .+++||+.||+++.+|+||+||||+.+++++++|+++.|.+|++.+-... +..
T Consensus 350 hD~VVNQLLsKmDGVeqL--NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dV 427 (744)
T KOG0741|consen 350 HDTVVNQLLSKMDGVEQL--NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADV 427 (744)
T ss_pred cHHHHHHHHHhcccHHhh--hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCc
Confidence 667899999999999664 56999999999999999999999999999999999999999988765431 122
Q ss_pred cHHHHHHHhcCCCCCHHHHHHHhcccC-------------------CCCCHHHHHHHHHHHHHHHHHHHhhhcccch
Q 011573 407 LFDKIGELLGEAKMTPADVAEHLMPKT-------------------FPADVEFSLRSLNQALELAKEEARRVKVDDK 464 (482)
Q Consensus 407 ~~~~i~~l~~~~~~s~adi~~~l~~~~-------------------~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~ 464 (482)
...+++.+. .+||+|+|.+++..+. ..+...+..++++.||+..++.-...+++..
T Consensus 428 dl~elA~lT--KNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~ 502 (744)
T KOG0741|consen 428 DLKELAALT--KNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLE 502 (744)
T ss_pred CHHHHHHHh--cCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHH
Confidence 334454443 4999999997765321 0112233456778888877765554444433
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.6e-25 Score=226.10 Aligned_cols=211 Identities=25% Similarity=0.321 Sum_probs=177.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc---
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK--- 271 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~--- 271 (482)
.+..|++++|....|+.+.+.+...+.++..|..+. ++.+|+||.||||||||+|++|||.+.+..++.++.+++.
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~ 226 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKY 226 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhc
Confidence 347789999999999999999999999899888764 5568999999999999999999999999999999988872
Q ss_pred ---ChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 272 ---DNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 272 ---~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
++.-++.+|.-+ .+|+|+||||||.++. .|. +..+..+.....++|..+|
T Consensus 227 ~Ge~eK~vralf~vAr~~qPsvifidEidslls---~Rs----------------------~~e~e~srr~ktefLiq~~ 281 (428)
T KOG0740|consen 227 VGESEKLVRALFKVARSLQPSVIFIDEIDSLLS---KRS----------------------DNEHESSRRLKTEFLLQFD 281 (428)
T ss_pred cChHHHHHHHHHHHHHhcCCeEEEechhHHHHh---hcC----------------------CcccccchhhhhHHHhhhc
Confidence 345567777555 4899999999999873 221 1233446678888999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcH-HHHHHHhc-CCCCCHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLF-DKIGELLG-EAKMTPAD 424 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~-~~i~~l~~-~~~~s~ad 424 (482)
+..+...+.++||+|||.|+.+|.|++| ||...+++|.|+.+.|..+|+++|....+.+. .+++.+++ +.|||+.|
T Consensus 282 ~~~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsd 359 (428)
T KOG0740|consen 282 GKNSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSD 359 (428)
T ss_pred cccCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCccccc
Confidence 9988877778899999999999999999 99999999999999999999999987766554 57777777 45999999
Q ss_pred HHHHhcccC
Q 011573 425 VAEHLMPKT 433 (482)
Q Consensus 425 i~~~l~~~~ 433 (482)
|.++|..++
T Consensus 360 i~~l~kea~ 368 (428)
T KOG0740|consen 360 ITALCKEAA 368 (428)
T ss_pred HHHHHHHhh
Confidence 998887643
No 39
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.2e-21 Score=194.89 Aligned_cols=213 Identities=23% Similarity=0.272 Sum_probs=156.6
Q ss_pred hhhhhhhHHHHHHhhHHHHhhcccceeeccCCC-------CceeeeccCCCCccccccChHHHHHHHHHHHHHhhCHHHH
Q 011573 154 DLILGPYLVSVLKEGREIKVRNRMRKLYTNNGS-------NWVHVVFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFY 226 (482)
Q Consensus 154 ~~v~~~yl~~~l~~~~~~~~~~~~~~l~~~~~~-------~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y 226 (482)
..|.+.|+..+|-+...+++.++.+.-|...-+ .-.........+|+.|++.+.++++|.+ |..-..+
T Consensus 302 ~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~-lA~aTaN---- 376 (630)
T KOG0742|consen 302 TLVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIED-LAIATAN---- 376 (630)
T ss_pred chhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHH-HHHHhcc----
Confidence 568999999999998888887775542211000 0001112233569999999999999844 4333222
Q ss_pred HHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc-----cChHHHHHHHHhc---CCCeEEEEeCCcccc
Q 011573 227 ARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV-----KDNTELRKLLIET---SSKSIIVIEDIDCSL 298 (482)
Q Consensus 227 ~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~-----~~~~~L~~l~~~~---~~~sIl~iDdiD~~~ 298 (482)
.+....+-|++|||||||||||++++-||.+.|+++..+.-+++ .....+.++|.=+ ...-+|||||.|+++
T Consensus 377 TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFL 456 (630)
T KOG0742|consen 377 TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFL 456 (630)
T ss_pred cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHH
Confidence 23445667999999999999999999999999999888766665 2456788888744 356789999999986
Q ss_pred cccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCe
Q 011573 299 DLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRM 378 (482)
Q Consensus 299 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~ 378 (482)
+.+.+ ...+...+..|+.||-..... +..++++.+||+|+.||.|+-. ||
T Consensus 457 --ceRnk----------------------tymSEaqRsaLNAlLfRTGdq----SrdivLvlAtNrpgdlDsAV~D--Ri 506 (630)
T KOG0742|consen 457 --CERNK----------------------TYMSEAQRSALNALLFRTGDQ----SRDIVLVLATNRPGDLDSAVND--RI 506 (630)
T ss_pred --HHhch----------------------hhhcHHHHHHHHHHHHHhccc----ccceEEEeccCCccchhHHHHh--hh
Confidence 22221 223344566778877654332 2458899999999999999999 99
Q ss_pred eeEEEccCCCHHHHHHHHHHhcc
Q 011573 379 DKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 379 d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
|..|+||+|..++|..|+..||.
T Consensus 507 de~veFpLPGeEERfkll~lYln 529 (630)
T KOG0742|consen 507 DEVVEFPLPGEEERFKLLNLYLN 529 (630)
T ss_pred hheeecCCCChHHHHHHHHHHHH
Confidence 99999999999999999999986
No 40
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.84 E-value=1.3e-20 Score=164.97 Aligned_cols=123 Identities=31% Similarity=0.555 Sum_probs=100.1
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeeccccccc------ChHHHHHHHHhc--CC-CeEEEEeCCccccccccccccc
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK------DNTELRKLLIET--SS-KSIIVIEDIDCSLDLTGQRRKK 307 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~------~~~~L~~l~~~~--~~-~sIl~iDdiD~~~~~~~~r~~~ 307 (482)
+|||||||||||++|+++|++++.+++.+++..+. ....+..+|..+ .. |+||+|||+|.++... .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~-- 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---Q-- 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---S--
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---c--
Confidence 58999999999999999999999999999988774 345678888775 34 8999999999986311 0
Q ss_pred ccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccC
Q 011573 308 KEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSH 386 (482)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~ 386 (482)
..........+..|++.++..... ..++++|+|||.++.+||+|+| |||+..|++|.
T Consensus 76 --------------------~~~~~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 76 --------------------PSSSSFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp --------------------TSSSHHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred --------------------cccccccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 012334567888999999998653 3458999999999999999998 89999999874
No 41
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.83 E-value=2.9e-20 Score=155.30 Aligned_cols=96 Identities=50% Similarity=0.763 Sum_probs=90.6
Q ss_pred hhhHHHHHHHHHHHHHHhc-ccCCeEEEEEeeccCCCCCCcHHHHHHHHHhcccccccccceEEeeecCCCCceEEecCC
Q 011573 27 YFPYELRHNIEKYSQRLVS-FFYPYVQITFNEFTGDRFMRSEAYSAIENYLSSKSSTQAKRLKADIIKNSSQSLVLSMDD 105 (482)
Q Consensus 27 ~~P~~l~~~l~~~~~~l~~-~~~~~~ti~i~E~~~~~~~~~~~y~~~~~~ls~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 105 (482)
|+|++|+.++.+++++++. +|+||+||+|+|+. |+..|++|+|+++||++++++.+++|+++.+++ +++++++|++
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~~--g~~~N~ly~a~~~YL~s~~s~~a~rL~~~~~~~-~~~~~l~l~~ 77 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEFD--GLSRNELYDAAQAYLSSKISPSARRLKASKSKN-SKNLVLSLDD 77 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeCC--CccccHHHHHHHHHHhhccCcccceeeecccCC-CCceEEecCC
Confidence 6899999999999988775 99999999999996 588999999999999999999999999999999 8899999999
Q ss_pred CcccccccCCeeEEEEEeee
Q 011573 106 HEEVADEFQGIKLWWSSGKH 125 (482)
Q Consensus 106 ~~~~~d~f~g~~~~w~~~~~ 125 (482)
+++|.|+|+|+++||..++.
T Consensus 78 ~e~V~D~F~Gv~v~W~~~~~ 97 (98)
T PF14363_consen 78 GEEVVDVFEGVKVWWSSVCT 97 (98)
T ss_pred CCEEEEEECCEEEEEEEEcc
Confidence 99999999999999999864
No 42
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.7e-19 Score=175.23 Aligned_cols=179 Identities=20% Similarity=0.308 Sum_probs=132.0
Q ss_pred CccccccChHHHHHHHHHHHHHhhCHHHHHH-hCCCcCccccccCCCCchHHHHHHHHHHHhC---------Cceeeccc
Q 011573 198 TFQTLAMEPAEKKEIIDDLIAFSKSEDFYAR-IGRAWKRGYLLYGPPGTGKSTMIAAMANLLG---------YDLYDLEL 267 (482)
Q Consensus 198 ~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~-~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~---------~~i~~l~l 267 (482)
-|++|+.+..+|++++.....-+...+.-.. -=+.|.|-+|||||||||||||++|+|+.|. ..++.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 3778899999999998777654432221111 1257889999999999999999999999983 23556666
Q ss_pred ccc------cChHHHHHHHHhcC-------CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccch
Q 011573 268 TAV------KDNTELRKLLIETS-------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNS 334 (482)
Q Consensus 268 ~~~------~~~~~L~~l~~~~~-------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (482)
.++ ++..-+.++|.+.. .-..++|||++.+. ..|... ....+..+.
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa---~aR~s~------------------~S~~EpsDa 278 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLA---AARTSA------------------SSRNEPSDA 278 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHH---HHHHhh------------------hcCCCCchH
Confidence 665 34455566665542 23466789999974 222110 011233456
Q ss_pred HHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 335 QVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 335 ~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
-+.++.+|..||.+... .++++.+|+|-.+.||-|+.. |-|.+.++++|+.+++..|++..+.
T Consensus 279 IRvVNalLTQlDrlK~~--~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 279 IRVVNALLTQLDRLKRY--PNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred HHHHHHHHHHHHHhccC--CCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHH
Confidence 78899999999999654 568888999999999999999 9999999999999999999987764
No 43
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.77 E-value=1e-17 Score=157.98 Aligned_cols=184 Identities=21% Similarity=0.228 Sum_probs=120.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccCh
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDN 273 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~ 273 (482)
-.|.+|++++|.+++++.+.-.+...... + ..-..+||||||||||||||..||++++.++..++...+...
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~-~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~ 89 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKR-------G-EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA 89 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------T-S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhc-------C-CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH
Confidence 47899999999999998764333332211 1 123579999999999999999999999999998887777777
Q ss_pred HHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccc----
Q 011573 274 TELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLW---- 349 (482)
Q Consensus 274 ~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~---- 349 (482)
.+|..++.....+.|||||||+.+ ++.....|+.+|+...
T Consensus 90 ~dl~~il~~l~~~~ILFIDEIHRl------------------------------------nk~~qe~LlpamEd~~idii 133 (233)
T PF05496_consen 90 GDLAAILTNLKEGDILFIDEIHRL------------------------------------NKAQQEILLPAMEDGKIDII 133 (233)
T ss_dssp HHHHHHHHT--TT-EEEECTCCC--------------------------------------HHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEechhhc------------------------------------cHHHHHHHHHHhccCeEEEE
Confidence 889999999889999999999996 2233344666665321
Q ss_pred -cCCC---------CceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHH-HHHhcCC
Q 011573 350 -SACG---------GERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKI-GELLGEA 418 (482)
Q Consensus 350 -s~~~---------~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i-~~l~~~~ 418 (482)
.... ...-+|++|++...|.+.|+. ||.....+.+.+.++..+|+++........+.++. ..++...
T Consensus 134 iG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rs 211 (233)
T PF05496_consen 134 IGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRS 211 (233)
T ss_dssp BSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCT
T ss_pred eccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhc
Confidence 1111 124689999999999999999 99999999999999999999987665554444432 3333334
Q ss_pred CCCHH
Q 011573 419 KMTPA 423 (482)
Q Consensus 419 ~~s~a 423 (482)
.=||.
T Consensus 212 rGtPR 216 (233)
T PF05496_consen 212 RGTPR 216 (233)
T ss_dssp TTSHH
T ss_pred CCChH
Confidence 44444
No 44
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.76 E-value=5.4e-17 Score=159.93 Aligned_cols=170 Identities=16% Similarity=0.240 Sum_probs=120.2
Q ss_pred ccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcC---ccccccCCCCchHHHHHHHHHHHh---C----Cceeecccc
Q 011573 199 FQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWK---RGYLLYGPPGTGKSTMIAAMANLL---G----YDLYDLELT 268 (482)
Q Consensus 199 ~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~---rg~LL~GPpGtGKTsl~~aiA~~l---~----~~i~~l~l~ 268 (482)
+++++|.+++|+.|.+.+ .+........+.|.... .++|||||||||||++|+++|+.+ + .+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~-~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIY-AWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHH-HHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 578999999999996554 44444455556676533 458999999999999999999876 2 245555555
Q ss_pred ccc------ChHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHH
Q 011573 269 AVK------DNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLL 342 (482)
Q Consensus 269 ~~~------~~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 342 (482)
.+. +...++.+|..+. ++||||||+|.+.. +. ........+..|+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~-~~VL~IDE~~~L~~--~~--------------------------~~~~~~~~i~~Ll 134 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL-GGVLFIDEAYSLAR--GG--------------------------EKDFGKEAIDTLV 134 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc-CCEEEEechhhhcc--CC--------------------------ccchHHHHHHHHH
Confidence 442 2455677776654 68999999999731 00 0112234567788
Q ss_pred hhhcccccCCCCceEEEEecCCcC-----cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccC
Q 011573 343 NFIDGLWSACGGERLIVFTTNYIE-----KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIES 404 (482)
Q Consensus 343 ~~ldg~~s~~~~~~iiI~TTN~~~-----~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~ 404 (482)
+.|+.. ....++|++++..+ .++|+|.+ ||+.+|+|+.++.+++.+|++.++....
T Consensus 135 ~~~e~~----~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~ 195 (261)
T TIGR02881 135 KGMEDN----RNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKERE 195 (261)
T ss_pred HHHhcc----CCCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcC
Confidence 888764 23356666554332 47899999 9999999999999999999999986543
No 45
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.75 E-value=2.5e-17 Score=167.54 Aligned_cols=189 Identities=20% Similarity=0.205 Sum_probs=137.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccChH
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNT 274 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~ 274 (482)
.|.+|++++|.++.++.+...+...... + ...+++|||||||||||++++++|++++.++...+...+....
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~-~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~ 91 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR-------G-EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPG 91 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc-------C-CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChH
Confidence 5789999999999998876555433221 2 3457899999999999999999999999988877766666667
Q ss_pred HHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccc-----
Q 011573 275 ELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLW----- 349 (482)
Q Consensus 275 ~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~----- 349 (482)
.+..++.....++||||||||.+.. . ....|.+.++...
T Consensus 92 ~l~~~l~~l~~~~vl~IDEi~~l~~---~---------------------------------~~e~l~~~~e~~~~~~~l 135 (328)
T PRK00080 92 DLAAILTNLEEGDVLFIDEIHRLSP---V---------------------------------VEEILYPAMEDFRLDIMI 135 (328)
T ss_pred HHHHHHHhcccCCEEEEecHhhcch---H---------------------------------HHHHHHHHHHhcceeeee
Confidence 7888888888899999999998631 0 0111223332210
Q ss_pred ----cC-----CCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHH-HHHHHhcCCC
Q 011573 350 ----SA-----CGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFD-KIGELLGEAK 419 (482)
Q Consensus 350 ----s~-----~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~-~i~~l~~~~~ 419 (482)
+. .-....+|++||++..++++|++ ||...+.|++++.+++.++++...........+ .+..++...+
T Consensus 136 ~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~ 213 (328)
T PRK00080 136 GKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSR 213 (328)
T ss_pred ccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcC
Confidence 00 01236789999999999999998 999999999999999999999887655443333 3445555555
Q ss_pred CCHHHHHHHh
Q 011573 420 MTPADVAEHL 429 (482)
Q Consensus 420 ~s~adi~~~l 429 (482)
-+|..+...|
T Consensus 214 G~pR~a~~~l 223 (328)
T PRK00080 214 GTPRIANRLL 223 (328)
T ss_pred CCchHHHHHH
Confidence 5666555444
No 46
>CHL00181 cbbX CbbX; Provisional
Probab=99.75 E-value=3.5e-17 Score=163.06 Aligned_cols=170 Identities=18% Similarity=0.281 Sum_probs=122.9
Q ss_pred cccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCc-c--ccccCCCCchHHHHHHHHHHHhC-------Cceeeccccc
Q 011573 200 QTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKR-G--YLLYGPPGTGKSTMIAAMANLLG-------YDLYDLELTA 269 (482)
Q Consensus 200 ~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~r-g--~LL~GPpGtGKTsl~~aiA~~l~-------~~i~~l~l~~ 269 (482)
.+++|.+++|++|.+.+ .++..+..+.+.|.+.+. | +||+||||||||++|+++|..+. .+++.++...
T Consensus 23 ~~l~Gl~~vK~~i~e~~-~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIA-ALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHH-HHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 36899999999986654 556556777788876543 4 79999999999999999999862 2466666544
Q ss_pred c------cChHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHh
Q 011573 270 V------KDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLN 343 (482)
Q Consensus 270 ~------~~~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 343 (482)
+ .+......+|..+ .++||||||+|.+.. .+. ...........|+.
T Consensus 102 l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~---~~~------------------------~~~~~~e~~~~L~~ 153 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYK---PDN------------------------ERDYGSEAIEILLQ 153 (287)
T ss_pred HHHHHhccchHHHHHHHHHc-cCCEEEEEccchhcc---CCC------------------------ccchHHHHHHHHHH
Confidence 3 1334456666665 457999999998642 110 11223456677888
Q ss_pred hhcccccCCCCceEEEEecCCcC-----cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccC
Q 011573 344 FIDGLWSACGGERLIVFTTNYIE-----KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIES 404 (482)
Q Consensus 344 ~ldg~~s~~~~~~iiI~TTN~~~-----~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~ 404 (482)
.|+... .+.+||++++... .++|+|.+ ||+.+|+|+.++.+++.+|+..++....
T Consensus 154 ~me~~~----~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~ 213 (287)
T CHL00181 154 VMENQR----DDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQ 213 (287)
T ss_pred HHhcCC----CCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhc
Confidence 887642 3467777765321 34799999 9999999999999999999999987544
No 47
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.73 E-value=5.2e-17 Score=161.75 Aligned_cols=169 Identities=19% Similarity=0.285 Sum_probs=124.7
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHhCCCc---CccccccCCCCchHHHHHHHHHHHhC-------Cceeecccccc
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAW---KRGYLLYGPPGTGKSTMIAAMANLLG-------YDLYDLELTAV 270 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~---~rg~LL~GPpGtGKTsl~~aiA~~l~-------~~i~~l~l~~~ 270 (482)
.++|.+++|++|.+ +..++..++.+.+.|.+. ..++||+||||||||++|+++|..+. .+++.+++..+
T Consensus 23 ~l~Gl~~vk~~i~e-~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIRE-IAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHH-HHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 58999999999855 445577777888889764 45899999999999999999998873 25777665443
Q ss_pred ------cChHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhh
Q 011573 271 ------KDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNF 344 (482)
Q Consensus 271 ------~~~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 344 (482)
.+...++.+|..+ .+++|||||||.+.. .+. ...........|++.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~---~~~------------------------~~~~~~~~~~~Ll~~ 153 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYR---PDN------------------------ERDYGQEAIEILLQV 153 (284)
T ss_pred hHhhcccchHHHHHHHHHc-cCcEEEEechhhhcc---CCC------------------------ccchHHHHHHHHHHH
Confidence 1334566677665 458999999998631 110 112234566778888
Q ss_pred hcccccCCCCceEEEEecCC--cC---cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccC
Q 011573 345 IDGLWSACGGERLIVFTTNY--IE---KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIES 404 (482)
Q Consensus 345 ldg~~s~~~~~~iiI~TTN~--~~---~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~ 404 (482)
|+.. ..++++|++++. .+ .++|+|.+ ||+.+|+||.++.+++..|+++++....
T Consensus 154 le~~----~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~ 212 (284)
T TIGR02880 154 MENQ----RDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQ 212 (284)
T ss_pred HhcC----CCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhc
Confidence 8753 244677777654 23 25899999 9999999999999999999999987643
No 48
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.72 E-value=1.4e-16 Score=152.09 Aligned_cols=176 Identities=21% Similarity=0.292 Sum_probs=146.0
Q ss_pred CCceeeeccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCce
Q 011573 186 SNWVHVVFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDL 262 (482)
Q Consensus 186 ~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i 262 (482)
+...++....|..+++|+|-+.+|+.|++....|+.. .+...+||||++||||||+++|+.+++ |+.+
T Consensus 13 ~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRl 83 (249)
T PF05673_consen 13 GYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRL 83 (249)
T ss_pred CcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceE
Confidence 3566777777899999999999999999999999986 246889999999999999999999987 7888
Q ss_pred eecccccccChHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHH
Q 011573 263 YDLELTAVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLL 342 (482)
Q Consensus 263 ~~l~l~~~~~~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 342 (482)
+.+.-..+.+-..|...+...+.+.|||+||+-- + ........|-
T Consensus 84 Iev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsF--e---------------------------------~~d~~yk~LK 128 (249)
T PF05673_consen 84 IEVSKEDLGDLPELLDLLRDRPYKFILFCDDLSF--E---------------------------------EGDTEYKALK 128 (249)
T ss_pred EEECHHHhccHHHHHHHHhcCCCCEEEEecCCCC--C---------------------------------CCcHHHHHHH
Confidence 8888888888888999999889999999998653 1 1123456788
Q ss_pred hhhcccccCCCCceEEEEecCCcCcCCH-----------------------hhhcCCCeeeEEEccCCCHHHHHHHHHHh
Q 011573 343 NFIDGLWSACGGERLIVFTTNYIEKLDP-----------------------ALIRKGRMDKHIELSHCSYEAFKVLAKNY 399 (482)
Q Consensus 343 ~~ldg~~s~~~~~~iiI~TTN~~~~LD~-----------------------aL~RpGR~d~~I~~~~p~~~~~~~l~~~~ 399 (482)
..|||-....+++++|.+|+|+...++. +|-. ||...|.|..|+.++..+|++++
T Consensus 129 s~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsD--RFGL~l~F~~~~q~~YL~IV~~~ 206 (249)
T PF05673_consen 129 SVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSD--RFGLWLSFYPPDQEEYLAIVRHY 206 (249)
T ss_pred HHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHH--hCCcEEEecCCCHHHHHHHHHHH
Confidence 8899988778899999999997544432 3444 99999999999999999999999
Q ss_pred ccccCCCc
Q 011573 400 LNIESHNL 407 (482)
Q Consensus 400 l~~~~~~~ 407 (482)
+.......
T Consensus 207 ~~~~g~~~ 214 (249)
T PF05673_consen 207 AERYGLEL 214 (249)
T ss_pred HHHcCCCC
Confidence 86554433
No 49
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.72 E-value=9.2e-17 Score=161.60 Aligned_cols=183 Identities=17% Similarity=0.163 Sum_probs=129.2
Q ss_pred CccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHH
Q 011573 198 TFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELR 277 (482)
Q Consensus 198 ~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~ 277 (482)
+|++++|.+++++.|...+...... ....++++||||||||||++++++|++++.++..+..........+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH
Confidence 6899999999998876655433222 12346799999999999999999999999988777666555566777
Q ss_pred HHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccc--------
Q 011573 278 KLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLW-------- 349 (482)
Q Consensus 278 ~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-------- 349 (482)
..+.....+.||||||||.+.+ .....|++.++...
T Consensus 74 ~~l~~~~~~~vl~iDEi~~l~~------------------------------------~~~e~l~~~~~~~~~~~v~~~~ 117 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRLSP------------------------------------AVEELLYPAMEDFRLDIVIGKG 117 (305)
T ss_pred HHHHhcccCCEEEEehHhhhCH------------------------------------HHHHHhhHHHhhhheeeeeccC
Confidence 7777778889999999998631 01112333332211
Q ss_pred ------cCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHH-HHHHHhcCCCCCH
Q 011573 350 ------SACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFD-KIGELLGEAKMTP 422 (482)
Q Consensus 350 ------s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~-~i~~l~~~~~~s~ 422 (482)
.....+.++|++||++..++++|++ ||...+.+++++.++..++++...........+ .+..++...+=.|
T Consensus 118 ~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p 195 (305)
T TIGR00635 118 PSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP 195 (305)
T ss_pred ccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc
Confidence 0011236899999999999999999 999899999999999999999877644333322 2344444443345
Q ss_pred HHHH
Q 011573 423 ADVA 426 (482)
Q Consensus 423 adi~ 426 (482)
..+.
T Consensus 196 R~~~ 199 (305)
T TIGR00635 196 RIAN 199 (305)
T ss_pred chHH
Confidence 5444
No 50
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.69 E-value=5.7e-16 Score=174.01 Aligned_cols=159 Identities=25% Similarity=0.300 Sum_probs=113.9
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccCh-------
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDN------- 273 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~------- 273 (482)
++.|.+++|+.|.+.+..... .+......+||+||||||||+++++||+.++.+++.++++.+.+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~-------~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKL-------RGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHh-------hcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 367888888888765543321 222233479999999999999999999999999999887655332
Q ss_pred --------HHHHHHHHhcC-CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhh
Q 011573 274 --------TELRKLLIETS-SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNF 344 (482)
Q Consensus 274 --------~~L~~l~~~~~-~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 344 (482)
..+.+.|..+. .+.||||||||.+.. +.+ + ...+.||..
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~--~~~---------------------------~---~~~~aLl~~ 441 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGS--SFR---------------------------G---DPASALLEV 441 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCC--ccC---------------------------C---CHHHHHHHh
Confidence 23455555443 456999999999741 000 0 123456666
Q ss_pred hcc-----cccC------CCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 345 IDG-----LWSA------CGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 345 ldg-----~~s~------~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
||. +... .-.++++|+|||.++.|||+|++ ||+ .|+|+.|+.+++..|+++|+.
T Consensus 442 ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 442 LDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred cCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHH
Confidence 652 1000 01357899999999999999999 997 789999999999999999873
No 51
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=8.4e-16 Score=163.42 Aligned_cols=158 Identities=23% Similarity=0.314 Sum_probs=115.3
Q ss_pred cccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHH----
Q 011573 202 LAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELR---- 277 (482)
Q Consensus 202 l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~---- 277 (482)
-.|.+++|++|++.+.-....+ .--..-++|+||||+|||||+++||..+|..++.++++.+.++.+++
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~-------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTK-------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhc-------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc
Confidence 4578899999987764332221 11112367899999999999999999999999999999998887764
Q ss_pred -----------HHHHhc-CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhh
Q 011573 278 -----------KLLIET-SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFI 345 (482)
Q Consensus 278 -----------~l~~~~-~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 345 (482)
+-+..+ ..+-+++|||||.+.. +.| +| .-|.||..|
T Consensus 398 TYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~s--s~r-------------GD-----------------PaSALLEVL 445 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGS--SFR-------------GD-----------------PASALLEVL 445 (782)
T ss_pred cccccCChHHHHHHHHhCCcCCeEEeechhhccC--CCC-------------CC-----------------hHHHHHhhc
Confidence 222333 2567999999999731 111 11 123455554
Q ss_pred cc---------ccc--CCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 346 DG---------LWS--ACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 346 dg---------~~s--~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
|= ... ..=.++++|+|.|..+.+|.+|+. ||. .|+++-.+.++...|+++||=
T Consensus 446 DPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 446 DPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred CHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcc
Confidence 41 100 011458999999999999999999 997 999999999999999999973
No 52
>PRK04195 replication factor C large subunit; Provisional
Probab=99.65 E-value=2.9e-15 Score=160.08 Aligned_cols=163 Identities=21% Similarity=0.346 Sum_probs=124.5
Q ss_pred eccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc
Q 011573 192 VFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK 271 (482)
Q Consensus 192 ~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~ 271 (482)
....|.+|++|+|.+++++.+...+..+.+ |.+ ++++|||||||||||++|+++|++++++++.++.+...
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~-~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKP-KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCC-CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 456899999999999999998877766553 222 68999999999999999999999999999999998876
Q ss_pred ChHHHHHHHHhc--------CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHh
Q 011573 272 DNTELRKLLIET--------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLN 343 (482)
Q Consensus 272 ~~~~L~~l~~~~--------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 343 (482)
+...+..+.... ..+.||+|||+|.+.. . .....+..|++
T Consensus 77 ~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~---~-----------------------------~d~~~~~aL~~ 124 (482)
T PRK04195 77 TADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG---N-----------------------------EDRGGARAILE 124 (482)
T ss_pred cHHHHHHHHHHhhccCcccCCCCeEEEEecCccccc---c-----------------------------cchhHHHHHHH
Confidence 666666655433 2578999999998631 0 01123455777
Q ss_pred hhcccccCCCCceEEEEecCCcCcCCH-hhhcCCCeeeEEEccCCCHHHHHHHHHHhccccC
Q 011573 344 FIDGLWSACGGERLIVFTTNYIEKLDP-ALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIES 404 (482)
Q Consensus 344 ~ldg~~s~~~~~~iiI~TTN~~~~LD~-aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~ 404 (482)
.++.. ...+|+++|.+..+++ .|.+ |+ ..|.|+.|+.++...+++..+..+.
T Consensus 125 ~l~~~------~~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~eg 177 (482)
T PRK04195 125 LIKKA------KQPIILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEG 177 (482)
T ss_pred HHHcC------CCCEEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcC
Confidence 76632 1347778899988888 6665 66 4899999999999999988876543
No 53
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.8e-15 Score=158.69 Aligned_cols=177 Identities=25% Similarity=0.386 Sum_probs=119.6
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHH----
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTEL---- 276 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L---- 276 (482)
+-.|..++|++|++.|.-- +-.|-.-..-+.|+||||+||||++++||..||..++.++++.+.+..++
T Consensus 412 DHYgm~dVKeRILEfiAV~-------kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVG-------KLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccchHHHHHHHHHHHHHH-------hhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 4457788999888766321 11122223346789999999999999999999999999999998776555
Q ss_pred -----------HHHHHhcC-CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHH--
Q 011573 277 -----------RKLLIETS-SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLL-- 342 (482)
Q Consensus 277 -----------~~l~~~~~-~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL-- 342 (482)
.+.+.... .+-+++|||||.+- .|.+ .|| ...|-+||
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG--~g~q-------------GDP--------------asALLElLDP 535 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLG--SGHQ-------------GDP--------------ASALLELLDP 535 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCceEEeehhhhhC--CCCC-------------CCh--------------HHHHHHhcCh
Confidence 33333332 56799999999962 1111 111 11122222
Q ss_pred ----hhhcccccC--CCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc
Q 011573 343 ----NFIDGLWSA--CGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG 416 (482)
Q Consensus 343 ----~~ldg~~s~--~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~ 416 (482)
|++|....- .-..+++|+|.|..+.|+|+|+. ||. .|+++-...++...|+++||-. +...
T Consensus 536 EQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip----------~a~~ 602 (906)
T KOG2004|consen 536 EQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIP----------QALK 602 (906)
T ss_pred hhccchhhhccccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhh----------HHHH
Confidence 222221110 01348999999999999999999 997 8999999999999999999832 3344
Q ss_pred CCCCCHHHHH
Q 011573 417 EAKMTPADVA 426 (482)
Q Consensus 417 ~~~~s~adi~ 426 (482)
.+|+++.+|.
T Consensus 603 ~~gl~~e~v~ 612 (906)
T KOG2004|consen 603 DCGLKPEQVK 612 (906)
T ss_pred HcCCCHHhcC
Confidence 4566665543
No 54
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.4e-15 Score=159.13 Aligned_cols=153 Identities=24% Similarity=0.379 Sum_probs=113.5
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC-------------
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY------------- 260 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~------------- 260 (482)
..|.+|++++|.+.+++.|...+. . | ..+.+||||||||||||++|+++|+.++.
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~----~-------~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALK----K-------N-SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 478999999999988776644332 2 1 23567999999999999999999999865
Q ss_pred -----------ceeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCcccc
Q 011573 261 -----------DLYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQK 323 (482)
Q Consensus 261 -----------~i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 323 (482)
+++.++.++-..-..++++..... ...||+|||+|.+-
T Consensus 76 ~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------------------- 130 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------------------- 130 (472)
T ss_pred HHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-------------------------
Confidence 455555543334455666554432 45799999999862
Q ss_pred cccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 324 LGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 324 ~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
...+..||..++.. ++..++|++|+.+..++++|+. |+. .++|..++.++...+++....
T Consensus 131 -----------~~a~~~LLk~LE~p----~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~ 190 (472)
T PRK14962 131 -----------KEAFNALLKTLEEP----PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAE 190 (472)
T ss_pred -----------HHHHHHHHHHHHhC----CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHH
Confidence 22456688888764 3457788888888899999999 885 899999999998888877654
No 55
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=2.6e-15 Score=157.10 Aligned_cols=156 Identities=15% Similarity=0.338 Sum_probs=115.5
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc-----------
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD----------- 261 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~----------- 261 (482)
.-.|.+|++|+|.+.+.+.|...+.. | ..+..||||||||||||++|+++|+.++..
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKS-----------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 34789999999999888876554431 1 123569999999999999999999999762
Q ss_pred -------------eeecccccccChHHHHHHHHhc------CCCeEEEEeCCcccccccccccccccccccCCCCCCccc
Q 011573 262 -------------LYDLELTAVKDNTELRKLLIET------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQ 322 (482)
Q Consensus 262 -------------i~~l~l~~~~~~~~L~~l~~~~------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~ 322 (482)
++.++..+-.+.+.++.+.... ....|+||||+|.+
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L------------------------- 133 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML------------------------- 133 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-------------------------
Confidence 3334433222344556554433 24569999999986
Q ss_pred ccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 323 KLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 323 ~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
+...++.||..|+.. ...+++|++|+.++.|.++++. |+. ++.|..++.++....++..+..
T Consensus 134 -----------s~~A~NALLKtLEEP----p~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~ 195 (484)
T PRK14956 134 -----------TDQSFNALLKTLEEP----PAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKI 195 (484)
T ss_pred -----------CHHHHHHHHHHhhcC----CCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHH
Confidence 223567788888763 3568899999999999999999 995 8999999988888888777654
Q ss_pred c
Q 011573 403 E 403 (482)
Q Consensus 403 ~ 403 (482)
+
T Consensus 196 E 196 (484)
T PRK14956 196 E 196 (484)
T ss_pred c
Confidence 3
No 56
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=3.2e-15 Score=160.49 Aligned_cols=180 Identities=19% Similarity=0.255 Sum_probs=130.4
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC-------------
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY------------- 260 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~------------- 260 (482)
..|.+|++|+|.+.+++.|.+.+. .| ..+..|||+||||||||++|+++|+.+++
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~-----------~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALE-----------RG-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 368999999999999887765553 12 23478999999999999999999999875
Q ss_pred -----------ceeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCcccc
Q 011573 261 -----------DLYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQK 323 (482)
Q Consensus 261 -----------~i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 323 (482)
+++.++.++-.....++.++.... ...|++|||+|.+-
T Consensus 77 sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------------------------- 131 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------------------------- 131 (702)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-------------------------
Confidence 445555544445566777776542 45799999999862
Q ss_pred cccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcccc
Q 011573 324 LGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIE 403 (482)
Q Consensus 324 ~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~ 403 (482)
....+.||..|+.. .+...+|++|+.+..+++.++. |+. +++|..++.++....++..+..+
T Consensus 132 -----------~~A~NALLKtLEEP----P~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kE 193 (702)
T PRK14960 132 -----------THSFNALLKTLEEP----PEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKE 193 (702)
T ss_pred -----------HHHHHHHHHHHhcC----CCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHc
Confidence 22466788888864 3456888888999999999997 895 99999999999988888877655
Q ss_pred CCCc-HHHHHHHhcCCCCCHHHHHHH
Q 011573 404 SHNL-FDKIGELLGEAKMTPADVAEH 428 (482)
Q Consensus 404 ~~~~-~~~i~~l~~~~~~s~adi~~~ 428 (482)
.... .+.+..++...+-+..++...
T Consensus 194 gI~id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 194 QIAADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4332 223444444444455555444
No 57
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=1.7e-15 Score=162.12 Aligned_cols=156 Identities=17% Similarity=0.263 Sum_probs=120.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC-------------
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY------------- 260 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~------------- 260 (482)
.+|.+|++|+|.+.+++.|.+.+.. | ..+..|||+||+|||||++++++|+.+++
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~-----------g-RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQ-----------Q-RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 4799999999999998877655431 1 23468999999999999999999999976
Q ss_pred ----------------ceeecccccccChHHHHHHHHhc------CCCeEEEEeCCcccccccccccccccccccCCCCC
Q 011573 261 ----------------DLYDLELTAVKDNTELRKLLIET------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDK 318 (482)
Q Consensus 261 ----------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~ 318 (482)
+++.++..+-.+.+.+++++... ....|+||||+|.+
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L--------------------- 136 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML--------------------- 136 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc---------------------
Confidence 34444444333456677776653 24579999999986
Q ss_pred CcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHH
Q 011573 319 DPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKN 398 (482)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~ 398 (482)
+....+.||..|+.- .++.+||++||.+.+|.+.++. || .++.|..++.++....++.
T Consensus 137 ---------------s~~AaNALLKTLEEP----P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~ 194 (700)
T PRK12323 137 ---------------TNHAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDA 194 (700)
T ss_pred ---------------CHHHHHHHHHhhccC----CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHH
Confidence 223567789888863 3557899999999999999999 99 5999999999998888887
Q ss_pred hccccC
Q 011573 399 YLNIES 404 (482)
Q Consensus 399 ~l~~~~ 404 (482)
.+..+.
T Consensus 195 Il~~Eg 200 (700)
T PRK12323 195 ILGEEG 200 (700)
T ss_pred HHHHcC
Confidence 765543
No 58
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=4.6e-15 Score=160.78 Aligned_cols=156 Identities=17% Similarity=0.264 Sum_probs=118.9
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC-------------
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY------------- 260 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~------------- 260 (482)
..|.+|++|+|.+.+++.|.+.+. . | ..+..||||||+|||||++++++|+.+++
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~----~-------g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALD----G-------G-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHh----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 368999999999988887755442 1 1 23568999999999999999999999865
Q ss_pred -----------ceeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCcccc
Q 011573 261 -----------DLYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQK 323 (482)
Q Consensus 261 -----------~i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 323 (482)
+++.++..+-...+.++.++.... ...|+||||+|.+-
T Consensus 78 sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------------------- 132 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------------------- 132 (830)
T ss_pred HHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-------------------------
Confidence 344444433334456777766532 45799999999862
Q ss_pred cccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcccc
Q 011573 324 LGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIE 403 (482)
Q Consensus 324 ~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~ 403 (482)
....+.||..|+.. ....+||++||++.+|.+.|+. || .++.|..++.++....++..+..+
T Consensus 133 -----------~~A~NALLKtLEEP----P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~E 194 (830)
T PRK07003 133 -----------NHAFNAMLKTLEEP----PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEE 194 (830)
T ss_pred -----------HHHHHHHHHHHHhc----CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHc
Confidence 23467788888864 3458899999999999999999 99 599999999999988888877654
Q ss_pred C
Q 011573 404 S 404 (482)
Q Consensus 404 ~ 404 (482)
.
T Consensus 195 g 195 (830)
T PRK07003 195 R 195 (830)
T ss_pred C
Confidence 3
No 59
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.63 E-value=1.8e-15 Score=151.91 Aligned_cols=151 Identities=25% Similarity=0.346 Sum_probs=111.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccChH
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNT 274 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~ 274 (482)
.|.+|++++|.+.+...- ..+.+.+.. ..-.+++|||||||||||+|+.||+.++.+|..++...- +..
T Consensus 19 RP~~lde~vGQ~HLlg~~-~~lrr~v~~---------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-gvk 87 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEG-KPLRRAVEA---------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-GVK 87 (436)
T ss_pred CCCCHHHhcChHhhhCCC-chHHHHHhc---------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-cHH
Confidence 589999999987765321 122222221 123479999999999999999999999999998876543 567
Q ss_pred HHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhccc
Q 011573 275 ELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGL 348 (482)
Q Consensus 275 ~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 348 (482)
+++.++.++. ++.|||||||+.+- +.-...||-.++.
T Consensus 88 dlr~i~e~a~~~~~~gr~tiLflDEIHRfn------------------------------------K~QQD~lLp~vE~- 130 (436)
T COG2256 88 DLREIIEEARKNRLLGRRTILFLDEIHRFN------------------------------------KAQQDALLPHVEN- 130 (436)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEehhhhcC------------------------------------hhhhhhhhhhhcC-
Confidence 8888888762 57999999999961 2223347777664
Q ss_pred ccCCCCceEEEEec--CCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 349 WSACGGERLIVFTT--NYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 349 ~s~~~~~~iiI~TT--N~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
+.+++|++| |.--.|.|||+. |+- .+++...+.++.++++++-+.
T Consensus 131 -----G~iilIGATTENPsF~ln~ALlS--R~~-vf~lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 131 -----GTIILIGATTENPSFELNPALLS--RAR-VFELKPLSSEDIKKLLKRALL 177 (436)
T ss_pred -----CeEEEEeccCCCCCeeecHHHhh--hhh-eeeeecCCHHHHHHHHHHHHh
Confidence 347778744 566689999999 884 788999999999999988443
No 60
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.1e-14 Score=150.19 Aligned_cols=180 Identities=20% Similarity=0.250 Sum_probs=123.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC--------------
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY-------------- 260 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~-------------- 260 (482)
.|.+|++++|.+.+++.+.+.+.. | ..+..|||+||||||||++|+++|+.+++
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 688999999999988876544421 1 23568999999999999999999999863
Q ss_pred ----------ceeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCccccc
Q 011573 261 ----------DLYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKL 324 (482)
Q Consensus 261 ----------~i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 324 (482)
+++.++.++-.....++.++.... ...|++|||+|.+-
T Consensus 79 c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-------------------------- 132 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-------------------------- 132 (363)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------------------
Confidence 233333322223445666665431 35699999999852
Q ss_pred ccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccC
Q 011573 325 GKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIES 404 (482)
Q Consensus 325 ~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~ 404 (482)
....+.||..++.. +....+|++|+.++.|.+++.. |+ ..++|++++.++...+++..+..+.
T Consensus 133 ----------~~a~naLLk~lEe~----~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g 195 (363)
T PRK14961 133 ----------RHSFNALLKTLEEP----PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKES 195 (363)
T ss_pred ----------HHHHHHHHHHHhcC----CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 12445688888764 3446788888889999999998 88 5899999999999988888766544
Q ss_pred CCcH-HHHHHHhcCCCCCHHHHHHHh
Q 011573 405 HNLF-DKIGELLGEAKMTPADVAEHL 429 (482)
Q Consensus 405 ~~~~-~~i~~l~~~~~~s~adi~~~l 429 (482)
.... +.+..++..++-++.++...|
T Consensus 196 ~~i~~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 196 IDTDEYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3222 233334444444555544433
No 61
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.3e-14 Score=152.37 Aligned_cols=157 Identities=18% Similarity=0.337 Sum_probs=117.7
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc-----------
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD----------- 261 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~----------- 261 (482)
...|.+|++++|.+.+.+.+...+.. | ..+.+|||+||||||||++|+++|+.+++.
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~-----------~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILN-----------D-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 35799999999999888766543321 1 235689999999999999999999998652
Q ss_pred -----------------eeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCC
Q 011573 262 -----------------LYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDK 318 (482)
Q Consensus 262 -----------------i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~ 318 (482)
++.++..+-.+...++.++..+. ...|++|||+|.+-
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls-------------------- 141 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-------------------- 141 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------------
Confidence 23333333234567777776652 45799999999851
Q ss_pred CcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHH
Q 011573 319 DPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKN 398 (482)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~ 398 (482)
...++.||..|+.. +...++|++|+.++++++++.. |+ ..++|..++.++...+++.
T Consensus 142 ----------------~~a~naLLk~LEep----p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~ 198 (507)
T PRK06645 142 ----------------KGAFNALLKTLEEP----PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEY 198 (507)
T ss_pred ----------------HHHHHHHHHHHhhc----CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHH
Confidence 23466788888753 3457888888999999999998 88 4899999999999988888
Q ss_pred hccccC
Q 011573 399 YLNIES 404 (482)
Q Consensus 399 ~l~~~~ 404 (482)
.+..+.
T Consensus 199 i~~~eg 204 (507)
T PRK06645 199 ITKQEN 204 (507)
T ss_pred HHHHcC
Confidence 776543
No 62
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.5e-14 Score=154.64 Aligned_cols=156 Identities=17% Similarity=0.273 Sum_probs=118.4
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc------------
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD------------ 261 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~------------ 261 (482)
-.|.+|++|+|.+.+++.|.+.+.. | ..+..||||||||||||++|+++|+.+++.
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~-----------~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQ-----------Q-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHh-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 3689999999999998877655532 1 234689999999999999999999999653
Q ss_pred ------------eeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCcccc
Q 011573 262 ------------LYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQK 323 (482)
Q Consensus 262 ------------i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 323 (482)
++.++..+-..-+.++.++.... ...|++|||+|.+-
T Consensus 78 ~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------------------- 132 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------------------- 132 (509)
T ss_pred HHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-------------------------
Confidence 55555554445566777776542 34699999999862
Q ss_pred cccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcccc
Q 011573 324 LGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIE 403 (482)
Q Consensus 324 ~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~ 403 (482)
....+.||..|+.. ++..++|++|+.+.++.+.++. |+ ..++|..++.++....++..+..+
T Consensus 133 -----------~~a~naLLk~LEep----p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~e 194 (509)
T PRK14958 133 -----------GHSFNALLKTLEEP----PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEE 194 (509)
T ss_pred -----------HHHHHHHHHHHhcc----CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHc
Confidence 23467788888874 3457888888899999999988 88 488999998888877777776554
Q ss_pred C
Q 011573 404 S 404 (482)
Q Consensus 404 ~ 404 (482)
.
T Consensus 195 g 195 (509)
T PRK14958 195 N 195 (509)
T ss_pred C
Confidence 4
No 63
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=2.8e-14 Score=154.37 Aligned_cols=180 Identities=17% Similarity=0.283 Sum_probs=128.5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC--------------
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY-------------- 260 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~-------------- 260 (482)
.|.+|++|+|.+.+++.+.+.+.. | ..++.||||||||||||++|+++|..+++
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQ-----------G-KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 689999999999988877655542 1 23578999999999999999999998853
Q ss_pred ----------ceeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCccccc
Q 011573 261 ----------DLYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKL 324 (482)
Q Consensus 261 ----------~i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 324 (482)
+++.++..+-.+...++.+..... ..-|++|||+|.+-
T Consensus 79 C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt-------------------------- 132 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS-------------------------- 132 (559)
T ss_pred HHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------------------
Confidence 444555444344566777766542 45799999999862
Q ss_pred ccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccC
Q 011573 325 GKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIES 404 (482)
Q Consensus 325 ~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~ 404 (482)
...++.||..++.. +...++|++|+.++.|++++++ |+. .++|..|+.++....++..+....
T Consensus 133 ----------~~a~naLLKtLEep----p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~eg 195 (559)
T PRK05563 133 ----------TGAFNALLKTLEEP----PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEG 195 (559)
T ss_pred ----------HHHHHHHHHHhcCC----CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcC
Confidence 22466788888864 3457888888889999999998 885 789999999999888888776544
Q ss_pred CCcH-HHHHHHhcCCCCCHHHHHHHh
Q 011573 405 HNLF-DKIGELLGEAKMTPADVAEHL 429 (482)
Q Consensus 405 ~~~~-~~i~~l~~~~~~s~adi~~~l 429 (482)
.... +.+..++...+-++.+....|
T Consensus 196 i~i~~~al~~ia~~s~G~~R~al~~L 221 (559)
T PRK05563 196 IEYEDEALRLIARAAEGGMRDALSIL 221 (559)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3322 233333443344555544333
No 64
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.1e-14 Score=151.64 Aligned_cols=179 Identities=12% Similarity=0.215 Sum_probs=129.3
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhC--------------
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLG-------------- 259 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~-------------- 259 (482)
..|.+|++|+|.+.+++.+.+.+. .| ..+.+|||+||||||||++|+++|..++
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~-----------~~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFT-----------LN-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cC-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 368999999999988876643332 12 2357899999999999999999998763
Q ss_pred ----------CceeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCcccc
Q 011573 260 ----------YDLYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQK 323 (482)
Q Consensus 260 ----------~~i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 323 (482)
.+++.++.++-.+.+.++.++.... ..-|++|||+|.+-
T Consensus 75 ~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------------------- 129 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------------------- 129 (491)
T ss_pred HHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC-------------------------
Confidence 3456666665556667887776542 45799999999851
Q ss_pred cccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcccc
Q 011573 324 LGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIE 403 (482)
Q Consensus 324 ~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~ 403 (482)
...++.||..|+.. ++..++|++|+.+++|.+.++. |+. .++|..++.++....+...+..+
T Consensus 130 -----------~~A~NaLLK~LEeP----p~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~E 191 (491)
T PRK14964 130 -----------NSAFNALLKTLEEP----APHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKE 191 (491)
T ss_pred -----------HHHHHHHHHHHhCC----CCCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHc
Confidence 23567889998874 3457888999999999999998 884 79999999999888888877655
Q ss_pred CCCcH-HHHHHHhcCCCCCHHHHHH
Q 011573 404 SHNLF-DKIGELLGEAKMTPADVAE 427 (482)
Q Consensus 404 ~~~~~-~~i~~l~~~~~~s~adi~~ 427 (482)
..... +.+..++...+-+..++..
T Consensus 192 gi~i~~eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 192 NIEHDEESLKLIAENSSGSMRNALF 216 (491)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 43322 2333344444445554443
No 65
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.58 E-value=2.7e-14 Score=144.34 Aligned_cols=157 Identities=19% Similarity=0.198 Sum_probs=114.5
Q ss_pred CceeeeccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 187 NWVHVVFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 187 ~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
.|. ....|.+|+++++.++.++.+...+. .| ..+..+|||||||+|||++++++|++++.+++.++
T Consensus 10 ~w~--~kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~ 75 (316)
T PHA02544 10 MWE--QKYRPSTIDECILPAADKETFKSIVK-----------KG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVN 75 (316)
T ss_pred cce--eccCCCcHHHhcCcHHHHHHHHHHHh-----------cC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEec
Confidence 454 45679999999999999887765543 12 23467788999999999999999999999999998
Q ss_pred cccccChHHHHHHH----Hhc---CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHH
Q 011573 267 LTAVKDNTELRKLL----IET---SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLS 339 (482)
Q Consensus 267 l~~~~~~~~L~~l~----~~~---~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 339 (482)
++. .....++..+ ... ..+.+|+|||+|.+.. .....
T Consensus 76 ~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-----------------------------------~~~~~ 119 (316)
T PHA02544 76 GSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-----------------------------------ADAQR 119 (316)
T ss_pred cCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-----------------------------------HHHHH
Confidence 887 2233333322 222 3578999999998510 01123
Q ss_pred HHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhc
Q 011573 340 GLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYL 400 (482)
Q Consensus 340 ~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l 400 (482)
.|.+.++... ....+|+|||.+..++|+|++ ||. .+.|+.|+.+++..+++.++
T Consensus 120 ~L~~~le~~~----~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 120 HLRSFMEAYS----KNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHHHHHhcC----CCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 3445566542 346788999999999999999 996 88999999999887776543
No 66
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.58 E-value=1.6e-14 Score=138.99 Aligned_cols=166 Identities=21% Similarity=0.225 Sum_probs=128.4
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccCh
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDN 273 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~ 273 (482)
-.|..|++.+|.+++|+++.-.+..-..+ + ..-..+|||||||.||||||..||+++|.++-..+-..+...
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~-e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~ 91 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKR-------G-EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP 91 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhc-------C-CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh
Confidence 36889999999999998875444332221 1 234679999999999999999999999999998888888888
Q ss_pred HHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhccc-----
Q 011573 274 TELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGL----- 348 (482)
Q Consensus 274 ~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~----- 348 (482)
..|..++......-|||||||+.+.+ ..-.-|..+|+.+
T Consensus 92 gDlaaiLt~Le~~DVLFIDEIHrl~~------------------------------------~vEE~LYpaMEDf~lDI~ 135 (332)
T COG2255 92 GDLAAILTNLEEGDVLFIDEIHRLSP------------------------------------AVEEVLYPAMEDFRLDII 135 (332)
T ss_pred hhHHHHHhcCCcCCeEEEehhhhcCh------------------------------------hHHHHhhhhhhheeEEEE
Confidence 99999999999999999999999631 1111123333321
Q ss_pred ---ccCCC------CceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCC
Q 011573 349 ---WSACG------GERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESH 405 (482)
Q Consensus 349 ---~s~~~------~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~ 405 (482)
-.+.. .+.-+|++|.+...|...|+. ||.+...+.+.+.++...|+++.-...+.
T Consensus 136 IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i 199 (332)
T COG2255 136 IGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGI 199 (332)
T ss_pred EccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCC
Confidence 00100 234699999999999999999 99999999999999999999987654443
No 67
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.58 E-value=6.3e-15 Score=164.75 Aligned_cols=158 Identities=23% Similarity=0.312 Sum_probs=115.5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----------CCceee
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----------GYDLYD 264 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----------~~~i~~ 264 (482)
.|..++.++|.++..+.+++.+.. .-+.++||+||||||||++++++|..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 456788999988877776644422 125689999999999999999999987 788999
Q ss_pred cccccccC--------hHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccch
Q 011573 265 LELTAVKD--------NTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNS 334 (482)
Q Consensus 265 l~l~~~~~--------~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (482)
++++.+.. +..++.+|..+. .++||||||||.++.. |... +..
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~-g~~~--------------------------~~~ 296 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGA-GATS--------------------------GGS 296 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhcc-CCCC--------------------------Ccc
Confidence 88776632 357889998764 5899999999998631 1100 000
Q ss_pred HHHHHHHHhhhcccccCCCCceEEEEecCCcC-----cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 335 QVTLSGLLNFIDGLWSACGGERLIVFTTNYIE-----KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 335 ~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~-----~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
....+-|+..+. .+++.+|++||..+ .+|+||.| ||. .|+++.|+.+++..|++....
T Consensus 297 ~~~~~~L~~~l~------~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 297 MDASNLLKPALS------SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred HHHHHHHHHHHh------CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHH
Confidence 111122334433 24578899888744 47999999 997 799999999999999996654
No 68
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.58 E-value=3.2e-14 Score=149.20 Aligned_cols=153 Identities=24% Similarity=0.318 Sum_probs=110.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccCh
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDN 273 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~ 273 (482)
-.|.+|++++|.+.+... ...+...+.. ....++||+||||||||++|+++|+.++.+++.++.... +.
T Consensus 6 ~RP~~l~d~vGq~~~v~~-~~~L~~~i~~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-~~ 74 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGP-GKPLRRMIEA---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-GV 74 (413)
T ss_pred hCCCCHHHhcCcHHHhCc-chHHHHHHHc---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-cH
Confidence 468999999999877544 1112222222 123479999999999999999999999999998877643 34
Q ss_pred HHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcc
Q 011573 274 TELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDG 347 (482)
Q Consensus 274 ~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg 347 (482)
..++.++..+. .+.||||||||.+. ......||..++.
T Consensus 75 ~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~------------------------------------~~~q~~LL~~le~ 118 (413)
T PRK13342 75 KDLREVIEEARQRRSAGRRTILFIDEIHRFN------------------------------------KAQQDALLPHVED 118 (413)
T ss_pred HHHHHHHHHHHHhhhcCCceEEEEechhhhC------------------------------------HHHHHHHHHHhhc
Confidence 45666665542 67899999999862 1123456666654
Q ss_pred cccCCCCceEEEEec--CCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 348 LWSACGGERLIVFTT--NYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 348 ~~s~~~~~~iiI~TT--N~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
+.+++|++| |....++++|++ |+ ..+.|+.++.++...+++..+..
T Consensus 119 ------~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 119 ------GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred ------CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 235666554 445689999999 88 58999999999999999987653
No 69
>PLN03025 replication factor C subunit; Provisional
Probab=99.58 E-value=3.8e-14 Score=143.73 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=110.5
Q ss_pred eccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC-----ceeecc
Q 011573 192 VFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY-----DLYDLE 266 (482)
Q Consensus 192 ~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~-----~i~~l~ 266 (482)
....|.+|+++++.+++.+.|... +.. |. ...+|||||||||||++|+++|+++.. .++.++
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~----~~~-------~~--~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln 71 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVI----ARD-------GN--MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN 71 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHH----Hhc-------CC--CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec
Confidence 356899999999999877766432 221 11 135999999999999999999999832 345555
Q ss_pred cccccChHHHHHHHHh---c------CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHH
Q 011573 267 LTAVKDNTELRKLLIE---T------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVT 337 (482)
Q Consensus 267 l~~~~~~~~L~~l~~~---~------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (482)
.++..+...++..+.. . ....|++|||+|.+. ...
T Consensus 72 ~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt------------------------------------~~a 115 (319)
T PLN03025 72 ASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT------------------------------------SGA 115 (319)
T ss_pred ccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC------------------------------------HHH
Confidence 5544444445544322 1 235799999999862 112
Q ss_pred HHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccC
Q 011573 338 LSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIES 404 (482)
Q Consensus 338 ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~ 404 (482)
...|+..|+... ....+|++||....+.++|+. |+. .++|+.|+.++....++.....+.
T Consensus 116 q~aL~~~lE~~~----~~t~~il~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~eg 175 (319)
T PLN03025 116 QQALRRTMEIYS----NTTRFALACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEAEK 175 (319)
T ss_pred HHHHHHHHhccc----CCceEEEEeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHHcC
Confidence 345677776432 234688899999999999998 884 899999999998888887765443
No 70
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.57 E-value=5.1e-14 Score=144.48 Aligned_cols=180 Identities=16% Similarity=0.289 Sum_probs=125.1
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc------------
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD------------ 261 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~------------ 261 (482)
..|.+|++++|.+.+++.+...+.. | ..+..||||||||+|||++++++|..+..+
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 4689999999999998877655531 2 235689999999999999999999987532
Q ss_pred ------------eeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCcccc
Q 011573 262 ------------LYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQK 323 (482)
Q Consensus 262 ------------i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 323 (482)
++.++-........++.++..+. .+-||+|||+|.+-
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------------------- 130 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------------------- 130 (355)
T ss_pred HHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-------------------------
Confidence 22232222223345666666542 34699999999851
Q ss_pred cccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcccc
Q 011573 324 LGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIE 403 (482)
Q Consensus 324 ~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~ 403 (482)
....+.||..++.. +...++|++||+++.|.+++.+ |+. .++|+.|+.++...++..++...
T Consensus 131 -----------~~~~~~Ll~~le~~----~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~ 192 (355)
T TIGR02397 131 -----------KSAFNALLKTLEEP----PEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKE 192 (355)
T ss_pred -----------HHHHHHHHHHHhCC----ccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHc
Confidence 12456688888763 3457888889999999999998 885 89999999999999998877654
Q ss_pred CCCcH-HHHHHHhcCCCCCHHHHHHH
Q 011573 404 SHNLF-DKIGELLGEAKMTPADVAEH 428 (482)
Q Consensus 404 ~~~~~-~~i~~l~~~~~~s~adi~~~ 428 (482)
..... +.+..++...+-++..+...
T Consensus 193 g~~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 193 GIKIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred CCCCCHHHHHHHHHHcCCChHHHHHH
Confidence 43332 33344444444455555443
No 71
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.4e-14 Score=152.66 Aligned_cols=187 Identities=21% Similarity=0.257 Sum_probs=134.2
Q ss_pred HHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc------cChHHHHHHHHhcC--CC
Q 011573 215 DLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV------KDNTELRKLLIETS--SK 286 (482)
Q Consensus 215 ~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~------~~~~~L~~l~~~~~--~~ 286 (482)
.+..++.-+..-...++...-.+||||+||||||++++++|.++|.+++.++|.++ .++.++...|..+. +|
T Consensus 412 ~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~p 491 (953)
T KOG0736|consen 412 ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSP 491 (953)
T ss_pred HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCc
Confidence 34444433322223344455679999999999999999999999999999999887 35678888898875 79
Q ss_pred eEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcC
Q 011573 287 SIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIE 366 (482)
Q Consensus 287 sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~ 366 (482)
+|||+-++|.+. +.+. ++........+..++. +|.+... ....|+|+||+..+
T Consensus 492 avifl~~~dvl~--id~d-----------------------gged~rl~~~i~~~ls-~e~~~~~-~~~~ivv~t~~s~~ 544 (953)
T KOG0736|consen 492 AVLFLRNLDVLG--IDQD-----------------------GGEDARLLKVIRHLLS-NEDFKFS-CPPVIVVATTSSIE 544 (953)
T ss_pred eEEEEeccceee--ecCC-----------------------CchhHHHHHHHHHHHh-cccccCC-CCceEEEEeccccc
Confidence 999999999863 1110 1111112233344444 3444322 35689999999999
Q ss_pred cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHHHHHhc
Q 011573 367 KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADVAEHLM 430 (482)
Q Consensus 367 ~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi~~~l~ 430 (482)
.|++.+.+ -|-..|.++.|+.++|.+|++.|+.............++. ..|||.+++..+..
T Consensus 545 ~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~ 607 (953)
T KOG0736|consen 545 DLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVA 607 (953)
T ss_pred cCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhc
Confidence 99999999 7878999999999999999999987554333334455555 45999999985544
No 72
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.57 E-value=6.2e-14 Score=131.99 Aligned_cols=176 Identities=18% Similarity=0.260 Sum_probs=144.0
Q ss_pred CCceeeeccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCce
Q 011573 186 SNWVHVVFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDL 262 (482)
Q Consensus 186 ~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i 262 (482)
+...+++-.+|..+.+|+|-+.+|+.+++....|+.. -+-..+||||..||||||+++|+-+++ +..+
T Consensus 46 ~~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G---------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrL 116 (287)
T COG2607 46 GYLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAEG---------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRL 116 (287)
T ss_pred CcccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcC---------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeE
Confidence 3456677778899999999999999999999999876 245789999999999999999999887 6788
Q ss_pred eecccccccChHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHH
Q 011573 263 YDLELTAVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLL 342 (482)
Q Consensus 263 ~~l~l~~~~~~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 342 (482)
+.++-.++.+-..|..++...+.+.|||+||+-- + ........|-
T Consensus 117 VEV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSF--e---------------------------------~gd~~yK~LK 161 (287)
T COG2607 117 VEVDKEDLATLPDLVELLRARPEKFILFCDDLSF--E---------------------------------EGDDAYKALK 161 (287)
T ss_pred EEEcHHHHhhHHHHHHHHhcCCceEEEEecCCCC--C---------------------------------CCchHHHHHH
Confidence 8888888888888999999999999999999643 1 0112445577
Q ss_pred hhhcccccCCCCceEEEEecCCcCcCCHhhh--------------------cCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 343 NFIDGLWSACGGERLIVFTTNYIEKLDPALI--------------------RKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 343 ~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~--------------------RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
..|||-.+..+.+++|.+|+|+...|+.-+. =..||...+.|..|+.++..+|+.+|...
T Consensus 162 s~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~ 241 (287)
T COG2607 162 SALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKH 241 (287)
T ss_pred HHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHH
Confidence 8899888877889999999998766653222 12399999999999999999999999765
Q ss_pred cCC
Q 011573 403 ESH 405 (482)
Q Consensus 403 ~~~ 405 (482)
...
T Consensus 242 ~~l 244 (287)
T COG2607 242 FGL 244 (287)
T ss_pred cCC
Confidence 443
No 73
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.57 E-value=3.8e-14 Score=139.73 Aligned_cols=145 Identities=20% Similarity=0.219 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHH---------
Q 011573 207 AEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELR--------- 277 (482)
Q Consensus 207 ~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~--------- 277 (482)
...+++++.+..++.. .+.+||+||||||||++|+++|..+|.+++.+++..-.+...+-
T Consensus 5 ~~~~~l~~~~l~~l~~-----------g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~ 73 (262)
T TIGR02640 5 DAVKRVTSRALRYLKS-----------GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRK 73 (262)
T ss_pred HHHHHHHHHHHHHHhc-----------CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchh
Confidence 3455666666666654 46899999999999999999999999999998876532222110
Q ss_pred ------------------------HHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccc
Q 011573 278 ------------------------KLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNN 333 (482)
Q Consensus 278 ------------------------~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (482)
.++.....+.+|+|||||.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~------------------------------------ 117 (262)
T TIGR02640 74 KVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRS------------------------------------ 117 (262)
T ss_pred hHHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhC------------------------------------
Confidence 12222345689999999984
Q ss_pred hHHHHHHHHhhhcccc-cC-----------CCCceEEEEecCCcC-----cCCHhhhcCCCeeeEEEccCCCHHHHHHHH
Q 011573 334 SQVTLSGLLNFIDGLW-SA-----------CGGERLIVFTTNYIE-----KLDPALIRKGRMDKHIELSHCSYEAFKVLA 396 (482)
Q Consensus 334 ~~~~ls~LL~~ldg~~-s~-----------~~~~~iiI~TTN~~~-----~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~ 396 (482)
...+.+.|+..|+.-. .- ...+..+|+|+|... .+++||++ || ..+.+++|+.+...+|+
T Consensus 118 ~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il 194 (262)
T TIGR02640 118 KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAIL 194 (262)
T ss_pred CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHH
Confidence 1235566777665311 00 012346899999763 57999999 99 69999999999999999
Q ss_pred HHhcc
Q 011573 397 KNYLN 401 (482)
Q Consensus 397 ~~~l~ 401 (482)
+...+
T Consensus 195 ~~~~~ 199 (262)
T TIGR02640 195 RAKTD 199 (262)
T ss_pred HHhhC
Confidence 98764
No 74
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=3.6e-14 Score=153.67 Aligned_cols=180 Identities=17% Similarity=0.217 Sum_probs=127.3
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc------------
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD------------ 261 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~------------ 261 (482)
-.|.+|++|+|.+.+++.|.+.+.. ...+.+|||+||||||||++++++|+.+++.
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 3689999999999988877655432 1335789999999999999999999998653
Q ss_pred ------------eeecccccccChHHHHHHHHhc------CCCeEEEEeCCcccccccccccccccccccCCCCCCcccc
Q 011573 262 ------------LYDLELTAVKDNTELRKLLIET------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQK 323 (482)
Q Consensus 262 ------------i~~l~l~~~~~~~~L~~l~~~~------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 323 (482)
++.++..+-.....++.++... ....||||||+|.+-
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------------------- 132 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------------------- 132 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-------------------------
Confidence 2233333333445677777643 245799999999751
Q ss_pred cccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcccc
Q 011573 324 LGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIE 403 (482)
Q Consensus 324 ~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~ 403 (482)
...++.||..|+.. .+..++|++||.+.++.+.++. || ..+.|..++.++....++..+..+
T Consensus 133 -----------~~A~NALLKtLEEP----p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kE 194 (709)
T PRK08691 133 -----------KSAFNAMLKTLEEP----PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSE 194 (709)
T ss_pred -----------HHHHHHHHHHHHhC----CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHc
Confidence 23456788888864 2447888899999999999987 88 589999999999988888887755
Q ss_pred CCCcH-HHHHHHhcCCCCCHHHHHHH
Q 011573 404 SHNLF-DKIGELLGEAKMTPADVAEH 428 (482)
Q Consensus 404 ~~~~~-~~i~~l~~~~~~s~adi~~~ 428 (482)
..... ..+..++...+-+..++...
T Consensus 195 gi~id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 195 KIAYEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred CCCcCHHHHHHHHHHhCCCHHHHHHH
Confidence 43222 22333443334444444433
No 75
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=5.9e-14 Score=152.42 Aligned_cols=154 Identities=19% Similarity=0.309 Sum_probs=116.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc-------------
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD------------- 261 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~------------- 261 (482)
.|.+|++|+|.+.+++.|.+.+.. | ..+..|||+||||||||++|+++|+.+++.
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 689999999999988877544431 1 235679999999999999999999998762
Q ss_pred -----------eeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCccccc
Q 011573 262 -----------LYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKL 324 (482)
Q Consensus 262 -----------i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 324 (482)
++.++..+-...+.++++..... ..-|+||||+|.+
T Consensus 79 C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L--------------------------- 131 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML--------------------------- 131 (647)
T ss_pred HHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC---------------------------
Confidence 33344332223455676665532 4569999999986
Q ss_pred ccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcccc
Q 011573 325 GKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIE 403 (482)
Q Consensus 325 ~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~ 403 (482)
+....+.||..|+.- ++..++|++|+.+..|.+.++. |+ ..++|..++.++....++..+..+
T Consensus 132 ---------s~~a~NALLKtLEEP----p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e 194 (647)
T PRK07994 132 ---------SRHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAE 194 (647)
T ss_pred ---------CHHHHHHHHHHHHcC----CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHc
Confidence 234677899998874 3557888888899999999998 88 699999999999988888776443
No 76
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=8.4e-14 Score=148.59 Aligned_cols=156 Identities=19% Similarity=0.371 Sum_probs=115.1
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC-------------
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY------------- 260 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~------------- 260 (482)
-.|.+|++|+|.+.+++.|...+.. + ..+..||||||||||||++|+++|+.+.+
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~-----------~-~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ-----------G-RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 3689999999999888777554432 1 23456899999999999999999999853
Q ss_pred ----------ceeecccccccChHHHHHHHHhc------CCCeEEEEeCCcccccccccccccccccccCCCCCCccccc
Q 011573 261 ----------DLYDLELTAVKDNTELRKLLIET------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKL 324 (482)
Q Consensus 261 ----------~i~~l~l~~~~~~~~L~~l~~~~------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 324 (482)
+++.++..+......++.+...+ ..+.||||||+|.+
T Consensus 76 c~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l--------------------------- 128 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM--------------------------- 128 (504)
T ss_pred hHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECcccc---------------------------
Confidence 24444443333344555554332 25679999999974
Q ss_pred ccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccC
Q 011573 325 GKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIES 404 (482)
Q Consensus 325 ~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~ 404 (482)
....++.||..|+.. +...++|++||.+..+.+++.. |+. +++|..++.++....++..+..+.
T Consensus 129 ---------s~~a~naLLk~LEep----~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~eg 192 (504)
T PRK14963 129 ---------SKSAFNALLKTLEEP----PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEG 192 (504)
T ss_pred ---------CHHHHHHHHHHHHhC----CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcC
Confidence 123567788888764 3457888889999999999998 885 899999999999888888765443
No 77
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=5.6e-14 Score=150.69 Aligned_cols=156 Identities=17% Similarity=0.333 Sum_probs=115.0
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC------------
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY------------ 260 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~------------ 260 (482)
...|.+|++++|.+.+++.+.+.+.. | ..+++|||+||||||||++|+++|..+.+
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILN-----------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 34799999999999988777554321 1 23478999999999999999999999853
Q ss_pred ------------ceeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCccc
Q 011573 261 ------------DLYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQ 322 (482)
Q Consensus 261 ------------~i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~ 322 (482)
+++.++..+......++.+..... ...|++|||+|.+-
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt------------------------ 132 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS------------------------ 132 (605)
T ss_pred HHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC------------------------
Confidence 334444333233455666655432 35699999999851
Q ss_pred ccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 323 KLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 323 ~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
....+.||..|+.. ++..++|++|+.+..|.+++++ |+. .++|+.++.++....+...+..
T Consensus 133 ------------~~A~NaLLKtLEEP----p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~k 193 (605)
T PRK05896 133 ------------TSAWNALLKTLEEP----PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKK 193 (605)
T ss_pred ------------HHHHHHHHHHHHhC----CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHH
Confidence 11346788888864 3457888888999999999999 886 8999999999988888876654
Q ss_pred c
Q 011573 403 E 403 (482)
Q Consensus 403 ~ 403 (482)
+
T Consensus 194 e 194 (605)
T PRK05896 194 E 194 (605)
T ss_pred c
Confidence 3
No 78
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.56 E-value=1.3e-13 Score=142.79 Aligned_cols=155 Identities=23% Similarity=0.269 Sum_probs=113.1
Q ss_pred CccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc----------------
Q 011573 198 TFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD---------------- 261 (482)
Q Consensus 198 ~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~---------------- 261 (482)
.|++|+|.+.+++.|.+.+..... .+...+.+.+.+|||+||||+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 588999999999988777654322 2344555567899999999999999999999987553
Q ss_pred -------eeecccccc-cChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccc
Q 011573 262 -------LYDLELTAV-KDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKE 327 (482)
Q Consensus 262 -------i~~l~l~~~-~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 327 (482)
++.+..... ..-..++.++..+. ...|++|||+|.+-
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~----------------------------- 130 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT----------------------------- 130 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----------------------------
Confidence 222222111 23456777776542 35699999999962
Q ss_pred cccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHH
Q 011573 328 ERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKN 398 (482)
Q Consensus 328 ~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~ 398 (482)
....+.||..|+.. +.+.++|++|++++.|+|++++ |+ ..|.|+.|+.++..+.+..
T Consensus 131 -------~~aanaLLk~LEep----~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 131 -------ERAANALLKAVEEP----PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred -------HHHHHHHHHHhhcC----CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH
Confidence 12346688888764 3446777777779999999999 88 5999999999988877764
No 79
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4.1e-14 Score=149.72 Aligned_cols=193 Identities=18% Similarity=0.248 Sum_probs=133.4
Q ss_pred cccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC----ceeecccccccC--h
Q 011573 200 QTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY----DLYDLELTAVKD--N 273 (482)
Q Consensus 200 ~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~----~i~~l~l~~~~~--~ 273 (482)
.+++..+..|+...++...+ +.....+||+||+|||||.|++++++++.. .+..++|+.+.. -
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 56677777777665532222 344567999999999999999999999854 344678887742 2
Q ss_pred HH----HHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcc
Q 011573 274 TE----LRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDG 347 (482)
Q Consensus 274 ~~----L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg 347 (482)
.. |+.+|..+ ..|+||++||+||++...+. ..+..+.....+..+||.+-.
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~-----------------------e~~q~~~~~~rla~flnqvi~ 533 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN-----------------------ENGQDGVVSERLAAFLNQVIK 533 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcc-----------------------cCCcchHHHHHHHHHHHHHHH
Confidence 33 44445444 48999999999998631111 111222233445556644322
Q ss_pred cccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccC-CCcHHHHHHHhc-CCCCCHHHH
Q 011573 348 LWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIES-HNLFDKIGELLG-EAKMTPADV 425 (482)
Q Consensus 348 ~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~-~~~~~~i~~l~~-~~~~s~adi 425 (482)
.....+..+.+|+|.+....|+|-|..|++|+.++.++.|...+|..|+++.+.... ....+++.-+.. +.||.+.|+
T Consensus 534 ~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL 613 (952)
T KOG0735|consen 534 IYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDL 613 (952)
T ss_pred HHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhH
Confidence 222223346789999999999999999999999999999999999999999886432 234455555555 459999998
Q ss_pred H
Q 011573 426 A 426 (482)
Q Consensus 426 ~ 426 (482)
.
T Consensus 614 ~ 614 (952)
T KOG0735|consen 614 V 614 (952)
T ss_pred H
Confidence 6
No 80
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=8.9e-14 Score=153.46 Aligned_cols=155 Identities=17% Similarity=0.282 Sum_probs=114.4
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCce-----------
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDL----------- 262 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i----------- 262 (482)
-.|.+|++|+|.+.+++.|.+.+. . | ..+..||||||||||||++|+++|+.+++.-
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~----~-------~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALT----Q-------Q-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH----h-------C-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 368999999999998887654432 1 1 2356799999999999999999999997631
Q ss_pred -------------eecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCcccc
Q 011573 263 -------------YDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQK 323 (482)
Q Consensus 263 -------------~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 323 (482)
+.++..+......++.+..... ..-|+||||+|.+
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-------------------------- 131 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-------------------------- 131 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc--------------------------
Confidence 1122221122345666654432 3579999999986
Q ss_pred cccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcccc
Q 011573 324 LGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIE 403 (482)
Q Consensus 324 ~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~ 403 (482)
....++.||..|+.. ++..++|++|+.+.+|.+.|+. |+ .++.|..++.++....++..+..+
T Consensus 132 ----------T~eAqNALLKtLEEP----P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~E 194 (944)
T PRK14949 132 ----------SRSSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQE 194 (944)
T ss_pred ----------CHHHHHHHHHHHhcc----CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHc
Confidence 234678899999874 3457788888889999999998 88 589999999999988888877544
No 81
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=4.9e-14 Score=152.72 Aligned_cols=180 Identities=17% Similarity=0.222 Sum_probs=126.4
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC-------------
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY------------- 260 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~------------- 260 (482)
..|.+|++++|.+.+++.|.+.+. . | ..+..||||||+|||||++++++|+.+++
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~----~-------~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALT----Q-------Q-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 368999999999888776654432 1 1 23467999999999999999999999875
Q ss_pred ----------------ceeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCC
Q 011573 261 ----------------DLYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDK 318 (482)
Q Consensus 261 ----------------~i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~ 318 (482)
+++.++..+-..-+.+++++.... ..-|++|||+|.+-
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls-------------------- 137 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT-------------------- 137 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------------------
Confidence 234444333334456777776542 34699999999862
Q ss_pred CcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHH
Q 011573 319 DPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKN 398 (482)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~ 398 (482)
...++.||..|+.. .+..++|++|+.+.++.+.++. |+ .+++|..++.++....++.
T Consensus 138 ----------------~~a~NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~ 194 (618)
T PRK14951 138 ----------------NTAFNAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQ 194 (618)
T ss_pred ----------------HHHHHHHHHhcccC----CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHH
Confidence 23467788888764 3457888888889999999888 88 5999999999998888887
Q ss_pred hccccCCCcHH-HHHHHhcCCCCCHHHHHHH
Q 011573 399 YLNIESHNLFD-KIGELLGEAKMTPADVAEH 428 (482)
Q Consensus 399 ~l~~~~~~~~~-~i~~l~~~~~~s~adi~~~ 428 (482)
.+..+.....+ .+..++...+-+..++...
T Consensus 195 i~~~egi~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 195 VLAAENVPAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 77654433322 2344444444455555443
No 82
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=8.2e-14 Score=152.17 Aligned_cols=156 Identities=17% Similarity=0.316 Sum_probs=115.5
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc-----------
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD----------- 261 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~----------- 261 (482)
...|.+|++|+|.+.+++.+...+.. | ..+..||||||||||||++|+++|..+.+.
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKS-----------N-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 34789999999999988877665542 1 245789999999999999999999988652
Q ss_pred ----------eeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCcccccc
Q 011573 262 ----------LYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLG 325 (482)
Q Consensus 262 ----------i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 325 (482)
++.++..+-.+...++.+..... ...|++|||+|.+-
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------------------------- 131 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------------------------- 131 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC---------------------------
Confidence 12222211122445666655442 45799999999852
Q ss_pred cccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcccc
Q 011573 326 KEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIE 403 (482)
Q Consensus 326 ~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~ 403 (482)
...++.||..|+.. ++..++|++|+.++.|+++++. |+. +++|..++.++....+...+..+
T Consensus 132 ---------~~A~NALLKtLEEP----P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~ke 193 (725)
T PRK07133 132 ---------KSAFNALLKTLEEP----PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKE 193 (725)
T ss_pred ---------HHHHHHHHHHhhcC----CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHc
Confidence 12467789888874 3457888888999999999999 885 89999999999888887765443
No 83
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=6.2e-14 Score=150.69 Aligned_cols=155 Identities=17% Similarity=0.296 Sum_probs=116.1
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC--------------
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY-------------- 260 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~-------------- 260 (482)
.|.+|++|+|.+.+++.+.+.+.. ...+..||||||||||||++|+++|+.+++
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 688999999999988877655432 123468999999999999999999999865
Q ss_pred ----------ceeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCccccc
Q 011573 261 ----------DLYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKL 324 (482)
Q Consensus 261 ----------~i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 324 (482)
+++.++.++-.....++.++..+. ...|++|||+|.+-
T Consensus 79 C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls-------------------------- 132 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS-------------------------- 132 (527)
T ss_pred HHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------------------
Confidence 233344333234456777766542 35799999999862
Q ss_pred ccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccC
Q 011573 325 GKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIES 404 (482)
Q Consensus 325 ~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~ 404 (482)
....+.||..|+.. ++..++|++|+.+..+.+.++. |+ ..++|..++.++....+...+..+.
T Consensus 133 ----------~~a~naLLK~LEep----p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~eg 195 (527)
T PRK14969 133 ----------KSAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQEN 195 (527)
T ss_pred ----------HHHHHHHHHHHhCC----CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 23456789888874 3457888888889999989888 88 5999999999998888877765443
No 84
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.9e-13 Score=141.32 Aligned_cols=155 Identities=15% Similarity=0.318 Sum_probs=113.0
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC------------c
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY------------D 261 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~------------~ 261 (482)
..|.+|++++|.+..++.+.+.+.. | ..+.+||||||||+|||++++++|+.++. .
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 4789999999999888776555532 1 34578999999999999999999998854 2
Q ss_pred eeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchH
Q 011573 262 LYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQ 335 (482)
Q Consensus 262 i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (482)
++.++.....+...++.++..+. .+.||+|||+|.+. .
T Consensus 79 ~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~------------------------------------~ 122 (367)
T PRK14970 79 IFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS------------------------------------S 122 (367)
T ss_pred eEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC------------------------------------H
Confidence 23333222233466777776432 45799999999752 1
Q ss_pred HHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcccc
Q 011573 336 VTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIE 403 (482)
Q Consensus 336 ~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~ 403 (482)
..++.|+..++.. +...++|++|+.+..+.+++.+ |+. .++++.|+.++...++...+...
T Consensus 123 ~~~~~ll~~le~~----~~~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~ 183 (367)
T PRK14970 123 AAFNAFLKTLEEP----PAHAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKE 183 (367)
T ss_pred HHHHHHHHHHhCC----CCceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHc
Confidence 2356788888763 2346788888889999999998 774 68999999998888877765443
No 85
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.54 E-value=2.1e-14 Score=139.61 Aligned_cols=155 Identities=21% Similarity=0.324 Sum_probs=109.2
Q ss_pred eccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc------eeec
Q 011573 192 VFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD------LYDL 265 (482)
Q Consensus 192 ~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~------i~~l 265 (482)
....|.+|+++++.+.+.+.+.+.+.. -. -..|||||||||||||.|.|+|.+++.+ +..+
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~-~~------------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR-RI------------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh-cC------------CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 456899999999999999988777654 11 2479999999999999999999999662 2233
Q ss_pred cccccc----------ChHHHHHHHHh-cC----CCeEEEEeCCcccccccccccccccccccCCCCCCccccccccccc
Q 011573 266 ELTAVK----------DNTELRKLLIE-TS----SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERE 330 (482)
Q Consensus 266 ~l~~~~----------~~~~L~~l~~~-~~----~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (482)
+.+.-. +...+...... .+ ..-|++|||.|.+-
T Consensus 95 naSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-------------------------------- 142 (346)
T KOG0989|consen 95 NASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-------------------------------- 142 (346)
T ss_pred cccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh--------------------------------
Confidence 333221 11222222210 11 22699999999862
Q ss_pred ccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 331 TNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 331 ~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
....+.|.+.||... ....+|+.||++++|.+.+.. |+. ++.|+....+.....++..-..
T Consensus 143 ----sdaq~aLrr~mE~~s----~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~ 203 (346)
T KOG0989|consen 143 ----SDAQAALRRTMEDFS----RTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASK 203 (346)
T ss_pred ----HHHHHHHHHHHhccc----cceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHH
Confidence 346778999999852 347899999999999999999 996 8888877665555555544443
No 86
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.1e-13 Score=154.83 Aligned_cols=156 Identities=19% Similarity=0.271 Sum_probs=115.6
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC------------
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY------------ 260 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~------------ 260 (482)
...|.+|++|+|.+.+++.|...+.. | .....||||||+|||||+++++||+.|++
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 44789999999999988877555431 1 23467999999999999999999999964
Q ss_pred --------------ceeecccccccChHHHHHHHHhc------CCCeEEEEeCCcccccccccccccccccccCCCCCCc
Q 011573 261 --------------DLYDLELTAVKDNTELRKLLIET------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDP 320 (482)
Q Consensus 261 --------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~ 320 (482)
+++.++-.+...-+.++.+.... ...-|+||||+|.+-
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt---------------------- 133 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT---------------------- 133 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC----------------------
Confidence 23333332222345556554332 255799999999962
Q ss_pred ccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhc
Q 011573 321 RQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYL 400 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l 400 (482)
....+.||+.|+.. ....+||++|+.+++|-++|+. |+. +++|..++.++...+++..+
T Consensus 134 --------------~~a~NaLLK~LEEp----P~~~~fIl~tt~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il 192 (824)
T PRK07764 134 --------------PQGFNALLKIVEEP----PEHLKFIFATTEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERIC 192 (824)
T ss_pred --------------HHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHH
Confidence 23466799999875 3457889989999999999998 884 89999999999888888876
Q ss_pred ccc
Q 011573 401 NIE 403 (482)
Q Consensus 401 ~~~ 403 (482)
..+
T Consensus 193 ~~E 195 (824)
T PRK07764 193 AQE 195 (824)
T ss_pred HHc
Confidence 543
No 87
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.6e-13 Score=146.92 Aligned_cols=155 Identities=19% Similarity=0.298 Sum_probs=113.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC--------------
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY-------------- 260 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~-------------- 260 (482)
.|.+|++++|.+.+++.+...+.. | ..+..|||+||||||||++|+++|+.+++
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~-----------~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALET-----------Q-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 688999999999988877544421 1 23457999999999999999999998864
Q ss_pred ----------ceeecccccccChHHHHHHHHhc------CCCeEEEEeCCcccccccccccccccccccCCCCCCccccc
Q 011573 261 ----------DLYDLELTAVKDNTELRKLLIET------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKL 324 (482)
Q Consensus 261 ----------~i~~l~l~~~~~~~~L~~l~~~~------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 324 (482)
+++.++..+......++.++... ...-|++|||+|.+-
T Consensus 79 C~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls-------------------------- 132 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS-------------------------- 132 (546)
T ss_pred HHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------------------------
Confidence 33344432222334555555443 246799999999851
Q ss_pred ccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccC
Q 011573 325 GKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIES 404 (482)
Q Consensus 325 ~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~ 404 (482)
....+.||..|+.. ++..++|++|+.+..+.++++. |+ ..++|..++.++....++..+..+.
T Consensus 133 ----------~~a~naLLK~LEep----p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~eg 195 (546)
T PRK14957 133 ----------KQSFNALLKTLEEP----PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKEN 195 (546)
T ss_pred ----------HHHHHHHHHHHhcC----CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcC
Confidence 23566789888864 3456778777788999999888 88 5999999999998888877665443
No 88
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.7e-13 Score=147.89 Aligned_cols=157 Identities=20% Similarity=0.317 Sum_probs=116.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC-------------
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY------------- 260 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~------------- 260 (482)
..|.+|++|+|.+.+++.|.+.+. . | ..+..||||||+|||||++|+++|+.+++
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~----~-------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALD----A-------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 368999999999988887655443 1 1 23457999999999999999999998863
Q ss_pred -------------ceeecccccccChHHHHHHHHhc------CCCeEEEEeCCcccccccccccccccccccCCCCCCcc
Q 011573 261 -------------DLYDLELTAVKDNTELRKLLIET------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPR 321 (482)
Q Consensus 261 -------------~i~~l~l~~~~~~~~L~~l~~~~------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~ 321 (482)
+++.++.++...-+.++.+.... ...-|++|||+|.+-
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt----------------------- 131 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT----------------------- 131 (584)
T ss_pred HHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC-----------------------
Confidence 23334443333345555554332 245799999999861
Q ss_pred cccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 322 QKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
....+.||..|+.. ++..++|++|+.+++|.++|+. |+ .+++|..++.++....+..++.
T Consensus 132 -------------~~A~NALLK~LEEp----p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~ 191 (584)
T PRK14952 132 -------------TAGFNALLKIVEEP----PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICE 191 (584)
T ss_pred -------------HHHHHHHHHHHhcC----CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHH
Confidence 22567789988874 3458889988999999999998 87 4899999999998888888776
Q ss_pred ccCC
Q 011573 402 IESH 405 (482)
Q Consensus 402 ~~~~ 405 (482)
.+..
T Consensus 192 ~egi 195 (584)
T PRK14952 192 QEGV 195 (584)
T ss_pred HcCC
Confidence 5443
No 89
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.53 E-value=9.1e-14 Score=155.30 Aligned_cols=157 Identities=23% Similarity=0.290 Sum_probs=114.3
Q ss_pred cccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHH-----
Q 011573 202 LAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTEL----- 276 (482)
Q Consensus 202 l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L----- 276 (482)
..|.+++|++|++.+...... +......++|+||||||||++++++|+.++.+++.++++.+.+...+
T Consensus 324 ~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred ccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 788899999998766543321 22233468999999999999999999999999999988876554333
Q ss_pred ----------HHHHHhcC-CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhh
Q 011573 277 ----------RKLLIETS-SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFI 345 (482)
Q Consensus 277 ----------~~l~~~~~-~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 345 (482)
.+.+..+. ...||+|||||.+.. .. .....+.||..+
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~---~~-----------------------------~g~~~~aLlevl 444 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSS---DM-----------------------------RGDPASALLEVL 444 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCCEEEEEChhhccc---cc-----------------------------CCCHHHHHHHHh
Confidence 23333333 456899999998631 00 011345677777
Q ss_pred ccc----cc-------CCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 346 DGL----WS-------ACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 346 dg~----~s-------~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
|-- +. ..-+++++|+|+|.. .|+|||+. ||+ .|.++.++.++..+|+++||.
T Consensus 445 d~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 445 DPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred ccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 731 00 011458999999998 49999999 997 799999999999999999984
No 90
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.7e-13 Score=147.78 Aligned_cols=157 Identities=17% Similarity=0.253 Sum_probs=112.9
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc-----------
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD----------- 261 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~----------- 261 (482)
...|.+|++|+|.+.+++.|...+. . | .....|||+||||||||++|+++|+.+++.
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~----~-------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQ----E-------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHH----c-------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 3478999999999988776654442 1 1 224689999999999999999999999753
Q ss_pred -------------eeecccccccChHHHHHHHHh---c---CCCeEEEEeCCcccccccccccccccccccCCCCCCccc
Q 011573 262 -------------LYDLELTAVKDNTELRKLLIE---T---SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQ 322 (482)
Q Consensus 262 -------------i~~l~l~~~~~~~~L~~l~~~---~---~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~ 322 (482)
++.++..+-..-+.++.+... . ....||||||+|.+-
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------------------ 132 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------------------ 132 (624)
T ss_pred HHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------------------
Confidence 333433221223344443322 2 246799999999861
Q ss_pred ccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 323 KLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 323 ~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
...++.||..|+.. ....++|++||.+..+.+.|++ |+. +|+|+.++.++...++...+..
T Consensus 133 ------------~~a~naLLk~LEEP----~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~ 193 (624)
T PRK14959 133 ------------REAFNALLKTLEEP----PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGR 193 (624)
T ss_pred ------------HHHHHHHHHHhhcc----CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHH
Confidence 22457788888864 2457899999999999999998 885 8899999999998888876654
Q ss_pred cC
Q 011573 403 ES 404 (482)
Q Consensus 403 ~~ 404 (482)
+.
T Consensus 194 eg 195 (624)
T PRK14959 194 EG 195 (624)
T ss_pred cC
Confidence 43
No 91
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.52 E-value=2.9e-14 Score=160.90 Aligned_cols=157 Identities=18% Similarity=0.286 Sum_probs=111.4
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----------CCceee
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----------GYDLYD 264 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----------~~~i~~ 264 (482)
.|..++.++|.++..+++++.+.. ..+.+++|+||||||||++++.+|..+ +..++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 467789999988876666554422 225689999999999999999999986 356777
Q ss_pred ccccccc--------ChHHHHHHHHhcC---CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccc
Q 011573 265 LELTAVK--------DNTELRKLLIETS---SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNN 333 (482)
Q Consensus 265 l~l~~~~--------~~~~L~~l~~~~~---~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (482)
++++.+. ....|+.++.... .++|||||||+.+.. .+.. . ....
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~---~g~~---------------------~-~~~d 303 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIG---AGGQ---------------------A-GQGD 303 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhcc---CCCc---------------------c-cccc
Confidence 7777652 1357888888653 579999999999753 2110 0 0000
Q ss_pred hHHHHHHHHhhhcccccCCCCceEEEEecCCcC-----cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 334 SQVTLSGLLNFIDGLWSACGGERLIVFTTNYIE-----KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 334 ~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~-----~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
.-+-|+..+. .++..+|+||+..+ .+||||.| ||. .|.++.|+.++...|++.+..
T Consensus 304 ---~~n~Lkp~l~------~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~ 364 (852)
T TIGR03345 304 ---AANLLKPALA------RGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAP 364 (852)
T ss_pred ---HHHHhhHHhh------CCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHH
Confidence 1112333332 25688899888754 38999999 996 899999999999999766544
No 92
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.52 E-value=1.1e-13 Score=148.98 Aligned_cols=162 Identities=23% Similarity=0.303 Sum_probs=110.1
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----------CCce
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----------GYDL 262 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----------~~~i 262 (482)
...|.+|++++|.+...+.+...+ . .+.+..+||+||||||||++|+++++++ +.++
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al----~---------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAAL----C---------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHH----h---------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 357899999999998887775432 1 1235689999999999999999998753 3578
Q ss_pred eeccccccc-ChHHHH-HHH--------------H------------hcCCCeEEEEeCCcccccccccccccccccccC
Q 011573 263 YDLELTAVK-DNTELR-KLL--------------I------------ETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDE 314 (482)
Q Consensus 263 ~~l~l~~~~-~~~~L~-~l~--------------~------------~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~ 314 (482)
+.++|+... ++..+. .++ . ......+|||||||.+-
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~---------------- 188 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELH---------------- 188 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCC----------------
Confidence 888886421 111111 111 0 11245799999999862
Q ss_pred CCCCCcccccccccccccchHHHHHHHHhhhccc--------cc-----------------CCCCceEEEEecCCcCcCC
Q 011573 315 GNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGL--------WS-----------------ACGGERLIVFTTNYIEKLD 369 (482)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~--------~s-----------------~~~~~~iiI~TTN~~~~LD 369 (482)
....+.||..|+.- .+ .+.+-++|++|||.++.|+
T Consensus 189 --------------------~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~ 248 (531)
T TIGR02902 189 --------------------PVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIP 248 (531)
T ss_pred --------------------HHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCC
Confidence 12233444444210 00 0112367778899999999
Q ss_pred HhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCC
Q 011573 370 PALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHN 406 (482)
Q Consensus 370 ~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~ 406 (482)
|+|++ |+. .|.|+.++.+++..|+++.+......
T Consensus 249 paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i~ 282 (531)
T TIGR02902 249 PALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGIN 282 (531)
T ss_pred hHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999 985 89999999999999999988654433
No 93
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.7e-13 Score=149.00 Aligned_cols=154 Identities=15% Similarity=0.289 Sum_probs=115.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc-------------
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD------------- 261 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~------------- 261 (482)
.|.+|++|+|.+.+++.|.+.+.. | ..+..||||||||||||++++++|+.+++.
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 689999999999988877655532 1 246789999999999999999999998642
Q ss_pred -----------eeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCccccc
Q 011573 262 -----------LYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKL 324 (482)
Q Consensus 262 -----------i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 324 (482)
++.++..+....+.++.+..... ..-|++|||+|.+-
T Consensus 79 c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-------------------------- 132 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-------------------------- 132 (576)
T ss_pred HHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------------------------
Confidence 33333332233445666665432 34699999999861
Q ss_pred ccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcccc
Q 011573 325 GKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIE 403 (482)
Q Consensus 325 ~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~ 403 (482)
....+.||..|+.. .+..++|++||.+++|.+.|+. |+. .++|..++.++....+...+..+
T Consensus 133 ----------~~a~naLLk~LEep----p~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~e 194 (576)
T PRK14965 133 ----------TNAFNALLKTLEEP----PPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQE 194 (576)
T ss_pred ----------HHHHHHHHHHHHcC----CCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHh
Confidence 23467799999864 3457889999999999999998 885 89999999988887777766544
No 94
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.9e-13 Score=144.00 Aligned_cols=180 Identities=18% Similarity=0.274 Sum_probs=121.8
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC-------------
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY------------- 260 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~------------- 260 (482)
..|.+|++++|.+.+.+.+.+.+.. ...+..||||||||||||++|+++|..+++
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 4688999999999988877655532 123568999999999999999999999863
Q ss_pred -----------ceeecccccccChHHHHHHHHhc---C---CCeEEEEeCCcccccccccccccccccccCCCCCCcccc
Q 011573 261 -----------DLYDLELTAVKDNTELRKLLIET---S---SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQK 323 (482)
Q Consensus 261 -----------~i~~l~l~~~~~~~~L~~l~~~~---~---~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 323 (482)
+++.++.++-.....++.+.... + .+.|++|||+|.+-
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------------------- 132 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------------------- 132 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-------------------------
Confidence 12223332222334455544332 2 45799999999752
Q ss_pred cccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcccc
Q 011573 324 LGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIE 403 (482)
Q Consensus 324 ~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~ 403 (482)
...++.||..|+.. +...++|++|+.++.|++++.+ |+. .+.|..++.++....+...+...
T Consensus 133 -----------~~a~naLLk~LEep----p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~e 194 (486)
T PRK14953 133 -----------KEAFNALLKTLEEP----PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEE 194 (486)
T ss_pred -----------HHHHHHHHHHHhcC----CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHc
Confidence 12346688888764 3446777788888999999998 885 79999999999998888877654
Q ss_pred CCCcH-HHHHHHhcCCCCCHHHHHHH
Q 011573 404 SHNLF-DKIGELLGEAKMTPADVAEH 428 (482)
Q Consensus 404 ~~~~~-~~i~~l~~~~~~s~adi~~~ 428 (482)
..... +.+..++..++-+..++...
T Consensus 195 gi~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 195 KIEYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 43322 23344444344444444433
No 95
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.51 E-value=8.8e-14 Score=157.37 Aligned_cols=156 Identities=20% Similarity=0.300 Sum_probs=114.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----------CCceee
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----------GYDLYD 264 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----------~~~i~~ 264 (482)
.|..++.++|.++..+++++.+.. ..+.+++|+||||||||++++++|..+ +++++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 456789999998876666655532 124689999999999999999999988 788988
Q ss_pred ccccccc--------ChHHHHHHHHhc---CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccc
Q 011573 265 LELTAVK--------DNTELRKLLIET---SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNN 333 (482)
Q Consensus 265 l~l~~~~--------~~~~L~~l~~~~---~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (482)
++++.+. .+..++.+|... ..++||||||||.+.. .++. .
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~---~~~~-----------------------~--- 290 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVG---AGKA-----------------------D--- 290 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhcc---CCCC-----------------------c---
Confidence 8887752 134688888753 4689999999999852 2110 0
Q ss_pred hHHHHHHHH-hhhcccccCCCCceEEEEecCCcC-----cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 334 SQVTLSGLL-NFIDGLWSACGGERLIVFTTNYIE-----KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 334 ~~~~ls~LL-~~ldg~~s~~~~~~iiI~TTN~~~-----~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
.....+.+| ..+ ..++..+|+||+..+ .+|+||.| ||+ .|.++.|+.+++..|++.+..
T Consensus 291 ~~~d~~~~lkp~l------~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 291 GAMDAGNMLKPAL------ARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred cchhHHHHhcchh------hcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhh
Confidence 001112222 222 135688999998887 38999999 998 689999999999999987654
No 96
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.50 E-value=4.1e-13 Score=139.81 Aligned_cols=177 Identities=21% Similarity=0.215 Sum_probs=114.2
Q ss_pred cc-ccccChHHHHHHHHHHHHHhhCHHHHHH--hCC-CcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccC--
Q 011573 199 FQ-TLAMEPAEKKEIIDDLIAFSKSEDFYAR--IGR-AWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKD-- 272 (482)
Q Consensus 199 ~~-~l~~~~~~k~~i~~~l~~fl~~~~~y~~--~g~-~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~-- 272 (482)
++ .|+|.+++|+.+...+....+.-..... -++ .++.++||+||||||||++|+++|..++.+++.++++.+..
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~g 148 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAG 148 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCC
Confidence 54 4899999999886666543332111000 011 24578999999999999999999999999999999887632
Q ss_pred ------hHHHHHHHHhc------CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHH
Q 011573 273 ------NTELRKLLIET------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSG 340 (482)
Q Consensus 273 ------~~~L~~l~~~~------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 340 (482)
...+..++... ..++||||||||.+....+.. +...+.....+.+.
T Consensus 149 yvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~----------------------~~~~d~s~~~vQ~~ 206 (412)
T PRK05342 149 YVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENP----------------------SITRDVSGEGVQQA 206 (412)
T ss_pred cccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCC----------------------CcCCCcccHHHHHH
Confidence 22344444322 368999999999974210000 00011112347788
Q ss_pred HHhhhccccc----C-----CCCceEEEEecCCcC---------------------------------------------
Q 011573 341 LLNFIDGLWS----A-----CGGERLIVFTTNYIE--------------------------------------------- 366 (482)
Q Consensus 341 LL~~ldg~~s----~-----~~~~~iiI~TTN~~~--------------------------------------------- 366 (482)
||..|||-.. . ...+.++|+|+|-..
T Consensus 207 LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~ 286 (412)
T PRK05342 207 LLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVE 286 (412)
T ss_pred HHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcC
Confidence 9999987421 0 112346777777510
Q ss_pred -------cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHh
Q 011573 367 -------KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNY 399 (482)
Q Consensus 367 -------~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~ 399 (482)
-+.|+|+- |+|..+.|...+.+++..|+...
T Consensus 287 ~~dL~~~gf~PEflg--Rld~iv~f~~L~~~~L~~Il~~~ 324 (412)
T PRK05342 287 PEDLIKFGLIPEFIG--RLPVVATLEELDEEALVRILTEP 324 (412)
T ss_pred HHHHHHHhhhHHHhC--CCCeeeecCCCCHHHHHHHHHHH
Confidence 02345554 99999999999999999998754
No 97
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=6.4e-13 Score=140.43 Aligned_cols=154 Identities=18% Similarity=0.238 Sum_probs=110.8
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc------------
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD------------ 261 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~------------ 261 (482)
..|.+|++|+|.+.+++.+.+.+.. | ..+..||||||||+|||++|+++|+.+...
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~-----------~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRF-----------N-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 3689999999999888766554431 1 245789999999999999999999988542
Q ss_pred -------------eeecccccccChHHHHHHHHhc------CCCeEEEEeCCcccccccccccccccccccCCCCCCccc
Q 011573 262 -------------LYDLELTAVKDNTELRKLLIET------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQ 322 (482)
Q Consensus 262 -------------i~~l~l~~~~~~~~L~~l~~~~------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~ 322 (482)
++.++-.....-+.++.+.... ..+.|++|||+|.+-
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------------------ 134 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------------------ 134 (451)
T ss_pred HHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------------------
Confidence 2223221112234454443322 357899999999862
Q ss_pred ccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 323 KLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 323 ~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
....+.||..|+.. ++..++|++||.+.+|.++|.. |+. .++|..++.++....+...+..
T Consensus 135 ------------~~~~n~LLk~lEep----~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~ 195 (451)
T PRK06305 135 ------------KEAFNSLLKTLEEP----PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQ 195 (451)
T ss_pred ------------HHHHHHHHHHhhcC----CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHH
Confidence 12356788888874 2457788888999999999999 885 7999999999888877776543
No 98
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=4.7e-13 Score=144.52 Aligned_cols=180 Identities=16% Similarity=0.232 Sum_probs=123.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc------------
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD------------ 261 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~------------ 261 (482)
..|.+|++|+|.+.+++.+...+.. | ..+..||||||||+|||++|+++|+.+++.
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 3689999999999998887655532 1 235689999999999999999999998642
Q ss_pred ------------eeecccccccChHHHHHHHHhc------CCCeEEEEeCCcccccccccccccccccccCCCCCCcccc
Q 011573 262 ------------LYDLELTAVKDNTELRKLLIET------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQK 323 (482)
Q Consensus 262 ------------i~~l~l~~~~~~~~L~~l~~~~------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 323 (482)
++.++-.+-..-..++.+...+ ...-|++|||+|.+-
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------------------- 132 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------------------- 132 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-------------------------
Confidence 2222222212234566655332 245799999999851
Q ss_pred cccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcccc
Q 011573 324 LGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIE 403 (482)
Q Consensus 324 ~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~ 403 (482)
...++.||..++.. +...++|++|+.+..|.++|+. |+. .++|..++.++....++..+...
T Consensus 133 -----------~~a~naLLK~LEep----p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~e 194 (563)
T PRK06647 133 -----------NSAFNALLKTIEEP----PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLED 194 (563)
T ss_pred -----------HHHHHHHHHhhccC----CCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHc
Confidence 23567788888863 3557888888889999999998 886 78999999999888888776443
Q ss_pred CCCcH-HHHHHHhcCCCCCHHHHHHH
Q 011573 404 SHNLF-DKIGELLGEAKMTPADVAEH 428 (482)
Q Consensus 404 ~~~~~-~~i~~l~~~~~~s~adi~~~ 428 (482)
..... +.+..++...+=++.++...
T Consensus 195 gi~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 195 QIKYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 33222 22333333334445444433
No 99
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=4e-13 Score=140.19 Aligned_cols=178 Identities=15% Similarity=0.272 Sum_probs=119.5
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc------------
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD------------ 261 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~------------ 261 (482)
-.|.+|++|+|.+.+++.|...+.. | ..+..||||||||||||++|+++|+.+.+.
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 3689999999999988876554431 1 235679999999999999999999999652
Q ss_pred --------------------eeecccccccChHHHHHHHHhc---C---CCeEEEEeCCcccccccccccccccccccCC
Q 011573 262 --------------------LYDLELTAVKDNTELRKLLIET---S---SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEG 315 (482)
Q Consensus 262 --------------------i~~l~l~~~~~~~~L~~l~~~~---~---~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~ 315 (482)
++.++......-+.++.+.... + ..-|+||||+|.+-
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~----------------- 140 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS----------------- 140 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----------------
Confidence 1222221222235666665554 2 45799999999852
Q ss_pred CCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHH
Q 011573 316 NDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVL 395 (482)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l 395 (482)
....+.||..++.. .+..++|++|+.+..|-++|.. |+. .++|..++.++....
T Consensus 141 -------------------~~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~ 194 (397)
T PRK14955 141 -------------------IAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQ 194 (397)
T ss_pred -------------------HHHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHH
Confidence 12345688887753 3446777787888899999998 885 899999999988888
Q ss_pred HHHhccccCCCc-HHHHHHHhcCCCCCHHHHH
Q 011573 396 AKNYLNIESHNL-FDKIGELLGEAKMTPADVA 426 (482)
Q Consensus 396 ~~~~l~~~~~~~-~~~i~~l~~~~~~s~adi~ 426 (482)
+...+....... .+.+..++..++-++..+.
T Consensus 195 l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 195 LQGICEAEGISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 877665433222 2233333333344444443
No 100
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=5.7e-13 Score=144.59 Aligned_cols=158 Identities=16% Similarity=0.298 Sum_probs=117.0
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCce----------
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDL---------- 262 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i---------- 262 (482)
...|.+|++|+|.+.+++.|.+.+.. | ..+.+||||||||+|||++|+++|+.+++..
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 34789999999999988887654431 2 2356899999999999999999999986532
Q ss_pred -------------------eecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCC
Q 011573 263 -------------------YDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGND 317 (482)
Q Consensus 263 -------------------~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~ 317 (482)
+.++..+...-..++.++..+. ..-|+||||+|.+-
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------------- 145 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------------- 145 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-------------------
Confidence 1222222233456777765542 46799999999851
Q ss_pred CCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHH
Q 011573 318 KDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAK 397 (482)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~ 397 (482)
....+.||..|+.. .+..++|++|+.++++.+.++. |+. .++|..++.++....+.
T Consensus 146 -----------------~~a~naLLKtLEeP----p~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~ 201 (598)
T PRK09111 146 -----------------TAAFNALLKTLEEP----PPHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLS 201 (598)
T ss_pred -----------------HHHHHHHHHHHHhC----CCCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHH
Confidence 23467788888864 3457888888999999999988 884 89999999999988888
Q ss_pred HhccccCC
Q 011573 398 NYLNIESH 405 (482)
Q Consensus 398 ~~l~~~~~ 405 (482)
..+..+..
T Consensus 202 ~i~~kegi 209 (598)
T PRK09111 202 RIAAKEGV 209 (598)
T ss_pred HHHHHcCC
Confidence 87765443
No 101
>PRK06893 DNA replication initiation factor; Validated
Probab=99.48 E-value=5.7e-13 Score=128.79 Aligned_cols=161 Identities=12% Similarity=0.221 Sum_probs=100.2
Q ss_pred eccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccc
Q 011573 192 VFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELT 268 (482)
Q Consensus 192 ~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~ 268 (482)
....+.+|++.++.+... ....+... + ...+.+.++||||||||||+|++|+|+++ +.....+++.
T Consensus 8 ~~~~~~~fd~f~~~~~~~--~~~~~~~~------~---~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 8 HQIDDETLDNFYADNNLL--LLDSLRKN------F---IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCCCcccccccccCChHH--HHHHHHHH------h---hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 445678999998765321 22222111 1 11123457999999999999999999986 3454445443
Q ss_pred cccChHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhccc
Q 011573 269 AVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGL 348 (482)
Q Consensus 269 ~~~~~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 348 (482)
... ....+++....+..+|+||||+.+. +.+ .... .|++.++..
T Consensus 77 ~~~--~~~~~~~~~~~~~dlLilDDi~~~~---~~~----------------------------~~~~---~l~~l~n~~ 120 (229)
T PRK06893 77 KSQ--YFSPAVLENLEQQDLVCLDDLQAVI---GNE----------------------------EWEL---AIFDLFNRI 120 (229)
T ss_pred Hhh--hhhHHHHhhcccCCEEEEeChhhhc---CCh----------------------------HHHH---HHHHHHHHH
Confidence 221 1223445555677899999999852 111 1112 344445444
Q ss_pred ccCCCCceEEEEecC-CcCcCC---HhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 349 WSACGGERLIVFTTN-YIEKLD---PALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 349 ~s~~~~~~iiI~TTN-~~~~LD---~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
... +..++|+|+| .|..++ |.|.+..+....+.++.|+.+.+..+++....
T Consensus 121 ~~~--~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~ 175 (229)
T PRK06893 121 KEQ--GKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY 175 (229)
T ss_pred HHc--CCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH
Confidence 321 2345555554 566554 89998555567899999999999999987754
No 102
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1e-12 Score=140.05 Aligned_cols=181 Identities=18% Similarity=0.255 Sum_probs=127.3
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC-------------
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY------------- 260 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~------------- 260 (482)
..|.+|++|+|.+.+++.+...+.. | ..+..||||||||+|||++|+++|+.+..
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 4689999999999998877655431 1 34678999999999999999999998732
Q ss_pred -----------ceeecccccccChHHHHHHHHhc------CCCeEEEEeCCcccccccccccccccccccCCCCCCcccc
Q 011573 261 -----------DLYDLELTAVKDNTELRKLLIET------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQK 323 (482)
Q Consensus 261 -----------~i~~l~l~~~~~~~~L~~l~~~~------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 323 (482)
+++.++..+-..-..++.+.... ...-|++|||+|.+
T Consensus 76 ~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-------------------------- 129 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-------------------------- 129 (535)
T ss_pred HHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC--------------------------
Confidence 24444433222345677776553 23469999999986
Q ss_pred cccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcccc
Q 011573 324 LGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIE 403 (482)
Q Consensus 324 ~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~ 403 (482)
....++.||..|+.. +....+|++|+.+..|.++++. |+. +++|..++.++....+...+..+
T Consensus 130 ----------t~~A~NALLK~LEEp----p~~t~FIL~ttd~~kL~~tI~S--Rc~-~~~F~~Ls~~ei~~~L~~Il~~E 192 (535)
T PRK08451 130 ----------TKEAFNALLKTLEEP----PSYVKFILATTDPLKLPATILS--RTQ-HFRFKQIPQNSIISHLKTILEKE 192 (535)
T ss_pred ----------CHHHHHHHHHHHhhc----CCceEEEEEECChhhCchHHHh--hce-eEEcCCCCHHHHHHHHHHHHHHc
Confidence 223567789888875 2346778888888999999999 874 99999999999888888777654
Q ss_pred CCCc-HHHHHHHhcCCCCCHHHHHHHh
Q 011573 404 SHNL-FDKIGELLGEAKMTPADVAEHL 429 (482)
Q Consensus 404 ~~~~-~~~i~~l~~~~~~s~adi~~~l 429 (482)
.... .+.+..++...+-++.++...|
T Consensus 193 Gi~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 193 GVSYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 4332 2333444444444555555443
No 103
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.2e-12 Score=142.26 Aligned_cols=154 Identities=14% Similarity=0.298 Sum_probs=111.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc-------------
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD------------- 261 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~------------- 261 (482)
.|.+|++++|.+.+++.|.+.+. . | ..+.+|||+||||||||++|+++|+.+++.
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~----~-------~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLR----M-------D-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 68899999999988887654332 1 1 345689999999999999999999999762
Q ss_pred -------------------eeecccccccChHHHHHHHHhc------CCCeEEEEeCCcccccccccccccccccccCCC
Q 011573 262 -------------------LYDLELTAVKDNTELRKLLIET------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGN 316 (482)
Q Consensus 262 -------------------i~~l~l~~~~~~~~L~~l~~~~------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~ 316 (482)
+..++..+....+.++.+.... ...-|++|||+|.+-
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------------ 140 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------------ 140 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC------------------
Confidence 1112211222345677766554 246799999999862
Q ss_pred CCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHH
Q 011573 317 DKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLA 396 (482)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~ 396 (482)
....+.||..|+.. ++..++|++|+.+.+|.++|.. |+. .|+|..++.++....+
T Consensus 141 ------------------~~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~S--Rc~-~vef~~l~~~ei~~~L 195 (620)
T PRK14954 141 ------------------TAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLDEIQSQL 195 (620)
T ss_pred ------------------HHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--hce-EEecCCCCHHHHHHHH
Confidence 12356788888874 3446778888888999999998 884 9999999999888777
Q ss_pred HHhcccc
Q 011573 397 KNYLNIE 403 (482)
Q Consensus 397 ~~~l~~~ 403 (482)
...+..+
T Consensus 196 ~~i~~~e 202 (620)
T PRK14954 196 QMICRAE 202 (620)
T ss_pred HHHHHHc
Confidence 7765543
No 104
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.47 E-value=1.1e-12 Score=133.49 Aligned_cols=157 Identities=15% Similarity=0.211 Sum_probs=104.5
Q ss_pred eccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhC-----Cceeecc
Q 011573 192 VFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLG-----YDLYDLE 266 (482)
Q Consensus 192 ~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~-----~~i~~l~ 266 (482)
....|.+|+++++.+++++.+...+ .. +. ..++|||||||||||++++++|+++. .++..++
T Consensus 7 ~ky~P~~~~~~~g~~~~~~~L~~~~----~~-------~~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~ 73 (337)
T PRK12402 7 EKYRPALLEDILGQDEVVERLSRAV----DS-------PN--LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN 73 (337)
T ss_pred HhhCCCcHHHhcCCHHHHHHHHHHH----hC-------CC--CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec
Confidence 3457999999999988777765433 22 11 12699999999999999999999984 2345566
Q ss_pred cccccC--------------------------hHHHHHHHHhc-------CCCeEEEEeCCccccccccccccccccccc
Q 011573 267 LTAVKD--------------------------NTELRKLLIET-------SSKSIIVIEDIDCSLDLTGQRRKKKEKKED 313 (482)
Q Consensus 267 l~~~~~--------------------------~~~L~~l~~~~-------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~ 313 (482)
+..... ...++.++... ..+.+|+|||+|.+-+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-------------- 139 (337)
T PRK12402 74 VADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-------------- 139 (337)
T ss_pred hhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--------------
Confidence 544210 11222222211 2356999999997520
Q ss_pred CCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHH
Q 011573 314 EGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFK 393 (482)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~ 393 (482)
.....|+..++... ....+|+||+++..+.++|.. |+ ..++|.+|+.++..
T Consensus 140 ----------------------~~~~~L~~~le~~~----~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~ 190 (337)
T PRK12402 140 ----------------------DAQQALRRIMEQYS----RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELV 190 (337)
T ss_pred ----------------------HHHHHHHHHHHhcc----CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHH
Confidence 11234555565432 224566677777888888887 77 47999999999999
Q ss_pred HHHHHhccccC
Q 011573 394 VLAKNYLNIES 404 (482)
Q Consensus 394 ~l~~~~l~~~~ 404 (482)
.+++..+....
T Consensus 191 ~~l~~~~~~~~ 201 (337)
T PRK12402 191 DVLESIAEAEG 201 (337)
T ss_pred HHHHHHHHHcC
Confidence 99888765443
No 105
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.47 E-value=2.2e-13 Score=154.59 Aligned_cols=157 Identities=19% Similarity=0.245 Sum_probs=111.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----------CCceee
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----------GYDLYD 264 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----------~~~i~~ 264 (482)
.|..++.++|.++..+++++.+.. ..+..++|+||||||||++++++|..+ +++++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 456788999988876666554432 235688999999999999999999986 678888
Q ss_pred ccccccc--------ChHHHHHHHHhc---CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccc
Q 011573 265 LELTAVK--------DNTELRKLLIET---SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNN 333 (482)
Q Consensus 265 l~l~~~~--------~~~~L~~l~~~~---~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (482)
++++.+. .+..++.+|... ..++||||||||.++. .+. ..+
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~---~g~------------------------~~~- 286 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVG---AGK------------------------AEG- 286 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhc---CCC------------------------Ccc-
Confidence 8877652 123677887765 3589999999999752 111 000
Q ss_pred hHHHHHHHHhhhcccccCCCCceEEEEecCCcC-----cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 334 SQVTLSGLLNFIDGLWSACGGERLIVFTTNYIE-----KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 334 ~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~-----~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
.....+-|...+. .+...+|++|+..+ .+|+||.| ||. .|.++.|+.+++..|++.+..
T Consensus 287 ~~d~~~~Lk~~l~------~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 287 AMDAGNMLKPALA------RGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred hhHHHHHhchhhh------cCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHH
Confidence 0111122222221 24578888888764 47999999 997 689999999999999987644
No 106
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=9.1e-13 Score=143.83 Aligned_cols=155 Identities=19% Similarity=0.291 Sum_probs=113.6
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc-----------
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD----------- 261 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~----------- 261 (482)
...|.+|++++|.+.+++.|...+.. | ....+||||||||||||++|+++|+.+++.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 34689999999999888877554432 1 123589999999999999999999998652
Q ss_pred ---------------eeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCc
Q 011573 262 ---------------LYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDP 320 (482)
Q Consensus 262 ---------------i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~ 320 (482)
++.++.........+++++..+. ..-|+||||+|.+-
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt---------------------- 134 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS---------------------- 134 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC----------------------
Confidence 23333222234456777776542 34699999999861
Q ss_pred ccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhc
Q 011573 321 RQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYL 400 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l 400 (482)
....+.||..|+.. ....++|++|++++.|-++|+. |+. .++|..++.++....+....
T Consensus 135 --------------~~a~naLLK~LEeP----p~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia 193 (620)
T PRK14948 135 --------------TAAFNALLKTLEEP----PPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIA 193 (620)
T ss_pred --------------HHHHHHHHHHHhcC----CcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHH
Confidence 23467789999864 3457888888899999999998 885 78999998887776666555
Q ss_pred cc
Q 011573 401 NI 402 (482)
Q Consensus 401 ~~ 402 (482)
..
T Consensus 194 ~k 195 (620)
T PRK14948 194 EK 195 (620)
T ss_pred HH
Confidence 43
No 107
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.47 E-value=5.4e-13 Score=128.10 Aligned_cols=157 Identities=18% Similarity=0.247 Sum_probs=100.7
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeeccccc
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTA 269 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~ 269 (482)
...+.+|++.+.. ..+.+++.+..++.. ..++.++|+||||||||++++++++++ +.+++.+++..
T Consensus 8 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~---------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 8 LPDDPTFDNFYAG--GNAELLAALRQLAAG---------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCCchhhcCcCcC--CcHHHHHHHHHHHhc---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 3455778888832 334444555554321 235789999999999999999999987 46777788777
Q ss_pred ccChHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccc
Q 011573 270 VKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLW 349 (482)
Q Consensus 270 ~~~~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~ 349 (482)
+.. ....++.......+|+|||+|.+-. . . .....|...++...
T Consensus 77 ~~~--~~~~~~~~~~~~~lLvIDdi~~l~~---~------------------------------~-~~~~~L~~~l~~~~ 120 (226)
T TIGR03420 77 LAQ--ADPEVLEGLEQADLVCLDDVEAIAG---Q------------------------------P-EWQEALFHLYNRVR 120 (226)
T ss_pred HHH--hHHHHHhhcccCCEEEEeChhhhcC---C------------------------------h-HHHHHHHHHHHHHH
Confidence 642 2234444445567999999998521 0 0 01223444444432
Q ss_pred cCCCCceEEEEecC-CcCcCC---HhhhcCCCe--eeEEEccCCCHHHHHHHHHHhcc
Q 011573 350 SACGGERLIVFTTN-YIEKLD---PALIRKGRM--DKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 350 s~~~~~~iiI~TTN-~~~~LD---~aL~RpGR~--d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
.. +. .+|+|++ .+..++ +.|.+ |+ ..+|.++.|+.+++..+++.+..
T Consensus 121 ~~--~~-~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 121 EA--GG-RLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred Hc--CC-eEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 21 12 3455555 444432 78887 66 47899999999999999887653
No 108
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.46 E-value=2.7e-13 Score=150.62 Aligned_cols=154 Identities=24% Similarity=0.353 Sum_probs=106.8
Q ss_pred ccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----------CCceeecccc
Q 011573 199 FQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----------GYDLYDLELT 268 (482)
Q Consensus 199 ~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----------~~~i~~l~l~ 268 (482)
++.++|.++..+++++.+.. ..+.++||+||||||||++++++|..+ +..++.++++
T Consensus 185 ~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~ 251 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH
Confidence 56778877777777654443 124678999999999999999999874 5667776665
Q ss_pred ccc--------ChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHH
Q 011573 269 AVK--------DNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTL 338 (482)
Q Consensus 269 ~~~--------~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 338 (482)
.+. .+..++.++... ..++||||||||.++. .+. .......+
T Consensus 252 ~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g---~g~-------------------------~~~g~~d~ 303 (758)
T PRK11034 252 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIG---AGA-------------------------ASGGQVDA 303 (758)
T ss_pred HHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhc---cCC-------------------------CCCcHHHH
Confidence 542 234567776654 4678999999999863 211 00011112
Q ss_pred HHHHhhhcccccCCCCceEEEEecCCcC-----cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 339 SGLLNFIDGLWSACGGERLIVFTTNYIE-----KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 339 s~LL~~ldg~~s~~~~~~iiI~TTN~~~-----~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
..+| ..+.. .+++.+|++||..+ .+||||.| ||+ .|.++.|+.+++..|++.+..
T Consensus 304 ~nlL---kp~L~--~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 304 ANLI---KPLLS--SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred HHHH---HHHHh--CCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHH
Confidence 2222 22211 25588999998876 47999999 997 899999999999999997643
No 109
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.5e-12 Score=142.24 Aligned_cols=178 Identities=16% Similarity=0.288 Sum_probs=126.5
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhC--------------
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLG-------------- 259 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~-------------- 259 (482)
..|.+|++|+|.+.+++.|...+.. | ..+..||||||+|+|||++++++|..+.
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~~-----------~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIAT-----------N-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 4689999999999998887665541 1 2457899999999999999999999885
Q ss_pred -----------CceeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCccc
Q 011573 260 -----------YDLYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQ 322 (482)
Q Consensus 260 -----------~~i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~ 322 (482)
.+++.++..+......++.++..+. ..-|++|||+|.+-
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------------------ 134 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------------------ 134 (614)
T ss_pred hHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------------------
Confidence 2444444443334566777775543 35699999999862
Q ss_pred ccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 323 KLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 323 ~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
....+.||..|+.. ++..++|++|+.+.+|-++|+. |+. .++|..++.++....+...+..
T Consensus 135 ------------~~a~naLLK~LEep----p~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~ 195 (614)
T PRK14971 135 ------------QAAFNAFLKTLEEP----PSYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASK 195 (614)
T ss_pred ------------HHHHHHHHHHHhCC----CCCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHH
Confidence 22456789988875 3446788888888999999999 885 7999999999988888876654
Q ss_pred cCCCcH-HHHHHHhcCCCCCHHHHH
Q 011573 403 ESHNLF-DKIGELLGEAKMTPADVA 426 (482)
Q Consensus 403 ~~~~~~-~~i~~l~~~~~~s~adi~ 426 (482)
+..... +.+..++..+|-+..++.
T Consensus 196 egi~i~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 196 EGITAEPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 433222 223444444444444443
No 110
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.45 E-value=1.2e-12 Score=145.54 Aligned_cols=159 Identities=16% Similarity=0.323 Sum_probs=112.7
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHHHHH
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLL 280 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~~l~ 280 (482)
.|+|.++.++.|.+.+.....+- ...+ .|...+||+||||||||.+|+++|..++.+++.++++.......+..++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl---~~~~-kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL---GHEH-KPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc---cCCC-CCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 36788888888877775432210 0001 2234689999999999999999999999999999988764322233322
Q ss_pred H---------------h---cCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHH
Q 011573 281 I---------------E---TSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLL 342 (482)
Q Consensus 281 ~---------------~---~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 342 (482)
. + ....|||+|||||.+- ....+.||
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~------------------------------------~~v~~~LL 578 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH------------------------------------PDVFNLLL 578 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh------------------------------------HHHHHHHH
Confidence 1 1 1245999999999851 23567788
Q ss_pred hhhc-ccccC-CC-----CceEEEEecCCc-------------------------CcCCHhhhcCCCeeeEEEccCCCHH
Q 011573 343 NFID-GLWSA-CG-----GERLIVFTTNYI-------------------------EKLDPALIRKGRMDKHIELSHCSYE 390 (482)
Q Consensus 343 ~~ld-g~~s~-~~-----~~~iiI~TTN~~-------------------------~~LD~aL~RpGR~d~~I~~~~p~~~ 390 (482)
..|| |.... .| .+.|+|+|||.- ..+.|+|+. |+|..|.|++.+.+
T Consensus 579 q~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~ 656 (758)
T PRK11034 579 QVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTD 656 (758)
T ss_pred HHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHH
Confidence 8887 32211 11 356899999921 236688888 99999999999999
Q ss_pred HHHHHHHHhcc
Q 011573 391 AFKVLAKNYLN 401 (482)
Q Consensus 391 ~~~~l~~~~l~ 401 (482)
+..+|+..++.
T Consensus 657 ~l~~I~~~~l~ 667 (758)
T PRK11034 657 VIHQVVDKFIV 667 (758)
T ss_pred HHHHHHHHHHH
Confidence 99999988875
No 111
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.44 E-value=6.9e-13 Score=146.68 Aligned_cols=152 Identities=23% Similarity=0.291 Sum_probs=105.0
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccCh
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDN 273 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~ 273 (482)
..|.+|++++|.+.+.... ..+...+.. + ....+|||||||||||++++++|+.++.+++.+++... ..
T Consensus 22 ~RP~tldd~vGQe~ii~~~-~~L~~~i~~-------~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-~i 90 (725)
T PRK13341 22 LRPRTLEEFVGQDHILGEG-RLLRRAIKA-------D--RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-GV 90 (725)
T ss_pred cCCCcHHHhcCcHHHhhhh-HHHHHHHhc-------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-hh
Confidence 3589999999988776431 222222222 1 12478999999999999999999999998888776532 22
Q ss_pred HHHHHHHHh-------cCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 274 TELRKLLIE-------TSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 274 ~~L~~l~~~-------~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
..++..+.. ...+.||||||||.+- ......|+..++
T Consensus 91 ~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln------------------------------------~~qQdaLL~~lE 134 (725)
T PRK13341 91 KDLRAEVDRAKERLERHGKRTILFIDEVHRFN------------------------------------KAQQDALLPWVE 134 (725)
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeChhhCC------------------------------------HHHHHHHHHHhc
Confidence 233333332 2356799999999862 112334666655
Q ss_pred ccccCCCCceEEEEec--CCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 347 GLWSACGGERLIVFTT--NYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 347 g~~s~~~~~~iiI~TT--N~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
. +.+++|++| |....++++|++ |+. .+.|+.++.+++..+++.++.
T Consensus 135 ~------g~IiLI~aTTenp~~~l~~aL~S--R~~-v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 135 N------GTITLIGATTENPYFEVNKALVS--RSR-LFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred C------ceEEEEEecCCChHhhhhhHhhc--ccc-ceecCCCCHHHHHHHHHHHHH
Confidence 3 235666644 444678999998 764 699999999999999998875
No 112
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.2e-12 Score=140.76 Aligned_cols=156 Identities=13% Similarity=0.295 Sum_probs=112.1
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc------------
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD------------ 261 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~------------ 261 (482)
..|.+|++|+|.+.+++.|...+.. | ..+..||||||||||||++++++|+.+++.
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~-----------~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAE-----------G-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 4689999999999998877554432 1 134569999999999999999999988532
Q ss_pred -------------eeecccccccChHHHHHHHHhc------CCCeEEEEeCCcccccccccccccccccccCCCCCCccc
Q 011573 262 -------------LYDLELTAVKDNTELRKLLIET------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQ 322 (482)
Q Consensus 262 -------------i~~l~l~~~~~~~~L~~l~~~~------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~ 322 (482)
++.++.+.....+.++.+.... ...-||||||+|.+-
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------------------ 133 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------------------ 133 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------------------
Confidence 2223332223344556554432 246799999999851
Q ss_pred ccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 323 KLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 323 ~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
...++.||..|+.. ....+||++|+..+.+.+.|.. |+. .++|..++..+...++...+..
T Consensus 134 ------------~~a~naLLk~LEep----p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~ 194 (585)
T PRK14950 134 ------------TAAFNALLKTLEEP----PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAA 194 (585)
T ss_pred ------------HHHHHHHHHHHhcC----CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHH
Confidence 12466788888874 2447888888888899999988 885 7899999999888887777654
Q ss_pred cC
Q 011573 403 ES 404 (482)
Q Consensus 403 ~~ 404 (482)
..
T Consensus 195 eg 196 (585)
T PRK14950 195 EG 196 (585)
T ss_pred cC
Confidence 33
No 113
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.44 E-value=1.3e-12 Score=135.44 Aligned_cols=178 Identities=24% Similarity=0.285 Sum_probs=112.8
Q ss_pred ccc-cccChHHHHHHHHHHHHHhhCHHHHHH----hCCC-cCccccccCCCCchHHHHHHHHHHHhCCceeecccccccC
Q 011573 199 FQT-LAMEPAEKKEIIDDLIAFSKSEDFYAR----IGRA-WKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKD 272 (482)
Q Consensus 199 ~~~-l~~~~~~k~~i~~~l~~fl~~~~~y~~----~g~~-~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~ 272 (482)
|+. |+|.++.++.+...+....++-..... .+++ .+.++||+||||||||++|+++|..++.++..++++.+..
T Consensus 75 L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~ 154 (413)
T TIGR00382 75 LDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTE 154 (413)
T ss_pred hcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccc
Confidence 444 588888888886665433322110000 0111 1457999999999999999999999999999888776521
Q ss_pred --------hHHHHHHHHhc------CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHH
Q 011573 273 --------NTELRKLLIET------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTL 338 (482)
Q Consensus 273 --------~~~L~~l~~~~------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 338 (482)
...+..++... ..++||||||||.+.. ++.. . +...+-....+.
T Consensus 155 ~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~---~~~~---~----------------s~~~dvsg~~vq 212 (413)
T TIGR00382 155 AGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR---KSEN---P----------------SITRDVSGEGVQ 212 (413)
T ss_pred cccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch---hhcc---c----------------cccccccchhHH
Confidence 22344444432 3678999999998642 1100 0 000011122467
Q ss_pred HHHHhhhcccccC---CC------CceEEEEecCCc---------------------------C----------------
Q 011573 339 SGLLNFIDGLWSA---CG------GERLIVFTTNYI---------------------------E---------------- 366 (482)
Q Consensus 339 s~LL~~ldg~~s~---~~------~~~iiI~TTN~~---------------------------~---------------- 366 (482)
+.||..|||.... .+ .+.|+|+|+|-. +
T Consensus 213 ~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~ 292 (413)
T TIGR00382 213 QALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVE 292 (413)
T ss_pred HHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHH
Confidence 7789999876421 11 345889998861 0
Q ss_pred -------cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhc
Q 011573 367 -------KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYL 400 (482)
Q Consensus 367 -------~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l 400 (482)
.+.|+|+- |+|..+.|...+.+++..|+..-+
T Consensus 293 ~~dl~~~g~~PEflg--Rld~Iv~f~pL~~~~L~~Il~~~~ 331 (413)
T TIGR00382 293 PEDLVKFGLIPEFIG--RLPVIATLEKLDEEALIAILTKPK 331 (413)
T ss_pred HHHHHHHhhHHHHhC--CCCeEeecCCCCHHHHHHHHHHHH
Confidence 02355555 999999999999999999887643
No 114
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.43 E-value=1.1e-12 Score=131.40 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=92.4
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHHH------------------HH-HhcCCCeEEEEeCC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRK------------------LL-IETSSKSIIVIEDI 294 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~~------------------l~-~~~~~~sIl~iDdi 294 (482)
++.+||.||||||||++++++|..++.+++.++++...+...+.. .| .....+++|++|||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechh
Confidence 578999999999999999999999999999998876532211100 11 11246789999999
Q ss_pred cccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcc--ccc--------CCCCceEEEEecCC
Q 011573 295 DCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDG--LWS--------ACGGERLIVFTTNY 364 (482)
Q Consensus 295 D~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg--~~s--------~~~~~~iiI~TTN~ 364 (482)
|.+- ..+++.|...||. ... .+.....+|+|+|.
T Consensus 144 n~a~------------------------------------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np 187 (327)
T TIGR01650 144 DAGR------------------------------------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANT 187 (327)
T ss_pred hccC------------------------------------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCC
Confidence 9841 1234444444441 110 12234678999998
Q ss_pred cC------------cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhc
Q 011573 365 IE------------KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYL 400 (482)
Q Consensus 365 ~~------------~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l 400 (482)
.+ .|++|++. ||-+.+.++||+.+.-.+|+....
T Consensus 188 ~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 188 IGLGDTTGLYHGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CCcCCCCcceeeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 65 36899999 998889999999999999987664
No 115
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.42 E-value=1.7e-12 Score=125.07 Aligned_cols=153 Identities=17% Similarity=0.207 Sum_probs=96.7
Q ss_pred eccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccc
Q 011573 192 VFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELT 268 (482)
Q Consensus 192 ~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~ 268 (482)
+...|.+|++++.... +.++..+..+.. +....++++|+||||||||+|++++++++ +.+++.+++.
T Consensus 10 ~~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 10 GPPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CCCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 4456688999773321 223333433322 23345789999999999999999999986 6677777766
Q ss_pred cccChHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhccc
Q 011573 269 AVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGL 348 (482)
Q Consensus 269 ~~~~~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 348 (482)
.... .+.......+|+|||+|.+- . .. ...|+..++..
T Consensus 80 ~~~~------~~~~~~~~~~liiDdi~~l~----~-----------------------------~~---~~~L~~~~~~~ 117 (227)
T PRK08903 80 SPLL------AFDFDPEAELYAVDDVERLD----D-----------------------------AQ---QIALFNLFNRV 117 (227)
T ss_pred HhHH------HHhhcccCCEEEEeChhhcC----c-----------------------------hH---HHHHHHHHHHH
Confidence 5421 12334456799999999841 0 01 22344555443
Q ss_pred ccCCCCceEEEEecCCcC---cCCHhhhcCCCe--eeEEEccCCCHHHHHHHHHHhc
Q 011573 349 WSACGGERLIVFTTNYIE---KLDPALIRKGRM--DKHIELSHCSYEAFKVLAKNYL 400 (482)
Q Consensus 349 ~s~~~~~~iiI~TTN~~~---~LD~aL~RpGR~--d~~I~~~~p~~~~~~~l~~~~l 400 (482)
... +..++|+|++.+. .+.+.|.. || ...|+++.|+.+....++..+.
T Consensus 118 ~~~--~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 118 RAH--GQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred HHc--CCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 222 2244666665432 35678886 66 4799999999988877777554
No 116
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.42 E-value=6.4e-12 Score=129.53 Aligned_cols=157 Identities=17% Similarity=0.209 Sum_probs=106.3
Q ss_pred cccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhC---------Cceeecccccc
Q 011573 200 QTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLG---------YDLYDLELTAV 270 (482)
Q Consensus 200 ~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~---------~~i~~l~l~~~ 270 (482)
+.+++-++..+.|...+...+.+ ..+.++++|||||||||++++++++++. ..++.++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 56788888888887777655432 1245799999999999999999998763 45667776554
Q ss_pred cChH--------------------------HHHHHHH---hcCCCeEEEEeCCcccccccccccccccccccCCCCCCcc
Q 011573 271 KDNT--------------------------ELRKLLI---ETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPR 321 (482)
Q Consensus 271 ~~~~--------------------------~L~~l~~---~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~ 321 (482)
.+.. .+..++. ....+.||+|||+|.+.. .
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~---~------------------ 144 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG---D------------------ 144 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc---C------------------
Confidence 3211 1122222 224568999999999741 1
Q ss_pred cccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcC---cCCHhhhcCCCee-eEEEccCCCHHHHHHHHH
Q 011573 322 QKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIE---KLDPALIRKGRMD-KHIELSHCSYEAFKVLAK 397 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~---~LD~aL~RpGR~d-~~I~~~~p~~~~~~~l~~ 397 (482)
....+..|+...+.. ...+..+.+|+++|.++ .|++.+.+ ||. ..|+|++++.++...+++
T Consensus 145 ------------~~~~L~~l~~~~~~~-~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~ 209 (365)
T TIGR02928 145 ------------DDDLLYQLSRARSNG-DLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILE 209 (365)
T ss_pred ------------CcHHHHhHhcccccc-CCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHH
Confidence 011344454442111 11224578889998875 68889887 674 679999999999999999
Q ss_pred Hhcc
Q 011573 398 NYLN 401 (482)
Q Consensus 398 ~~l~ 401 (482)
..+.
T Consensus 210 ~r~~ 213 (365)
T TIGR02928 210 NRAE 213 (365)
T ss_pred HHHH
Confidence 8875
No 117
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.41 E-value=8.6e-13 Score=149.31 Aligned_cols=152 Identities=20% Similarity=0.272 Sum_probs=109.0
Q ss_pred CccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----------CCceeeccc
Q 011573 198 TFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----------GYDLYDLEL 267 (482)
Q Consensus 198 ~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----------~~~i~~l~l 267 (482)
.++.++|.++..+++++.+.. ..+++++|+||||||||++|+++|..+ +.+++.+++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 467788888888777665532 236789999999999999999999987 478898887
Q ss_pred cccc--------ChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHH
Q 011573 268 TAVK--------DNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVT 337 (482)
Q Consensus 268 ~~~~--------~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (482)
+.+. .+..++.++..+. .++||||||||.++. .... . ....
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~---~g~~-----------------------~---g~~~ 294 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIG---AGAA-----------------------E---GAID 294 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhc---CCCC-----------------------C---Cccc
Confidence 7652 2457888887653 589999999999863 1110 0 0011
Q ss_pred HHHHH-hhhcccccCCCCceEEEEecCCcC-----cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhc
Q 011573 338 LSGLL-NFIDGLWSACGGERLIVFTTNYIE-----KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYL 400 (482)
Q Consensus 338 ls~LL-~~ldg~~s~~~~~~iiI~TTN~~~-----~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l 400 (482)
.+.+| ..+. .+++.+|++|+..+ ..||+|.| ||. .|.++.|+.++...|++...
T Consensus 295 ~a~lLkp~l~------rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 295 AANILKPALA------RGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred HHHHhHHHHh------CCCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHH
Confidence 22233 2222 24577888888765 47999999 997 68999999999888887543
No 118
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.41 E-value=1.5e-12 Score=138.12 Aligned_cols=193 Identities=16% Similarity=0.272 Sum_probs=118.5
Q ss_pred eccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-----CCceeecc
Q 011573 192 VFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-----GYDLYDLE 266 (482)
Q Consensus 192 ~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-----~~~i~~l~ 266 (482)
...+..+|++.+..+.-.. ....+..+...+ |.. .++++||||||||||+|++|+|+++ +..++.++
T Consensus 114 ~l~~~~tfd~fv~g~~n~~-a~~~~~~~~~~~------~~~-~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 114 PLNPKYTFDNFVVGKSNRL-AHAAALAVAENP------GKA-YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCCCcccccccCCCcHH-HHHHHHHHHhCc------Ccc-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3445578999654333222 223344443321 222 2579999999999999999999998 45577776
Q ss_pred cccccCh-------HHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHH
Q 011573 267 LTAVKDN-------TELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLS 339 (482)
Q Consensus 267 l~~~~~~-------~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 339 (482)
+..+... .....+........+|+|||||.+. +.+ .+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~---~~~-------------------------------~~~~ 231 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLA---GKE-------------------------------RTQE 231 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhc---CCH-------------------------------HHHH
Confidence 6554210 1112223333467899999999852 111 1234
Q ss_pred HHHhhhcccccCCCCceEEEEecCCcCc---CCHhhhcCCCee--eEEEccCCCHHHHHHHHHHhccccCCCcHHH-HHH
Q 011573 340 GLLNFIDGLWSACGGERLIVFTTNYIEK---LDPALIRKGRMD--KHIELSHCSYEAFKVLAKNYLNIESHNLFDK-IGE 413 (482)
Q Consensus 340 ~LL~~ldg~~s~~~~~~iiI~TTN~~~~---LD~aL~RpGR~d--~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~-i~~ 413 (482)
.|+..++.+... +..+||.++..|.. |+++|.. ||. ..+++..|+.+++..|++.........+.++ +.-
T Consensus 232 ~l~~~~n~l~~~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ 307 (450)
T PRK00149 232 EFFHTFNALHEA--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEF 307 (450)
T ss_pred HHHHHHHHHHHC--CCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 456666655432 22455545555544 7799998 886 6899999999999999999876544344443 344
Q ss_pred HhcCCCCCHHHHHHHhc
Q 011573 414 LLGEAKMTPADVAEHLM 430 (482)
Q Consensus 414 l~~~~~~s~adi~~~l~ 430 (482)
++...+=+..++.+.|.
T Consensus 308 ia~~~~~~~R~l~~~l~ 324 (450)
T PRK00149 308 IAKNITSNVRELEGALN 324 (450)
T ss_pred HHcCcCCCHHHHHHHHH
Confidence 44445556666555443
No 119
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.40 E-value=9.3e-12 Score=125.63 Aligned_cols=161 Identities=19% Similarity=0.212 Sum_probs=108.8
Q ss_pred CceeeeccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC-----c
Q 011573 187 NWVHVVFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY-----D 261 (482)
Q Consensus 187 ~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~-----~ 261 (482)
.|. ....|.+|+++++.+++++.+...+. . |. ...+|||||||||||++++++++++.. .
T Consensus 6 ~w~--~kyrP~~~~~~~g~~~~~~~l~~~i~----~-------~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~ 70 (319)
T PRK00440 6 IWV--EKYRPRTLDEIVGQEEIVERLKSYVK----E-------KN--MPHLLFAGPPGTGKTTAALALARELYGEDWREN 70 (319)
T ss_pred ccc--hhhCCCcHHHhcCcHHHHHHHHHHHh----C-------CC--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccc
Confidence 354 45678999999999888777654442 1 11 125899999999999999999999732 3
Q ss_pred eeecccccccChHHHHHHH----Hhc----CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccc
Q 011573 262 LYDLELTAVKDNTELRKLL----IET----SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNN 333 (482)
Q Consensus 262 i~~l~l~~~~~~~~L~~l~----~~~----~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (482)
++.++.+.......++..+ ... ..+.+|+|||+|.+.+
T Consensus 71 ~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~---------------------------------- 116 (319)
T PRK00440 71 FLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS---------------------------------- 116 (319)
T ss_pred eEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH----------------------------------
Confidence 3444433332222222222 222 1356999999998621
Q ss_pred hHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCC
Q 011573 334 SQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESH 405 (482)
Q Consensus 334 ~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~ 405 (482)
.....|+..++... ....+|+++|.+..+.+++.+ |+. .++|+.++.++...+++.++.....
T Consensus 117 --~~~~~L~~~le~~~----~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~ 179 (319)
T PRK00440 117 --DAQQALRRTMEMYS----QNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGI 179 (319)
T ss_pred --HHHHHHHHHHhcCC----CCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCC
Confidence 11244666666542 235677888888888888988 776 6999999999999999888765443
No 120
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.1e-12 Score=136.42 Aligned_cols=205 Identities=24% Similarity=0.334 Sum_probs=147.2
Q ss_pred hCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc------cChHHHHHHHHhcC--CCeEEEEe
Q 011573 221 KSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV------KDNTELRKLLIETS--SKSIIVIE 292 (482)
Q Consensus 221 ~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~------~~~~~L~~l~~~~~--~~sIl~iD 292 (482)
..+..+...|..++++++++||||||||++++++|+. +.....++.... .+..+++.+|..+. .|+|+++|
T Consensus 5 ~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d 83 (494)
T COG0464 5 KEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFID 83 (494)
T ss_pred cCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeec
Confidence 4567788999999999999999999999999999999 444444433332 23556777777764 67999999
Q ss_pred CCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhh
Q 011573 293 DIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPAL 372 (482)
Q Consensus 293 diD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL 372 (482)
++|.+.+ .+. ...........+.|+..+|++. .+. ++++..||.+..+|+++
T Consensus 84 ~~~~~~~---~~~----------------------~~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~ 135 (494)
T COG0464 84 EIDALAP---KRS----------------------SDQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAK 135 (494)
T ss_pred hhhhccc---Ccc----------------------ccccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhH
Confidence 9999753 221 0123345678899999999997 455 88888999999999999
Q ss_pred hcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHHHHHhccc------C----CCCCHHHH
Q 011573 373 IRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADVAEHLMPK------T----FPADVEFS 441 (482)
Q Consensus 373 ~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi~~~l~~~------~----~~~~~~~~ 441 (482)
+|||||+..+.++.|+...+..+..................++. ..|++.+++..++... . ........
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~ 215 (494)
T COG0464 136 RRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVT 215 (494)
T ss_pred hCccccceeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCccccccc
Confidence 99999999999999999999888877654332222223333443 4599999998766431 0 12233444
Q ss_pred HHHHHHHHHHHHH
Q 011573 442 LRSLNQALELAKE 454 (482)
Q Consensus 442 ~~~l~~al~~~~~ 454 (482)
.++..++++....
T Consensus 216 ~~~~~~~l~~~~~ 228 (494)
T COG0464 216 EDDFEEALKKVLP 228 (494)
T ss_pred HHHHHHHHHhcCc
Confidence 5555555555443
No 121
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.38 E-value=2.9e-12 Score=134.14 Aligned_cols=191 Identities=14% Similarity=0.250 Sum_probs=115.2
Q ss_pred ccCCCCccccc-cChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-----CCceeecc
Q 011573 193 FEHPATFQTLA-MEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-----GYDLYDLE 266 (482)
Q Consensus 193 ~~~p~~~~~l~-~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-----~~~i~~l~ 266 (482)
..+..+|++.+ +... .. ....+..+...+ |. ...+++||||||||||+|++|+|+++ +..++.++
T Consensus 103 l~~~~tfd~fi~g~~n-~~-a~~~~~~~~~~~------~~-~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSN-RL-AHAAALAVAENP------GK-AYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCCcccccccCCcH-HH-HHHHHHHHHhCc------Cc-cCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 44557899944 4332 21 223344443321 22 23578999999999999999999987 56677776
Q ss_pred cccccCh-------HHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHH
Q 011573 267 LTAVKDN-------TELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLS 339 (482)
Q Consensus 267 l~~~~~~-------~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 339 (482)
+..+... ..+..+........+|+|||||.+. +.. .+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~---~~~-------------------------------~~~~ 219 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLA---GKE-------------------------------RTQE 219 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhc---CCH-------------------------------HHHH
Confidence 6543110 0111222223456799999999853 111 1223
Q ss_pred HHHhhhcccccCCCCceEEEEecCCcCc---CCHhhhcCCCee--eEEEccCCCHHHHHHHHHHhccccCCCcHHHH-HH
Q 011573 340 GLLNFIDGLWSACGGERLIVFTTNYIEK---LDPALIRKGRMD--KHIELSHCSYEAFKVLAKNYLNIESHNLFDKI-GE 413 (482)
Q Consensus 340 ~LL~~ldg~~s~~~~~~iiI~TTN~~~~---LD~aL~RpGR~d--~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i-~~ 413 (482)
.|++.++.+... +..+||.+++.|.. +++.|.. ||. ..++++.|+.++|..|++..+......+.+++ ..
T Consensus 220 ~l~~~~n~~~~~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ 295 (405)
T TIGR00362 220 EFFHTFNALHEN--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEF 295 (405)
T ss_pred HHHHHHHHHHHC--CCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 455555555332 22445444445544 6788888 886 57999999999999999998876544444433 44
Q ss_pred HhcCCCCCHHHHHHHhc
Q 011573 414 LLGEAKMTPADVAEHLM 430 (482)
Q Consensus 414 l~~~~~~s~adi~~~l~ 430 (482)
++....-+..++.+.+.
T Consensus 296 ia~~~~~~~r~l~~~l~ 312 (405)
T TIGR00362 296 IAKNIRSNVRELEGALN 312 (405)
T ss_pred HHHhcCCCHHHHHHHHH
Confidence 44444556666655443
No 122
>PHA02244 ATPase-like protein
Probab=99.38 E-value=6e-12 Score=127.52 Aligned_cols=140 Identities=17% Similarity=0.237 Sum_probs=91.3
Q ss_pred ChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccc----c----cChHHH
Q 011573 205 EPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTA----V----KDNTEL 276 (482)
Q Consensus 205 ~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~----~----~~~~~L 276 (482)
...........+..++.. +..+||+||||||||++|++||..++.+++.++... + .....+
T Consensus 101 ~sp~~~~~~~ri~r~l~~-----------~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~ 169 (383)
T PHA02244 101 SNPTFHYETADIAKIVNA-----------NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKF 169 (383)
T ss_pred CCHHHHHHHHHHHHHHhc-----------CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccc
Confidence 334444444556566554 468999999999999999999999999999876320 0 000111
Q ss_pred H--HHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc--------
Q 011573 277 R--KLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID-------- 346 (482)
Q Consensus 277 ~--~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld-------- 346 (482)
. .++.......+|+|||||.+. ..++..|...++
T Consensus 170 ~dgpLl~A~~~GgvLiLDEId~a~------------------------------------p~vq~~L~~lLd~r~l~l~g 213 (383)
T PHA02244 170 HETPFYEAFKKGGLFFIDEIDASI------------------------------------PEALIIINSAIANKFFDFAD 213 (383)
T ss_pred cchHHHHHhhcCCEEEEeCcCcCC------------------------------------HHHHHHHHHHhccCeEEecC
Confidence 1 333445678999999999852 112233333333
Q ss_pred ccccCCCCceEEEEecCCc-----------CcCCHhhhcCCCeeeEEEccCCCHHHHHHHH
Q 011573 347 GLWSACGGERLIVFTTNYI-----------EKLDPALIRKGRMDKHIELSHCSYEAFKVLA 396 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~-----------~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~ 396 (482)
+... ...+.-+|+|+|.+ ..|++|++. || .+|+|+||+ +.-..|.
T Consensus 214 ~~i~-~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~-~~E~~i~ 269 (383)
T PHA02244 214 ERVT-AHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDE-KIEHLIS 269 (383)
T ss_pred cEEe-cCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCc-HHHHHHh
Confidence 2211 22456799999973 578999999 99 589999998 3333443
No 123
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.38 E-value=2.8e-12 Score=127.04 Aligned_cols=151 Identities=21% Similarity=0.284 Sum_probs=99.9
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc-eeeccccccc-
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD-LYDLELTAVK- 271 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~-i~~l~l~~~~- 271 (482)
-.|.++++.+|.+++..+ -..+..++.. + --..++||||||||||+||+.||+...-+ +..++++...
T Consensus 132 mRPktL~dyvGQ~hlv~q-~gllrs~ieq-------~--~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a 201 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQ-DGLLRSLIEQ-------N--RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA 201 (554)
T ss_pred cCcchHHHhcchhhhcCc-chHHHHHHHc-------C--CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc
Confidence 367888888887765543 2222233322 1 12479999999999999999999988655 2233444443
Q ss_pred ChHHHHHHHHhc-------CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhh
Q 011573 272 DNTELRKLLIET-------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNF 344 (482)
Q Consensus 272 ~~~~L~~l~~~~-------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 344 (482)
....++.+|.++ .++.|||||||+.+- +.....||-.
T Consensus 202 ~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN------------------------------------ksQQD~fLP~ 245 (554)
T KOG2028|consen 202 KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN------------------------------------KSQQDTFLPH 245 (554)
T ss_pred chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh------------------------------------hhhhhcccce
Confidence 345688888776 478999999999851 1111224544
Q ss_pred hcccccCCCCceEEEEe-c-CCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHh
Q 011573 345 IDGLWSACGGERLIVFT-T-NYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNY 399 (482)
Q Consensus 345 ldg~~s~~~~~~iiI~T-T-N~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~ 399 (482)
++. +.+++|++ | |..-.|..||+. |+- .+.+...+.+....|+.+-
T Consensus 246 VE~------G~I~lIGATTENPSFqln~aLlS--RC~-VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 246 VEN------GDITLIGATTENPSFQLNAALLS--RCR-VFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred ecc------CceEEEecccCCCccchhHHHHh--ccc-eeEeccCCHHHHHHHHHHH
Confidence 432 34777774 4 555679999999 884 5666666777777777764
No 124
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.37 E-value=5.3e-13 Score=118.49 Aligned_cols=105 Identities=28% Similarity=0.420 Sum_probs=73.8
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHHHHHHh---------------cCCCeEEEEeCCcccccc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIE---------------TSSKSIIVIEDIDCSLDL 300 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~~l~~~---------------~~~~sIl~iDdiD~~~~~ 300 (482)
++||+||||||||++++.+|..++.+++.+.++...+...|.....- ...++|++||||+.+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a--- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRA--- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG----
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccC---
Confidence 48999999999999999999999999999999887666655322211 125799999999974
Q ss_pred cccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccc----------cCCC-----CceEEEEecCCc
Q 011573 301 TGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLW----------SACG-----GERLIVFTTNYI 365 (482)
Q Consensus 301 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~----------s~~~-----~~~iiI~TTN~~ 365 (482)
...++..|++.+|.-. .... .+..+|+|+|..
T Consensus 78 ---------------------------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~ 124 (139)
T PF07728_consen 78 ---------------------------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPR 124 (139)
T ss_dssp ----------------------------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSS
T ss_pred ---------------------------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCC
Confidence 1234444555554211 0001 137899999999
Q ss_pred C----cCCHhhhcCCCe
Q 011573 366 E----KLDPALIRKGRM 378 (482)
Q Consensus 366 ~----~LD~aL~RpGR~ 378 (482)
+ .|++||++ ||
T Consensus 125 ~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 125 DKGRKELSPALLD--RF 139 (139)
T ss_dssp T--TTTTCHHHHT--T-
T ss_pred CCCcCcCCHHHHh--hC
Confidence 8 89999999 87
No 125
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.37 E-value=7.6e-12 Score=121.44 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=94.9
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhC---Cceeeccccc
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLG---YDLYDLELTA 269 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~---~~i~~l~l~~ 269 (482)
..+..+|++.+-. . -+..+..+...... +..+.++||||||||||+|++|+|+++. ..+..+++..
T Consensus 15 ~~~~~~fd~f~~~-~-n~~a~~~l~~~~~~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 15 LPDDETFASFYPG-D-NDSLLAALQNALRQ---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCCcCCccccccC-c-cHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 3344788887743 1 12233444443321 1235799999999999999999999864 3444444443
Q ss_pred ccChHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccc
Q 011573 270 VKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLW 349 (482)
Q Consensus 270 ~~~~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~ 349 (482)
... ....++....+-.+|+||||+.+. +. ...-..|.+.++...
T Consensus 84 ~~~--~~~~~~~~~~~~dlliiDdi~~~~---~~-------------------------------~~~~~~lf~l~n~~~ 127 (235)
T PRK08084 84 RAW--FVPEVLEGMEQLSLVCIDNIECIA---GD-------------------------------ELWEMAIFDLYNRIL 127 (235)
T ss_pred Hhh--hhHHHHHHhhhCCEEEEeChhhhc---CC-------------------------------HHHHHHHHHHHHHHH
Confidence 211 112222223334689999999852 11 111222334444332
Q ss_pred cCCCCceEEEEecCCcCc---CCHhhhcCCCee--eEEEccCCCHHHHHHHHHHhc
Q 011573 350 SACGGERLIVFTTNYIEK---LDPALIRKGRMD--KHIELSHCSYEAFKVLAKNYL 400 (482)
Q Consensus 350 s~~~~~~iiI~TTN~~~~---LD~aL~RpGR~d--~~I~~~~p~~~~~~~l~~~~l 400 (482)
.. +...+++.+++.|.. +.|.|+. |+. ..+++..|+.+++.++++...
T Consensus 128 e~-g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 128 ES-GRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred Hc-CCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHH
Confidence 21 222455555566655 5799999 885 799999999999999987643
No 126
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.37 E-value=7.7e-12 Score=109.79 Aligned_cols=116 Identities=29% Similarity=0.385 Sum_probs=81.4
Q ss_pred cCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccChHHHH-----------HHHHhcCCCeEEEEeCCcccc
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDNTELR-----------KLLIETSSKSIIVIEDIDCSL 298 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~~~L~-----------~l~~~~~~~sIl~iDdiD~~~ 298 (482)
..+.++++||||||||++++++++.+ +.+++.+++.......... ........+.+|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 35689999999999999999999999 8899998887764332222 122233578999999999741
Q ss_pred cccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccC--CCCceEEEEecCCcC--cCCHhhhc
Q 011573 299 DLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSA--CGGERLIVFTTNYIE--KLDPALIR 374 (482)
Q Consensus 299 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~--~~~~~iiI~TTN~~~--~LD~aL~R 374 (482)
......++..+...... ...+..+|+|||... .+++.+..
T Consensus 98 ------------------------------------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ 141 (151)
T cd00009 98 ------------------------------------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD 141 (151)
T ss_pred ------------------------------------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh
Confidence 11223344444443211 123477888988887 78889888
Q ss_pred CCCeeeEEEccC
Q 011573 375 KGRMDKHIELSH 386 (482)
Q Consensus 375 pGR~d~~I~~~~ 386 (482)
||+.+|.+++
T Consensus 142 --r~~~~i~~~~ 151 (151)
T cd00009 142 --RLDIRIVIPL 151 (151)
T ss_pred --hhccEeecCC
Confidence 9998888763
No 127
>PRK08727 hypothetical protein; Validated
Probab=99.36 E-value=1.4e-11 Score=119.35 Aligned_cols=157 Identities=24% Similarity=0.326 Sum_probs=99.3
Q ss_pred eccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccc
Q 011573 192 VFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELT 268 (482)
Q Consensus 192 ~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~ 268 (482)
......+|++.+..+.-. +..+..... | .+...++||||+|||||+|+.|+|+++ +..+..+++.
T Consensus 11 ~~~~~~~f~~f~~~~~n~---~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 11 RYPSDQRFDSYIAAPDGL---LAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred CCCCcCChhhccCCcHHH---HHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 344557899987666421 122211111 1 133569999999999999999998875 5555555554
Q ss_pred cccChHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhccc
Q 011573 269 AVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGL 348 (482)
Q Consensus 269 ~~~~~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 348 (482)
... ..+...+....+.-+|+|||||.+. +.. ..... +++.++..
T Consensus 79 ~~~--~~~~~~~~~l~~~dlLiIDDi~~l~---~~~----------------------------~~~~~---lf~l~n~~ 122 (233)
T PRK08727 79 AAA--GRLRDALEALEGRSLVALDGLESIA---GQR----------------------------EDEVA---LFDFHNRA 122 (233)
T ss_pred Hhh--hhHHHHHHHHhcCCEEEEeCccccc---CCh----------------------------HHHHH---HHHHHHHH
Confidence 432 3455666666777899999999853 111 11223 33444433
Q ss_pred ccCCCCceEEEEecCCcCcC---CHhhhcCCCe--eeEEEccCCCHHHHHHHHHHhc
Q 011573 349 WSACGGERLIVFTTNYIEKL---DPALIRKGRM--DKHIELSHCSYEAFKVLAKNYL 400 (482)
Q Consensus 349 ~s~~~~~~iiI~TTN~~~~L---D~aL~RpGR~--d~~I~~~~p~~~~~~~l~~~~l 400 (482)
... +..+|+.+.+.|..+ +|+|.+ || -.+++++.|+.+++..+++...
T Consensus 123 ~~~--~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 123 RAA--GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred HHc--CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHH
Confidence 221 123444444566655 799998 85 4689999999999999999754
No 128
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.36 E-value=2.8e-11 Score=123.35 Aligned_cols=130 Identities=22% Similarity=0.254 Sum_probs=91.5
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHH------HHHH------HhcCC----C--eEEEEeCCc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTEL------RKLL------IETSS----K--SIIVIEDID 295 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L------~~l~------~~~~~----~--sIl~iDdiD 295 (482)
.+.+||-||||||||++++++|..++.+++.+.|+.-.....+ .... .-.+. . +|+++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 4789999999999999999999999999999999865433332 1110 00111 1 499999999
Q ss_pred ccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcc-------cc-cCCCCceEEEEecC----
Q 011573 296 CSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDG-------LW-SACGGERLIVFTTN---- 363 (482)
Q Consensus 296 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-------~~-s~~~~~~iiI~TTN---- 363 (482)
.. ...+.+.||..|+. .. -.-....++|+|+|
T Consensus 123 ra------------------------------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~ 166 (329)
T COG0714 123 RA------------------------------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEY 166 (329)
T ss_pred cC------------------------------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCcccc
Confidence 84 23466777777764 11 11224467888889
Q ss_pred -CcCcCCHhhhcCCCeeeEEEccCCC-HHHHHHHHHHhcc
Q 011573 364 -YIEKLDPALIRKGRMDKHIELSHCS-YEAFKVLAKNYLN 401 (482)
Q Consensus 364 -~~~~LD~aL~RpGR~d~~I~~~~p~-~~~~~~l~~~~l~ 401 (482)
....|++|+++ ||-..+.++||. .++...+......
T Consensus 167 ~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 167 EGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred CCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCcc
Confidence 45568999999 999999999994 4455555554443
No 129
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.36 E-value=6.8e-12 Score=132.50 Aligned_cols=156 Identities=17% Similarity=0.328 Sum_probs=122.8
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc-------------
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD------------- 261 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~------------- 261 (482)
.|.+|++|+|.+.+.+.|.+.+.. + ....+|||.||.||||||+++.+|..+++.
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~---~---------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALEN---G---------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHh---C---------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 588999999999988888665542 1 124689999999999999999999988654
Q ss_pred -----------eeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCccccc
Q 011573 262 -----------LYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKL 324 (482)
Q Consensus 262 -----------i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 324 (482)
++.+|..+-..-++++.+..+.. +.-|++|||++.+
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML--------------------------- 131 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML--------------------------- 131 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh---------------------------
Confidence 22223333344567788877763 4569999999986
Q ss_pred ccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccC
Q 011573 325 GKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIES 404 (482)
Q Consensus 325 ~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~ 404 (482)
++..++.||..++.- +..+++|++|..+.++++.++. |+. ++.|...+.++....+..++..+.
T Consensus 132 ---------S~~afNALLKTLEEP----P~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~ 195 (515)
T COG2812 132 ---------SKQAFNALLKTLEEP----PSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEG 195 (515)
T ss_pred ---------hHHHHHHHhcccccC----ccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcC
Confidence 345788899888864 5679999999999999999999 885 888999999999888888887654
Q ss_pred C
Q 011573 405 H 405 (482)
Q Consensus 405 ~ 405 (482)
.
T Consensus 196 I 196 (515)
T COG2812 196 I 196 (515)
T ss_pred C
Confidence 4
No 130
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=4.1e-11 Score=123.27 Aligned_cols=153 Identities=20% Similarity=0.270 Sum_probs=111.5
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc------------
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD------------ 261 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~------------ 261 (482)
.+|+++++|+|.+++++.+.+.+.. | ..+..|||+||+|+||+++|.++|+.+-..
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 5899999999999998888654432 1 235689999999999999999999988321
Q ss_pred ----------------------eeecccc--cc-------cChHHHHHHHHhc------CCCeEEEEeCCcccccccccc
Q 011573 262 ----------------------LYDLELT--AV-------KDNTELRKLLIET------SSKSIIVIEDIDCSLDLTGQR 304 (482)
Q Consensus 262 ----------------------i~~l~l~--~~-------~~~~~L~~l~~~~------~~~sIl~iDdiD~~~~~~~~r 304 (482)
++.+... .- -.-+.++.+.... ..+-|++|||+|.+
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m------- 153 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM------- 153 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-------
Confidence 1111110 00 0124455554433 25679999999985
Q ss_pred cccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEc
Q 011573 305 RKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIEL 384 (482)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~ 384 (482)
+....+.||..++.. +...++|++|+.++.+.|.++. |+. .|.|
T Consensus 154 -----------------------------~~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~S--Rc~-~i~l 197 (365)
T PRK07471 154 -----------------------------NANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRS--RCR-KLRL 197 (365)
T ss_pred -----------------------------CHHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhc--cce-EEEC
Confidence 234566788888864 3447888999999999999888 885 9999
Q ss_pred cCCCHHHHHHHHHHhcc
Q 011573 385 SHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 385 ~~p~~~~~~~l~~~~l~ 401 (482)
+.|+.++..+++.....
T Consensus 198 ~~l~~~~i~~~L~~~~~ 214 (365)
T PRK07471 198 RPLAPEDVIDALAAAGP 214 (365)
T ss_pred CCCCHHHHHHHHHHhcc
Confidence 99999999888887653
No 131
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.33 E-value=1.1e-11 Score=138.71 Aligned_cols=156 Identities=17% Similarity=0.312 Sum_probs=109.2
Q ss_pred cccccChHHHHHHHHHHHHHhhCHHHHHHhCCCc---Cc-cccccCCCCchHHHHHHHHHHHhCCceeecccccccChH-
Q 011573 200 QTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAW---KR-GYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNT- 274 (482)
Q Consensus 200 ~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~---~r-g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~- 274 (482)
..|+|.++.++.|.+.+... +.|... |. .+||+||||||||++|+++|..++.+++.++++......
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~ 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHT 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhccc
Confidence 34567777777666555322 233321 23 489999999999999999999999999999887753221
Q ss_pred ------------------HHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHH
Q 011573 275 ------------------ELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQV 336 (482)
Q Consensus 275 ------------------~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (482)
.|...+. ....+||+|||||.+- ..
T Consensus 526 ~~~lig~~~gyvg~~~~~~l~~~~~-~~p~~VvllDEieka~------------------------------------~~ 568 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQGGLLTEAVR-KHPHCVLLLDEIEKAH------------------------------------PD 568 (731)
T ss_pred HHHHhcCCCCCcccchhhHHHHHHH-hCCCeEEEEechhhcC------------------------------------HH
Confidence 1222222 2346999999999851 23
Q ss_pred HHHHHHhhhcccc--cCCC-----CceEEEEecCCcC-------------------------cCCHhhhcCCCeeeEEEc
Q 011573 337 TLSGLLNFIDGLW--SACG-----GERLIVFTTNYIE-------------------------KLDPALIRKGRMDKHIEL 384 (482)
Q Consensus 337 ~ls~LL~~ldg~~--s~~~-----~~~iiI~TTN~~~-------------------------~LD~aL~RpGR~d~~I~~ 384 (482)
..+.||..||.-. ...| .+.+||+|||... .+.|.|+. |||..|.|
T Consensus 569 ~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F 646 (731)
T TIGR02639 569 IYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHF 646 (731)
T ss_pred HHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEc
Confidence 5566888887431 1111 3468999998631 25778887 99999999
Q ss_pred cCCCHHHHHHHHHHhccc
Q 011573 385 SHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 385 ~~p~~~~~~~l~~~~l~~ 402 (482)
.+.+.++...|++..+..
T Consensus 647 ~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 647 NPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998753
No 132
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=6e-11 Score=120.05 Aligned_cols=148 Identities=17% Similarity=0.258 Sum_probs=108.7
Q ss_pred CccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC--------ceeecccc-
Q 011573 198 TFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY--------DLYDLELT- 268 (482)
Q Consensus 198 ~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~--------~i~~l~l~- 268 (482)
+|++++|.+.+++.+...+.. ...+..||||||+|+|||++|+++|..+.. +++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 589999999988887655521 134578999999999999999999998732 33333221
Q ss_pred -cccChHHHHHHHHhc---C---CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHH
Q 011573 269 -AVKDNTELRKLLIET---S---SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGL 341 (482)
Q Consensus 269 -~~~~~~~L~~l~~~~---~---~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 341 (482)
....-..++.+.... + ..-|++||++|.+ +....+.|
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m------------------------------------~~~a~naL 113 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM------------------------------------TEQAQNAF 113 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhc------------------------------------CHHHHHHH
Confidence 111345677766533 2 4579999999985 12245678
Q ss_pred HhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhc
Q 011573 342 LNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYL 400 (482)
Q Consensus 342 L~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l 400 (482)
|..|+.. +++.++|++|++++.|.|.++. |+. +++|..|+.++....+...+
T Consensus 114 LK~LEep----p~~t~~il~~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 114 LKTIEEP----PKGVFIILLCENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred HHHhcCC----CCCeEEEEEeCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHh
Confidence 9998864 3557888888899999999998 885 99999999998887776554
No 133
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.32 E-value=3.4e-11 Score=131.92 Aligned_cols=155 Identities=19% Similarity=0.322 Sum_probs=102.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----------CCceee
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----------GYDLYD 264 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----------~~~i~~ 264 (482)
.|.+|++++|.+...+.++..+. .+.+..++|+||||||||++++++++.. +.+++.
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 48899999999888887654431 1235679999999999999999998766 346777
Q ss_pred cccccccC-hHHH----------------HHHHHh------------cCCCeEEEEeCCcccccccccccccccccccCC
Q 011573 265 LELTAVKD-NTEL----------------RKLLIE------------TSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEG 315 (482)
Q Consensus 265 l~l~~~~~-~~~L----------------~~l~~~------------~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~ 315 (482)
+++..+.. ...+ +..+.. ..+..+|||||++.+-.
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~---------------- 279 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP---------------- 279 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH----------------
Confidence 87765421 1111 011111 11457999999998521
Q ss_pred CCCCcccccccccccccchHHHHHHHHhhhccc--------c----------------cCCCCceEEEE-ecCCcCcCCH
Q 011573 316 NDKDPRQKLGKEERETNNSQVTLSGLLNFIDGL--------W----------------SACGGERLIVF-TTNYIEKLDP 370 (482)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~--------~----------------s~~~~~~iiI~-TTN~~~~LD~ 370 (482)
.....|+..|+.- + ......+++|+ ||+.++.+++
T Consensus 280 --------------------~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~ 339 (615)
T TIGR02903 280 --------------------LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINP 339 (615)
T ss_pred --------------------HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCH
Confidence 1112233333210 0 01112245554 6678889999
Q ss_pred hhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 371 ALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 371 aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
+|++ ||. .+.|++++.++...|++.++.
T Consensus 340 aLrS--R~~-~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 340 ALRS--RCA-EVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred HHHh--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 9998 997 678999999999999998765
No 134
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.31 E-value=3.2e-11 Score=112.86 Aligned_cols=124 Identities=25% Similarity=0.313 Sum_probs=90.5
Q ss_pred cCccccccCCCCchHHHHHHHHHHHhCCc------------------------eeecccccc-cChHHHHHHHHhcC---
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLLGYD------------------------LYDLELTAV-KDNTELRKLLIETS--- 284 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l~~~------------------------i~~l~l~~~-~~~~~L~~l~~~~~--- 284 (482)
.+..||||||||+|||++++++|..+... +..++.... ..-+.++.+...+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 45689999999999999999999997432 222222111 12345655554432
Q ss_pred ---CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEe
Q 011573 285 ---SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFT 361 (482)
Q Consensus 285 ---~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~T 361 (482)
.+.|++|||+|.+- ....+.||..|+.. +...++|++
T Consensus 93 ~~~~~kviiide~~~l~------------------------------------~~~~~~Ll~~le~~----~~~~~~il~ 132 (188)
T TIGR00678 93 QESGRRVVIIEDAERMN------------------------------------EAAANALLKTLEEP----PPNTLFILI 132 (188)
T ss_pred ccCCeEEEEEechhhhC------------------------------------HHHHHHHHHHhcCC----CCCeEEEEE
Confidence 46799999999862 12355688888764 234678888
Q ss_pred cCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHh
Q 011573 362 TNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNY 399 (482)
Q Consensus 362 TN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~ 399 (482)
||++..|++++.+ |+. .++|++|+.++...++...
T Consensus 133 ~~~~~~l~~~i~s--r~~-~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 133 TPSPEKLLPTIRS--RCQ-VLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred ECChHhChHHHHh--hcE-EeeCCCCCHHHHHHHHHHc
Confidence 8888999999998 885 8999999999988887765
No 135
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.31 E-value=6.4e-11 Score=123.38 Aligned_cols=156 Identities=20% Similarity=0.257 Sum_probs=103.6
Q ss_pred cccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-----CCceeecccccccCh-
Q 011573 200 QTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-----GYDLYDLELTAVKDN- 273 (482)
Q Consensus 200 ~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-----~~~i~~l~l~~~~~~- 273 (482)
+.+++-++..++|...+...+.+ ..+..+++|||||||||++++.+++++ +..++.+++....+.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 55677777767766665544432 123568999999999999999999987 467777777543221
Q ss_pred ----------------------HHH-HH---HHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccc
Q 011573 274 ----------------------TEL-RK---LLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKE 327 (482)
Q Consensus 274 ----------------------~~L-~~---l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 327 (482)
.++ .. .+.....+.||+|||+|.+.. ..
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~---~~----------------------- 154 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE---KE----------------------- 154 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc---cC-----------------------
Confidence 111 11 111223458999999998641 10
Q ss_pred cccccchHHHHHHHHhhhcccccCCCCceEEEEecCCc---CcCCHhhhcCCCee-eEEEccCCCHHHHHHHHHHhcc
Q 011573 328 ERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYI---EKLDPALIRKGRMD-KHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 328 ~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~---~~LD~aL~RpGR~d-~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
....+..|+..++... +..+.+|+++|.. +.++|.+.. |+. ..|.|++++.++...+++..+.
T Consensus 155 ------~~~~l~~l~~~~~~~~---~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 155 ------GNDVLYSLLRAHEEYP---GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred ------CchHHHHHHHhhhccC---CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHH
Confidence 1234566666665442 2357788888876 457888876 553 5789999999999999988764
No 136
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.31 E-value=1.7e-10 Score=118.11 Aligned_cols=180 Identities=17% Similarity=0.184 Sum_probs=118.0
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc-------ee---
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD-------LY--- 263 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~-------i~--- 263 (482)
.||+.|+.|+|.+++++.+...+.. | ..+..+||+||+|+|||+++.++|..+... ..
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 5899999999999988877544421 1 224579999999999999999999998541 10
Q ss_pred --------------------ecccc---------cccChHHHHHHH---Hhc---CCCeEEEEeCCcccccccccccccc
Q 011573 264 --------------------DLELT---------AVKDNTELRKLL---IET---SSKSIIVIEDIDCSLDLTGQRRKKK 308 (482)
Q Consensus 264 --------------------~l~l~---------~~~~~~~L~~l~---~~~---~~~sIl~iDdiD~~~~~~~~r~~~~ 308 (482)
.+.-. ..-..+.++.+. ... ...-|++|||+|.+
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l----------- 153 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM----------- 153 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------
Confidence 01000 000123344433 222 24569999999986
Q ss_pred cccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCC
Q 011573 309 EKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCS 388 (482)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~ 388 (482)
+....+.||..|+.. +...++|+.|+.++.|.|.++. |+ .++.|+.|+
T Consensus 154 -------------------------~~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~ 201 (351)
T PRK09112 154 -------------------------NRNAANAILKTLEEP----PARALFILISHSSGRLLPTIRS--RC-QPISLKPLD 201 (351)
T ss_pred -------------------------CHHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHh--hc-cEEEecCCC
Confidence 233456688888864 2346777778889999999988 88 599999999
Q ss_pred HHHHHHHHHHhccccCCCcHHHHHHHhcCCCCCHHHHHHHh
Q 011573 389 YEAFKVLAKNYLNIESHNLFDKIGELLGEAKMTPADVAEHL 429 (482)
Q Consensus 389 ~~~~~~l~~~~l~~~~~~~~~~i~~l~~~~~~s~adi~~~l 429 (482)
.++...++........ ...+.+..++...+=+|....+++
T Consensus 202 ~~~~~~~L~~~~~~~~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 202 DDELKKALSHLGSSQG-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred HHHHHHHHHHhhcccC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999887422211 112233444444455555544443
No 137
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.31 E-value=1.4e-11 Score=124.85 Aligned_cols=156 Identities=21% Similarity=0.275 Sum_probs=103.0
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-------CCceeec--
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-------GYDLYDL-- 265 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-------~~~i~~l-- 265 (482)
.|.+|+.++|.++.++.++-.+.. +-..++||+||||||||++++++|+.+ +.++-..
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 577899999999998877542211 112579999999999999999999998 3321110
Q ss_pred ----cc--------------------c----cccChHHHHHHHHh-----------cCCCeEEEEeCCcccccccccccc
Q 011573 266 ----EL--------------------T----AVKDNTELRKLLIE-----------TSSKSIIVIEDIDCSLDLTGQRRK 306 (482)
Q Consensus 266 ----~l--------------------~----~~~~~~~L~~l~~~-----------~~~~sIl~iDdiD~~~~~~~~r~~ 306 (482)
++ + .+-..-.+...+.. .....+|++|||+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl--------- 140 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL--------- 140 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC---------
Confidence 00 0 00011111111111 123469999999985
Q ss_pred cccccccCCCCCCcccccccccccccchHHHHHHHHhhhccc---------ccCCCCceEEEEecCCcC-cCCHhhhcCC
Q 011573 307 KKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGL---------WSACGGERLIVFTTNYIE-KLDPALIRKG 376 (482)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~---------~s~~~~~~iiI~TTN~~~-~LD~aL~RpG 376 (482)
...+++.|++.|+.- ....+...++|+|+|..+ .|+++|+.
T Consensus 141 ---------------------------~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld-- 191 (334)
T PRK13407 141 ---------------------------EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD-- 191 (334)
T ss_pred ---------------------------CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--
Confidence 234667777777532 111223467888888755 69999999
Q ss_pred CeeeEEEccCCCH-HHHHHHHHHhcc
Q 011573 377 RMDKHIELSHCSY-EAFKVLAKNYLN 401 (482)
Q Consensus 377 R~d~~I~~~~p~~-~~~~~l~~~~l~ 401 (482)
||.+.|.+++|.. +++.++++....
T Consensus 192 RF~~~v~v~~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 192 RFGLSVEVRSPRDVETRVEVIRRRDA 217 (334)
T ss_pred hcceEEEcCCCCcHHHHHHHHHHhhc
Confidence 9999999999977 888999987543
No 138
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.30 E-value=2.6e-11 Score=127.82 Aligned_cols=138 Identities=20% Similarity=0.348 Sum_probs=89.3
Q ss_pred ccccccCCCCchHHHHHHHHHHHh---CCceeecccccccCh-------HHHHHHHHhcCCCeEEEEeCCcccccccccc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDN-------TELRKLLIETSSKSIIVIEDIDCSLDLTGQR 304 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~-------~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r 304 (482)
.+++||||||+|||+|++|+|+++ +..++.++...+... ..+..+-.......+|+||||+.+. +..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~---~k~ 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFS---GKG 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhc---CCh
Confidence 679999999999999999999987 567776665443110 0111111123467799999999852 111
Q ss_pred cccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCC-c---CcCCHhhhcCCCee-
Q 011573 305 RKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNY-I---EKLDPALIRKGRMD- 379 (482)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~-~---~~LD~aL~RpGR~d- 379 (482)
.+...|+..++.+... + ..+|+|+|. | ..+++.|++ ||.
T Consensus 219 -------------------------------~~qeelf~l~N~l~~~-~--k~IIlts~~~p~~l~~l~~rL~S--R~~~ 262 (445)
T PRK12422 219 -------------------------------ATQEEFFHTFNSLHTE-G--KLIVISSTCAPQDLKAMEERLIS--RFEW 262 (445)
T ss_pred -------------------------------hhHHHHHHHHHHHHHC-C--CcEEEecCCCHHHHhhhHHHHHh--hhcC
Confidence 1222344444433221 1 345666654 4 357899999 885
Q ss_pred -eEEEccCCCHHHHHHHHHHhccccCCCcHHHH
Q 011573 380 -KHIELSHCSYEAFKVLAKNYLNIESHNLFDKI 411 (482)
Q Consensus 380 -~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i 411 (482)
..+.++.|+.+.+..+++.........+.+++
T Consensus 263 Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~ev 295 (445)
T PRK12422 263 GIAIPLHPLTKEGLRSFLERKAEALSIRIEETA 295 (445)
T ss_pred CeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 89999999999999999988765443343443
No 139
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.28 E-value=1.5e-11 Score=129.73 Aligned_cols=191 Identities=15% Similarity=0.285 Sum_probs=111.9
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-----CCceeeccc
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-----GYDLYDLEL 267 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-----~~~i~~l~l 267 (482)
..+..+|++.+..+.-.. ....+..+..++ | +..+++||||||||||+|++|+|+++ +..++.+++
T Consensus 98 l~~~~tFdnFv~g~~n~~-a~~~~~~~~~~~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSF-AYHAALEVAKNP------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CCCCCcccccccCCchHH-HHHHHHHHHhCc------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 445578999874443332 223344443322 2 23569999999999999999999986 345666665
Q ss_pred ccccCh-------HHHHHHHHhc-CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHH
Q 011573 268 TAVKDN-------TELRKLLIET-SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLS 339 (482)
Q Consensus 268 ~~~~~~-------~~L~~l~~~~-~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 339 (482)
..+... ..+....... ..+.+|+|||++.+.+ .. .+..
T Consensus 169 ~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~---~~-------------------------------~~q~ 214 (440)
T PRK14088 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIG---KT-------------------------------GVQT 214 (440)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcC---cH-------------------------------HHHH
Confidence 443110 1111211122 2578999999998641 11 1123
Q ss_pred HHHhhhcccccCCCCceEEEEecCCcCc---CCHhhhcCCCe--eeEEEccCCCHHHHHHHHHHhccccCCCcHHHH-HH
Q 011573 340 GLLNFIDGLWSACGGERLIVFTTNYIEK---LDPALIRKGRM--DKHIELSHCSYEAFKVLAKNYLNIESHNLFDKI-GE 413 (482)
Q Consensus 340 ~LL~~ldg~~s~~~~~~iiI~TTN~~~~---LD~aL~RpGR~--d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i-~~ 413 (482)
.|+..++.+... +..+||.+.++|.. +++.|.. || ...+.+..|+.+.|..|++.........+.+++ .-
T Consensus 215 elf~~~n~l~~~--~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~ 290 (440)
T PRK14088 215 ELFHTFNELHDS--GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNF 290 (440)
T ss_pred HHHHHHHHHHHc--CCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 345555554332 22344444455554 5677887 66 467899999999999999998765444444444 33
Q ss_pred HhcCCCCCHHHHHHHhc
Q 011573 414 LLGEAKMTPADVAEHLM 430 (482)
Q Consensus 414 l~~~~~~s~adi~~~l~ 430 (482)
++....=+.+++...+.
T Consensus 291 Ia~~~~~~~R~L~g~l~ 307 (440)
T PRK14088 291 VAENVDDNLRRLRGAII 307 (440)
T ss_pred HHhccccCHHHHHHHHH
Confidence 44444445555555443
No 140
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.27 E-value=4.3e-11 Score=123.08 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=49.9
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHhCC-CcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARIGR-AWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV 270 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~-~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~ 270 (482)
.|+|.++.|+.+...+..-+++...-..... -.+.++||+||||||||+++++||..++.+++.++++.+
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f 86 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhh
Confidence 3789999999987766442221110000111 125789999999999999999999999999999987633
No 141
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.27 E-value=2.5e-11 Score=130.53 Aligned_cols=191 Identities=14% Similarity=0.199 Sum_probs=114.6
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-----CCceeeccc
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-----GYDLYDLEL 267 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-----~~~i~~l~l 267 (482)
+....+|++.+..+.-.. ....+...... .+. +...++|||++|||||+|+.|||+++ ++.++.+++
T Consensus 281 L~~~~TFDnFvvG~sN~~-A~aaa~avae~------~~~-~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 281 LNPKYTFDTFVIGASNRF-AHAAAVAVAEA------PAK-AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred CCCCCCHhhhcCCCccHH-HHHHHHHHHhC------ccc-cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 334467888875443221 11222222222 222 23458999999999999999999987 466777766
Q ss_pred ccccCh-------HHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHH
Q 011573 268 TAVKDN-------TELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSG 340 (482)
Q Consensus 268 ~~~~~~-------~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 340 (482)
..+... ..+..+........+|+||||+.+. +.. .+...
T Consensus 353 eef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~---gke-------------------------------~tqee 398 (617)
T PRK14086 353 EEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLE---DKE-------------------------------STQEE 398 (617)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhcccc---CCH-------------------------------HHHHH
Confidence 554210 1111222223457899999999863 111 12234
Q ss_pred HHhhhcccccCCCCceEEEEecCCc----CcCCHhhhcCCCe--eeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHH
Q 011573 341 LLNFIDGLWSACGGERLIVFTTNYI----EKLDPALIRKGRM--DKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGEL 414 (482)
Q Consensus 341 LL~~ldg~~s~~~~~~iiI~TTN~~----~~LD~aL~RpGR~--d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l 414 (482)
|++.++.+... + .-||+|+|.+ ..|++.|+. || ...+++..|+.+.|..|++.........+.+++...
T Consensus 399 LF~l~N~l~e~--g-k~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~y 473 (617)
T PRK14086 399 FFHTFNTLHNA--N-KQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEF 473 (617)
T ss_pred HHHHHHHHHhc--C-CCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 55555555432 1 2345566654 357899999 77 567799999999999999988765554554544333
Q ss_pred -hcCCCCCHHHHHHHhc
Q 011573 415 -LGEAKMTPADVAEHLM 430 (482)
Q Consensus 415 -~~~~~~s~adi~~~l~ 430 (482)
+....=+..+|...|.
T Consensus 474 La~r~~rnvR~LegaL~ 490 (617)
T PRK14086 474 IASRISRNIRELEGALI 490 (617)
T ss_pred HHHhccCCHHHHHHHHH
Confidence 3333445566655444
No 142
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.27 E-value=6.7e-11 Score=120.31 Aligned_cols=156 Identities=21% Similarity=0.271 Sum_probs=103.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC-------ceee---
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY-------DLYD--- 264 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~-------~i~~--- 264 (482)
...+|+.|+|.++.|..|+..+.. |.-.|+||.||+|||||+++++++..+.. ++..
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 346899999999999988765543 22358999999999999999999887731 1110
Q ss_pred -------------------------cccccc---cChHH------HHHHHHh-----------cCCCeEEEEeCCccccc
Q 011573 265 -------------------------LELTAV---KDNTE------LRKLLIE-----------TSSKSIIVIEDIDCSLD 299 (482)
Q Consensus 265 -------------------------l~l~~~---~~~~~------L~~l~~~-----------~~~~sIl~iDdiD~~~~ 299 (482)
+.+..+ .+++. +...|.. .....+|++|||+.+-
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~- 157 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD- 157 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC-
Confidence 000000 01111 2222221 1245899999999862
Q ss_pred ccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcc---------cccCCCCceEEEEecCCcC-cCC
Q 011573 300 LTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDG---------LWSACGGERLIVFTTNYIE-KLD 369 (482)
Q Consensus 300 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---------~~s~~~~~~iiI~TTN~~~-~LD 369 (482)
..+.+.||+.|+. .........++|+|.|..+ .|+
T Consensus 158 -----------------------------------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~ 202 (350)
T CHL00081 158 -----------------------------------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELR 202 (350)
T ss_pred -----------------------------------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCC
Confidence 2355667777743 2111223356666777655 699
Q ss_pred HhhhcCCCeeeEEEccCCC-HHHHHHHHHHhcc
Q 011573 370 PALIRKGRMDKHIELSHCS-YEAFKVLAKNYLN 401 (482)
Q Consensus 370 ~aL~RpGR~d~~I~~~~p~-~~~~~~l~~~~l~ 401 (482)
++|+. ||.++|.+++|+ .+.+.+|++....
T Consensus 203 ~~Lld--Rf~l~i~l~~~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 203 PQLLD--RFGMHAEIRTVKDPELRVKIVEQRTS 233 (350)
T ss_pred HHHHH--HhCceeecCCCCChHHHHHHHHhhhc
Confidence 99999 999999999998 5899999987643
No 143
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.27 E-value=1.2e-10 Score=127.46 Aligned_cols=156 Identities=21% Similarity=0.305 Sum_probs=102.9
Q ss_pred cccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----------CCceeeccccc
Q 011573 200 QTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----------GYDLYDLELTA 269 (482)
Q Consensus 200 ~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----------~~~i~~l~l~~ 269 (482)
+.|.+-++..++|...|...+.. -.+...+++|||||||||.+++.+..+| .+.++.++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 45667777777776666555442 1222335699999999999999998876 25567788855
Q ss_pred ccCh-----------------------HHHHHHHHhcC----CCeEEEEeCCcccccccccccccccccccCCCCCCccc
Q 011573 270 VKDN-----------------------TELRKLLIETS----SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQ 322 (482)
Q Consensus 270 ~~~~-----------------------~~L~~l~~~~~----~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~ 322 (482)
+.+. ..+..+|.... ...||+|||||.+.. .
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~k---K------------------- 884 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLIT---K------------------- 884 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCc---c-------------------
Confidence 4221 22344444331 346999999999742 0
Q ss_pred ccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCC---cCcCCHhhhcCCCeee-EEEccCCCHHHHHHHHHH
Q 011573 323 KLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNY---IEKLDPALIRKGRMDK-HIELSHCSYEAFKVLAKN 398 (482)
Q Consensus 323 ~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~---~~~LD~aL~RpGR~d~-~I~~~~p~~~~~~~l~~~ 398 (482)
.+..|-.|++... . .+..++||+++|. ++.|+|.+.. ||.. .|.|++++.+++..|++.
T Consensus 885 -----------~QDVLYnLFR~~~---~-s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~ 947 (1164)
T PTZ00112 885 -----------TQKVLFTLFDWPT---K-INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKE 947 (1164)
T ss_pred -----------HHHHHHHHHHHhh---c-cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHH
Confidence 1223333444322 1 2345788898886 5678898887 6653 488999999999999998
Q ss_pred hccc
Q 011573 399 YLNI 402 (482)
Q Consensus 399 ~l~~ 402 (482)
.+..
T Consensus 948 RAe~ 951 (1164)
T PTZ00112 948 RLEN 951 (1164)
T ss_pred HHHh
Confidence 8753
No 144
>PRK05642 DNA replication initiation factor; Validated
Probab=99.26 E-value=6.1e-11 Score=115.02 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=97.3
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeeccccc
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTA 269 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~ 269 (482)
..+..+|++.+... ....+..+..+.... +-...++++||||+|||||+|++|+|+++ +..++.++...
T Consensus 12 ~~~~~tfdnF~~~~--~~~a~~~~~~~~~~~------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~ 83 (234)
T PRK05642 12 LRDDATFANYYPGA--NAAALGYVERLCEAD------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE 83 (234)
T ss_pred CCCcccccccCcCC--hHHHHHHHHHHhhcc------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence 34457899887332 233334443332211 11113678999999999999999999875 56666666655
Q ss_pred ccChHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccc
Q 011573 270 VKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLW 349 (482)
Q Consensus 270 ~~~~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~ 349 (482)
+... ...++.....--+|+||||+.+. +.. .+...|++.++...
T Consensus 84 ~~~~--~~~~~~~~~~~d~LiiDDi~~~~---~~~-------------------------------~~~~~Lf~l~n~~~ 127 (234)
T PRK05642 84 LLDR--GPELLDNLEQYELVCLDDLDVIA---GKA-------------------------------DWEEALFHLFNRLR 127 (234)
T ss_pred HHhh--hHHHHHhhhhCCEEEEechhhhc---CCh-------------------------------HHHHHHHHHHHHHH
Confidence 5321 12233333344589999999752 111 12234555555543
Q ss_pred cCCCCceEEEEecCCcCc---CCHhhhcCCCe--eeEEEccCCCHHHHHHHHHHh
Q 011573 350 SACGGERLIVFTTNYIEK---LDPALIRKGRM--DKHIELSHCSYEAFKVLAKNY 399 (482)
Q Consensus 350 s~~~~~~iiI~TTN~~~~---LD~aL~RpGR~--d~~I~~~~p~~~~~~~l~~~~ 399 (482)
.. +.++||.++..|.. +.|.|+. |+ ...+.+..|+.+.+..+++..
T Consensus 128 ~~--g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 128 DS--GRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred hc--CCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHH
Confidence 32 23455555545543 3689998 87 467889999999999998854
No 145
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.25 E-value=7.4e-11 Score=121.29 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=49.6
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHh-CCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccc
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARI-GRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELT 268 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~-g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~ 268 (482)
-++|.++.|+.+.-.+....++...-..+ +-..|+++||+||||||||++++++|..++.+++.++.+
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat 81 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 81 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecc
Confidence 36788888888876665433222111111 112358999999999999999999999999999998865
No 146
>PRK06620 hypothetical protein; Validated
Probab=99.24 E-value=1.1e-10 Score=111.67 Aligned_cols=147 Identities=19% Similarity=0.243 Sum_probs=91.0
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCc-CccccccCCCCchHHHHHHHHHHHhCCceeecccccccC
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAW-KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKD 272 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~-~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~ 272 (482)
.++-+|++++..+.-.. ....+..+.. .++..+ .+.++||||||||||+|++++|+..+..++. ....
T Consensus 10 ~~~~tfd~Fvvg~~N~~-a~~~~~~~~~------~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-- 78 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQ-AYNIIKNWQC------GFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-- 78 (214)
T ss_pred CCCCCchhhEecccHHH-HHHHHHHHHH------ccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh--
Confidence 34467898776553322 2333433322 223322 4789999999999999999999998764322 1111
Q ss_pred hHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCC
Q 011573 273 NTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSAC 352 (482)
Q Consensus 273 ~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~ 352 (482)
.. ..+ ....+|+|||||.+ ....+-.++|.+.. .
T Consensus 79 ~~---~~~---~~~d~lliDdi~~~------------------------------------~~~~lf~l~N~~~e---~- 112 (214)
T PRK06620 79 NE---EIL---EKYNAFIIEDIENW------------------------------------QEPALLHIFNIINE---K- 112 (214)
T ss_pred ch---hHH---hcCCEEEEeccccc------------------------------------hHHHHHHHHHHHHh---c-
Confidence 11 111 24478999999953 01233344444432 2
Q ss_pred CCceEEEEecCCcCc--CCHhhhcCCCee--eEEEccCCCHHHHHHHHHHhcc
Q 011573 353 GGERLIVFTTNYIEK--LDPALIRKGRMD--KHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 353 ~~~~iiI~TTN~~~~--LD~aL~RpGR~d--~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
+..++|.++..|.. | |+|+. |+. ..+.+..|+.+.+..+++....
T Consensus 113 -g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 113 -QKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred -CCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 33566666655544 6 88998 885 4689999999999999887754
No 147
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.24 E-value=7.1e-11 Score=113.38 Aligned_cols=169 Identities=22% Similarity=0.316 Sum_probs=98.0
Q ss_pred CCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-----CCceeecccccc
Q 011573 196 PATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-----GYDLYDLELTAV 270 (482)
Q Consensus 196 p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-----~~~i~~l~l~~~ 270 (482)
.-||++.+-.+.-+... ..+......+ |. .-..++||||+|+|||+|.+|+|+++ +..++.++....
T Consensus 4 ~~tFdnfv~g~~N~~a~-~~~~~ia~~~------~~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 4 KYTFDNFVVGESNELAY-AAAKAIAENP------GE-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp T-SCCCS--TTTTHHHH-HHHHHHHHST------TT-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred CCccccCCcCCcHHHHH-HHHHHHHhcC------CC-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 36788886443322222 3333333331 22 22458899999999999999999986 455666655443
Q ss_pred cC-------hHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHh
Q 011573 271 KD-------NTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLN 343 (482)
Q Consensus 271 ~~-------~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 343 (482)
.. ...+..+......--+|+||||+.+. + ...+...|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~---~-------------------------------~~~~q~~lf~ 121 (219)
T PF00308_consen 76 IREFADALRDGEIEEFKDRLRSADLLIIDDIQFLA---G-------------------------------KQRTQEELFH 121 (219)
T ss_dssp HHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGT---T-------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHcccchhhhhhhhcCCEEEEecchhhc---C-------------------------------chHHHHHHHH
Confidence 11 12233344455677899999999863 1 1224455666
Q ss_pred hhcccccCCCCceEEEEecCCcCc---CCHhhhcCCCee--eEEEccCCCHHHHHHHHHHhccccCCCcHHH
Q 011573 344 FIDGLWSACGGERLIVFTTNYIEK---LDPALIRKGRMD--KHIELSHCSYEAFKVLAKNYLNIESHNLFDK 410 (482)
Q Consensus 344 ~ldg~~s~~~~~~iiI~TTN~~~~---LD~aL~RpGR~d--~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~ 410 (482)
.++.+... +..+||.+...|.. ++|.|.. |+. ..+.+..|+.+.+..+++.........+.++
T Consensus 122 l~n~~~~~--~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~ 189 (219)
T PF00308_consen 122 LFNRLIES--GKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEE 189 (219)
T ss_dssp HHHHHHHT--TSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HH
T ss_pred HHHHHHhh--CCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHH
Confidence 66665443 33555555566654 5788888 776 4889999999999999999876544343333
No 148
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.24 E-value=1.8e-10 Score=130.69 Aligned_cols=161 Identities=16% Similarity=0.317 Sum_probs=109.1
Q ss_pred ccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccChHH
Q 011573 199 FQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDNTE 275 (482)
Q Consensus 199 ~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~~~ 275 (482)
+..|+|.+...+.|...+......- ...+ .+...+||+||||||||++|++||+.+ +.+++.++++.......
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl---~~~~-~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGL---SDPN-RPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcc---cCCC-CCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 4567888888887777765432110 0000 111358999999999999999999987 45688888877643333
Q ss_pred HHHHH---------------Hh---cCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHH
Q 011573 276 LRKLL---------------IE---TSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVT 337 (482)
Q Consensus 276 L~~l~---------------~~---~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (482)
...++ .. ....++|+|||||.+ ....
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka------------------------------------~~~v 686 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA------------------------------------HPDV 686 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC------------------------------------CHHH
Confidence 33332 11 123489999999974 1235
Q ss_pred HHHHHhhhcc-ccc-CCC-----CceEEEEecCCc-------------------------CcCCHhhhcCCCeeeEEEcc
Q 011573 338 LSGLLNFIDG-LWS-ACG-----GERLIVFTTNYI-------------------------EKLDPALIRKGRMDKHIELS 385 (482)
Q Consensus 338 ls~LL~~ldg-~~s-~~~-----~~~iiI~TTN~~-------------------------~~LD~aL~RpGR~d~~I~~~ 385 (482)
.+.|++.||. ... ..| .+.+||+|||.. ..+.|+|+. |+|..|.|.
T Consensus 687 ~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~ 764 (857)
T PRK10865 687 FNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFH 764 (857)
T ss_pred HHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecC
Confidence 5667777763 111 111 235899999972 235689998 999999999
Q ss_pred CCCHHHHHHHHHHhcc
Q 011573 386 HCSYEAFKVLAKNYLN 401 (482)
Q Consensus 386 ~p~~~~~~~l~~~~l~ 401 (482)
+++.+....|++.++.
T Consensus 765 PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 765 PLGEQHIASIAQIQLQ 780 (857)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999999875
No 149
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.21 E-value=3.1e-10 Score=115.35 Aligned_cols=152 Identities=22% Similarity=0.310 Sum_probs=101.0
Q ss_pred CccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-------CCcee-------
Q 011573 198 TFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-------GYDLY------- 263 (482)
Q Consensus 198 ~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-------~~~i~------- 263 (482)
+|..++|.+++|..++-.+.. |...++||.||||||||++++++++.+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~-------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID-------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcC-------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 588999999999887554432 123579999999999999999999887 22211
Q ss_pred --e----------------------cccc------cccChHHHHHHHHh-----------cCCCeEEEEeCCcccccccc
Q 011573 264 --D----------------------LELT------AVKDNTELRKLLIE-----------TSSKSIIVIEDIDCSLDLTG 302 (482)
Q Consensus 264 --~----------------------l~l~------~~~~~~~L~~l~~~-----------~~~~sIl~iDdiD~~~~~~~ 302 (482)
. +++. .+...-.+...+.. ...+.+|+||||+.+-
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~---- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE---- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC----
Confidence 0 0111 01111122222211 1245899999999852
Q ss_pred cccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcc---------cccCCCCceEEEEecCCcC-cCCHhh
Q 011573 303 QRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDG---------LWSACGGERLIVFTTNYIE-KLDPAL 372 (482)
Q Consensus 303 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---------~~s~~~~~~iiI~TTN~~~-~LD~aL 372 (482)
..+.+.||+.|+. .........++|+|+|..+ .|+++|
T Consensus 145 --------------------------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~L 192 (337)
T TIGR02030 145 --------------------------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQL 192 (337)
T ss_pred --------------------------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHH
Confidence 2355667777742 2111223357777777655 699999
Q ss_pred hcCCCeeeEEEccCCCH-HHHHHHHHHhc
Q 011573 373 IRKGRMDKHIELSHCSY-EAFKVLAKNYL 400 (482)
Q Consensus 373 ~RpGR~d~~I~~~~p~~-~~~~~l~~~~l 400 (482)
+. ||.+++.+++|.. +++.+|+++..
T Consensus 193 ld--Rf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 193 LD--RFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred Hh--hcceEEECCCCCCHHHHHHHHHhhh
Confidence 99 9999999999976 88889998854
No 150
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=7.5e-11 Score=129.20 Aligned_cols=157 Identities=20% Similarity=0.332 Sum_probs=119.0
Q ss_pred cccccChHHHHHHHHHHHHHhhCHHHHHHhCCC----cCccccccCCCCchHHHHHHHHHHHhC---CceeecccccccC
Q 011573 200 QTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRA----WKRGYLLYGPPGTGKSTMIAAMANLLG---YDLYDLELTAVKD 272 (482)
Q Consensus 200 ~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~----~~rg~LL~GPpGtGKTsl~~aiA~~l~---~~i~~l~l~~~~~ 272 (482)
..|+|.++..+.|.+.|..- +.|+. |-..+||.||.|+|||-||+++|..|. -.++.+|++....
T Consensus 491 ~rViGQd~AV~avs~aIrra--------RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRA--------RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 45788888888877777543 23332 223578899999999999999999996 7899999999977
Q ss_pred hHHHHHHHHhcC------------------CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccch
Q 011573 273 NTELRKLLIETS------------------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNS 334 (482)
Q Consensus 273 ~~~L~~l~~~~~------------------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (482)
...+.+|+...| ..|||+||||+.. .
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA------------------------------------H 606 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA------------------------------------H 606 (786)
T ss_pred HHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc------------------------------------C
Confidence 777777765532 2499999999984 3
Q ss_pred HHHHHHHHhhhcccccCC--C-----CceEEEEecCCc----------------------------CcCCHhhhcCCCee
Q 011573 335 QVTLSGLLNFIDGLWSAC--G-----GERLIVFTTNYI----------------------------EKLDPALIRKGRMD 379 (482)
Q Consensus 335 ~~~ls~LL~~ldg~~s~~--~-----~~~iiI~TTN~~----------------------------~~LD~aL~RpGR~d 379 (482)
...++-||+.+|.-.-.. | .+.|||||||-- ....|+|+. |+|
T Consensus 607 pdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid 684 (786)
T COG0542 607 PDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RID 684 (786)
T ss_pred HHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcc
Confidence 457888999998422222 2 246899999831 113578888 999
Q ss_pred eEEEccCCCHHHHHHHHHHhccc
Q 011573 380 KHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 380 ~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
-.|.|.+.+.+...+|+...|..
T Consensus 685 ~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 685 EIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred cEEeccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998763
No 151
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.20 E-value=3.2e-10 Score=128.92 Aligned_cols=160 Identities=15% Similarity=0.304 Sum_probs=109.0
Q ss_pred cccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccChHHH
Q 011573 200 QTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDNTEL 276 (482)
Q Consensus 200 ~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~~~L 276 (482)
..|+|.+...+.|...+......- .. ...+...+||+||||||||++|++||..+ +.+++.++++.......+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl---~~-~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGL---SD-PNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccC---CC-CCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 457888888888877766532110 00 00123458999999999999999999987 467888888776433222
Q ss_pred HHHH---------------H---hcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHH
Q 011573 277 RKLL---------------I---ETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTL 338 (482)
Q Consensus 277 ~~l~---------------~---~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 338 (482)
..++ . .....+||+|||||.+ .....
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka------------------------------------~~~v~ 684 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA------------------------------------HPDVF 684 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC------------------------------------CHHHH
Confidence 2221 1 1134589999999985 23356
Q ss_pred HHHHhhhcc-c-ccCCC-----CceEEEEecCCcC-------------------------cCCHhhhcCCCeeeEEEccC
Q 011573 339 SGLLNFIDG-L-WSACG-----GERLIVFTTNYIE-------------------------KLDPALIRKGRMDKHIELSH 386 (482)
Q Consensus 339 s~LL~~ldg-~-~s~~~-----~~~iiI~TTN~~~-------------------------~LD~aL~RpGR~d~~I~~~~ 386 (482)
+.||+.+|. . ....| .+.|||+|||... .+.|.|+. |+|..|.|.+
T Consensus 685 ~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~P 762 (852)
T TIGR03346 685 NVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHP 762 (852)
T ss_pred HHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCC
Confidence 678888753 2 11111 3468999999721 14577777 9999999999
Q ss_pred CCHHHHHHHHHHhcc
Q 011573 387 CSYEAFKVLAKNYLN 401 (482)
Q Consensus 387 p~~~~~~~l~~~~l~ 401 (482)
++.+....|+...+.
T Consensus 763 L~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 763 LGREQIARIVEIQLG 777 (852)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998875
No 152
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.19 E-value=1.8e-11 Score=112.90 Aligned_cols=107 Identities=22% Similarity=0.423 Sum_probs=75.2
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCC----ceeecccccccC----hHHHHHHHHhcC------CCeEEEEeCCccccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGY----DLYDLELTAVKD----NTELRKLLIETS------SKSIIVIEDIDCSLD 299 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~----~i~~l~l~~~~~----~~~L~~l~~~~~------~~sIl~iDdiD~~~~ 299 (482)
.-.+||.||+|||||.+++++|..+.. +++.++++.... ...+..++...+ ...||+|||||.+..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 456899999999999999999999996 999999999877 455566665543 346999999999642
Q ss_pred ccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhccccc--CCC-----CceEEEEecCCc
Q 011573 300 LTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWS--ACG-----GERLIVFTTNYI 365 (482)
Q Consensus 300 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s--~~~-----~~~iiI~TTN~~ 365 (482)
+. ..+.+.......+.||..||+-.- ..+ .+.|+|||+|--
T Consensus 83 ----~~---------------------~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 83 ----SN---------------------SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp ----TT---------------------TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ----cc---------------------cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 10 011112234567888888874321 111 357999999964
No 153
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.19 E-value=1.6e-10 Score=130.73 Aligned_cols=156 Identities=18% Similarity=0.308 Sum_probs=107.6
Q ss_pred cccccChHHHHHHHHHHHHHhhCHHHHHHhCC-CcCcc-ccccCCCCchHHHHHHHHHHHh---CCceeecccccccChH
Q 011573 200 QTLAMEPAEKKEIIDDLIAFSKSEDFYARIGR-AWKRG-YLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDNT 274 (482)
Q Consensus 200 ~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~-~~~rg-~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~~ 274 (482)
..|+|.++..+.|.+.+.....+ +.. ..|.| +||+||||||||.+|+++|..+ .-.++.++++......
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~g------l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAG------LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcC------CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhh
Confidence 46778888888887777553211 111 12344 7999999999999999999998 4567888877653222
Q ss_pred H-------------------HHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchH
Q 011573 275 E-------------------LRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQ 335 (482)
Q Consensus 275 ~-------------------L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (482)
. |...+.. ...+||+|||||.+ ..
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~~-~p~svvllDEieka------------------------------------~~ 682 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVRR-KPYSVVLLDEVEKA------------------------------------HP 682 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHHh-CCCcEEEEechhhc------------------------------------CH
Confidence 2 2333332 45699999999974 12
Q ss_pred HHHHHHHhhhcccc--cCCC-----CceEEEEecCCc-----------------------------CcCCHhhhcCCCee
Q 011573 336 VTLSGLLNFIDGLW--SACG-----GERLIVFTTNYI-----------------------------EKLDPALIRKGRMD 379 (482)
Q Consensus 336 ~~ls~LL~~ldg~~--s~~~-----~~~iiI~TTN~~-----------------------------~~LD~aL~RpGR~d 379 (482)
..+..|+..+|.-. ...| .+.+||+|||-. ..+.|+|+. |++
T Consensus 683 ~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~ 760 (852)
T TIGR03345 683 DVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT 760 (852)
T ss_pred HHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee
Confidence 34566777776321 1111 347999999941 115688888 998
Q ss_pred eEEEccCCCHHHHHHHHHHhcc
Q 011573 380 KHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 380 ~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
.|.|...+.++..+|+...+.
T Consensus 761 -iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 761 -VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred -EEEeCCCCHHHHHHHHHHHHH
Confidence 889999999999999998875
No 154
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.18 E-value=4.1e-10 Score=120.35 Aligned_cols=174 Identities=20% Similarity=0.260 Sum_probs=118.0
Q ss_pred eeccCCCCccccccChHHHHHHHHHHHHHhh---C---HHH-----------HH----HhCCCcCccccccCCCCchHHH
Q 011573 191 VVFEHPATFQTLAMEPAEKKEIIDDLIAFSK---S---EDF-----------YA----RIGRAWKRGYLLYGPPGTGKST 249 (482)
Q Consensus 191 ~~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~---~---~~~-----------y~----~~g~~~~rg~LL~GPpGtGKTs 249 (482)
|..-.|..|.+|.+++.+-+.++..++.+-- . .++ +. ..+.|.++-+||+||||-||||
T Consensus 262 Vdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTT 341 (877)
T KOG1969|consen 262 VDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTT 341 (877)
T ss_pred ecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhH
Confidence 4667899999999999999999988876421 0 011 10 1356777889999999999999
Q ss_pred HHHHHHHHhCCceeecccccccChHHHHHHHHhc----------CCCeEEEEeCCcccccccccccccccccccCCCCCC
Q 011573 250 MIAAMANLLGYDLYDLELTAVKDNTELRKLLIET----------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKD 319 (482)
Q Consensus 250 l~~aiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~----------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~ 319 (482)
||+.||.+.||.++.++.++-.+...++.-+..+ .+|..|||||||-..
T Consensus 342 LAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~--------------------- 400 (877)
T KOG1969|consen 342 LAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP--------------------- 400 (877)
T ss_pred HHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc---------------------
Confidence 9999999999999999999988776666554432 478999999999742
Q ss_pred cccccccccccccchHHHHHHHHhhhc-------ccccC----------CCCceEEEEecCCcCcCCHhhhcCCCeeeEE
Q 011573 320 PRQKLGKEERETNNSQVTLSGLLNFID-------GLWSA----------CGGERLIVFTTNYIEKLDPALIRKGRMDKHI 382 (482)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~ls~LL~~ld-------g~~s~----------~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I 382 (482)
...+..+|..+. |-... ..--|-||+.+|..-. |||+----+-..|
T Consensus 401 ---------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii 463 (877)
T KOG1969|consen 401 ---------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEII 463 (877)
T ss_pred ---------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEE
Confidence 011111111111 10000 0001568999998655 8887322577789
Q ss_pred EccCCCHHHHHHHHHHhccc
Q 011573 383 ELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 383 ~~~~p~~~~~~~l~~~~l~~ 402 (482)
.|..|...-..+-++.....
T Consensus 464 ~f~~p~~s~Lv~RL~~IC~r 483 (877)
T KOG1969|consen 464 AFVPPSQSRLVERLNEICHR 483 (877)
T ss_pred EecCCChhHHHHHHHHHHhh
Confidence 99999877655555444433
No 155
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=1e-09 Score=111.43 Aligned_cols=125 Identities=21% Similarity=0.310 Sum_probs=94.1
Q ss_pred cCccccccCCCCchHHHHHHHHHHHhCC------------------------ceeeccccc---ccChHHHHHHHHhcC-
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLLGY------------------------DLYDLELTA---VKDNTELRKLLIETS- 284 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l~~------------------------~i~~l~l~~---~~~~~~L~~l~~~~~- 284 (482)
.+.+|||+||+|+||+++|.++|..+.+ +++.+.... ...-+.++++.....
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 3568999999999999999999998854 333332211 123456666655432
Q ss_pred -----CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEE
Q 011573 285 -----SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIV 359 (482)
Q Consensus 285 -----~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI 359 (482)
..-|++||++|.+ +....+.||..|+.- +++.++|
T Consensus 101 ~~~~~~~kv~iI~~a~~m------------------------------------~~~aaNaLLK~LEEP----p~~~~fi 140 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAM------------------------------------NRNAANALLKSLEEP----SGDTVLL 140 (328)
T ss_pred ccccCCCeEEEECChhhC------------------------------------CHHHHHHHHHHHhCC----CCCeEEE
Confidence 3568899999986 234567799998874 3568999
Q ss_pred EecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhc
Q 011573 360 FTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYL 400 (482)
Q Consensus 360 ~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l 400 (482)
++|++++.|.|.++. |+. .+.|+.|+.++....+....
T Consensus 141 L~t~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 141 LISHQPSRLLPTIKS--RCQ-QQACPLPSNEESLQWLQQAL 178 (328)
T ss_pred EEECChhhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHhc
Confidence 999999999999999 996 69999999988877776543
No 156
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.18 E-value=3.2e-10 Score=117.93 Aligned_cols=46 Identities=30% Similarity=0.526 Sum_probs=35.1
Q ss_pred ccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhC
Q 011573 199 FQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 199 ~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
++++.++++..+.++..+. -++.++|+||||||||++|+++|..+.
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 5566666666665544433 157899999999999999999999885
No 157
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.16 E-value=3.2e-10 Score=119.92 Aligned_cols=188 Identities=14% Similarity=0.251 Sum_probs=113.3
Q ss_pred CCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-----CCceeecccccc
Q 011573 196 PATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-----GYDLYDLELTAV 270 (482)
Q Consensus 196 p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-----~~~i~~l~l~~~ 270 (482)
+.+|++.+..+.-. .....+..+... .|.. ..+++||||+|||||+|++|+++++ +..++.++...+
T Consensus 111 ~~tFdnFv~g~~n~-~A~~aa~~~a~~------~~~~-~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSNE-QAFIAVQTVSKN------PGIS-YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcHH-HHHHHHHHHHhC------cCcc-cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 46788876544322 223344444332 2322 2579999999999999999999976 356666665543
Q ss_pred cCh---------HHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHH
Q 011573 271 KDN---------TELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGL 341 (482)
Q Consensus 271 ~~~---------~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 341 (482)
... ..+..+.......-+|+||||+.+. +. ..+...|
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~---~k-------------------------------~~~~e~l 228 (450)
T PRK14087 183 ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLS---YK-------------------------------EKTNEIF 228 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccCCEEEEecccccc---CC-------------------------------HHHHHHH
Confidence 110 1233333334567799999999752 11 1123344
Q ss_pred HhhhcccccCCCCceEEEEecCC-cC---cCCHhhhcCCCee--eEEEccCCCHHHHHHHHHHhccccCC--CcHHH-HH
Q 011573 342 LNFIDGLWSACGGERLIVFTTNY-IE---KLDPALIRKGRMD--KHIELSHCSYEAFKVLAKNYLNIESH--NLFDK-IG 412 (482)
Q Consensus 342 L~~ldg~~s~~~~~~iiI~TTN~-~~---~LD~aL~RpGR~d--~~I~~~~p~~~~~~~l~~~~l~~~~~--~~~~~-i~ 412 (482)
...++.+... + ..+|+|+|. |+ .|++.|.. ||. ..+.+..|+.+++.++++..+..... .+.++ +.
T Consensus 229 f~l~N~~~~~--~-k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~ 303 (450)
T PRK14087 229 FTIFNNFIEN--D-KQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAIN 303 (450)
T ss_pred HHHHHHHHHc--C-CcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHH
Confidence 4444444322 1 245666654 33 46889998 874 77889999999999999998764321 23333 34
Q ss_pred HHhcCCCCCHHHHHHHhc
Q 011573 413 ELLGEAKMTPADVAEHLM 430 (482)
Q Consensus 413 ~l~~~~~~s~adi~~~l~ 430 (482)
-++...+=++..+.+.|.
T Consensus 304 ~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 304 FISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHccCCCHHHHHHHHH
Confidence 444445556666665553
No 158
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.15 E-value=3e-10 Score=128.82 Aligned_cols=155 Identities=17% Similarity=0.306 Sum_probs=105.5
Q ss_pred cccccChHHHHHHHHHHHHHhhCHHHHHHhCCC----cCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccC
Q 011573 200 QTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRA----WKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKD 272 (482)
Q Consensus 200 ~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~----~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~ 272 (482)
..|+|.++..+.|...+... +.|.. |...+||+||||||||++|+++|..+ +.+++.++++....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 45678777777776655432 12221 12348999999999999999999987 46778887776532
Q ss_pred hHH-------------------HHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccc
Q 011573 273 NTE-------------------LRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNN 333 (482)
Q Consensus 273 ~~~-------------------L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (482)
... |...+.. ...+||+|||||.+
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~~-~p~~VvllDeieka------------------------------------ 623 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVRK-KPYTVVLFDEIEKA------------------------------------ 623 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHHh-CCCeEEEECChhhC------------------------------------
Confidence 222 2222222 23489999999985
Q ss_pred hHHHHHHHHhhhcc-cc-cCC-----CCceEEEEecCCcCc-------------------------------------CC
Q 011573 334 SQVTLSGLLNFIDG-LW-SAC-----GGERLIVFTTNYIEK-------------------------------------LD 369 (482)
Q Consensus 334 ~~~~ls~LL~~ldg-~~-s~~-----~~~~iiI~TTN~~~~-------------------------------------LD 369 (482)
.....+.||..+|. .. ... -.+.|+|+|||.... +.
T Consensus 624 ~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 703 (821)
T CHL00095 624 HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFR 703 (821)
T ss_pred CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcC
Confidence 12356678888874 21 111 135799999984311 23
Q ss_pred HhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 370 PALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 370 ~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
|.|+. |+|..|.|.+.+.++..+|+...+.
T Consensus 704 pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~ 733 (821)
T CHL00095 704 PEFLN--RLDEIIVFRQLTKNDVWEIAEIMLK 733 (821)
T ss_pred HHHhc--cCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 66777 9999999999999999999998875
No 159
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.13 E-value=5.3e-11 Score=103.11 Aligned_cols=106 Identities=25% Similarity=0.332 Sum_probs=62.3
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHHHH--HHh-------cC---CCeEEEEeCCccccccccc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKL--LIE-------TS---SKSIIVIEDIDCSLDLTGQ 303 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~~l--~~~-------~~---~~sIl~iDdiD~~~~~~~~ 303 (482)
.+||+|+||+|||++|+++|..++..+..+.++.-...+.+.-. +.. .+ -..|+++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------ 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------ 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC------
Confidence 37999999999999999999999999998887642222222111 000 01 2369999999984
Q ss_pred ccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc-------ccccCCCCceEEEEecCCcC-----cCCHh
Q 011573 304 RRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID-------GLWSACGGERLIVFTTNYIE-----KLDPA 371 (482)
Q Consensus 304 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld-------g~~s~~~~~~iiI~TTN~~~-----~LD~a 371 (482)
...+.|.||..|. |.....+...+||+|-|..+ .|+.|
T Consensus 75 ------------------------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea 124 (131)
T PF07726_consen 75 ------------------------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEA 124 (131)
T ss_dssp -------------------------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HH
T ss_pred ------------------------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHH
Confidence 3457888998874 32333445678899999887 69999
Q ss_pred hhcCCCee
Q 011573 372 LIRKGRMD 379 (482)
Q Consensus 372 L~RpGR~d 379 (482)
++. ||-
T Consensus 125 ~~D--RF~ 130 (131)
T PF07726_consen 125 QLD--RFM 130 (131)
T ss_dssp HHT--TSS
T ss_pred Hhc--ccc
Confidence 999 883
No 160
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.13 E-value=1.3e-10 Score=113.09 Aligned_cols=98 Identities=20% Similarity=0.372 Sum_probs=70.2
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeeccccc
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTA 269 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~ 269 (482)
..++.+|++.....+..+.++..+..|.... .. ...+++|+||||||||+|+.|||+++ +..++.+++..
T Consensus 65 ~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~---~~----~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~ 137 (244)
T PRK07952 65 LHQNCSFENYRVECEGQMNALSKARQYVEEF---DG----NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVAD 137 (244)
T ss_pred cccCCccccccCCCchHHHHHHHHHHHHHhh---cc----CCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHH
Confidence 3356789998876655556667777776431 11 13589999999999999999999998 66777776655
Q ss_pred cc---------ChHHHHHHHHhcCCCeEEEEeCCccc
Q 011573 270 VK---------DNTELRKLLIETSSKSIIVIEDIDCS 297 (482)
Q Consensus 270 ~~---------~~~~L~~l~~~~~~~sIl~iDdiD~~ 297 (482)
+. .+.....++.......+|+|||+++.
T Consensus 138 l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~ 174 (244)
T PRK07952 138 IMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQ 174 (244)
T ss_pred HHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCC
Confidence 42 11223455666677889999999983
No 161
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.11 E-value=1.4e-09 Score=110.30 Aligned_cols=64 Identities=17% Similarity=0.274 Sum_probs=50.5
Q ss_pred CCcc-ccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC-------ceeeccc
Q 011573 197 ATFQ-TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY-------DLYDLEL 267 (482)
Q Consensus 197 ~~~~-~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~-------~i~~l~l 267 (482)
.-|+ ++.|.++.++++++.+..... .. ...++.++|+|||||||||++++||+.++. ++|.+..
T Consensus 47 ~~F~~~~~G~~~~i~~lv~~l~~~a~------g~-~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 47 RFFDHDFFGMEEAIERFVNYFKSAAQ------GL-EERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cccchhccCcHHHHHHHHHHHHHHHh------cC-CCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 3467 899999998888876655432 11 234678899999999999999999999976 8888866
No 162
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=8.2e-10 Score=112.49 Aligned_cols=146 Identities=21% Similarity=0.283 Sum_probs=102.8
Q ss_pred Ccccccc-ChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc---------------
Q 011573 198 TFQTLAM-EPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD--------------- 261 (482)
Q Consensus 198 ~~~~l~~-~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~--------------- 261 (482)
.|++|.| .+.+++.+...+. . | ..+..||||||+|+||+++|+++|+.+...
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~----~-------~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA----K-------N-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH----c-------C-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 3667777 6666666544332 1 1 245789999999999999999999987431
Q ss_pred ---------eeecccccc-cChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCcccccc
Q 011573 262 ---------LYDLELTAV-KDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLG 325 (482)
Q Consensus 262 ---------i~~l~l~~~-~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 325 (482)
+..+....- ..-+.++.+....+ ..-|++||++|.+
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~---------------------------- 122 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM---------------------------- 122 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh----------------------------
Confidence 222221111 12345666654432 4569999999985
Q ss_pred cccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHH
Q 011573 326 KEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKN 398 (482)
Q Consensus 326 ~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~ 398 (482)
+....+.||..|+.. ++..++|++|+.+++|.|+++. |+. .++|..|+.++....++.
T Consensus 123 --------~~~a~NaLLK~LEEP----p~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 123 --------TASAANSLLKFLEEP----SGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred --------CHHHHHHHHHHhcCC----CCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 223556799999874 3557888999999999999999 885 999999999988777654
No 163
>PRK08116 hypothetical protein; Validated
Probab=99.10 E-value=5.6e-10 Score=110.37 Aligned_cols=148 Identities=18% Similarity=0.299 Sum_probs=90.2
Q ss_pred CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccC-
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKD- 272 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~- 272 (482)
.+|++....+... .....+..|.++- .... ...+|++||||||||||+|+.|||+++ +.+++.++...+..
T Consensus 82 ~tFdnf~~~~~~~-~a~~~a~~y~~~~---~~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 82 STFENFLFDKGSE-KAYKIARKYVKKF---EEMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred cchhcccCChHHH-HHHHHHHHHHHHH---Hhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 4677776554443 3445555555432 1111 234689999999999999999999987 67777776654311
Q ss_pred ---------hHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHh
Q 011573 273 ---------NTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLN 343 (482)
Q Consensus 273 ---------~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 343 (482)
......++.......+|+|||+...- ........|.+
T Consensus 157 i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~----------------------------------~t~~~~~~l~~ 202 (268)
T PRK08116 157 IKSTYKSSGKEDENEIIRSLVNADLLILDDLGAER----------------------------------DTEWAREKVYN 202 (268)
T ss_pred HHHHHhccccccHHHHHHHhcCCCEEEEecccCCC----------------------------------CCHHHHHHHHH
Confidence 01122344445566799999986510 01233455777
Q ss_pred hhcccccCCCCceEEEEecCCc-C----cCCHhhhcCCCe---eeEEEccCCC
Q 011573 344 FIDGLWSACGGERLIVFTTNYI-E----KLDPALIRKGRM---DKHIELSHCS 388 (482)
Q Consensus 344 ~ldg~~s~~~~~~iiI~TTN~~-~----~LD~aL~RpGR~---d~~I~~~~p~ 388 (482)
.||.... .+..+|+|||.+ + .+++.+.. |+ -..|.|.-++
T Consensus 203 iin~r~~---~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d 250 (268)
T PRK08116 203 IIDSRYR---KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKS 250 (268)
T ss_pred HHHHHHH---CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcC
Confidence 7776533 224688888865 2 25777776 63 3346666555
No 164
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=2.5e-09 Score=108.05 Aligned_cols=173 Identities=20% Similarity=0.247 Sum_probs=115.3
Q ss_pred CccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc----------------
Q 011573 198 TFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD---------------- 261 (482)
Q Consensus 198 ~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~---------------- 261 (482)
.|++|+|.+.+++.+...+.. | ..+..|||+||+|+||+++|.++|+.+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------N-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 488999999998888665532 1 224699999999999999999999987322
Q ss_pred --eeecccccc-----------------------cChHHHHHHHHhc------CCCeEEEEeCCcccccccccccccccc
Q 011573 262 --LYDLELTAV-----------------------KDNTELRKLLIET------SSKSIIVIEDIDCSLDLTGQRRKKKEK 310 (482)
Q Consensus 262 --i~~l~l~~~-----------------------~~~~~L~~l~~~~------~~~sIl~iDdiD~~~~~~~~r~~~~~~ 310 (482)
++.+..... -.-+.++++.... ...-|++||++|.+
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m------------- 136 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM------------- 136 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-------------
Confidence 122211100 0112445553332 24679999999985
Q ss_pred cccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHH
Q 011573 311 KEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYE 390 (482)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~ 390 (482)
+....+.||..|+.. + ..++|++|+.++.|-|.++. |+. .|.|+.++.+
T Consensus 137 -----------------------~~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~ 185 (314)
T PRK07399 137 -----------------------NEAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDE 185 (314)
T ss_pred -----------------------CHHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHh--hce-EEecCCCCHH
Confidence 223456799998875 2 34788888999999999999 995 9999999999
Q ss_pred HHHHHHHHhccccCCCcHHHHHHHhcCCCCCHHHHHHH
Q 011573 391 AFKVLAKNYLNIESHNLFDKIGELLGEAKMTPADVAEH 428 (482)
Q Consensus 391 ~~~~l~~~~l~~~~~~~~~~i~~l~~~~~~s~adi~~~ 428 (482)
+..+++......+.. ..+...++...+=+|....+.
T Consensus 186 ~~~~~L~~~~~~~~~--~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 186 QLEQVLKRLGDEEIL--NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred HHHHHHHHhhccccc--hhHHHHHHHHcCCCHHHHHHH
Confidence 998888876432211 111233444444555555443
No 165
>PRK09087 hypothetical protein; Validated
Probab=99.08 E-value=1.4e-09 Score=104.95 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=78.1
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDE 314 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~ 314 (482)
+.++||||+|||||+|++++|...+..++... .+. ..-+ .... ..+|+|||+|.+- .
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~--~~~-~~~~----~~~~-~~~l~iDDi~~~~---~------------ 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPN--EIG-SDAA----NAAA-EGPVLIEDIDAGG---F------------ 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHH--Hcc-hHHH----Hhhh-cCeEEEECCCCCC---C------------
Confidence 34899999999999999999998776655432 221 1111 1111 2588899999741 0
Q ss_pred CCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCc---CCHhhhcCCCee--eEEEccCCCH
Q 011573 315 GNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEK---LDPALIRKGRMD--KHIELSHCSY 389 (482)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~---LD~aL~RpGR~d--~~I~~~~p~~ 389 (482)
.. .+|++.++.+... +..+||.++..|.. ..|+|+. |+. ..+++..|+.
T Consensus 102 -------------------~~---~~lf~l~n~~~~~--g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~ 155 (226)
T PRK09087 102 -------------------DE---TGLFHLINSVRQA--GTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDD 155 (226)
T ss_pred -------------------CH---HHHHHHHHHHHhC--CCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCH
Confidence 01 2255555544332 22445544444432 3688988 885 7899999999
Q ss_pred HHHHHHHHHhcccc
Q 011573 390 EAFKVLAKNYLNIE 403 (482)
Q Consensus 390 ~~~~~l~~~~l~~~ 403 (482)
+.+..+++..+...
T Consensus 156 e~~~~iL~~~~~~~ 169 (226)
T PRK09087 156 ALLSQVIFKLFADR 169 (226)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999887543
No 166
>PRK08181 transposase; Validated
Probab=99.07 E-value=6.1e-10 Score=109.84 Aligned_cols=64 Identities=25% Similarity=0.481 Sum_probs=48.1
Q ss_pred CccccccCCCCchHHHHHHHHHHHh---CCceeeccccccc-------ChHHHHHHHHhcCCCeEEEEeCCccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVK-------DNTELRKLLIETSSKSIIVIEDIDCS 297 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~-------~~~~L~~l~~~~~~~sIl~iDdiD~~ 297 (482)
..+++|+||||||||+|+.|+|+++ |+.++.++...+. .+..+.+.+.......+|+|||++..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~ 179 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYV 179 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccc
Confidence 4689999999999999999999866 6677666655441 11234455666677889999999874
No 167
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=5.4e-10 Score=122.57 Aligned_cols=154 Identities=25% Similarity=0.340 Sum_probs=107.8
Q ss_pred CccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----------CCceeeccc
Q 011573 198 TFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----------GYDLYDLEL 267 (482)
Q Consensus 198 ~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----------~~~i~~l~l 267 (482)
.+|.|+|-++..+++++.+.+.. +..-+|.|+||+|||.++..+|... +..++.+++
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~-------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRT-------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccC-------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 47889999988888888876544 4578899999999999999999875 677899999
Q ss_pred cccc--------ChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHH
Q 011573 268 TAVK--------DNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVT 337 (482)
Q Consensus 268 ~~~~--------~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (482)
+++. -+..|+.++.+.. .+.|||||||+.+....+.. +. ...
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~---------------------------G~-a~D 286 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATE---------------------------GG-AMD 286 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccc---------------------------cc-ccc
Confidence 8872 2567888877653 48999999999986311110 00 111
Q ss_pred HHHHHhhhcccccCCCCceEEEEecC-----CcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhc
Q 011573 338 LSGLLNFIDGLWSACGGERLIVFTTN-----YIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYL 400 (482)
Q Consensus 338 ls~LL~~ldg~~s~~~~~~iiI~TTN-----~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l 400 (482)
.+.+|.-.= +.|+=++|-+||- +.++ |+||-| ||. .|.+..|+.++-..|++..-
T Consensus 287 AaNiLKPaL----ARGeL~~IGATT~~EYRk~iEK-D~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 287 AANLLKPAL----ARGELRCIGATTLDEYRKYIEK-DAALER--RFQ-KVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hhhhhHHHH----hcCCeEEEEeccHHHHHHHhhh-chHHHh--cCc-eeeCCCCCHHHHHHHHHHHH
Confidence 222232111 1233344444552 3333 999999 996 99999999998888887653
No 168
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4.9e-09 Score=107.88 Aligned_cols=152 Identities=18% Similarity=0.271 Sum_probs=107.2
Q ss_pred cccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc-----eeecccccccChHH-
Q 011573 202 LAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD-----LYDLELTAVKDNTE- 275 (482)
Q Consensus 202 l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~-----i~~l~l~~~~~~~~- 275 (482)
+..-++..+++...+..++++. .|..+++|||||||||.+++-++.++.-+ ++.+||....+...
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~---------~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGE---------RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCC---------CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 6777888888887777766652 24459999999999999999999998443 78888887754332
Q ss_pred HHHHHH------------------------hcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccc
Q 011573 276 LRKLLI------------------------ETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERET 331 (482)
Q Consensus 276 L~~l~~------------------------~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (482)
+..++. ......||++||+|.+++.
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~------------------------------- 138 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDK------------------------------- 138 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccc-------------------------------
Confidence 222222 2235689999999998630
Q ss_pred cchHHHHHHHHhhhcccccCCCCceEEEEecCCc---CcCCHhhhcCCCe-eeEEEccCCCHHHHHHHHHHhcc
Q 011573 332 NNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYI---EKLDPALIRKGRM-DKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 332 ~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~---~~LD~aL~RpGR~-d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
....+-.|+..-+.. ...+++|+.+|.. +.|||-+.. ++ ..+|.|++.+.++...|++....
T Consensus 139 --~~~~LY~L~r~~~~~----~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 139 --DGEVLYSLLRAPGEN----KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred --cchHHHHHHhhcccc----ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 013455555544433 2347788888876 578888886 33 24689999999999999988764
No 169
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.05 E-value=1.2e-09 Score=114.46 Aligned_cols=128 Identities=20% Similarity=0.240 Sum_probs=82.1
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCC--ceeecccc-----cccChHHHHHH-----HHh-----cCCCeEEEEeCCcc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGY--DLYDLELT-----AVKDNTELRKL-----LIE-----TSSKSIIVIEDIDC 296 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~--~i~~l~l~-----~~~~~~~L~~l-----~~~-----~~~~sIl~iDdiD~ 296 (482)
...+||+||||||||++|+++|..++. ++..+.+. ++-....+..+ |.. .+...+||+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 468999999999999999999998753 33322222 11010111111 111 11234899999986
Q ss_pred cccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc-ccccCCC-----CceEEEEecCCcCc---
Q 011573 297 SLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID-GLWSACG-----GERLIVFTTNYIEK--- 367 (482)
Q Consensus 297 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld-g~~s~~~-----~~~iiI~TTN~~~~--- 367 (482)
+ +..+.+.||..|. +.....+ ..+++++|||....
T Consensus 119 a------------------------------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~ 162 (498)
T PRK13531 119 A------------------------------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADS 162 (498)
T ss_pred C------------------------------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCC
Confidence 4 3457788999983 3322211 23678888884322
Q ss_pred CCHhhhcCCCeeeEEEccCCC-HHHHHHHHHHh
Q 011573 368 LDPALIRKGRMDKHIELSHCS-YEAFKVLAKNY 399 (482)
Q Consensus 368 LD~aL~RpGR~d~~I~~~~p~-~~~~~~l~~~~ 399 (482)
..+|+.. ||-++|.+|||+ .+.++.|+...
T Consensus 163 ~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 163 SLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred chHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 3359999 999999999997 56778888764
No 170
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.04 E-value=2.6e-09 Score=107.97 Aligned_cols=117 Identities=24% Similarity=0.332 Sum_probs=87.3
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC------------------------CceeecccccccC----hHHHHHHHHhcC--
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG------------------------YDLYDLELTAVKD----NTELRKLLIETS-- 284 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~------------------------~~i~~l~l~~~~~----~~~L~~l~~~~~-- 284 (482)
..+||+||||||||++|.++|+++. .+++.++.+.... .+.++.+.....
T Consensus 25 halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~ 104 (325)
T COG0470 25 HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSES 104 (325)
T ss_pred ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccC
Confidence 3799999999999999999999987 5777777776654 344555554432
Q ss_pred ----CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEE
Q 011573 285 ----SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVF 360 (482)
Q Consensus 285 ----~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~ 360 (482)
..-|++|||+|.+- ....+.|+..+..- +....+|+
T Consensus 105 ~~~~~~kviiidead~mt------------------------------------~~A~nallk~lEep----~~~~~~il 144 (325)
T COG0470 105 PLEGGYKVVIIDEADKLT------------------------------------EDAANALLKTLEEP----PKNTRFIL 144 (325)
T ss_pred CCCCCceEEEeCcHHHHh------------------------------------HHHHHHHHHHhccC----CCCeEEEE
Confidence 45799999999862 12345567666653 35578999
Q ss_pred ecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHH
Q 011573 361 TTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKV 394 (482)
Q Consensus 361 TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~ 394 (482)
+||.+..+-|.+.. |+. .+.|+.|+...+..
T Consensus 145 ~~n~~~~il~tI~S--Rc~-~i~f~~~~~~~~i~ 175 (325)
T COG0470 145 ITNDPSKILPTIRS--RCQ-RIRFKPPSRLEAIA 175 (325)
T ss_pred EcCChhhccchhhh--cce-eeecCCchHHHHHH
Confidence 99999999999988 885 88998865544433
No 171
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.04 E-value=5.6e-10 Score=123.00 Aligned_cols=152 Identities=21% Similarity=0.280 Sum_probs=101.4
Q ss_pred CccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-------------------
Q 011573 198 TFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL------------------- 258 (482)
Q Consensus 198 ~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l------------------- 258 (482)
+|..|+|.+.+|..+.-.+.. +--.||||+||||||||+++++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~-------------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVD-------------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhC-------------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 578999999888776433321 112479999999999999999999988
Q ss_pred ----------------CCceeeccccccc----ChHHHHHHHHh-----------cCCCeEEEEeCCccccccccccccc
Q 011573 259 ----------------GYDLYDLELTAVK----DNTELRKLLIE-----------TSSKSIIVIEDIDCSLDLTGQRRKK 307 (482)
Q Consensus 259 ----------------~~~i~~l~l~~~~----~~~~L~~l~~~-----------~~~~sIl~iDdiD~~~~~~~~r~~~ 307 (482)
..+++.+.++... ....+...+.. .....|||||||+.+-
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~--------- 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD--------- 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC---------
Confidence 2455555444221 11122332221 1245799999999862
Q ss_pred ccccccCCCCCCcccccccccccccchHHHHHHHHhhhc-cc--------ccCCCCceEEEEecCCcC-cCCHhhhcCCC
Q 011573 308 KEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID-GL--------WSACGGERLIVFTTNYIE-KLDPALIRKGR 377 (482)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld-g~--------~s~~~~~~iiI~TTN~~~-~LD~aL~RpGR 377 (482)
..+.+.||+.|+ |. ........++|+|+|..+ .|.++|+. |
T Consensus 140 ---------------------------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R 190 (633)
T TIGR02442 140 ---------------------------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--R 190 (633)
T ss_pred ---------------------------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--h
Confidence 335666888775 21 111112367888988643 68999999 9
Q ss_pred eeeEEEccCCC-HHHHHHHHHHhc
Q 011573 378 MDKHIELSHCS-YEAFKVLAKNYL 400 (482)
Q Consensus 378 ~d~~I~~~~p~-~~~~~~l~~~~l 400 (482)
|+++|.++++. .+++.++++..+
T Consensus 191 ~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 191 FGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred cceEEEccCCCchHHHHHHHHHHH
Confidence 99999999985 567777776544
No 172
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.04 E-value=3.2e-09 Score=115.79 Aligned_cols=169 Identities=24% Similarity=0.334 Sum_probs=104.2
Q ss_pred CceeeeccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceee-c
Q 011573 187 NWVHVVFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYD-L 265 (482)
Q Consensus 187 ~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~-l 265 (482)
.|. ....|.++++|++.++..+.+...+... ..+....+.++|+||||||||++++++|++++..++. +
T Consensus 73 pW~--eKyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~ 142 (637)
T TIGR00602 73 PWV--EKYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWS 142 (637)
T ss_pred chH--HHhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHh
Confidence 464 5678999999999998877765444321 1223344569999999999999999999999877644 1
Q ss_pred c---ccc------------------ccChHHHHHHHHhc------------CCCeEEEEeCCcccccccccccccccccc
Q 011573 266 E---LTA------------------VKDNTELRKLLIET------------SSKSIIVIEDIDCSLDLTGQRRKKKEKKE 312 (482)
Q Consensus 266 ~---l~~------------------~~~~~~L~~l~~~~------------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~ 312 (482)
+ +.. ......+..++..+ ..+.||||||||.++. +
T Consensus 143 npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~----r-------- 210 (637)
T TIGR00602 143 NPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY----R-------- 210 (637)
T ss_pred hhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch----h--------
Confidence 1 100 01123344444332 2567999999998652 0
Q ss_pred cCCCCCCcccccccccccccchHHHHHHHHh-hhcccccCCCCceEEEEecCCcC--------------cCCHhhhcCCC
Q 011573 313 DEGNDKDPRQKLGKEERETNNSQVTLSGLLN-FIDGLWSACGGERLIVFTTNYIE--------------KLDPALIRKGR 377 (482)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~-~ldg~~s~~~~~~iiI~TTN~~~--------------~LD~aL~RpGR 377 (482)
....+..+|. .... .+.-.+|+.+|..+. .|.++|+...|
T Consensus 211 ---------------------~~~~lq~lLr~~~~e----~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~r 265 (637)
T TIGR00602 211 ---------------------DTRALHEILRWKYVS----IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPR 265 (637)
T ss_pred ---------------------hHHHHHHHHHHHhhc----CCCceEEEEecCCccccccccccccchhcccCHhHhcccc
Confidence 1113444544 2111 111123333442221 14478884346
Q ss_pred eeeEEEccCCCHHHHHHHHHHhcccc
Q 011573 378 MDKHIELSHCSYEAFKVLAKNYLNIE 403 (482)
Q Consensus 378 ~d~~I~~~~p~~~~~~~l~~~~l~~~ 403 (482)
+. +|.|.+.+....++.++..+..+
T Consensus 266 v~-~I~FnPia~t~l~K~L~rIl~~E 290 (637)
T TIGR00602 266 VS-NISFNPIAPTIMKKFLNRIVTIE 290 (637)
T ss_pred ee-EEEeCCCCHHHHHHHHHHHHHhh
Confidence 64 89999999999888888887543
No 173
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.02 E-value=1e-09 Score=95.15 Aligned_cols=65 Identities=26% Similarity=0.450 Sum_probs=48.1
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCc---eeeccccccc--------------------ChHHHHHHHHhcC--CCeE
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYD---LYDLELTAVK--------------------DNTELRKLLIETS--SKSI 288 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~---i~~l~l~~~~--------------------~~~~L~~l~~~~~--~~sI 288 (482)
++.++|+||||||||++++++|..+... ++.+++.... .......++..+. .+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4679999999999999999999999775 7777666432 1223444444443 3599
Q ss_pred EEEeCCcccc
Q 011573 289 IVIEDIDCSL 298 (482)
Q Consensus 289 l~iDdiD~~~ 298 (482)
|+|||++.+.
T Consensus 82 iiiDei~~~~ 91 (148)
T smart00382 82 LILDEITSLL 91 (148)
T ss_pred EEEECCcccC
Confidence 9999999864
No 174
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.00 E-value=6.4e-10 Score=104.49 Aligned_cols=46 Identities=30% Similarity=0.538 Sum_probs=35.6
Q ss_pred CccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 198 TFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 198 ~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.|++|+|.+..|+.+.-... | ..++||+||||||||++|++++..|
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999998853332 2 3699999999999999999999876
No 175
>PRK12377 putative replication protein; Provisional
Probab=99.00 E-value=1.3e-09 Score=106.29 Aligned_cols=93 Identities=19% Similarity=0.345 Sum_probs=63.1
Q ss_pred CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccC-
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKD- 272 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~- 272 (482)
.+|++.....+..+.++..+..|.... .. ...+++|+||||||||+|+.|||+++ +..++.++...+..
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a~~~a~~~---~~----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQAKSIADEL---MT----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CCcCCcccCChhHHHHHHHHHHHHHHH---Hh----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 578887655444444555565555432 11 13689999999999999999999998 56666665554411
Q ss_pred -------hHHHHHHHHhcCCCeEEEEeCCcc
Q 011573 273 -------NTELRKLLIETSSKSIIVIEDIDC 296 (482)
Q Consensus 273 -------~~~L~~l~~~~~~~sIl~iDdiD~ 296 (482)
......++.......+|+||||..
T Consensus 144 l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~ 174 (248)
T PRK12377 144 LHESYDNGQSGEKFLQELCKVDLLVLDEIGI 174 (248)
T ss_pred HHHHHhccchHHHHHHHhcCCCEEEEcCCCC
Confidence 112335566667889999999986
No 176
>PRK06526 transposase; Provisional
Probab=98.98 E-value=1.3e-09 Score=106.87 Aligned_cols=64 Identities=17% Similarity=0.354 Sum_probs=46.3
Q ss_pred CccccccCCCCchHHHHHHHHHHHh---CCceeeccccccc-------ChHHHHHHHHhcCCCeEEEEeCCccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVK-------DNTELRKLLIETSSKSIIVIEDIDCS 297 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~-------~~~~L~~l~~~~~~~sIl~iDdiD~~ 297 (482)
+.+++|+||||||||+|+.+|+.++ |+.++......+. ....+...+.......+|+|||++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccC
Confidence 4689999999999999999999876 6666555544331 11223444555567789999999974
No 177
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.97 E-value=7e-09 Score=111.05 Aligned_cols=174 Identities=21% Similarity=0.346 Sum_probs=105.8
Q ss_pred cCCCCceeeeccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCce
Q 011573 183 NNGSNWVHVVFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDL 262 (482)
Q Consensus 183 ~~~~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i 262 (482)
+....|. ..-.|.+.++|+......+++...+...+ .|..+++-+||+||||||||++++++|+++|+.+
T Consensus 4 ~~~~~W~--~ky~P~~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v 73 (519)
T PF03215_consen 4 DESEPWV--EKYAPKTLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEV 73 (519)
T ss_pred cccCccc--hhcCCCCHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCee
Confidence 3444675 56689999999999776666655554322 2344556788899999999999999999999877
Q ss_pred eec-ccccc----------cC-----------hHHHHHH-HHhc-------------CCCeEEEEeCCcccccccccccc
Q 011573 263 YDL-ELTAV----------KD-----------NTELRKL-LIET-------------SSKSIIVIEDIDCSLDLTGQRRK 306 (482)
Q Consensus 263 ~~l-~l~~~----------~~-----------~~~L~~l-~~~~-------------~~~sIl~iDdiD~~~~~~~~r~~ 306 (482)
..- +...+ .+ ......+ +... .++.||+|||+-..+. +
T Consensus 74 ~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~----~-- 147 (519)
T PF03215_consen 74 QEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFH----R-- 147 (519)
T ss_pred EEecCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccc----h--
Confidence 652 11110 00 0111111 1111 2467899999876541 0
Q ss_pred cccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCC-ceEEEEe-c------CCcC--------cCCH
Q 011573 307 KKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGG-ERLIVFT-T------NYIE--------KLDP 370 (482)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~-~~iiI~T-T------N~~~--------~LD~ 370 (482)
.....-..|..++.. .+. +.|||+| | |... .+++
T Consensus 148 --------------------------~~~~f~~~L~~~l~~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~ 197 (519)
T PF03215_consen 148 --------------------------DTSRFREALRQYLRS----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPK 197 (519)
T ss_pred --------------------------hHHHHHHHHHHHHHc----CCCCCEEEEEecccccCCCCcccccchhhhhccCH
Confidence 111122223333332 122 5777777 1 2111 4678
Q ss_pred hhhcCCCeeeEEEccCCCHHHHHHHHHHhcccc
Q 011573 371 ALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIE 403 (482)
Q Consensus 371 aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~ 403 (482)
.++...++. +|.|.+......++.+++.+..+
T Consensus 198 ~il~~~~i~-~I~FNpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 198 EILNHPGIT-RIKFNPIAPTFMKKALKRILKKE 229 (519)
T ss_pred HHHhCCCce-EEEecCCCHHHHHHHHHHHHHHH
Confidence 888765775 89999998888777777776543
No 178
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=9.2e-09 Score=104.70 Aligned_cols=125 Identities=16% Similarity=0.189 Sum_probs=91.5
Q ss_pred CcCccccccCCCCchHHHHHHHHHHHhCCce-------------------------eecccc------------------
Q 011573 232 AWKRGYLLYGPPGTGKSTMIAAMANLLGYDL-------------------------YDLELT------------------ 268 (482)
Q Consensus 232 ~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i-------------------------~~l~l~------------------ 268 (482)
..+.+|||+||+|+||+++|+++|..+.+.- +.+...
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 4467999999999999999999999885421 111100
Q ss_pred -----------cccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccc
Q 011573 269 -----------AVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERET 331 (482)
Q Consensus 269 -----------~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (482)
..-.-++++.+..... ..-|++||++|.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m---------------------------------- 144 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL---------------------------------- 144 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc----------------------------------
Confidence 0012245555554432 3458888888875
Q ss_pred cchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHh
Q 011573 332 NNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNY 399 (482)
Q Consensus 332 ~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~ 399 (482)
+....+.||..|+.. +++.++|++|++++.|.|.+++ |+ ..|.|+.|+.++..+.+...
T Consensus 145 --~~~AaNaLLKtLEEP----p~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 145 --NVAAANALLKTLEEP----PPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred --CHHHHHHHHHHhcCC----CcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 234567899999964 4668999999999999999999 99 59999999999888777654
No 179
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=9.3e-09 Score=106.59 Aligned_cols=136 Identities=24% Similarity=0.323 Sum_probs=94.8
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeec-ccccc------cChHHHHHHHHhcC--CCeEEEEeCCcccccccccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL-ELTAV------KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQR 304 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l-~l~~~------~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r 304 (482)
-..+||+||||+|||+||.-||...++|++.+ +..+. .....+++.|.++- .-+||++|||+.+++...-
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpI- 616 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPI- 616 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccccc-
Confidence 35699999999999999999999999999875 22222 12245788888874 4599999999999874311
Q ss_pred cccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCH-hhhcCCCeeeEEE
Q 011573 305 RKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDP-ALIRKGRMDKHIE 383 (482)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~-aL~RpGR~d~~I~ 383 (482)
+...+..++..|+-.+..... .|...+|++||...+-|.. .++. .|+..|+
T Consensus 617 -------------------------GPRfSN~vlQaL~VllK~~pp-kg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~ 668 (744)
T KOG0741|consen 617 -------------------------GPRFSNLVLQALLVLLKKQPP-KGRKLLIFGTTSRREVLQEMGILD--CFSSTIH 668 (744)
T ss_pred -------------------------CchhhHHHHHHHHHHhccCCC-CCceEEEEecccHHHHHHHcCHHH--hhhheee
Confidence 223466778888888877532 2333445556666655532 4556 7889999
Q ss_pred ccCCCH-HHHHHHHHH
Q 011573 384 LSHCSY-EAFKVLAKN 398 (482)
Q Consensus 384 ~~~p~~-~~~~~l~~~ 398 (482)
+|..+. ++...++..
T Consensus 669 Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 669 VPNLTTGEQLLEVLEE 684 (744)
T ss_pred cCccCchHHHHHHHHH
Confidence 998865 566555554
No 180
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.94 E-value=9.6e-09 Score=104.52 Aligned_cols=154 Identities=18% Similarity=0.220 Sum_probs=105.8
Q ss_pred CccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccChH
Q 011573 198 TFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDNT 274 (482)
Q Consensus 198 ~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~~ 274 (482)
.|++++|.....+.+++.+...... ...+||+|++||||+++|++|.... +.+++.++|..+.. .
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~-----------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPL-----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-N 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-H
Confidence 4678899999999998888877654 4689999999999999999998665 46899999998753 3
Q ss_pred HHHH-HHH-----------------hcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHH
Q 011573 275 ELRK-LLI-----------------ETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQV 336 (482)
Q Consensus 275 ~L~~-l~~-----------------~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (482)
.+.. +|. .......|||||||.+- ..
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~------------------------------------~~ 115 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAP------------------------------------ML 115 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCC------------------------------------HH
Confidence 3332 322 12346789999999962 22
Q ss_pred HHHHHHhhhcccc-cCCC------CceEEEEecCCc-------CcCCHhhhcCCCe-eeEEEccCCC--HHHHHHHHHHh
Q 011573 337 TLSGLLNFIDGLW-SACG------GERLIVFTTNYI-------EKLDPALIRKGRM-DKHIELSHCS--YEAFKVLAKNY 399 (482)
Q Consensus 337 ~ls~LL~~ldg~~-s~~~------~~~iiI~TTN~~-------~~LD~aL~RpGR~-d~~I~~~~p~--~~~~~~l~~~~ 399 (482)
....|++.|+.-. ...+ .++.||+||+.. ..+.+.|.. |+ ..+|.+|+.. .++...|+.+|
T Consensus 116 ~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~f 193 (326)
T PRK11608 116 VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHF 193 (326)
T ss_pred HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHH
Confidence 3445666665321 1111 134577777653 356678887 88 4577777763 35667777777
Q ss_pred cc
Q 011573 400 LN 401 (482)
Q Consensus 400 l~ 401 (482)
+.
T Consensus 194 l~ 195 (326)
T PRK11608 194 AI 195 (326)
T ss_pred HH
Confidence 64
No 181
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.93 E-value=2.8e-09 Score=107.23 Aligned_cols=96 Identities=22% Similarity=0.431 Sum_probs=67.8
Q ss_pred CCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccc--
Q 011573 196 PATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAV-- 270 (482)
Q Consensus 196 p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~-- 270 (482)
..+|+++...+..+..+...+..|+.. |.. | +..+|++||||||||||+|+.|||+++ |+.+..+.+..+
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~---~~~-~-~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEA---YPP-G-EKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHH---hhc-c-CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 367888877665555566666666653 221 1 346899999999999999999999998 677766655543
Q ss_pred -----cChHHHHHHHHhcCCCeEEEEeCCcc
Q 011573 271 -----KDNTELRKLLIETSSKSIIVIEDIDC 296 (482)
Q Consensus 271 -----~~~~~L~~l~~~~~~~sIl~iDdiD~ 296 (482)
..+..+...+.......+|+||||..
T Consensus 198 ~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~ 228 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVKEAPVLMLDDIGA 228 (306)
T ss_pred HHHHHHhcCcHHHHHHHhcCCCEEEEecCCC
Confidence 11123455666677889999999986
No 182
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.93 E-value=2.2e-08 Score=91.57 Aligned_cols=112 Identities=21% Similarity=0.306 Sum_probs=78.9
Q ss_pred cCccccccCCCCchHHHHHHHHHHHhCC-----------------------ceeecccccc---cChHHHHHHHHhcC--
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLLGY-----------------------DLYDLELTAV---KDNTELRKLLIETS-- 284 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l~~-----------------------~i~~l~l~~~---~~~~~L~~l~~~~~-- 284 (482)
.+..||||||+|+||+++|.++|..+-. +++.++.... -..+.++.+.....
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~ 97 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLS 97 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHH
Confidence 3568999999999999999999998722 2333332221 23466777666543
Q ss_pred ----CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEE
Q 011573 285 ----SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVF 360 (482)
Q Consensus 285 ----~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~ 360 (482)
..-|++|||+|.+ .....+.||..|+.. +...++|+
T Consensus 98 ~~~~~~KviiI~~ad~l------------------------------------~~~a~NaLLK~LEep----p~~~~fiL 137 (162)
T PF13177_consen 98 PSEGKYKVIIIDEADKL------------------------------------TEEAQNALLKTLEEP----PENTYFIL 137 (162)
T ss_dssp -TTSSSEEEEEETGGGS-------------------------------------HHHHHHHHHHHHST----TTTEEEEE
T ss_pred HhcCCceEEEeehHhhh------------------------------------hHHHHHHHHHHhcCC----CCCEEEEE
Confidence 4579999999986 344678899999975 45689999
Q ss_pred ecCCcCcCCHhhhcCCCeeeEEEccCC
Q 011573 361 TTNYIEKLDPALIRKGRMDKHIELSHC 387 (482)
Q Consensus 361 TTN~~~~LD~aL~RpGR~d~~I~~~~p 387 (482)
+|+.++.|-|.++. |+- .|.|+..
T Consensus 138 ~t~~~~~il~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 138 ITNNPSKILPTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp EES-GGGS-HHHHT--TSE-EEEE---
T ss_pred EECChHHChHHHHh--hce-EEecCCC
Confidence 99999999999999 884 7777653
No 183
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.92 E-value=3.1e-09 Score=114.45 Aligned_cols=127 Identities=17% Similarity=0.239 Sum_probs=83.8
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeec----ccccccChHHHHHH----------HHhcCCCeEEEEeCCccccccc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDL----ELTAVKDNTELRKL----------LIETSSKSIIVIEDIDCSLDLT 301 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l----~l~~~~~~~~L~~l----------~~~~~~~sIl~iDdiD~~~~~~ 301 (482)
.+||+|+||||||.+++++++......+.. ++..+.. ..++.- ........+++|||+|.+-
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~-~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~--- 313 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA-AVTRDPETREFTLEGGALVLADNGVCCIDEFDKMD--- 313 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccc-cceEccCcceEEecCccEEecCCCEEEEechhhCC---
Confidence 599999999999999999999886554432 2211210 111110 0112356899999999852
Q ss_pred ccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccc---------cCCCCceEEEEecCCcC------
Q 011573 302 GQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLW---------SACGGERLIVFTTNYIE------ 366 (482)
Q Consensus 302 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~---------s~~~~~~iiI~TTN~~~------ 366 (482)
..+.+.|+..|+.-. ..-.....||+|+|..+
T Consensus 314 ---------------------------------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~ 360 (509)
T smart00350 314 ---------------------------------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPK 360 (509)
T ss_pred ---------------------------------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCC
Confidence 224455666664311 11112356889999763
Q ss_pred -------cCCHhhhcCCCeeeEEE-ccCCCHHHHHHHHHHhcc
Q 011573 367 -------KLDPALIRKGRMDKHIE-LSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 367 -------~LD~aL~RpGR~d~~I~-~~~p~~~~~~~l~~~~l~ 401 (482)
.|+|+|+. |||..+. +.+|+.+....|+++.+.
T Consensus 361 ~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 361 LTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred cChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 59999999 9998654 588999999999988653
No 184
>PRK04132 replication factor C small subunit; Provisional
Probab=98.91 E-value=1.9e-08 Score=112.53 Aligned_cols=123 Identities=16% Similarity=0.176 Sum_probs=97.9
Q ss_pred ccccC--CCCchHHHHHHHHHHHh-----CCceeecccccccChHHHHHHHHhc----C----CCeEEEEeCCccccccc
Q 011573 237 YLLYG--PPGTGKSTMIAAMANLL-----GYDLYDLELTAVKDNTELRKLLIET----S----SKSIIVIEDIDCSLDLT 301 (482)
Q Consensus 237 ~LL~G--PpGtGKTsl~~aiA~~l-----~~~i~~l~l~~~~~~~~L~~l~~~~----~----~~sIl~iDdiD~~~~~~ 301 (482)
.+..| |++.||||+|.|+|+++ +.+++.+|.++..+.+.+++++... + ..-|++|||+|.+-
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt--- 643 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT--- 643 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC---
Confidence 56779 99999999999999998 5689999999876667777776542 1 23699999999962
Q ss_pred ccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeE
Q 011573 302 GQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKH 381 (482)
Q Consensus 302 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~ 381 (482)
....+.|+..|+.. ++...+|++||++..+.|+|+. ||. .
T Consensus 644 ---------------------------------~~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrS--RC~-~ 683 (846)
T PRK04132 644 ---------------------------------QDAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RCA-I 683 (846)
T ss_pred ---------------------------------HHHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhh--hce-E
Confidence 22456688888864 2457899999999999999998 994 9
Q ss_pred EEccCCCHHHHHHHHHHhccc
Q 011573 382 IELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 382 I~~~~p~~~~~~~l~~~~l~~ 402 (482)
+.|+.|+.++....++.....
T Consensus 684 i~F~~ls~~~i~~~L~~I~~~ 704 (846)
T PRK04132 684 FRFRPLRDEDIAKRLRYIAEN 704 (846)
T ss_pred EeCCCCCHHHHHHHHHHHHHh
Confidence 999999988888777765543
No 185
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.91 E-value=5.7e-09 Score=96.00 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=62.5
Q ss_pred cccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccChHHHHH
Q 011573 202 LAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDNTELRK 278 (482)
Q Consensus 202 l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~~~L~~ 278 (482)
|+|.....+++++.+...... +..+||+|++||||+.+|++|-+.. +.|++.++|+.+..+.--..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~-----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS-----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS-----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC-----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 456667777777777776654 5789999999999999999999876 57999999999854433445
Q ss_pred HHHhc-----------------CCCeEEEEeCCccc
Q 011573 279 LLIET-----------------SSKSIIVIEDIDCS 297 (482)
Q Consensus 279 l~~~~-----------------~~~sIl~iDdiD~~ 297 (482)
+|... ....+|||||||.+
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L 105 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDL 105 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS
T ss_pred hhccccccccccccccCCceeeccceEEeecchhhh
Confidence 55432 25689999999997
No 186
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.89 E-value=1.4e-08 Score=103.50 Aligned_cols=149 Identities=20% Similarity=0.242 Sum_probs=97.9
Q ss_pred ccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccChHHHH-H
Q 011573 203 AMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDNTELR-K 278 (482)
Q Consensus 203 ~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~~~L~-~ 278 (482)
+|.....+.+++.+...... ...+||+|++||||+++|++|.... +.|++.++|..+.. ..+. .
T Consensus 2 iG~S~~m~~~~~~~~~~a~~-----------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~~ 69 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPL-----------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDSE 69 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHHH
Confidence 45566667777777666543 4689999999999999999998765 47999999998743 2332 2
Q ss_pred HHH-----------------hcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHH
Q 011573 279 LLI-----------------ETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGL 341 (482)
Q Consensus 279 l~~-----------------~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 341 (482)
+|. ......+|||||||.+- ......|
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~------------------------------------~~~Q~~L 113 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATAS------------------------------------LLVQEKL 113 (329)
T ss_pred HhccccccccCcccccCCchhhCCCCEEEeCChHhCC------------------------------------HHHHHHH
Confidence 332 12356899999999862 2234456
Q ss_pred Hhhhcccc-cCC------CCceEEEEecCCc-------CcCCHhhhcCCCee-eEEEccCCC--HHHHHHHHHHhcc
Q 011573 342 LNFIDGLW-SAC------GGERLIVFTTNYI-------EKLDPALIRKGRMD-KHIELSHCS--YEAFKVLAKNYLN 401 (482)
Q Consensus 342 L~~ldg~~-s~~------~~~~iiI~TTN~~-------~~LD~aL~RpGR~d-~~I~~~~p~--~~~~~~l~~~~l~ 401 (482)
+..|+.-. ... ..++-+|+|||.. ..+.+.|.. |+. ..|++|+.. .++...|+..|+.
T Consensus 114 l~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 114 LRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred HHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHH
Confidence 66664321 110 1234577777643 345677777 774 466777664 5567777777765
No 187
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.88 E-value=2e-08 Score=109.06 Aligned_cols=156 Identities=20% Similarity=0.270 Sum_probs=106.1
Q ss_pred CCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccC
Q 011573 196 PATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKD 272 (482)
Q Consensus 196 p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~ 272 (482)
..+|+.++|.....+++++.+...... ...+||+|++||||+++|++|.... +.+++.++|..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVARS-----------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 357899999999999998888876643 4689999999999999999999875 57999999998843
Q ss_pred hHHHHH-HHHh-----------------cCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccch
Q 011573 273 NTELRK-LLIE-----------------TSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNS 334 (482)
Q Consensus 273 ~~~L~~-l~~~-----------------~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (482)
..+.. +|.. .....+|||||||.+-
T Consensus 261 -~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~------------------------------------ 303 (534)
T TIGR01817 261 -TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEIS------------------------------------ 303 (534)
T ss_pred -HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCC------------------------------------
Confidence 33332 3221 2246799999999862
Q ss_pred HHHHHHHHhhhccc-ccCCCC------ceEEEEecCCc-------CcCCHhhhcCCCee-eEEEccCCC--HHHHHHHHH
Q 011573 335 QVTLSGLLNFIDGL-WSACGG------ERLIVFTTNYI-------EKLDPALIRKGRMD-KHIELSHCS--YEAFKVLAK 397 (482)
Q Consensus 335 ~~~ls~LL~~ldg~-~s~~~~------~~iiI~TTN~~-------~~LD~aL~RpGR~d-~~I~~~~p~--~~~~~~l~~ 397 (482)
......|++.|+.- ....++ .+-+|+||+.. ..+.+.|.. |+. ..|.+|+.. .++...|+.
T Consensus 304 ~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~ 381 (534)
T TIGR01817 304 PAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAE 381 (534)
T ss_pred HHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHH
Confidence 22345577777532 111111 24567766542 234455555 554 467777664 566777888
Q ss_pred Hhcc
Q 011573 398 NYLN 401 (482)
Q Consensus 398 ~~l~ 401 (482)
.|+.
T Consensus 382 ~~l~ 385 (534)
T TIGR01817 382 AFLE 385 (534)
T ss_pred HHHH
Confidence 8775
No 188
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=7.8e-08 Score=97.30 Aligned_cols=123 Identities=15% Similarity=0.174 Sum_probs=92.0
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCC------------------------ceeecccc--cccChHHHHHHHHhcC---
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGY------------------------DLYDLELT--AVKDNTELRKLLIETS--- 284 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~------------------------~i~~l~l~--~~~~~~~L~~l~~~~~--- 284 (482)
+.+|||+||+|+||+++|+++|..+.+ +++.+... ....-+.++++.....
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~ 103 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA 103 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc
Confidence 569999999999999999999998743 12223211 1123456666654432
Q ss_pred ---CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEe
Q 011573 285 ---SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFT 361 (482)
Q Consensus 285 ---~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~T 361 (482)
..-|++||++|.+ +....+.||..|+.- ++..++|++
T Consensus 104 ~~g~~KV~iI~~a~~m------------------------------------~~~AaNaLLKtLEEP----p~~~~fiL~ 143 (325)
T PRK06871 104 QQGGNKVVYIQGAERL------------------------------------TEAAANALLKTLEEP----RPNTYFLLQ 143 (325)
T ss_pred ccCCceEEEEechhhh------------------------------------CHHHHHHHHHHhcCC----CCCeEEEEE
Confidence 3469999999986 234567799998874 466899999
Q ss_pred cCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHh
Q 011573 362 TNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNY 399 (482)
Q Consensus 362 TN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~ 399 (482)
|++++.|.|.++. |+. .+.|+.|+.++..+.+...
T Consensus 144 t~~~~~llpTI~S--RC~-~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 144 ADLSAALLPTIYS--RCQ-TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred ECChHhCchHHHh--hce-EEeCCCCCHHHHHHHHHHH
Confidence 9999999999999 995 8999999998887766654
No 189
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.87 E-value=2e-08 Score=111.24 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=70.4
Q ss_pred CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccCh
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDN 273 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~ 273 (482)
.+|++++|.....+++++.+...... ...+||+|++||||+++|++|.+.. +.+++.++|..+..+
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKS-----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 46889999888888888888776654 4679999999999999999999876 469999999998543
Q ss_pred HHHHHHHHh--------------cCCCeEEEEeCCccc
Q 011573 274 TELRKLLIE--------------TSSKSIIVIEDIDCS 297 (482)
Q Consensus 274 ~~L~~l~~~--------------~~~~sIl~iDdiD~~ 297 (482)
.--..+|.. ......|||||||.+
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l 428 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYL 428 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhC
Confidence 223345532 135688999999986
No 190
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.86 E-value=1.6e-08 Score=110.42 Aligned_cols=128 Identities=17% Similarity=0.251 Sum_probs=89.5
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCC--ceeeccccccc----ChHHHHHHHH-----------hcCCCeEEEEeCCccc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGY--DLYDLELTAVK----DNTELRKLLI-----------ETSSKSIIVIEDIDCS 297 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~--~i~~l~l~~~~----~~~~L~~l~~-----------~~~~~sIl~iDdiD~~ 297 (482)
.|+||.|+||||||+++++++..+.. +++.+.++... ..-.+...+. ......+||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 47999999999999999999998864 47766653211 1111121111 1124579999999986
Q ss_pred ccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcc-c--------ccCCCCceEEEEecCCcC--
Q 011573 298 LDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDG-L--------WSACGGERLIVFTTNYIE-- 366 (482)
Q Consensus 298 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-~--------~s~~~~~~iiI~TTN~~~-- 366 (482)
...+.+.|+..|+. . .........||+|+|..+
T Consensus 97 ------------------------------------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~ 140 (589)
T TIGR02031 97 ------------------------------------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGG 140 (589)
T ss_pred ------------------------------------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcccc
Confidence 23466778888862 1 111123467889999876
Q ss_pred -cCCHhhhcCCCeeeEEEccCC-CHHHHHHHHHHhc
Q 011573 367 -KLDPALIRKGRMDKHIELSHC-SYEAFKVLAKNYL 400 (482)
Q Consensus 367 -~LD~aL~RpGR~d~~I~~~~p-~~~~~~~l~~~~l 400 (482)
.|+++|+. ||+++|.+.++ ..++|..|++.++
T Consensus 141 g~L~~~Lld--Rf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 141 GGLPDHLLD--RLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred CCCCHHHHH--hccCeeecCCCCCHHHHHHHHHHHH
Confidence 79999999 99999999876 5667889998876
No 191
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.85 E-value=9.8e-09 Score=101.72 Aligned_cols=134 Identities=22% Similarity=0.383 Sum_probs=82.6
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCc---eeecccccccChHHHHHHHHhc-------------CCCeEEEEeCCccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYD---LYDLELTAVKDNTELRKLLIET-------------SSKSIIVIEDIDCS 297 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~---i~~l~l~~~~~~~~L~~l~~~~-------------~~~sIl~iDdiD~~ 297 (482)
++.+||.||+|||||++++..-..+.-. +..++++...+...+++++... .+++|+||||+..-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 5899999999999999999877666433 3345666665566666655432 24689999999972
Q ss_pred ccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhh-hc--ccccCCC------CceEEEEecCCcC--
Q 011573 298 LDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNF-ID--GLWSACG------GERLIVFTTNYIE-- 366 (482)
Q Consensus 298 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~-ld--g~~s~~~------~~~iiI~TTN~~~-- 366 (482)
- . +........+||.. || |++.... .++.+|++.|...
T Consensus 113 ~-----~--------------------------d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr 161 (272)
T PF12775_consen 113 Q-----P--------------------------DKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGR 161 (272)
T ss_dssp ----------------------------------TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT-
T ss_pred C-----C--------------------------CCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCC
Confidence 1 0 01111122344433 33 4443222 2356778877532
Q ss_pred -cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 367 -KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 367 -~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
.|++.|+| .|- .+.+++|+.+....|+..++.
T Consensus 162 ~~is~R~~r--~f~-i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 162 NPISPRFLR--HFN-ILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp -SHHHHHHT--TEE-EEE----TCCHHHHHHHHHHH
T ss_pred CCCChHHhh--heE-EEEecCCChHHHHHHHHHHHh
Confidence 48899999 885 899999999988888877765
No 192
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=1.2e-07 Score=96.57 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=92.2
Q ss_pred cCccccccCCCCchHHHHHHHHHHHhCC------------------------ceeecccc---cccChHHHHHHHHhcC-
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLLGY------------------------DLYDLELT---AVKDNTELRKLLIETS- 284 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l~~------------------------~i~~l~l~---~~~~~~~L~~l~~~~~- 284 (482)
.+.+|||+||+|+||+++|.++|..+-+ +++.+... ..-.-+.++.+.....
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 3568999999999999999999998832 22223211 1123456666655432
Q ss_pred -----CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEE
Q 011573 285 -----SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIV 359 (482)
Q Consensus 285 -----~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI 359 (482)
..-|++||++|.+ +...-+.||..|+.- ++..++|
T Consensus 103 ~~~~g~~kV~iI~~ae~m------------------------------------~~~AaNaLLKtLEEP----p~~t~fi 142 (334)
T PRK07993 103 HARLGGAKVVWLPDAALL------------------------------------TDAAANALLKTLEEP----PENTWFF 142 (334)
T ss_pred ccccCCceEEEEcchHhh------------------------------------CHHHHHHHHHHhcCC----CCCeEEE
Confidence 4569999999986 234567799999874 4668999
Q ss_pred EecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHH
Q 011573 360 FTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKN 398 (482)
Q Consensus 360 ~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~ 398 (482)
.+|++++.|.|.++. |+. .+.|+.|+.++....+..
T Consensus 143 L~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 143 LACREPARLLATLRS--RCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred EEECChhhChHHHHh--ccc-cccCCCCCHHHHHHHHHH
Confidence 999999999999999 996 789999998888776654
No 193
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=1.5e-07 Score=95.08 Aligned_cols=123 Identities=15% Similarity=0.219 Sum_probs=89.1
Q ss_pred cCccccccCCCCchHHHHHHHHHHHhCC---------------------ceeecc--cccc-------cChHHHHHHHHh
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLLGY---------------------DLYDLE--LTAV-------KDNTELRKLLIE 282 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l~~---------------------~i~~l~--l~~~-------~~~~~L~~l~~~ 282 (482)
.+.+|||+||+|+||+++|.++|..+-. +++.++ ...- -.-+.++++...
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 3568999999999999999999987732 122221 1100 123455555543
Q ss_pred cC------CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCce
Q 011573 283 TS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGER 356 (482)
Q Consensus 283 ~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~ 356 (482)
.. ..-|++||++|.+ +....+.||..|+.- +++.
T Consensus 105 ~~~~p~~g~~kV~iI~~ae~m------------------------------------~~~AaNaLLKtLEEP----p~~~ 144 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAI------------------------------------NRAACNALLKTLEEP----SPGR 144 (319)
T ss_pred HhhCcccCCcEEEEeccHhhh------------------------------------CHHHHHHHHHHhhCC----CCCC
Confidence 32 3469999999986 234567799998874 3557
Q ss_pred EEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHH
Q 011573 357 LIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKN 398 (482)
Q Consensus 357 iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~ 398 (482)
++|++|++++.|.|.++. |+. .|.|+.|+.++....+..
T Consensus 145 ~fiL~~~~~~~lLpTIrS--RCq-~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 145 YLWLISAQPARLPATIRS--RCQ-RLEFKLPPAHEALAWLLA 183 (319)
T ss_pred eEEEEECChhhCchHHHh--hhe-EeeCCCcCHHHHHHHHHH
Confidence 899999999999999999 995 899999998877766654
No 194
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.82 E-value=1.6e-08 Score=89.81 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=56.8
Q ss_pred cChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC---ceeecccccccChHHHHHHH
Q 011573 204 MEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY---DLYDLELTAVKDNTELRKLL 280 (482)
Q Consensus 204 ~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~---~i~~l~l~~~~~~~~L~~l~ 280 (482)
|.....+++.+.+..+... ...+||+|+|||||+++|++|....+. +++.++|.... .+++
T Consensus 2 G~S~~~~~l~~~l~~~a~~-----------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l 65 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKS-----------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELL 65 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCS-----------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHH
T ss_pred CCCHHHHHHHHHHHHHhCC-----------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHH
Confidence 4455667777777776654 578999999999999999999988754 56666776653 3455
Q ss_pred HhcCCCeEEEEeCCccc
Q 011573 281 IETSSKSIIVIEDIDCS 297 (482)
Q Consensus 281 ~~~~~~sIl~iDdiD~~ 297 (482)
..+ .+..|+|+|||.+
T Consensus 66 ~~a-~~gtL~l~~i~~L 81 (138)
T PF14532_consen 66 EQA-KGGTLYLKNIDRL 81 (138)
T ss_dssp HHC-TTSEEEEECGCCS
T ss_pred HHc-CCCEEEECChHHC
Confidence 554 7889999999996
No 195
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=3.6e-08 Score=100.05 Aligned_cols=123 Identities=16% Similarity=0.240 Sum_probs=88.6
Q ss_pred cCccccccCCCCchHHHHHHHHHHHhCC-------------------------ceeeccccc----------ccChHHHH
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLLGY-------------------------DLYDLELTA----------VKDNTELR 277 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l~~-------------------------~i~~l~l~~----------~~~~~~L~ 277 (482)
.+.+|||+||+|+|||++|+++|+.+.+ +++.++..+ .-.-+.++
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 4568999999999999999999998742 334443321 01345566
Q ss_pred HHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccC
Q 011573 278 KLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSA 351 (482)
Q Consensus 278 ~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~ 351 (482)
.+...+. ..-|++||++|.+ .....+.||..|+...
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~L------------------------------------d~~a~naLLk~LEep~-- 141 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESM------------------------------------NLQAANSLLKVLEEPP-- 141 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhC------------------------------------CHHHHHHHHHHHHhCc--
Confidence 6655442 3568899999985 1234556788887652
Q ss_pred CCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHH
Q 011573 352 CGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKN 398 (482)
Q Consensus 352 ~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~ 398 (482)
.+..+|++|++++.+.|.+.+ |+- .+.|+.|+.++....+..
T Consensus 142 --~~~~~Ilvth~~~~ll~ti~S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 142 --PQVVFLLVSHAADKVLPTIKS--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred --CCCEEEEEeCChHhChHHHHH--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 336788899999999999998 884 899999999887766543
No 196
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.79 E-value=3.5e-08 Score=93.04 Aligned_cols=152 Identities=20% Similarity=0.275 Sum_probs=92.7
Q ss_pred eeccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC-----ceeec
Q 011573 191 VVFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY-----DLYDL 265 (482)
Q Consensus 191 ~~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~-----~i~~l 265 (482)
+....|..+.+++|.++..+++. -+ .+-|-- ..++|.||||||||+-+.++|.+|=- -+..+
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~----vi-------a~~gnm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLS----VI-------AKEGNM--PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHH----HH-------HHcCCC--CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 35667889999999998877662 12 122221 36899999999999999999998722 24455
Q ss_pred ccccccChHHHH---HHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHH
Q 011573 266 ELTAVKDNTELR---KLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQV 336 (482)
Q Consensus 266 ~l~~~~~~~~L~---~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (482)
+.++-..-+-++ +.|.+.. +.-||++||+|.+-. |. +
T Consensus 85 NASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~--gA-------------------------------Q- 130 (333)
T KOG0991|consen 85 NASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA--GA-------------------------------Q- 130 (333)
T ss_pred cCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh--HH-------------------------------H-
Confidence 555544333333 3454432 346999999998631 11 1
Q ss_pred HHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHH
Q 011573 337 TLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKN 398 (482)
Q Consensus 337 ~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~ 398 (482)
..|-..|+-..+. .-+.+++|..+++=+.+.. |+- .+.++-.+..+...-+..
T Consensus 131 --QAlRRtMEiyS~t----tRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~ 183 (333)
T KOG0991|consen 131 --QALRRTMEIYSNT----TRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLE 183 (333)
T ss_pred --HHHHHHHHHHccc----chhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHH
Confidence 1122223322222 2477788888887766666 664 455555655554443333
No 197
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.1e-08 Score=98.50 Aligned_cols=65 Identities=32% Similarity=0.491 Sum_probs=54.3
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeeccccccc-------C-hHHHHHHHHhcC------CCeEEEEeCCcccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK-------D-NTELRKLLIETS------SKSIIVIEDIDCSL 298 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~-------~-~~~L~~l~~~~~------~~sIl~iDdiD~~~ 298 (482)
+-++||.||.|||||.||+.+|..|+.||...+.+++. + +.-|.+|+..+. .+.||+|||||.+.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIa 175 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIA 175 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhh
Confidence 45699999999999999999999999999999988873 2 234667776653 68999999999974
No 198
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=8.2e-08 Score=96.92 Aligned_cols=123 Identities=18% Similarity=0.196 Sum_probs=91.8
Q ss_pred cCccccccCCCCchHHHHHHHHHHHhCC-----------------------ceeeccccc---ccChHHHHHHHHhc---
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLLGY-----------------------DLYDLELTA---VKDNTELRKLLIET--- 283 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l~~-----------------------~i~~l~l~~---~~~~~~L~~l~~~~--- 283 (482)
.+.+|||+||+|+||+++|.++|..+-. +++.+.... .-..+.++.+....
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~ 103 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQES 103 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhC
Confidence 3568999999999999999999998732 333333211 12344566554333
Q ss_pred C---CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEE
Q 011573 284 S---SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVF 360 (482)
Q Consensus 284 ~---~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~ 360 (482)
+ ..-|++||++|.+ +....+.||..|+.- +++.++|+
T Consensus 104 ~~~~~~kV~iI~~ae~m------------------------------------~~~AaNaLLKtLEEP----p~~t~fiL 143 (319)
T PRK06090 104 SQLNGYRLFVIEPADAM------------------------------------NESASNALLKTLEEP----APNCLFLL 143 (319)
T ss_pred cccCCceEEEecchhhh------------------------------------CHHHHHHHHHHhcCC----CCCeEEEE
Confidence 2 3469999999986 234567799999874 45689999
Q ss_pred ecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHH
Q 011573 361 TTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKN 398 (482)
Q Consensus 361 TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~ 398 (482)
+|++++.|-|.++. |+. .+.|+.|+.++..+.+..
T Consensus 144 ~t~~~~~lLpTI~S--RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 144 VTHNQKRLLPTIVS--RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EECChhhChHHHHh--cce-eEeCCCCCHHHHHHHHHH
Confidence 99999999999999 995 999999999888776654
No 199
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.75 E-value=6.1e-08 Score=100.02 Aligned_cols=172 Identities=17% Similarity=0.241 Sum_probs=100.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhC-----Cceeecccc
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLG-----YDLYDLELT 268 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~-----~~i~~l~l~ 268 (482)
.+.-+|++.+..+.-.... ........ ..|. ....++||||.|.|||+|.+|++++.. ..++.+...
T Consensus 81 ~~~ytFdnFv~g~~N~~A~-aa~~~va~------~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 81 NPKYTFDNFVVGPSNRLAY-AAAKAVAE------NPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCchhheeeCCchHHHH-HHHHHHHh------ccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 3446899987665533322 22222222 2233 346789999999999999999999873 223333322
Q ss_pred cccChHHHHH-------HHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHH
Q 011573 269 AVKDNTELRK-------LLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGL 341 (482)
Q Consensus 269 ~~~~~~~L~~-------l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 341 (482)
... ..-+.. -|.+.-+--+++||||+.+. |.. .+..+|
T Consensus 153 ~f~-~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~---gk~-------------------------------~~qeef 197 (408)
T COG0593 153 DFT-NDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLA---GKE-------------------------------RTQEEF 197 (408)
T ss_pred HHH-HHHHHHHHhhhHHHHHHhhccCeeeechHhHhc---CCh-------------------------------hHHHHH
Confidence 210 000111 11111144599999999963 221 123445
Q ss_pred HhhhcccccCCCCceEEEEecCCcCc---CCHhhhcCCCee--eEEEccCCCHHHHHHHHHHhccccCCCcHHHHH
Q 011573 342 LNFIDGLWSACGGERLIVFTTNYIEK---LDPALIRKGRMD--KHIELSHCSYEAFKVLAKNYLNIESHNLFDKIG 412 (482)
Q Consensus 342 L~~ldg~~s~~~~~~iiI~TTN~~~~---LD~aL~RpGR~d--~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~ 412 (482)
.+.+..+... +..|++.+-..|.. +.|.|.. ||. ..+.+..|+.+.+..+++...........+++.
T Consensus 198 Fh~FN~l~~~--~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~ 269 (408)
T COG0593 198 FHTFNALLEN--GKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVL 269 (408)
T ss_pred HHHHHHHHhc--CCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 5555544332 22455555455554 5689998 876 567899999999999999866554444444443
No 200
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.75 E-value=2.6e-08 Score=101.07 Aligned_cols=83 Identities=19% Similarity=0.340 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccC---------hH
Q 011573 207 AEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKD---------NT 274 (482)
Q Consensus 207 ~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~---------~~ 274 (482)
+..+.+++.+..|..+. .. ...+++||||||||||+|+.|||+++ |..++.++...+.. ..
T Consensus 163 ~~~~~~~~~~~~f~~~f---~~----~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~ 235 (329)
T PRK06835 163 KNMEKILEKCKNFIENF---DK----NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDK 235 (329)
T ss_pred HHHHHHHHHHHHHHHHH---hc----cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccch
Confidence 33444555555555432 11 23789999999999999999999987 66776665554311 11
Q ss_pred HHHHHHHhcCCCeEEEEeCCcc
Q 011573 275 ELRKLLIETSSKSIIVIEDIDC 296 (482)
Q Consensus 275 ~L~~l~~~~~~~sIl~iDdiD~ 296 (482)
.....+......-+|+|||+..
T Consensus 236 ~~~~~~~~l~~~DLLIIDDlG~ 257 (329)
T PRK06835 236 ELEEVYDLLINCDLLIIDDLGT 257 (329)
T ss_pred hHHHHHHHhccCCEEEEeccCC
Confidence 1222244445668999999987
No 201
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.74 E-value=7.5e-08 Score=103.63 Aligned_cols=158 Identities=18% Similarity=0.243 Sum_probs=105.7
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeeccccccc
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVK 271 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~ 271 (482)
...+|++++|.....+.+.+.+..+... ...+||+|++||||+++|++|.+.. +.|++.++|..+.
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~i~~~A~~-----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRALVRLYARS-----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred cccchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 3467999999999999998888877654 4689999999999999999998764 6799999999885
Q ss_pred ChHHHH-HHHH------------------hcCCCeEEEEeCCcccccccccccccccccccCCCCCCccccccccccccc
Q 011573 272 DNTELR-KLLI------------------ETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETN 332 (482)
Q Consensus 272 ~~~~L~-~l~~------------------~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (482)
. ..+. .+|. +......|||||||.+-
T Consensus 276 e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp---------------------------------- 320 (526)
T TIGR02329 276 E-SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMP---------------------------------- 320 (526)
T ss_pred h-hHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCC----------------------------------
Confidence 3 2233 2332 11346789999999962
Q ss_pred chHHHHHHHHhhhcccc-cCCC------CceEEEEecCCc-C------cCCHhhhcCCCee-eEEEccCCC--HHHHHHH
Q 011573 333 NSQVTLSGLLNFIDGLW-SACG------GERLIVFTTNYI-E------KLDPALIRKGRMD-KHIELSHCS--YEAFKVL 395 (482)
Q Consensus 333 ~~~~~ls~LL~~ldg~~-s~~~------~~~iiI~TTN~~-~------~LD~aL~RpGR~d-~~I~~~~p~--~~~~~~l 395 (482)
......|+..|+.-. ..-| -++-+|+|||.. + .+.+.|.. |+. ..|++|+.. .++...|
T Consensus 321 --~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L 396 (526)
T TIGR02329 321 --LPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPL 396 (526)
T ss_pred --HHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHH
Confidence 223445666664311 1101 112466666543 1 23445554 554 567777763 4567778
Q ss_pred HHHhccc
Q 011573 396 AKNYLNI 402 (482)
Q Consensus 396 ~~~~l~~ 402 (482)
+..|+..
T Consensus 397 ~~~fl~~ 403 (526)
T TIGR02329 397 AAEYLVQ 403 (526)
T ss_pred HHHHHHH
Confidence 8888754
No 202
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.73 E-value=1.7e-07 Score=101.20 Aligned_cols=91 Identities=13% Similarity=0.242 Sum_probs=68.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeeccccccc
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVK 271 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~ 271 (482)
...+|++++|.....+++++.+...... ...+||+|++||||+++|+++.... +.+++.++|..+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~-----------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAML-----------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 4568999999998888888888765543 4579999999999999999987654 4689999999885
Q ss_pred ChHHHH-HHHHh-----------------cCCCeEEEEeCCccc
Q 011573 272 DNTELR-KLLIE-----------------TSSKSIIVIEDIDCS 297 (482)
Q Consensus 272 ~~~~L~-~l~~~-----------------~~~~sIl~iDdiD~~ 297 (482)
. ..+. .+|.. ......|||||||.+
T Consensus 268 ~-~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L 310 (520)
T PRK10820 268 D-DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEM 310 (520)
T ss_pred H-HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhC
Confidence 3 2232 33321 134578999999986
No 203
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.72 E-value=8.9e-08 Score=103.07 Aligned_cols=89 Identities=16% Similarity=0.271 Sum_probs=70.2
Q ss_pred CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHH-----------hCCceeec
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANL-----------LGYDLYDL 265 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~-----------l~~~i~~l 265 (482)
.+|++++|.....+.+.+.+..+... ...+||+|++||||+.+|++|-+. .+.|++.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s-----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS-----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 46899999999999888888777654 468999999999999999999887 46799999
Q ss_pred ccccccChHHHH-HHHH------------------hcCCCeEEEEeCCccc
Q 011573 266 ELTAVKDNTELR-KLLI------------------ETSSKSIIVIEDIDCS 297 (482)
Q Consensus 266 ~l~~~~~~~~L~-~l~~------------------~~~~~sIl~iDdiD~~ 297 (482)
+|..+.. ..+. .+|. +......||||||+.+
T Consensus 285 nCaal~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L 334 (538)
T PRK15424 285 NCGAIAE-SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 334 (538)
T ss_pred ecccCCh-hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhC
Confidence 9998853 2232 2332 1234578999999986
No 204
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.72 E-value=2.3e-07 Score=93.82 Aligned_cols=77 Identities=22% Similarity=0.375 Sum_probs=52.0
Q ss_pred ccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhC--CceeecccccccC----
Q 011573 199 FQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLG--YDLYDLELTAVKD---- 272 (482)
Q Consensus 199 ~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~--~~i~~l~l~~~~~---- 272 (482)
.+.++|..+.+++. ..+.+..+. |+--.|++||.||||||||.||-+||.+|| .||..++-+.+.+
T Consensus 23 ~~GlVGQ~~AReAa-giiv~mIk~-------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~k 94 (398)
T PF06068_consen 23 ADGLVGQEKAREAA-GIIVDMIKE-------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVK 94 (398)
T ss_dssp ETTEES-HHHHHHH-HHHHHHHHT-------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-
T ss_pred cccccChHHHHHHH-HHHHHHHhc-------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccC
Confidence 46789999988876 344444443 233468999999999999999999999997 7888887777632
Q ss_pred -hHHHHHHHHhc
Q 011573 273 -NTELRKLLIET 283 (482)
Q Consensus 273 -~~~L~~l~~~~ 283 (482)
.+.|.+.|..+
T Consensus 95 KTE~L~qa~Rra 106 (398)
T PF06068_consen 95 KTEALTQAFRRA 106 (398)
T ss_dssp HHHHHHHHHHCS
T ss_pred chHHHHHHHHHh
Confidence 23466666543
No 205
>PRK06921 hypothetical protein; Provisional
Probab=98.70 E-value=6.8e-08 Score=95.47 Aligned_cols=63 Identities=25% Similarity=0.339 Sum_probs=44.3
Q ss_pred CccccccCCCCchHHHHHHHHHHHh----CCceeecccccccC-----hHHHHHHHHhcCCCeEEEEeCCcc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL----GYDLYDLELTAVKD-----NTELRKLLIETSSKSIIVIEDIDC 296 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l----~~~i~~l~l~~~~~-----~~~L~~l~~~~~~~sIl~iDdiD~ 296 (482)
..+++|+||||||||+|+.|||+++ +..++.+....+-. ...+...+.......+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 5789999999999999999999986 55666555443311 112223344455778999999954
No 206
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.68 E-value=1e-08 Score=95.32 Aligned_cols=63 Identities=27% Similarity=0.599 Sum_probs=45.5
Q ss_pred CccccccCCCCchHHHHHHHHHHHh---CCceeecccccc-------cChHHHHHHHHhcCCCeEEEEeCCcc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAV-------KDNTELRKLLIETSSKSIIVIEDIDC 296 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~-------~~~~~L~~l~~~~~~~sIl~iDdiD~ 296 (482)
+.|++|+||||||||+||.|||+++ |+.++.++..++ .......+++......-+|+|||+-.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccce
Confidence 5799999999999999999999876 777777766654 12223445556666778999999875
No 207
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.67 E-value=2.2e-07 Score=103.80 Aligned_cols=89 Identities=19% Similarity=0.304 Sum_probs=69.1
Q ss_pred CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccCh
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDN 273 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~ 273 (482)
.+|++++|.....+.+++.+..+... ...+||+|+||||||++|++|.... +.+++.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~-----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS-----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 57889999999999998888876554 4689999999999999999998865 579999999987421
Q ss_pred HHHH-HHHH-----------------hcCCCeEEEEeCCccc
Q 011573 274 TELR-KLLI-----------------ETSSKSIIVIEDIDCS 297 (482)
Q Consensus 274 ~~L~-~l~~-----------------~~~~~sIl~iDdiD~~ 297 (482)
.+. .+|. +...+++|||||||.+
T Consensus 442 -~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L 482 (686)
T PRK15429 442 -LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 482 (686)
T ss_pred -HhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhC
Confidence 111 1111 2335689999999986
No 208
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=7.4e-08 Score=98.00 Aligned_cols=131 Identities=24% Similarity=0.388 Sum_probs=88.8
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeeccccccc-------C-hHHHHHHHHhcC------CCeEEEEeCCccccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK-------D-NTELRKLLIETS------SKSIIVIEDIDCSLD 299 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~-------~-~~~L~~l~~~~~------~~sIl~iDdiD~~~~ 299 (482)
+-.+||.||.|+|||.|++.||..++.||..++|+.+. + ++-+.+|+..+. +..|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 45799999999999999999999999999999999883 1 456788888774 679999999999741
Q ss_pred ccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhccccc---------CCCCceEEEEecC-------
Q 011573 300 LTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWS---------ACGGERLIVFTTN------- 363 (482)
Q Consensus 300 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s---------~~~~~~iiI~TTN------- 363 (482)
.. ++-+ ..-+-...-...+||..++|..- ...++.+.|=|||
T Consensus 306 ----~~-----~~i~-------------~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasG 363 (564)
T KOG0745|consen 306 ----KA-----ESIH-------------TSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASG 363 (564)
T ss_pred ----cC-----cccc-------------ccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecc
Confidence 00 0000 00011233456678888886421 1223445555555
Q ss_pred CcCcCCHhhhcCCCee-eEEEccCCC
Q 011573 364 YIEKLDPALIRKGRMD-KHIELSHCS 388 (482)
Q Consensus 364 ~~~~LD~aL~RpGR~d-~~I~~~~p~ 388 (482)
---.||.-+-| |+| ..+-|+.|+
T Consensus 364 AF~~Ldk~I~r--R~~d~slGFg~~s 387 (564)
T KOG0745|consen 364 AFVGLDKIISR--RLDDKSLGFGAPS 387 (564)
T ss_pred cccchHHHHHH--hhcchhcccCCCC
Confidence 33567888877 765 456777773
No 209
>PRK09183 transposase/IS protein; Provisional
Probab=98.66 E-value=6.1e-08 Score=95.46 Aligned_cols=64 Identities=17% Similarity=0.324 Sum_probs=45.1
Q ss_pred CccccccCCCCchHHHHHHHHHHHh---CCceeeccccccc-------ChHHHHHHHHh-cCCCeEEEEeCCccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVK-------DNTELRKLLIE-TSSKSIIVIEDIDCS 297 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~-------~~~~L~~l~~~-~~~~sIl~iDdiD~~ 297 (482)
..+++|+||||||||+|+.++|..+ |+.+..++...+. ....+...+.. ...+.+++|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 4679999999999999999998764 6666665544331 11123444544 456789999999863
No 210
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.65 E-value=9.9e-08 Score=93.62 Aligned_cols=92 Identities=26% Similarity=0.484 Sum_probs=61.2
Q ss_pred CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccC-
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKD- 272 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~- 272 (482)
..+.++-+.+...+..+..+..+.. +|. -+.+++||||||||||.|+.|||+++ |..++.+...++-.
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~---~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~ 147 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVE---FFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK 147 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHH---Hhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 3445555566666665566655542 333 35799999999999999999999988 66777776665511
Q ss_pred ------hHHH-HHHHHhcCCCeEEEEeCCcc
Q 011573 273 ------NTEL-RKLLIETSSKSIIVIEDIDC 296 (482)
Q Consensus 273 ------~~~L-~~l~~~~~~~sIl~iDdiD~ 296 (482)
+..+ .++.....+--+|+||||-.
T Consensus 148 Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~ 178 (254)
T COG1484 148 LKAAFDEGRLEEKLLRELKKVDLLIIDDIGY 178 (254)
T ss_pred HHHHHhcCchHHHHHHHhhcCCEEEEecccC
Confidence 1111 22333356778999999876
No 211
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.63 E-value=9.7e-07 Score=88.15 Aligned_cols=75 Identities=24% Similarity=0.415 Sum_probs=52.5
Q ss_pred cccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhC--CceeecccccccC-----
Q 011573 200 QTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLG--YDLYDLELTAVKD----- 272 (482)
Q Consensus 200 ~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~--~~i~~l~l~~~~~----- 272 (482)
+-++|..+.+++. ..+..-.+ -|+--.||+|+.||||||||.||-+||.+|| .||..++-+.+.+
T Consensus 39 dG~VGQ~~AReAa-GvIv~mik-------~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kK 110 (450)
T COG1224 39 DGLVGQEEAREAA-GVIVKMIK-------QGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKK 110 (450)
T ss_pred CcccchHHHHHhh-hHHHHHHH-------hCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccH
Confidence 5678888877754 33333332 2445579999999999999999999999996 6777777776632
Q ss_pred hHHHHHHHHh
Q 011573 273 NTELRKLLIE 282 (482)
Q Consensus 273 ~~~L~~l~~~ 282 (482)
...|.+.|..
T Consensus 111 TE~L~qa~Rr 120 (450)
T COG1224 111 TEALTQALRR 120 (450)
T ss_pred HHHHHHHHHH
Confidence 2345555544
No 212
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.62 E-value=1.3e-07 Score=101.11 Aligned_cols=47 Identities=23% Similarity=0.475 Sum_probs=35.8
Q ss_pred CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
..|+++.|....++.+.-.+ .....++|.||||||||++++++++.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 47899999887766552211 123579999999999999999999754
No 213
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.59 E-value=2.4e-07 Score=94.72 Aligned_cols=153 Identities=22% Similarity=0.281 Sum_probs=102.1
Q ss_pred CCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhC-------Cc-------
Q 011573 196 PATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLG-------YD------- 261 (482)
Q Consensus 196 p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~-------~~------- 261 (482)
..+|.-++|.+..|..|.-.... |--.|+|+-|+.|||||++++|||..|. ++
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 34677889999999887644322 2235899999999999999999999872 21
Q ss_pred --------------------------eeecccccccChH------HHHHHHHh-----------cCCCeEEEEeCCcccc
Q 011573 262 --------------------------LYDLELTAVKDNT------ELRKLLIE-----------TSSKSIIVIEDIDCSL 298 (482)
Q Consensus 262 --------------------------i~~l~l~~~~~~~------~L~~l~~~-----------~~~~sIl~iDdiD~~~ 298 (482)
++.+.++. +.. .+.+.+.. ..++.||+|||+.-+-
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~a--teDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~ 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGA--TEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCcc--chhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc
Confidence 11111111 111 12233321 1367899999998752
Q ss_pred cccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc---------ccccCCCCceEEEEecCCcC-cC
Q 011573 299 DLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID---------GLWSACGGERLIVFTTNYIE-KL 368 (482)
Q Consensus 299 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld---------g~~s~~~~~~iiI~TTN~~~-~L 368 (482)
......||+.+. |+.-...-..++|+|+|.-+ .|
T Consensus 158 ------------------------------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeL 201 (423)
T COG1239 158 ------------------------------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGEL 201 (423)
T ss_pred ------------------------------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCcccccc
Confidence 123445665543 43333334578999999764 68
Q ss_pred CHhhhcCCCeeeEEEccCC-CHHHHHHHHHHhcc
Q 011573 369 DPALIRKGRMDKHIELSHC-SYEAFKVLAKNYLN 401 (482)
Q Consensus 369 D~aL~RpGR~d~~I~~~~p-~~~~~~~l~~~~l~ 401 (482)
=|-|+. ||..+|...+| +.+++..+.++-+.
T Consensus 202 rpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 202 RPQLLD--RFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred chhhHh--hhcceeeccCCCCHHHHHHHHHHHHH
Confidence 899999 99999999998 56678888877654
No 214
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.59 E-value=4.5e-07 Score=97.88 Aligned_cols=88 Identities=15% Similarity=0.198 Sum_probs=68.7
Q ss_pred CccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccChH
Q 011573 198 TFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDNT 274 (482)
Q Consensus 198 ~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~~ 274 (482)
.+.+++|.....+.+.+.+...... ...+||+|++||||+.+|++|.... +.+++.++|..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~-----------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~- 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS-----------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES- 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH-
Confidence 5678999999999998888776544 5689999999999999999999875 579999999988532
Q ss_pred HHH-HHHH-----------------hcCCCeEEEEeCCccc
Q 011573 275 ELR-KLLI-----------------ETSSKSIIVIEDIDCS 297 (482)
Q Consensus 275 ~L~-~l~~-----------------~~~~~sIl~iDdiD~~ 297 (482)
.+. .+|. .......|||||||.+
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L 293 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGEL 293 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhC
Confidence 222 2332 1234578999999996
No 215
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.59 E-value=1.4e-07 Score=100.48 Aligned_cols=142 Identities=22% Similarity=0.287 Sum_probs=87.4
Q ss_pred CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCce--eeccccccc---
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDL--YDLELTAVK--- 271 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i--~~l~l~~~~--- 271 (482)
..|..+.+....++.+. +-......++|.||||||||++++.|++.+.-.- ..++.+.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~---------------laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLE---------------ITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhh---------------eeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 35677777665554431 1112245799999999999999999998763110 001111110
Q ss_pred ------------------ChHHHHHHH----------HhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccc
Q 011573 272 ------------------DNTELRKLL----------IETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQK 323 (482)
Q Consensus 272 ------------------~~~~L~~l~----------~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 323 (482)
.......++ .......+||||||+.+
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~-------------------------- 306 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEF-------------------------- 306 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhC--------------------------
Confidence 000111122 22335689999999874
Q ss_pred cccccccccchHHHHHHHHhhhc-ccc--cC------CCCceEEEEecCCcC---------------------cCCHhhh
Q 011573 324 LGKEERETNNSQVTLSGLLNFID-GLW--SA------CGGERLIVFTTNYIE---------------------KLDPALI 373 (482)
Q Consensus 324 ~~~~~~~~~~~~~~ls~LL~~ld-g~~--s~------~~~~~iiI~TTN~~~---------------------~LD~aL~ 373 (482)
...++..|++.|+ |.. +. ...+..+|+|+|... +|..+|+
T Consensus 307 ----------~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plL 376 (506)
T PRK09862 307 ----------ERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFL 376 (506)
T ss_pred ----------CHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHH
Confidence 2346677777773 221 11 123467899999753 5888999
Q ss_pred cCCCeeeEEEccCCCHHH
Q 011573 374 RKGRMDKHIELSHCSYEA 391 (482)
Q Consensus 374 RpGR~d~~I~~~~p~~~~ 391 (482)
. |||.++.+++|+.+.
T Consensus 377 D--RfdL~v~v~~~~~~~ 392 (506)
T PRK09862 377 D--RFDLSLEIPLPPPGI 392 (506)
T ss_pred h--hccEEEEeCCCCHHH
Confidence 9 999999999998763
No 216
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=98.56 E-value=3.5e-06 Score=78.77 Aligned_cols=136 Identities=21% Similarity=0.330 Sum_probs=83.6
Q ss_pred eEEEEEeeccCCCCCCcHHHHHHHHHhccccc-ccccceEEeeecCCC---------------------CceEEecCCCc
Q 011573 50 YVQITFNEFTGDRFMRSEAYSAIENYLSSKSS-TQAKRLKADIIKNSS---------------------QSLVLSMDDHE 107 (482)
Q Consensus 50 ~~ti~i~E~~~~~~~~~~~y~~~~~~ls~~~~-~~~~~l~~~~~~~~~---------------------~~~~~~~~~~~ 107 (482)
..++.|+ .+|++|+|++.||++++. ..++++.|.+...+. .++.+....+
T Consensus 26 ~~sv~I~-------~~D~~Y~~lm~Wls~q~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G- 97 (187)
T PF08740_consen 26 TSSVEIP-------SDDEAYDWLMRWLSSQPFSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPG- 97 (187)
T ss_pred EEEEEEC-------CCCHHHHHHHHHHhhCCcccccceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCC-
Confidence 3455664 369999999999998754 668999998865411 1122222221
Q ss_pred ccccccCCeeEEEEEeeeccCCccccccCCCCCceEEEEEEecccchhhhhhhHHHHHHhhHHHHhhcccc--eeeccCC
Q 011573 108 EVADEFQGIKLWWSSGKHISKSQVFSFYPATDEKRYYKLTFHKRHRDLILGPYLVSVLKEGREIKVRNRMR--KLYTNNG 185 (482)
Q Consensus 108 ~~~d~f~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~yl~~~l~~~~~~~~~~~~~--~l~~~~~ 185 (482)
.-.--|+|.-++..+.. +....+... ..+...++|+.-.+.++. |+.+|++++....++.+. .||...+
T Consensus 98 ~h~F~y~G~~~~~~R~~---~~~~~~~~~-~~~~e~l~l~~lg~s~~~-----l~~ll~ear~~~~~~~~~~t~Iy~~~~ 168 (187)
T PF08740_consen 98 THWFWYKGRWFWFSRQR---ESNSYNSWT-GAPDETLTLSCLGRSPKP-----LKDLLEEAREYYLKKQKGKTTIYRADG 168 (187)
T ss_pred CEEEEECCEEEEEEEEe---ccccccccC-CCCceEEEEEEecCCHHH-----HHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 11112333322222222 111111111 123567889888877653 688899999888766554 4888877
Q ss_pred CC--ceeeeccCCCCcccc
Q 011573 186 SN--WVHVVFEHPATFQTL 202 (482)
Q Consensus 186 ~~--w~~~~~~~p~~~~~l 202 (482)
.. |..+..++++++++|
T Consensus 169 ~~~~W~~~~~r~~RplsTV 187 (187)
T PF08740_consen 169 SEYRWRRVASRPKRPLSTV 187 (187)
T ss_pred CCCCCcCCCCcCCCCCCCC
Confidence 76 999988999999986
No 217
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.55 E-value=9.2e-07 Score=87.09 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=24.3
Q ss_pred hhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 371 ALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 371 aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
.+.+ |+...++++..+.++...++...+.
T Consensus 178 ~l~~--r~~~~~~l~~l~~~e~~~~l~~~l~ 206 (269)
T TIGR03015 178 QLRQ--RIIASCHLGPLDREETREYIEHRLE 206 (269)
T ss_pred HHHh--heeeeeeCCCCCHHHHHHHHHHHHH
Confidence 3556 8888999999999999998888775
No 218
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.54 E-value=2.3e-06 Score=93.90 Aligned_cols=50 Identities=32% Similarity=0.392 Sum_probs=39.5
Q ss_pred CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD 261 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~ 261 (482)
.-++.++|.++.++.+...+. . +++++|+||||||||++++++|+.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~----~-----------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAK----Q-----------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHH----c-----------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 567888898887776543332 1 3589999999999999999999999654
No 219
>PF13173 AAA_14: AAA domain
Probab=98.54 E-value=2e-07 Score=81.71 Aligned_cols=63 Identities=25% Similarity=0.452 Sum_probs=47.5
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC--CceeecccccccChH----HHHHHHHhc--CCCeEEEEeCCccc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG--YDLYDLELTAVKDNT----ELRKLLIET--SSKSIIVIEDIDCS 297 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~--~~i~~l~l~~~~~~~----~L~~l~~~~--~~~sIl~iDdiD~~ 297 (482)
+-++|+||+|||||++++.++..+. ..+..+++.+..... .+.+.+.+. +.+.+||||||..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh
Confidence 5688999999999999999999886 777778777653221 133444443 36799999999985
No 220
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.53 E-value=3.7e-07 Score=94.07 Aligned_cols=158 Identities=17% Similarity=0.206 Sum_probs=107.1
Q ss_pred CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHH----hCCceeecccccccC
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANL----LGYDLYDLELTAVKD 272 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~----l~~~i~~l~l~~~~~ 272 (482)
..+++|+|....-+++++.++.+-. -...+|++|++||||+.+|++|... .+.|++.+||..+..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~ap-----------~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYAP-----------SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhCC-----------CCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 5688999999888888888887432 2567999999999999999999744 367999999999987
Q ss_pred hHHHHHHHHhc-----------------CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchH
Q 011573 273 NTELRKLLIET-----------------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQ 335 (482)
Q Consensus 273 ~~~L~~l~~~~-----------------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (482)
+..+..+|.-. ....+||+|||..+.. .
T Consensus 144 n~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~-~---------------------------------- 188 (403)
T COG1221 144 NLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP-E---------------------------------- 188 (403)
T ss_pred CHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCH-h----------------------------------
Confidence 77666676532 2568999999998632 1
Q ss_pred HHHHHHHhhhcc-----ccc--CCCCceEEEEecC-CcC-cCCH--hhhcCCCeeeEEEccCC--CHHHHHHHHHHhccc
Q 011573 336 VTLSGLLNFIDG-----LWS--ACGGERLIVFTTN-YIE-KLDP--ALIRKGRMDKHIELSHC--SYEAFKVLAKNYLNI 402 (482)
Q Consensus 336 ~~ls~LL~~ldg-----~~s--~~~~~~iiI~TTN-~~~-~LD~--aL~RpGR~d~~I~~~~p--~~~~~~~l~~~~l~~ 402 (482)
..-.||.+||. +-+ .....+-+|++|| .++ .+-. .|.|. |+...|.+|+. ..+++..++.+|+..
T Consensus 189 -~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~ 266 (403)
T COG1221 189 -GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKS 266 (403)
T ss_pred -HHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHH
Confidence 22337777774 111 1112345555554 322 2222 33331 66677777776 355677788888763
No 221
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.52 E-value=1.3e-07 Score=80.41 Aligned_cols=61 Identities=25% Similarity=0.375 Sum_probs=38.4
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHHHHHHhcCCCeEEEEeCCccc
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIEDIDCS 297 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~~~~sIl~iDdiD~~ 297 (482)
+.||||||+|||++++.||..+.-.+-.-....+-....-.+.+..-....++++||+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~ 61 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQD 61 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCcc
Confidence 5799999999999999999887432211111111111112233444557789999999873
No 222
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.52 E-value=2.2e-06 Score=82.86 Aligned_cols=64 Identities=25% Similarity=0.352 Sum_probs=55.1
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHHHHHHhc-CCCeEEEEeCCccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIET-SSKSIIVIEDIDCS 297 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~-~~~sIl~iDdiD~~ 297 (482)
..|-.++||+|||||.+++++|..+|.+++.++|+...+-..+.++|..+ ...+-+++||++++
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl 96 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRL 96 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCS
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhh
Confidence 46778999999999999999999999999999999998999999999765 47899999999986
No 223
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=6.3e-06 Score=80.36 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=79.6
Q ss_pred CcCccccccCCCCchHHHHHHHHHHHhCC----------------------ceeecccc-cccChHHHHHHHHhc---C-
Q 011573 232 AWKRGYLLYGPPGTGKSTMIAAMANLLGY----------------------DLYDLELT-AVKDNTELRKLLIET---S- 284 (482)
Q Consensus 232 ~~~rg~LL~GPpGtGKTsl~~aiA~~l~~----------------------~i~~l~l~-~~~~~~~L~~l~~~~---~- 284 (482)
..+..+||+||+|+||..+|.++|..+-+ +++.+.-. ..-..++++++.... +
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 34679999999999999999999988732 11211100 001234445544332 2
Q ss_pred ---CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEe
Q 011573 285 ---SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFT 361 (482)
Q Consensus 285 ---~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~T 361 (482)
..-|++|+++|.+ .....+.||..|+.- +.+.++|++
T Consensus 85 e~~~~KV~II~~ae~m------------------------------------~~~AaNaLLK~LEEP----p~~t~fiLi 124 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL------------------------------------NKQSANSLLKLIEEP----PKNTYGIFT 124 (261)
T ss_pred hcCCCEEEEeccHhhh------------------------------------CHHHHHHHHHhhcCC----CCCeEEEEE
Confidence 3579999999986 234567799998874 456899999
Q ss_pred cCCcCcCCHhhhcCCCeeeEEEccCC
Q 011573 362 TNYIEKLDPALIRKGRMDKHIELSHC 387 (482)
Q Consensus 362 TN~~~~LD~aL~RpGR~d~~I~~~~p 387 (482)
|+.++.|.|.++. |+. .+.|+.+
T Consensus 125 t~~~~~lLpTI~S--RCq-~~~~~~~ 147 (261)
T PRK05818 125 TRNENNILNTILS--RCV-QYVVLSK 147 (261)
T ss_pred ECChHhCchHhhh--hee-eeecCCh
Confidence 9999999999999 985 5667665
No 224
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.47 E-value=1.2e-06 Score=93.44 Aligned_cols=154 Identities=18% Similarity=0.215 Sum_probs=98.9
Q ss_pred CccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccChH
Q 011573 198 TFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDNT 274 (482)
Q Consensus 198 ~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~~ 274 (482)
.+.++++.....+.+...+...... ...+|+.|++||||+++|+++.... +.+++.++|..+.. .
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~-----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~-~ 203 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRS-----------SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK-D 203 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhcc-----------CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH-H
Confidence 3566788777777776666544332 4679999999999999999999876 46899999998833 3
Q ss_pred HHHH-HHHh-----------------cCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHH
Q 011573 275 ELRK-LLIE-----------------TSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQV 336 (482)
Q Consensus 275 ~L~~-l~~~-----------------~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (482)
.+.. +|.. ...+..|||||||.+- ..
T Consensus 204 ~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~------------------------------------~~ 247 (469)
T PRK10923 204 LIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP------------------------------------LD 247 (469)
T ss_pred HHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCC------------------------------------HH
Confidence 3333 3321 2245789999999862 12
Q ss_pred HHHHHHhhhcccc-cCCC------CceEEEEecCCc-------CcCCHhhhcCCCe-eeEEEccCC--CHHHHHHHHHHh
Q 011573 337 TLSGLLNFIDGLW-SACG------GERLIVFTTNYI-------EKLDPALIRKGRM-DKHIELSHC--SYEAFKVLAKNY 399 (482)
Q Consensus 337 ~ls~LL~~ldg~~-s~~~------~~~iiI~TTN~~-------~~LD~aL~RpGR~-d~~I~~~~p--~~~~~~~l~~~~ 399 (482)
....|+.+|+.-. ..-+ -++-+|+||+.. ..+.+.|.. |+ ..+|.+|+. ..++...|+..|
T Consensus 248 ~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~ 325 (469)
T PRK10923 248 VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHF 325 (469)
T ss_pred HHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHH
Confidence 3345666665321 0001 123566666542 246677777 77 466666665 345667788777
Q ss_pred cc
Q 011573 400 LN 401 (482)
Q Consensus 400 l~ 401 (482)
+.
T Consensus 326 l~ 327 (469)
T PRK10923 326 LQ 327 (469)
T ss_pred HH
Confidence 65
No 225
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.45 E-value=1.1e-06 Score=83.87 Aligned_cols=158 Identities=25% Similarity=0.307 Sum_probs=82.2
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCC----ceeeccccccc--------------------------------------
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGY----DLYDLELTAVK-------------------------------------- 271 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~----~i~~l~l~~~~-------------------------------------- 271 (482)
.+.++|+||+|+|||+|++.+.+.+.- .+|...+....
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 468999999999999999999998832 12211111100
Q ss_pred --ChHHHHHHHHhc---CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 272 --DNTELRKLLIET---SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 272 --~~~~L~~l~~~~---~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
....+..++... ..+.||+|||+|.+. . +. ......+..|.+.++
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~-~-~~----------------------------~~~~~~~~~l~~~~~ 149 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLA-I-AS----------------------------EEDKDFLKSLRSLLD 149 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGG-B-CT----------------------------TTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHh-h-cc----------------------------cchHHHHHHHHHHHh
Confidence 011222232222 245999999999974 1 00 112345666777777
Q ss_pred ccccCCCCceEEEEecCCcC------cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCC---cHHHHHHHhcC
Q 011573 347 GLWSACGGERLIVFTTNYIE------KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHN---LFDKIGELLGE 417 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~------~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~---~~~~i~~l~~~ 417 (482)
..... .++.+|+++.... .-.+.+.. |+.. +.+++.+.++...+++..+... .. ...++..+..-
T Consensus 150 ~~~~~--~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 150 SLLSQ--QNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSL 223 (234)
T ss_dssp H------TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHH
T ss_pred hcccc--CCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHH
Confidence 74332 2344444433221 11223333 8876 9999999999999999875433 22 34455555555
Q ss_pred CCCCHHHHHH
Q 011573 418 AKMTPADVAE 427 (482)
Q Consensus 418 ~~~s~adi~~ 427 (482)
+|=.|..|..
T Consensus 224 ~gG~P~~l~~ 233 (234)
T PF01637_consen 224 TGGNPRYLQE 233 (234)
T ss_dssp HTT-HHHHHH
T ss_pred hCCCHHHHhc
Confidence 5666766653
No 226
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2.2e-06 Score=85.02 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=47.4
Q ss_pred cccChHHHHHHHHHHHHHhhCHHHHHHh-CCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccc
Q 011573 202 LAMEPAEKKEIIDDLIAFSKSEDFYARI-GRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELT 268 (482)
Q Consensus 202 l~~~~~~k~~i~~~l~~fl~~~~~y~~~-g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~ 268 (482)
++|..+.|+.+--.+.+-.++...-..+ .--.|+++|..||.|+|||-+|+.+|...+.||+.++.+
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEAT 84 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEAT 84 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEee
Confidence 5788888887766655433322111111 112468999999999999999999999999999877544
No 227
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.45 E-value=1.3e-05 Score=78.35 Aligned_cols=63 Identities=25% Similarity=0.390 Sum_probs=42.7
Q ss_pred cccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhC--Cceeecccccc
Q 011573 200 QTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLG--YDLYDLELTAV 270 (482)
Q Consensus 200 ~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~--~~i~~l~l~~~ 270 (482)
+-++|....++.. ..+.+.++.+. -..|++||.||||||||.||-||+.+|| .||..+.-+.+
T Consensus 38 ~g~vGQ~~AReAa-giivdlik~Kk-------maGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEv 102 (456)
T KOG1942|consen 38 AGFVGQENAREAA-GIIVDLIKSKK-------MAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEV 102 (456)
T ss_pred cccccchhhhhhh-hHHHHHHHhhh-------ccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhh
Confidence 4467777777653 33444444332 1258999999999999999999999995 45554443433
No 228
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.42 E-value=5e-07 Score=89.06 Aligned_cols=155 Identities=19% Similarity=0.241 Sum_probs=94.9
Q ss_pred CceeeeccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc-----
Q 011573 187 NWVHVVFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD----- 261 (482)
Q Consensus 187 ~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~----- 261 (482)
.|. ....|..+++|++.++....+ ..|... .+.| ..|+|||||||||+.+.|.|..+-.+
T Consensus 30 pwv--ekyrP~~l~dv~~~~ei~st~----~~~~~~------~~lP---h~L~YgPPGtGktsti~a~a~~ly~~~~~~~ 94 (360)
T KOG0990|consen 30 PWV--EKYRPPFLGIVIKQEPIWSTE----NRYSGM------PGLP---HLLFYGPPGTGKTSTILANARDFYSPHPTTS 94 (360)
T ss_pred CCc--cCCCCchhhhHhcCCchhhHH----HHhccC------CCCC---cccccCCCCCCCCCchhhhhhhhcCCCCchh
Confidence 454 667888899999987655444 333221 1222 89999999999999999999988542
Q ss_pred -eeeccccccc---ChHHHHHHHHhcC---------CCeEEEEeCCcccccccccccccccccccCCCCCCccccccccc
Q 011573 262 -LYDLELTAVK---DNTELRKLLIETS---------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEE 328 (482)
Q Consensus 262 -i~~l~l~~~~---~~~~L~~l~~~~~---------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 328 (482)
+..++.++-. ....-.+.|..+. ..-.+++||.|++-
T Consensus 95 m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT------------------------------ 144 (360)
T KOG0990|consen 95 MLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT------------------------------ 144 (360)
T ss_pred HHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhh------------------------------
Confidence 2233444321 1222234444443 45689999999852
Q ss_pred ccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHh
Q 011573 329 RETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNY 399 (482)
Q Consensus 329 ~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~ 399 (482)
+...+.|-..+.... .+.-++.-.|++..+.|++.. ||. ...|...+..+-.....+.
T Consensus 145 ------~~AQnALRRviek~t----~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi 202 (360)
T KOG0990|consen 145 ------RDAQNALRRVIEKYT----ANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHI 202 (360)
T ss_pred ------HHHHHHHHHHHHHhc----cceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHH
Confidence 112233334444442 234566788999999999997 775 4555554444444443333
No 229
>PHA02624 large T antigen; Provisional
Probab=98.41 E-value=9.5e-07 Score=94.63 Aligned_cols=125 Identities=21% Similarity=0.291 Sum_probs=81.2
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHHHHHHhcCCCeEEEEeCCccccccccccccccc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKE 309 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~ 309 (482)
|+|.++.+|||||||||||+++++|++.++..+..++... +.+.-.+.-+...-+.+|||+-.-. ....
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt----~ks~FwL~pl~D~~~~l~dD~t~~~---~~~~---- 495 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKGQP---ADNK---- 495 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc----chhHHHhhhhhhceEEEeeeccccc---cccc----
Confidence 6788899999999999999999999999976666555332 3344455555667899999986421 0000
Q ss_pred ccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCC----C-Cc-----eEEEEecCCcCcCCHhhhcCCCee
Q 011573 310 KKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSAC----G-GE-----RLIVFTTNYIEKLDPALIRKGRMD 379 (482)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~----~-~~-----~iiI~TTN~~~~LD~aL~RpGR~d 379 (482)
+ + ..+..-..+.-|-|.|||-..-+ . .. --+|.|||. ..||..+.- ||-
T Consensus 496 ---------~----L-----p~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~ 554 (647)
T PHA02624 496 ---------D----L-----PSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFA 554 (647)
T ss_pred ---------c----C-----CcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHH
Confidence 0 0 00111223455778889862111 0 00 127788887 467888888 998
Q ss_pred eEEEccC
Q 011573 380 KHIELSH 386 (482)
Q Consensus 380 ~~I~~~~ 386 (482)
.++.|..
T Consensus 555 ~~~~F~~ 561 (647)
T PHA02624 555 KVLDFKP 561 (647)
T ss_pred Hhccccc
Confidence 8888854
No 230
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.38 E-value=3.6e-06 Score=83.49 Aligned_cols=182 Identities=20% Similarity=0.270 Sum_probs=99.9
Q ss_pred HHHHHHhhHHHHhhcccceeeccCCCCceeeeccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCcccccc
Q 011573 161 LVSVLKEGREIKVRNRMRKLYTNNGSNWVHVVFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLY 240 (482)
Q Consensus 161 l~~~l~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~ 240 (482)
++|+...++.+.......+|-.-....|- +.+..+ ++++.+...+..|. ..-..++||+
T Consensus 9 ~~HL~~~~~~~~~l~~~eRI~~i~~~rWI--------------gY~~A~-~~L~~L~~Ll~~P~------~~Rmp~lLiv 67 (302)
T PF05621_consen 9 YSHLHPDARELLQLSDEERIAYIRADRWI--------------GYPRAK-EALDRLEELLEYPK------RHRMPNLLIV 67 (302)
T ss_pred hhhcCHHHHHHHhcCHHHHHHHHhcCCee--------------cCHHHH-HHHHHHHHHHhCCc------ccCCCceEEe
Confidence 35555555555544433333222233565 333333 44566766665542 1224689999
Q ss_pred CCCCchHHHHHHHHHHHh---------CCceeecccccccChHHHHH-HHH-----------------------hcCCCe
Q 011573 241 GPPGTGKSTMIAAMANLL---------GYDLYDLELTAVKDNTELRK-LLI-----------------------ETSSKS 287 (482)
Q Consensus 241 GPpGtGKTsl~~aiA~~l---------~~~i~~l~l~~~~~~~~L~~-l~~-----------------------~~~~~s 287 (482)
|++|.|||++++..+... ..|++.+.....-+...+-. ++. ..-..-
T Consensus 68 G~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vr 147 (302)
T PF05621_consen 68 GDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVR 147 (302)
T ss_pred cCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCc
Confidence 999999999999998755 24666665544433333221 111 112557
Q ss_pred EEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCc
Q 011573 288 IIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEK 367 (482)
Q Consensus 288 Il~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~ 367 (482)
+|+|||++.++ .|..+ .+ ..+||.|-.+.....-.++.|+|-.-...
T Consensus 148 mLIIDE~H~lL--aGs~~----------------------------~q---r~~Ln~LK~L~NeL~ipiV~vGt~~A~~a 194 (302)
T PF05621_consen 148 MLIIDEFHNLL--AGSYR----------------------------KQ---REFLNALKFLGNELQIPIVGVGTREAYRA 194 (302)
T ss_pred EEEeechHHHh--cccHH----------------------------HH---HHHHHHHHHHhhccCCCeEEeccHHHHHH
Confidence 99999999976 23322 11 22444444332222223556665433332
Q ss_pred --CCHhhhcCCCeeeEEEccCC-CHHHHHHHHHHh
Q 011573 368 --LDPALIRKGRMDKHIELSHC-SYEAFKVLAKNY 399 (482)
Q Consensus 368 --LD~aL~RpGR~d~~I~~~~p-~~~~~~~l~~~~ 399 (482)
-|+-|-+ ||+ .+.+|.= ..+++..++..+
T Consensus 195 l~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~ 226 (302)
T PF05621_consen 195 LRTDPQLAS--RFE-PFELPRWELDEEFRRLLASF 226 (302)
T ss_pred hccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHH
Confidence 3888988 997 5555532 334566666555
No 231
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.8e-06 Score=96.43 Aligned_cols=92 Identities=16% Similarity=0.284 Sum_probs=62.6
Q ss_pred cccccChHHHHHHHHHHHHHhhCHHHHHHhCCC-cCccccccCCCCchHHHHHHHHHHHh---CCceeeccccccc----
Q 011573 200 QTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRA-WKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVK---- 271 (482)
Q Consensus 200 ~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~-~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~---- 271 (482)
+.|++.++....|-+.|.....+ ++.+ +.-.+||.||.|+|||-||+|+|..+ .-.++.+++++..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~g------l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAG------LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcc------cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence 34677777777777666554321 2222 44558999999999999999999998 4467888888631
Q ss_pred ---------ChHHHHHHHHhcC--CCeEEEEeCCccc
Q 011573 272 ---------DNTELRKLLIETS--SKSIIVIEDIDCS 297 (482)
Q Consensus 272 ---------~~~~L~~l~~~~~--~~sIl~iDdiD~~ 297 (482)
.....-++..... ..+||+|||||.+
T Consensus 636 ligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 636 LIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred ccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 1223334444443 4599999999984
No 232
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.36 E-value=1.5e-06 Score=97.19 Aligned_cols=127 Identities=20% Similarity=0.263 Sum_probs=78.6
Q ss_pred cccccCCCCchHHHHHHHHHHHhCC-------ceeecccccccC-hHHH-HHH-----HHhcCCCeEEEEeCCccccccc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGY-------DLYDLELTAVKD-NTEL-RKL-----LIETSSKSIIVIEDIDCSLDLT 301 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~-------~i~~l~l~~~~~-~~~L-~~l-----~~~~~~~sIl~iDdiD~~~~~~ 301 (482)
.+||.|+||||||.+++++++.... +...+.|+.... .... ... ........+++|||+|.+-
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms--- 570 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCH--- 570 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCC---
Confidence 5999999999999999999986543 333333333210 0000 000 0112356899999999862
Q ss_pred ccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccc---------cCCCCceEEEEecCCcC------
Q 011573 302 GQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLW---------SACGGERLIVFTTNYIE------ 366 (482)
Q Consensus 302 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~---------s~~~~~~iiI~TTN~~~------ 366 (482)
....+.|+.+|+.-. ..-....-||+|+|..+
T Consensus 571 ---------------------------------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~ 617 (915)
T PTZ00111 571 ---------------------------------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKN 617 (915)
T ss_pred ---------------------------------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcc
Confidence 223455666664321 11112356889999752
Q ss_pred -------cCCHhhhcCCCeeeE-EEccCCCHHHHHHHHHHhc
Q 011573 367 -------KLDPALIRKGRMDKH-IELSHCSYEAFKVLAKNYL 400 (482)
Q Consensus 367 -------~LD~aL~RpGR~d~~-I~~~~p~~~~~~~l~~~~l 400 (482)
.|+|+|+. |||.. +-++.|+.+.=+.|+.+.+
T Consensus 618 ~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 618 KAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred cCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 37899999 99966 4567888776666665544
No 233
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=4.8e-06 Score=82.78 Aligned_cols=111 Identities=16% Similarity=0.202 Sum_probs=80.2
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCC----------------ceeeccccc---ccChHHHHHHHHhcC------CCeE
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGY----------------DLYDLELTA---VKDNTELRKLLIETS------SKSI 288 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~----------------~i~~l~l~~---~~~~~~L~~l~~~~~------~~sI 288 (482)
+..|||+||+|+||+.+|.++|..+-+ +++.+.... .-.-+.++.+..... ..-|
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv 98 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKI 98 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceE
Confidence 568999999999999999999998743 222221111 113345555554432 3469
Q ss_pred EEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcC
Q 011573 289 IVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKL 368 (482)
Q Consensus 289 l~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~L 368 (482)
++||++|.+ .....+.||..|+.- +++.++|+.|+.++.|
T Consensus 99 ~ii~~ad~m------------------------------------t~~AaNaLLK~LEEP----p~~~~fiL~~~~~~~l 138 (290)
T PRK05917 99 YIIHEADRM------------------------------------TLDAISAFLKVLEDP----PQHGVIILTSAKPQRL 138 (290)
T ss_pred EEEechhhc------------------------------------CHHHHHHHHHHhhcC----CCCeEEEEEeCChhhC
Confidence 999999986 233567799999874 4568999999999999
Q ss_pred CHhhhcCCCeeeEEEccCC
Q 011573 369 DPALIRKGRMDKHIELSHC 387 (482)
Q Consensus 369 D~aL~RpGR~d~~I~~~~p 387 (482)
.|.++. |+. .+.|+.+
T Consensus 139 l~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 139 PPTIRS--RSL-SIHIPME 154 (290)
T ss_pred cHHHHh--cce-EEEccch
Confidence 999998 885 7777754
No 234
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.36 E-value=8.7e-07 Score=77.19 Aligned_cols=38 Identities=32% Similarity=0.565 Sum_probs=29.0
Q ss_pred CccccccCCCCchHHHHHHHHHHHh--------CCceeeccccccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL--------GYDLYDLELTAVK 271 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l--------~~~i~~l~l~~~~ 271 (482)
++.++++||||+|||++++.++..+ +.+++.+++....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 3568899999999999999999988 6777777766554
No 235
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.36 E-value=2.7e-06 Score=89.52 Aligned_cols=93 Identities=18% Similarity=0.271 Sum_probs=71.8
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeeccccc
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTA 269 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~ 269 (482)
..++-+|+++++......++++.++.+... .-.+|+.|.+||||..+|++|-+.. +-||+.+||..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~t-----------dstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKT-----------DSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcCC-----------CCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 456678999999999888888877776654 4689999999999999999998876 78999999999
Q ss_pred ccChHHH-HHHHHh------------------cCCCeEEEEeCCccc
Q 011573 270 VKDNTEL-RKLLIE------------------TSSKSIIVIEDIDCS 297 (482)
Q Consensus 270 ~~~~~~L-~~l~~~------------------~~~~sIl~iDdiD~~ 297 (482)
+-.. -| ..||.. .....-||+|||-.+
T Consensus 307 iPe~-LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem 352 (560)
T COG3829 307 IPET-LLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM 352 (560)
T ss_pred CCHH-HHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccC
Confidence 8321 12 223321 124578999999875
No 236
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.35 E-value=4.3e-06 Score=88.61 Aligned_cols=88 Identities=16% Similarity=0.214 Sum_probs=61.3
Q ss_pred CccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccChH
Q 011573 198 TFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDNT 274 (482)
Q Consensus 198 ~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~~ 274 (482)
.+..+++.....+.+...+..... ....++++|++||||+.+|+++.... +.+++.++|..+.. .
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~ 204 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAP-----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-N 204 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-H
Confidence 344566666666666555543322 24679999999999999999998765 46899999998843 3
Q ss_pred HHHHH-HHh-----------------cCCCeEEEEeCCccc
Q 011573 275 ELRKL-LIE-----------------TSSKSIIVIEDIDCS 297 (482)
Q Consensus 275 ~L~~l-~~~-----------------~~~~sIl~iDdiD~~ 297 (482)
.+... |.. ...+.+|||||||.+
T Consensus 205 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l 245 (445)
T TIGR02915 205 LLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL 245 (445)
T ss_pred HHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhC
Confidence 33332 221 134679999999996
No 237
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.35 E-value=2.6e-06 Score=97.69 Aligned_cols=132 Identities=20% Similarity=0.326 Sum_probs=96.9
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHHHHH--------------------HhcCCCeEEEEeC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLL--------------------IETSSKSIIVIED 293 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~~l~--------------------~~~~~~sIl~iDd 293 (482)
.+++||.|.||+|||||+.|+|+..|-.++.++++... .|..+| ..++...-+++||
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQT---dL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDE 1619 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQT---DLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDE 1619 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccc---hHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeeh
Confidence 57899999999999999999999999999999998753 344443 3345677899999
Q ss_pred CcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcc-----------cccCCCCceEEEEec
Q 011573 294 IDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDG-----------LWSACGGERLIVFTT 362 (482)
Q Consensus 294 iD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-----------~~s~~~~~~iiI~TT 362 (482)
+.-. ++..+.||-..+|. ..+ |..+..|++|-
T Consensus 1620 iNLa------------------------------------SQSVlEGLNacLDhR~eayIPEld~~f~-~HpnfrVFAaq 1662 (4600)
T COG5271 1620 INLA------------------------------------SQSVLEGLNACLDHRREAYIPELDKTFD-VHPNFRVFAAQ 1662 (4600)
T ss_pred hhhh------------------------------------HHHHHHHHHHHHhhccccccccccceee-ccCCeeeeeec
Confidence 8853 23455666555552 222 34455666666
Q ss_pred CCc------CcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcH
Q 011573 363 NYI------EKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLF 408 (482)
Q Consensus 363 N~~------~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~ 408 (482)
|.- ..||..++. ||- .|.|...+.+....|+...++..+....
T Consensus 1663 NPq~qggGRKgLPkSF~n--RFs-vV~~d~lt~dDi~~Ia~~~yp~v~~d~~ 1711 (4600)
T COG5271 1663 NPQDQGGGRKGLPKSFLN--RFS-VVKMDGLTTDDITHIANKMYPQVNEDWR 1711 (4600)
T ss_pred CchhcCCCcccCCHHHhh--hhh-eEEecccccchHHHHHHhhCCccChHHH
Confidence 654 349999999 996 8899999888888888888775444333
No 238
>PF05729 NACHT: NACHT domain
Probab=98.35 E-value=2.3e-06 Score=77.18 Aligned_cols=24 Identities=42% Similarity=0.706 Sum_probs=21.6
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
|-++++|+||+|||++++.++..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 457899999999999999999877
No 239
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=3.4e-06 Score=84.54 Aligned_cols=123 Identities=16% Similarity=0.226 Sum_probs=90.1
Q ss_pred cCccccccCCCCchHHHHHHHHHHHhCC-------------ceeeccc-ccccChHHHHHHHHhcC-------CCeEEEE
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLLGY-------------DLYDLEL-TAVKDNTELRKLLIETS-------SKSIIVI 291 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l~~-------------~i~~l~l-~~~~~~~~L~~l~~~~~-------~~sIl~i 291 (482)
.+..|||+|++|+||+.++.++|+.+-+ ++..++. ...-.-++++.+....+ .+-|++|
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII 96 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILII 96 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEEE
Confidence 3578999999999999999999998722 2222331 11123356666665542 5679999
Q ss_pred eCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHh
Q 011573 292 EDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPA 371 (482)
Q Consensus 292 DdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~a 371 (482)
|++|.+ .....+.||..|+.. ++..++|++|+.++.|-|.
T Consensus 97 ~~~e~m------------------------------------~~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~T 136 (299)
T PRK07132 97 KNIEKT------------------------------------SNSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPT 136 (299)
T ss_pred eccccc------------------------------------CHHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHH
Confidence 999885 123456799998875 4557888888889999999
Q ss_pred hhcCCCeeeEEEccCCCHHHHHHHHHH
Q 011573 372 LIRKGRMDKHIELSHCSYEAFKVLAKN 398 (482)
Q Consensus 372 L~RpGR~d~~I~~~~p~~~~~~~l~~~ 398 (482)
++. |+. .++|.+++.++....+..
T Consensus 137 I~S--Rc~-~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 137 IVS--RCQ-VFNVKEPDQQKILAKLLS 160 (299)
T ss_pred HHh--CeE-EEECCCCCHHHHHHHHHH
Confidence 998 885 899999998887766554
No 240
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=6.8e-07 Score=92.77 Aligned_cols=48 Identities=29% Similarity=0.483 Sum_probs=39.3
Q ss_pred CCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 196 PATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 196 p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
..+|.+|.|.+..|+.+.-.. .-..++||+||||||||++++.|..-|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH---------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 458999999999999874322 125789999999999999999987755
No 241
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.30 E-value=6.1e-06 Score=87.89 Aligned_cols=152 Identities=20% Similarity=0.248 Sum_probs=96.9
Q ss_pred cccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccChHHH
Q 011573 200 QTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDNTEL 276 (482)
Q Consensus 200 ~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~~~L 276 (482)
..+++......++...+...... ...+++.|.+||||+++++++.... +.+++.++|..+. ...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~-----------~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~-~~~~ 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRS-----------DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIP-KDLI 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCc-----------CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCC-HHHH
Confidence 45777777777776666553322 4579999999999999999998775 5689999999883 3333
Q ss_pred HHHH-Hh-----------------cCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHH
Q 011573 277 RKLL-IE-----------------TSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTL 338 (482)
Q Consensus 277 ~~l~-~~-----------------~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 338 (482)
...+ .. ...++.|||||||.+- ....
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~------------------------------------~~~q 245 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMP------------------------------------LDAQ 245 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCC------------------------------------HHHH
Confidence 3332 21 1246889999999862 1234
Q ss_pred HHHHhhhccc-ccCCC------CceEEEEecCCc-------CcCCHhhhcCCCee-eEEEccCCC--HHHHHHHHHHhcc
Q 011573 339 SGLLNFIDGL-WSACG------GERLIVFTTNYI-------EKLDPALIRKGRMD-KHIELSHCS--YEAFKVLAKNYLN 401 (482)
Q Consensus 339 s~LL~~ldg~-~s~~~------~~~iiI~TTN~~-------~~LD~aL~RpGR~d-~~I~~~~p~--~~~~~~l~~~~l~ 401 (482)
..|++.|+.- ...-+ -+.-||+||+.. ..+.+.|.. |+. .+|++|+.. .++...|+..|+.
T Consensus 246 ~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~ 323 (463)
T TIGR01818 246 TRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLA 323 (463)
T ss_pred HHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHH
Confidence 4566666521 11101 123466666543 234456665 554 477777775 6777888887765
No 242
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.29 E-value=5.7e-06 Score=87.90 Aligned_cols=87 Identities=16% Similarity=0.251 Sum_probs=60.9
Q ss_pred ccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccChHH
Q 011573 199 FQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDNTE 275 (482)
Q Consensus 199 ~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~~~ 275 (482)
+..+++.......+.+.+...... ...+|++|++||||+++++++.... +.+++.++|..+.. ..
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~-----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~ 209 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALS-----------QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SL 209 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCC-----------CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HH
Confidence 344566655555666665554433 4579999999999999999998764 57899999998853 33
Q ss_pred HHH-HHHh-----------------cCCCeEEEEeCCccc
Q 011573 276 LRK-LLIE-----------------TSSKSIIVIEDIDCS 297 (482)
Q Consensus 276 L~~-l~~~-----------------~~~~sIl~iDdiD~~ 297 (482)
+.. +|.. .....+|||||||.+
T Consensus 210 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l 249 (457)
T PRK11361 210 LESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEM 249 (457)
T ss_pred HHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhC
Confidence 332 3321 124579999999996
No 243
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=4e-05 Score=76.44 Aligned_cols=119 Identities=22% Similarity=0.250 Sum_probs=83.0
Q ss_pred cCccccccCCCCchHHHHHHHHHHHhCC------------------------ceeeccccc-ccChHHHHHHHHhcC---
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLLGY------------------------DLYDLELTA-VKDNTELRKLLIETS--- 284 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l~~------------------------~i~~l~l~~-~~~~~~L~~l~~~~~--- 284 (482)
.+.+|||+|| +||+++|.++|..+-. +++.+.... .-.-+.++.+.....
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p 100 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSG 100 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCc
Confidence 3568999997 6789999999987632 122221111 112356666655432
Q ss_pred ---CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEe
Q 011573 285 ---SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFT 361 (482)
Q Consensus 285 ---~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~T 361 (482)
..-|++||++|.+ .....+.||..|+.- +.+.++|++
T Consensus 101 ~~~~~kV~II~~ad~m------------------------------------~~~AaNaLLKtLEEP----p~~t~~iL~ 140 (290)
T PRK07276 101 YEGKQQVFIIKDADKM------------------------------------HVNAANSLLKVIEEP----QSEIYIFLL 140 (290)
T ss_pred ccCCcEEEEeehhhhc------------------------------------CHHHHHHHHHHhcCC----CCCeEEEEE
Confidence 4579999999986 233567799999874 455899999
Q ss_pred cCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHH
Q 011573 362 TNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAK 397 (482)
Q Consensus 362 TN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~ 397 (482)
|+.++.|-|.++. |+- +|.|+. +.+....++.
T Consensus 141 t~~~~~lLpTI~S--Rcq-~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 141 TNDENKVLPTIKS--RTQ-IFHFPK-NEAYLIQLLE 172 (290)
T ss_pred ECChhhCchHHHH--cce-eeeCCC-cHHHHHHHHH
Confidence 9999999999999 994 888966 5555555544
No 244
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.24 E-value=1.2e-06 Score=90.16 Aligned_cols=97 Identities=18% Similarity=0.306 Sum_probs=61.8
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHhCC------cee--eccc----cccc-ChHHHHHHHHhcCCCe-EEEEeCCc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLLGY------DLY--DLEL----TAVK-DNTELRKLLIETSSKS-IIVIEDID 295 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~------~i~--~l~l----~~~~-~~~~L~~l~~~~~~~s-Il~iDdiD 295 (482)
..+.++|+.||||+|+|||+|.-...+.+.. ++. ..++ ..+. ....+..+.......+ +|+|||+.
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQ 137 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeee
Confidence 4567899999999999999999999887743 111 1111 1111 2223444444444444 99999998
Q ss_pred ccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCc
Q 011573 296 CSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYI 365 (482)
Q Consensus 296 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~ 365 (482)
.- +-.....+..|+..+=. .++++|+|+|++
T Consensus 138 V~---------------------------------DiaDAmil~rLf~~l~~------~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT---------------------------------DIADAMILKRLFEALFK------RGVVLVATSNRP 168 (362)
T ss_pred cc---------------------------------chhHHHHHHHHHHHHHH------CCCEEEecCCCC
Confidence 71 12245677777776522 348999999964
No 245
>PRK15115 response regulator GlrR; Provisional
Probab=98.22 E-value=9.6e-06 Score=85.95 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=47.9
Q ss_pred CccccccCCCCchHHHHHHHHHHHh---CCceeecccccccChHHHHH-HHHh-----------------cCCCeEEEEe
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDNTELRK-LLIE-----------------TSSKSIIVIE 292 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~~~L~~-l~~~-----------------~~~~sIl~iD 292 (482)
...++++|++||||+++|+++.... +.+++.++|..+.. ..+.. +|.. ......||||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 235 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE-QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-HHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEE
Confidence 4579999999999999999998875 57899999998843 33332 3321 2245789999
Q ss_pred CCccc
Q 011573 293 DIDCS 297 (482)
Q Consensus 293 diD~~ 297 (482)
|||.+
T Consensus 236 ~i~~l 240 (444)
T PRK15115 236 EIGDM 240 (444)
T ss_pred ccccC
Confidence 99996
No 246
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.20 E-value=4.2e-05 Score=90.41 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=42.0
Q ss_pred eeccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhC
Q 011573 191 VVFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 191 ~~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
+...++..++.++|.++..+++...+. .+....+-+-++||+|+||||||+++++.+.
T Consensus 175 l~~~~~~~~~~~vG~~~~l~~l~~lL~-----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 175 LNLTPSNDFEDFVGIEDHIAKMSSLLH-----------LESEEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred hccccCcccccccchHHHHHHHHHHHc-----------cccCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 344456778889988777776654332 1223356788999999999999999998874
No 247
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.19 E-value=1.5e-05 Score=86.92 Aligned_cols=120 Identities=19% Similarity=0.162 Sum_probs=84.2
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCC--ceeeccccc----ccChHHHHHHHHh-----------cCCCeEEEEeCCccc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGY--DLYDLELTA----VKDNTELRKLLIE-----------TSSKSIIVIEDIDCS 297 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~--~i~~l~l~~----~~~~~~L~~l~~~-----------~~~~sIl~iDdiD~~ 297 (482)
.|+||-|++|||||+++++++..+.. |+..+-.+. +-..-.|...+.. ...+.||||||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 58999999999999999999999854 666654432 1122233333322 234689999999875
Q ss_pred ccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcc---------cccCCCCceEEEEecCCc---
Q 011573 298 LDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDG---------LWSACGGERLIVFTTNYI--- 365 (482)
Q Consensus 298 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---------~~s~~~~~~iiI~TTN~~--- 365 (482)
...+++.|+..|+. .........++|+|-|..
T Consensus 106 ------------------------------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~ 149 (584)
T PRK13406 106 ------------------------------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEED 149 (584)
T ss_pred ------------------------------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcc
Confidence 34578889988862 222223345777775433
Q ss_pred CcCCHhhhcCCCeeeEEEccCCCHHHH
Q 011573 366 EKLDPALIRKGRMDKHIELSHCSYEAF 392 (482)
Q Consensus 366 ~~LD~aL~RpGR~d~~I~~~~p~~~~~ 392 (482)
+.|+++|+. ||+++|.+++|+..+.
T Consensus 150 ~~L~~~lLD--Rf~l~v~v~~~~~~~~ 174 (584)
T PRK13406 150 ERAPAALAD--RLAFHLDLDGLALRDA 174 (584)
T ss_pred cCCCHHhHh--heEEEEEcCCCChHHh
Confidence 569999999 9999999999986643
No 248
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.19 E-value=1.8e-05 Score=76.84 Aligned_cols=168 Identities=19% Similarity=0.250 Sum_probs=111.4
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-CCcee--------
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-GYDLY-------- 263 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-~~~i~-------- 263 (482)
.-.|.+|+.+....+....+..... . | --..+|+|||+|+||-+.+.++-+++ |..+.
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~----~-------~--d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t 72 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLSS----T-------G--DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT 72 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhcc----c-------C--CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE
Confidence 3467888888887777666543221 0 0 01369999999999999999999887 31111
Q ss_pred --------------------eccccccc--ChHHHHHHHHhcC-----------CCeEEEEeCCcccccccccccccccc
Q 011573 264 --------------------DLELTAVK--DNTELRKLLIETS-----------SKSIIVIEDIDCSLDLTGQRRKKKEK 310 (482)
Q Consensus 264 --------------------~l~l~~~~--~~~~L~~l~~~~~-----------~~sIl~iDdiD~~~~~~~~r~~~~~~ 310 (482)
.++.++.+ +.--++.++.+.. .--+++|-|+|.+-
T Consensus 73 ~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT------------ 140 (351)
T KOG2035|consen 73 FTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT------------ 140 (351)
T ss_pred EecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh------------
Confidence 11122222 1122455554432 12588999999862
Q ss_pred cccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHH
Q 011573 311 KEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYE 390 (482)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~ 390 (482)
+....+|-..|+...+.| -+|+.+|...++=+++.. |+ ..|.+|.|+.+
T Consensus 141 ------------------------~dAQ~aLRRTMEkYs~~~----RlIl~cns~SriIepIrS--RC-l~iRvpaps~e 189 (351)
T KOG2035|consen 141 ------------------------RDAQHALRRTMEKYSSNC----RLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDE 189 (351)
T ss_pred ------------------------HHHHHHHHHHHHHHhcCc----eEEEEecCcccchhHHhh--he-eEEeCCCCCHH
Confidence 123344566667665444 478889999999999998 88 58999999999
Q ss_pred HHHHHHHHhccccCCCcHHHH-HHHhc
Q 011573 391 AFKVLAKNYLNIESHNLFDKI-GELLG 416 (482)
Q Consensus 391 ~~~~l~~~~l~~~~~~~~~~i-~~l~~ 416 (482)
+...++...+..+...+-.++ .++++
T Consensus 190 eI~~vl~~v~~kE~l~lp~~~l~rIa~ 216 (351)
T KOG2035|consen 190 EITSVLSKVLKKEGLQLPKELLKRIAE 216 (351)
T ss_pred HHHHHHHHHHHHhcccCcHHHHHHHHH
Confidence 999999999887766555443 34444
No 249
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.16 E-value=1.7e-05 Score=83.44 Aligned_cols=73 Identities=30% Similarity=0.408 Sum_probs=51.4
Q ss_pred CCCceeeeccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 185 GSNWVHVVFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 185 ~~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
...|- ..-.|++.++|+.......++...+..+... ......|-+||+||+|||||+.++.||.++|+.+..
T Consensus 69 ~elW~--eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~------~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 69 FELWV--EKYKPRTLEELAVHKKKISEVKQWLKQVAEF------TPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred cchhH--HhcCcccHHHHhhhHHhHHHHHHHHHHHHHh------ccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence 33564 4557999999999876666665555421111 111224568899999999999999999999998775
Q ss_pred c
Q 011573 265 L 265 (482)
Q Consensus 265 l 265 (482)
-
T Consensus 141 w 141 (634)
T KOG1970|consen 141 W 141 (634)
T ss_pred e
Confidence 3
No 250
>PHA02774 E1; Provisional
Probab=98.12 E-value=1.5e-05 Score=85.34 Aligned_cols=58 Identities=24% Similarity=0.414 Sum_probs=42.8
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHhCCceee-cccccccChHHHHHHHHhcCCCeEEEEeCC
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYD-LELTAVKDNTELRKLLIETSSKSIIVIEDI 294 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~-l~l~~~~~~~~L~~l~~~~~~~sIl~iDdi 294 (482)
|+|-++.++||||||||||+++.+|++.++..++. ++..+ .-.|..+...-|++|||+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s-------~FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS-------HFWLQPLADAKIALLDDA 488 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc-------ccccchhccCCEEEEecC
Confidence 56667889999999999999999999999766544 44321 111334445569999998
No 251
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.08 E-value=2.6e-05 Score=77.37 Aligned_cols=148 Identities=23% Similarity=0.203 Sum_probs=76.5
Q ss_pred cCccccccCCCCchHHHHHHHHHHH--hC--Cc-eeecccccccC------------------------hHHHHHHHHh-
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANL--LG--YD-LYDLELTAVKD------------------------NTELRKLLIE- 282 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~--l~--~~-i~~l~l~~~~~------------------------~~~L~~l~~~- 282 (482)
..+-+.|+|++|+|||+||..+++. .. ++ ++.++++...+ ...+...+.+
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 3566889999999999999999977 32 22 22233332211 1112222222
Q ss_pred -cCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEe
Q 011573 283 -TSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFT 361 (482)
Q Consensus 283 -~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~T 361 (482)
...+++|||||++... .+..+...+-.. ..+.-||+|
T Consensus 98 L~~~~~LlVlDdv~~~~--------------------------------------~~~~l~~~~~~~----~~~~kilvT 135 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEE--------------------------------------DLEELREPLPSF----SSGSKILVT 135 (287)
T ss_dssp HCCTSEEEEEEEE-SHH--------------------------------------HH-------HCH----HSS-EEEEE
T ss_pred hccccceeeeeeecccc--------------------------------------cccccccccccc----ccccccccc
Confidence 1358999999988631 122222222111 112345667
Q ss_pred cCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccC----CCcHHHHHHHhcCCCCCHHHHH
Q 011573 362 TNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIES----HNLFDKIGELLGEAKMTPADVA 426 (482)
Q Consensus 362 TN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~----~~~~~~i~~l~~~~~~s~adi~ 426 (482)
|...... ..+- .-+..++++..+.++-..++..+..... ....+....+++..+-.|--|.
T Consensus 136 TR~~~v~-~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~ 200 (287)
T PF00931_consen 136 TRDRSVA-GSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALK 200 (287)
T ss_dssp ESCGGGG-TTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHH
T ss_pred ccccccc-cccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7554321 1111 1156899999999999999999876443 1222333445555555666554
No 252
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.07 E-value=2.6e-05 Score=82.42 Aligned_cols=85 Identities=14% Similarity=0.214 Sum_probs=59.7
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccChHHHH
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDNTELR 277 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~~~L~ 277 (482)
.+++.......++.++..+.. ....++++|.+||||+++++++.... +.+++.++|..+.. ..+.
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~-----------~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-~~~~ 207 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAP-----------SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-SLLE 207 (441)
T ss_pred ceEecCHHHHHHHHHHhhccC-----------CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-HHHH
Confidence 355666666666666543322 24679999999999999999997665 57899999998743 3344
Q ss_pred HH-HHh-----------------cCCCeEEEEeCCccc
Q 011573 278 KL-LIE-----------------TSSKSIIVIEDIDCS 297 (482)
Q Consensus 278 ~l-~~~-----------------~~~~sIl~iDdiD~~ 297 (482)
.. |.. ...+++|||||||.+
T Consensus 208 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l 245 (441)
T PRK10365 208 SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 (441)
T ss_pred HHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccC
Confidence 33 221 124678999999996
No 253
>PHA00729 NTP-binding motif containing protein
Probab=98.07 E-value=4.5e-06 Score=79.94 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.5
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCce
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDL 262 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i 262 (482)
..++|+||||||||++|.+||..++..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l 45 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKL 45 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 3799999999999999999999986443
No 254
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=5.5e-05 Score=78.32 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=103.3
Q ss_pred cccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-----CCceeecccccccChH
Q 011573 200 QTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-----GYDLYDLELTAVKDNT 274 (482)
Q Consensus 200 ~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-----~~~i~~l~l~~~~~~~ 274 (482)
++|.+-+.....+.+.+...+.. .-.+.+.+.|-||||||.+..-+-..+ ....+.++|.++....
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~---------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLEL---------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhc---------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 45667666665555444444432 235678899999999998888665554 2345778888764322
Q ss_pred H---------------------HHHHHHh----cCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccc
Q 011573 275 E---------------------LRKLLIE----TSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEER 329 (482)
Q Consensus 275 ~---------------------L~~l~~~----~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (482)
. ....|.. ...+-++|+||+|.+. .++
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~----tr~------------------------ 272 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLI----TRS------------------------ 272 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHh----hcc------------------------
Confidence 1 1122221 1246799999999975 111
Q ss_pred cccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhc----CCCeeeEEEccCCCHHHHHHHHHHhccccCC
Q 011573 330 ETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIR----KGRMDKHIELSHCSYEAFKVLAKNYLNIESH 405 (482)
Q Consensus 330 ~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~R----pGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~ 405 (482)
+. .|-.++.+....+..+|+|+..|..+.-|..|.| -+.-...+.|++.+.++...|++.-+.....
T Consensus 273 -----~~----vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t 343 (529)
T KOG2227|consen 273 -----QT----VLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST 343 (529)
T ss_pred -----cc----eeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc
Confidence 01 2333444433445668899999999887777664 2334457899999999999999998876543
No 255
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.02 E-value=0.00017 Score=78.04 Aligned_cols=130 Identities=18% Similarity=0.268 Sum_probs=82.4
Q ss_pred cccccCCCCchHHHHHHHHHHHhC----------CceeecccccccCh----------------------HHHHHHHH--
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLG----------YDLYDLELTAVKDN----------------------TELRKLLI-- 281 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~----------~~i~~l~l~~~~~~----------------------~~L~~l~~-- 281 (482)
.+.+.|-||||||.++..+-..|. ++++.+|...+... ..|..-|.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 477889999999999999988763 44444544333221 12233333
Q ss_pred -hcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEE
Q 011573 282 -ETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVF 360 (482)
Q Consensus 282 -~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~ 360 (482)
.-..++||+|||.|.++ +++ + .-|.|+.|-... .+...+||+
T Consensus 504 k~~~~~~VvLiDElD~Lv---tr~------------------------------Q---dVlYn~fdWpt~-~~sKLvvi~ 546 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILV---TRS------------------------------Q---DVLYNIFDWPTL-KNSKLVVIA 546 (767)
T ss_pred CCCCCCEEEEeccHHHHh---ccc------------------------------H---HHHHHHhcCCcC-CCCceEEEE
Confidence 11367999999999975 221 1 225666665433 334466666
Q ss_pred ecCCcCcCCHhhhc---CCCee-eEEEccCCCHHHHHHHHHHhcccc
Q 011573 361 TTNYIEKLDPALIR---KGRMD-KHIELSHCSYEAFKVLAKNYLNIE 403 (482)
Q Consensus 361 TTN~~~~LD~aL~R---pGR~d-~~I~~~~p~~~~~~~l~~~~l~~~ 403 (482)
..|+.+ |+..++- ..|++ ..|.|.+.+.+|..+|+...|...
T Consensus 547 IaNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 547 IANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred eccccc-CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence 666654 3444442 11554 357899999999999999888654
No 256
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.00 E-value=6.7e-05 Score=78.89 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=69.3
Q ss_pred CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccCh
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDN 273 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~ 273 (482)
..+..++|.....+++.+.+...... .-.+|++|++||||-.+|++|-... +.||+.+||..+..+
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s-----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPS-----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 34677889888888888888766554 4689999999999999999998876 569999999998433
Q ss_pred HHHHHHHHhc-----------------CCCeEEEEeCCccc
Q 011573 274 TELRKLLIET-----------------SSKSIIVIEDIDCS 297 (482)
Q Consensus 274 ~~L~~l~~~~-----------------~~~sIl~iDdiD~~ 297 (482)
--=..||... .....||||||..+
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m 247 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM 247 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccC
Confidence 2223345422 25689999999985
No 257
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.96 E-value=1.9e-05 Score=88.90 Aligned_cols=192 Identities=21% Similarity=0.263 Sum_probs=115.0
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhh-CHHHHHHhCCCc-Cc-cccccCCCCchHHHHHHHHHHHhCCceeeccccc
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSK-SEDFYARIGRAW-KR-GYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTA 269 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~-~~~~y~~~g~~~-~r-g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~ 269 (482)
...|.....+.+....-..+.+.+..+-+ .+.-|...+... .. .+|++||||.|||+.+.++|.++|+.++..|.+.
T Consensus 313 k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~ 392 (871)
T KOG1968|consen 313 KYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASD 392 (871)
T ss_pred ccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCccc
Confidence 34455556666666555555555544311 111222222111 12 3699999999999999999999999999999998
Q ss_pred ccChHHHHHHHHhcC--------------------CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccc
Q 011573 270 VKDNTELRKLLIETS--------------------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEER 329 (482)
Q Consensus 270 ~~~~~~L~~l~~~~~--------------------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (482)
..+...+..-+..+. ...||++||+|.++. +.|
T Consensus 393 ~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~--~dR------------------------- 445 (871)
T KOG1968|consen 393 VRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG--EDR------------------------- 445 (871)
T ss_pred cccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc--hhh-------------------------
Confidence 876666555444321 124999999998752 111
Q ss_pred cccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCH-hhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCc-
Q 011573 330 ETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDP-ALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNL- 407 (482)
Q Consensus 330 ~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~-aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~- 407 (482)
..++.+-..+... -+=+|+|+|....... ++.+ -..-|+|+-|+.+....-+..++..+....
T Consensus 446 ------g~v~~l~~l~~ks------~~Piv~~cndr~~p~sr~~~~---~~~~l~f~kP~~~~i~~ri~si~~se~~ki~ 510 (871)
T KOG1968|consen 446 ------GGVSKLSSLCKKS------SRPLVCTCNDRNLPKSRALSR---ACSDLRFSKPSSELIRSRIMSICKSEGIKIS 510 (871)
T ss_pred ------hhHHHHHHHHHhc------cCCeEEEecCCCCccccchhh---hcceeeecCCcHHHHHhhhhhhhcccceecC
Confidence 1222222222211 1458888887776555 4444 336799999999988877777765443322
Q ss_pred HHHHHHHhcCCCCCHHHHHHHh
Q 011573 408 FDKIGELLGEAKMTPADVAEHL 429 (482)
Q Consensus 408 ~~~i~~l~~~~~~s~adi~~~l 429 (482)
.+.+..+.+ .+.+||...+
T Consensus 511 ~~~l~~~s~---~~~~DiR~~i 529 (871)
T KOG1968|consen 511 DDVLEEISK---LSGGDIRQII 529 (871)
T ss_pred cHHHHHHHH---hcccCHHHHH
Confidence 223344443 3455555443
No 258
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.93 E-value=5e-06 Score=71.55 Aligned_cols=30 Identities=37% Similarity=0.833 Sum_probs=26.8
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
|++.||||+||||+++.+|..+|++++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 689999999999999999999998876543
No 259
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.90 E-value=0.00011 Score=78.99 Aligned_cols=160 Identities=26% Similarity=0.349 Sum_probs=90.0
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHhCCCc--CccccccCCCCchHHHHHHHHHHHhCCceeeccc-------cc-c
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAW--KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLEL-------TA-V 270 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~--~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l-------~~-~ 270 (482)
++.+.+++|+.|+-.+ |=.....+...| .+ --.+||+|.||||||-|.+.+++.+-.-+|.=-- +. +
T Consensus 430 sIye~edvKkglLLqL--fGGt~k~~~~~~-~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayV 506 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQL--FGGTRKEDEKSG-RFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYV 506 (804)
T ss_pred hhhcccchhhhHHHHH--hcCCcccccccc-cccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeE
Confidence 3456677777764322 222223333333 11 1249999999999999999999988666664211 10 1
Q ss_pred cChHHHHHHHHhc-----CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhh
Q 011573 271 KDNTELRKLLIET-----SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFI 345 (482)
Q Consensus 271 ~~~~~L~~l~~~~-----~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 345 (482)
.-+.+-++++.+. ....|-.|||+|.+-+ .+-+.|+..|
T Consensus 507 trd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d------------------------------------StrSvLhEvM 550 (804)
T KOG0478|consen 507 TKDPDTRQLVLESGALVLSDNGICCIDEFDKMSD------------------------------------STRSVLHEVM 550 (804)
T ss_pred EecCccceeeeecCcEEEcCCceEEchhhhhhhH------------------------------------HHHHHHHHHH
Confidence 1122233443333 4678999999999731 1223344444
Q ss_pred c---------ccccCCCCceEEEEecCCcC-------------cCCHhhhcCCCeeeEE-EccCCCHHHHHHHHHHhcc
Q 011573 346 D---------GLWSACGGERLIVFTTNYIE-------------KLDPALIRKGRMDKHI-ELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 346 d---------g~~s~~~~~~iiI~TTN~~~-------------~LD~aL~RpGR~d~~I-~~~~p~~~~~~~l~~~~l~ 401 (482)
+ |+...-.-.-=|+++.|..+ .|+|.|++ |||... -+..|+...=+.|..+..+
T Consensus 551 EQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 551 EQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred HHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHHH
Confidence 3 21110000112777778432 37899999 999664 4566766645556655543
No 260
>PRK08118 topology modulation protein; Reviewed
Probab=97.87 E-value=3.1e-05 Score=71.15 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=28.6
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
.+++.||||+||||+++.|++.++++++.++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 4889999999999999999999999988765
No 261
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.86 E-value=1.7e-05 Score=84.92 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=49.7
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-CCceeeccc
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-GYDLYDLEL 267 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-~~~i~~l~l 267 (482)
.-.-|+++.|.++.+++|++.+..-... ++ ..++-++|.||||+|||||+++||..+ .+++|.+.-
T Consensus 71 ry~fF~d~yGlee~ieriv~~l~~Aa~g------l~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 71 RYPAFEEFYGMEEAIEQIVSYFRHAAQG------LE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cccchhcccCcHHHHHHHHHHHHHHHHh------cC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 3345889999999999998777544332 11 234678899999999999999999988 467776643
No 262
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.85 E-value=7e-05 Score=70.43 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=59.3
Q ss_pred ccccCCCCchHHHHHHHH-HHHh---CCceeeccccccc-----C---------------------hHHHHHHHHhcCCC
Q 011573 237 YLLYGPPGTGKSTMIAAM-ANLL---GYDLYDLELTAVK-----D---------------------NTELRKLLIETSSK 286 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~ai-A~~l---~~~i~~l~l~~~~-----~---------------------~~~L~~l~~~~~~~ 286 (482)
+|++|.||+|||..|-.. .... |.+++. ++..+. . ...+. .....+..
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPD-DWRKLPKG 80 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHH-HHTTSGTT
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhh-hhcccCCC
Confidence 688999999999987655 4332 666665 443221 0 01111 11223478
Q ss_pred eEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcC
Q 011573 287 SIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIE 366 (482)
Q Consensus 287 sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~ 366 (482)
+||||||+...++ .|.. ........++++... ...+.-||++|.++.
T Consensus 81 ~liviDEa~~~~~---~r~~---------------------------~~~~~~~~~~~l~~h---Rh~g~diiliTQ~~~ 127 (193)
T PF05707_consen 81 SLIVIDEAQNFFP---SRSW---------------------------KGKKVPEIIEFLAQH---RHYGWDIILITQSPS 127 (193)
T ss_dssp -EEEETTGGGTSB------T----------------------------T----HHHHGGGGC---CCTT-EEEEEES-GG
T ss_pred cEEEEECChhhcC---CCcc---------------------------ccccchHHHHHHHHh---CcCCcEEEEEeCCHH
Confidence 9999999999764 2210 000011223444322 123467999999999
Q ss_pred cCCHhhhcCCCeeeEEEccCC
Q 011573 367 KLDPALIRKGRMDKHIELSHC 387 (482)
Q Consensus 367 ~LD~aL~RpGR~d~~I~~~~p 387 (482)
.||+.+++ +++.++++..+
T Consensus 128 ~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 128 QIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp GB-HHHHC--CEEEEEEEEE-
T ss_pred HHhHHHHH--HHheEEEEEee
Confidence 99999988 99999887644
No 263
>PRK07261 topology modulation protein; Provisional
Probab=97.85 E-value=2.9e-05 Score=71.65 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=27.0
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
+++.||||+||||+++.|+..++.+++.++
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D 32 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLD 32 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecC
Confidence 789999999999999999999998877654
No 264
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.82 E-value=7.1e-05 Score=66.92 Aligned_cols=29 Identities=31% Similarity=0.596 Sum_probs=23.6
Q ss_pred ccccCCCCchHHHHHHHHHHHh---CCceeec
Q 011573 237 YLLYGPPGTGKSTMIAAMANLL---GYDLYDL 265 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l 265 (482)
++++||||+|||+++.+++..+ +.+++.+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 33 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYV 33 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 5799999999999999999887 3444443
No 265
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.81 E-value=8.3e-05 Score=73.14 Aligned_cols=89 Identities=16% Similarity=0.211 Sum_probs=60.0
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCcc--ccccCCCCchHHHHHHHHHHHhCC-----ceeec-----ccc
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRG--YLLYGPPGTGKSTMIAAMANLLGY-----DLYDL-----ELT 268 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg--~LL~GPpGtGKTsl~~aiA~~l~~-----~i~~l-----~l~ 268 (482)
.|.|..-+++.|+..++.|+.++ .+++. +=|||+|||||+..++.||+.+-. +++.. ++.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~--------~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP 154 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANP--------NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFP 154 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCC--------CCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCC
Confidence 46788889999999999999874 23344 347999999999999999998721 22111 111
Q ss_pred cccC----hHHHHHHHHh---cCCCeEEEEeCCccc
Q 011573 269 AVKD----NTELRKLLIE---TSSKSIIVIEDIDCS 297 (482)
Q Consensus 269 ~~~~----~~~L~~l~~~---~~~~sIl~iDdiD~~ 297 (482)
.-.. ..+|+.-+.. ...++|+++||+|.+
T Consensus 155 ~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 155 HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 1100 1234444333 247899999999996
No 266
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.80 E-value=1.5e-05 Score=72.88 Aligned_cols=35 Identities=37% Similarity=0.484 Sum_probs=31.1
Q ss_pred CcCccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 232 AWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 232 ~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
+.+..++|+||||||||++++++|..+++++++.+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 34678999999999999999999999999988754
No 267
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.79 E-value=6.4e-05 Score=71.29 Aligned_cols=41 Identities=24% Similarity=0.389 Sum_probs=32.5
Q ss_pred hCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeeccccc
Q 011573 229 IGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTA 269 (482)
Q Consensus 229 ~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~ 269 (482)
-|+|...-++++||||||||+++..+|... +..++.++...
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 377888889999999999999999888654 55666666653
No 268
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.76 E-value=3.3e-05 Score=66.99 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=41.1
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCcc--ccccCCCCchHHHHHHHHHHHh
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRG--YLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg--~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.|.|.+-+++.|++.+..++.++ .+++. +.||||||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~--------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP--------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC--------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46788889999999999998763 23333 4489999999999999999986
No 269
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=8.6e-05 Score=76.53 Aligned_cols=104 Identities=26% Similarity=0.336 Sum_probs=63.5
Q ss_pred CccccccCCCCchHHHHHHHHHHHh----C-Cceeeccccc----------------------ccChHHHHHHHHhcCCC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL----G-YDLYDLELTA----------------------VKDNTELRKLLIETSSK 286 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l----~-~~i~~l~l~~----------------------~~~~~~L~~l~~~~~~~ 286 (482)
...++|.||+|+|||+++..||..+ | ..+..+.... +.+...+...+......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4568899999999999999999864 3 2333332222 12334455666666777
Q ss_pred eEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcC
Q 011573 287 SIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIE 366 (482)
Q Consensus 287 sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~ 366 (482)
.+|+||..-..- ....+...+..+.+.... -+..+|+-+|++.+
T Consensus 217 DlVLIDTaG~~~-----------------------------------~d~~l~e~La~L~~~~~~-~~~lLVLsAts~~~ 260 (374)
T PRK14722 217 HMVLIDTIGMSQ-----------------------------------RDRTVSDQIAMLHGADTP-VQRLLLLNATSHGD 260 (374)
T ss_pred CEEEEcCCCCCc-----------------------------------ccHHHHHHHHHHhccCCC-CeEEEEecCccChH
Confidence 888888865420 112355566666554221 12244555777888
Q ss_pred cCCHhhh
Q 011573 367 KLDPALI 373 (482)
Q Consensus 367 ~LD~aL~ 373 (482)
.++..+.
T Consensus 261 ~l~evi~ 267 (374)
T PRK14722 261 TLNEVVQ 267 (374)
T ss_pred HHHHHHH
Confidence 8776554
No 270
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.69 E-value=3.8e-05 Score=73.58 Aligned_cols=22 Identities=45% Similarity=0.893 Sum_probs=20.0
Q ss_pred ccccccCCCCchHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMAN 256 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~ 256 (482)
.-+||||+||+|||++|+.+++
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCC
Confidence 4599999999999999999984
No 271
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.64 E-value=0.00012 Score=70.43 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=32.0
Q ss_pred hCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccc
Q 011573 229 IGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELT 268 (482)
Q Consensus 229 ~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~ 268 (482)
-|++...-++++||||+|||+++..+|... +.+++.+++.
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 367777779999999999999999998754 6666666555
No 272
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.60 E-value=2e-05 Score=80.51 Aligned_cols=128 Identities=24% Similarity=0.276 Sum_probs=70.4
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeecccc----cc-----cChH----HHHHHHHhcCCCeEEEEeCCcccccccc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLELT----AV-----KDNT----ELRKLLIETSSKSIIVIEDIDCSLDLTG 302 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~----~~-----~~~~----~L~~l~~~~~~~sIl~iDdiD~~~~~~~ 302 (482)
.+||.|.||||||.|.+.+++.....+|.---+ .+ .+.. .+..-..-...+.|++|||+|.+-
T Consensus 59 hiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~---- 134 (331)
T PF00493_consen 59 HILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMK---- 134 (331)
T ss_dssp -EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT------
T ss_pred ceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeeccccccc----
Confidence 599999999999999999887765555432111 01 1100 011000112367999999999852
Q ss_pred cccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccc-c--CCC------CceEEEEecCCcC-------
Q 011573 303 QRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLW-S--ACG------GERLIVFTTNYIE------- 366 (482)
Q Consensus 303 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-s--~~~------~~~iiI~TTN~~~------- 366 (482)
......|+.+|+.-. + ..| -..-|++++|...
T Consensus 135 --------------------------------~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~ 182 (331)
T PF00493_consen 135 --------------------------------EDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNK 182 (331)
T ss_dssp --------------------------------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS
T ss_pred --------------------------------chHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhh
Confidence 112344666665311 0 001 1134888888765
Q ss_pred ------cCCHhhhcCCCeeeEEEc-cCCCHHHHHHHHHHhcc
Q 011573 367 ------KLDPALIRKGRMDKHIEL-SHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 367 ------~LD~aL~RpGR~d~~I~~-~~p~~~~~~~l~~~~l~ 401 (482)
.++++|+. |||..+.+ ..|+.+.=..+.++.+.
T Consensus 183 ~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~ 222 (331)
T PF00493_consen 183 SLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILD 222 (331)
T ss_dssp -CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHT
T ss_pred hhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEe
Confidence 47899999 99988765 56676666677776654
No 273
>PTZ00202 tuzin; Provisional
Probab=97.59 E-value=0.002 Score=67.19 Aligned_cols=77 Identities=19% Similarity=0.233 Sum_probs=53.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccChH
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNT 274 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~ 274 (482)
-|....+.+|-++....+...+.. .....++-+.|.||+|||||++++.++..++.+.|.+++.. ..+
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~----------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg--~eE 324 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRR----------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG--TED 324 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhc----------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC--HHH
Confidence 455566778877766666444421 22233467789999999999999999999998888888773 344
Q ss_pred HHHHHHHhc
Q 011573 275 ELRKLLIET 283 (482)
Q Consensus 275 ~L~~l~~~~ 283 (482)
-|+.++.+.
T Consensus 325 lLr~LL~AL 333 (550)
T PTZ00202 325 TLRSVVKAL 333 (550)
T ss_pred HHHHHHHHc
Confidence 455554443
No 274
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.55 E-value=0.00023 Score=67.24 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=39.5
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHHHHHHhcCCCeEEEEeCCccc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIEDIDCS 297 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~~~~sIl~iDdiD~~ 297 (482)
|....--++|.|+.|+|||++++.|+..+ |.=+.....+.+.+ ..+...-|+.|||++.+
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~~kd~~----~~l~~~~iveldEl~~~ 107 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFDDKDFL----EQLQGKWIVELDELDGL 107 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHHh----ccCccccCCCcHHH----HHHHHhHheeHHHHhhc
Confidence 55555668899999999999999997662 22122222222222 23445578999999984
No 275
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.55 E-value=5.6e-05 Score=67.72 Aligned_cols=31 Identities=35% Similarity=0.537 Sum_probs=28.2
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
.++|+||||+|||++++.+|..+++++++.+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3789999999999999999999999988765
No 276
>PRK13947 shikimate kinase; Provisional
Probab=97.54 E-value=5.7e-05 Score=69.16 Aligned_cols=32 Identities=31% Similarity=0.442 Sum_probs=29.3
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeeccc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLEL 267 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l 267 (482)
.++|.||||||||++++.+|..+|+++++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 48899999999999999999999999998653
No 277
>PRK03839 putative kinase; Provisional
Probab=97.54 E-value=5.2e-05 Score=70.21 Aligned_cols=30 Identities=40% Similarity=0.717 Sum_probs=27.5
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
++|.|+||+||||+++.+|+.+++++++++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999987753
No 278
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.54 E-value=0.0004 Score=72.74 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=70.1
Q ss_pred CCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccC
Q 011573 196 PATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKD 272 (482)
Q Consensus 196 p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~ 272 (482)
...+..+||......++++.+..-..+ .-.+||.|..||||..+|+||-... +.|++.+||..+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~S-----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKS-----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcC-----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 356788999999999999988776655 4589999999999999999998876 67999999998832
Q ss_pred hHHHHHHHHh-----------------cCCCeEEEEeCCccc
Q 011573 273 NTELRKLLIE-----------------TSSKSIIVIEDIDCS 297 (482)
Q Consensus 273 ~~~L~~l~~~-----------------~~~~sIl~iDdiD~~ 297 (482)
.--=.++|.. .....-||+|||-.+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel 329 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL 329 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccC
Confidence 2111223322 135689999999875
No 279
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.53 E-value=3.7e-05 Score=67.96 Aligned_cols=28 Identities=43% Similarity=0.737 Sum_probs=24.5
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
+++.||||||||++++.++..++..+++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~ 29 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVIS 29 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEe
Confidence 5789999999999999999999955544
No 280
>PRK00625 shikimate kinase; Provisional
Probab=97.52 E-value=6e-05 Score=69.71 Aligned_cols=31 Identities=29% Similarity=0.553 Sum_probs=28.9
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
.++|.|+||+|||++++.+|..+++++++++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4789999999999999999999999999876
No 281
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.00056 Score=71.09 Aligned_cols=26 Identities=46% Similarity=0.765 Sum_probs=22.9
Q ss_pred cCccccccCCCCchHHHHHHHHHHHh
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.++-++|+||+|+||||++.-+|..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999876
No 282
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00044 Score=77.76 Aligned_cols=150 Identities=21% Similarity=0.286 Sum_probs=94.2
Q ss_pred ccccccC-hHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----------CCceeeccc
Q 011573 199 FQTLAME-PAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----------GYDLYDLEL 267 (482)
Q Consensus 199 ~~~l~~~-~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----------~~~i~~l~l 267 (482)
++.+++. ++..+++++.+.+ .-++.-+|.|.||+|||.++.-+|+.. +..++.+++
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 5667775 4445555444432 224788999999999999999999876 344566666
Q ss_pred cccc--------ChHHHHHHHHh---cCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHH
Q 011573 268 TAVK--------DNTELRKLLIE---TSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQV 336 (482)
Q Consensus 268 ~~~~--------~~~~L~~l~~~---~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (482)
..+. -+..++.++.. ...+.||+|||++.+.. ... .....
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg---~g~--------------------------~~~~~ 302 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVG---SGS--------------------------NYGAI 302 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeec---CCC--------------------------cchHH
Confidence 5441 24567777765 44678999999999852 211 01122
Q ss_pred HHHHHHhhhcccccCCCCceEEEEecCCcCc-----CCHhhhcCCCeeeEEEccCCCHHHHHHHHHH
Q 011573 337 TLSGLLNFIDGLWSACGGERLIVFTTNYIEK-----LDPALIRKGRMDKHIELSHCSYEAFKVLAKN 398 (482)
Q Consensus 337 ~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~-----LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~ 398 (482)
....+|..+-+. ++.-+|+||..-+. =||||-| ||+ .+.++.|+.+....++..
T Consensus 303 d~~nlLkp~L~r-----g~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~ 361 (898)
T KOG1051|consen 303 DAANLLKPLLAR-----GGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPG 361 (898)
T ss_pred HHHHhhHHHHhc-----CCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhh
Confidence 333344333221 23678876653322 3999999 998 778888886654444443
No 283
>PRK13949 shikimate kinase; Provisional
Probab=97.50 E-value=6.6e-05 Score=69.12 Aligned_cols=32 Identities=38% Similarity=0.537 Sum_probs=29.5
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
+.++|.||||+|||++++.+|+.+++++++++
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 35899999999999999999999999999876
No 284
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.50 E-value=0.00037 Score=66.49 Aligned_cols=38 Identities=29% Similarity=0.464 Sum_probs=30.1
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeeccc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLEL 267 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l 267 (482)
|++..+-++++||||||||+++..+|.+. +.+++.++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 67777779999999999999999998765 455555543
No 285
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.45 E-value=0.00091 Score=70.01 Aligned_cols=123 Identities=23% Similarity=0.190 Sum_probs=73.2
Q ss_pred HhCCCcCccccccCCCCchHHHHHHHHHHHhCCc-eeecccccccChHHHHHH---HHhcC--CCeEEEEeCCccccccc
Q 011573 228 RIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD-LYDLELTAVKDNTELRKL---LIETS--SKSIIVIEDIDCSLDLT 301 (482)
Q Consensus 228 ~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~-i~~l~l~~~~~~~~L~~l---~~~~~--~~sIl~iDdiD~~~~~~ 301 (482)
.....++ -++++||.+||||++++-+...+.-. +|...+....+..++.+. +.... .++.||||||.+.-+
T Consensus 32 ~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~-- 108 (398)
T COG1373 32 KLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPD-- 108 (398)
T ss_pred hcccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchh--
Confidence 3333444 78999999999999998888887554 343334333333333322 22222 458999999998521
Q ss_pred ccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCc-CCHhhhcCCCeee
Q 011573 302 GQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEK-LDPALIRKGRMDK 380 (482)
Q Consensus 302 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~-LD~aL~RpGR~d~ 380 (482)
-... +-...|.- .. .++|.++|..-. ...+-.=|||. .
T Consensus 109 --------------------------------W~~~---lk~l~d~~----~~-~v~itgsss~ll~~~~~~~L~GR~-~ 147 (398)
T COG1373 109 --------------------------------WERA---LKYLYDRG----NL-DVLITGSSSSLLSKEISESLAGRG-K 147 (398)
T ss_pred --------------------------------HHHH---HHHHHccc----cc-eEEEECCchhhhccchhhhcCCCc-e
Confidence 1111 22223321 11 356665555433 23444557895 5
Q ss_pred EEEccCCCHHHHHH
Q 011573 381 HIELSHCSYEAFKV 394 (482)
Q Consensus 381 ~I~~~~p~~~~~~~ 394 (482)
.+++.+.++.++..
T Consensus 148 ~~~l~PlSF~Efl~ 161 (398)
T COG1373 148 DLELYPLSFREFLK 161 (398)
T ss_pred eEEECCCCHHHHHh
Confidence 89999999998854
No 286
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.45 E-value=7.6e-05 Score=68.36 Aligned_cols=32 Identities=34% Similarity=0.427 Sum_probs=29.9
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
+.+.|.|++|+||||+.+++|+.|+++|++.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 56899999999999999999999999999875
No 287
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.41 E-value=0.00057 Score=68.32 Aligned_cols=155 Identities=23% Similarity=0.273 Sum_probs=93.6
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHH-H--HHhCCceeecccccc-cC----
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAM-A--NLLGYDLYDLELTAV-KD---- 272 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~ai-A--~~l~~~i~~l~l~~~-~~---- 272 (482)
.+.|..+..+.+-+.++.-.-. .-...+++.||.|+|||.++... + .+.|-+++.+-+... .+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 3455555566665544432221 11468999999999999887643 3 367777776655532 11
Q ss_pred ----------------------hHHHHHHHHhc-------CCCeEEEEeCCcccccccccccccccccccCCCCCCcccc
Q 011573 273 ----------------------NTELRKLLIET-------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQK 323 (482)
Q Consensus 273 ----------------------~~~L~~l~~~~-------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 323 (482)
.+.+..++... ..+.|.++||||-+.+ .
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~---h-------------------- 152 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP---H-------------------- 152 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc---c--------------------
Confidence 12233333322 1345666789998642 1
Q ss_pred cccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcC---cCCHhhhcCCCeeeE-EEccCC-CHHHHHHHHHH
Q 011573 324 LGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIE---KLDPALIRKGRMDKH-IELSHC-SYEAFKVLAKN 398 (482)
Q Consensus 324 ~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~---~LD~aL~RpGR~d~~-I~~~~p-~~~~~~~l~~~ 398 (482)
.+.++ |.|..|-..++ .-++.||+.|.+.+ .|...... ||... |.|.++ ..++...+++.
T Consensus 153 ----------~rQtl--lYnlfDisqs~-r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ 217 (408)
T KOG2228|consen 153 ----------SRQTL--LYNLFDISQSA-RAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRK 217 (408)
T ss_pred ----------hhhHH--HHHHHHHHhhc-CCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHH
Confidence 12222 55777766543 34577887665544 45566666 88755 776655 68899999999
Q ss_pred hccc
Q 011573 399 YLNI 402 (482)
Q Consensus 399 ~l~~ 402 (482)
.+..
T Consensus 218 ll~v 221 (408)
T KOG2228|consen 218 LLSV 221 (408)
T ss_pred HhcC
Confidence 8843
No 288
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.41 E-value=0.00035 Score=79.01 Aligned_cols=63 Identities=16% Similarity=0.343 Sum_probs=40.3
Q ss_pred CccccccCCCCchHHHHHHHHHHH-----hCCceeec----------ccccccC--------------hHHHHHHHHhcC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL-----LGYDLYDL----------ELTAVKD--------------NTELRKLLIETS 284 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~-----l~~~i~~l----------~l~~~~~--------------~~~L~~l~~~~~ 284 (482)
.+.++|.||.++|||++.+.++-. .|+++-.- -+..+.+ -..+..++..+.
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~ 406 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKAD 406 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCC
Confidence 357899999999999999988643 34332211 1111111 123444555667
Q ss_pred CCeEEEEeCCcc
Q 011573 285 SKSIIVIEDIDC 296 (482)
Q Consensus 285 ~~sIl~iDdiD~ 296 (482)
.+++++|||+-.
T Consensus 407 ~~sLvLlDE~~~ 418 (782)
T PRK00409 407 KNSLVLFDELGA 418 (782)
T ss_pred cCcEEEecCCCC
Confidence 899999999876
No 289
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.41 E-value=0.0026 Score=66.08 Aligned_cols=89 Identities=19% Similarity=0.141 Sum_probs=58.6
Q ss_pred EEEEecCC--cCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccC---------------------CCcHHHHHH
Q 011573 357 LIVFTTNY--IEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIES---------------------HNLFDKIGE 413 (482)
Q Consensus 357 iiI~TTN~--~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~---------------------~~~~~~i~~ 413 (482)
+|+.|++. ...|..||= .|.-..|.++-++.+.-+..+...|.... .....++..
T Consensus 186 VIFlT~dv~~~k~LskaLP--n~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~ 263 (431)
T PF10443_consen 186 VIFLTDDVSYSKPLSKALP--NRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDE 263 (431)
T ss_pred EEEECCCCchhhhHHHhCC--CCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHH
Confidence 44444432 234555664 47778999999999999999998886531 124455666
Q ss_pred HhcCCCCCHHHHHHHhcccCCCCCHHHHHHHHHH
Q 011573 414 LLGEAKMTPADVAEHLMPKTFPADVEFSLRSLNQ 447 (482)
Q Consensus 414 l~~~~~~s~adi~~~l~~~~~~~~~~~~~~~l~~ 447 (482)
.++..|==--|+..+..+-..++.+..|+++++.
T Consensus 264 ~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 264 CIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6665554455666454444467889999988866
No 290
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.41 E-value=0.0025 Score=66.35 Aligned_cols=60 Identities=17% Similarity=0.298 Sum_probs=38.4
Q ss_pred CccccccCCCCchHHHHHHHHHHH--h--CCceeecccccccChHHHHHHHHhcCCCeEEEEeCCccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL--L--GYDLYDLELTAVKDNTELRKLLIETSSKSIIVIEDIDCS 297 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~--l--~~~i~~l~l~~~~~~~~L~~l~~~~~~~sIl~iDdiD~~ 297 (482)
..++++.||||||||+++.+++.+ + | .......+-.+-. ...+......-+|+|||+--+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~-~~~lg~v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS-TRQIGLVGRWDVVAFDEVATL 272 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH-HHHHhhhccCCEEEEEcCCCC
Confidence 468999999999999999998877 2 3 1111111100000 133334456789999999874
No 291
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.40 E-value=0.00032 Score=67.83 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=28.5
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeec
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDL 265 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l 265 (482)
|+|....++++||||||||+++.+++... |.+++.+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~ 59 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVI 59 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEE
Confidence 78888889999999999999999986543 4444443
No 292
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.39 E-value=0.00095 Score=65.70 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=38.6
Q ss_pred EEEEecCC------------cCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHH
Q 011573 357 LIVFTTNY------------IEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKI 411 (482)
Q Consensus 357 iiI~TTN~------------~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i 411 (482)
|+|++||+ |.-+|-.|+. |+ ..|...+.+.++.++|++.....++..+.++.
T Consensus 319 iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A 382 (454)
T KOG2680|consen 319 IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDA 382 (454)
T ss_pred EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHH
Confidence 77888874 5668889998 88 47777777888888998887766655554443
No 293
>PRK13948 shikimate kinase; Provisional
Probab=97.39 E-value=0.00013 Score=67.96 Aligned_cols=35 Identities=26% Similarity=0.145 Sum_probs=32.0
Q ss_pred CcCccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 232 AWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 232 ~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
++++.++|.|++|||||++++.+|..+++++++.|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 34688999999999999999999999999999876
No 294
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.37 E-value=0.00027 Score=71.47 Aligned_cols=58 Identities=29% Similarity=0.359 Sum_probs=43.6
Q ss_pred cChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 204 MEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 204 ~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
++++.++.+.+.+...+... +-..++..++|.|+||||||++++.+|..+|+++++++
T Consensus 108 l~~~~~~~~~~~l~~~~~~~-----~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAG-----RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhh-----hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 45666666666665544321 22455678999999999999999999999999999755
No 295
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.37 E-value=0.00051 Score=65.78 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=25.7
Q ss_pred hCCCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 229 IGRAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 229 ~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
-|++...-+.|+||||+|||+++..+|...
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 367777779999999999999999998653
No 296
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.37 E-value=0.00092 Score=60.29 Aligned_cols=25 Identities=32% Similarity=0.596 Sum_probs=22.4
Q ss_pred CccccccCCCCchHHHHHHHHHHHh
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
..-+.+.||||+|||+++.-+|+.|
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3468899999999999999999887
No 297
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.37 E-value=0.00012 Score=67.77 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=25.6
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
+++.||||+|||++++.||..+|+..+..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 57899999999999999999999766553
No 298
>PRK14531 adenylate kinase; Provisional
Probab=97.36 E-value=0.00013 Score=67.87 Aligned_cols=32 Identities=34% Similarity=0.572 Sum_probs=27.9
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
++-+++.||||+|||++++.+|..+|++.+..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 34589999999999999999999999887653
No 299
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.36 E-value=0.00048 Score=77.79 Aligned_cols=62 Identities=18% Similarity=0.449 Sum_probs=40.0
Q ss_pred ccccccCCCCchHHHHHHHHHHHh-----CCce----------eecccccccCh--------------HHHHHHHHhcCC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL-----GYDL----------YDLELTAVKDN--------------TELRKLLIETSS 285 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l-----~~~i----------~~l~l~~~~~~--------------~~L~~l~~~~~~ 285 (482)
+.++|.||.|+|||++.+.++... |+++ ++--...+.++ ..+..++..+..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~ 402 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTE 402 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence 678999999999999999998762 3221 11001111111 223445555668
Q ss_pred CeEEEEeCCcc
Q 011573 286 KSIIVIEDIDC 296 (482)
Q Consensus 286 ~sIl~iDdiD~ 296 (482)
+++|+|||+-.
T Consensus 403 ~sLvLlDE~g~ 413 (771)
T TIGR01069 403 NSLVLFDELGA 413 (771)
T ss_pred CcEEEecCCCC
Confidence 99999999776
No 300
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.34 E-value=0.0007 Score=64.74 Aligned_cols=62 Identities=19% Similarity=0.271 Sum_probs=40.1
Q ss_pred ccccccCCCCchHHHHHHHHHH-----HhCCceee---------cccccccC--------------hHHHHHHHHhcCCC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMAN-----LLGYDLYD---------LELTAVKD--------------NTELRKLLIETSSK 286 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~-----~l~~~i~~---------l~l~~~~~--------------~~~L~~l~~~~~~~ 286 (482)
|.++|.||.|+|||++.+.++. ..|..+.. -....+.. -..+..++..+..+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 7799999999999999999983 23432211 11111111 12344445556789
Q ss_pred eEEEEeCCcc
Q 011573 287 SIIVIEDIDC 296 (482)
Q Consensus 287 sIl~iDdiD~ 296 (482)
++++|||+-.
T Consensus 110 slvllDE~~~ 119 (213)
T cd03281 110 SLVLIDEFGK 119 (213)
T ss_pred cEEEeccccC
Confidence 9999999876
No 301
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.34 E-value=0.00013 Score=64.69 Aligned_cols=32 Identities=34% Similarity=0.641 Sum_probs=29.1
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
+..+|+.|-||||||+++..+|..++++.+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 45799999999999999999999999998764
No 302
>PRK06217 hypothetical protein; Validated
Probab=97.34 E-value=0.00014 Score=67.78 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=28.0
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
-++|.|+||+||||++++||..+|+++++++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 3789999999999999999999999987654
No 303
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.34 E-value=0.00014 Score=64.42 Aligned_cols=30 Identities=37% Similarity=0.565 Sum_probs=27.9
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
+.+.||||||||++++.+|..++++++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 578999999999999999999999998876
No 304
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.34 E-value=0.0016 Score=61.41 Aligned_cols=35 Identities=43% Similarity=0.644 Sum_probs=25.9
Q ss_pred CccccccCCCCchHHHHHHHHHHHh---CCceeecccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELT 268 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~ 268 (482)
.+-.++.||||||||+++++++..+ +..++.+..+
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 3567889999999999999988766 5666665444
No 305
>PRK14532 adenylate kinase; Provisional
Probab=97.33 E-value=0.00013 Score=67.90 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=26.8
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
.++|.||||+|||++++.||..+|+..++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 378999999999999999999999887654
No 306
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.33 E-value=0.0011 Score=58.54 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=24.1
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGY 260 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~ 260 (482)
..-++|.|+.|+|||++++++++.++.
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 456889999999999999999999864
No 307
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.32 E-value=0.00014 Score=65.16 Aligned_cols=28 Identities=39% Similarity=0.562 Sum_probs=24.9
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
++|.||||+|||++++.++..++..+++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 5789999999999999999998876654
No 308
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.32 E-value=0.00066 Score=68.69 Aligned_cols=69 Identities=17% Similarity=0.295 Sum_probs=43.4
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeeccccc----------------c-----cChHHHHHHH---Hh
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTA----------------V-----KDNTELRKLL---IE 282 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~----------------~-----~~~~~L~~l~---~~ 282 (482)
|+|..+-++++||||||||+|+..++... +..+..++... + .+..+...++ ..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 67777789999999999999988765543 44444333221 1 1111111222 22
Q ss_pred cCCCeEEEEeCCcccc
Q 011573 283 TSSKSIIVIEDIDCSL 298 (482)
Q Consensus 283 ~~~~sIl~iDdiD~~~ 298 (482)
.....+||||-+-++.
T Consensus 131 ~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 131 SGAVDIIVVDSVAALV 146 (321)
T ss_pred ccCCcEEEEcchhhhc
Confidence 3467899999999875
No 309
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.32 E-value=0.00031 Score=77.31 Aligned_cols=52 Identities=27% Similarity=0.331 Sum_probs=41.9
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY 260 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~ 260 (482)
-+|..|+.+++.++.++.|...+.. ++.+||+||||||||++++++|..+..
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 3578899999998888876543321 358999999999999999999998753
No 310
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.32 E-value=0.00083 Score=71.97 Aligned_cols=163 Identities=20% Similarity=0.276 Sum_probs=96.7
Q ss_pred ccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcC--ccccccCCCCchHHHHHHHHHHHhCCceeeccccc----c--
Q 011573 199 FQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWK--RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTA----V-- 270 (482)
Q Consensus 199 ~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~--rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~----~-- 270 (482)
|-++.|.+.+|..|+-.+ +..-..+..-|.+.+ -.+++.|.||||||-+.++.++.+-..+|..--.+ +
T Consensus 344 ~PsIyGhe~VK~GilL~L---fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTa 420 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSL---FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTA 420 (764)
T ss_pred CccccchHHHHhhHHHHH---hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceE
Confidence 566778888888775322 222222222233332 23899999999999999999999988888642111 1
Q ss_pred --cChHHHHHHHHhc-----CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHh
Q 011573 271 --KDNTELRKLLIET-----SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLN 343 (482)
Q Consensus 271 --~~~~~L~~l~~~~-----~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 343 (482)
..++.-.....++ ....|-.|||+|.+= .+ ..-.++.
T Consensus 421 aVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd----~~--------------------------------dqvAihE 464 (764)
T KOG0480|consen 421 AVVKDEESGDFTIEAGALMLADNGICCIDEFDKMD----VK--------------------------------DQVAIHE 464 (764)
T ss_pred EEEecCCCCceeeecCcEEEccCceEEechhcccC----hH--------------------------------hHHHHHH
Confidence 0011111111122 367899999999851 11 1122444
Q ss_pred hhcccc-c--CCC------CceEEEEecCCcC-------------cCCHhhhcCCCeeeE-EEccCCCHHHHHHHHHHhc
Q 011573 344 FIDGLW-S--ACG------GERLIVFTTNYIE-------------KLDPALIRKGRMDKH-IELSHCSYEAFKVLAKNYL 400 (482)
Q Consensus 344 ~ldg~~-s--~~~------~~~iiI~TTN~~~-------------~LD~aL~RpGR~d~~-I~~~~p~~~~~~~l~~~~l 400 (482)
+|+... | ..| -.-=||+++|+.. +++++|+. |||.. |-+.-|++..=..|.++.+
T Consensus 465 AMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIl 542 (764)
T KOG0480|consen 465 AMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHIL 542 (764)
T ss_pred HHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHH
Confidence 444210 0 001 0012677777542 37899999 99955 5678899888888888877
Q ss_pred cc
Q 011573 401 NI 402 (482)
Q Consensus 401 ~~ 402 (482)
..
T Consensus 543 d~ 544 (764)
T KOG0480|consen 543 DL 544 (764)
T ss_pred HH
Confidence 54
No 311
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.32 E-value=0.00058 Score=65.81 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=24.5
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHH
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
|++...-+.|+||||||||+++..+|..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6777777899999999999999999754
No 312
>PRK13946 shikimate kinase; Provisional
Probab=97.32 E-value=0.00016 Score=67.47 Aligned_cols=34 Identities=38% Similarity=0.542 Sum_probs=31.2
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeeccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLEL 267 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l 267 (482)
++.++|.|+||||||++++.+|..+|+++++.+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 4679999999999999999999999999998763
No 313
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.31 E-value=0.00033 Score=64.54 Aligned_cols=63 Identities=17% Similarity=0.260 Sum_probs=44.8
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeecccccccChH-----------------------HHHHHHHh-cCCCeEEEE
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNT-----------------------ELRKLLIE-TSSKSIIVI 291 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~-----------------------~L~~l~~~-~~~~sIl~i 291 (482)
-+|+.||||+|||+++..+|..++.+++.+......+.+ .|..++.. .+.+.+++|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlI 82 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLV 82 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEe
Confidence 378999999999999999999998877766554443221 24444544 345667888
Q ss_pred eCCcccc
Q 011573 292 EDIDCSL 298 (482)
Q Consensus 292 DdiD~~~ 298 (482)
|-+-.++
T Consensus 83 D~Lt~~~ 89 (170)
T PRK05800 83 DCLTTWV 89 (170)
T ss_pred hhHHHHH
Confidence 8777654
No 314
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.31 E-value=0.00015 Score=65.88 Aligned_cols=28 Identities=39% Similarity=0.723 Sum_probs=24.5
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
++|.||||||||++++++++.++..+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999866653
No 315
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.31 E-value=0.0016 Score=65.60 Aligned_cols=98 Identities=13% Similarity=0.234 Sum_probs=74.0
Q ss_pred eeeeccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeec
Q 011573 189 VHVVFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDL 265 (482)
Q Consensus 189 ~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l 265 (482)
..+.+.+-..|+.+++.....+.++.....+.-- --.+|+.|..||||-.+|+|--... ..|++.+
T Consensus 193 ~~~~~~~~~~F~~~v~~S~~mk~~v~qA~k~Aml-----------DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlal 261 (511)
T COG3283 193 QNVAAQDVSGFEQIVAVSPKMKHVVEQAQKLAML-----------DAPLLITGETGTGKDLLAKACHLASPRHSKPFLAL 261 (511)
T ss_pred hhcccccccchHHHhhccHHHHHHHHHHHHhhcc-----------CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEe
Confidence 3455667788999999988888887776655422 3468999999999999999854433 6799999
Q ss_pred ccccccChHHHHHHHHhcC------------CCeEEEEeCCccc
Q 011573 266 ELTAVKDNTELRKLLIETS------------SKSIIVIEDIDCS 297 (482)
Q Consensus 266 ~l~~~~~~~~L~~l~~~~~------------~~sIl~iDdiD~~ 297 (482)
+|.++-.+..=.++|..++ +..-+++|+|-.+
T Consensus 262 NCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEm 305 (511)
T COG3283 262 NCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEM 305 (511)
T ss_pred ecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhc
Confidence 9999966655566666553 4578899998875
No 316
>PF14516 AAA_35: AAA-like domain
Probab=97.30 E-value=0.0024 Score=65.30 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=30.2
Q ss_pred CccccccCCCCchHHHHHHHHHHHh---CCceeecccccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAV 270 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~ 270 (482)
..-+.++||..+||||+...+.+.+ |+..+.+++..+
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~ 70 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQL 70 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 3456789999999999999988766 777777877765
No 317
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.27 E-value=0.00084 Score=67.03 Aligned_cols=59 Identities=32% Similarity=0.460 Sum_probs=40.6
Q ss_pred ccccccCCCCchHHHHHHHHHHHh----C-Cceeecccccc----------------------cChHHHHHHHHhcCCCe
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL----G-YDLYDLELTAV----------------------KDNTELRKLLIETSSKS 287 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l----~-~~i~~l~l~~~----------------------~~~~~L~~l~~~~~~~s 287 (482)
+-++|.||+|+|||+++..+|.++ + ..+..+++... .+...+...+......-
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~d 274 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLRDKD 274 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHccCCC
Confidence 458899999999999999999876 3 55555544432 22344555565555567
Q ss_pred EEEEeC
Q 011573 288 IIVIED 293 (482)
Q Consensus 288 Il~iDd 293 (482)
+||||.
T Consensus 275 ~vliDt 280 (282)
T TIGR03499 275 LILIDT 280 (282)
T ss_pred EEEEeC
Confidence 777775
No 318
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.27 E-value=0.00074 Score=77.95 Aligned_cols=138 Identities=18% Similarity=0.225 Sum_probs=88.4
Q ss_pred cCccccccCCCCchHHHH-HHHHHHHhCCceeecccccccC-hHHHHHHHHhc------------C----CCeEEEEeCC
Q 011573 233 WKRGYLLYGPPGTGKSTM-IAAMANLLGYDLYDLELTAVKD-NTELRKLLIET------------S----SKSIIVIEDI 294 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl-~~aiA~~l~~~i~~l~l~~~~~-~~~L~~l~~~~------------~----~~sIl~iDdi 294 (482)
-.|+|+++||||+|||++ .-++-+++-++++.++.+.-++ .+.|..|=..+ | ..-||+.|||
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDeI 1572 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDEI 1572 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeecc
Confidence 369999999999999984 6688889999999999887654 44555554443 1 2368999999
Q ss_pred cccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCC------CceEEEEecCCcCcC
Q 011573 295 DCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACG------GERLIVFTTNYIEKL 368 (482)
Q Consensus 295 D~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~------~~~iiI~TTN~~~~L 368 (482)
. + + -+.. ......-.-+..|+ .=.|+|+... .++++.+++|.+...
T Consensus 1573 n-L-p-~~~~------------------------y~~~~vI~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~ 1624 (3164)
T COG5245 1573 N-L-P-YGFE------------------------YYPPTVIVFLRPLV-ERQGFWSSIAVSWVTICGIILYGACNPGTDE 1624 (3164)
T ss_pred C-C-c-cccc------------------------cCCCceEEeeHHHH-HhcccccchhhhHhhhcceEEEccCCCCCCc
Confidence 9 2 1 0100 00010111111122 2246665422 337888899987542
Q ss_pred -----CHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 369 -----DPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 369 -----D~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
+..++| | .+.|...||......+|...+|.
T Consensus 1625 gRv~~~eRf~r--~-~v~vf~~ype~~SL~~Iyea~l~ 1659 (3164)
T COG5245 1625 GRVKYYERFIR--K-PVFVFCCYPELASLRNIYEAVLM 1659 (3164)
T ss_pred ccCccHHHHhc--C-ceEEEecCcchhhHHHHHHHHHH
Confidence 355665 3 35788999999988888887765
No 319
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.26 E-value=0.0008 Score=68.16 Aligned_cols=69 Identities=16% Similarity=0.296 Sum_probs=44.6
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeeccccc----------------c-----cChHHHHHHH---Hh
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTA----------------V-----KDNTELRKLL---IE 282 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~----------------~-----~~~~~L~~l~---~~ 282 (482)
|+|..+-+++|||||||||+|+..+|... +..+..++... + .+..++..++ ..
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 67777779999999999999999876543 44444443321 1 1122222222 22
Q ss_pred cCCCeEEEEeCCcccc
Q 011573 283 TSSKSIIVIEDIDCSL 298 (482)
Q Consensus 283 ~~~~sIl~iDdiD~~~ 298 (482)
.....+||||-+-+++
T Consensus 131 s~~~~lIVIDSvaal~ 146 (325)
T cd00983 131 SGAVDLIVVDSVAALV 146 (325)
T ss_pred ccCCCEEEEcchHhhc
Confidence 3467899999999875
No 320
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.26 E-value=0.00019 Score=66.99 Aligned_cols=29 Identities=38% Similarity=0.620 Sum_probs=26.3
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
++|.||||+|||++++.||..+|+.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999999887654
No 321
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.26 E-value=0.00021 Score=65.95 Aligned_cols=34 Identities=41% Similarity=0.666 Sum_probs=30.4
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeeccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLEL 267 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l 267 (482)
++.++|.||+|+|||++++.+|+.+++++++.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4568999999999999999999999999987654
No 322
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.0057 Score=59.06 Aligned_cols=125 Identities=12% Similarity=0.061 Sum_probs=91.6
Q ss_pred CccccccCCCC-chHHHHHHHHHHHhC---------Cceeecccc-------cccChHHHHHHHHhc---C---CCeEEE
Q 011573 234 KRGYLLYGPPG-TGKSTMIAAMANLLG---------YDLYDLELT-------AVKDNTELRKLLIET---S---SKSIIV 290 (482)
Q Consensus 234 ~rg~LL~GPpG-tGKTsl~~aiA~~l~---------~~i~~l~l~-------~~~~~~~L~~l~~~~---~---~~sIl~ 290 (482)
...|||.|..+ +||..++.-++..+. -+++.+.-. ..-+-+.+|++.... + ..-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 45899999998 999999888887762 344544322 112345566655443 2 457999
Q ss_pred EeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCH
Q 011573 291 IEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDP 370 (482)
Q Consensus 291 iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~ 370 (482)
|+++|.+- ....+.||..++.- +.+.++|++|..++.|.|
T Consensus 95 I~~ae~mt------------------------------------~~AANALLKtLEEP----P~~t~fILit~~~~~LLp 134 (263)
T PRK06581 95 IYSAELMN------------------------------------LNAANSCLKILEDA----PKNSYIFLITSRAASIIS 134 (263)
T ss_pred EechHHhC------------------------------------HHHHHHHHHhhcCC----CCCeEEEEEeCChhhCch
Confidence 99999862 33557799998874 456889999999999999
Q ss_pred hhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 371 ALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 371 aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
.++. |+- ++.|..|....-..+...++.
T Consensus 135 TIrS--RCq-~i~~~~p~~~~~~e~~~~~~~ 162 (263)
T PRK06581 135 TIRS--RCF-KINVRSSILHAYNELYSQFIQ 162 (263)
T ss_pred hHhh--ceE-EEeCCCCCHHHHHHHHHHhcc
Confidence 9999 994 899999988777777666654
No 323
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.0002 Score=64.51 Aligned_cols=28 Identities=36% Similarity=0.615 Sum_probs=25.7
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
+-+.|||||||||+++-||.++|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 4578999999999999999999999986
No 324
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.23 E-value=0.00014 Score=66.94 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=25.9
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCc---eeecccccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYD---LYDLELTAV 270 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~---i~~l~l~~~ 270 (482)
++.++|+||||+|||+++++++..+..+ ++.+++...
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5789999999999999999998877443 666666655
No 325
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.22 E-value=0.00072 Score=68.17 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=25.8
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHhCC
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLLGY 260 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~ 260 (482)
..++++|+.||||-|+|||.|.-..-..+..
T Consensus 61 ~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 61 DHGPVRGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred CCCCCceEEEECCCCccHHHHHHHHHhhCCc
Confidence 3457899999999999999999888776643
No 326
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.21 E-value=0.00025 Score=65.01 Aligned_cols=31 Identities=39% Similarity=0.622 Sum_probs=28.6
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
.++|.|+||||||++++.+|..+|+++++.+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5788999999999999999999999998765
No 327
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.20 E-value=0.0015 Score=63.19 Aligned_cols=27 Identities=30% Similarity=0.277 Sum_probs=22.1
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHH
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMAN 256 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~ 256 (482)
|++...-+++.||||||||+++..++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~ 46 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAY 46 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 567777899999999999999755544
No 328
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.18 E-value=0.0012 Score=62.50 Aligned_cols=63 Identities=17% Similarity=0.360 Sum_probs=42.4
Q ss_pred CccccccCCCCchHHHHHHHHHHH-----hCCcee-------------ecccc-cc--------cChHHHHHHHHhcC--
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL-----LGYDLY-------------DLELT-AV--------KDNTELRKLLIETS-- 284 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~-----l~~~i~-------------~l~l~-~~--------~~~~~L~~l~~~~~-- 284 (482)
.+-++|.||+|+|||++.+.|+.. .|.++- .+... .+ ..-.++..++....
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKG 104 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCC
Confidence 367899999999999999999853 344331 00000 00 01144677777777
Q ss_pred CCeEEEEeCCcc
Q 011573 285 SKSIIVIEDIDC 296 (482)
Q Consensus 285 ~~sIl~iDdiD~ 296 (482)
.|.+|++||.-.
T Consensus 105 ~p~llllDEp~~ 116 (199)
T cd03283 105 EPVLFLLDEIFK 116 (199)
T ss_pred CCeEEEEecccC
Confidence 899999999654
No 329
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.15 E-value=0.00064 Score=67.19 Aligned_cols=91 Identities=23% Similarity=0.433 Sum_probs=55.7
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc---eeecc-----
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD---LYDLE----- 266 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~---i~~l~----- 266 (482)
.+.+++++...+...+.+.+.+...++. +..+|+.||+|+|||++.++++.++... ++.++
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~~-----------~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVRG-----------RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHHT-----------TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccccHhhccCchhhHHHHHHHHhhcccc-----------ceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 3457888887766665555444433322 5789999999999999999999988433 33322
Q ss_pred -ccc-----c---cChHHHHHHHHhc--CCCeEEEEeCCcc
Q 011573 267 -LTA-----V---KDNTELRKLLIET--SSKSIIVIEDIDC 296 (482)
Q Consensus 267 -l~~-----~---~~~~~L~~l~~~~--~~~sIl~iDdiD~ 296 (482)
+.. + .....+.+++..+ ..|.+|+|.||-.
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 110 0 1233455555554 4688999999764
No 330
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.15 E-value=0.00045 Score=71.32 Aligned_cols=55 Identities=24% Similarity=0.469 Sum_probs=42.8
Q ss_pred CceeeeccCC--CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhC
Q 011573 187 NWVHVVFEHP--ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 187 ~w~~~~~~~p--~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.|.-...++- .++++-.+++.+++++.+. .+|+|+.||||.|||++|+|+|..+.
T Consensus 232 ~~EITavRPvvk~~ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 232 RWEITAVRPVVKLSLEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred ceEEEEEeeeEEechhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhHHHHHHHHHHH
Confidence 4654444333 4688888899888887532 37999999999999999999999884
No 331
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.14 E-value=0.0007 Score=74.44 Aligned_cols=61 Identities=28% Similarity=0.421 Sum_probs=40.4
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeecc-------cccc-cChHHHHHHHHhc-----CCCeEEEEeCCccc
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDLE-------LTAV-KDNTELRKLLIET-----SSKSIIVIEDIDCS 297 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~-------l~~~-~~~~~L~~l~~~~-----~~~sIl~iDdiD~~ 297 (482)
+||.|.||||||.|.+.+++.+-..+|.-- |+.. ..+....+...++ ..++|.+|||+|.+
T Consensus 322 ILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 322 ILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM 395 (682)
T ss_pred EEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC
Confidence 899999999999999999999877777421 1110 0011011111122 36899999999985
No 332
>PRK14530 adenylate kinase; Provisional
Probab=97.13 E-value=0.00032 Score=67.03 Aligned_cols=30 Identities=33% Similarity=0.533 Sum_probs=27.0
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
.++|.||||+||||+++.||..++++.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 588999999999999999999999887743
No 333
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.12 E-value=0.00033 Score=66.62 Aligned_cols=22 Identities=50% Similarity=0.869 Sum_probs=18.3
Q ss_pred ccccCCCCchHHHHHHHHHHHh
Q 011573 237 YLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7899999999998888777776
No 334
>PRK02496 adk adenylate kinase; Provisional
Probab=97.11 E-value=0.00032 Score=65.13 Aligned_cols=29 Identities=31% Similarity=0.540 Sum_probs=26.3
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
+++.||||+|||++++.||..++++.+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 78999999999999999999999887653
No 335
>PRK14528 adenylate kinase; Provisional
Probab=97.11 E-value=0.00035 Score=65.33 Aligned_cols=30 Identities=27% Similarity=0.500 Sum_probs=26.8
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
.+++.||||+|||++++.+|..+|++.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 478999999999999999999999887653
No 336
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.10 E-value=0.00035 Score=67.57 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=27.2
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
-++|.||||+|||++++.+|..+|++.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999999999887764
No 337
>PRK06762 hypothetical protein; Provisional
Probab=97.10 E-value=0.00037 Score=63.53 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=26.5
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
+-++|.|+||+|||++++.++..++..++.++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 46789999999999999999999965555443
No 338
>PRK05973 replicative DNA helicase; Provisional
Probab=97.10 E-value=0.0016 Score=63.10 Aligned_cols=37 Identities=22% Similarity=0.046 Sum_probs=28.5
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLE 266 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~ 266 (482)
|+++..-+|+.|+||+|||+++..+|... |.+++.++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 66777779999999999999998876644 65554443
No 339
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.09 E-value=0.00035 Score=64.74 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=26.2
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
-+++.||||+||||+++.+|..+|+..+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 578899999999999999999998776543
No 340
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.00031 Score=63.98 Aligned_cols=29 Identities=34% Similarity=0.685 Sum_probs=26.2
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
+++.|.|||||||+++.++ .+|++++.++
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 6789999999999999999 9999988653
No 341
>PRK06547 hypothetical protein; Provisional
Probab=97.08 E-value=0.0004 Score=64.18 Aligned_cols=34 Identities=32% Similarity=0.500 Sum_probs=29.3
Q ss_pred cCccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
.+.-+++.||||||||++++.+|..++.+++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3567889999999999999999999988877554
No 342
>PLN02199 shikimate kinase
Probab=97.05 E-value=0.00086 Score=66.71 Aligned_cols=33 Identities=36% Similarity=0.660 Sum_probs=30.6
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
.+.++|.|++|+|||++++.+|+.+|+++++.|
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 368999999999999999999999999999865
No 343
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.05 E-value=0.00038 Score=64.20 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=27.0
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
+-++|.||||+||||++++++..++.+++.+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~ 33 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHF 33 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCcccc
Confidence 4688999999999999999999998776544
No 344
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.05 E-value=0.0083 Score=60.62 Aligned_cols=30 Identities=30% Similarity=0.286 Sum_probs=25.2
Q ss_pred CcCccccccCCCCchHHHHHHHHHHHhCCc
Q 011573 232 AWKRGYLLYGPPGTGKSTMIAAMANLLGYD 261 (482)
Q Consensus 232 ~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~ 261 (482)
..+..+-|+||=|+|||++++.+-.++.-.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 456788999999999999999998777443
No 345
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.04 E-value=0.0017 Score=68.96 Aligned_cols=69 Identities=26% Similarity=0.347 Sum_probs=45.7
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeeccccccc--------------------ChHHHHHHHHhc--C
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVK--------------------DNTELRKLLIET--S 284 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~--------------------~~~~L~~l~~~~--~ 284 (482)
|++...-+||+||||+|||+|+..+|... +.+++.++...-. ....+..++... .
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 67777779999999999999999998765 5565555432210 011122222222 3
Q ss_pred CCeEEEEeCCcccc
Q 011573 285 SKSIIVIEDIDCSL 298 (482)
Q Consensus 285 ~~sIl~iDdiD~~~ 298 (482)
.+.+|+||.|..++
T Consensus 156 ~~~lVVIDSIq~l~ 169 (446)
T PRK11823 156 KPDLVVIDSIQTMY 169 (446)
T ss_pred CCCEEEEechhhhc
Confidence 67899999998764
No 346
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.03 E-value=0.0012 Score=65.17 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=31.2
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELT 268 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~ 268 (482)
|+|...-+|++||||||||+++..+|... |.++..+++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 67777889999999999999999876643 5676666664
No 347
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=97.00 E-value=0.0046 Score=62.70 Aligned_cols=138 Identities=22% Similarity=0.293 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHHHHHHhcCCCeE
Q 011573 209 KKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSI 288 (482)
Q Consensus 209 k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~~~~sI 288 (482)
.+.|.+.+.....+ +|-+|.+||-||-.|||||+|+|+-+.+|.....+++.. ++|.--+.-+-..-.
T Consensus 138 ~~~i~~iL~~lv~N--------~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~----dkl~FELG~AiDQfm 205 (417)
T PF06431_consen 138 DDVILEILKCLVEN--------IPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFM 205 (417)
T ss_dssp HHHHHHHHHHHHHT--------BTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-T----TTHHHHHCCCTT-SE
T ss_pred HHHHHHHHHHHhcC--------CCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCCh----hhcchhhheeeceEE
Confidence 44444555444443 577899999999999999999999999988877777653 345544555567788
Q ss_pred EEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccC-----CCCce-----EE
Q 011573 289 IVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSA-----CGGER-----LI 358 (482)
Q Consensus 289 l~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~-----~~~~~-----ii 358 (482)
+||||+-- +.... ..-..+..-..|..|-..|||-..- ....+ --
T Consensus 206 VvFEDVKG------q~~~~-------------------~~Lp~G~G~~NLDNLRD~LDG~V~VNLErKH~NK~sQiFPPg 260 (417)
T PF06431_consen 206 VVFEDVKG------QPSDN-------------------KDLPPGQGMNNLDNLRDYLDGAVKVNLERKHQNKRSQIFPPG 260 (417)
T ss_dssp EEEEEE--------SSTTT-------------------TT----SHHHHHHTTHHHHH-SS-EEEECSSSEEEEE----E
T ss_pred EEEEecCC------CcCCC-------------------CCCCCCCCcccchhhhhhccCceeechhhhhcccccccCCCc
Confidence 99998653 21100 0011233455667777888885310 00111 25
Q ss_pred EEecCCcCcCCHhhhcCCCeeeEEEccC
Q 011573 359 VFTTNYIEKLDPALIRKGRMDKHIELSH 386 (482)
Q Consensus 359 I~TTN~~~~LD~aL~RpGR~d~~I~~~~ 386 (482)
|+|.|.. .||..+.- ||-..+.|..
T Consensus 261 IvTmNeY-~iP~Tv~v--Rf~~~~~F~~ 285 (417)
T PF06431_consen 261 IVTMNEY-KIPQTVKV--RFCKVLDFRP 285 (417)
T ss_dssp EEEESS--B--HHHHT--TEEEEEE---
T ss_pred eEeeccc-cCCcceee--eeEeeEeccc
Confidence 7788874 67888888 9998888854
No 348
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.99 E-value=0.0073 Score=63.77 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=26.6
Q ss_pred CccccccCCCCchHHHHHHHHHHHh-----CCceeeccccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL-----GYDLYDLELTA 269 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l-----~~~i~~l~l~~ 269 (482)
++-++|.||+|+|||+++..||..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 3468899999999999999998765 34555555443
No 349
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.0011 Score=59.85 Aligned_cols=26 Identities=46% Similarity=0.653 Sum_probs=22.9
Q ss_pred CccccccCCCCchHHHHHHHHHHHhC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
..-+.|.||+|+|||+|+++|++.+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35688999999999999999999774
No 350
>PLN02200 adenylate kinase family protein
Probab=96.99 E-value=0.00056 Score=66.37 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=26.5
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
+.-+++.||||||||++++.||..+|+..+.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~his 73 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHLS 73 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 3457889999999999999999999976543
No 351
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.99 E-value=0.0017 Score=67.28 Aligned_cols=69 Identities=25% Similarity=0.338 Sum_probs=44.8
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccc--------------------cChHHHHHHHHh--cC
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAV--------------------KDNTELRKLLIE--TS 284 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~--------------------~~~~~L~~l~~~--~~ 284 (482)
|+++..-+||+||||+|||+|+..+|..+ +.+++.++...- .....+..++.. ..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 67777779999999999999999998765 345544432211 011112222222 24
Q ss_pred CCeEEEEeCCcccc
Q 011573 285 SKSIIVIEDIDCSL 298 (482)
Q Consensus 285 ~~sIl~iDdiD~~~ 298 (482)
.+.+|+||.|..++
T Consensus 158 ~~~lVVIDSIq~l~ 171 (372)
T cd01121 158 KPDLVIIDSIQTVY 171 (372)
T ss_pred CCcEEEEcchHHhh
Confidence 78899999998864
No 352
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.98 E-value=0.00048 Score=65.53 Aligned_cols=28 Identities=36% Similarity=0.632 Sum_probs=25.8
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
+++.||||+|||++++.||..+|+..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 6899999999999999999999987765
No 353
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.98 E-value=0.00052 Score=65.57 Aligned_cols=29 Identities=34% Similarity=0.569 Sum_probs=26.5
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
++++||||+|||++++.||..+|+..+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 78999999999999999999999877764
No 354
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.97 E-value=0.0015 Score=60.12 Aligned_cols=62 Identities=19% Similarity=0.234 Sum_probs=43.6
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeeccccccc-----------------------ChHHHHHHHHhcCCCeEEEEeC
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK-----------------------DNTELRKLLIETSSKSIIVIED 293 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~-----------------------~~~~L~~l~~~~~~~sIl~iDd 293 (482)
+|+.||||+|||++|..+|...+.+++.+...... ....|.+.+.+.+.+.+|+||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 58899999999999999998877676665443321 1234555554444566899988
Q ss_pred Ccccc
Q 011573 294 IDCSL 298 (482)
Q Consensus 294 iD~~~ 298 (482)
+...+
T Consensus 82 lt~~~ 86 (169)
T cd00544 82 LTLWV 86 (169)
T ss_pred HhHHH
Confidence 87764
No 355
>PF13245 AAA_19: Part of AAA domain
Probab=96.96 E-value=0.00077 Score=53.51 Aligned_cols=23 Identities=52% Similarity=0.940 Sum_probs=16.1
Q ss_pred cccccCCCCchHH-HHHHHHHHHh
Q 011573 236 GYLLYGPPGTGKS-TMIAAMANLL 258 (482)
Q Consensus 236 g~LL~GPpGtGKT-sl~~aiA~~l 258 (482)
-+++.|||||||| +++++++..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455999999999 4555555554
No 356
>PRK08233 hypothetical protein; Provisional
Probab=96.95 E-value=0.003 Score=58.12 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.5
Q ss_pred cccccCCCCchHHHHHHHHHHHhC
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
-+.+.|+||+||||+++.||..++
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 466789999999999999999985
No 357
>PRK04296 thymidine kinase; Provisional
Probab=96.95 E-value=0.0061 Score=57.14 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=23.2
Q ss_pred cccccCCCCchHHHHHHHHHHHh---CCceeec
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL---GYDLYDL 265 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l 265 (482)
-.|++||||+|||+++..++..+ +..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 36889999999999998888765 4555544
No 358
>PRK14527 adenylate kinase; Provisional
Probab=96.95 E-value=0.00048 Score=64.49 Aligned_cols=31 Identities=32% Similarity=0.600 Sum_probs=26.9
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
+.-+++.||||+|||++++.+|..+++..+.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 3458999999999999999999999877654
No 359
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.0085 Score=62.08 Aligned_cols=49 Identities=27% Similarity=0.398 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 206 PAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 206 ~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.++++.+.+.+..++..+..+ ...++-++|.||+|+||||++..||..+
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 456666666666655543211 1124678999999999999999999877
No 360
>PRK04182 cytidylate kinase; Provisional
Probab=96.91 E-value=0.00061 Score=62.53 Aligned_cols=28 Identities=36% Similarity=0.646 Sum_probs=26.4
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
++|.|+||||||++++++|..+|+++++
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 6789999999999999999999999886
No 361
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.90 E-value=0.00083 Score=52.17 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.3
Q ss_pred ccccCCCCchHHHHHHHHHHHh
Q 011573 237 YLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l 258 (482)
+.+.|+||+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999997
No 362
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.90 E-value=0.00053 Score=61.58 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=23.3
Q ss_pred ccCCCCchHHHHHHHHHHHhCCceee
Q 011573 239 LYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 239 L~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
+.||||+|||++++.||..+|+..+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 57999999999999999999887655
No 363
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.86 E-value=0.0017 Score=65.93 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=45.8
Q ss_pred cc-ccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-CCceeecccc
Q 011573 199 FQ-TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-GYDLYDLELT 268 (482)
Q Consensus 199 ~~-~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-~~~i~~l~l~ 268 (482)
|+ .+.|.++..++|++.+..-.. .+-.-++-++|.||+|+||||+++.+.+.+ .+++|.+.-+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~-------g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~ 123 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQ-------GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGC 123 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHh-------ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCC
Confidence 55 788988888888765543322 122346778899999999999999999887 4677766433
No 364
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.85 E-value=0.005 Score=59.52 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.6
Q ss_pred cccccCCCCchHHHHHHHHHHHh
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l 258 (482)
-+-|.||+|||||||.+.||+..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36788999999999999999866
No 365
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.85 E-value=0.033 Score=64.32 Aligned_cols=33 Identities=33% Similarity=0.322 Sum_probs=26.6
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeeccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLEL 267 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l 267 (482)
.+-++++||+|.|||+++...+...+ ++..+++
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 35689999999999999999887776 6555544
No 366
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.83 E-value=0.0017 Score=66.97 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=21.1
Q ss_pred ccccCCCCchHHHHHHHHHHHhC
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.|+.||||||||+|++.|++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 78889999999999999999774
No 367
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.83 E-value=0.019 Score=55.71 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=35.3
Q ss_pred ceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 355 ERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 355 ~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
+.-+|+++...-.|||.++. =++..+-+. -+...++.|++++...
T Consensus 128 ~is~i~l~Q~~~~lp~~iR~--n~~y~i~~~-~s~~dl~~i~~~~~~~ 172 (241)
T PF04665_consen 128 NISIIFLSQSYFHLPPNIRS--NIDYFIIFN-NSKRDLENIYRNMNIK 172 (241)
T ss_pred ceEEEEEeeecccCCHHHhh--cceEEEEec-CcHHHHHHHHHhcccc
Confidence 46788888888999999877 788777775 4777888888887543
No 368
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.83 E-value=0.00073 Score=61.45 Aligned_cols=26 Identities=42% Similarity=0.738 Sum_probs=20.7
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCcee
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLY 263 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~ 263 (482)
|.|.|+||||||||+++||.. |++++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 678999999999999999999 87765
No 369
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.82 E-value=0.00057 Score=58.79 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.8
Q ss_pred ccccCCCCchHHHHHHHHHHHh
Q 011573 237 YLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l 258 (482)
++|.|+|||||||+++.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998
No 370
>PRK04040 adenylate kinase; Provisional
Probab=96.82 E-value=0.00081 Score=63.01 Aligned_cols=29 Identities=28% Similarity=0.547 Sum_probs=25.2
Q ss_pred ccccccCCCCchHHHHHHHHHHHh--CCcee
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL--GYDLY 263 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l--~~~i~ 263 (482)
.-++++|+||||||++++.++..+ ++.++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 457899999999999999999999 56554
No 371
>PRK01184 hypothetical protein; Provisional
Probab=96.82 E-value=0.00079 Score=62.47 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=24.8
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
-++|.||||+||||+++ ++.++|+++++.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 46789999999999887 889999888754
No 372
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.80 E-value=0.00084 Score=61.14 Aligned_cols=29 Identities=34% Similarity=0.618 Sum_probs=26.6
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
+.++|+||+|||++++.+|+.+|++++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 67899999999999999999999998764
No 373
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.80 E-value=0.0041 Score=59.87 Aligned_cols=63 Identities=19% Similarity=0.385 Sum_probs=42.4
Q ss_pred CccccccCCCCchHHHHHHHHHH-Hh----CCce---------e-----ecccc-cc-------c-ChHHHHHHHHhcCC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMAN-LL----GYDL---------Y-----DLELT-AV-------K-DNTELRKLLIETSS 285 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~-~l----~~~i---------~-----~l~l~-~~-------~-~~~~L~~l~~~~~~ 285 (482)
.+-++|.||.|+|||++.+.++. .+ |..+ + .+... ++ . .-.++..++..+..
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 110 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTS 110 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCC
Confidence 45689999999999999999987 22 3221 1 01000 11 0 12446677888889
Q ss_pred CeEEEEeCCcc
Q 011573 286 KSIIVIEDIDC 296 (482)
Q Consensus 286 ~sIl~iDdiD~ 296 (482)
+++++|||+..
T Consensus 111 ~sLvllDE~~~ 121 (222)
T cd03287 111 RSLVILDELGR 121 (222)
T ss_pred CeEEEEccCCC
Confidence 99999999875
No 374
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.80 E-value=0.00087 Score=62.26 Aligned_cols=29 Identities=45% Similarity=0.763 Sum_probs=24.5
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
.+++-||||+||||+|+.||+.++++-++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hls 30 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLD 30 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 47889999999999999999996665443
No 375
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.80 E-value=0.0042 Score=61.58 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=23.1
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.++++.||||+|||+|.+++|+.+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5899999999999999999999874
No 376
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.78 E-value=0.0016 Score=64.58 Aligned_cols=61 Identities=25% Similarity=0.396 Sum_probs=33.6
Q ss_pred ccccCCCCchHHHHHHHHHHHh---CCceeecccccc----------cChHHHHHHHHh-----cCCCeEEEEeCCccc
Q 011573 237 YLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAV----------KDNTELRKLLIE-----TSSKSIIVIEDIDCS 297 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~----------~~~~~L~~l~~~-----~~~~sIl~iDdiD~~ 297 (482)
++|+|.||+|||++++.|+.++ +..+..++-..+ ..+..++..+.. .....||++|+.--+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 6899999999999999999986 455555543222 123334433332 245689999997753
No 377
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.78 E-value=0.002 Score=63.25 Aligned_cols=64 Identities=17% Similarity=0.361 Sum_probs=54.0
Q ss_pred CccccccCCCCchHHHHHHHHHH------HhCCceeecccccccChHHHHHHHHhc-----------------CCCeEEE
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMAN------LLGYDLYDLELTAVKDNTELRKLLIET-----------------SSKSIIV 290 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~------~l~~~i~~l~l~~~~~~~~L~~l~~~~-----------------~~~sIl~ 290 (482)
+-.+||.||.|.|||.|++.|-. .+.-+++.++|..+..+..+..+|... .....||
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEe
Confidence 56799999999999999999853 467899999999999888888888653 2457999
Q ss_pred EeCCccc
Q 011573 291 IEDIDCS 297 (482)
Q Consensus 291 iDdiD~~ 297 (482)
+|||-.+
T Consensus 288 ldeigel 294 (531)
T COG4650 288 LDEIGEL 294 (531)
T ss_pred hHhhhhc
Confidence 9999875
No 378
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.77 E-value=0.00084 Score=63.36 Aligned_cols=33 Identities=36% Similarity=0.615 Sum_probs=25.8
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeecccc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLELT 268 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~ 268 (482)
-|+++||+|||||.++-++|+.+|.+++.+|--
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dri 35 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRI 35 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecce
Confidence 378999999999999999999999999876543
No 379
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.77 E-value=0.0017 Score=57.95 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=39.8
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCc---eee---cccccc--cChHHHHHHHH---hcCCCeEEEEeCCcccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYD---LYD---LELTAV--KDNTELRKLLI---ETSSKSIIVIEDIDCSL 298 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~---i~~---l~l~~~--~~~~~L~~l~~---~~~~~sIl~iDdiD~~~ 298 (482)
...+.|.||+|+|||+|+++|++.+... ++. ..+..+ -+....+++.. -+.+|.++++||-..-+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~L 101 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHL 101 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 4568899999999999999999976321 110 000100 12223333322 23589999999977644
No 380
>PRK06696 uridine kinase; Validated
Probab=96.75 E-value=0.0033 Score=60.40 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=31.3
Q ss_pred CccccccCCCCchHHHHHHHHHHHh---CCceeeccccccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVK 271 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~ 271 (482)
+.-+.+.|+||+||||+++.||..+ |.+++.+.+.+..
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4567789999999999999999999 6777776666654
No 381
>PRK14526 adenylate kinase; Provisional
Probab=96.75 E-value=0.001 Score=63.59 Aligned_cols=28 Identities=36% Similarity=0.704 Sum_probs=25.3
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
++|.||||+|||++++.||..++++.+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999999877654
No 382
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.74 E-value=0.027 Score=57.05 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=17.9
Q ss_pred EEEccCCCHHHHHHHHHHhccc
Q 011573 381 HIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 381 ~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
.|+++..+.++.+.++..|...
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~ 279 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADS 279 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHC
Confidence 6788888999999998888653
No 383
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.73 E-value=0.0057 Score=61.65 Aligned_cols=63 Identities=25% Similarity=0.399 Sum_probs=41.7
Q ss_pred CCcCccccccCCCCchHHHHHHHHHHHhCCceee----cccccccChHHHHHHHHhcCCCeEEEEeCCcc
Q 011573 231 RAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYD----LELTAVKDNTELRKLLIETSSKSIIVIEDIDC 296 (482)
Q Consensus 231 ~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~----l~l~~~~~~~~L~~l~~~~~~~sIl~iDdiD~ 296 (482)
.+...-++|+|+.|+|||+++..|...+|-.... +.+.+.... +.-+.....+.+++++|++.
T Consensus 73 ~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~~---~f~~a~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 73 YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEH---RFGLARLEGKRAVIGDEVQK 139 (304)
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccCC---CchhhhhcCCEEEEecCCCC
Confidence 3556778999999999999999999888754321 222222210 11123345678999999875
No 384
>PRK09354 recA recombinase A; Provisional
Probab=96.73 E-value=0.0044 Score=63.39 Aligned_cols=69 Identities=17% Similarity=0.312 Sum_probs=42.8
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeeccccc----------------c-----cChHHHHHH---HHh
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTA----------------V-----KDNTELRKL---LIE 282 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~----------------~-----~~~~~L~~l---~~~ 282 (482)
|+|..+-+++|||||||||+|+..++... |...+.++... + .+......+ +..
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 67777779999999999999998765432 43333333221 1 111111122 222
Q ss_pred cCCCeEEEEeCCcccc
Q 011573 283 TSSKSIIVIEDIDCSL 298 (482)
Q Consensus 283 ~~~~sIl~iDdiD~~~ 298 (482)
.....+||||-|-+++
T Consensus 136 s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 136 SGAVDLIVVDSVAALV 151 (349)
T ss_pred cCCCCEEEEeChhhhc
Confidence 3467899999998875
No 385
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.72 E-value=0.0036 Score=61.85 Aligned_cols=85 Identities=20% Similarity=0.382 Sum_probs=51.4
Q ss_pred CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCcc-ccccCCCCchHHHHHHHHHHHhC---Cceeecc------
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRG-YLLYGPPGTGKSTMIAAMANLLG---YDLYDLE------ 266 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg-~LL~GPpGtGKTsl~~aiA~~l~---~~i~~l~------ 266 (482)
.+++++.+.++..+.+...+ .. ++| +++.||+|+||||+++++..++. ..++.++
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~----~~-----------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLL----EK-----------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHH----hc-----------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 46778888777666553222 11 234 78999999999999999988774 2344331
Q ss_pred cccc-----cC--hHHHHHHHHhc--CCCeEEEEeCCcc
Q 011573 267 LTAV-----KD--NTELRKLLIET--SSKSIIVIEDIDC 296 (482)
Q Consensus 267 l~~~-----~~--~~~L~~l~~~~--~~~sIl~iDdiD~ 296 (482)
+..+ .. ...+..++..+ ..|-+|+|.||..
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 1111 10 11233333332 4789999999864
No 386
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.70 E-value=0.0011 Score=60.37 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.7
Q ss_pred cCccccccCCCCchHHHHHHHHHHHh
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
+..-+.|.||+|+|||+|.+.|++..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568899999999999999999876
No 387
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.70 E-value=0.0029 Score=59.71 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=19.7
Q ss_pred ccccccCCCCchHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMA 255 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA 255 (482)
+.++|.||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 388
>PRK10646 ADP-binding protein; Provisional
Probab=96.69 E-value=0.0094 Score=53.81 Aligned_cols=62 Identities=26% Similarity=0.392 Sum_probs=42.7
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCC--------------------ceeecccccccChHHHHHH-HHh-cCCCeEEEEe
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGY--------------------DLYDLELTAVKDNTELRKL-LIE-TSSKSIIVIE 292 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~--------------------~i~~l~l~~~~~~~~L~~l-~~~-~~~~sIl~iD 292 (482)
.-++|.|+=|+|||++++++|..+|. ++|-+|+-.+.+..++..+ |.+ ...+.|++||
T Consensus 29 ~vi~L~GdLGaGKTtf~rgl~~~Lg~~~~V~SPTFtlv~~Y~~~~~~l~H~DlYRL~~~~el~~lG~~e~~~~~~i~~IE 108 (153)
T PRK10646 29 TVIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPTYTLVEPYTLDNLMVYHFDLYRLADPEELEFMGIRDYFANDAICLVE 108 (153)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCCCCCCCCEeeEEEeeCCCCCEEEEeeccCCCHHHHHHcchHHhhcCCCEEEEE
Confidence 45889999999999999999999864 2444455555555555443 223 2356788887
Q ss_pred CCcc
Q 011573 293 DIDC 296 (482)
Q Consensus 293 diD~ 296 (482)
=-|.
T Consensus 109 W~e~ 112 (153)
T PRK10646 109 WPQQ 112 (153)
T ss_pred CCcc
Confidence 6554
No 389
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.69 E-value=0.0019 Score=56.18 Aligned_cols=64 Identities=33% Similarity=0.388 Sum_probs=43.5
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCC--------------------ceeecccccccChHHHHHH--HHhcCCCeEEEE
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGY--------------------DLYDLELTAVKDNTELRKL--LIETSSKSIIVI 291 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~--------------------~i~~l~l~~~~~~~~L~~l--~~~~~~~sIl~i 291 (482)
..-++|+|+=|+|||++++++|..+|. ++|-+|+-.+.+..++..+ +......+|.+|
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~~I 94 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGICVI 94 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeeccccCCHHHHHHCCchhhhCCCCEEEE
Confidence 456899999999999999999999864 3444555555555554443 233457899999
Q ss_pred eCCccc
Q 011573 292 EDIDCS 297 (482)
Q Consensus 292 DdiD~~ 297 (482)
|=-+.+
T Consensus 95 EW~e~~ 100 (123)
T PF02367_consen 95 EWPERL 100 (123)
T ss_dssp ESGGGG
T ss_pred ECcccc
Confidence 865554
No 390
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.68 E-value=0.0037 Score=61.25 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=23.8
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGY 260 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~ 260 (482)
..-+++.||+|||||++++.+++.+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 345899999999999999999998864
No 391
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.67 E-value=0.0013 Score=59.07 Aligned_cols=29 Identities=41% Similarity=0.597 Sum_probs=24.5
Q ss_pred ccccCCCCchHHHHHHHHHHHh---CCceeec
Q 011573 237 YLLYGPPGTGKSTMIAAMANLL---GYDLYDL 265 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l 265 (482)
+++.|+||+|||++++.++..+ +.+.+.+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i 33 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVL 33 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 5789999999999999999998 5555544
No 392
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.67 E-value=0.007 Score=57.15 Aligned_cols=63 Identities=22% Similarity=0.397 Sum_probs=40.4
Q ss_pred ccccccCCCCchHHHHHHHHHH-H----hCCcee--------------ecccc--------cc-cChHHHHHHHHhcCCC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMAN-L----LGYDLY--------------DLELT--------AV-KDNTELRKLLIETSSK 286 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~-~----l~~~i~--------------~l~l~--------~~-~~~~~L~~l~~~~~~~ 286 (482)
+-++|.||.|+|||++.++|+. . .|..+. .+... .. .....+..++.....|
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~ 109 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR 109 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence 5689999999999999999993 2 232110 11111 00 0123455556666789
Q ss_pred eEEEEeCCccc
Q 011573 287 SIIVIEDIDCS 297 (482)
Q Consensus 287 sIl~iDdiD~~ 297 (482)
.++++||.-.-
T Consensus 110 ~llllDEp~~g 120 (202)
T cd03243 110 SLVLIDELGRG 120 (202)
T ss_pred eEEEEecCCCC
Confidence 99999998763
No 393
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.66 E-value=0.0011 Score=66.34 Aligned_cols=30 Identities=30% Similarity=0.248 Sum_probs=25.6
Q ss_pred ccccccCCCCchHHHHHHHHHHHh-CCceee
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL-GYDLYD 264 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l-~~~i~~ 264 (482)
.-++|.|||||||||+++.++..+ +..+++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 457889999999999999999999 665554
No 394
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.022 Score=59.59 Aligned_cols=62 Identities=21% Similarity=0.337 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhCH-HHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----CCceeeccccc
Q 011573 208 EKKEIIDDLIAFSKSE-DFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----GYDLYDLELTA 269 (482)
Q Consensus 208 ~k~~i~~~l~~fl~~~-~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----~~~i~~l~l~~ 269 (482)
+.+.+.+.+...+.-. ..+...|...+.-++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 196 ~~~~l~~~L~~~l~~~~~~~~~~g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 196 VTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred HHHHHHHHHHHhcccchhhhhhcccCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 4455555555544321 11222222223458899999999999999999754 44454444443
No 395
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.62 E-value=0.0021 Score=60.28 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.5
Q ss_pred ccccCCCCchHHHHHHHHHHHhC
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
++|.|+||+|||++++-+|..|.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 68999999999999999999984
No 396
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.62 E-value=0.0057 Score=58.08 Aligned_cols=63 Identities=22% Similarity=0.324 Sum_probs=40.1
Q ss_pred CccccccCCCCchHHHHHHHHHH-----HhCCceee--------------cccc-ccc--------ChHHHHHHHHhcCC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMAN-----LLGYDLYD--------------LELT-AVK--------DNTELRKLLIETSS 285 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~-----~l~~~i~~--------------l~l~-~~~--------~~~~L~~l~~~~~~ 285 (482)
.+-++|.||.|+|||++.+.++. ++|+.+-. +... ++. .-.++..++..+..
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~ 108 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADG 108 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCC
Confidence 35689999999999999999974 23433211 0111 000 01234555555678
Q ss_pred CeEEEEeCCcc
Q 011573 286 KSIIVIEDIDC 296 (482)
Q Consensus 286 ~sIl~iDdiD~ 296 (482)
++++++||+..
T Consensus 109 ~~lvllDE~~~ 119 (204)
T cd03282 109 DSLVLIDELGR 119 (204)
T ss_pred CcEEEeccccC
Confidence 99999999875
No 397
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.62 E-value=0.0046 Score=65.33 Aligned_cols=61 Identities=20% Similarity=0.218 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccc
Q 011573 207 AEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELT 268 (482)
Q Consensus 207 ~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~ 268 (482)
.+.+.+.+.+...+.......... ..+.-++|+||||+|||+++..+|..+ |..+..+++.
T Consensus 69 ~~~~~v~~~L~~~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 69 HVIKIVYEELVKLLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred HHHHHHHHHHHHHhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 345555555555554321111111 235678999999999999999999887 4555555444
No 398
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.62 E-value=0.0038 Score=63.25 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=23.5
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHH
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMAN 256 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~ 256 (482)
|++...-++++||||||||.|+..+|-
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHH
Confidence 677777789999999999999987763
No 399
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.62 E-value=0.0067 Score=56.53 Aligned_cols=61 Identities=16% Similarity=0.362 Sum_probs=39.5
Q ss_pred ccccCCCCchHHHHHHHHHH-----HhCCce---------e-----eccccc--------c-cChHHHHHHHHhcCCCeE
Q 011573 237 YLLYGPPGTGKSTMIAAMAN-----LLGYDL---------Y-----DLELTA--------V-KDNTELRKLLIETSSKSI 288 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~-----~l~~~i---------~-----~l~l~~--------~-~~~~~L~~l~~~~~~~sI 288 (482)
++|.||.|+|||++.+.++- +.|..+ + .+.+.+ + ..-.++..++..+..|++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 67999999999999999982 234322 1 111111 0 011345566666678999
Q ss_pred EEEeCCccc
Q 011573 289 IVIEDIDCS 297 (482)
Q Consensus 289 l~iDdiD~~ 297 (482)
+++||.-.-
T Consensus 82 lllDEp~~g 90 (185)
T smart00534 82 VLLDELGRG 90 (185)
T ss_pred EEEecCCCC
Confidence 999998763
No 400
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.62 E-value=0.0012 Score=61.61 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=25.5
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
.-+.|.||+|+||||+++.||..++.+++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 357899999999999999999998876544
No 401
>PTZ00035 Rad51 protein; Provisional
Probab=96.60 E-value=0.0059 Score=62.50 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=24.3
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHH
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
|++...-+.++||||||||+|+..+|..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence 6777777899999999999999988754
No 402
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.56 E-value=0.0016 Score=63.65 Aligned_cols=30 Identities=40% Similarity=0.550 Sum_probs=25.1
Q ss_pred ccccCCCCchHHHHHHHHHHHh---CCceeecc
Q 011573 237 YLLYGPPGTGKSTMIAAMANLL---GYDLYDLE 266 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~ 266 (482)
++|.|+||+|||++++++|.++ +.+++.++
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~ 34 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILG 34 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEc
Confidence 5789999999999999999988 45555554
No 403
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.56 E-value=0.006 Score=60.37 Aligned_cols=84 Identities=19% Similarity=0.348 Sum_probs=55.5
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccC----hHHH
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKD----NTEL 276 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~----~~~L 276 (482)
+|++-+++.+-|. .+.+-+.. ++...||.|++||||+|+++..|.-.++.++.+..+.-.+ ...|
T Consensus 9 ~lVlf~~ai~hi~-ri~RvL~~----------~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dL 77 (268)
T PF12780_consen 9 NLVLFDEAIEHIA-RISRVLSQ----------PRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDL 77 (268)
T ss_dssp -----HHHHHHHH-HHHHHHCS----------TTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHH
T ss_pred ceeeHHHHHHHHH-HHHHHHcC----------CCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHH
Confidence 4556666666653 33344433 2355899999999999999999988999999998775432 2457
Q ss_pred HHHHHhcC---CCeEEEEeCCc
Q 011573 277 RKLLIETS---SKSIIVIEDID 295 (482)
Q Consensus 277 ~~l~~~~~---~~sIl~iDdiD 295 (482)
+.++..+. .+++++|+|-+
T Consensus 78 k~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 78 KKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp HHHHHHHHCS-S-EEEEEECCC
T ss_pred HHHHHHHhccCCCeEEEecCcc
Confidence 77776653 68899998854
No 404
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.55 E-value=0.0018 Score=70.52 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=32.0
Q ss_pred CCCcCcc-ccccCCCCchHHHHHHHHHHHhCCceeeccc
Q 011573 230 GRAWKRG-YLLYGPPGTGKSTMIAAMANLLGYDLYDLEL 267 (482)
Q Consensus 230 g~~~~rg-~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l 267 (482)
|+|.+++ ++|.|+||+|||++.+.+|..+|++++++|.
T Consensus 1 ~~~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 1 GKPTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred CCCCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 3444444 7789999999999999999999999998864
No 405
>PLN02674 adenylate kinase
Probab=96.54 E-value=0.0018 Score=63.07 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=27.0
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
...++|.||||+||+|+++.||..+|+..+.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 3558999999999999999999999976654
No 406
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.53 E-value=0.0019 Score=59.74 Aligned_cols=29 Identities=34% Similarity=0.350 Sum_probs=22.2
Q ss_pred ccccCCCCchHHHHHHHHHHHh---CCceeec
Q 011573 237 YLLYGPPGTGKSTMIAAMANLL---GYDLYDL 265 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l 265 (482)
+|++||||||||+++..++.+. |.++..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~ 33 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYV 33 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 6899999999999999876654 4444433
No 407
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.51 E-value=0.0022 Score=63.04 Aligned_cols=50 Identities=24% Similarity=0.227 Sum_probs=36.3
Q ss_pred hCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccChHHHHHHH
Q 011573 229 IGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDNTELRKLL 280 (482)
Q Consensus 229 ~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~~~L~~l~ 280 (482)
-|+|..+-+|++|+||||||+++..++... |.+++.+.+... ...+.+.+
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC--HHHHHHHH
Confidence 467888889999999999999999887654 666776655543 33444443
No 408
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.50 E-value=0.0017 Score=58.06 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=29.9
Q ss_pred CcCccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 232 AWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 232 ~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
|++-.+++.|++|||||+++++++.+|++++++-
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dg 43 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDG 43 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCccccc
Confidence 4555678899999999999999999999998864
No 409
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.50 E-value=0.0024 Score=64.33 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=23.3
Q ss_pred CccccccCCCCchHHHHHHHHHHHh
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
++++|+.||+|+|||++++|+++++
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999886
No 410
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.49 E-value=0.0019 Score=60.97 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.5
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCce
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDL 262 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i 262 (482)
++-+++.|+||+|||++++.+|..++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 34688999999999999999999998754
No 411
>PF13479 AAA_24: AAA domain
Probab=96.46 E-value=0.0017 Score=61.97 Aligned_cols=65 Identities=31% Similarity=0.519 Sum_probs=39.0
Q ss_pred ccccccCCCCchHHHHHHHHHHHh------C---Ccee-ecccccccChHHHHHHHHhc----CCCeEEEEeCCccccc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL------G---YDLY-DLELTAVKDNTELRKLLIET----SSKSIIVIEDIDCSLD 299 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l------~---~~i~-~l~l~~~~~~~~L~~l~~~~----~~~sIl~iDdiD~~~~ 299 (482)
--+|||||||+|||+++..+-+-+ | ++.. ..+.-.+.+-..+.+.+... ..--.||||-++.+..
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~~~ 82 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASLPKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWLED 82 (213)
T ss_pred eEEEEECCCCCCHHHHHHhCCCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHHHH
Confidence 358999999999999999882221 1 1111 11111123445566655432 3447999999998744
No 412
>PHA00350 putative assembly protein
Probab=96.46 E-value=0.0052 Score=63.85 Aligned_cols=61 Identities=15% Similarity=0.231 Sum_probs=37.4
Q ss_pred ccccCCCCchHHHHHHH--HHH--HhCCceeecccccccChHHH---------------------------HHHHHhcCC
Q 011573 237 YLLYGPPGTGKSTMIAA--MAN--LLGYDLYDLELTAVKDNTEL---------------------------RKLLIETSS 285 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~a--iA~--~l~~~i~~l~l~~~~~~~~L---------------------------~~l~~~~~~ 285 (482)
+|++|+||+|||..+-. |-. .-|..++. ++..+. .+.+ ...+.-.+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR~V~T-NI~Gl~-le~i~~~~~~~p~~~~li~i~~~~~~~~~~~~~~~~w~p~ 81 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGRKVIT-NIPGLN-LDVFEKVFGEFPSTARLIRIVDRNLEGFESMNRPFSWRPR 81 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCCEEEE-CCCCCC-HHHHHhhcccCcccceeEEeccccccchhhhccccccCCC
Confidence 68899999999987765 332 33666653 333221 0111 111111356
Q ss_pred CeEEEEeCCccccc
Q 011573 286 KSIIVIEDIDCSLD 299 (482)
Q Consensus 286 ~sIl~iDdiD~~~~ 299 (482)
.++|||||+..+++
T Consensus 82 gaLIViDEaq~~~p 95 (399)
T PHA00350 82 GALYVIDEAQMIFP 95 (399)
T ss_pred CCEEEEECchhhcC
Confidence 79999999999874
No 413
>PRK14529 adenylate kinase; Provisional
Probab=96.46 E-value=0.0018 Score=62.31 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=25.6
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
++|.||||+|||++++.||..++++.++
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is 30 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIE 30 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcc
Confidence 7889999999999999999999987663
No 414
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.44 E-value=0.0039 Score=57.89 Aligned_cols=65 Identities=18% Similarity=0.172 Sum_probs=38.6
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCc---eee--cccccc-----cChHHHHHHH---HhcCCCeEEEEeCCcccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYD---LYD--LELTAV-----KDNTELRKLL---IETSSKSIIVIEDIDCSL 298 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~---i~~--l~l~~~-----~~~~~L~~l~---~~~~~~sIl~iDdiD~~~ 298 (482)
..-+.|.||.|+|||||++.|++.+... +.. .++..+ -+...-+++- .-+..|.++++||--.-+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 3457899999999999999999976321 110 011111 1111222221 123589999999977644
No 415
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.43 E-value=0.0022 Score=59.49 Aligned_cols=29 Identities=34% Similarity=0.472 Sum_probs=25.9
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
+.|+|+||+|||++++.+++ +|+++++.+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 57899999999999999999 898887765
No 416
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.39 E-value=0.0076 Score=56.94 Aligned_cols=27 Identities=33% Similarity=0.353 Sum_probs=23.0
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHH
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMAN 256 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~ 256 (482)
|+|.+-=+|+.|+.|||||-|++.+|-
T Consensus 24 GiP~GsL~lIEGd~~tGKSvLsqr~~Y 50 (235)
T COG2874 24 GIPVGSLILIEGDNGTGKSVLSQRFAY 50 (235)
T ss_pred CCccCeEEEEECCCCccHHHHHHHHHH
Confidence 466666688999999999999999874
No 417
>PRK13764 ATPase; Provisional
Probab=96.39 E-value=0.0027 Score=69.31 Aligned_cols=26 Identities=42% Similarity=0.747 Sum_probs=24.1
Q ss_pred CccccccCCCCchHHHHHHHHHHHhC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
++++|++||||+||||+++|++.++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999999884
No 418
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.38 E-value=0.032 Score=65.95 Aligned_cols=126 Identities=18% Similarity=0.213 Sum_probs=81.8
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHH------------H----HHHHHhcCCCeEEEEeCCccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTE------------L----RKLLIETSSKSIIVIEDIDCS 297 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~------------L----~~l~~~~~~~sIl~iDdiD~~ 297 (482)
.-.+|+.||..+||||++..+|.+.|-.++.++-..-.+..+ | .-+....++.--|++||+.-+
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLA 967 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLA 967 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccC
Confidence 357999999999999999999999999999987554322111 1 123334456778999998863
Q ss_pred ccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcc-----------cccCCCCceEEEEecCCcC
Q 011573 298 LDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDG-----------LWSACGGERLIVFTTNYIE 366 (482)
Q Consensus 298 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-----------~~s~~~~~~iiI~TTN~~~ 366 (482)
. ...+..|-..+|. +. .+..+..+++|-|.|.
T Consensus 968 p------------------------------------TDVLEaLNRLLDDNRelfIPETqevV-~PHp~F~lFATQNppg 1010 (4600)
T COG5271 968 P------------------------------------TDVLEALNRLLDDNRELFIPETQEVV-VPHPNFRLFATQNPPG 1010 (4600)
T ss_pred c------------------------------------HHHHHHHHHhhccccceecCCcceee-ccCCCeeEEeecCCCc
Confidence 1 1122222223332 11 1233456777778764
Q ss_pred ------cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHh
Q 011573 367 ------KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNY 399 (482)
Q Consensus 367 ------~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~ 399 (482)
-|..|++. || ..++|.--..++...|+..-
T Consensus 1011 ~YgGRK~LSrAFRN--RF-lE~hFddipedEle~ILh~r 1046 (4600)
T COG5271 1011 GYGGRKGLSRAFRN--RF-LEMHFDDIPEDELEEILHGR 1046 (4600)
T ss_pred cccchHHHHHHHHh--hh-HhhhcccCcHHHHHHHHhcc
Confidence 37889998 88 47777766677777776544
No 419
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.37 E-value=0.008 Score=66.15 Aligned_cols=28 Identities=29% Similarity=0.539 Sum_probs=24.2
Q ss_pred CCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 231 RAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 231 ~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
+++..-+.+.||+|+|||||++.|++.+
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455669999999999999999999876
No 420
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.37 E-value=0.0067 Score=57.93 Aligned_cols=25 Identities=40% Similarity=0.737 Sum_probs=22.0
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
-..|+.||||||||++.+-||.-+.
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhh
Confidence 4578999999999999999998763
No 421
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.37 E-value=0.003 Score=61.28 Aligned_cols=40 Identities=30% Similarity=0.256 Sum_probs=31.0
Q ss_pred hCCCcCccccccCCCCchHHHHHHHHHHH---hCCceeecccc
Q 011573 229 IGRAWKRGYLLYGPPGTGKSTMIAAMANL---LGYDLYDLELT 268 (482)
Q Consensus 229 ~g~~~~rg~LL~GPpGtGKTsl~~aiA~~---l~~~i~~l~l~ 268 (482)
-|++....+|++||||||||+|+..++.+ -|.+.+.+.+.
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 37888888999999999999999876543 26666666554
No 422
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.36 E-value=0.0073 Score=67.56 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=23.8
Q ss_pred CCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 231 RAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 231 ~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
+++..-+-+.|++|||||||++.|.+.+
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4444459999999999999999999866
No 423
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.35 E-value=0.0021 Score=61.69 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=27.4
Q ss_pred hCCCcCccccccCCCCchHHHHHHHHHHHh----CCceeecc
Q 011573 229 IGRAWKRGYLLYGPPGTGKSTMIAAMANLL----GYDLYDLE 266 (482)
Q Consensus 229 ~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----~~~i~~l~ 266 (482)
-|+|...-+|+.||||||||+|+..++... |.+++.++
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 377878889999999999999998765332 55555443
No 424
>PLN02459 probable adenylate kinase
Probab=96.35 E-value=0.0027 Score=62.36 Aligned_cols=29 Identities=31% Similarity=0.607 Sum_probs=25.8
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
.++|.||||+|||++++.+|..+++..+.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is 59 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIA 59 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 47888999999999999999999977664
No 425
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.35 E-value=0.0043 Score=63.55 Aligned_cols=59 Identities=24% Similarity=0.408 Sum_probs=41.0
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHhCCceeec-ccccccChHHHHHHHHhcCCCeEEEEeCCc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL-ELTAVKDNTELRKLLIETSSKSIIVIEDID 295 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l-~l~~~~~~~~L~~l~~~~~~~sIl~iDdiD 295 (482)
|+|-+..++|||||+||||+++-.+-..++..++.. +-.+ +-.+.-....-|-+|||+-
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns~S-------hFWLqPL~d~Ki~llDDAT 317 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS-------HFWLQPLADAKIALLDDAT 317 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGTTS-------CGGGGGGCT-SSEEEEEE-
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEecCCCC-------cccccchhcCcEEEEcCCc
Confidence 788888999999999999999999999999888763 1111 1112223344577888754
No 426
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.014 Score=62.73 Aligned_cols=26 Identities=38% Similarity=0.519 Sum_probs=22.1
Q ss_pred cCccccccCCCCchHHHHHHHHHHHh
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
+..-+.|.||+|+|||+++..||..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998764
No 427
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.33 E-value=0.013 Score=53.46 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=19.0
Q ss_pred ccccccCCCCchHHH-HHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKST-MIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTs-l~~aiA~~l 258 (482)
+.+++.||+|||||. ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 688999999999999 555555544
No 428
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.32 E-value=0.0026 Score=58.56 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=23.2
Q ss_pred CccccccCCCCchHHHHHHHHHHHhC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
+.-++|.|+||+|||++++++++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999985
No 429
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.30 E-value=0.0035 Score=57.68 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.3
Q ss_pred CccccccCCCCchHHHHHHHHHHHh
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
..-+.|.|+||+|||++++++|..+
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999987
No 430
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.29 E-value=0.0024 Score=58.73 Aligned_cols=22 Identities=36% Similarity=0.789 Sum_probs=19.9
Q ss_pred ccccCCCCchHHHHHHHHHHHh
Q 011573 237 YLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l 258 (482)
++|.|+||+||||+++.++.++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999999988
No 431
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.28 E-value=0.0024 Score=58.87 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.3
Q ss_pred cccccCCCCchHHHHHHHHHHHhCC
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGY 260 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~ 260 (482)
-+++.||||+|||+++++||..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4689999999999999999998764
No 432
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.27 E-value=0.013 Score=56.97 Aligned_cols=62 Identities=23% Similarity=0.488 Sum_probs=40.2
Q ss_pred ccccccCCCCchHHHHHHHHHHH-----hCCce---------ee-----cccc-ccc--------ChHHHHHHHHhcCCC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL-----LGYDL---------YD-----LELT-AVK--------DNTELRKLLIETSSK 286 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~-----l~~~i---------~~-----l~l~-~~~--------~~~~L~~l~~~~~~~ 286 (482)
+.++|.||..+|||++.+.+|-. +|..+ ++ +... ++. .-.++..++..+..+
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~ 123 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEK 123 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TT
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccc
Confidence 67899999999999999998753 34322 11 1000 110 124577888888899
Q ss_pred eEEEEeCCcc
Q 011573 287 SIIVIEDIDC 296 (482)
Q Consensus 287 sIl~iDdiD~ 296 (482)
++|+|||+-.
T Consensus 124 sLvliDE~g~ 133 (235)
T PF00488_consen 124 SLVLIDELGR 133 (235)
T ss_dssp EEEEEESTTT
T ss_pred eeeecccccC
Confidence 9999999775
No 433
>PRK12338 hypothetical protein; Provisional
Probab=96.27 E-value=0.0028 Score=63.97 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=26.3
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCcee
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLY 263 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~ 263 (482)
+.-+++.|+||||||++++++|..+|...+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 457889999999999999999999987643
No 434
>PLN02165 adenylate isopentenyltransferase
Probab=96.26 E-value=0.0033 Score=63.73 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=29.1
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeecccc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELT 268 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~ 268 (482)
.-+.|.||+|+|||+|+.+||..++..++..+--
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 3588999999999999999999999887765533
No 435
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.26 E-value=0.0064 Score=61.45 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=24.9
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
|++...-++++||||||||+++..+|...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~ 119 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNV 119 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 67777778999999999999999888663
No 436
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.26 E-value=0.0033 Score=57.48 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.5
Q ss_pred cCCCCchHHHHHHHHHHHhCCceeec
Q 011573 240 YGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 240 ~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
.||||||||++++++|+.++..+++-
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~ 26 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDG 26 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeC
Confidence 49999999999999999998765543
No 437
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.25 E-value=0.0085 Score=61.70 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.5
Q ss_pred cccccCCCCchHHHHHHHHHHHhC
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
-.|+.||||||||++++.+|+.+.
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 369999999999999999999873
No 438
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.24 E-value=0.012 Score=60.33 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=21.1
Q ss_pred CcCccccccCCCCchHHHHHHHHHH
Q 011573 232 AWKRGYLLYGPPGTGKSTMIAAMAN 256 (482)
Q Consensus 232 ~~~rg~LL~GPpGtGKTsl~~aiA~ 256 (482)
.+|+|+.|||.-|||||+|.-..-.
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~ 136 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYD 136 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhh
Confidence 3489999999999999999876553
No 439
>PRK13808 adenylate kinase; Provisional
Probab=96.23 E-value=0.0031 Score=64.10 Aligned_cols=29 Identities=31% Similarity=0.558 Sum_probs=26.0
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
++|.||||+|||++++.||..+|+..+++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 78999999999999999999999876653
No 440
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.23 E-value=0.01 Score=65.29 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.8
Q ss_pred CcCccccccCCCCchHHHHHHHHHHHh
Q 011573 232 AWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 232 ~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
++..-+.+.||.|+|||||++.|++.+
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 445569999999999999999999977
No 441
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.22 E-value=0.012 Score=53.64 Aligned_cols=64 Identities=27% Similarity=0.473 Sum_probs=40.2
Q ss_pred ccccccCCCCchHHHHHHHHHHHh---------------CCceeecc----cc--ccc-Ch---HHHHHHHHhcC--CCe
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL---------------GYDLYDLE----LT--AVK-DN---TELRKLLIETS--SKS 287 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l---------------~~~i~~l~----l~--~~~-~~---~~L~~l~~~~~--~~s 287 (482)
+-.++.||.|+|||++.++++-.+ ++.+-..+ .. .+. .. ..+..++...+ .|.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ 101 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRP 101 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCC
Confidence 468899999999999999986543 22222222 11 111 12 23445555444 889
Q ss_pred EEEEeCCcccc
Q 011573 288 IIVIEDIDCSL 298 (482)
Q Consensus 288 Il~iDdiD~~~ 298 (482)
++++||+..-+
T Consensus 102 llllDEp~~gl 112 (162)
T cd03227 102 LYILDEIDRGL 112 (162)
T ss_pred EEEEeCCCCCC
Confidence 99999998743
No 442
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=96.21 E-value=0.019 Score=61.68 Aligned_cols=66 Identities=26% Similarity=0.409 Sum_probs=42.9
Q ss_pred CCcCccccccCCCCchHHHHHHHHHHHhCCc-eeecccccccChHHHHHHHHhcCCCeEEEEeCCcc
Q 011573 231 RAWKRGYLLYGPPGTGKSTMIAAMANLLGYD-LYDLELTAVKDNTELRKLLIETSSKSIIVIEDIDC 296 (482)
Q Consensus 231 ~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~-i~~l~l~~~~~~~~L~~l~~~~~~~sIl~iDdiD~ 296 (482)
..|...++|+||-|+|||+++..|.+.+|.. +..+.++.+...+.=+.-+...-..+++..+|.+.
T Consensus 227 ~~~~k~~~l~G~G~nGKstf~~li~~llG~~n~~s~~~~~~~~~~~~~~~~A~Lvg~~~v~~~E~~k 293 (517)
T COG3378 227 VSEQKLFWLYGPGGNGKSTFVDLISNLLGRYNVTSAPLTDLEADDRHPFGLAALVGKRLVTVSETEK 293 (517)
T ss_pred ccceeEEEEEcCCCCChHHHHHHHHHHhccchhccccHHHhhhhccCcchHHHhhCceEEEecCccc
Confidence 3477889999999999999999999999753 33444443331111111222334567777887765
No 443
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.21 E-value=0.014 Score=56.10 Aligned_cols=63 Identities=24% Similarity=0.425 Sum_probs=42.3
Q ss_pred CccccccCCCCchHHHHHHHHHHH-----hCC---------ceeeccccccc--------------ChHHHHHHHHhcCC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL-----LGY---------DLYDLELTAVK--------------DNTELRKLLIETSS 285 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~-----l~~---------~i~~l~l~~~~--------------~~~~L~~l~~~~~~ 285 (482)
.+.++|.||.|.|||++.+.++.. .|. ++++-=++.+. .-.++..++..+..
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 109 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATP 109 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhCCC
Confidence 457899999999999999988754 232 22110011110 12456677888889
Q ss_pred CeEEEEeCCcc
Q 011573 286 KSIIVIEDIDC 296 (482)
Q Consensus 286 ~sIl~iDdiD~ 296 (482)
+++++|||+-.
T Consensus 110 ~sLvLlDE~~~ 120 (218)
T cd03286 110 DSLVILDELGR 120 (218)
T ss_pred CeEEEEecccC
Confidence 99999999765
No 444
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.20 E-value=0.0032 Score=58.73 Aligned_cols=26 Identities=27% Similarity=0.631 Sum_probs=23.4
Q ss_pred CccccccCCCCchHHHHHHHHHHHhC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
...+++.||+|+|||++++++++.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 56799999999999999999998774
No 445
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.20 E-value=0.0033 Score=58.26 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=24.1
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCce
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDL 262 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i 262 (482)
-+.|.||+|+|||++++++++.++...
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~~ 31 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAKF 31 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEE
Confidence 478999999999999999999988643
No 446
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.19 E-value=0.0061 Score=61.03 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=25.8
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYD 261 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~ 261 (482)
|--+|+.||+|||||++|..+|..+|.+
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999999887
No 447
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.19 E-value=0.0035 Score=59.08 Aligned_cols=31 Identities=29% Similarity=0.280 Sum_probs=27.6
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
-+.++||+|+|||++++.++..+|+++++.+
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 3678999999999999999999899988654
No 448
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.19 E-value=0.0037 Score=56.62 Aligned_cols=35 Identities=31% Similarity=0.463 Sum_probs=27.2
Q ss_pred cccccCCCCchHHHHHHHHHHHh---CCceeecccccc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAV 270 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~ 270 (482)
-++|.|.||+|||++|+++...| |.+++.++-..+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 47899999999999999999887 666666654433
No 449
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.18 E-value=0.0086 Score=59.46 Aligned_cols=36 Identities=33% Similarity=0.362 Sum_probs=27.9
Q ss_pred CccccccCCCCchHHHHHHHHHHHh---CCceeeccccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTA 269 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~ 269 (482)
++-++|.||||+|||+++..+|..+ |..+..+++..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 4668888999999999999999877 55555555443
No 450
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.17 E-value=0.011 Score=66.19 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=42.0
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHH---hCCceeeccccc---------------------ccChHHHHHHHH---h
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANL---LGYDLYDLELTA---------------------VKDNTELRKLLI---E 282 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~---l~~~i~~l~l~~---------------------~~~~~~L~~l~~---~ 282 (482)
|++..+-++++||||||||+|+..++.. .|..+..++... ..+.+.+..+.. .
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 6777778999999999999999654332 233333332221 111222222222 2
Q ss_pred cCCCeEEEEeCCcccc
Q 011573 283 TSSKSIIVIEDIDCSL 298 (482)
Q Consensus 283 ~~~~sIl~iDdiD~~~ 298 (482)
...+.+|+||-|..++
T Consensus 136 ~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 136 SGALDIVVIDSVAALV 151 (790)
T ss_pred cCCCeEEEEcchhhhc
Confidence 2468899999999875
No 451
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.16 E-value=0.0044 Score=59.97 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=31.2
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh----CCceeecccc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL----GYDLYDLELT 268 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----~~~i~~l~l~ 268 (482)
|+++..-++|.||||+|||+++..+|..+ +.+++.+++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 77777789999999999999999887654 6777665543
No 452
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.16 E-value=0.0047 Score=62.68 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=23.1
Q ss_pred CccccccCCCCchHHHHHHHHHHHh
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
+.++|+.||+|+||||+++|++.++
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999876
No 453
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.15 E-value=0.0068 Score=65.20 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=36.4
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHH----hCCceeecccccccChHHHHHHHH
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANL----LGYDLYDLELTAVKDNTELRKLLI 281 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~----l~~~i~~l~l~~~~~~~~L~~l~~ 281 (482)
|+|..+.||+.||||||||+|+..++.+ .|-+.+.+.+. ++..++.+-..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e--E~~~~l~~~~~ 70 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE--ESPQDIIKNAR 70 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe--cCHHHHHHHHH
Confidence 7888899999999999999999987543 25677776664 34444444433
No 454
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.15 E-value=0.01 Score=60.83 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=23.3
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHH
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMAN 256 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~ 256 (482)
|++...-++++||||+|||.|+..+|-
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~ 145 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCV 145 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHH
Confidence 677777789999999999999987774
No 455
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.15 E-value=0.0031 Score=61.38 Aligned_cols=30 Identities=37% Similarity=0.758 Sum_probs=21.8
Q ss_pred ccCCCCchHHHHHHHHHHHh---CCceeecccc
Q 011573 239 LYGPPGTGKSTMIAAMANLL---GYDLYDLELT 268 (482)
Q Consensus 239 L~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~ 268 (482)
+.||||+||||+++++...+ +.+++.+|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence 36999999999999999987 5566666554
No 456
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.14 E-value=0.0033 Score=59.34 Aligned_cols=25 Identities=44% Similarity=0.622 Sum_probs=22.4
Q ss_pred CccccccCCCCchHHHHHHHHHHHh
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
|+-++|.||+|+||||.+.-+|.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4568899999999999999999877
No 457
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.12 E-value=0.016 Score=69.68 Aligned_cols=91 Identities=23% Similarity=0.319 Sum_probs=65.0
Q ss_pred CCCccc-cccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccChH
Q 011573 196 PATFQT-LAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNT 274 (482)
Q Consensus 196 p~~~~~-l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~ 274 (482)
|..+++ .+..+.+++.+.+....+..+ +..+||-||.|+|||++++-+|...|..+..++..+..+-.
T Consensus 412 ~~~~~~~~i~T~~vq~~la~~~~a~~~~-----------~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~q 480 (1856)
T KOG1808|consen 412 LTSEATHYIITPRVQKNLADLARAISSG-----------KFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQ 480 (1856)
T ss_pred cccccceeeccHHHHHHHHHHHHHHhcC-----------CCCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHH
Confidence 345555 566677776665555544443 45899999999999999999999999999988776654333
Q ss_pred HHH----------------HHHHhcCCCeEEEEeCCccc
Q 011573 275 ELR----------------KLLIETSSKSIIVIEDIDCS 297 (482)
Q Consensus 275 ~L~----------------~l~~~~~~~sIl~iDdiD~~ 297 (482)
++. .+...+...+.+|+|++.-.
T Consensus 481 eyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla 519 (1856)
T KOG1808|consen 481 EYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLA 519 (1856)
T ss_pred HHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEecccccc
Confidence 222 23334457899999998863
No 458
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.11 E-value=0.01 Score=62.64 Aligned_cols=29 Identities=34% Similarity=0.423 Sum_probs=26.5
Q ss_pred cCccccccCCCCchHHHHHHHHHHHhCCc
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLLGYD 261 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l~~~ 261 (482)
.+.-++++|+||||||+++..+|..++..
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 36778999999999999999999999986
No 459
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.11 E-value=0.0067 Score=61.58 Aligned_cols=34 Identities=26% Similarity=0.258 Sum_probs=26.6
Q ss_pred CccccccCCCCchHHHHHHHHHHHh---CCceeeccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLEL 267 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l 267 (482)
+.-++|.||+|+||||++..+|..+ +..+..+++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4557899999999999999999987 444554443
No 460
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.08 E-value=0.015 Score=63.20 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=23.9
Q ss_pred CCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 231 RAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 231 ~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
+++..-+.+.||+|+|||||++.|++..
T Consensus 345 i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 345 VPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445569999999999999999999876
No 461
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.08 E-value=0.012 Score=64.70 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=23.5
Q ss_pred CcCccccccCCCCchHHHHHHHHHHHh
Q 011573 232 AWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 232 ~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
++..-+.+.||+|+|||||++.|++.+
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 345569999999999999999999876
No 462
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.07 E-value=0.0042 Score=58.07 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.0
Q ss_pred cCccccccCCCCchHHHHHHHHHHHh
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.++-++|.||||+|||++++++....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35678999999999999999998876
No 463
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.07 E-value=0.0069 Score=53.33 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.1
Q ss_pred ccccCCCCchHHHHHHHHHHH
Q 011573 237 YLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~ 257 (482)
+.|.||+|+|||+|++++.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 578999999999999999875
No 464
>PRK04328 hypothetical protein; Provisional
Probab=96.07 E-value=0.0054 Score=60.05 Aligned_cols=40 Identities=33% Similarity=0.300 Sum_probs=30.4
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHH-h--CCceeeccccc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANL-L--GYDLYDLELTA 269 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~-l--~~~i~~l~l~~ 269 (482)
|+|....+|++||||||||.|+..++.+ + |.+.+.+++..
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 6777888999999999999999876543 2 55666665443
No 465
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.06 E-value=0.0048 Score=56.55 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=27.6
Q ss_pred ccccCCCCchHHHHHHHHHHHh---CCceeecccccc
Q 011573 237 YLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAV 270 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~ 270 (482)
+++.||||+|||+++..+|..+ +..+..+++...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 5789999999999999999876 666766666544
No 466
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.06 E-value=0.0079 Score=55.19 Aligned_cols=37 Identities=35% Similarity=0.507 Sum_probs=30.1
Q ss_pred CccccccCCCCchHHHHHHHHHHHh---CCceeecccccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAV 270 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~ 270 (482)
+.-+.|.|.+|+|||++|.|++..| |+..|.+|-..+
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 3467899999999999999999987 778877764433
No 467
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.05 E-value=0.014 Score=64.75 Aligned_cols=32 Identities=31% Similarity=0.604 Sum_probs=25.1
Q ss_pred ccccccCCCCchHHHHHHHHHHHh---CCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~ 266 (482)
..+|++||||||||+++.++...+ |..+..+.
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a 208 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTA 208 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 468899999999999998887765 56655544
No 468
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.04 E-value=0.0089 Score=60.67 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=24.8
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHH
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
|++...-++++||||||||.++..+|-.
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~ 125 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVN 125 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 6777777899999999999999998865
No 469
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.02 E-value=0.0051 Score=57.96 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=24.0
Q ss_pred cCccccccCCCCchHHHHHHHHHHHhC
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
...-+.|.||+|+|||+|++.|++.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345688999999999999999999876
No 470
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.01 E-value=0.012 Score=63.87 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=23.9
Q ss_pred CCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 231 RAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 231 ~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
+++..-+.+.||+|+|||||++.+++.+
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445569999999999999999999876
No 471
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.01 E-value=0.0049 Score=57.20 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=24.5
Q ss_pred ccccCCCCchHHHHHHHHHHHhC---Cceeecccc
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLG---YDLYDLELT 268 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~---~~i~~l~l~ 268 (482)
+.+.|+||||||++++.|+..++ .++..+++.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~D 36 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLD 36 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehh
Confidence 46889999999999999999874 444444333
No 472
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.01 E-value=0.0042 Score=58.56 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=28.0
Q ss_pred CcCccccccCCCCchHHHHHHHHHHHh-CCceeecccccc
Q 011573 232 AWKRGYLLYGPPGTGKSTMIAAMANLL-GYDLYDLELTAV 270 (482)
Q Consensus 232 ~~~rg~LL~GPpGtGKTsl~~aiA~~l-~~~i~~l~l~~~ 270 (482)
.-|.-+++.||||+|||+++..+...+ +..++.++...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~ 52 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF 52 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH
Confidence 346788999999999999999999888 566666655544
No 473
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.00 E-value=0.0035 Score=57.75 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.2
Q ss_pred cccccCCCCchHHHHHHHHHHHhCC
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGY 260 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~ 260 (482)
-++|.||+|+|||++++.|++.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 4789999999999999999997754
No 474
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.99 E-value=0.0048 Score=57.72 Aligned_cols=29 Identities=17% Similarity=0.262 Sum_probs=23.3
Q ss_pred ccccCCCCchHHHHHHHHHHHh-CCceeec
Q 011573 237 YLLYGPPGTGKSTMIAAMANLL-GYDLYDL 265 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l-~~~i~~l 265 (482)
+.+.|+||||||++++.|+..+ +..++.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~ 31 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQ 31 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEcc
Confidence 4578999999999999999998 4444433
No 475
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.99 E-value=0.011 Score=56.65 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=29.2
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeeccc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLEL 267 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l 267 (482)
|+|...-+++.||||+|||.++..+|... |.+++.+++
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 77777789999999999999999887543 555554444
No 476
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.98 E-value=0.015 Score=61.98 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=28.9
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLE 266 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~ 266 (482)
|++...-+||+|+||+|||+|+..+|..+ +.+++.++
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 67777779999999999999999987765 34554443
No 477
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.98 E-value=0.0057 Score=58.01 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.7
Q ss_pred CccccccCCCCchHHHHHHHHHHHhC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
+.-+.+.||||||||||+++|++.++
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578899999999999999999983
No 478
>PRK08356 hypothetical protein; Provisional
Probab=95.97 E-value=0.005 Score=57.84 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=22.5
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCcee
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLY 263 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~ 263 (482)
-++|.||||+||||+++.|+ +.|++.+
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~-~~g~~~i 33 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFE-EKGFCRV 33 (195)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCcEE
Confidence 47789999999999999996 4677643
No 479
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.97 E-value=0.011 Score=56.72 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=39.8
Q ss_pred ccccccCCCCchHHHHHHHHHH-----HhCCce---------eeccccccc---------C-----hHHHHHHHHhcCCC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMAN-----LLGYDL---------YDLELTAVK---------D-----NTELRKLLIETSSK 286 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~-----~l~~~i---------~~l~l~~~~---------~-----~~~L~~l~~~~~~~ 286 (482)
+-++|.||.|+|||++.+.+|. ..|.++ +.--...+. + -..+..++..+..+
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~ 110 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER 110 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence 5688999999999999999974 223221 110001110 0 12356667777899
Q ss_pred eEEEEeCCcc
Q 011573 287 SIIVIEDIDC 296 (482)
Q Consensus 287 sIl~iDdiD~ 296 (482)
+++++||.-.
T Consensus 111 ~llllDEp~~ 120 (216)
T cd03284 111 SLVLLDEIGR 120 (216)
T ss_pred eEEEEecCCC
Confidence 9999999754
No 480
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.97 E-value=0.0051 Score=58.97 Aligned_cols=30 Identities=43% Similarity=0.625 Sum_probs=26.3
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
-+-+.||+||||||+++.||..+++++++-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~ 33 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDS 33 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeC
Confidence 466889999999999999999999887753
No 481
>PRK00023 cmk cytidylate kinase; Provisional
Probab=95.95 E-value=0.0046 Score=59.60 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=28.6
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeeccc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLEL 267 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l 267 (482)
.-+.+.||||||||++++.+|..+|+++++.+.
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~ 37 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGA 37 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCch
Confidence 457789999999999999999999998886443
No 482
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=95.94 E-value=0.0051 Score=57.82 Aligned_cols=31 Identities=35% Similarity=0.383 Sum_probs=27.1
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeeccc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLEL 267 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l 267 (482)
-+.|.|++|||||++++.++. +|+++++.+.
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~ 34 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPVIDADA 34 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEecH
Confidence 478999999999999999998 8988877653
No 483
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.94 E-value=0.013 Score=60.83 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=22.2
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.-+++.||||||||+++++|++.+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 3489999999999999999999863
No 484
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.93 E-value=0.0051 Score=59.11 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=24.2
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHH
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
|++....++++||||||||+++..+|..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~ 43 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYK 43 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHH
Confidence 6777778999999999999999987653
No 485
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.93 E-value=0.16 Score=49.34 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=73.0
Q ss_pred cCcc-ccccCCCCchHHHHHHHHHHHhCCcee---eccccccc-------------C-------------hHHHHHHHHh
Q 011573 233 WKRG-YLLYGPPGTGKSTMIAAMANLLGYDLY---DLELTAVK-------------D-------------NTELRKLLIE 282 (482)
Q Consensus 233 ~~rg-~LL~GPpGtGKTsl~~aiA~~l~~~i~---~l~l~~~~-------------~-------------~~~L~~l~~~ 282 (482)
..+| +.++|+-|+|||.+++|+...++-+-+ .++-..+. . ...|..++..
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~ 128 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKK 128 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHh
Confidence 3565 457999999999999988877753321 22211111 1 1234444445
Q ss_pred cCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEec
Q 011573 283 TSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTT 362 (482)
Q Consensus 283 ~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TT 362 (482)
-..|-++++||.+.+-+ ..--.+.-|.|.-++... ...+++|+=
T Consensus 129 g~r~v~l~vdEah~L~~---------------------------------~~le~Lrll~nl~~~~~~--~l~ivL~Gq- 172 (269)
T COG3267 129 GKRPVVLMVDEAHDLND---------------------------------SALEALRLLTNLEEDSSK--LLSIVLIGQ- 172 (269)
T ss_pred CCCCeEEeehhHhhhCh---------------------------------hHHHHHHHHHhhcccccC--ceeeeecCC-
Confidence 56779999999887521 001112222232222211 112344442
Q ss_pred CCcCcCCH--------hhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 363 NYIEKLDP--------ALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 363 N~~~~LD~--------aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
| +|.| .+.+ |++..|++++.+.++-...++..|..
T Consensus 173 --p-~L~~~lr~~~l~e~~~--R~~ir~~l~P~~~~~t~~yl~~~Le~ 215 (269)
T COG3267 173 --P-KLRPRLRLPVLRELEQ--RIDIRIELPPLTEAETGLYLRHRLEG 215 (269)
T ss_pred --c-ccchhhchHHHHhhhh--eEEEEEecCCcChHHHHHHHHHHHhc
Confidence 2 2222 3335 99988999999999777777777753
No 486
>PRK06761 hypothetical protein; Provisional
Probab=95.93 E-value=0.005 Score=61.25 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=26.6
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
+-+++.||||+||||+++.++..+....+.++
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 45889999999999999999999976555443
No 487
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.92 E-value=0.048 Score=49.63 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=21.5
Q ss_pred ccccCCCCchHHHHHHHHHHHh---CCceee
Q 011573 237 YLLYGPPGTGKSTMIAAMANLL---GYDLYD 264 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l---~~~i~~ 264 (482)
+.+|+++|+|||++|-++|-.. |..+..
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 5678999999999999987654 555444
No 488
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=95.92 E-value=0.025 Score=51.25 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=19.8
Q ss_pred cccccCCCCchHHHHHHHHHHHh
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.++|.|+||+|||+++.++++..
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999988543
No 489
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.90 E-value=0.016 Score=65.12 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=23.9
Q ss_pred CCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 231 RAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 231 ~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
+++...+.+.||+|+|||||++.|++.+
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445569999999999999999999876
No 490
>PRK14974 cell division protein FtsY; Provisional
Probab=95.90 E-value=0.021 Score=58.40 Aligned_cols=34 Identities=32% Similarity=0.389 Sum_probs=26.5
Q ss_pred CccccccCCCCchHHHHHHHHHHHh---CCceeeccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLEL 267 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l 267 (482)
++-++|.||||+||||+++.+|..+ +..+..+.+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4568899999999999999999876 445544443
No 491
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.90 E-value=0.039 Score=62.18 Aligned_cols=24 Identities=42% Similarity=0.664 Sum_probs=21.0
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
+-.+|.|+||||||++++++...+
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~ 362 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELA 362 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999997765
No 492
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.88 E-value=0.006 Score=61.59 Aligned_cols=33 Identities=18% Similarity=0.410 Sum_probs=28.4
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeeccc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLEL 267 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l 267 (482)
.-+++.||+|||||+++..||.+++..++..|.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 467899999999999999999999887765544
No 493
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.87 E-value=0.0066 Score=57.00 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.2
Q ss_pred ccccCCCCchHHHHHHHHHHHh
Q 011573 237 YLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l 258 (482)
+.|.||+|+|||+++++|++.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999987
No 494
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.87 E-value=0.014 Score=57.50 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=21.4
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
|++...-+=|+||||||||-|+..+|-..
T Consensus 34 Gi~~g~itEi~G~~gsGKTql~l~l~~~~ 62 (256)
T PF08423_consen 34 GIPTGSITEIVGESGSGKTQLCLQLAVNV 62 (256)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEEEecccccchHHHHHHHHh
Confidence 45443334589999999999998887543
No 495
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.86 E-value=0.018 Score=64.88 Aligned_cols=28 Identities=32% Similarity=0.348 Sum_probs=24.0
Q ss_pred CCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 231 RAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 231 ~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
+++..-+.+.||+|+|||||++.|++.+
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445569999999999999999999876
No 496
>PRK10867 signal recognition particle protein; Provisional
Probab=95.85 E-value=0.019 Score=60.54 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhhCH-HHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----CCceeecccccc
Q 011573 208 EKKEIIDDLIAFSKSE-DFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----GYDLYDLELTAV 270 (482)
Q Consensus 208 ~k~~i~~~l~~fl~~~-~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----~~~i~~l~l~~~ 270 (482)
+++.+.+.+...+... ..+. .....+.-+++.||||+||||++..+|.++ |..+..+++...
T Consensus 74 ~~~~v~~el~~~l~~~~~~~~-~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 74 VIKIVNDELVEILGGENSELN-LAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred HHHHHHHHHHHHhCCCcceee-ecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 4445555555555321 1111 122335678999999999999999998865 556666665544
No 497
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=95.84 E-value=0.013 Score=52.78 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.4
Q ss_pred ccccCCCCchHHHHHHHHHHHh
Q 011573 237 YLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l 258 (482)
++|.|++|+|||+|+.++.+..
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhc
Confidence 6789999999999999997643
No 498
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.84 E-value=0.0091 Score=63.15 Aligned_cols=84 Identities=24% Similarity=0.377 Sum_probs=54.3
Q ss_pred CCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCcc-ccccCCCCchHHHHHHHHHHHhCCcee---ec------
Q 011573 196 PATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRG-YLLYGPPGTGKSTMIAAMANLLGYDLY---DL------ 265 (482)
Q Consensus 196 p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg-~LL~GPpGtGKTsl~~aiA~~l~~~i~---~l------ 265 (482)
.-+|+.+.+.+...+.+...+.. |.| +|+.||.|+|||++.-++-++++-+-. .+
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~~---------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLNR---------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHhC---------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 35678888888877766544422 456 566899999999999999999865432 22
Q ss_pred ccccc---c--------ChHHHHHHHHhcCCCeEEEEeCCcc
Q 011573 266 ELTAV---K--------DNTELRKLLIETSSKSIIVIEDIDC 296 (482)
Q Consensus 266 ~l~~~---~--------~~~~L~~l~~~~~~~sIl~iDdiD~ 296 (482)
.+..+ . -...|+.++. ..|-||.+.||--
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LR--qDPDvImVGEIRD 338 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILR--QDPDVIMVGEIRD 338 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhc--cCCCeEEEeccCC
Confidence 11111 1 1223444432 4688999999864
No 499
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.84 E-value=0.0045 Score=58.08 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=21.1
Q ss_pred ccccCCCCchHHHHHHHHHHHhC
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
+-+.||||+|||+++++|+..|+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999996
No 500
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.84 E-value=0.0056 Score=58.06 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.1
Q ss_pred ccccCCCCchHHHHHHHHHHHhC
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
+.+.||+|+|||||+++|++.++
T Consensus 9 i~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 9 IGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 56899999999999999999886
Done!