Query 011573
Match_columns 482
No_of_seqs 417 out of 3065
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 10:57:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 3.4E-43 1.2E-47 360.6 20.9 241 194-458 142-395 (405)
2 4b4t_I 26S protease regulatory 100.0 4.5E-43 1.5E-47 360.7 18.7 241 193-457 175-428 (437)
3 4b4t_L 26S protease subunit RP 100.0 5.2E-42 1.8E-46 356.8 19.3 237 194-454 175-424 (437)
4 4b4t_M 26S protease regulatory 100.0 3.8E-42 1.3E-46 357.5 16.6 237 192-452 173-422 (434)
5 4b4t_K 26S protease regulatory 100.0 1.8E-41 6.1E-46 352.2 20.4 234 194-451 166-413 (428)
6 4b4t_H 26S protease regulatory 100.0 3.1E-41 1E-45 350.2 20.3 240 193-456 202-454 (467)
7 3cf2_A TER ATPase, transitiona 100.0 5.9E-36 2E-40 331.2 6.5 213 195-431 472-693 (806)
8 3cf2_A TER ATPase, transitiona 100.0 1E-33 3.5E-38 313.4 15.0 209 196-431 200-417 (806)
9 3cf0_A Transitional endoplasmi 100.0 6.5E-30 2.2E-34 255.3 20.2 214 194-431 9-231 (301)
10 2x8a_A Nuclear valosin-contain 100.0 6.6E-30 2.3E-34 252.0 19.4 210 195-431 5-228 (274)
11 3h4m_A Proteasome-activating n 100.0 1.1E-28 3.7E-33 243.4 20.6 241 192-456 9-262 (285)
12 2ce7_A Cell division protein F 100.0 3.9E-29 1.3E-33 263.4 18.3 233 195-452 11-256 (476)
13 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.8E-28 1.3E-32 244.9 22.0 209 194-431 6-225 (322)
14 2qz4_A Paraplegin; AAA+, SPG7, 100.0 9.4E-29 3.2E-33 240.2 16.9 236 196-455 2-252 (262)
15 1lv7_A FTSH; alpha/beta domain 100.0 2.7E-28 9.2E-33 237.4 17.6 214 193-431 5-227 (257)
16 3eie_A Vacuolar protein sortin 100.0 7.9E-28 2.7E-32 242.3 18.6 211 192-431 10-230 (322)
17 2qp9_X Vacuolar protein sortin 99.9 3.3E-27 1.1E-31 241.1 17.9 208 194-430 45-262 (355)
18 3hu3_A Transitional endoplasmi 99.9 7.8E-27 2.7E-31 247.5 18.1 210 195-431 199-417 (489)
19 2dhr_A FTSH; AAA+ protein, hex 99.9 7.3E-27 2.5E-31 247.5 17.8 234 195-453 26-272 (499)
20 2zan_A Vacuolar protein sortin 99.9 2E-26 6.9E-31 242.1 18.2 208 194-430 128-346 (444)
21 2r62_A Cell division protease 99.9 1.6E-27 5.4E-32 233.1 9.1 214 195-431 6-228 (268)
22 1ixz_A ATP-dependent metallopr 99.9 9.7E-26 3.3E-30 218.9 19.3 212 195-431 11-231 (254)
23 3vfd_A Spastin; ATPase, microt 99.9 5.4E-25 1.8E-29 227.3 18.5 212 192-431 107-328 (389)
24 3d8b_A Fidgetin-like protein 1 99.9 4.6E-25 1.6E-29 225.3 17.5 209 195-431 79-297 (357)
25 1iy2_A ATP-dependent metallopr 99.9 1.7E-24 5.7E-29 213.3 19.6 212 195-431 35-255 (278)
26 3b9p_A CG5977-PA, isoform A; A 99.9 1.1E-24 3.7E-29 216.1 18.0 210 194-431 15-235 (297)
27 3t15_A Ribulose bisphosphate c 99.9 7.2E-26 2.5E-30 225.2 8.0 171 228-426 30-221 (293)
28 1ypw_A Transitional endoplasmi 99.9 2.2E-27 7.4E-32 266.0 -4.4 213 195-431 472-693 (806)
29 1ypw_A Transitional endoplasmi 99.9 6.3E-23 2.2E-27 229.9 14.5 209 195-430 199-416 (806)
30 2c9o_A RUVB-like 1; hexameric 99.8 7.4E-22 2.5E-26 208.0 -1.1 213 195-430 32-261 (456)
31 3pfi_A Holliday junction ATP-d 99.8 1E-18 3.5E-23 176.2 21.4 191 193-429 22-227 (338)
32 3syl_A Protein CBBX; photosynt 99.8 3.6E-18 1.2E-22 169.7 19.4 170 201-405 32-222 (309)
33 1g41_A Heat shock protein HSLU 99.8 6.8E-20 2.3E-24 190.8 2.2 163 200-396 15-188 (444)
34 1hqc_A RUVB; extended AAA-ATPa 99.8 6.9E-18 2.4E-22 168.7 16.7 191 194-430 6-212 (324)
35 1d2n_A N-ethylmaleimide-sensit 99.7 6.2E-17 2.1E-21 158.4 16.3 166 201-398 34-210 (272)
36 1ofh_A ATP-dependent HSL prote 99.7 3.2E-17 1.1E-21 162.4 13.5 174 201-400 16-215 (310)
37 2chg_A Replication factor C sm 99.7 3E-16 1E-20 146.5 18.6 154 193-402 10-176 (226)
38 3u61_B DNA polymerase accessor 99.7 5.4E-17 1.9E-21 162.6 14.4 157 187-400 15-178 (324)
39 3uk6_A RUVB-like 2; hexameric 99.7 7.8E-17 2.7E-21 164.0 14.3 184 197-431 41-305 (368)
40 1njg_A DNA polymerase III subu 99.7 4.5E-16 1.5E-20 146.9 17.7 182 193-429 16-228 (250)
41 3hws_A ATP-dependent CLP prote 99.7 2.2E-17 7.6E-22 168.5 7.1 175 202-400 17-269 (363)
42 1jbk_A CLPB protein; beta barr 99.7 8.9E-17 3.1E-21 146.5 8.7 152 195-396 17-194 (195)
43 3m6a_A ATP-dependent protease 99.7 5.8E-16 2E-20 166.4 15.5 160 199-400 80-266 (543)
44 2r44_A Uncharacterized protein 99.7 1.1E-15 3.7E-20 153.7 15.9 153 197-402 24-200 (331)
45 4fcw_A Chaperone protein CLPB; 99.6 1.6E-15 5.5E-20 150.5 15.2 160 201-402 18-231 (311)
46 2chq_A Replication factor C sm 99.6 1.2E-15 4.3E-20 151.3 14.3 157 192-404 9-178 (319)
47 3pvs_A Replication-associated 99.6 2.2E-15 7.4E-20 158.0 16.4 151 193-402 19-180 (447)
48 1sxj_A Activator 1 95 kDa subu 99.6 1.6E-15 5.3E-20 162.1 15.2 173 187-402 28-224 (516)
49 1iqp_A RFCS; clamp loader, ext 99.6 6.4E-15 2.2E-19 146.7 16.4 160 187-404 14-186 (327)
50 3bos_A Putative DNA replicatio 99.6 1.9E-15 6.5E-20 143.4 11.1 161 192-402 20-189 (242)
51 1sxj_B Activator 1 37 kDa subu 99.6 9.8E-15 3.3E-19 145.1 16.2 154 193-402 14-181 (323)
52 1jr3_A DNA polymerase III subu 99.6 2.6E-14 8.9E-19 145.2 19.3 181 193-428 9-220 (373)
53 1sxj_D Activator 1 41 kDa subu 99.6 5.9E-15 2E-19 148.8 13.9 154 193-402 30-207 (353)
54 1um8_A ATP-dependent CLP prote 99.6 2.2E-14 7.5E-19 146.9 17.8 175 201-399 22-285 (376)
55 1l8q_A Chromosomal replication 99.6 7.6E-15 2.6E-19 147.1 13.8 164 193-403 4-182 (324)
56 2v1u_A Cell division control p 99.6 1.4E-14 4.9E-19 147.3 15.4 160 198-401 17-215 (387)
57 2p65_A Hypothetical protein PF 99.6 2.3E-15 7.8E-20 137.0 8.5 145 195-388 17-187 (187)
58 1g8p_A Magnesium-chelatase 38 99.6 2.4E-14 8.1E-19 144.3 15.5 156 194-400 18-232 (350)
59 2qby_B CDC6 homolog 3, cell di 99.6 4.3E-14 1.5E-18 144.1 15.9 151 200-401 20-211 (384)
60 1in4_A RUVB, holliday junction 99.5 2.3E-13 7.8E-18 137.3 20.6 192 192-429 17-223 (334)
61 3pxg_A Negative regulator of g 99.5 7.6E-14 2.6E-18 147.3 17.6 147 194-402 174-340 (468)
62 1r6b_X CLPA protein; AAA+, N-t 99.5 5E-14 1.7E-18 157.1 16.9 154 201-401 459-667 (758)
63 3te6_A Regulatory protein SIR3 99.5 1.6E-13 5.5E-18 137.2 18.2 184 233-458 44-292 (318)
64 1qvr_A CLPB protein; coiled co 99.5 4.6E-14 1.6E-18 159.4 15.8 157 195-401 165-346 (854)
65 2z4s_A Chromosomal replication 99.5 5E-14 1.7E-18 147.5 14.4 160 193-402 98-278 (440)
66 2bjv_A PSP operon transcriptio 99.5 4.5E-14 1.5E-18 137.3 12.9 155 197-401 3-195 (265)
67 3pxi_A Negative regulator of g 99.5 7.7E-14 2.6E-18 155.7 16.2 155 200-401 491-676 (758)
68 1sxj_E Activator 1 40 kDa subu 99.5 1.2E-13 4.1E-18 139.6 15.2 183 193-430 7-238 (354)
69 1fnn_A CDC6P, cell division co 99.5 3E-13 1E-17 137.9 18.3 160 198-402 15-208 (389)
70 2qby_A CDC6 homolog 1, cell di 99.5 1.3E-13 4.4E-18 140.0 14.1 159 197-401 17-211 (386)
71 1sxj_C Activator 1 40 kDa subu 99.5 3.3E-13 1.1E-17 136.2 16.9 157 187-401 14-183 (340)
72 3pxi_A Negative regulator of g 99.5 3.1E-13 1.1E-17 150.7 18.0 147 194-402 174-340 (758)
73 1r6b_X CLPA protein; AAA+, N-t 99.5 1.1E-13 3.8E-18 154.3 14.3 158 195-401 181-363 (758)
74 1a5t_A Delta prime, HOLB; zinc 99.5 1.3E-12 4.3E-17 131.8 19.4 151 233-430 23-206 (334)
75 3n70_A Transport activator; si 99.5 1E-13 3.5E-18 122.8 8.4 84 201-297 2-88 (145)
76 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 2.2E-12 7.4E-17 136.7 14.1 146 201-401 23-197 (500)
77 1qvr_A CLPB protein; coiled co 99.4 1.7E-12 5.7E-17 146.7 13.9 155 200-401 558-771 (854)
78 1ojl_A Transcriptional regulat 99.4 1.9E-12 6.5E-17 129.0 12.7 152 201-401 3-191 (304)
79 3co5_A Putative two-component 99.4 5.2E-13 1.8E-17 118.0 6.7 83 201-297 5-87 (143)
80 2gno_A DNA polymerase III, gam 99.4 4.6E-12 1.6E-16 126.2 13.3 122 234-400 18-152 (305)
81 4akg_A Glutathione S-transfera 99.3 6.9E-12 2.4E-16 153.7 15.2 137 234-401 1267-1432(2695)
82 3f9v_A Minichromosome maintena 99.3 2.6E-13 8.9E-18 147.1 1.9 127 236-402 329-492 (595)
83 3ec2_A DNA replication protein 99.3 3.9E-12 1.3E-16 116.3 7.3 94 195-296 5-111 (180)
84 1svm_A Large T antigen; AAA+ f 99.2 5.7E-12 2E-16 128.9 4.4 121 229-386 164-284 (377)
85 1w5s_A Origin recognition comp 99.2 1.4E-10 4.7E-15 119.0 14.6 163 199-401 21-229 (412)
86 1tue_A Replication protein E1; 99.1 1.8E-10 6.3E-15 107.2 8.3 61 230-296 54-114 (212)
87 2w58_A DNAI, primosome compone 99.1 8.9E-11 3.1E-15 109.0 6.2 97 195-297 20-127 (202)
88 3k1j_A LON protease, ATP-depen 99.0 8.4E-10 2.9E-14 119.9 9.2 53 193-260 34-86 (604)
89 2qgz_A Helicase loader, putati 98.9 6.4E-10 2.2E-14 110.9 5.6 95 196-296 120-225 (308)
90 3cmw_A Protein RECA, recombina 98.9 8.8E-10 3E-14 130.1 6.0 147 197-365 1017-1218(1706)
91 3vkg_A Dynein heavy chain, cyt 98.9 2E-08 6.7E-13 124.3 16.0 135 234-401 1304-1470(3245)
92 4akg_A Glutathione S-transfera 98.8 8E-08 2.7E-12 118.2 20.5 125 234-397 645-790 (2695)
93 2vhj_A Ntpase P4, P4; non- hyd 98.8 2.2E-09 7.5E-14 106.8 4.1 115 230-372 119-242 (331)
94 2r2a_A Uncharacterized protein 98.8 4.4E-09 1.5E-13 98.2 5.5 120 235-390 6-156 (199)
95 2fna_A Conserved hypothetical 98.8 8E-08 2.7E-12 95.9 14.9 55 197-268 10-64 (357)
96 2kjq_A DNAA-related protein; s 98.7 1.5E-08 5.1E-13 90.0 7.5 57 234-297 36-95 (149)
97 1u0j_A DNA replication protein 98.7 3.3E-08 1.1E-12 95.9 9.8 58 232-296 102-159 (267)
98 2qen_A Walker-type ATPase; unk 98.6 1E-06 3.5E-11 87.6 18.1 180 196-428 8-245 (350)
99 1ny5_A Transcriptional regulat 98.6 3.9E-07 1.3E-11 93.5 13.4 154 199-401 136-326 (387)
100 3dzd_A Transcriptional regulat 98.5 8.2E-07 2.8E-11 90.5 14.0 152 201-401 130-317 (368)
101 3vkg_A Dynein heavy chain, cyt 98.4 3.7E-06 1.3E-10 104.4 17.7 127 234-399 604-752 (3245)
102 3f8t_A Predicted ATPase involv 98.4 2E-07 6.9E-12 96.9 4.7 140 202-390 215-384 (506)
103 3cmu_A Protein RECA, recombina 98.3 5.3E-07 1.8E-11 107.9 6.5 114 230-365 1423-1563(2050)
104 1jr3_D DNA polymerase III, del 98.2 1.1E-05 3.8E-10 80.8 12.9 124 233-402 17-157 (343)
105 1ye8_A Protein THEP1, hypothet 98.1 9.4E-06 3.2E-10 74.0 9.6 27 236-262 2-28 (178)
106 1z6t_A APAF-1, apoptotic prote 97.8 0.00014 4.9E-09 78.0 14.0 50 196-256 120-169 (591)
107 2cvh_A DNA repair and recombin 97.8 7.5E-05 2.6E-09 69.2 10.0 39 230-268 16-54 (220)
108 3trf_A Shikimate kinase, SK; a 97.6 2.1E-05 7.2E-10 71.2 3.3 33 234-266 5-37 (185)
109 3vaa_A Shikimate kinase, SK; s 97.6 2.7E-05 9.1E-10 71.8 3.4 33 234-266 25-57 (199)
110 3hr8_A Protein RECA; alpha and 97.6 9.9E-05 3.4E-09 74.6 7.5 69 230-298 57-152 (356)
111 2rhm_A Putative kinase; P-loop 97.6 3E-05 1E-09 70.4 3.1 35 231-265 2-36 (193)
112 1qhx_A CPT, protein (chloramph 97.6 2.9E-05 9.9E-10 69.7 2.8 33 235-267 4-36 (178)
113 3kb2_A SPBC2 prophage-derived 97.6 5.4E-05 1.8E-09 67.2 4.6 32 236-267 3-34 (173)
114 3sfz_A APAF-1, apoptotic pepti 97.5 0.00062 2.1E-08 78.9 14.3 52 195-257 119-170 (1249)
115 2z43_A DNA repair and recombin 97.5 5.6E-05 1.9E-09 75.4 4.3 29 230-258 103-131 (324)
116 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.00029 9.8E-09 65.5 8.5 29 230-258 19-47 (235)
117 1via_A Shikimate kinase; struc 97.4 5E-05 1.7E-09 68.2 2.9 30 236-265 6-35 (175)
118 3iij_A Coilin-interacting nucl 97.4 5.7E-05 1.9E-09 68.1 3.1 32 234-265 11-42 (180)
119 2iyv_A Shikimate kinase, SK; t 97.4 6.3E-05 2.2E-09 68.0 3.3 31 236-266 4-34 (184)
120 1zuh_A Shikimate kinase; alpha 97.4 6.4E-05 2.2E-09 67.0 3.2 32 235-266 8-39 (168)
121 1y63_A LMAJ004144AAA protein; 97.4 6.8E-05 2.3E-09 68.2 3.1 33 234-266 10-43 (184)
122 1kag_A SKI, shikimate kinase I 97.4 7.2E-05 2.5E-09 66.8 3.2 31 235-265 5-35 (173)
123 1v5w_A DMC1, meiotic recombina 97.4 0.00019 6.6E-09 72.1 6.6 28 230-257 118-145 (343)
124 1e6c_A Shikimate kinase; phosp 97.3 8.6E-05 2.9E-09 66.2 2.9 32 235-266 3-34 (173)
125 3kw6_A 26S protease regulatory 97.3 7E-05 2.4E-09 58.5 1.9 70 385-454 1-75 (78)
126 1xp8_A RECA protein, recombina 97.3 0.00038 1.3E-08 70.7 7.8 69 230-298 70-165 (366)
127 2cdn_A Adenylate kinase; phosp 97.3 0.00012 4.1E-09 67.2 3.8 31 235-265 21-51 (201)
128 2ze6_A Isopentenyl transferase 97.3 0.00011 3.7E-09 70.6 3.4 32 236-267 3-34 (253)
129 1tev_A UMP-CMP kinase; ploop, 97.3 0.0001 3.6E-09 66.7 3.0 31 235-265 4-34 (196)
130 3lw7_A Adenylate kinase relate 97.3 0.00011 3.6E-09 65.1 2.8 29 236-265 3-31 (179)
131 3cm0_A Adenylate kinase; ATP-b 97.3 0.00011 3.7E-09 66.4 2.8 31 235-265 5-35 (186)
132 2pt5_A Shikimate kinase, SK; a 97.2 0.00013 4.4E-09 64.7 3.0 31 236-266 2-32 (168)
133 3cmu_A Protein RECA, recombina 97.2 0.00044 1.5E-08 83.2 8.3 69 230-298 1077-1172(2050)
134 2orw_A Thymidine kinase; TMTK, 97.2 0.00016 5.5E-09 66.1 3.6 29 235-263 4-35 (184)
135 3t61_A Gluconokinase; PSI-biol 97.2 0.00017 5.7E-09 66.3 3.7 32 235-266 19-50 (202)
136 2c95_A Adenylate kinase 1; tra 97.2 0.00013 4.5E-09 66.2 2.9 33 234-266 9-41 (196)
137 1qf9_A UMP/CMP kinase, protein 97.2 0.00013 4.5E-09 65.9 2.9 32 234-265 6-37 (194)
138 1ly1_A Polynucleotide kinase; 97.2 0.0001 3.4E-09 66.0 1.9 30 235-264 3-33 (181)
139 1kht_A Adenylate kinase; phosp 97.2 0.00012 3.9E-09 66.2 2.3 30 235-264 4-38 (192)
140 1gvn_B Zeta; postsegregational 97.2 0.00025 8.7E-09 69.4 4.8 34 234-267 33-66 (287)
141 3be4_A Adenylate kinase; malar 97.2 0.00013 4.4E-09 68.1 2.5 31 235-265 6-36 (217)
142 3dl0_A Adenylate kinase; phosp 97.2 0.00016 5.3E-09 67.2 3.0 29 237-265 3-31 (216)
143 2bwj_A Adenylate kinase 5; pho 97.2 0.00014 4.8E-09 66.2 2.7 32 234-265 12-43 (199)
144 2zr9_A Protein RECA, recombina 97.2 0.00042 1.4E-08 69.9 6.2 69 230-298 57-152 (349)
145 1aky_A Adenylate kinase; ATP:A 97.2 0.00018 6.2E-09 67.1 3.3 31 235-265 5-35 (220)
146 3fb4_A Adenylate kinase; psych 97.2 0.00017 5.9E-09 66.8 3.1 29 237-265 3-31 (216)
147 1zd8_A GTP:AMP phosphotransfer 97.1 0.00015 5E-09 68.1 2.5 32 234-265 7-38 (227)
148 1pzn_A RAD51, DNA repair and r 97.1 0.00051 1.7E-08 69.2 6.6 30 229-258 126-155 (349)
149 2i1q_A DNA repair and recombin 97.1 0.00026 8.8E-09 70.3 4.3 28 230-257 94-121 (322)
150 2ga8_A Hypothetical 39.9 kDa p 97.1 0.00027 9.2E-09 71.1 4.2 50 206-264 5-54 (359)
151 1knq_A Gluconate kinase; ALFA/ 97.1 0.00023 7.8E-09 63.7 3.3 31 235-265 9-39 (175)
152 1zak_A Adenylate kinase; ATP:A 97.1 0.00018 6E-09 67.3 2.5 32 234-265 5-36 (222)
153 1u94_A RECA protein, recombina 97.1 0.00042 1.4E-08 70.1 5.3 69 230-298 59-154 (356)
154 1ukz_A Uridylate kinase; trans 97.1 0.00021 7.1E-09 65.6 2.8 32 235-266 16-47 (203)
155 1ak2_A Adenylate kinase isoenz 97.1 0.00023 8E-09 67.1 3.2 31 235-265 17-47 (233)
156 3io5_A Recombination and repai 97.1 0.00084 2.9E-08 66.5 7.1 68 230-298 25-124 (333)
157 2vli_A Antibiotic resistance p 97.0 0.0002 6.8E-09 64.4 2.3 29 235-263 6-34 (183)
158 2a5y_B CED-4; apoptosis; HET: 97.0 0.011 3.8E-07 62.9 16.0 44 203-256 131-174 (549)
159 1zp6_A Hypothetical protein AT 97.0 0.00021 7.1E-09 64.8 2.0 33 231-263 6-38 (191)
160 3tlx_A Adenylate kinase 2; str 97.0 0.00031 1.1E-08 66.9 3.2 32 234-265 29-60 (243)
161 2krk_A 26S protease regulatory 97.0 0.00012 4.2E-09 58.4 0.3 72 383-454 7-83 (86)
162 4eun_A Thermoresistant glucoki 97.0 0.00038 1.3E-08 64.0 3.6 31 234-264 29-59 (200)
163 2p5t_B PEZT; postsegregational 97.0 0.00041 1.4E-08 66.4 4.0 35 233-267 31-65 (253)
164 1e4v_A Adenylate kinase; trans 97.0 0.00027 9.1E-09 65.7 2.5 29 237-265 3-31 (214)
165 2r8r_A Sensor protein; KDPD, P 97.0 0.0019 6.6E-08 60.8 8.2 33 235-267 7-42 (228)
166 2pez_A Bifunctional 3'-phospho 96.9 0.00042 1.4E-08 62.3 3.5 32 235-266 6-40 (179)
167 3umf_A Adenylate kinase; rossm 96.9 0.00041 1.4E-08 65.2 3.4 31 234-264 29-59 (217)
168 2pbr_A DTMP kinase, thymidylat 96.9 0.00042 1.4E-08 62.6 3.2 30 237-266 3-35 (195)
169 2xb4_A Adenylate kinase; ATP-b 96.9 0.00037 1.3E-08 65.4 2.9 29 237-265 3-31 (223)
170 3crm_A TRNA delta(2)-isopenten 96.9 0.00039 1.3E-08 69.2 2.8 33 234-266 5-37 (323)
171 2if2_A Dephospho-COA kinase; a 96.8 0.00037 1.3E-08 63.9 2.3 31 236-267 3-33 (204)
172 3sr0_A Adenylate kinase; phosp 96.8 0.00049 1.7E-08 64.1 3.1 28 237-264 3-30 (206)
173 3nwj_A ATSK2; P loop, shikimat 96.8 0.00047 1.6E-08 66.2 2.8 33 234-266 48-80 (250)
174 3e1s_A Exodeoxyribonuclease V, 96.8 0.0014 4.7E-08 70.5 6.7 31 235-265 205-238 (574)
175 2jaq_A Deoxyguanosine kinase; 96.8 0.00053 1.8E-08 62.5 3.0 28 237-264 3-30 (205)
176 1cke_A CK, MSSA, protein (cyti 96.8 0.00055 1.9E-08 63.8 3.1 30 235-264 6-35 (227)
177 3lda_A DNA repair protein RAD5 96.8 0.0015 5.2E-08 67.0 6.7 28 230-257 174-201 (400)
178 3ake_A Cytidylate kinase; CMP 96.8 0.00054 1.9E-08 62.7 3.1 31 236-266 4-34 (208)
179 1nks_A Adenylate kinase; therm 96.8 0.0003 1E-08 63.5 1.3 24 236-259 3-26 (194)
180 3upu_A ATP-dependent DNA helic 96.8 0.0012 4.1E-08 68.8 5.9 54 192-258 16-69 (459)
181 2bbw_A Adenylate kinase 4, AK4 96.8 0.00064 2.2E-08 64.6 3.5 31 234-264 27-57 (246)
182 1vt4_I APAF-1 related killer D 96.8 0.0077 2.6E-07 68.4 12.5 43 203-257 131-173 (1221)
183 1g5t_A COB(I)alamin adenosyltr 96.7 0.0025 8.4E-08 58.8 7.0 109 236-386 30-179 (196)
184 1jjv_A Dephospho-COA kinase; P 96.7 0.00051 1.8E-08 63.1 2.4 30 236-266 4-33 (206)
185 2z0h_A DTMP kinase, thymidylat 96.7 0.00072 2.5E-08 61.3 3.2 29 237-265 3-34 (197)
186 2grj_A Dephospho-COA kinase; T 96.7 0.00065 2.2E-08 62.5 2.9 32 235-266 13-44 (192)
187 2v54_A DTMP kinase, thymidylat 96.7 0.00061 2.1E-08 62.2 2.6 33 235-267 5-38 (204)
188 3r20_A Cytidylate kinase; stru 96.7 0.00079 2.7E-08 63.9 3.3 31 235-265 10-40 (233)
189 1n0w_A DNA repair protein RAD5 96.7 0.0013 4.5E-08 61.6 4.6 28 230-257 20-47 (243)
190 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.00079 2.7E-08 64.7 2.9 31 235-265 5-38 (260)
191 2wwf_A Thymidilate kinase, put 96.6 0.00045 1.5E-08 63.6 1.0 31 235-265 11-41 (212)
192 3uie_A Adenylyl-sulfate kinase 96.6 0.0012 4.2E-08 60.5 3.7 26 234-259 25-50 (200)
193 3cmw_A Protein RECA, recombina 96.6 0.0022 7.5E-08 76.3 6.6 70 229-298 29-125 (1706)
194 2h92_A Cytidylate kinase; ross 96.5 0.0011 3.7E-08 61.5 3.2 32 235-266 4-35 (219)
195 2plr_A DTMP kinase, probable t 96.5 0.00094 3.2E-08 61.2 2.7 27 235-261 5-31 (213)
196 1uf9_A TT1252 protein; P-loop, 96.5 0.00098 3.4E-08 60.7 2.5 31 235-266 9-39 (203)
197 4b3f_X DNA-binding protein smu 96.5 0.0026 8.9E-08 69.3 6.1 56 196-266 182-240 (646)
198 1vht_A Dephospho-COA kinase; s 96.4 0.0012 4E-08 61.3 2.8 31 235-266 5-35 (218)
199 4a74_A DNA repair and recombin 96.4 0.0021 7.2E-08 59.6 4.5 29 230-258 21-49 (231)
200 1q3t_A Cytidylate kinase; nucl 96.4 0.0015 5.1E-08 61.6 3.3 30 236-265 18-47 (236)
201 1ltq_A Polynucleotide kinase; 96.4 0.0011 3.7E-08 64.7 2.3 32 235-266 3-35 (301)
202 1nn5_A Similar to deoxythymidy 96.4 0.00081 2.8E-08 61.9 1.2 29 235-263 10-38 (215)
203 2qor_A Guanylate kinase; phosp 96.3 0.0016 5.6E-08 59.8 3.0 28 232-259 10-37 (204)
204 1g41_A Heat shock protein HSLU 96.3 0.0049 1.7E-07 63.9 6.8 101 271-397 235-346 (444)
205 4e22_A Cytidylate kinase; P-lo 96.3 0.002 6.7E-08 61.6 3.6 30 235-264 28-57 (252)
206 1uj2_A Uridine-cytidine kinase 96.3 0.0017 5.9E-08 61.9 3.1 29 235-263 23-51 (252)
207 2bdt_A BH3686; alpha-beta prot 96.3 0.0017 5.6E-08 58.8 2.9 25 236-260 4-28 (189)
208 2c9o_A RUVB-like 1; hexameric 96.3 0.0092 3.1E-07 62.1 8.9 59 336-402 310-381 (456)
209 2b8t_A Thymidine kinase; deoxy 96.3 0.0051 1.8E-07 57.9 6.3 62 236-297 14-101 (223)
210 2iut_A DNA translocase FTSK; n 96.3 0.023 8E-07 60.5 12.0 41 355-397 378-420 (574)
211 2qt1_A Nicotinamide riboside k 96.3 0.0011 3.9E-08 60.9 1.7 32 235-266 22-54 (207)
212 1kgd_A CASK, peripheral plasma 96.3 0.0018 6E-08 58.5 2.8 26 234-259 5-30 (180)
213 3a8t_A Adenylate isopentenyltr 96.2 0.0013 4.5E-08 65.7 1.8 35 235-269 41-75 (339)
214 3zvl_A Bifunctional polynucleo 96.2 0.0016 5.5E-08 67.1 2.5 33 234-266 258-290 (416)
215 1rz3_A Hypothetical protein rb 96.2 0.0047 1.6E-07 56.6 5.4 32 235-266 23-57 (201)
216 3foz_A TRNA delta(2)-isopenten 96.2 0.0023 7.8E-08 63.2 3.1 33 234-266 10-42 (316)
217 2j41_A Guanylate kinase; GMP, 96.1 0.0019 6.5E-08 58.9 2.3 25 234-258 6-30 (207)
218 1kao_A RAP2A; GTP-binding prot 96.1 0.013 4.5E-07 50.5 7.6 23 235-257 4-26 (167)
219 2qmh_A HPR kinase/phosphorylas 96.1 0.0017 5.8E-08 60.0 1.8 32 234-266 34-65 (205)
220 3fdi_A Uncharacterized protein 96.1 0.0023 7.8E-08 59.2 2.7 30 235-264 7-36 (201)
221 2dr3_A UPF0273 protein PH0284; 96.1 0.0023 8E-08 59.9 2.8 37 230-266 19-58 (247)
222 2f6r_A COA synthase, bifunctio 96.1 0.0021 7.1E-08 62.6 2.5 31 235-266 76-106 (281)
223 1ex7_A Guanylate kinase; subst 96.1 0.003 1E-07 57.7 3.3 26 235-260 2-27 (186)
224 3d3q_A TRNA delta(2)-isopenten 96.1 0.0023 7.8E-08 64.1 2.6 32 235-266 8-39 (340)
225 1m7g_A Adenylylsulfate kinase; 96.1 0.0029 9.8E-08 58.5 3.1 26 234-259 25-50 (211)
226 2yvu_A Probable adenylyl-sulfa 96.0 0.0028 9.5E-08 57.2 2.9 26 234-259 13-38 (186)
227 2ius_A DNA translocase FTSK; n 96.0 0.029 9.9E-07 59.2 11.0 42 355-398 332-375 (512)
228 3c8u_A Fructokinase; YP_612366 96.0 0.0038 1.3E-07 57.6 3.8 26 234-259 22-47 (208)
229 2ehv_A Hypothetical protein PH 96.0 0.0024 8.1E-08 60.0 2.2 26 230-255 26-51 (251)
230 3tau_A Guanylate kinase, GMP k 96.0 0.0026 8.9E-08 58.8 2.4 27 234-260 8-34 (208)
231 2zts_A Putative uncharacterize 95.9 0.0036 1.2E-07 58.7 3.3 38 230-267 26-67 (251)
232 3aji_B S6C, proteasome (prosom 95.9 0.0038 1.3E-07 49.0 2.6 70 388-457 2-76 (83)
233 3gmt_A Adenylate kinase; ssgci 95.9 0.0037 1.3E-07 59.1 2.9 30 236-265 10-39 (230)
234 3exa_A TRNA delta(2)-isopenten 95.8 0.0036 1.2E-07 61.9 2.7 32 235-266 4-35 (322)
235 3tr0_A Guanylate kinase, GMP k 95.8 0.0039 1.3E-07 56.8 2.8 25 235-259 8-32 (205)
236 1lvg_A Guanylate kinase, GMP k 95.8 0.0039 1.3E-07 57.2 2.6 26 234-259 4-29 (198)
237 1nlf_A Regulatory protein REPA 95.7 0.0029 1E-07 61.1 1.7 29 230-258 26-54 (279)
238 3a00_A Guanylate kinase, GMP k 95.7 0.004 1.4E-07 56.4 2.5 25 235-259 2-26 (186)
239 2fz4_A DNA repair protein RAD2 95.7 0.0079 2.7E-07 56.8 4.6 30 236-265 110-139 (237)
240 2v9p_A Replication protein E1; 95.7 0.005 1.7E-07 60.8 3.2 34 229-262 121-154 (305)
241 2px0_A Flagellar biosynthesis 95.7 0.013 4.5E-07 57.4 6.3 59 234-292 105-189 (296)
242 3b9q_A Chloroplast SRP recepto 95.7 0.0054 1.9E-07 60.4 3.5 53 206-258 70-124 (302)
243 3asz_A Uridine kinase; cytidin 95.7 0.0039 1.3E-07 57.3 2.2 25 235-259 7-31 (211)
244 1z0j_A RAB-22, RAS-related pro 95.6 0.0096 3.3E-07 51.8 4.5 24 235-258 7-30 (170)
245 4eaq_A DTMP kinase, thymidylat 95.6 0.0067 2.3E-07 57.1 3.6 28 236-263 28-57 (229)
246 2ce2_X GTPase HRAS; signaling 95.6 0.019 6.6E-07 49.3 6.3 22 236-257 5-26 (166)
247 1u8z_A RAS-related protein RAL 95.6 0.025 8.7E-07 48.7 7.0 23 235-257 5-27 (168)
248 1htw_A HI0065; nucleotide-bind 95.6 0.0065 2.2E-07 53.9 3.2 27 232-258 31-57 (158)
249 3kl4_A SRP54, signal recogniti 95.5 0.0063 2.2E-07 62.9 3.4 61 206-266 69-132 (433)
250 1cr0_A DNA primase/helicase; R 95.5 0.0047 1.6E-07 60.1 2.3 30 229-258 30-59 (296)
251 1z6g_A Guanylate kinase; struc 95.5 0.0056 1.9E-07 57.1 2.7 25 234-258 23-47 (218)
252 1ek0_A Protein (GTP-binding pr 95.5 0.011 3.9E-07 51.2 4.5 24 235-258 4-27 (170)
253 3hdt_A Putative kinase; struct 95.5 0.0055 1.9E-07 57.6 2.5 31 235-265 15-45 (223)
254 2a9k_A RAS-related protein RAL 95.5 0.03 1E-06 49.3 7.3 23 235-257 19-41 (187)
255 4dsu_A GTPase KRAS, isoform 2B 95.4 0.02 7E-07 50.6 6.1 24 235-258 5-28 (189)
256 1x6v_B Bifunctional 3'-phospho 95.4 0.0077 2.6E-07 65.1 3.8 32 235-266 53-87 (630)
257 3eph_A TRNA isopentenyltransfe 95.4 0.0052 1.8E-07 62.8 2.2 32 234-265 2-33 (409)
258 3t1o_A Gliding protein MGLA; G 95.4 0.032 1.1E-06 49.6 7.4 24 235-258 15-38 (198)
259 3jvv_A Twitching mobility prot 95.4 0.016 5.4E-07 58.4 5.7 23 236-258 125-147 (356)
260 1nrj_B SR-beta, signal recogni 95.4 0.012 4.1E-07 53.9 4.5 25 234-258 12-36 (218)
261 3ney_A 55 kDa erythrocyte memb 95.4 0.0073 2.5E-07 55.7 3.0 26 234-259 19-44 (197)
262 3bc1_A RAS-related protein RAB 95.4 0.022 7.5E-07 50.5 6.1 24 234-257 11-34 (195)
263 2bov_A RAla, RAS-related prote 95.4 0.036 1.2E-06 49.9 7.6 23 235-257 15-37 (206)
264 1znw_A Guanylate kinase, GMP k 95.4 0.0067 2.3E-07 55.8 2.7 26 234-259 20-45 (207)
265 3dm5_A SRP54, signal recogniti 95.4 0.0072 2.5E-07 62.6 3.1 60 206-266 73-135 (443)
266 2v3c_C SRP54, signal recogniti 95.3 0.01 3.4E-07 61.4 4.1 34 234-267 99-135 (432)
267 1r8s_A ADP-ribosylation factor 95.3 0.021 7.1E-07 49.4 5.6 21 237-257 3-23 (164)
268 2og2_A Putative signal recogni 95.3 0.0075 2.6E-07 60.8 3.0 53 206-258 127-181 (359)
269 3q72_A GTP-binding protein RAD 95.3 0.013 4.4E-07 50.9 4.1 21 236-256 4-24 (166)
270 3vlf_B 26S protease regulatory 95.3 0.0026 8.7E-08 50.8 -0.5 67 388-454 2-73 (88)
271 2oil_A CATX-8, RAS-related pro 95.3 0.017 5.9E-07 51.7 5.1 23 235-257 26-48 (193)
272 1r2q_A RAS-related protein RAB 95.3 0.017 5.8E-07 50.1 4.8 23 235-257 7-29 (170)
273 3bh0_A DNAB-like replicative h 95.2 0.01 3.4E-07 58.7 3.6 37 230-266 64-103 (315)
274 2nzj_A GTP-binding protein REM 95.2 0.021 7E-07 49.9 5.3 23 235-257 5-27 (175)
275 1gtv_A TMK, thymidylate kinase 95.2 0.0035 1.2E-07 57.5 0.1 23 237-259 3-25 (214)
276 3con_A GTPase NRAS; structural 95.1 0.024 8.1E-07 50.6 5.6 24 235-258 22-45 (190)
277 1w4r_A Thymidine kinase; type 95.1 0.016 5.5E-07 53.2 4.4 31 235-265 21-54 (195)
278 2jeo_A Uridine-cytidine kinase 95.1 0.0081 2.8E-07 56.8 2.5 27 236-262 27-53 (245)
279 1vma_A Cell division protein F 95.1 0.0081 2.8E-07 59.3 2.5 58 208-266 79-139 (306)
280 1s96_A Guanylate kinase, GMP k 95.1 0.0091 3.1E-07 55.9 2.7 28 232-259 14-41 (219)
281 2eyu_A Twitching motility prot 95.1 0.01 3.5E-07 57.1 3.1 25 234-258 25-49 (261)
282 3tkl_A RAS-related protein RAB 95.1 0.019 6.4E-07 51.4 4.6 23 235-257 17-39 (196)
283 2efe_B Small GTP-binding prote 95.0 0.021 7.2E-07 50.2 4.9 23 235-257 13-35 (181)
284 3thx_B DNA mismatch repair pro 95.0 0.059 2E-06 60.8 9.5 64 233-296 672-763 (918)
285 2i3b_A HCR-ntpase, human cance 95.0 0.0089 3.1E-07 54.6 2.4 23 236-258 3-25 (189)
286 2ged_A SR-beta, signal recogni 95.0 0.017 6E-07 51.6 4.3 27 232-258 46-72 (193)
287 2yhs_A FTSY, cell division pro 95.0 0.0084 2.9E-07 62.9 2.4 24 235-258 294-317 (503)
288 1x3s_A RAS-related protein RAB 95.0 0.03 1E-06 49.8 5.8 23 235-257 16-38 (195)
289 1z0f_A RAB14, member RAS oncog 95.0 0.027 9.1E-07 49.3 5.3 25 234-258 15-39 (179)
290 2gk6_A Regulator of nonsense t 94.9 0.015 5.3E-07 62.9 4.4 24 235-258 196-219 (624)
291 3e70_C DPA, signal recognition 94.9 0.02 7E-07 56.9 4.9 52 207-258 98-153 (328)
292 2atv_A RERG, RAS-like estrogen 94.9 0.042 1.4E-06 49.3 6.7 24 234-257 28-51 (196)
293 2erx_A GTP-binding protein DI- 94.9 0.018 6.1E-07 50.0 4.0 21 236-256 5-25 (172)
294 4gp7_A Metallophosphoesterase; 94.9 0.0089 3E-07 53.4 2.0 20 234-253 9-28 (171)
295 2ewv_A Twitching motility prot 94.9 0.013 4.5E-07 59.3 3.4 27 232-258 134-160 (372)
296 1c1y_A RAS-related protein RAP 94.9 0.016 5.6E-07 50.0 3.6 22 236-257 5-26 (167)
297 2xau_A PRE-mRNA-splicing facto 94.9 0.039 1.3E-06 61.2 7.4 23 235-257 110-132 (773)
298 1zu4_A FTSY; GTPase, signal re 94.8 0.013 4.5E-07 58.1 3.1 36 233-268 104-142 (320)
299 4f4c_A Multidrug resistance pr 94.8 0.026 9E-07 66.4 6.1 28 232-259 442-469 (1321)
300 3dz8_A RAS-related protein RAB 94.8 0.023 8E-07 50.9 4.4 24 235-258 24-47 (191)
301 2r6a_A DNAB helicase, replicat 94.7 0.017 5.7E-07 60.1 3.8 37 230-266 199-239 (454)
302 1np6_A Molybdopterin-guanine d 94.7 0.014 4.7E-07 52.7 2.7 25 234-258 6-30 (174)
303 1p9r_A General secretion pathw 94.7 0.03 1E-06 57.6 5.5 49 196-259 143-192 (418)
304 1a7j_A Phosphoribulokinase; tr 94.7 0.0057 1.9E-07 59.8 0.0 35 236-270 7-44 (290)
305 1c9k_A COBU, adenosylcobinamid 94.7 0.0095 3.2E-07 54.1 1.5 33 237-270 2-34 (180)
306 1wb9_A DNA mismatch repair pro 94.7 0.11 3.8E-06 57.8 10.3 63 234-296 607-697 (800)
307 2axn_A 6-phosphofructo-2-kinas 94.6 0.014 4.8E-07 61.8 2.9 27 234-260 35-61 (520)
308 3lnc_A Guanylate kinase, GMP k 94.6 0.0076 2.6E-07 56.4 0.8 25 235-259 28-53 (231)
309 1odf_A YGR205W, hypothetical 3 94.6 0.017 5.9E-07 56.4 3.3 27 234-260 31-57 (290)
310 2q6t_A DNAB replication FORK h 94.6 0.017 6E-07 59.8 3.5 38 230-267 196-237 (444)
311 3tqf_A HPR(Ser) kinase; transf 94.5 0.012 4E-07 53.1 1.8 29 234-263 16-44 (181)
312 3kkq_A RAS-related protein M-R 94.5 0.033 1.1E-06 49.2 4.8 23 235-257 19-41 (183)
313 4edh_A DTMP kinase, thymidylat 94.5 0.018 6.1E-07 53.6 3.1 29 236-264 8-39 (213)
314 2f7s_A C25KG, RAS-related prot 94.4 0.053 1.8E-06 49.5 6.1 23 235-257 26-48 (217)
315 1fzq_A ADP-ribosylation factor 94.4 0.027 9.4E-07 50.1 4.0 24 234-257 16-39 (181)
316 4i1u_A Dephospho-COA kinase; s 94.4 0.018 6.1E-07 53.6 2.7 31 236-267 11-41 (210)
317 2oap_1 GSPE-2, type II secreti 94.3 0.012 4.2E-07 62.1 1.7 26 234-259 260-285 (511)
318 2wjy_A Regulator of nonsense t 94.3 0.026 8.8E-07 62.9 4.4 24 235-258 372-395 (800)
319 1xjc_A MOBB protein homolog; s 94.3 0.025 8.4E-07 50.8 3.4 32 235-266 5-39 (169)
320 1rj9_A FTSY, signal recognitio 94.3 0.02 7E-07 56.3 3.1 25 234-258 102-126 (304)
321 3kta_A Chromosome segregation 94.3 0.016 5.3E-07 51.8 2.1 25 236-260 28-52 (182)
322 2p5s_A RAS and EF-hand domain 94.3 0.034 1.2E-06 50.2 4.4 24 234-257 28-51 (199)
323 2fg5_A RAB-22B, RAS-related pr 94.3 0.03 1E-06 50.2 4.0 23 235-257 24-46 (192)
324 1sq5_A Pantothenate kinase; P- 94.2 0.017 5.7E-07 56.9 2.3 24 236-259 82-105 (308)
325 1m8p_A Sulfate adenylyltransfe 94.2 0.018 6.1E-07 61.8 2.6 32 235-266 397-432 (573)
326 1zd9_A ADP-ribosylation factor 94.2 0.024 8.2E-07 50.7 3.1 23 235-257 23-45 (188)
327 1zbd_A Rabphilin-3A; G protein 94.2 0.04 1.4E-06 49.7 4.7 24 234-257 8-31 (203)
328 2hup_A RAS-related protein RAB 94.2 0.051 1.8E-06 49.2 5.4 23 235-257 30-52 (201)
329 3thx_A DNA mismatch repair pro 94.2 0.11 3.8E-06 58.7 9.1 63 234-296 662-752 (934)
330 2h57_A ADP-ribosylation factor 94.2 0.012 4.2E-07 52.6 1.0 24 235-258 22-45 (190)
331 2fh5_B SR-beta, signal recogni 94.2 0.033 1.1E-06 50.8 4.0 24 234-257 7-30 (214)
332 4a1f_A DNAB helicase, replicat 94.1 0.023 7.9E-07 56.8 3.1 37 230-266 42-81 (338)
333 3tqc_A Pantothenate kinase; bi 94.1 0.052 1.8E-06 53.8 5.6 24 236-259 94-117 (321)
334 1sky_E F1-ATPase, F1-ATP synth 94.1 0.051 1.8E-06 56.5 5.7 23 236-258 153-175 (473)
335 1bif_A 6-phosphofructo-2-kinas 94.1 0.014 4.6E-07 61.0 1.4 27 234-260 39-65 (469)
336 3aez_A Pantothenate kinase; tr 94.1 0.022 7.5E-07 56.3 2.8 25 235-259 91-115 (312)
337 1lw7_A Transcriptional regulat 94.1 0.024 8.1E-07 57.1 3.0 28 234-261 170-197 (365)
338 1p5z_B DCK, deoxycytidine kina 94.0 0.0088 3E-07 57.2 -0.2 29 235-263 25-54 (263)
339 2ocp_A DGK, deoxyguanosine kin 94.0 0.02 7E-07 53.8 2.4 25 235-259 3-27 (241)
340 2b6h_A ADP-ribosylation factor 94.0 0.062 2.1E-06 48.3 5.5 23 234-256 29-51 (192)
341 1z2a_A RAS-related protein RAB 94.0 0.02 6.7E-07 49.6 2.1 24 234-257 5-28 (168)
342 2gf0_A GTP-binding protein DI- 94.0 0.038 1.3E-06 49.4 4.0 23 235-257 9-31 (199)
343 3v9p_A DTMP kinase, thymidylat 94.0 0.022 7.5E-07 53.7 2.5 23 236-258 27-49 (227)
344 2f9l_A RAB11B, member RAS onco 94.0 0.02 6.9E-07 51.8 2.2 24 235-258 6-29 (199)
345 1g8f_A Sulfate adenylyltransfe 94.0 0.023 8E-07 59.9 2.9 26 235-260 396-421 (511)
346 2dyk_A GTP-binding protein; GT 93.9 0.022 7.6E-07 49.0 2.3 22 236-257 3-24 (161)
347 2j37_W Signal recognition part 93.9 0.024 8.2E-07 59.7 2.9 34 234-267 101-137 (504)
348 1q57_A DNA primase/helicase; d 93.9 0.029 9.8E-07 59.0 3.3 37 230-266 238-278 (503)
349 2il1_A RAB12; G-protein, GDP, 93.8 0.032 1.1E-06 50.1 3.3 22 235-256 27-48 (192)
350 3bgw_A DNAB-like replicative h 93.8 0.028 9.5E-07 58.3 3.2 38 230-267 193-233 (444)
351 4f4c_A Multidrug resistance pr 93.8 0.042 1.4E-06 64.7 5.0 27 232-258 1103-1129(1321)
352 1oix_A RAS-related protein RAB 93.8 0.02 6.8E-07 51.6 1.8 23 236-258 31-53 (191)
353 2ew1_A RAS-related protein RAB 93.7 0.038 1.3E-06 50.4 3.4 23 235-257 27-49 (201)
354 1qhl_A Protein (cell division 93.7 0.022 7.4E-07 53.7 1.8 23 237-259 30-52 (227)
355 1w36_D RECD, exodeoxyribonucle 93.6 0.028 9.6E-07 60.7 2.8 25 234-258 164-188 (608)
356 2xxa_A Signal recognition part 93.6 0.032 1.1E-06 57.7 3.1 36 233-268 99-138 (433)
357 2cbz_A Multidrug resistance-as 93.6 0.019 6.5E-07 54.3 1.2 25 234-258 31-55 (237)
358 2onk_A Molybdate/tungstate ABC 93.6 0.023 7.8E-07 53.9 1.8 25 235-259 25-49 (240)
359 1ewq_A DNA mismatch repair pro 93.6 0.1 3.4E-06 57.8 7.1 25 234-258 576-600 (765)
360 3tif_A Uncharacterized ABC tra 93.5 0.02 6.7E-07 54.1 1.2 25 235-259 32-56 (235)
361 3b85_A Phosphate starvation-in 93.5 0.02 6.8E-07 53.1 1.2 23 235-257 23-45 (208)
362 2ffh_A Protein (FFH); SRP54, s 93.5 0.054 1.8E-06 55.8 4.5 59 207-267 73-134 (425)
363 2wji_A Ferrous iron transport 93.4 0.023 7.8E-07 49.8 1.4 22 236-257 5-26 (165)
364 1wms_A RAB-9, RAB9, RAS-relate 93.4 0.03 1E-06 49.0 2.3 23 235-257 8-30 (177)
365 3lv8_A DTMP kinase, thymidylat 93.4 0.028 9.7E-07 53.2 2.1 25 235-259 28-52 (236)
366 3tmk_A Thymidylate kinase; pho 93.4 0.035 1.2E-06 51.8 2.7 27 236-262 7-33 (216)
367 4dkx_A RAS-related protein RAB 93.4 0.058 2E-06 50.1 4.2 21 236-256 15-35 (216)
368 1z08_A RAS-related protein RAB 93.4 0.032 1.1E-06 48.4 2.2 24 234-257 6-29 (170)
369 2www_A Methylmalonic aciduria 93.3 0.047 1.6E-06 54.7 3.7 23 236-258 76-98 (349)
370 3sop_A Neuronal-specific septi 93.3 0.027 9.1E-07 54.4 1.8 24 236-259 4-27 (270)
371 3p32_A Probable GTPase RV1496/ 93.3 0.042 1.4E-06 55.1 3.4 32 235-266 80-114 (355)
372 1ky3_A GTP-binding protein YPT 93.3 0.033 1.1E-06 48.8 2.3 24 234-257 8-31 (182)
373 2pcj_A ABC transporter, lipopr 93.3 0.017 5.9E-07 54.1 0.4 25 235-259 31-55 (224)
374 2zej_A Dardarin, leucine-rich 93.2 0.021 7.3E-07 50.9 0.9 21 236-256 4-24 (184)
375 1sgw_A Putative ABC transporte 93.2 0.024 8.2E-07 52.8 1.2 25 235-259 36-60 (214)
376 1g16_A RAS-related protein SEC 93.2 0.029 9.9E-07 48.6 1.7 23 235-257 4-26 (170)
377 2f1r_A Molybdopterin-guanine d 93.2 0.023 7.9E-07 51.0 1.1 24 236-259 4-27 (171)
378 1zj6_A ADP-ribosylation factor 93.2 0.035 1.2E-06 49.4 2.3 23 234-256 16-38 (187)
379 3t34_A Dynamin-related protein 93.1 0.2 7E-06 50.0 8.2 22 236-257 36-57 (360)
380 1j8m_F SRP54, signal recogniti 93.1 0.034 1.2E-06 54.5 2.3 35 234-268 98-135 (297)
381 3cr8_A Sulfate adenylyltranfer 93.1 0.029 9.8E-07 59.8 1.9 25 235-259 370-394 (552)
382 1b0u_A Histidine permease; ABC 93.1 0.025 8.6E-07 54.3 1.3 25 235-259 33-57 (262)
383 1mv5_A LMRA, multidrug resista 93.1 0.024 8.3E-07 53.7 1.1 25 234-258 28-52 (243)
384 2pze_A Cystic fibrosis transme 93.1 0.021 7.1E-07 53.7 0.6 25 235-259 35-59 (229)
385 2d2e_A SUFC protein; ABC-ATPas 93.0 0.031 1.1E-06 53.2 1.7 23 235-257 30-52 (250)
386 2wjg_A FEOB, ferrous iron tran 93.0 0.032 1.1E-06 49.5 1.7 23 235-257 8-30 (188)
387 2hxs_A RAB-26, RAS-related pro 93.0 0.034 1.2E-06 48.7 1.9 23 235-257 7-29 (178)
388 2zu0_C Probable ATP-dependent 93.0 0.032 1.1E-06 53.7 1.8 24 235-258 47-70 (267)
389 2xzl_A ATP-dependent helicase 92.9 0.039 1.3E-06 61.5 2.6 24 235-258 376-399 (802)
390 1f2t_A RAD50 ABC-ATPase; DNA d 92.9 0.038 1.3E-06 48.2 2.1 23 236-258 25-47 (149)
391 2ghi_A Transport protein; mult 92.9 0.027 9.3E-07 54.0 1.2 26 234-259 46-71 (260)
392 1upt_A ARL1, ADP-ribosylation 92.9 0.04 1.4E-06 47.8 2.2 24 234-257 7-30 (171)
393 3b1v_A Ferrous iron uptake tra 92.9 0.081 2.8E-06 51.0 4.6 23 235-257 4-26 (272)
394 3clv_A RAB5 protein, putative; 92.9 0.04 1.4E-06 49.1 2.3 23 235-257 8-30 (208)
395 2pt7_A CAG-ALFA; ATPase, prote 92.9 0.038 1.3E-06 54.9 2.3 26 234-259 171-196 (330)
396 3q85_A GTP-binding protein REM 92.9 0.039 1.3E-06 47.9 2.0 21 236-256 4-24 (169)
397 1g6h_A High-affinity branched- 92.9 0.025 8.6E-07 54.1 0.9 25 235-259 34-58 (257)
398 2olj_A Amino acid ABC transpor 92.9 0.029 9.9E-07 54.0 1.3 25 235-259 51-75 (263)
399 1tf7_A KAIC; homohexamer, hexa 92.8 0.033 1.1E-06 58.9 1.8 29 230-258 277-305 (525)
400 2lkc_A Translation initiation 92.8 0.045 1.5E-06 47.9 2.4 24 234-257 8-31 (178)
401 3gfo_A Cobalt import ATP-bindi 92.8 0.029 1E-06 54.4 1.2 23 236-258 36-58 (275)
402 2y8e_A RAB-protein 6, GH09086P 92.8 0.036 1.2E-06 48.4 1.7 23 235-257 15-37 (179)
403 2gza_A Type IV secretion syste 92.8 0.022 7.4E-07 57.4 0.3 26 234-259 175-200 (361)
404 2ixe_A Antigen peptide transpo 92.8 0.03 1E-06 54.1 1.2 25 235-259 46-70 (271)
405 1z47_A CYSA, putative ABC-tran 92.8 0.034 1.2E-06 55.9 1.7 23 236-258 43-65 (355)
406 2ff7_A Alpha-hemolysin translo 92.8 0.027 9.1E-07 53.6 0.9 25 235-259 36-60 (247)
407 1ji0_A ABC transporter; ATP bi 92.7 0.03 1E-06 53.0 1.2 24 236-259 34-57 (240)
408 2o8b_B DNA mismatch repair pro 92.7 0.13 4.4E-06 58.8 6.6 22 234-255 789-810 (1022)
409 1tf7_A KAIC; homohexamer, hexa 92.7 0.034 1.2E-06 58.8 1.7 29 230-258 35-65 (525)
410 3d31_A Sulfate/molybdate ABC t 92.7 0.035 1.2E-06 55.7 1.7 24 235-258 27-50 (348)
411 3rlf_A Maltose/maltodextrin im 92.7 0.036 1.2E-06 56.3 1.8 23 236-258 31-53 (381)
412 2qi9_C Vitamin B12 import ATP- 92.7 0.025 8.6E-07 53.9 0.6 26 235-260 27-52 (249)
413 3ld9_A DTMP kinase, thymidylat 92.7 0.047 1.6E-06 51.2 2.4 25 236-260 23-47 (223)
414 3llu_A RAS-related GTP-binding 92.7 0.11 3.7E-06 46.7 4.8 25 234-258 20-44 (196)
415 3fvq_A Fe(3+) IONS import ATP- 92.6 0.031 1.1E-06 56.3 1.2 23 236-258 32-54 (359)
416 2it1_A 362AA long hypothetical 92.6 0.037 1.3E-06 55.8 1.8 23 236-258 31-53 (362)
417 1yrb_A ATP(GTP)binding protein 92.6 0.062 2.1E-06 50.7 3.3 31 236-266 16-48 (262)
418 2qm8_A GTPase/ATPase; G protei 92.6 0.046 1.6E-06 54.5 2.4 24 235-258 56-79 (337)
419 2ihy_A ABC transporter, ATP-bi 92.6 0.029 9.9E-07 54.5 0.9 24 236-259 49-72 (279)
420 1vpl_A ABC transporter, ATP-bi 92.6 0.033 1.1E-06 53.3 1.3 24 235-258 42-65 (256)
421 2yyz_A Sugar ABC transporter, 92.5 0.038 1.3E-06 55.6 1.7 23 236-258 31-53 (359)
422 1v43_A Sugar-binding transport 92.5 0.04 1.4E-06 55.8 1.8 24 235-258 38-61 (372)
423 2fn4_A P23, RAS-related protei 92.5 0.042 1.4E-06 48.1 1.8 23 235-257 10-32 (181)
424 2yz2_A Putative ABC transporte 92.5 0.034 1.2E-06 53.5 1.2 24 235-258 34-57 (266)
425 1m7b_A RND3/RHOE small GTP-bin 92.5 0.041 1.4E-06 48.9 1.7 24 234-257 7-30 (184)
426 4tmk_A Protein (thymidylate ki 92.5 0.043 1.5E-06 51.0 1.9 23 236-258 5-27 (213)
427 2bme_A RAB4A, RAS-related prot 92.5 0.042 1.4E-06 48.6 1.7 23 235-257 11-33 (186)
428 1g29_1 MALK, maltose transport 92.5 0.039 1.3E-06 55.8 1.7 24 235-258 30-53 (372)
429 2gf9_A RAS-related protein RAB 92.4 0.05 1.7E-06 48.5 2.2 23 235-257 23-45 (189)
430 2zj8_A DNA helicase, putative 92.4 0.29 9.9E-06 53.6 8.7 18 234-251 39-56 (720)
431 2g6b_A RAS-related protein RAB 92.4 0.052 1.8E-06 47.6 2.2 23 235-257 11-33 (180)
432 2wsm_A Hydrogenase expression/ 92.4 0.046 1.6E-06 50.1 1.9 25 235-259 31-55 (221)
433 2nq2_C Hypothetical ABC transp 92.3 0.033 1.1E-06 53.2 0.9 24 235-258 32-55 (253)
434 3tw8_B RAS-related protein RAB 92.3 0.048 1.6E-06 47.7 1.9 23 234-256 9-31 (181)
435 2gj8_A MNME, tRNA modification 92.3 0.038 1.3E-06 48.9 1.2 23 235-257 5-27 (172)
436 4g1u_C Hemin import ATP-bindin 92.2 0.032 1.1E-06 53.7 0.7 25 235-259 38-62 (266)
437 2iwr_A Centaurin gamma 1; ANK 92.2 0.044 1.5E-06 48.1 1.5 23 235-257 8-30 (178)
438 1oxx_K GLCV, glucose, ABC tran 92.2 0.035 1.2E-06 55.8 0.9 24 235-258 32-55 (353)
439 1tq4_A IIGP1, interferon-induc 92.2 0.088 3E-06 54.0 3.9 23 236-258 71-93 (413)
440 2dpy_A FLII, flagellum-specifi 92.2 0.092 3.2E-06 54.3 4.1 27 236-262 159-185 (438)
441 3c5c_A RAS-like protein 12; GD 92.2 0.058 2E-06 48.2 2.3 23 235-257 22-44 (187)
442 3bwd_D RAC-like GTP-binding pr 92.2 0.057 2E-06 47.4 2.2 24 234-257 8-31 (182)
443 1mh1_A RAC1; GTP-binding, GTPa 92.1 0.058 2E-06 47.4 2.2 23 235-257 6-28 (186)
444 1z06_A RAS-related protein RAB 92.1 0.059 2E-06 48.0 2.3 23 235-257 21-43 (189)
445 2pjz_A Hypothetical protein ST 92.1 0.041 1.4E-06 52.9 1.2 24 235-258 31-54 (263)
446 3k53_A Ferrous iron transport 92.0 0.043 1.5E-06 52.6 1.3 23 235-257 4-26 (271)
447 1m2o_B GTP-binding protein SAR 92.0 0.05 1.7E-06 48.8 1.7 23 235-257 24-46 (190)
448 4hlc_A DTMP kinase, thymidylat 92.0 0.08 2.7E-06 48.8 3.1 28 237-264 5-34 (205)
449 1vg8_A RAS-related protein RAB 92.0 0.061 2.1E-06 48.4 2.3 25 234-258 8-32 (207)
450 1svi_A GTP-binding protein YSX 92.0 0.047 1.6E-06 48.7 1.5 24 234-257 23-46 (195)
451 2cxx_A Probable GTP-binding pr 92.0 0.038 1.3E-06 49.0 0.8 22 236-257 3-24 (190)
452 2a5j_A RAS-related protein RAB 91.9 0.061 2.1E-06 48.0 2.2 23 235-257 22-44 (191)
453 3cph_A RAS-related protein SEC 91.9 0.063 2.1E-06 48.6 2.2 24 234-257 20-43 (213)
454 1ls1_A Signal recognition part 91.9 0.098 3.3E-06 51.1 3.7 34 234-267 98-134 (295)
455 3ihw_A Centg3; RAS, centaurin, 91.9 0.064 2.2E-06 47.9 2.2 22 236-257 22-43 (184)
456 3reg_A RHO-like small GTPase; 91.8 0.065 2.2E-06 47.9 2.2 24 235-258 24-47 (194)
457 1pui_A ENGB, probable GTP-bind 91.8 0.024 8.1E-07 51.5 -0.8 23 235-257 27-49 (210)
458 2obl_A ESCN; ATPase, hydrolase 91.8 0.073 2.5E-06 53.3 2.7 28 236-263 73-100 (347)
459 1dek_A Deoxynucleoside monopho 91.7 0.069 2.3E-06 50.7 2.3 27 237-263 4-30 (241)
460 2bcg_Y Protein YP2, GTP-bindin 91.6 0.059 2E-06 48.7 1.7 23 235-257 9-31 (206)
461 3nh6_A ATP-binding cassette SU 91.6 0.041 1.4E-06 54.1 0.7 26 233-258 79-104 (306)
462 2npi_A Protein CLP1; CLP1-PCF1 91.6 0.059 2E-06 56.1 1.9 27 232-258 136-162 (460)
463 3t5g_A GTP-binding protein RHE 91.6 0.061 2.1E-06 47.3 1.7 23 235-257 7-29 (181)
464 3pqc_A Probable GTP-binding pr 91.6 0.054 1.9E-06 48.0 1.4 24 234-257 23-46 (195)
465 1ksh_A ARF-like protein 2; sma 91.6 0.054 1.8E-06 48.0 1.3 24 234-257 18-41 (186)
466 2hf9_A Probable hydrogenase ni 91.5 0.065 2.2E-06 49.3 1.9 24 235-258 39-62 (226)
467 2fu5_C RAS-related protein RAB 91.5 0.045 1.5E-06 48.3 0.7 24 234-257 8-31 (183)
468 3oes_A GTPase rhebl1; small GT 91.4 0.063 2.2E-06 48.4 1.7 24 235-258 25-48 (201)
469 2bbs_A Cystic fibrosis transme 91.4 0.045 1.5E-06 53.4 0.7 24 235-258 65-88 (290)
470 2gks_A Bifunctional SAT/APS ki 91.4 0.056 1.9E-06 57.6 1.5 25 235-259 373-397 (546)
471 3gd7_A Fusion complex of cysti 91.4 0.053 1.8E-06 55.2 1.2 25 234-258 47-71 (390)
472 3gj0_A GTP-binding nuclear pro 91.4 0.045 1.6E-06 50.2 0.7 24 235-258 16-40 (221)
473 3lxx_A GTPase IMAP family memb 91.4 0.065 2.2E-06 50.1 1.8 24 234-257 29-52 (239)
474 2dzn_B 26S protease regulatory 91.4 0.015 5E-07 45.6 -2.3 63 390-452 1-68 (82)
475 1ko7_A HPR kinase/phosphatase; 91.3 0.074 2.5E-06 52.4 2.2 29 234-263 144-172 (314)
476 1gwn_A RHO-related GTP-binding 91.3 0.067 2.3E-06 48.9 1.7 23 235-257 29-51 (205)
477 1u0l_A Probable GTPase ENGC; p 91.3 0.054 1.9E-06 53.0 1.2 26 235-260 170-195 (301)
478 1moz_A ARL1, ADP-ribosylation 91.3 0.07 2.4E-06 47.0 1.8 23 233-255 17-39 (183)
479 1knx_A Probable HPR(Ser) kinas 91.2 0.065 2.2E-06 52.8 1.6 29 234-263 147-175 (312)
480 2qag_B Septin-6, protein NEDD5 91.1 0.07 2.4E-06 54.9 1.8 21 237-257 45-65 (427)
481 2cjw_A GTP-binding protein GEM 91.1 0.089 3.1E-06 47.3 2.4 23 235-257 7-29 (192)
482 2rcn_A Probable GTPase ENGC; Y 91.1 0.078 2.7E-06 53.3 2.1 25 235-259 216-240 (358)
483 3qks_A DNA double-strand break 91.0 0.094 3.2E-06 48.1 2.4 25 236-260 25-49 (203)
484 2yv5_A YJEQ protein; hydrolase 91.0 0.13 4.4E-06 50.3 3.5 24 235-259 166-189 (302)
485 4ag6_A VIRB4 ATPase, type IV s 91.0 0.14 4.8E-06 51.7 4.0 34 234-267 35-71 (392)
486 2qtf_A Protein HFLX, GTP-bindi 90.9 0.13 4.5E-06 51.7 3.6 21 237-257 182-202 (364)
487 3hjn_A DTMP kinase, thymidylat 90.9 0.13 4.4E-06 47.0 3.3 29 237-265 3-34 (197)
488 2qe7_A ATP synthase subunit al 90.8 0.28 9.7E-06 51.2 6.1 28 237-264 165-193 (502)
489 2atx_A Small GTP binding prote 90.8 0.08 2.8E-06 47.2 1.8 23 235-257 19-41 (194)
490 2vp4_A Deoxynucleoside kinase; 90.8 0.078 2.7E-06 49.5 1.7 26 237-263 23-48 (230)
491 2p67_A LAO/AO transport system 90.8 0.11 3.6E-06 51.8 2.8 24 235-258 57-80 (341)
492 3tui_C Methionine import ATP-b 90.8 0.079 2.7E-06 53.4 1.8 24 235-258 55-78 (366)
493 3ice_A Transcription terminati 90.8 0.34 1.2E-05 49.2 6.4 25 234-258 174-198 (422)
494 2fv8_A H6, RHO-related GTP-bin 90.7 0.083 2.9E-06 47.9 1.8 23 235-257 26-48 (207)
495 2q3h_A RAS homolog gene family 90.6 0.094 3.2E-06 47.1 2.0 23 235-257 21-43 (201)
496 4bas_A ADP-ribosylation factor 90.6 0.086 2.9E-06 47.0 1.7 23 234-256 17-39 (199)
497 3cpj_B GTP-binding protein YPT 90.6 0.1 3.4E-06 48.0 2.2 23 235-257 14-36 (223)
498 2h17_A ADP-ribosylation factor 90.5 0.063 2.2E-06 47.5 0.7 23 235-257 22-44 (181)
499 2gco_A H9, RHO-related GTP-bin 90.5 0.088 3E-06 47.5 1.7 23 235-257 26-48 (201)
500 3a1s_A Iron(II) transport prot 90.5 0.082 2.8E-06 50.5 1.5 22 235-256 6-27 (258)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-43 Score=360.61 Aligned_cols=241 Identities=22% Similarity=0.293 Sum_probs=197.3
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc--
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK-- 271 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~-- 271 (482)
.+..+|++|+|.+++|++|.+.+..++++|+.|.+.|+++++|+|||||||||||++|+|+|++++.+++.++.+++.
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 345899999999999999999999999999999999999999999999999999999999999999999999998773
Q ss_pred ----ChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhh
Q 011573 272 ----DNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFI 345 (482)
Q Consensus 272 ----~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 345 (482)
++..++.+|..+ ..||||||||||+++ +.|... ..+.+.....++++||+.|
T Consensus 222 ~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~---~~R~~~-------------------~~~~~~~~~~~l~~lL~~l 279 (405)
T 4b4t_J 222 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIG---STRVEG-------------------SGGGDSEVQRTMLELLNQL 279 (405)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCT---TSCSCS-------------------SSGGGGHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhCCceEeeecchhhc---cCCCCC-------------------CCCCcHHHHHHHHHHHHhh
Confidence 467799999877 489999999999975 333200 1112334567899999999
Q ss_pred cccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHH
Q 011573 346 DGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPAD 424 (482)
Q Consensus 346 dg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~ad 424 (482)
||+.+. .+++||+|||+|+.|||||+||||||.+|+|++|+.++|.+|++.++.........++..++. ..|||+||
T Consensus 280 Dg~~~~--~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGAD 357 (405)
T 4b4t_J 280 DGFETS--KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGAD 357 (405)
T ss_dssp HTTTCC--CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHH
T ss_pred hccCCC--CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHH
Confidence 999764 459999999999999999999999999999999999999999999987654332223455555 45999999
Q ss_pred HHHHhcccC----CCCCHHHHHHHHHHHHHHHHHHHhh
Q 011573 425 VAEHLMPKT----FPADVEFSLRSLNQALELAKEEARR 458 (482)
Q Consensus 425 i~~~l~~~~----~~~~~~~~~~~l~~al~~~~~~~~~ 458 (482)
|..+|..++ ......++.+++..|+++...+..+
T Consensus 358 i~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 358 VKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp HHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCcccc
Confidence 998876532 1223345678888888877665443
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-43 Score=360.66 Aligned_cols=241 Identities=22% Similarity=0.293 Sum_probs=196.4
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc-
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK- 271 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~- 271 (482)
..+..+|++|+|.+++|++|.+.+..+++++++|.+.|++|++|||||||||||||++|+|+|++++.+++.++.+++.
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 3455899999999999999999999999999999999999999999999999999999999999999999999988772
Q ss_pred -----ChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhh
Q 011573 272 -----DNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNF 344 (482)
Q Consensus 272 -----~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 344 (482)
++..++.+|..+ ..||||||||||+++ +.|... ....+.....++++||+.
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~---~~R~~~-------------------~~~~~~~~~~~l~~LL~~ 312 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIG---TKRYDS-------------------NSGGEREIQRTMLELLNQ 312 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSS---CCCSCS-------------------SCSSCCHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhc---ccCCCC-------------------CCCccHHHHHHHHHHHHH
Confidence 456788898876 479999999999975 333210 111233456789999999
Q ss_pred hcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHH
Q 011573 345 IDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPA 423 (482)
Q Consensus 345 ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~a 423 (482)
|||+.+. ++++||+|||+++.|||||+||||||.+|+|++|+.++|++||+.++.........++..++. +.|||+|
T Consensus 313 lDg~~~~--~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGA 390 (437)
T 4b4t_I 313 LDGFDDR--GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGA 390 (437)
T ss_dssp HHHCCCS--SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHH
T ss_pred hhCcCCC--CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHH
Confidence 9998654 569999999999999999999999999999999999999999999987654322223455555 4599999
Q ss_pred HHHHHhcccC----CCCCHHHHHHHHHHHHHHHHHHHh
Q 011573 424 DVAEHLMPKT----FPADVEFSLRSLNQALELAKEEAR 457 (482)
Q Consensus 424 di~~~l~~~~----~~~~~~~~~~~l~~al~~~~~~~~ 457 (482)
||..+|..++ ......++.+++.+|+++..+...
T Consensus 391 DI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~~ 428 (437)
T 4b4t_I 391 DIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKV 428 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCCC
Confidence 9998876532 122334567888888887766543
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-42 Score=356.79 Aligned_cols=237 Identities=22% Similarity=0.300 Sum_probs=194.0
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc--
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK-- 271 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~-- 271 (482)
.+..+|++|+|.+++|+.|.+.+..++.+|+.|.+.|++|++|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK 254 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence 455899999999999999999999999999999999999999999999999999999999999999999999998773
Q ss_pred ----ChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhh
Q 011573 272 ----DNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFI 345 (482)
Q Consensus 272 ----~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 345 (482)
+...++.+|..+ ..||||||||||+++ +.|... ....+.....+++.||+.|
T Consensus 255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~---~~R~~~-------------------~~~~~~~~~~~l~~lL~~l 312 (437)
T 4b4t_L 255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIG---GRRFSE-------------------GTSADREIQRTLMELLTQM 312 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSS---CCCSSS-------------------CCSSTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCCceeeeecccccc---cccccC-------------------CCCcchHHHHHHHHHHHHh
Confidence 356788888876 489999999999975 333210 1112334567899999999
Q ss_pred cccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHH
Q 011573 346 DGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPAD 424 (482)
Q Consensus 346 dg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~ad 424 (482)
||+.+. ++++||+|||+|+.|||||+||||||.+|+|++|+.++|..||+.++.........++..++. +.|||+||
T Consensus 313 Dg~~~~--~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGAD 390 (437)
T 4b4t_L 313 DGFDNL--GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGAD 390 (437)
T ss_dssp HSSSCT--TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHH
T ss_pred hcccCC--CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHH
Confidence 999764 459999999999999999999999999999999999999999999987644332223555555 45999999
Q ss_pred HHHHhcccC----CCCCHHHHHHHHHHHHHHHHH
Q 011573 425 VAEHLMPKT----FPADVEFSLRSLNQALELAKE 454 (482)
Q Consensus 425 i~~~l~~~~----~~~~~~~~~~~l~~al~~~~~ 454 (482)
|..+|..++ ......++.+++.+|+++..+
T Consensus 391 i~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 391 IRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAE 424 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 998876521 112234567788888877655
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-42 Score=357.50 Aligned_cols=237 Identities=21% Similarity=0.276 Sum_probs=189.1
Q ss_pred eccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc
Q 011573 192 VFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK 271 (482)
Q Consensus 192 ~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~ 271 (482)
...++.+|++|+|.+++|++|.+.+..|+.+|+.|.+.|+++++|||||||||||||++|+|+|++++.+++.++++.+.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999998872
Q ss_pred ------ChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHh
Q 011573 272 ------DNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLN 343 (482)
Q Consensus 272 ------~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 343 (482)
+...++.+|..+ ..||||||||||+++ +.|... ..+.......+++.||+
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~---~~R~~~-------------------~~~~~~~~~~~~~~lL~ 310 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIG---TKRFDS-------------------EKSGDREVQRTMLELLN 310 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHH---CCCSSG-------------------GGGTTHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhh---hccCCC-------------------CCCCchHHHHHHHHHHH
Confidence 456788898766 489999999999975 333210 11122345678999999
Q ss_pred hhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCH
Q 011573 344 FIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTP 422 (482)
Q Consensus 344 ~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~ 422 (482)
.|||+.+. ++++||+|||+|+.|||||+||||||.+|+|++|+.++|.+||+.++.........++..++. ..|||+
T Consensus 311 ~ldg~~~~--~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sG 388 (434)
T 4b4t_M 311 QLDGFSSD--DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNG 388 (434)
T ss_dssp HHTTSCSS--CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCH
T ss_pred HhhccCCC--CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCH
Confidence 99999764 459999999999999999999999999999999999999999999987543322223444554 459999
Q ss_pred HHHHHHhcccC----CCCCHHHHHHHHHHHHHHH
Q 011573 423 ADVAEHLMPKT----FPADVEFSLRSLNQALELA 452 (482)
Q Consensus 423 adi~~~l~~~~----~~~~~~~~~~~l~~al~~~ 452 (482)
|||..+|..++ ......+..+++.+|+++.
T Consensus 389 ADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 389 AQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 99998876421 0111223445566665543
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-41 Score=352.23 Aligned_cols=234 Identities=24% Similarity=0.312 Sum_probs=188.1
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc--
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK-- 271 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~-- 271 (482)
.+..+|++|+|.+++|+.|.+.+..|+.+|++|.+.|++|++|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~ 245 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK 245 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc
Confidence 344899999999999999999999999999999999999999999999999999999999999999999999998762
Q ss_pred ----ChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhh
Q 011573 272 ----DNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFI 345 (482)
Q Consensus 272 ----~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 345 (482)
+...++.+|..+ ..||||||||||+++ +.|... ....+.....++++||+.|
T Consensus 246 ~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~---~~R~~~-------------------~~~~~~~~~r~l~~lL~~l 303 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIA---TKRFDA-------------------QTGSDREVQRILIELLTQM 303 (428)
T ss_dssp SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHH---CSCSSS-------------------CSCCCCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCCeeechhhhhhh---ccccCC-------------------CCCCChHHHHHHHHHHHHh
Confidence 456789999876 489999999999975 333200 1112334567899999999
Q ss_pred cccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEcc-CCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHH
Q 011573 346 DGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELS-HCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPA 423 (482)
Q Consensus 346 dg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~-~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~a 423 (482)
||+.+. .+++||+|||+++.|||||+||||||.+|+|| +|+.++|..|++.++.........++..++. +.|||+|
T Consensus 304 dg~~~~--~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sga 381 (428)
T 4b4t_K 304 DGFDQS--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGA 381 (428)
T ss_dssp HHSCSS--CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHH
T ss_pred hCCCCC--CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHH
Confidence 999775 45999999999999999999999999999996 8999999999999987544322223455555 4599999
Q ss_pred HHHHHhcccC----CCCCHHHHHHHHHHHHHH
Q 011573 424 DVAEHLMPKT----FPADVEFSLRSLNQALEL 451 (482)
Q Consensus 424 di~~~l~~~~----~~~~~~~~~~~l~~al~~ 451 (482)
||..+|..++ .......+.+++.+|+.+
T Consensus 382 di~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 382 VIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 9998876421 111122344556555543
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-41 Score=350.16 Aligned_cols=240 Identities=22% Similarity=0.229 Sum_probs=193.8
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc-
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK- 271 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~- 271 (482)
-.+..+|++|+|.+++|+.|.+.+..++.+++.|.++|+++++|+|||||||||||++|+|+|++++.+++.++++.+.
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 3445899999999999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred -----ChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhh
Q 011573 272 -----DNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNF 344 (482)
Q Consensus 272 -----~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 344 (482)
++..++.+|..+ ..||||||||||+++ +.|... ..+.......+++.||+.
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~---~~R~~~-------------------~~~~~~~~~~~l~~lL~~ 339 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVG---GARFDD-------------------GAGGDNEVQRTMLELITQ 339 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTS---BCCSSS-------------------SCGGGGHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeeccccccc---ccccCc-------------------CCCccHHHHHHHHHHHHH
Confidence 456788999876 489999999999975 333210 111233456789999999
Q ss_pred hcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHH
Q 011573 345 IDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPA 423 (482)
Q Consensus 345 ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~a 423 (482)
|||+.+. ++++||+|||+++.|||||+||||||.+|+|++|+.++|.+||+.++.........++..++. ..|||+|
T Consensus 340 lDg~~~~--~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGA 417 (467)
T 4b4t_H 340 LDGFDPR--GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGA 417 (467)
T ss_dssp HHSSCCT--TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHH
T ss_pred hhccCCC--CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHH
Confidence 9998654 569999999999999999999999999999999999999999999987654332223444444 4599999
Q ss_pred HHHHHhcccC----CCCCHHHHHHHHHHHHHHHHHHH
Q 011573 424 DVAEHLMPKT----FPADVEFSLRSLNQALELAKEEA 456 (482)
Q Consensus 424 di~~~l~~~~----~~~~~~~~~~~l~~al~~~~~~~ 456 (482)
||..+|..++ .........+++.+|+++.....
T Consensus 418 DI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~ 454 (467)
T 4b4t_H 418 ELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGY 454 (467)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCc
Confidence 9998876531 11222345677778887765543
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.9e-36 Score=331.24 Aligned_cols=213 Identities=19% Similarity=0.280 Sum_probs=160.8
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc----
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV---- 270 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~---- 270 (482)
+..+|++++|.+++|+.|.+.+..++++++.|.+.|+.+++|+|||||||||||++|+|+|++++.+++.++.+++
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccc
Confidence 4478999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred --cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 271 --KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 271 --~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
+++..++++|..+. .||||||||||+++ +.|... ..+.+.....++++||+.||
T Consensus 552 vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~---~~R~~~-------------------~~~~~~~~~rv~~~lL~~md 609 (806)
T 3cf2_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIA---KARGGN-------------------IGDGGGAADRVINQILTEMD 609 (806)
T ss_dssp CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC------------------------------------CHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcCCceeechhhhHHh---hccCCC-------------------CCCCchHHHHHHHHHHHHHh
Confidence 46788999999874 79999999999975 333210 01123345678999999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhcC-CCCCHHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLGE-AKMTPADV 425 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~~-~~~s~adi 425 (482)
|+.+. .+++||+|||+|+.|||||+||||||.+|++++|+.++|.+|++.++.........++..+++. .|||+|||
T Consensus 610 g~~~~--~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi 687 (806)
T 3cf2_A 610 GMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADL 687 (806)
T ss_dssp SSCSS--SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CH
T ss_pred CCCCC--CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHH
Confidence 99664 4589999999999999999999999999999999999999999999976554333456666664 49999999
Q ss_pred HHHhcc
Q 011573 426 AEHLMP 431 (482)
Q Consensus 426 ~~~l~~ 431 (482)
.++|..
T Consensus 688 ~~l~~~ 693 (806)
T 3cf2_A 688 TEICQR 693 (806)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988874
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1e-33 Score=313.42 Aligned_cols=209 Identities=22% Similarity=0.304 Sum_probs=178.6
Q ss_pred CCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc-----
Q 011573 196 PATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV----- 270 (482)
Q Consensus 196 p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~----- 270 (482)
..+|++|+|.+++|++|.+.+..++++|+.|.++|+.+++|+|||||||||||+||+|+|++++.+++.+++.++
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 378999999999999999999989999999999999999999999999999999999999999999999998776
Q ss_pred -cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcc
Q 011573 271 -KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDG 347 (482)
Q Consensus 271 -~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg 347 (482)
.++..++.+|..+. .||||||||||.++. .|. ..........+++||..|||
T Consensus 280 gese~~lr~lF~~A~~~~PsIIfIDEiDal~~---~r~----------------------~~~~~~~~riv~~LL~~mdg 334 (806)
T 3cf2_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAP---KRE----------------------KTHGEVERRIVSQLLTLMDG 334 (806)
T ss_dssp THHHHHHHHHHHHHTTSCSEEEEEESGGGTCC---TTT----------------------TCCCTTHHHHHHHHHTHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEEehhccccc---ccC----------------------CCCChHHHHHHHHHHHHHhc
Confidence 24567999998874 799999999999752 321 11223456789999999999
Q ss_pred cccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHHH
Q 011573 348 LWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADVA 426 (482)
Q Consensus 348 ~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi~ 426 (482)
+.+. .+++||+|||+++.|||||+||||||.+|+++.|+.++|.+|++.++.........++..++. +.||++|||.
T Consensus 335 ~~~~--~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~ 412 (806)
T 3cf2_A 335 LKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412 (806)
T ss_dssp CCGG--GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHH
T ss_pred cccc--CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHH
Confidence 9765 458999999999999999999999999999999999999999999987654333334555555 5699999999
Q ss_pred HHhcc
Q 011573 427 EHLMP 431 (482)
Q Consensus 427 ~~l~~ 431 (482)
.++..
T Consensus 413 ~Lv~e 417 (806)
T 3cf2_A 413 ALCSE 417 (806)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77763
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=6.5e-30 Score=255.27 Aligned_cols=214 Identities=19% Similarity=0.284 Sum_probs=173.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc---
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV--- 270 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~--- 270 (482)
.++.+|++|+|.+++++.|.+.+..++..++.|...|+++++++|||||||||||++++++|++++.+++.+++..+
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred ---cChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhh
Q 011573 271 ---KDNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFI 345 (482)
Q Consensus 271 ---~~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 345 (482)
.....++.+|..+ ..|+||||||||.+....+... ..........++.||..|
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~----------------------~~~~~~~~~~~~~lL~~l 146 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI----------------------GDGGGAADRVINQILTEM 146 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTT----------------------CCSSCSCCHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCc----------------------CCcchHHHHHHHHHHHHh
Confidence 2445678888776 4689999999999753111100 001123345778899999
Q ss_pred cccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHH
Q 011573 346 DGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPAD 424 (482)
Q Consensus 346 dg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~ad 424 (482)
|++.. ..+++||+|||+++.||++++|||||+..|+++.|+.++|..|++.++..........+..++. ..|++++|
T Consensus 147 ~~~~~--~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~d 224 (301)
T 3cf0_A 147 DGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGAD 224 (301)
T ss_dssp HSSCT--TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHH
T ss_pred hcccC--CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHH
Confidence 99854 3468999999999999999999999999999999999999999999987543221122333443 45999999
Q ss_pred HHHHhcc
Q 011573 425 VAEHLMP 431 (482)
Q Consensus 425 i~~~l~~ 431 (482)
|..++..
T Consensus 225 l~~l~~~ 231 (301)
T 3cf0_A 225 LTEICQR 231 (301)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987763
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.97 E-value=6.6e-30 Score=252.04 Aligned_cols=210 Identities=22% Similarity=0.329 Sum_probs=162.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccC--
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKD-- 272 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~-- 272 (482)
+..+|++|+|.+++|+.|.+.+..++.+++.|...|..+++|+||+||||||||+|+++||+.++.+++.++...+..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 457899999999999999999999999999999999999999999999999999999999999999998888766532
Q ss_pred ----hHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 273 ----NTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 273 ----~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
...+..+|..+ ..|+|+++||||.++. .+... ........++.++..||
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~---~r~~~----------------------~~~~~~~~~~~~l~~Ls 139 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCP---RRSDR----------------------ETGASVRVVNQLLTEMD 139 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------------------------------CTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhc---ccCCC----------------------cchHHHHHHHHHHHhhh
Confidence 34577888775 4799999999998642 22100 00112346788999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccC---CCcHHHHHHHhc---CCCC
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIES---HNLFDKIGELLG---EAKM 420 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~---~~~~~~i~~l~~---~~~~ 420 (482)
|.... ...+++++||+|+.||||++||||||.+|++++|+.++|..|++.++.... .....++..++. ..||
T Consensus 140 gg~~~--~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 217 (274)
T 2x8a_A 140 GLEAR--QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCY 217 (274)
T ss_dssp TCCST--TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSC
T ss_pred ccccc--CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCc
Confidence 98543 458899999999999999999999999999999999999999999985321 111223445554 3499
Q ss_pred CHHHHHHHhcc
Q 011573 421 TPADVAEHLMP 431 (482)
Q Consensus 421 s~adi~~~l~~ 431 (482)
|+|||..+|..
T Consensus 218 sgadl~~l~~~ 228 (274)
T 2x8a_A 218 TGADLSALVRE 228 (274)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999987764
No 11
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=1.1e-28 Score=243.38 Aligned_cols=241 Identities=21% Similarity=0.242 Sum_probs=186.2
Q ss_pred eccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc
Q 011573 192 VFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK 271 (482)
Q Consensus 192 ~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~ 271 (482)
...++.+|++++|.+++++.|.+.+..++..++.|...|...++++|||||||||||++++++|+.++.+++.+++..+.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 44566889999999999999999999999999999999999999999999999999999999999999999999887763
Q ss_pred ------ChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHh
Q 011573 272 ------DNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLN 343 (482)
Q Consensus 272 ------~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 343 (482)
....+..+|..+ ..|+||||||||.++. .+.. ............+..+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~---~~~~-------------------~~~~~~~~~~~~l~~ll~ 146 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAA---KRTD-------------------ALTGGDREVQRTLMQLLA 146 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHB---CCSS-------------------SCCGGGGHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcc---cCcc-------------------ccCCccHHHHHHHHHHHH
Confidence 234566666654 4689999999999752 2210 001122334677888999
Q ss_pred hhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCH
Q 011573 344 FIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTP 422 (482)
Q Consensus 344 ~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~ 422 (482)
.++++.. ..+++||+|||.++.||++++|||||+..++++.|+.+++.+|++.++..........+..++. ..|+++
T Consensus 147 ~~~~~~~--~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~ 224 (285)
T 3h4m_A 147 EMDGFDA--RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVG 224 (285)
T ss_dssp HHHTTCS--SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCH
T ss_pred HhhCCCC--CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCH
Confidence 9988744 3468999999999999999999999999999999999999999999987543322223444444 459999
Q ss_pred HHHHHHhcccC----CCCCHHHHHHHHHHHHHHHHHHH
Q 011573 423 ADVAEHLMPKT----FPADVEFSLRSLNQALELAKEEA 456 (482)
Q Consensus 423 adi~~~l~~~~----~~~~~~~~~~~l~~al~~~~~~~ 456 (482)
++|..++..+. .........+++.++++......
T Consensus 225 ~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~~ 262 (285)
T 3h4m_A 225 AELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEKK 262 (285)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhcc
Confidence 99998765421 11223355667777777665543
No 12
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=3.9e-29 Score=263.44 Aligned_cols=233 Identities=22% Similarity=0.308 Sum_probs=177.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc---
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK--- 271 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~--- 271 (482)
.+.+|++|+|.++.|+++.+.+ .++..+..|.++|...++|+||+||||||||++++++|++++.+++.++++++.
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v-~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVV-EFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHH-HHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHH-HHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 4568999999999999996654 678889999999999999999999999999999999999999999999888762
Q ss_pred ---ChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 272 ---DNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 272 ---~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
....++.+|..+ ..||||||||||.+.. .+.. ...+.+.....+++.||+.||
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~---~r~~-------------------~~~g~~~~~~~~l~~LL~~ld 147 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGR---HRGA-------------------GLGGGHDEREQTLNQLLVEMD 147 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCC---C----------------------------CHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhh---hccc-------------------ccCcCcHHHHHHHHHHHHHHh
Confidence 245678888776 4799999999999742 2210 001122345678999999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADV 425 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi 425 (482)
++... .+++||+|||+++.|||+++||||||..|.++.|+.++|..|++.++..........+..++. ..|++++||
T Consensus 148 ~~~~~--~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL 225 (476)
T 2ce7_A 148 GFDSK--EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADL 225 (476)
T ss_dssp HSCGG--GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHH
T ss_pred ccCCC--CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHH
Confidence 88543 458999999999999999999999999999999999999999999887543221112344554 459999999
Q ss_pred HHHhcccC----CCCCHHHHHHHHHHHHHHH
Q 011573 426 AEHLMPKT----FPADVEFSLRSLNQALELA 452 (482)
Q Consensus 426 ~~~l~~~~----~~~~~~~~~~~l~~al~~~ 452 (482)
.+++..+. .........+++..++.+.
T Consensus 226 ~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v 256 (476)
T 2ce7_A 226 ENLVNEAALLAAREGRDKITMKDFEEAIDRV 256 (476)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeecHHHHHHHHHHH
Confidence 97765421 1112234445566666554
No 13
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.96 E-value=3.8e-28 Score=244.87 Aligned_cols=209 Identities=23% Similarity=0.277 Sum_probs=171.2
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-CCceeecccccc--
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-GYDLYDLELTAV-- 270 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-~~~i~~l~l~~~-- 270 (482)
.++.+|++|+|.+++|+.|.+.+..+++.++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++.+
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 34578999999999999999999999999888874 35677999999999999999999999999 899999988765
Q ss_pred ----cChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhh
Q 011573 271 ----KDNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNF 344 (482)
Q Consensus 271 ----~~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 344 (482)
.....++.+|..+ ..|+||||||||.+.. .+. ..........++.||..
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~---~~~----------------------~~~~~~~~~~~~~ll~~ 139 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG---SRS----------------------ENESEAARRIKTEFLVQ 139 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGC---CSS----------------------SCCTTHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcc---ccc----------------------cccchHHHHHHHHHHHH
Confidence 2456788888765 4789999999999752 221 01123345678899999
Q ss_pred hcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCC-cHHHHHHHhcC-CCCCH
Q 011573 345 IDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHN-LFDKIGELLGE-AKMTP 422 (482)
Q Consensus 345 ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~-~~~~i~~l~~~-~~~s~ 422 (482)
+|++... ...++||+|||+++.||++|+| ||+..|++++|+.++|..|++.++...... ....+..++.. .|||+
T Consensus 140 ld~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sg 216 (322)
T 1xwi_A 140 MQGVGVD-NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSG 216 (322)
T ss_dssp HHCSSSC-CTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCH
T ss_pred Hhccccc-CCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCH
Confidence 9998532 3568999999999999999999 999999999999999999999998765443 34466677764 59999
Q ss_pred HHHHHHhcc
Q 011573 423 ADVAEHLMP 431 (482)
Q Consensus 423 adi~~~l~~ 431 (482)
+||..++..
T Consensus 217 adl~~l~~~ 225 (322)
T 1xwi_A 217 ADISIIVRD 225 (322)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999977663
No 14
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=9.4e-29 Score=240.24 Aligned_cols=236 Identities=21% Similarity=0.285 Sum_probs=164.1
Q ss_pred CCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc----
Q 011573 196 PATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK---- 271 (482)
Q Consensus 196 p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~---- 271 (482)
+.+|++++|.+++|+.|.+.+ .++..++.|...|.+.++++|||||||||||++|+++|++++.+++.++++.+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFV-DYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHH-HHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHH-HHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 478999999999999986654 568888899999999999999999999999999999999999999999888762
Q ss_pred --ChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcc
Q 011573 272 --DNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDG 347 (482)
Q Consensus 272 --~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg 347 (482)
....++.+|..+. .++||||||||.+.. .+.... ...........+..||+.+++
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~---~~~~~~------------------~~~~~~~~~~~l~~ll~~~~~ 139 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGK---KRSTTM------------------SGFSNTEEEQTLNQLLVEMDG 139 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC----------------------------------------CHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhc---cccccc------------------cCccchhHHHHHHHHHHHhhC
Confidence 2345677777653 689999999999752 221000 000122344678889999998
Q ss_pred cccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHH--HHHHhc-CCCCCHHH
Q 011573 348 LWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDK--IGELLG-EAKMTPAD 424 (482)
Q Consensus 348 ~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~--i~~l~~-~~~~s~ad 424 (482)
... ...+++|+|||+++.||++++|||||+..+++++|+.++|..|++.++.......... +..++. ..|+++++
T Consensus 140 ~~~--~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~ 217 (262)
T 2qz4_A 140 MGT--TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGAD 217 (262)
T ss_dssp CCT--TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHH
T ss_pred cCC--CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHH
Confidence 743 3468999999999999999999999999999999999999999999987654433332 244555 35999999
Q ss_pred HHHHhcccC----CCCCHHHHHHHHHHHHHHHHHH
Q 011573 425 VAEHLMPKT----FPADVEFSLRSLNQALELAKEE 455 (482)
Q Consensus 425 i~~~l~~~~----~~~~~~~~~~~l~~al~~~~~~ 455 (482)
|..++..+. .........+++..++++....
T Consensus 218 l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 218 IANICNEAALHAAREGHTSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp HHHHHHHHHTC--------CCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccC
Confidence 987765421 1112223334555555555443
No 15
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=2.7e-28 Score=237.39 Aligned_cols=214 Identities=21% Similarity=0.303 Sum_probs=163.6
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc-
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK- 271 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~- 271 (482)
..++.+|++++|.+++++.+.+.+ .++..+..|...|...++|+|||||||||||++++++|+.++.+++.+++..+.
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHH-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 446789999999999999997654 568888889999999999999999999999999999999999999999887762
Q ss_pred -----ChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhh
Q 011573 272 -----DNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNF 344 (482)
Q Consensus 272 -----~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 344 (482)
....++.+|..+. .|+++||||||.+.. .+... ..+........+..+|..
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~---~~~~~-------------------~~~~~~~~~~~~~~ll~~ 141 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR---QRGAG-------------------LGGGHDEREQTLNQMLVE 141 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTC---CCSTT-------------------SCCTTCHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhcc---CCCCC-------------------cCCCchHHHHHHHHHHHH
Confidence 3466788887764 579999999999742 21100 001122334678899999
Q ss_pred hcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHH
Q 011573 345 IDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPA 423 (482)
Q Consensus 345 ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~a 423 (482)
+|++... ..+++|+|||+++.||++++|||||+..++++.|+.++|..|++.++..........+..++. ..||+++
T Consensus 142 l~~~~~~--~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~ 219 (257)
T 1lv7_A 142 MDGFEGN--EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGA 219 (257)
T ss_dssp HHTCCSS--SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHH
T ss_pred hhCcccC--CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHH
Confidence 9998543 458999999999999999999999999999999999999999999986533221112333444 4589999
Q ss_pred HHHHHhcc
Q 011573 424 DVAEHLMP 431 (482)
Q Consensus 424 di~~~l~~ 431 (482)
||..++..
T Consensus 220 dl~~l~~~ 227 (257)
T 1lv7_A 220 DLANLVNE 227 (257)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99977654
No 16
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.95 E-value=7.9e-28 Score=242.34 Aligned_cols=211 Identities=21% Similarity=0.261 Sum_probs=170.8
Q ss_pred eccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc
Q 011573 192 VFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK 271 (482)
Q Consensus 192 ~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~ 271 (482)
...++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 4456689999999999999999999999988888876 455678999999999999999999999999999999987652
Q ss_pred ------ChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHh
Q 011573 272 ------DNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLN 343 (482)
Q Consensus 272 ------~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 343 (482)
....++.+|..+ ..|+||||||||.+.. .+. .............||.
T Consensus 89 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~---~~~----------------------~~~~~~~~~~~~~ll~ 143 (322)
T 3eie_A 89 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTG---TRG----------------------EGESEASRRIKTELLV 143 (322)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSC---C----------------------------CCTHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhc---cCC----------------------CCcchHHHHHHHHHHH
Confidence 345577777765 4789999999999752 221 1122345677889999
Q ss_pred hhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCC-cHHHHHHHhcC-CCCC
Q 011573 344 FIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHN-LFDKIGELLGE-AKMT 421 (482)
Q Consensus 344 ~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~-~~~~i~~l~~~-~~~s 421 (482)
.+|++... ...++||+|||+++.||++|+| ||+..|++++|+.++|..|++.++...... ....+..++.. .||+
T Consensus 144 ~l~~~~~~-~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~s 220 (322)
T 3eie_A 144 QMNGVGND-SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYS 220 (322)
T ss_dssp HHGGGGTS-CCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCC
T ss_pred Hhcccccc-CCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCC
Confidence 99998543 3468999999999999999999 999999999999999999999998765543 34456677664 4999
Q ss_pred HHHHHHHhcc
Q 011573 422 PADVAEHLMP 431 (482)
Q Consensus 422 ~adi~~~l~~ 431 (482)
++||..++..
T Consensus 221 g~di~~l~~~ 230 (322)
T 3eie_A 221 GSDIAVVVKD 230 (322)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999977653
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.95 E-value=3.3e-27 Score=241.13 Aligned_cols=208 Identities=22% Similarity=0.293 Sum_probs=166.7
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc---
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV--- 270 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~--- 270 (482)
.++.+|++|+|.+++++.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.+++..+
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 35678999999999999999999999898888876 56778999999999999999999999999999999988765
Q ss_pred ---cChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhh
Q 011573 271 ---KDNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFI 345 (482)
Q Consensus 271 ---~~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 345 (482)
.....++.+|..+ ..++||||||||.+. +.+. ...........+.||..|
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~---~~r~----------------------~~~~~~~~~~~~~ll~~l 178 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALT---GTRG----------------------EGESEASRRIKTELLVQM 178 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGT---C----------------------------CTHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhc---ccCC----------------------CCcchHHHHHHHHHHHHh
Confidence 2456677787765 378999999999974 2221 012233456788899999
Q ss_pred cccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCC-cHHHHHHHhc-CCCCCHH
Q 011573 346 DGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHN-LFDKIGELLG-EAKMTPA 423 (482)
Q Consensus 346 dg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~-~~~~i~~l~~-~~~~s~a 423 (482)
|++... ...++||+|||+++.||++++| ||+..|++++|+.++|..|++.++...... ....+..++. ..||+++
T Consensus 179 ~~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~ 255 (355)
T 2qp9_X 179 NGVGND-SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGS 255 (355)
T ss_dssp HHCC----CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHH
T ss_pred hccccc-CCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHH
Confidence 987542 3458999999999999999999 999999999999999999999998765443 2345666666 4599999
Q ss_pred HHHHHhc
Q 011573 424 DVAEHLM 430 (482)
Q Consensus 424 di~~~l~ 430 (482)
||..+|.
T Consensus 256 dl~~l~~ 262 (355)
T 2qp9_X 256 DIAVVVK 262 (355)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9997765
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.94 E-value=7.8e-27 Score=247.46 Aligned_cols=210 Identities=22% Similarity=0.301 Sum_probs=173.5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc---
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK--- 271 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~--- 271 (482)
.+.+|++++|.+..++.|.+.+..++..++.|..+|.++++++|||||||||||++|+++|++++.+++.+++..+.
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999988762
Q ss_pred ---ChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 272 ---DNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 272 ---~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
....++.+|..+ ..|+||||||||.+.. .+. ..........++.||..||
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~---~~~----------------------~~~~~~~~~~~~~LL~~ld 333 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAP---KRE----------------------KTHGEVERRIVSQLLTLMD 333 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCB---CTT----------------------SCCCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcc---ccc----------------------cccchHHHHHHHHHHHHhh
Confidence 234677788776 3689999999999752 221 0112234578889999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADV 425 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi 425 (482)
+.... ..++||+|||+++.||++++|+|||+..|+++.|+.++|..|++.++..........+..++. ..|++++||
T Consensus 334 ~~~~~--~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL 411 (489)
T 3hu3_A 334 GLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADL 411 (489)
T ss_dssp HSCTT--SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHH
T ss_pred ccccC--CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHH
Confidence 87543 458999999999999999999999999999999999999999999987543332223444554 459999999
Q ss_pred HHHhcc
Q 011573 426 AEHLMP 431 (482)
Q Consensus 426 ~~~l~~ 431 (482)
..++..
T Consensus 412 ~~L~~~ 417 (489)
T 3hu3_A 412 AALCSE 417 (489)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 977654
No 19
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.94 E-value=7.3e-27 Score=247.48 Aligned_cols=234 Identities=21% Similarity=0.306 Sum_probs=177.6
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccC--
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKD-- 272 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~-- 272 (482)
++.+|++|+|.+++|+.+.+ +..++..+..|..+|...++|+||+||||||||+|+++||++++.+++.++++.+..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~-lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHH-HHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHH-HHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 56789999999999999865 456778888899999999999999999999999999999999999999998877632
Q ss_pred ----hHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 273 ----NTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 273 ----~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
...++.+|..+. .|+|+||||||.+.. .+... ..........+++.||..||
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~---~r~~~-------------------~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR---KRGSG-------------------VGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCC---CSSSS-------------------TTTSSHHHHHHHHHHHHHGG
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHH---hhccC-------------------cCCCcHHHHHHHHHHHHHhc
Confidence 345778888764 589999999998642 21100 00012234568899999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADV 425 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi 425 (482)
|.... ..+++|++||+|+.|||+|+||||||.+|+++.|+.++|..|++.++..........+..++. ..|++++||
T Consensus 163 g~~~~--~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL 240 (499)
T 2dhr_A 163 GFEKD--TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADL 240 (499)
T ss_dssp GCCSS--CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHH
T ss_pred ccccC--ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHH
Confidence 98543 458999999999999999999999999999999999999999999876432221222344555 359999999
Q ss_pred HHHhccc----CCCCCHHHHHHHHHHHHHHHH
Q 011573 426 AEHLMPK----TFPADVEFSLRSLNQALELAK 453 (482)
Q Consensus 426 ~~~l~~~----~~~~~~~~~~~~l~~al~~~~ 453 (482)
.+++..+ .......+..+++.+++++..
T Consensus 241 ~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~ 272 (499)
T 2dhr_A 241 ENLLNEAALLAAREGRRKITMKDLEEAADRVM 272 (499)
T ss_dssp HHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Confidence 9876542 112223345566666666543
No 20
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.94 E-value=2e-26 Score=242.10 Aligned_cols=208 Identities=23% Similarity=0.272 Sum_probs=166.3
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-CCceeeccccccc-
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-GYDLYDLELTAVK- 271 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-~~~i~~l~l~~~~- 271 (482)
.++.+|++|+|.+++++.|.+.+..++..+..|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++.+.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 45688999999999999999999888888887764 34567999999999999999999999999 8999999888762
Q ss_pred -----ChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhh
Q 011573 272 -----DNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNF 344 (482)
Q Consensus 272 -----~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 344 (482)
....++.+|..+ ..|+||||||||.++. .+. ..........++.||..
T Consensus 207 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~---~~~----------------------~~~~~~~~~~~~~lL~~ 261 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG---SRS----------------------ENESEAARRIKTEFLVQ 261 (444)
T ss_dssp -----CCCTHHHHHHHHHHSCSEEEEESCTTTTCC---CSS----------------------CCCCGGGHHHHHHHHTT
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcc---CCC----------------------CccccHHHHHHHHHHHH
Confidence 234567777655 4789999999999752 221 01123355788999999
Q ss_pred hcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCC-cHHHHHHHhc-CCCCCH
Q 011573 345 IDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHN-LFDKIGELLG-EAKMTP 422 (482)
Q Consensus 345 ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~-~~~~i~~l~~-~~~~s~ 422 (482)
||++... ...++||+|||+++.|||+|+| ||+..|++++|+.++|..|++.++...... ....+..++. ..|||+
T Consensus 262 l~~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sg 338 (444)
T 2zan_A 262 MQGVGVD-NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSG 338 (444)
T ss_dssp TTCSSCC-CSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCH
T ss_pred HhCcccC-CCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCH
Confidence 9997532 3568999999999999999999 999999999999999999999998765432 2345666666 459999
Q ss_pred HHHHHHhc
Q 011573 423 ADVAEHLM 430 (482)
Q Consensus 423 adi~~~l~ 430 (482)
+||..++.
T Consensus 339 adl~~l~~ 346 (444)
T 2zan_A 339 ADISIIVR 346 (444)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99997765
No 21
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.94 E-value=1.6e-27 Score=233.08 Aligned_cols=214 Identities=26% Similarity=0.362 Sum_probs=161.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc---
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK--- 271 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~--- 271 (482)
++.+|++++|.+++++.+.+.+ .++..++.|...|...++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIV-DFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHH-HHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCHHHhCCcHHHHHHHHHHH-HHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 4578999999999999997654 568899999999999999999999999999999999999999999999887652
Q ss_pred ---ChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 272 ---DNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 272 ---~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
....++.+|..+ ..++||||||||.+.. .+.... ...........++.||+.+|
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~---~~~~~~------------------~~~~~~~~~~~~~~ll~~l~ 143 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGK---SRAAGG------------------VVSGNDEREQTLNQLLAEMD 143 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC-------------------------------CCCSCSSTTTTTTTTT
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcc---cccccc------------------cCCCchhHHHHHHHHHHHhh
Confidence 122344555544 3689999999999742 211000 00011122345677899999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADV 425 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi 425 (482)
+..+. ...++||+|||.++.||++++|||||+..|++++|+.++|..+++.++..........+..++. ..|++++||
T Consensus 144 ~~~~~-~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl 222 (268)
T 2r62_A 144 GFGSE-NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADL 222 (268)
T ss_dssp CSSCS-CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHH
T ss_pred CcccC-CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHH
Confidence 87432 3458999999999999999999999999999999999999999999986533221112334444 348999999
Q ss_pred HHHhcc
Q 011573 426 AEHLMP 431 (482)
Q Consensus 426 ~~~l~~ 431 (482)
..++..
T Consensus 223 ~~l~~~ 228 (268)
T 2r62_A 223 ANIINE 228 (268)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 22
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.94 E-value=9.7e-26 Score=218.91 Aligned_cols=212 Identities=23% Similarity=0.315 Sum_probs=161.7
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc---
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK--- 271 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~--- 271 (482)
++.+|++++|.++.++.+.+ +..++..+..+...+...++|++|+||||||||++++++|+.++.+++.++...+.
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 89 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 89 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSC
T ss_pred CCCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHH
Confidence 44799999999999999865 45556788899999999999999999999999999999999999988888765441
Q ss_pred ---ChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 272 ---DNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 272 ---~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
....+..+|..+. .|++++|||||.+.. .+... ...........+..+++.|+
T Consensus 90 ~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~---~~~~~-------------------~~~~~~~~~~~~~~ll~~l~ 147 (254)
T 1ixz_A 90 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR---KRGSG-------------------VGGGNDEREQTLNQLLVEMD 147 (254)
T ss_dssp TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-------------------------------CHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhc---ccCcc-------------------ccccchHHHHHHHHHHHHHh
Confidence 2345677787764 589999999998642 11100 00011223456788999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADV 425 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi 425 (482)
|.... ...+++++||+|+.|||+++||||||.+|++++|+.++|..|++.++..........+..++. ..|++++||
T Consensus 148 g~~~~--~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl 225 (254)
T 1ixz_A 148 GFEKD--TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADL 225 (254)
T ss_dssp TCCTT--CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHH
T ss_pred CCCCC--CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHH
Confidence 87542 347889999999999999999999999999999999999999998875432221122344454 459999999
Q ss_pred HHHhcc
Q 011573 426 AEHLMP 431 (482)
Q Consensus 426 ~~~l~~ 431 (482)
..++..
T Consensus 226 ~~~~~~ 231 (254)
T 1ixz_A 226 ENLLNE 231 (254)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 977763
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.93 E-value=5.4e-25 Score=227.26 Aligned_cols=212 Identities=25% Similarity=0.328 Sum_probs=166.8
Q ss_pred eccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc
Q 011573 192 VFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK 271 (482)
Q Consensus 192 ~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~ 271 (482)
...+|.+|++++|.+.+++.|.+.+..++..++.|...+. +++++|||||||||||++|+++|++++.+++.++++.+.
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT 185 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCC-CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh
Confidence 3457789999999999999999999988888888887774 468999999999999999999999999999999998763
Q ss_pred ------ChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHh
Q 011573 272 ------DNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLN 343 (482)
Q Consensus 272 ------~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 343 (482)
....++.+|..+ ..++||||||||.++. .+. ..........+..||.
T Consensus 186 ~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~---~~~----------------------~~~~~~~~~~~~~ll~ 240 (389)
T 3vfd_A 186 SKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLC---ERR----------------------EGEHDASRRLKTEFLI 240 (389)
T ss_dssp ------CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------------------------------CTHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcc---cCC----------------------CccchHHHHHHHHHHH
Confidence 344567777655 4689999999999752 221 1122335667888999
Q ss_pred hhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCc-HHHHHHHhc-CCCCC
Q 011573 344 FIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNL-FDKIGELLG-EAKMT 421 (482)
Q Consensus 344 ~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~-~~~i~~l~~-~~~~s 421 (482)
.++|........++||+|||+++.||++++| ||+..|+++.|+.+++..|++.++......+ ...+..++. ..|++
T Consensus 241 ~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~ 318 (389)
T 3vfd_A 241 EFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYS 318 (389)
T ss_dssp HHHHHC-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCC
T ss_pred HhhcccccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCC
Confidence 9998866545668999999999999999999 9999999999999999999999987654433 345556665 45999
Q ss_pred HHHHHHHhcc
Q 011573 422 PADVAEHLMP 431 (482)
Q Consensus 422 ~adi~~~l~~ 431 (482)
+++|..++..
T Consensus 319 ~~~l~~L~~~ 328 (389)
T 3vfd_A 319 GSDLTALAKD 328 (389)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999876543
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.93 E-value=4.6e-25 Score=225.34 Aligned_cols=209 Identities=23% Similarity=0.335 Sum_probs=164.8
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccC--
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKD-- 272 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~-- 272 (482)
+|.+|++++|.+++++.|.+.+..++..++.|...+ ..++++|||||||||||++|+++|++++.+++.++++.+..
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW 157 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc
Confidence 578899999999999999999998888888777665 55789999999999999999999999999999999987632
Q ss_pred ----hHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 273 ----NTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 273 ----~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
...++.+|..+ ..++||||||||.+.. .+. .+........+..||..++
T Consensus 158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~---~~~----------------------~~~~~~~~~~~~~lL~~l~ 212 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLS---QRG----------------------DGEHESSRRIKTEFLVQLD 212 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTB---C----------------------------CHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhc---cCC----------------------CCcchHHHHHHHHHHHHHh
Confidence 34566666654 4689999999999752 221 0112335567889999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCc-HHHHHHHhc-CCCCCHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNL-FDKIGELLG-EAKMTPAD 424 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~-~~~i~~l~~-~~~~s~ad 424 (482)
+........++||+|||.++.||++++| ||+..++++.|+.+++..+++.++......+ ...+..++. ..||++++
T Consensus 213 ~~~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~d 290 (357)
T 3d8b_A 213 GATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGAD 290 (357)
T ss_dssp C----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHH
T ss_pred cccccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHH
Confidence 8765445678999999999999999999 9999999999999999999999886544332 345566665 45999999
Q ss_pred HHHHhcc
Q 011573 425 VAEHLMP 431 (482)
Q Consensus 425 i~~~l~~ 431 (482)
|..++..
T Consensus 291 l~~l~~~ 297 (357)
T 3d8b_A 291 MTQLCRE 297 (357)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9977653
No 25
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.92 E-value=1.7e-24 Score=213.33 Aligned_cols=212 Identities=23% Similarity=0.316 Sum_probs=161.3
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc---
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK--- 271 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~--- 271 (482)
++.+|++++|.+++++++.+ +..++..+..+...+...++|++|+||||||||+|+++||+.++.+++.++...+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCHHHhCChHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 56889999999999998855 55566788899999999999999999999999999999999999988888765541
Q ss_pred ---ChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 272 ---DNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 272 ---~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
....+..+|..+. .|+++++||||.+.. .+... ...........+..+++.++
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~---~~~~~-------------------~~~~~~~~~~~~~~ll~~ls 171 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR---KRGSG-------------------VGGGNDEREQTLNQLLVEMD 171 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHC---C---------------------------CHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhc---ccccc-------------------cCCcchHHHHHHHHHHHHHh
Confidence 1345667777753 689999999998642 11100 00011223456788899999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADV 425 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi 425 (482)
|... ....+++++||+|+.|||+++|||||+.+|++++|+.++|..|++.++..........+..++. ..|++++||
T Consensus 172 gg~~--~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl 249 (278)
T 1iy2_A 172 GFEK--DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADL 249 (278)
T ss_dssp TCCT--TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHH
T ss_pred CCCC--CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHH
Confidence 8743 2347889999999999999999999999999999999999999998875432221122344444 459999999
Q ss_pred HHHhcc
Q 011573 426 AEHLMP 431 (482)
Q Consensus 426 ~~~l~~ 431 (482)
..++..
T Consensus 250 ~~l~~~ 255 (278)
T 1iy2_A 250 ENLLNE 255 (278)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877663
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.92 E-value=1.1e-24 Score=216.08 Aligned_cols=210 Identities=22% Similarity=0.323 Sum_probs=162.3
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc--
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK-- 271 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~-- 271 (482)
.++.+|++++|.+++++.+.+.+......++.|...+ .+++++||+||||||||++++++|++++.+++.++++.+.
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 4678999999999999999999988888887777665 4468999999999999999999999999999999988762
Q ss_pred ----ChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhh
Q 011573 272 ----DNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFI 345 (482)
Q Consensus 272 ----~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 345 (482)
....++.+|..+ ..|+||||||||.+++ .+. ...........+.||..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~---~~~----------------------~~~~~~~~~~~~~ll~~l 148 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLS---ERS----------------------SSEHEASRRLKTEFLVEF 148 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSB---CC---------------------------CCSHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhcc---ccc----------------------cCcchHHHHHHHHHHHHH
Confidence 234456666554 4789999999999753 111 001122345677899999
Q ss_pred cccccC-CCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCc-HHHHHHHhc-CCCCCH
Q 011573 346 DGLWSA-CGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNL-FDKIGELLG-EAKMTP 422 (482)
Q Consensus 346 dg~~s~-~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~-~~~i~~l~~-~~~~s~ 422 (482)
|+.... .+..++||+|||.++.||++++| ||+..+++++|+.+++..|++.++....... ...+..++. ..|+++
T Consensus 149 ~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~ 226 (297)
T 3b9p_A 149 DGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSG 226 (297)
T ss_dssp HHCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCH
T ss_pred hcccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCH
Confidence 987542 12458899999999999999999 9999999999999999999999887654333 334555555 459999
Q ss_pred HHHHHHhcc
Q 011573 423 ADVAEHLMP 431 (482)
Q Consensus 423 adi~~~l~~ 431 (482)
++|..++..
T Consensus 227 ~~l~~l~~~ 235 (297)
T 3b9p_A 227 SDLTALAKD 235 (297)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876653
No 27
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.92 E-value=7.2e-26 Score=225.21 Aligned_cols=171 Identities=17% Similarity=0.170 Sum_probs=123.1
Q ss_pred HhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc------ChHHHHHHHHhc------CCCeEEEEeCCc
Q 011573 228 RIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK------DNTELRKLLIET------SSKSIIVIEDID 295 (482)
Q Consensus 228 ~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~------~~~~L~~l~~~~------~~~sIl~iDdiD 295 (482)
..|.++++|+|||||||||||++|+++|++++.+++.++++.+. ....++.+|..+ ..||||||||||
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 34778889999999999999999999999999999999988763 234577778666 278999999999
Q ss_pred ccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhccccc---------CCCCceEEEEecCCcC
Q 011573 296 CSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWS---------ACGGERLIVFTTNYIE 366 (482)
Q Consensus 296 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s---------~~~~~~iiI~TTN~~~ 366 (482)
.+.. ++.. ........+...+.||+.||+... ....+++||+|||+++
T Consensus 110 ~~~~---~~~~--------------------~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~ 166 (293)
T 3t15_A 110 AGAG---RMGG--------------------TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS 166 (293)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC
T ss_pred hhcC---CCCC--------------------CccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc
Confidence 9752 2110 001122345677889999985531 1234589999999999
Q ss_pred cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhcCCCCCHHHHH
Q 011573 367 KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLGEAKMTPADVA 426 (482)
Q Consensus 367 ~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~~~~~s~adi~ 426 (482)
.||++|+||||||.+|+ .|+.++|..|++.++.... .....++.+.. +|++++|.
T Consensus 167 ~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~~~-~~~~~l~~~~~--~~~~~~l~ 221 (293)
T 3t15_A 167 TLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRTDN-VPAEDVVKIVD--NFPGQSID 221 (293)
T ss_dssp C--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGGGC-CCHHHHHHHHH--HSCSCCHH
T ss_pred cCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccCCC-CCHHHHHHHhC--CCCcccHH
Confidence 99999999999999997 4799999999999886433 23455555544 66766664
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.92 E-value=2.2e-27 Score=266.01 Aligned_cols=213 Identities=19% Similarity=0.285 Sum_probs=167.1
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccc----
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV---- 270 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~---- 270 (482)
+..+|+++++.+++|+.|.+.+..++..+..|.+.|+.+++++|||||||||||++++++|++++.+++.++++.+
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~ 551 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCC
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhh
Confidence 4478999999999999998888777778888888999999999999999999999999999999999999998876
Q ss_pred --cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 271 --KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 271 --~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
.....++.+|..+. .||||||||||.++. .+... ..........+++.||+.||
T Consensus 552 ~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~---~r~~~-------------------~~~~~~~~~~v~~~LL~~ld 609 (806)
T 1ypw_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIAK---ARGGN-------------------IGDGGGAADRVINQILTEMD 609 (806)
T ss_dssp TTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCC---TTTTC-------------------CSHHHHHHHHHHHHHHTTCC
T ss_pred cCccHHHHHHHHHHHHhcCCeEEEEEChhhhhh---hccCC-------------------CCCcchhHHHHHHHHHHHHh
Confidence 34567888888764 689999999999752 22100 00112335678899999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADV 425 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi 425 (482)
++... .+++||+|||+++.||||++|||||+.+|++++|+.+++..|++.++..........+..++. ..|||++||
T Consensus 610 ~~~~~--~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi 687 (806)
T 1ypw_A 610 GMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADL 687 (806)
T ss_dssp --------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHH
T ss_pred ccccc--CCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHH
Confidence 98553 568999999999999999999999999999999999999999999986533221122334444 358999999
Q ss_pred HHHhcc
Q 011573 426 AEHLMP 431 (482)
Q Consensus 426 ~~~l~~ 431 (482)
..++..
T Consensus 688 ~~l~~~ 693 (806)
T 1ypw_A 688 TEICQR 693 (806)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987764
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.88 E-value=6.3e-23 Score=229.89 Aligned_cols=209 Identities=22% Similarity=0.302 Sum_probs=170.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc---
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK--- 271 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~--- 271 (482)
++.+|++|+|.+++++.|.+.+..++..++.|..+++++++++|||||||||||+++++||+.++.+++.+++..+.
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999877652
Q ss_pred ---ChHHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc
Q 011573 272 ---DNTELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID 346 (482)
Q Consensus 272 ---~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 346 (482)
....++.+|..+ ..|+|+||||||.++. .+. ..........+..|+..++
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~---~~~----------------------~~~~~~~~~~~~~Ll~ll~ 333 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAP---KRE----------------------KTHGEVERRIVSQLLTLMD 333 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSC---TTS----------------------CCCSHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhh---ccc----------------------cccchHHHHHHHHHHHHhh
Confidence 235677777765 3789999999999753 211 0011234567788999999
Q ss_pred ccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHH
Q 011573 347 GLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADV 425 (482)
Q Consensus 347 g~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi 425 (482)
|.... ..+++|+|||+++.||+++.|+|||+..+.++.|+.++|..+++.+...........+..++. ..+++++++
T Consensus 334 g~~~~--~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl 411 (806)
T 1ypw_A 334 GLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADL 411 (806)
T ss_dssp SSCTT--SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHH
T ss_pred hhccc--ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHH
Confidence 98643 458999999999999999999999999999999999999999998876543222222344444 459999999
Q ss_pred HHHhc
Q 011573 426 AEHLM 430 (482)
Q Consensus 426 ~~~l~ 430 (482)
...+.
T Consensus 412 ~~l~~ 416 (806)
T 1ypw_A 412 AALCS 416 (806)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 86654
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.81 E-value=7.4e-22 Score=208.02 Aligned_cols=213 Identities=11% Similarity=0.070 Sum_probs=126.1
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhC--Cceeeccccccc-
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLG--YDLYDLELTAVK- 271 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~--~~i~~l~l~~~~- 271 (482)
+...|++++|.+++++.+...+..+ ..|..+++|+|||||||||||++|+++|++++ .+++.++++.+.
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3456899999999999886555322 24667789999999999999999999999999 899999888763
Q ss_pred ----ChHHHHHHHHhc-----CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHH
Q 011573 272 ----DNTELRKLLIET-----SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLL 342 (482)
Q Consensus 272 ----~~~~L~~l~~~~-----~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 342 (482)
....++.+|..+ ..||||||||||+++. .|..... +..+...... ...-..............++
T Consensus 104 ~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~---~r~~~~~--~~~~~~~~~~-~~~l~~~~~~~~~~~~~~ll 177 (456)
T 2c9o_A 104 TEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTP---CETENPM--GGYGKTISHV-IIGLKTAKGTKQLKLDPSIF 177 (456)
T ss_dssp SSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEE---C----------------CE-EEEEEETTEEEEEEECHHHH
T ss_pred HhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhccc---ccCCCCC--CCcchHHHHH-HHHHhccccchhHhhhHHHH
Confidence 223488888876 4789999999999763 3321000 0000000000 00000000011112223455
Q ss_pred hhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeee--EEEccCCC--HHHHHHHHHHhccccCCCcHHHHHHHhcC-
Q 011573 343 NFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDK--HIELSHCS--YEAFKVLAKNYLNIESHNLFDKIGELLGE- 417 (482)
Q Consensus 343 ~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~--~I~~~~p~--~~~~~~l~~~~l~~~~~~~~~~i~~l~~~- 417 (482)
..++......+..++|++|||+++.+|+++.||||||. .+.++.|+ .++|+.|++.+. ..++..++..
T Consensus 178 ~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~-------~~dl~~~a~~t 250 (456)
T 2c9o_A 178 ESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT-------LHDLDVANARP 250 (456)
T ss_dssp HHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE-------HHHHHHTC---
T ss_pred HHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH-------HHHHHHHHHhC
Confidence 55552222234445566899999999999999999998 55667774 456766655443 1245555553
Q ss_pred CCCCHHHHHHHhc
Q 011573 418 AKMTPADVAEHLM 430 (482)
Q Consensus 418 ~~~s~adi~~~l~ 430 (482)
.| +|||..++.
T Consensus 251 ~g--gadl~~l~~ 261 (456)
T 2c9o_A 251 QG--GQDILSMMG 261 (456)
T ss_dssp -------------
T ss_pred CC--hhHHHHHHh
Confidence 36 889887763
No 31
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.81 E-value=1e-18 Score=176.17 Aligned_cols=191 Identities=15% Similarity=0.132 Sum_probs=145.9
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccC
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKD 272 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~ 272 (482)
.-.|.+|++++|.+..++.+...+...... .....++||+||||||||++|+++|+.++.+++.+++..+..
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~ 93 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK 93 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc
Confidence 346789999999999999887777654321 234568999999999999999999999999999999998888
Q ss_pred hHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhccccc--
Q 011573 273 NTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWS-- 350 (482)
Q Consensus 273 ~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s-- 350 (482)
...+..++.....+++|||||||.+. ......|+..++...-
T Consensus 94 ~~~~~~~~~~~~~~~vl~lDEi~~l~------------------------------------~~~~~~Ll~~l~~~~~~~ 137 (338)
T 3pfi_A 94 SGDLAAILTNLSEGDILFIDEIHRLS------------------------------------PAIEEVLYPAMEDYRLDI 137 (338)
T ss_dssp HHHHHHHHHTCCTTCEEEEETGGGCC------------------------------------HHHHHHHHHHHHTSCC--
T ss_pred hhHHHHHHHhccCCCEEEEechhhcC------------------------------------HHHHHHHHHHHHhccchh
Confidence 88899999888899999999999862 1234456666654210
Q ss_pred ------------CCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcH-HHHHHHhcC
Q 011573 351 ------------ACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLF-DKIGELLGE 417 (482)
Q Consensus 351 ------------~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~-~~i~~l~~~ 417 (482)
.....+++|++||....++++|++ ||+..|+|++|+.+++..+++.++........ +.+..++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~ 215 (338)
T 3pfi_A 138 IIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKR 215 (338)
T ss_dssp -------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHT
T ss_pred hcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 000137899999999999999999 99999999999999999999988765443332 233444444
Q ss_pred CCCCHHHHHHHh
Q 011573 418 AKMTPADVAEHL 429 (482)
Q Consensus 418 ~~~s~adi~~~l 429 (482)
.+-.+.++.+.+
T Consensus 216 ~~G~~r~l~~~l 227 (338)
T 3pfi_A 216 SRSTPRIALRLL 227 (338)
T ss_dssp TTTCHHHHHHHH
T ss_pred HCcCHHHHHHHH
Confidence 455566655444
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.79 E-value=3.6e-18 Score=169.75 Aligned_cols=170 Identities=19% Similarity=0.251 Sum_probs=130.2
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCc---cccccCCCCchHHHHHHHHHHHhC-------Cceeecccccc
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKR---GYLLYGPPGTGKSTMIAAMANLLG-------YDLYDLELTAV 270 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~r---g~LL~GPpGtGKTsl~~aiA~~l~-------~~i~~l~l~~~ 270 (482)
+++|.+++|+.|.+.+..+.. +..+.+.|+..++ ++|||||||||||++|+++|+.++ .+++.+++..+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 689999999999887766553 6677777765543 599999999999999999999983 37888887766
Q ss_pred c------ChHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhh
Q 011573 271 K------DNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNF 344 (482)
Q Consensus 271 ~------~~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 344 (482)
. ....+..+|..+ .++||||||||.++. .+. ........+..|++.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~---~~~------------------------~~~~~~~~~~~Ll~~ 162 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYR---PDN------------------------ERDYGQEAIEILLQV 162 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCC---CC---------------------------CCTHHHHHHHHHH
T ss_pred hhhcccccHHHHHHHHHhc-CCCEEEEEChhhhcc---CCC------------------------cccccHHHHHHHHHH
Confidence 2 234566677665 578999999999752 110 112245577888988
Q ss_pred hcccccCCCCceEEEEecCCcC-----cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCC
Q 011573 345 IDGLWSACGGERLIVFTTNYIE-----KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESH 405 (482)
Q Consensus 345 ldg~~s~~~~~~iiI~TTN~~~-----~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~ 405 (482)
|+.. ..+.++|+|||..+ .++|+|++ ||+.+|+|+.|+.+++..|++.++.....
T Consensus 163 l~~~----~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~ 222 (309)
T 3syl_A 163 MENN----RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNY 222 (309)
T ss_dssp HHHC----TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred HhcC----CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCC
Confidence 8864 24578889998754 36899999 99999999999999999999999875443
No 33
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.76 E-value=6.8e-20 Score=190.76 Aligned_cols=163 Identities=16% Similarity=0.169 Sum_probs=72.0
Q ss_pred cccccChHHHHHHHHHHHHHhhCHHHHHHhCC-CcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc-------
Q 011573 200 QTLAMEPAEKKEIIDDLIAFSKSEDFYARIGR-AWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK------- 271 (482)
Q Consensus 200 ~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~-~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~------- 271 (482)
+.|+|.++.|+.|...+...+++...+...+. .+++++||+||||||||++++++|+.++.+++.++++.+.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 36899999999998888766555444443333 3578999999999999999999999999999999876542
Q ss_pred -ChHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhccccc
Q 011573 272 -DNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWS 350 (482)
Q Consensus 272 -~~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s 350 (482)
....++.+|..+.. ++.+|++|...+ . ........+++.||+.|||+.+
T Consensus 95 d~e~~lr~lf~~a~~--~~~~De~d~~~~---~-------------------------~~~~~e~rvl~~LL~~~dg~~~ 144 (444)
T 1g41_A 95 EVDSIIRDLTDSAMK--LVRQQEIAKNRA---R-------------------------AEDVAEERILDALLPPAKNQWG 144 (444)
T ss_dssp CTHHHHHHHHHHHHH--HHHHHHHHSCC----------------------------------------------------
T ss_pred cHHHHHHHHHHHHHh--cchhhhhhhhhc---c-------------------------chhhHHHHHHHHHHHHhhcccc
Confidence 34567777766532 234777776421 1 0122346789999999999965
Q ss_pred CCCCceEEEEe-cCCcCcCCHhhhcCCCeeeEEEccCCCHH-HHHHHH
Q 011573 351 ACGGERLIVFT-TNYIEKLDPALIRKGRMDKHIELSHCSYE-AFKVLA 396 (482)
Q Consensus 351 ~~~~~~iiI~T-TN~~~~LD~aL~RpGR~d~~I~~~~p~~~-~~~~l~ 396 (482)
.. .+ +++ ||+++.|||||+||||||.+|+++.|+.. .+..|+
T Consensus 145 ~~---~v-~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 145 EV---EN-HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ------------------------------------------------
T ss_pred cc---cc-ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 32 23 454 99999999999999999999999999887 555554
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.76 E-value=6.9e-18 Score=168.67 Aligned_cols=191 Identities=17% Similarity=0.129 Sum_probs=144.0
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccCh
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDN 273 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~ 273 (482)
-.|.+|++++|.+..++.+...+..... .+ ...+++||+||||||||++++++|+.++.+++.+++..+...
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 77 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKA-------RK-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHH-------HC-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHc-------cC-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh
Confidence 3677999999999998888776654422 11 235789999999999999999999999999999999988888
Q ss_pred HHHHHHHHh-cCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccc---
Q 011573 274 TELRKLLIE-TSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLW--- 349 (482)
Q Consensus 274 ~~L~~l~~~-~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~--- 349 (482)
..+...|.. ...+++|||||||.+. ......|+..++...
T Consensus 78 ~~l~~~l~~~~~~~~~l~lDEi~~l~------------------------------------~~~~~~L~~~l~~~~~~~ 121 (324)
T 1hqc_A 78 GDLAAILANSLEEGDILFIDEIHRLS------------------------------------RQAEEHLYPAMEDFVMDI 121 (324)
T ss_dssp HHHHHHHTTTCCTTCEEEETTTTSCC------------------------------------HHHHHHHHHHHHHSEEEE
T ss_pred HHHHHHHHHhccCCCEEEEECCcccc------------------------------------cchHHHHHHHHHhhhhHH
Confidence 888888877 6788999999999862 112334555554321
Q ss_pred --cC---------CCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcH-HHHHHHhcC
Q 011573 350 --SA---------CGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLF-DKIGELLGE 417 (482)
Q Consensus 350 --s~---------~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~-~~i~~l~~~ 417 (482)
.. ....+++|+|||.+..++++|.+ ||+..+.++.|+.+++..+++.++........ +.+..++..
T Consensus 122 v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~ 199 (324)
T 1hqc_A 122 VIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRR 199 (324)
T ss_dssp CCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred hccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 00 01246899999999999999999 99889999999999999999998765443333 334455554
Q ss_pred CCCCHHHHHHHhc
Q 011573 418 AKMTPADVAEHLM 430 (482)
Q Consensus 418 ~~~s~adi~~~l~ 430 (482)
.+-.|.++.+.+.
T Consensus 200 ~~G~~r~l~~~l~ 212 (324)
T 1hqc_A 200 SRGTMRVAKRLFR 212 (324)
T ss_dssp SCSCHHHHHHHHH
T ss_pred ccCCHHHHHHHHH
Confidence 4556777776553
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.72 E-value=6.2e-17 Score=158.38 Aligned_cols=166 Identities=19% Similarity=0.212 Sum_probs=113.7
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc---C----h
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK---D----N 273 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~---~----~ 273 (482)
.+++.+...+.++.....+. ..+...+...++++|||||||||||++|+++|+.++.+++.+++.+.- . .
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~ 110 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKC 110 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHH
Confidence 45566555566655432221 223344566788999999999999999999999999999988776421 1 2
Q ss_pred HHHHHHHHhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccC
Q 011573 274 TELRKLLIET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSA 351 (482)
Q Consensus 274 ~~L~~l~~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~ 351 (482)
..++.+|..+ ..++||||||||.++. .+. .........+..|+..+++...
T Consensus 111 ~~~~~~~~~~~~~~~~vl~iDEid~l~~---~~~-----------------------~~~~~~~~~l~~L~~~~~~~~~- 163 (272)
T 1d2n_A 111 QAMKKIFDDAYKSQLSCVVVDDIERLLD---YVP-----------------------IGPRFSNLVLQALLVLLKKAPP- 163 (272)
T ss_dssp HHHHHHHHHHHTSSEEEEEECCHHHHTT---CBT-----------------------TTTBCCHHHHHHHHHHTTCCCS-
T ss_pred HHHHHHHHHHHhcCCcEEEEEChhhhhc---cCC-----------------------CChhHHHHHHHHHHHHhcCccC-
Confidence 4567777664 4689999999999752 221 0111234455666677776532
Q ss_pred CCCceEEEEecCCcCcCCH-hhhcCCCeeeEEEccCCCH-HHHHHHHHH
Q 011573 352 CGGERLIVFTTNYIEKLDP-ALIRKGRMDKHIELSHCSY-EAFKVLAKN 398 (482)
Q Consensus 352 ~~~~~iiI~TTN~~~~LD~-aL~RpGR~d~~I~~~~p~~-~~~~~l~~~ 398 (482)
.+..++||+|||.++.||+ ++.+ ||+..|++|.++. ++...++..
T Consensus 164 ~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 164 QGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp TTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH
T ss_pred CCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh
Confidence 2445789999999999998 5555 9999999987765 555555554
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.72 E-value=3.2e-17 Score=162.35 Aligned_cols=174 Identities=17% Similarity=0.221 Sum_probs=122.1
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHH-hCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccC-------
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYAR-IGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKD------- 272 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~-~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~------- 272 (482)
.++|.+++++.+...+...+........ .+...+.++||+||||||||++++++|+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 4789999999998777654322110000 01124578999999999999999999999999999998876632
Q ss_pred -hHHHHHHHHhc-------CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhh
Q 011573 273 -NTELRKLLIET-------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNF 344 (482)
Q Consensus 273 -~~~L~~l~~~~-------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 344 (482)
...++.++... ..++||||||||.+.. ... ............+.|+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~---~~~---------------------~~~~~~~~~~~~~~Ll~~ 151 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICK---KGE---------------------YSGADVSREGVQRDLLPL 151 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSC---CSS---------------------CCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCc---ccc---------------------ccccchhHHHHHHHHHHH
Confidence 34466666543 2479999999999742 110 000111123346778888
Q ss_pred hcccccC------CCCceEEEEe----cCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhc
Q 011573 345 IDGLWSA------CGGERLIVFT----TNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYL 400 (482)
Q Consensus 345 ldg~~s~------~~~~~iiI~T----TN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l 400 (482)
+++.... ....+++|+| ++.+..++|+|++ ||+.+|+|++|+.+++..|++..+
T Consensus 152 le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~ 215 (310)
T 1ofh_A 152 VEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPH 215 (310)
T ss_dssp HHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSST
T ss_pred hcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhH
Confidence 8864210 1134678887 5688899999999 999999999999999999998643
No 37
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.71 E-value=3e-16 Score=146.47 Aligned_cols=154 Identities=16% Similarity=0.202 Sum_probs=114.8
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-----CCceeeccc
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-----GYDLYDLEL 267 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-----~~~i~~l~l 267 (482)
...|.+|++++|.++.++.+.+.+. . + ...++||+||||||||++++++|+.+ ...++.+++
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~----~-------~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVE----R-------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHH----T-------T--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHh----C-------C--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 4578899999999888877755442 2 1 12359999999999999999999986 345667777
Q ss_pred ccccChHHHHHHHHh--------cCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHH
Q 011573 268 TAVKDNTELRKLLIE--------TSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLS 339 (482)
Q Consensus 268 ~~~~~~~~L~~l~~~--------~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 339 (482)
........+...+.. ...+.||+|||+|.+.. ....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------------------------------~~~~ 120 (226)
T 2chg_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------------------------------DAQA 120 (226)
T ss_dssp TCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH------------------------------------HHHH
T ss_pred ccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH------------------------------------HHHH
Confidence 665555444444332 14689999999998521 1234
Q ss_pred HHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 340 GLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 340 ~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
.|+..++.. .....+|+|||.++.+++++.+ |+. .++++.|+.++...++..++..
T Consensus 121 ~l~~~l~~~----~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~ 176 (226)
T 2chg_A 121 ALRRTMEMY----SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEK 176 (226)
T ss_dssp HHHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc----CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHH
Confidence 566666653 2347889999999999999999 998 9999999999999999887653
No 38
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.71 E-value=5.4e-17 Score=162.61 Aligned_cols=157 Identities=21% Similarity=0.186 Sum_probs=120.5
Q ss_pred CceeeeccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 187 NWVHVVFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 187 ~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
.|. ....|.+|++++|.++.++.+...+. .| ..+..||++||||||||++++++|++++.+++.++
T Consensus 15 ~~~--~k~rP~~~~~ivg~~~~~~~l~~~l~-----------~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 15 ILE--QKYRPSTIDECILPAFDKETFKSITS-----------KG-KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp SHH--HHSCCCSTTTSCCCHHHHHHHHHHHH-----------TT-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred hHH--HhhCCCCHHHHhCcHHHHHHHHHHHH-----------cC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 454 34578999999999988877765543 12 34567899999999999999999999999999999
Q ss_pred cccccChHHHHHHHHhc----C---CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHH
Q 011573 267 LTAVKDNTELRKLLIET----S---SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLS 339 (482)
Q Consensus 267 l~~~~~~~~L~~l~~~~----~---~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 339 (482)
++... ...++..+... + .+.||+|||+|.+. + .....
T Consensus 81 ~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~---~--------------------------------~~~~~ 124 (324)
T 3u61_B 81 GSDCK-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG---L--------------------------------AESQR 124 (324)
T ss_dssp TTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG---G--------------------------------HHHHH
T ss_pred ccccC-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccC---c--------------------------------HHHHH
Confidence 87754 55555544332 2 67999999999862 0 12345
Q ss_pred HHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhc
Q 011573 340 GLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYL 400 (482)
Q Consensus 340 ~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l 400 (482)
.|+..++... ....+|+|||.+..++++|++ ||. .++|+.|+.+++..++..++
T Consensus 125 ~L~~~le~~~----~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 125 HLRSFMEAYS----SNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp HHHHHHHHHG----GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 5777777542 346889999999999999999 996 79999999999877776654
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.70 E-value=7.8e-17 Score=164.00 Aligned_cols=184 Identities=16% Similarity=0.147 Sum_probs=124.0
Q ss_pred CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC--ceeeccccccc---
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY--DLYDLELTAVK--- 271 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~--~i~~l~l~~~~--- 271 (482)
.+|++++|.+..++.+...+ ..+. .|..+++++|||||||||||++|+++|+.++. +++.+++..+.
T Consensus 41 ~~~~~ivG~~~~~~~l~~l~-~~~~-------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 41 QASQGMVGQLAARRAAGVVL-EMIR-------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE 112 (368)
T ss_dssp SEETTEESCHHHHHHHHHHH-HHHH-------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred cchhhccChHHHHHHHHHHH-HHHH-------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence 44999999999988764332 2222 24555689999999999999999999999975 55555543310
Q ss_pred -----------------------------------------------C-----hHHHHHHHHhcC-----------CCeE
Q 011573 272 -----------------------------------------------D-----NTELRKLLIETS-----------SKSI 288 (482)
Q Consensus 272 -----------------------------------------------~-----~~~L~~l~~~~~-----------~~sI 288 (482)
. ...++..+.... .|+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 192 (368)
T 3uk6_A 113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV 192 (368)
T ss_dssp SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence 0 223444443321 2689
Q ss_pred EEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEec------
Q 011573 289 IVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTT------ 362 (482)
Q Consensus 289 l~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TT------ 362 (482)
|||||||.+. ...++.|+..++.. ...+++++|.
T Consensus 193 l~IDEi~~l~------------------------------------~~~~~~L~~~le~~----~~~~~ii~t~~~~~~i 232 (368)
T 3uk6_A 193 LFIDEVHMLD------------------------------------IESFSFLNRALESD----MAPVLIMATNRGITRI 232 (368)
T ss_dssp EEEESGGGSB------------------------------------HHHHHHHHHHTTCT----TCCEEEEEESCSEEEC
T ss_pred EEEhhccccC------------------------------------hHHHHHHHHHhhCc----CCCeeeeecccceeee
Confidence 9999999862 22455677776653 1234444443
Q ss_pred -----CCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHH-HHHHHhcCCC-CCHHHHHHHhcc
Q 011573 363 -----NYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFD-KIGELLGEAK-MTPADVAEHLMP 431 (482)
Q Consensus 363 -----N~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~-~i~~l~~~~~-~s~adi~~~l~~ 431 (482)
|.+..|+++|++ ||.. |.|++|+.+++..+++.++........+ .+..++.... -+++++..+|..
T Consensus 233 ~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~ 305 (368)
T 3uk6_A 233 RGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITA 305 (368)
T ss_dssp BTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred eccCCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 357889999999 9985 8999999999999999888654443333 3444444443 678887766543
No 40
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.70 E-value=4.5e-16 Score=146.86 Aligned_cols=182 Identities=18% Similarity=0.225 Sum_probs=125.1
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc-----------
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD----------- 261 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~----------- 261 (482)
...|..|+++++.+..++.+...+.. | ..++.+||+||||||||++++++|+.++..
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 83 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 83 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 34678899999999888877655532 1 123579999999999999999999988542
Q ss_pred -------------eeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCccc
Q 011573 262 -------------LYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQ 322 (482)
Q Consensus 262 -------------i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~ 322 (482)
++.++.........++.++.... .+.+|+|||+|.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~------------------------ 139 (250)
T 1njg_A 84 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------------------ 139 (250)
T ss_dssp HHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC------------------------
T ss_pred HHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc------------------------
Confidence 22222222223345667766542 57899999999851
Q ss_pred ccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 323 KLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 323 ~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
...+..|+..++.. ....++|+|||.+..+++++.+ |+ ..|+++.++.++...++..++..
T Consensus 140 ------------~~~~~~l~~~l~~~----~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 140 ------------RHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp ------------HHHHHHHHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHhcC----CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHh
Confidence 12455677777653 3457899999999999999998 76 58999999999999999988754
Q ss_pred cCCCc-HHHHHHHhcCCCCCHHHHHHHh
Q 011573 403 ESHNL-FDKIGELLGEAKMTPADVAEHL 429 (482)
Q Consensus 403 ~~~~~-~~~i~~l~~~~~~s~adi~~~l 429 (482)
..... .+.+..++..++=.|.++...+
T Consensus 201 ~~~~~~~~~~~~l~~~~~G~~~~~~~~~ 228 (250)
T 1njg_A 201 EHIAHEPRALQLLARAAEGSLRDALSLT 228 (250)
T ss_dssp TTCCBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33222 2223334433333566555443
No 41
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.68 E-value=2.2e-17 Score=168.49 Aligned_cols=175 Identities=22% Similarity=0.257 Sum_probs=118.1
Q ss_pred cccChHHHHHHHHHHHHHhhCHHHHH-HhCC-CcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccC-------
Q 011573 202 LAMEPAEKKEIIDDLIAFSKSEDFYA-RIGR-AWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKD------- 272 (482)
Q Consensus 202 l~~~~~~k~~i~~~l~~fl~~~~~y~-~~g~-~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~------- 272 (482)
|+|.+.+++.|...+........... ..+. ..++++||+||||||||++|++||+.++.+++.++++.+..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 68999999998887764443211000 0111 25678999999999999999999999999999999987642
Q ss_pred -hHHHHHHHHhc------CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhh
Q 011573 273 -NTELRKLLIET------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFI 345 (482)
Q Consensus 273 -~~~L~~l~~~~------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 345 (482)
...+..++... ..++||||||||.+.. .+... ..+........++.||..|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~---~~~~~-------------------~~~~~~~~~~~~~~Ll~~l 154 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR---KSDNP-------------------SITRDVSGEGVQQALLKLI 154 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCC---CSSCC----------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcc---ccccc-------------------ccccccchHHHHHHHHHHh
Confidence 23456666554 3578999999998742 11100 0001112234788899999
Q ss_pred cccccC-----------------CCCceEEEEecCCc----------Cc-------------------------------
Q 011573 346 DGLWSA-----------------CGGERLIVFTTNYI----------EK------------------------------- 367 (482)
Q Consensus 346 dg~~s~-----------------~~~~~iiI~TTN~~----------~~------------------------------- 367 (482)
||.... ...++++|+|+|.. ..
T Consensus 155 eg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l 234 (363)
T 3hws_A 155 EGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDL 234 (363)
T ss_dssp HCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHH
T ss_pred cCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHH
Confidence 964210 11234455555532 11
Q ss_pred ----CCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhc
Q 011573 368 ----LDPALIRKGRMDKHIELSHCSYEAFKVLAKNYL 400 (482)
Q Consensus 368 ----LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l 400 (482)
++|+|+. |||..+.|.+|+.+.+..|+...+
T Consensus 235 ~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~~~ 269 (363)
T 3hws_A 235 IKFGLIPEFIG--RLPVVATLNELSEEALIQILKEPK 269 (363)
T ss_dssp HHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSST
T ss_pred HHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHHHH
Confidence 7899998 999999999999999999998743
No 42
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.67 E-value=8.9e-17 Score=146.54 Aligned_cols=152 Identities=20% Similarity=0.288 Sum_probs=105.2
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----------CCceee
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----------GYDLYD 264 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----------~~~i~~ 264 (482)
.|.+|++++|.++..+.+.+.+.. ..++++||+||||||||++++++|+.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 467899999998877777554321 235789999999999999999999997 678888
Q ss_pred cccccccC--------hHHHHHHHHh---cCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccc
Q 011573 265 LELTAVKD--------NTELRKLLIE---TSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNN 333 (482)
Q Consensus 265 l~l~~~~~--------~~~L~~l~~~---~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (482)
+++..+.. ...+..++.. ...++||+|||+|.+.+ .+. ......
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~---~~~----------------------~~~~~~ 138 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVG---AGK----------------------ADGAMD 138 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------------------------------CCC
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhc---cCc----------------------ccchHH
Confidence 87765421 2234555543 35688999999999742 110 000011
Q ss_pred hHHHHHHHHhhhcccccCCCCceEEEEecCCcC-----cCCHhhhcCCCeeeEEEccCCCHHHHHHHH
Q 011573 334 SQVTLSGLLNFIDGLWSACGGERLIVFTTNYIE-----KLDPALIRKGRMDKHIELSHCSYEAFKVLA 396 (482)
Q Consensus 334 ~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~-----~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~ 396 (482)
.... |...++. .+..+|+|||.++ .+|++|++ ||+ .|+++.|+.+++.+|+
T Consensus 139 ~~~~---l~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 139 AGNM---LKPALAR------GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CHHH---HHHHHHT------TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred HHHH---HHHhhcc------CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 1122 2222221 2467888888876 78999999 998 7999999999988764
No 43
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.66 E-value=5.8e-16 Score=166.37 Aligned_cols=160 Identities=19% Similarity=0.221 Sum_probs=112.1
Q ss_pred ccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccChH----
Q 011573 199 FQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNT---- 274 (482)
Q Consensus 199 ~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~---- 274 (482)
.++++|.+++++.+.+.+....-. ... ....+||+||||||||+++++||+.++.++..+++..+....
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~------~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLT------KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHS------SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhc------ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 355888899888875544321111 111 345799999999999999999999999999999887753321
Q ss_pred -----------HHHHHHHhcC-CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHH
Q 011573 275 -----------ELRKLLIETS-SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLL 342 (482)
Q Consensus 275 -----------~L~~l~~~~~-~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 342 (482)
.+...|..+. ...||||||||.+.. .+ .....+.||
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~---~~-----------------------------~~~~~~~LL 200 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSS---DF-----------------------------RGDPSSAML 200 (543)
T ss_dssp -----------CHHHHHHTTCSSSEEEEEEESSSCC-----------------------------------------CCG
T ss_pred HHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhh---hh-----------------------------ccCHHHHHH
Confidence 2334455543 455999999999742 11 011345678
Q ss_pred hhhcccccC-----------CCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhc
Q 011573 343 NFIDGLWSA-----------CGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYL 400 (482)
Q Consensus 343 ~~ldg~~s~-----------~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l 400 (482)
..||..... .-..++||+|||.++.|||+|++ ||+ .|+|+.|+.+++..|++.++
T Consensus 201 ~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 201 EVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp GGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred HHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 877753211 01357999999999999999999 997 79999999999999999987
No 44
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.66 E-value=1.1e-15 Score=153.71 Aligned_cols=153 Identities=17% Similarity=0.176 Sum_probs=108.8
Q ss_pred CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHH
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTEL 276 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L 276 (482)
..++.++|.+++++.+...+.. .+++|||||||||||++++++|+.++.+++.++++.......+
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence 3457788988888777655432 3689999999999999999999999999998887533222222
Q ss_pred HHHH--H-------hcCC---CeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhh
Q 011573 277 RKLL--I-------ETSS---KSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNF 344 (482)
Q Consensus 277 ~~l~--~-------~~~~---~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 344 (482)
.... . ..+. .+||||||||.+- ....+.|+..
T Consensus 89 ~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~------------------------------------~~~~~~Ll~~ 132 (331)
T 2r44_A 89 IGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSP------------------------------------AKVQSALLEC 132 (331)
T ss_dssp HEEEEEETTTTEEEEEECTTCSSEEEEETGGGSC------------------------------------HHHHHHHHHH
T ss_pred CCceeecCCCCceEeccCcccccEEEEEccccCC------------------------------------HHHHHHHHHH
Confidence 1100 0 0112 3799999999852 1234556666
Q ss_pred hccc-------ccCCCCceEEEEecCCcC-----cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 345 IDGL-------WSACGGERLIVFTTNYIE-----KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 345 ldg~-------~s~~~~~~iiI~TTN~~~-----~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
|+.. ....+...++|+|+|..+ .|+++|++ ||+.++.+++|+.+++..|++..+..
T Consensus 133 l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 133 MQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp HHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred HhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 5521 111233467888888554 38999999 99999999999999999999998764
No 45
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.64 E-value=1.6e-15 Score=150.51 Aligned_cols=160 Identities=16% Similarity=0.279 Sum_probs=114.7
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccChHHHH
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDNTELR 277 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~~~L~ 277 (482)
.++|.+..++.+...+......- .....+...+||+||||||||++|+++|+.+ +.+++.++++.+.......
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~----~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGL----KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTC----SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCC----CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 46788888888877776543210 0001123469999999999999999999998 5678888888775433333
Q ss_pred HHHH---------------h---cCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHH
Q 011573 278 KLLI---------------E---TSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLS 339 (482)
Q Consensus 278 ~l~~---------------~---~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 339 (482)
.++. . ....+||||||||.+- ....+
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~------------------------------------~~~~~ 137 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH------------------------------------PDVFN 137 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC------------------------------------HHHHH
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC------------------------------------HHHHH
Confidence 3321 1 1245899999999852 23456
Q ss_pred HHHhhhcccccCCC-------CceEEEEecCC--------------------------cCcCCHhhhcCCCeeeEEEccC
Q 011573 340 GLLNFIDGLWSACG-------GERLIVFTTNY--------------------------IEKLDPALIRKGRMDKHIELSH 386 (482)
Q Consensus 340 ~LL~~ldg~~s~~~-------~~~iiI~TTN~--------------------------~~~LD~aL~RpGR~d~~I~~~~ 386 (482)
.|+..|+...-..+ .+.++|+|||. ...++|+|+. ||+..+.+++
T Consensus 138 ~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p 215 (311)
T 4fcw_A 138 ILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRP 215 (311)
T ss_dssp HHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCC
T ss_pred HHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCC
Confidence 67777764321111 25789999998 6689999998 9999999999
Q ss_pred CCHHHHHHHHHHhccc
Q 011573 387 CSYEAFKVLAKNYLNI 402 (482)
Q Consensus 387 p~~~~~~~l~~~~l~~ 402 (482)
|+.+++..|++.++..
T Consensus 216 ~~~~~~~~i~~~~l~~ 231 (311)
T 4fcw_A 216 LTKEQIRQIVEIQMSY 231 (311)
T ss_dssp CCHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998753
No 46
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.64 E-value=1.2e-15 Score=151.30 Aligned_cols=157 Identities=15% Similarity=0.206 Sum_probs=114.4
Q ss_pred eccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-----CCceeecc
Q 011573 192 VFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-----GYDLYDLE 266 (482)
Q Consensus 192 ~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-----~~~i~~l~ 266 (482)
....|.+|++++|.+..++.+...+. . |.. .+||||||||||||++++++|+.+ +.+++.++
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~----~-------~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 75 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVE----R-------KNI--PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTT----T-------TCC--CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHh----C-------CCC--CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe
Confidence 34578899999999988877654432 1 211 249999999999999999999997 34567777
Q ss_pred cccccChHHH----HHHHHhc----CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHH
Q 011573 267 LTAVKDNTEL----RKLLIET----SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTL 338 (482)
Q Consensus 267 l~~~~~~~~L----~~l~~~~----~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 338 (482)
++.......+ ....... ..+.||+|||+|.+. ....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~------------------------------------~~~~ 119 (319)
T 2chq_A 76 ASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT------------------------------------ADAQ 119 (319)
T ss_dssp TTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC------------------------------------HHHH
T ss_pred CccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC------------------------------------HHHH
Confidence 7654332222 2222111 357999999999862 1234
Q ss_pred HHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccC
Q 011573 339 SGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIES 404 (482)
Q Consensus 339 s~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~ 404 (482)
..|+..++.. +...++|++||.+..+++++.+ |+. .+.|+.|+.++...++..++....
T Consensus 120 ~~L~~~le~~----~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~ 178 (319)
T 2chq_A 120 AALRRTMEMY----SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEG 178 (319)
T ss_dssp HTTGGGTSSS----SSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhc----CCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcC
Confidence 5577777653 3457899999999999999999 886 899999999999999988875443
No 47
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.64 E-value=2.2e-15 Score=158.04 Aligned_cols=151 Identities=20% Similarity=0.287 Sum_probs=112.2
Q ss_pred ccCCCCccccccChHHH---HHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccc
Q 011573 193 FEHPATFQTLAMEPAEK---KEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTA 269 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k---~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~ 269 (482)
.-.|.+|++++|.+.++ +.+...+.. |. ..++|||||||||||+++++||+.++.+++.+++..
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEA-----------GH--LHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHH-----------TC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHc-----------CC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 34688999999998887 444433321 11 258999999999999999999999999999888765
Q ss_pred ccChHHHHHHHHhc------CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHh
Q 011573 270 VKDNTELRKLLIET------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLN 343 (482)
Q Consensus 270 ~~~~~~L~~l~~~~------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 343 (482)
. ....++.++..+ ..++||||||||.+.. .....||.
T Consensus 86 ~-~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~------------------------------------~~q~~LL~ 128 (447)
T 3pvs_A 86 S-GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK------------------------------------SQQDAFLP 128 (447)
T ss_dssp C-CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------------------------------CCHH
T ss_pred C-CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH------------------------------------HHHHHHHH
Confidence 4 345566666554 3689999999998621 12234777
Q ss_pred hhcccccCCCCceEEEEec--CCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 344 FIDGLWSACGGERLIVFTT--NYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 344 ~ldg~~s~~~~~~iiI~TT--N~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
.++. +.+++|++| |....++++|++ |+. .+.|+.|+.+++..+++.++..
T Consensus 129 ~le~------~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 129 HIED------GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp HHHT------TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHC
T ss_pred HHhc------CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHH
Confidence 7775 225555544 555689999999 997 7889999999999999998764
No 48
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=1.6e-15 Score=162.13 Aligned_cols=173 Identities=19% Similarity=0.308 Sum_probs=117.6
Q ss_pred CceeeeccCCCCccccccChHHHHHHHHHHHHHhhC-HHHHHHhCC---CcCccccccCCCCchHHHHHHHHHHHhCCce
Q 011573 187 NWVHVVFEHPATFQTLAMEPAEKKEIIDDLIAFSKS-EDFYARIGR---AWKRGYLLYGPPGTGKSTMIAAMANLLGYDL 262 (482)
Q Consensus 187 ~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~-~~~y~~~g~---~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i 262 (482)
.|. ....|.+|++++|.++.++.+.+.+..+... +..|...|. +.++++||+||||||||++|+++|+++++++
T Consensus 28 lW~--ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~ 105 (516)
T 1sxj_A 28 LWT--VKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI 105 (516)
T ss_dssp CHH--HHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred Ccc--cccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 464 3457889999999999998887777654322 122223333 3568999999999999999999999999999
Q ss_pred eecccccccChHHHHHHHH-------------hc-------CCCeEEEEeCCcccccccccccccccccccCCCCCCccc
Q 011573 263 YDLELTAVKDNTELRKLLI-------------ET-------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQ 322 (482)
Q Consensus 263 ~~l~l~~~~~~~~L~~l~~-------------~~-------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~ 322 (482)
+.++++.......+...+. .. ..++||||||+|.+.. .
T Consensus 106 i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~---~------------------- 163 (516)
T 1sxj_A 106 LEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG---G------------------- 163 (516)
T ss_dssp EEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT---T-------------------
T ss_pred EEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch---h-------------------
Confidence 9999988766544433332 11 4679999999999641 0
Q ss_pred ccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 323 KLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 323 ~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
....+..|++.++.. ...+|+|+++.....++ .+.| |+ ..|.|+.|+.+++..++...+..
T Consensus 164 -----------~~~~l~~L~~~l~~~----~~~iIli~~~~~~~~l~-~l~~--r~-~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 164 -----------DRGGVGQLAQFCRKT----STPLILICNERNLPKMR-PFDR--VC-LDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp -----------STTHHHHHHHHHHHC----SSCEEEEESCTTSSTTG-GGTT--TS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHhc----CCCEEEEEcCCCCccch-hhHh--ce-EEEEeCCCCHHHHHHHHHHHHHH
Confidence 011245566666542 12233333333334454 4554 44 59999999999999988877654
No 49
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=6.4e-15 Score=146.66 Aligned_cols=160 Identities=19% Similarity=0.246 Sum_probs=114.8
Q ss_pred CceeeeccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhC-----Cc
Q 011573 187 NWVHVVFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLG-----YD 261 (482)
Q Consensus 187 ~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~-----~~ 261 (482)
.|. ....|.+|++++|.++.++.+...+.. |.. .++|||||||||||++++++|+.+. .+
T Consensus 14 ~~~--~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~--~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~ 78 (327)
T 1iqp_A 14 PWV--EKYRPQRLDDIVGQEHIVKRLKHYVKT-----------GSM--PHLLFAGPPGVGKTTAALALARELFGENWRHN 78 (327)
T ss_dssp CHH--HHTCCCSTTTCCSCHHHHHHHHHHHHH-----------TCC--CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred chh--hccCCCCHHHhhCCHHHHHHHHHHHHc-----------CCC--CeEEEECcCCCCHHHHHHHHHHHhcCCcccCc
Confidence 454 345788999999999888877654432 211 2499999999999999999999874 23
Q ss_pred eeecccccccChHHHHHHHH----hc----CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccc
Q 011573 262 LYDLELTAVKDNTELRKLLI----ET----SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNN 333 (482)
Q Consensus 262 i~~l~l~~~~~~~~L~~l~~----~~----~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (482)
++.+++++......++..+. .. ..+.||+|||+|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~----------------------------------- 123 (327)
T 1iqp_A 79 FLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT----------------------------------- 123 (327)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----------------------------------
T ss_pred eEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----------------------------------
Confidence 56666554322222222221 11 357899999999852
Q ss_pred hHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccC
Q 011573 334 SQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIES 404 (482)
Q Consensus 334 ~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~ 404 (482)
......|+..++.. +....+|+|||.+..+++++.+ |+. .+.|++++.++...++..++....
T Consensus 124 -~~~~~~L~~~le~~----~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~ 186 (327)
T 1iqp_A 124 -QDAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEG 186 (327)
T ss_dssp -HHHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred -HHHHHHHHHHHHhc----CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcC
Confidence 12345577777653 2347888899999999999999 887 899999999999999988765433
No 50
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.61 E-value=1.9e-15 Score=143.44 Aligned_cols=161 Identities=14% Similarity=0.178 Sum_probs=105.6
Q ss_pred eccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhC---Cceeecccc
Q 011573 192 VFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLG---YDLYDLELT 268 (482)
Q Consensus 192 ~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~---~~i~~l~l~ 268 (482)
.+.++.+|+++++.+ ..+.++..+..+... +..+++||+||||||||++++++|+.+. .+++.+++.
T Consensus 20 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 20 HLPDDETFTSYYPAA-GNDELIGALKSAASG---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp CCCTTCSTTTSCC---CCHHHHHHHHHHHHT---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCCCCChhhccCCC-CCHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 344558899998832 123344555554432 2357899999999999999999999874 777777776
Q ss_pred cccChHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhccc
Q 011573 269 AVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGL 348 (482)
Q Consensus 269 ~~~~~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 348 (482)
.+.. .+...+.....+.+|+|||+|.+.. . ......|+..++..
T Consensus 90 ~~~~--~~~~~~~~~~~~~vliiDe~~~~~~---~-------------------------------~~~~~~l~~~l~~~ 133 (242)
T 3bos_A 90 IHAS--ISTALLEGLEQFDLICIDDVDAVAG---H-------------------------------PLWEEAIFDLYNRV 133 (242)
T ss_dssp GGGG--SCGGGGTTGGGSSEEEEETGGGGTT---C-------------------------------HHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHhccCCCEEEEeccccccC---C-------------------------------HHHHHHHHHHHHHH
Confidence 6532 1222333446789999999998531 0 11123355555544
Q ss_pred ccCCCCceEEEEecC-CcC---cCCHhhhcCCCee--eEEEccCCCHHHHHHHHHHhccc
Q 011573 349 WSACGGERLIVFTTN-YIE---KLDPALIRKGRMD--KHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 349 ~s~~~~~~iiI~TTN-~~~---~LD~aL~RpGR~d--~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
... ....+|+||| .+. .+++++.+ |+. ..++++.|+.+++..++..++..
T Consensus 134 ~~~--~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~ 189 (242)
T 3bos_A 134 AEQ--KRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAM 189 (242)
T ss_dssp HHH--CSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHH
T ss_pred HHc--CCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHH
Confidence 322 1122445444 443 46799999 886 89999999999999999988753
No 51
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=9.8e-15 Score=145.08 Aligned_cols=154 Identities=14% Similarity=0.191 Sum_probs=114.9
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-----CCceeeccc
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-----GYDLYDLEL 267 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-----~~~i~~l~l 267 (482)
...|.+|++++|.+..++.+...+. . |.. +. +|||||||||||++++++|+.+ +.+++.+++
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~----~-------~~~-~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAK----D-------GNM-PH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHH----S-------CCC-CC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHH----c-------CCC-Ce-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 4578899999999988887755442 1 222 23 9999999999999999999986 345667776
Q ss_pred ccccChHHHHHHHHhc--------C-CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHH
Q 011573 268 TAVKDNTELRKLLIET--------S-SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTL 338 (482)
Q Consensus 268 ~~~~~~~~L~~l~~~~--------~-~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 338 (482)
+...+...++.++... . .+.||+|||+|.+. ....
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~------------------------------------~~~~ 124 (323)
T 1sxj_B 81 SDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT------------------------------------AGAQ 124 (323)
T ss_dssp TSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC------------------------------------HHHH
T ss_pred ccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCC------------------------------------HHHH
Confidence 6554455565555431 2 37899999999862 1124
Q ss_pred HHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 339 SGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 339 s~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
..|+..++.. ....++|++||.+..+++++.+ |+. .+.|+.|+.++...++..++..
T Consensus 125 ~~L~~~le~~----~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~ 181 (323)
T 1sxj_B 125 QALRRTMELY----SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKL 181 (323)
T ss_dssp HTTHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc----CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHH
Confidence 4566666653 2447888899999999999999 886 8999999999999999887653
No 52
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.60 E-value=2.6e-14 Score=145.18 Aligned_cols=181 Identities=18% Similarity=0.228 Sum_probs=124.6
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc-----------
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD----------- 261 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~----------- 261 (482)
...|.+|++++|.++.++.+...+.. | ..+..|||+||||||||++++++|+.++..
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 76 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSS
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 34678899999999888877665531 1 224579999999999999999999998642
Q ss_pred -------------eeecccccccChHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCccc
Q 011573 262 -------------LYDLELTAVKDNTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQ 322 (482)
Q Consensus 262 -------------i~~l~l~~~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~ 322 (482)
++.++.........++.++.... .+.||+|||+|.+-
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~------------------------ 132 (373)
T 1jr3_A 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------------------ 132 (373)
T ss_dssp HHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC------------------------
T ss_pred HHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc------------------------
Confidence 22232222112234556655432 46899999999852
Q ss_pred ccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 323 KLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 323 ~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
......|+..++.. +...++|++||.+..+++++.+ |+ ..++|+.|+.++...+++.++..
T Consensus 133 ------------~~~~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~ 193 (373)
T 1jr3_A 133 ------------RHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNE 193 (373)
T ss_dssp ------------HHHHHHHHHHHHSC----CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHhcC----CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHH
Confidence 12456677777753 3458899999999999999998 87 58999999999999999988754
Q ss_pred cCCCcH-HHHHHHhcCCCCCHHHHHHH
Q 011573 403 ESHNLF-DKIGELLGEAKMTPADVAEH 428 (482)
Q Consensus 403 ~~~~~~-~~i~~l~~~~~~s~adi~~~ 428 (482)
...... +.+..++..++=++.++.+.
T Consensus 194 ~~~~~~~~a~~~l~~~~~G~~r~~~~~ 220 (373)
T 1jr3_A 194 EHIAHEPRALQLLARAAEGSLRDALSL 220 (373)
T ss_dssp HTCCBCHHHHHHHHHHSSSCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHCCCCHHHHHHH
Confidence 332222 22333444334455555443
No 53
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=5.9e-15 Score=148.82 Aligned_cols=154 Identities=18% Similarity=0.244 Sum_probs=112.1
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhC------Cceeecc
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLG------YDLYDLE 266 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~------~~i~~l~ 266 (482)
...|.+|++++|.+++++.+...+ .. |. ..++|||||||||||++++++|+.++ ..+..++
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~l----~~-------~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKTL----KS-------AN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHT----TC-------TT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred hcCCCCHHHhhCCHHHHHHHHHHH----hc-------CC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 357889999999998887665433 22 11 13499999999999999999999864 3567777
Q ss_pred cccccChHHHHHHHH---h---------------cCCCeEEEEeCCcccccccccccccccccccCCCCCCccccccccc
Q 011573 267 LTAVKDNTELRKLLI---E---------------TSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEE 328 (482)
Q Consensus 267 l~~~~~~~~L~~l~~---~---------------~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 328 (482)
++.......++..+. . .+.+.||+|||+|.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~------------------------------ 146 (353)
T 1sxj_D 97 ASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT------------------------------ 146 (353)
T ss_dssp SSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC------------------------------
T ss_pred cccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC------------------------------
Confidence 766544444433221 1 1245799999999862
Q ss_pred ccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 329 RETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 329 ~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
....+.|+..|+... ....+|++||++..++|++++ |+. .+.|+.|+.++...++...+..
T Consensus 147 ------~~~~~~Ll~~le~~~----~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~ 207 (353)
T 1sxj_D 147 ------ADAQSALRRTMETYS----GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQ 207 (353)
T ss_dssp ------HHHHHHHHHHHHHTT----TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHHhcC----CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHH
Confidence 123456777777642 235677889999999999999 887 8999999999999988887643
No 54
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.59 E-value=2.2e-14 Score=146.91 Aligned_cols=175 Identities=21% Similarity=0.247 Sum_probs=114.9
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHH-----------------HhCCCcCccccccCCCCchHHHHHHHHHHHhCCcee
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYA-----------------RIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLY 263 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~-----------------~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~ 263 (482)
.|+|.+++|+.|...+...+....... ......+.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 478999999999877754433222100 112234678999999999999999999999999999
Q ss_pred ecccccccC--------hHHHHHHHHhcC------CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccc
Q 011573 264 DLELTAVKD--------NTELRKLLIETS------SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEER 329 (482)
Q Consensus 264 ~l~l~~~~~--------~~~L~~l~~~~~------~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (482)
.+++..+.. ...+..++.... .++||||||||.+.. .+... ...
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~---~~~~~-------------------~~~ 159 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISR---LSENR-------------------SIT 159 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------------------------
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhh---hcCCC-------------------cee
Confidence 999887631 233555554432 679999999999742 11100 000
Q ss_pred cccchHHHHHHHHhhhccccc---C--------------CCCceEEEEecCC----------------------------
Q 011573 330 ETNNSQVTLSGLLNFIDGLWS---A--------------CGGERLIVFTTNY---------------------------- 364 (482)
Q Consensus 330 ~~~~~~~~ls~LL~~ldg~~s---~--------------~~~~~iiI~TTN~---------------------------- 364 (482)
.+......++.||..||+..- . ...++++|+|||.
T Consensus 160 ~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~ 239 (376)
T 1um8_A 160 RDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQ 239 (376)
T ss_dssp ----CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTT
T ss_pred cccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccch
Confidence 111123467888888886410 0 0133577888772
Q ss_pred -------------cCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHh
Q 011573 365 -------------IEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNY 399 (482)
Q Consensus 365 -------------~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~ 399 (482)
...+.|+|+. ||+..|.|+.++.++...|+...
T Consensus 240 ~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~ 285 (376)
T 1um8_A 240 EAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQKP 285 (376)
T ss_dssp TTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSS
T ss_pred hHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhhh
Confidence 1135678888 99999999999999999988753
No 55
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.59 E-value=7.6e-15 Score=147.12 Aligned_cols=164 Identities=14% Similarity=0.238 Sum_probs=107.9
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeeccccc
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTA 269 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~ 269 (482)
+.+..+|++++..+..... ...+..+...+ + ....+++||||||||||++++++|+++ +.+++.+++..
T Consensus 4 l~~~~~f~~fv~g~~~~~a-~~~~~~~~~~~------~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGNRLA-YEVVKEALENL------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp CCTTCCSSSCCCCTTTHHH-HHHHHHHHHTT------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCCCcccCCCCCcHHHH-HHHHHHHHhCc------C-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 3455789998732222222 22343443331 1 234789999999999999999999999 89999988776
Q ss_pred ccCh--HH-----HHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHH
Q 011573 270 VKDN--TE-----LRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLL 342 (482)
Q Consensus 270 ~~~~--~~-----L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 342 (482)
+... .. +..+......+.+|||||||.+. +. ..+...|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~---~~-------------------------------~~~~~~l~ 121 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLS---GK-------------------------------ERTQIEFF 121 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGT---TC-------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCccccc---CC-------------------------------hHHHHHHH
Confidence 5210 00 11112223458999999999863 11 11233455
Q ss_pred hhhcccccCCCCceEEEEecCCcC---cCCHhhhcCCCee--eEEEccCCCHHHHHHHHHHhcccc
Q 011573 343 NFIDGLWSACGGERLIVFTTNYIE---KLDPALIRKGRMD--KHIELSHCSYEAFKVLAKNYLNIE 403 (482)
Q Consensus 343 ~~ldg~~s~~~~~~iiI~TTN~~~---~LD~aL~RpGR~d--~~I~~~~p~~~~~~~l~~~~l~~~ 403 (482)
..++..... +.++|+.++|.+. .++++|++ ||+ ..+++++ +.+++..+++.++...
T Consensus 122 ~~l~~~~~~--~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~ 182 (324)
T 1l8q_A 122 HIFNTLYLL--EKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEF 182 (324)
T ss_dssp HHHHHHHHT--TCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHC--CCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhc
Confidence 555544322 2367777777766 68999999 886 7899999 9999999999987543
No 56
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.58 E-value=1.4e-14 Score=147.27 Aligned_cols=160 Identities=18% Similarity=0.180 Sum_probs=113.0
Q ss_pred CccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---------CCceeecccc
Q 011573 198 TFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---------GYDLYDLELT 268 (482)
Q Consensus 198 ~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---------~~~i~~l~l~ 268 (482)
..+.++|.++..+.+...+...+.. ..+++++|+||||||||++++++++.+ +.+++.+++.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRG---------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSS---------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 3478899888888776655433221 335789999999999999999999998 7888888876
Q ss_pred cccCh----------------------HH-HHHHHHh---cCCCeEEEEeCCcccccccccccccccccccCCCCCCccc
Q 011573 269 AVKDN----------------------TE-LRKLLIE---TSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQ 322 (482)
Q Consensus 269 ~~~~~----------------------~~-L~~l~~~---~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~ 322 (482)
...+. .. +..++.. ...++||+|||+|.+.. .
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~---~------------------- 145 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPK---R------------------- 145 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHH---S-------------------
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcc---c-------------------
Confidence 54321 12 2222222 23578999999999641 0
Q ss_pred ccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCc---CcCCHhhhcCCCeee-EEEccCCCHHHHHHHHHH
Q 011573 323 KLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYI---EKLDPALIRKGRMDK-HIELSHCSYEAFKVLAKN 398 (482)
Q Consensus 323 ~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~---~~LD~aL~RpGR~d~-~I~~~~p~~~~~~~l~~~ 398 (482)
......+..+++.++.... +...++|+|||.+ +.+++++.+ ||.. .|.|++++.++...+++.
T Consensus 146 ---------~~~~~~l~~l~~~~~~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~ 212 (387)
T 2v1u_A 146 ---------PGGQDLLYRITRINQELGD--RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILET 212 (387)
T ss_dssp ---------TTHHHHHHHHHHGGGCC-------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHH
T ss_pred ---------CCCChHHHhHhhchhhcCC--CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHH
Confidence 0123455666666554310 2457899999988 789999999 8875 899999999999999998
Q ss_pred hcc
Q 011573 399 YLN 401 (482)
Q Consensus 399 ~l~ 401 (482)
.+.
T Consensus 213 ~~~ 215 (387)
T 2v1u_A 213 RAE 215 (387)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 57
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.58 E-value=2.3e-15 Score=136.97 Aligned_cols=145 Identities=22% Similarity=0.305 Sum_probs=98.4
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----------CCceee
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----------GYDLYD 264 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----------~~~i~~ 264 (482)
.|.+|++++|.++..+.+.+.+. . ..++++||+||||||||++++++|+.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~----~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 17 RAGKLDPVIGRDTEIRRAIQILS----R---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT----S---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred hccccchhhcchHHHHHHHHHHh----C---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 46789999999887776655442 1 235789999999999999999999997 778887
Q ss_pred ccccccc----C----hHHHHHHHHhc---CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccc
Q 011573 265 LELTAVK----D----NTELRKLLIET---SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNN 333 (482)
Q Consensus 265 l~l~~~~----~----~~~L~~l~~~~---~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (482)
+++..+. . ...+..++... ..+.+|+|||+|.+.. .+.. ...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~---~~~~------------------------~~~ 136 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVG---AGAV------------------------AEG 136 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSS---SSSS------------------------CTT
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcc---cccc------------------------ccc
Confidence 7766542 1 12344444433 4679999999999742 1100 000
Q ss_pred hHHHHHHHHhhhcccccCCCCceEEEEecCCcC-----cCCHhhhcCCCeeeEEEccCCC
Q 011573 334 SQVTLSGLLNFIDGLWSACGGERLIVFTTNYIE-----KLDPALIRKGRMDKHIELSHCS 388 (482)
Q Consensus 334 ~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~-----~LD~aL~RpGR~d~~I~~~~p~ 388 (482)
.......|+..++. ..+++|+|||.++ .+|++|++ ||+ .|+++.|+
T Consensus 137 ~~~~~~~l~~~~~~------~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 137 ALDAGNILKPMLAR------GELRCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp SCCTHHHHHHHHHT------TCSCEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred chHHHHHHHHHHhc------CCeeEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 01122223333332 3467899998876 68999999 999 59999885
No 58
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.57 E-value=2.4e-14 Score=144.32 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=100.9
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCcee----eccccc
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLY----DLELTA 269 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~----~l~l~~ 269 (482)
.+|.+|++++|.+.+++.+...+. . +...++|||||||||||++|+++|+.++...+ .++|..
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~----~---------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAV----D---------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHH----C---------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHHhh----C---------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 456889999999887765422111 1 12357999999999999999999999863100 011111
Q ss_pred c---------------------------cChHHH------HHHHHhc-----------CCCeEEEEeCCccccccccccc
Q 011573 270 V---------------------------KDNTEL------RKLLIET-----------SSKSIIVIEDIDCSLDLTGQRR 305 (482)
Q Consensus 270 ~---------------------------~~~~~L------~~l~~~~-----------~~~sIl~iDdiD~~~~~~~~r~ 305 (482)
. .+...+ ...+... ..++||||||||.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~------- 157 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLE------- 157 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC-------
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCC-------
Confidence 0 011121 2222221 147899999999852
Q ss_pred ccccccccCCCCCCcccccccccccccchHHHHHHHHhhhccc---ccCCC------CceEEEEecCCcC-cCCHhhhcC
Q 011573 306 KKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGL---WSACG------GERLIVFTTNYIE-KLDPALIRK 375 (482)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~---~s~~~------~~~iiI~TTN~~~-~LD~aL~Rp 375 (482)
...+..|+..++.- ....+ ...++|+|||..+ .++++|++
T Consensus 158 -----------------------------~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~- 207 (350)
T 1g8p_A 158 -----------------------------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD- 207 (350)
T ss_dssp -----------------------------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT-
T ss_pred -----------------------------HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh-
Confidence 12344566666531 11111 2478899999855 89999999
Q ss_pred CCeeeEEEccCC-CHHHHHHHHHHhc
Q 011573 376 GRMDKHIELSHC-SYEAFKVLAKNYL 400 (482)
Q Consensus 376 GR~d~~I~~~~p-~~~~~~~l~~~~l 400 (482)
||+.++++++| +.+.+..|++..+
T Consensus 208 -R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 208 -RFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp -TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred -hcceEEEcCCCCcHHHHHHHHHHHH
Confidence 99999999999 6777778887743
No 59
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.55 E-value=4.3e-14 Score=144.15 Aligned_cols=151 Identities=17% Similarity=0.247 Sum_probs=111.5
Q ss_pred cccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-----------CCceeecccc
Q 011573 200 QTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-----------GYDLYDLELT 268 (482)
Q Consensus 200 ~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-----------~~~i~~l~l~ 268 (482)
++++|.++..+.+...+..+... ..+++++|+||||||||++++++++.+ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 77899999998888777665543 234689999999999999999999998 8889988876
Q ss_pred ccc-Ch-----------------------HH-HHHHHHhcC-CCeEEEEeCCcccccccccccccccccccCCCCCCccc
Q 011573 269 AVK-DN-----------------------TE-LRKLLIETS-SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQ 322 (482)
Q Consensus 269 ~~~-~~-----------------------~~-L~~l~~~~~-~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~ 322 (482)
... +. .. +..++.... .+.||+|||+|.+.. .
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~---~------------------- 148 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVK---R------------------- 148 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHH---S-------------------
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhcc---C-------------------
Confidence 543 21 11 222222222 334999999999631 0
Q ss_pred ccccccccccchHHH-HHHHHhhhcccccCCCCceEEEEecCCc---CcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHH
Q 011573 323 KLGKEERETNNSQVT-LSGLLNFIDGLWSACGGERLIVFTTNYI---EKLDPALIRKGRMDKHIELSHCSYEAFKVLAKN 398 (482)
Q Consensus 323 ~~~~~~~~~~~~~~~-ls~LL~~ldg~~s~~~~~~iiI~TTN~~---~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~ 398 (482)
..... +..|+... .+..+|+|||.+ +.+++++.+ ||...|+|++++.++...+++.
T Consensus 149 ----------~~~~~~l~~l~~~~--------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~ 208 (384)
T 2qby_B 149 ----------RGGDIVLYQLLRSD--------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSK 208 (384)
T ss_dssp ----------TTSHHHHHHHHTSS--------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHH
T ss_pred ----------CCCceeHHHHhcCC--------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHH
Confidence 00123 44455443 347899999987 789999999 8877999999999999999998
Q ss_pred hcc
Q 011573 399 YLN 401 (482)
Q Consensus 399 ~l~ 401 (482)
++.
T Consensus 209 ~~~ 211 (384)
T 2qby_B 209 YAE 211 (384)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 60
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.55 E-value=2.3e-13 Score=137.33 Aligned_cols=192 Identities=18% Similarity=0.161 Sum_probs=126.5
Q ss_pred eccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc
Q 011573 192 VFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK 271 (482)
Q Consensus 192 ~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~ 271 (482)
..-.|.+|+.+++.+.+++.+...+..- ...|. .+..++|+||||||||+|++++|+.++.++...+.....
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~-------~~~~~-~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~ 88 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKLSLALEAA-------KMRGE-VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHHHHHHHHH-------HHHTC-CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC
T ss_pred HHcCCccHHHccCcHHHHHHHHHHHHHH-------HhcCC-CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc
Confidence 3456789999999877666654333221 11222 236799999999999999999999999887665544444
Q ss_pred ChHHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccc--
Q 011573 272 DNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLW-- 349 (482)
Q Consensus 272 ~~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-- 349 (482)
....+..++.....+.|++|||++.+.. .....|+..+....
T Consensus 89 ~~~~l~~~~~~~~~~~v~~iDE~~~l~~------------------------------------~~~e~L~~~~~~~~~~ 132 (334)
T 1in4_A 89 KQGDMAAILTSLERGDVLFIDEIHRLNK------------------------------------AVEELLYSAIEDFQID 132 (334)
T ss_dssp SHHHHHHHHHHCCTTCEEEEETGGGCCH------------------------------------HHHHHHHHHHHTSCCC
T ss_pred CHHHHHHHHHHccCCCEEEEcchhhcCH------------------------------------HHHHHHHHHHHhcccc
Confidence 5566777766666788999999998631 01111222221110
Q ss_pred ----cC--------CCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCc-HHHHHHHhc
Q 011573 350 ----SA--------CGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNL-FDKIGELLG 416 (482)
Q Consensus 350 ----s~--------~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~-~~~i~~l~~ 416 (482)
.. .-....++.+||++..|++++++ ||...+.+++++.+++..+++.......... .+.+..++.
T Consensus 133 i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~ 210 (334)
T 1in4_A 133 IMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAK 210 (334)
T ss_dssp C---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHH
T ss_pred eeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Confidence 00 00124677899999999999999 9998999999999999999988764332222 223444444
Q ss_pred CCCCCHHHHHHHh
Q 011573 417 EAKMTPADVAEHL 429 (482)
Q Consensus 417 ~~~~s~adi~~~l 429 (482)
...=+|+.+..+|
T Consensus 211 ~~~G~~R~a~~ll 223 (334)
T 1in4_A 211 RSRGTPRIAIRLT 223 (334)
T ss_dssp TSTTCHHHHHHHH
T ss_pred hcCCChHHHHHHH
Confidence 4444565554443
No 61
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.55 E-value=7.6e-14 Score=147.25 Aligned_cols=147 Identities=20% Similarity=0.246 Sum_probs=106.6
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----------CCcee
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----------GYDLY 263 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----------~~~i~ 263 (482)
..|..|+.|+|.++..+.+++.+.. ..+.++||+||||||||++++++|..+ +.+++
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 3567899999999888887655532 235689999999999999999999997 78899
Q ss_pred ecccccc---cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHH
Q 011573 264 DLELTAV---KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTL 338 (482)
Q Consensus 264 ~l~l~~~---~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 338 (482)
.++++.. .....++.+|.... .++||||| . .. ...
T Consensus 241 ~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD---~------~~-------------------------------~a~ 280 (468)
T 3pxg_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID---A------AI-------------------------------DAS 280 (468)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC---C------------------------------------------
T ss_pred EeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe---C------ch-------------------------------hHH
Confidence 8888722 12245677776553 68899999 1 00 011
Q ss_pred HHHHhhhcccccCCCCceEEEEecCCcC-----cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 339 SGLLNFIDGLWSACGGERLIVFTTNYIE-----KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 339 s~LL~~ldg~~s~~~~~~iiI~TTN~~~-----~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
+.|+..|+. +.+.+|++||..+ .+|++|.| ||. .|.|++|+.+++..|++.++..
T Consensus 281 ~~L~~~L~~------g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 281 NILKPSLAR------GELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp ---CCCTTS------SSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred HHHHHhhcC------CCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHH
Confidence 234444442 3578999999987 69999999 998 5999999999999999988764
No 62
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.55 E-value=5e-14 Score=157.13 Aligned_cols=154 Identities=18% Similarity=0.328 Sum_probs=113.4
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHhCCC----cCccccccCCCCchHHHHHHHHHHHhCCceeecccccccCh---
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRA----WKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDN--- 273 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~----~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~--- 273 (482)
.++|.++.++.|...+... +.|.. +..++||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 4667777777766555332 23332 22369999999999999999999999999999998876321
Q ss_pred ----------------HHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHH
Q 011573 274 ----------------TELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVT 337 (482)
Q Consensus 274 ----------------~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (482)
..+...+.. ..++||||||||.+- ...
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~~------------------------------------~~~ 573 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKAH------------------------------------PDV 573 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHH-CSSEEEEEETGGGSC------------------------------------HHH
T ss_pred hhhcCCCCCCcCccccchHHHHHHh-CCCcEEEEeCccccC------------------------------------HHH
Confidence 123344433 347999999999851 236
Q ss_pred HHHHHhhhcccc-c-CCC-----CceEEEEecCCcC-------------------------cCCHhhhcCCCeeeEEEcc
Q 011573 338 LSGLLNFIDGLW-S-ACG-----GERLIVFTTNYIE-------------------------KLDPALIRKGRMDKHIELS 385 (482)
Q Consensus 338 ls~LL~~ldg~~-s-~~~-----~~~iiI~TTN~~~-------------------------~LD~aL~RpGR~d~~I~~~ 385 (482)
++.||..||.-. . ..| .+.+||+|||... .++|+|+. |||..|.|+
T Consensus 574 ~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~ 651 (758)
T 1r6b_X 574 FNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFD 651 (758)
T ss_dssp HHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECC
T ss_pred HHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeC
Confidence 777888887421 1 111 3478999999753 68999999 999999999
Q ss_pred CCCHHHHHHHHHHhcc
Q 011573 386 HCSYEAFKVLAKNYLN 401 (482)
Q Consensus 386 ~p~~~~~~~l~~~~l~ 401 (482)
+|+.+++..|++.++.
T Consensus 652 ~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 652 HLSTDVIHQVVDKFIV 667 (758)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999999875
No 63
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.6e-13 Score=137.20 Aligned_cols=184 Identities=11% Similarity=0.160 Sum_probs=120.3
Q ss_pred cCccccccCCCCchHHHHHHHHHHHh----------CCceeecccccccC----------------------hHHHHHHH
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLL----------GYDLYDLELTAVKD----------------------NTELRKLL 280 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l----------~~~i~~l~l~~~~~----------------------~~~L~~l~ 280 (482)
.+.+++||||||||||++++++++++ ++.++.++|..+.+ ...|..+|
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f 123 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYI 123 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 46789999999999999999999998 35667777765422 33466677
Q ss_pred Hhc----CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCce
Q 011573 281 IET----SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGER 356 (482)
Q Consensus 281 ~~~----~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~ 356 (482)
... ..++||+|||||.+. .+..+..|++... ......
T Consensus 124 ~~~~~~~~~~~ii~lDE~d~l~-----------------------------------~q~~L~~l~~~~~----~~~s~~ 164 (318)
T 3te6_A 124 TNVPKAKKRKTLILIQNPENLL-----------------------------------SEKILQYFEKWIS----SKNSKL 164 (318)
T ss_dssp HHSCGGGSCEEEEEEECCSSSC-----------------------------------CTHHHHHHHHHHH----CSSCCE
T ss_pred HHhhhccCCceEEEEecHHHhh-----------------------------------cchHHHHHHhccc----ccCCcE
Confidence 653 357899999999963 1124444554332 123457
Q ss_pred EEEEecCCcCc----CCHhhhcCCCee-eEEEccCCCHHHHHHHHHHhccccCCCcH----------------H-HHHH-
Q 011573 357 LIVFTTNYIEK----LDPALIRKGRMD-KHIELSHCSYEAFKVLAKNYLNIESHNLF----------------D-KIGE- 413 (482)
Q Consensus 357 iiI~TTN~~~~----LD~aL~RpGR~d-~~I~~~~p~~~~~~~l~~~~l~~~~~~~~----------------~-~i~~- 413 (482)
+||+++|..+. |++++.. ||. ..|.|++++.++...|+++.+.......+ + .-..
T Consensus 165 ~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 242 (318)
T 3te6_A 165 SIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKI 242 (318)
T ss_dssp EEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------
T ss_pred EEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence 89999999865 4555566 786 58999999999999999998864321100 0 0000
Q ss_pred ---Hhc-CCCCCHHHHHHHhccc--CCCCCHHHHHHHHHHHHHHHHHHHhh
Q 011573 414 ---LLG-EAKMTPADVAEHLMPK--TFPADVEFSLRSLNQALELAKEEARR 458 (482)
Q Consensus 414 ---l~~-~~~~s~adi~~~l~~~--~~~~~~~~~~~~l~~al~~~~~~~~~ 458 (482)
+.. ..-+++.-|. +|..+ ....|+..|++-+-.|.+....+..+
T Consensus 243 ~~~~~~~~~~i~~~ai~-~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e~~~ 292 (318)
T 3te6_A 243 PDNVIVINHKINNKITQ-LIAKNVANVSGSTEKAFKICEAAVEISKKDFVR 292 (318)
T ss_dssp CTTEEEECEECCHHHHH-HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCHHHHH-HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHh
Confidence 000 0124666554 44431 24678899998887777766655443
No 64
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.54 E-value=4.6e-14 Score=159.37 Aligned_cols=157 Identities=18% Similarity=0.302 Sum_probs=105.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----------CCceee
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----------GYDLYD 264 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----------~~~i~~ 264 (482)
.|.+|+.++|.++..+.+++.+. . ..++++||+||||||||++++++|+.+ +.+++.
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~----~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILL----R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHH----C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHh----c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 46789999999887777765442 1 235689999999999999999999998 889999
Q ss_pred cccccccC--------hHHHHHHHHhc---CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccc
Q 011573 265 LELTAVKD--------NTELRKLLIET---SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNN 333 (482)
Q Consensus 265 l~l~~~~~--------~~~L~~l~~~~---~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (482)
++++.+.. ...++.++..+ ..++||||||||.+.+ .+.. ..
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~---~~~~-------------------------~g 283 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVG---AGKA-------------------------EG 283 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC---------------------------------------
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhc---cCCc-------------------------cc
Confidence 98887632 23467777665 3679999999999752 2110 00
Q ss_pred hHHHHHHHHhhhcccccCCCCceEEEEecCCcC----cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 334 SQVTLSGLLNFIDGLWSACGGERLIVFTTNYIE----KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 334 ~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~----~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
.....+.|...++. +++.+|++||.++ .+|++|.| ||+. |.++.|+.+++..|++.++.
T Consensus 284 ~~~~~~~L~~~l~~------~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 284 AVDAGNMLKPALAR------GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp --------HHHHHT------TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC------CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 01112223333332 3467888888775 48999999 9995 99999999999999987664
No 65
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.53 E-value=5e-14 Score=147.54 Aligned_cols=160 Identities=17% Similarity=0.301 Sum_probs=106.4
Q ss_pred ccCCCCccccc-cChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh-----CCceeecc
Q 011573 193 FEHPATFQTLA-MEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL-----GYDLYDLE 266 (482)
Q Consensus 193 ~~~p~~~~~l~-~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-----~~~i~~l~ 266 (482)
+.+..+|++++ |..... ....+..+...+ |. ..+++||||||||||+|++++|+++ +.+++.++
T Consensus 98 l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~~------~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSF--AYHAALEVAKHP------GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CCTTCSGGGCCCCTTTHH--HHHHHHHHHHST------TS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCCChhhcCCCCchHH--HHHHHHHHHhCC------CC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 44446899987 433322 223344443331 21 5789999999999999999999998 78888887
Q ss_pred cccccChHHHH---------HHHHhcC-CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHH
Q 011573 267 LTAVKDNTELR---------KLLIETS-SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQV 336 (482)
Q Consensus 267 l~~~~~~~~L~---------~l~~~~~-~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (482)
+..+. ..+. .+..... .+.||||||||.+.+ . ..
T Consensus 168 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~---~-------------------------------~~ 211 (440)
T 2z4s_A 168 SEKFL--NDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG---K-------------------------------TG 211 (440)
T ss_dssp HHHHH--HHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS---C-------------------------------HH
T ss_pred HHHHH--HHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC---C-------------------------------hH
Confidence 76652 1111 1222234 789999999998631 1 11
Q ss_pred HHHHHHhhhcccccCCCCceEEEEecCCcCc---CCHhhhcCCCee--eEEEccCCCHHHHHHHHHHhccc
Q 011573 337 TLSGLLNFIDGLWSACGGERLIVFTTNYIEK---LDPALIRKGRMD--KHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 337 ~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~---LD~aL~RpGR~d--~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
+...|+..++.+... +..|||.|.+.+.. ++++|++ ||+ ..+.++.|+.+++..+++..+..
T Consensus 212 ~q~~l~~~l~~l~~~--~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 212 VQTELFHTFNELHDS--GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp HHHHHHHHHHHHHTT--TCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 233455555544322 23555555555554 8999999 886 78999999999999999988753
No 66
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.53 E-value=4.5e-14 Score=137.34 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=101.6
Q ss_pred CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhC---CceeecccccccCh
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLG---YDLYDLELTAVKDN 273 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~---~~i~~l~l~~~~~~ 273 (482)
.+|++++|.+...+.+++.+...... +.++||+||||||||++|+++++.+. .+++.++|+.+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~-----------~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~- 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPL-----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE- 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTS-----------CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-
T ss_pred cccccceeCCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-
Confidence 47899999999988888877765432 47899999999999999999999885 6899999988742
Q ss_pred HHHH-HHHH-----------------hcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchH
Q 011573 274 TELR-KLLI-----------------ETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQ 335 (482)
Q Consensus 274 ~~L~-~l~~-----------------~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (482)
..+. .+|. ....+++|||||||.+. .
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~------------------------------------~ 114 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAP------------------------------------M 114 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSC------------------------------------H
T ss_pred hHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcC------------------------------------H
Confidence 2222 2221 11246899999999862 1
Q ss_pred HHHHHHHhhhcccc-cC------CCCceEEEEecCCc-------CcCCHhhhcCCCee-eEEEccCCCH--HHHHHHHHH
Q 011573 336 VTLSGLLNFIDGLW-SA------CGGERLIVFTTNYI-------EKLDPALIRKGRMD-KHIELSHCSY--EAFKVLAKN 398 (482)
Q Consensus 336 ~~ls~LL~~ldg~~-s~------~~~~~iiI~TTN~~-------~~LD~aL~RpGR~d-~~I~~~~p~~--~~~~~l~~~ 398 (482)
.....|+..++.-. .. ......+|+|||.. ..++++|.. ||+ ..|.+|..+. ++...+++.
T Consensus 115 ~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~ 192 (265)
T 2bjv_A 115 MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEY 192 (265)
T ss_dssp HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHH
Confidence 23345666665321 00 01235788899874 357899999 996 4566666643 566777777
Q ss_pred hcc
Q 011573 399 YLN 401 (482)
Q Consensus 399 ~l~ 401 (482)
++.
T Consensus 193 ~l~ 195 (265)
T 2bjv_A 193 FAI 195 (265)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.53 E-value=7.7e-14 Score=155.66 Aligned_cols=155 Identities=13% Similarity=0.232 Sum_probs=112.9
Q ss_pred cccccChHHHHHHHHHHHHHhhCHHHHHHhCCC----cCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccC
Q 011573 200 QTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRA----WKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKD 272 (482)
Q Consensus 200 ~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~----~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~ 272 (482)
+.++|.+..++.+...+..... |.. +..++||+||||||||++|+++|..+ +.+++.++|+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~--------~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARA--------GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTT--------TCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHHHc--------ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 4578888888888777765432 221 11259999999999999999999998 78899999988743
Q ss_pred h-----HHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcc
Q 011573 273 N-----TELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDG 347 (482)
Q Consensus 273 ~-----~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg 347 (482)
. ..+...+.. ...+||||||||.+ ....++.||..||.
T Consensus 563 ~~~~~~~~l~~~~~~-~~~~vl~lDEi~~~------------------------------------~~~~~~~Ll~~le~ 605 (758)
T 3pxi_A 563 KHSTSGGQLTEKVRR-KPYSVVLLDAIEKA------------------------------------HPDVFNILLQVLED 605 (758)
T ss_dssp SCCCC---CHHHHHH-CSSSEEEEECGGGS------------------------------------CHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHHh-CCCeEEEEeCcccc------------------------------------CHHHHHHHHHHhcc
Confidence 1 233333333 35689999999985 22456778888875
Q ss_pred cccC-------CCCceEEEEecCCcCc------------CCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 348 LWSA-------CGGERLIVFTTNYIEK------------LDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 348 ~~s~-------~~~~~iiI~TTN~~~~------------LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
-.-. ...+.+||+|||.+.. ++|+|+. |||..|.|++|+.+++..|++.++.
T Consensus 606 g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 606 GRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp SBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHH
T ss_pred CeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHH
Confidence 2110 1134689999997543 7899998 9999999999999999999999875
No 68
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=1.2e-13 Score=139.62 Aligned_cols=183 Identities=14% Similarity=0.117 Sum_probs=119.4
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC------------
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY------------ 260 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~------------ 260 (482)
...|.+|++++|.+++++.+...+. . .|.. +. +||+||||||||++++++|+.+..
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~---~-------~~~~-~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSD---Q-------PRDL-PH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTT---C-------TTCC-CC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHh---h-------CCCC-Ce-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 4578999999999887766543320 1 1222 33 999999999999999999996521
Q ss_pred -----------------ceeeccccccc--ChHHHHHHHHhc----------------CCCeEEEEeCCccccccccccc
Q 011573 261 -----------------DLYDLELTAVK--DNTELRKLLIET----------------SSKSIIVIEDIDCSLDLTGQRR 305 (482)
Q Consensus 261 -----------------~i~~l~l~~~~--~~~~L~~l~~~~----------------~~~sIl~iDdiD~~~~~~~~r~ 305 (482)
+++.++..... ....++.++... ..+.||+|||+|.+ +
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L-~------ 147 (354)
T 1sxj_E 75 FVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-T------ 147 (354)
T ss_dssp -----------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-C------
T ss_pred ecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-C------
Confidence 12222222211 111344444332 25679999999984 1
Q ss_pred ccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEcc
Q 011573 306 KKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELS 385 (482)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~ 385 (482)
......|+..|+... .+..+|++||.++.+.|++.+ |+ ..+.|+
T Consensus 148 -----------------------------~~~~~~L~~~le~~~----~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~ 191 (354)
T 1sxj_E 148 -----------------------------KDAQAALRRTMEKYS----KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCP 191 (354)
T ss_dssp -----------------------------HHHHHHHHHHHHHST----TTEEEEEEESCSCSSCHHHHT--TS-EEEECC
T ss_pred -----------------------------HHHHHHHHHHHHhhc----CCCEEEEEeCCHHHHHHHHHh--hc-eEEecC
Confidence 123455777776542 347899999999999999999 88 689999
Q ss_pred CCCHHHHHHHHHHhccccCCCcH--HHHHHHhcCCCCCHHHHHHHhc
Q 011573 386 HCSYEAFKVLAKNYLNIESHNLF--DKIGELLGEAKMTPADVAEHLM 430 (482)
Q Consensus 386 ~p~~~~~~~l~~~~l~~~~~~~~--~~i~~l~~~~~~s~adi~~~l~ 430 (482)
.|+.++...+++..+..+..... +.+..++...+=++.++...|-
T Consensus 192 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 192 APSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp CCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999988754433222 2344444444556666655543
No 69
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.51 E-value=3e-13 Score=137.87 Aligned_cols=160 Identities=16% Similarity=0.086 Sum_probs=114.2
Q ss_pred CccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----CCceeecccccccCh
Q 011573 198 TFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----GYDLYDLELTAVKDN 273 (482)
Q Consensus 198 ~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----~~~i~~l~l~~~~~~ 273 (482)
.++.+++.++..+.+...+...+.. +.+..+.++|+||||||||++++++++.+ +.+++.+++....+.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~-------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRN-------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHS-------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC-------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 3478999999988888777665443 11112379999999999999999999998 677888887654322
Q ss_pred H--------------------------HHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccc
Q 011573 274 T--------------------------ELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKE 327 (482)
Q Consensus 274 ~--------------------------~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 327 (482)
. .+...+.....+.||+|||+|.+
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l------------------------------ 137 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL------------------------------ 137 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS------------------------------
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc------------------------------
Confidence 1 11222223346889999999984
Q ss_pred cccccchHHHHHHHHhhhcccccCCCCceEEEEecCCc---CcCCHhhhcCCCeee-EEEccCCCHHHHHHHHHHhccc
Q 011573 328 ERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYI---EKLDPALIRKGRMDK-HIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 328 ~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~---~~LD~aL~RpGR~d~-~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
....+..|+..++........+..+|++||.+ +.+++.+.+ ||.. .|.|++++.++...++...+..
T Consensus 138 ------~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~ 208 (389)
T 1fnn_A 138 ------APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKA 208 (389)
T ss_dssp ------CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHH
T ss_pred ------chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHh
Confidence 12345566666655421001247888999988 789999988 8875 8999999999999999887753
No 70
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=1.3e-13 Score=139.97 Aligned_cols=159 Identities=16% Similarity=0.220 Sum_probs=111.9
Q ss_pred CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh------CCceeecccccc
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL------GYDLYDLELTAV 270 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l------~~~i~~l~l~~~ 270 (482)
..++.+++.++..+.+.+.+...+.. ..++.++|+||||||||++++++++.+ +.+++.+++...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 34578899888887776555433221 235689999999999999999999998 888888876532
Q ss_pred cC----------------------hHH-H---HHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCccccc
Q 011573 271 KD----------------------NTE-L---RKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKL 324 (482)
Q Consensus 271 ~~----------------------~~~-L---~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 324 (482)
.+ ... + ...+.....++||+|||+|.+.+..
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~----------------------- 144 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY----------------------- 144 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS-----------------------
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC-----------------------
Confidence 11 122 2 2222333458999999999974200
Q ss_pred ccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCc---CcCCHhhhcCCCee-eEEEccCCCHHHHHHHHHHhc
Q 011573 325 GKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYI---EKLDPALIRKGRMD-KHIELSHCSYEAFKVLAKNYL 400 (482)
Q Consensus 325 ~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~---~~LD~aL~RpGR~d-~~I~~~~p~~~~~~~l~~~~l 400 (482)
....+..|+..++.. .+.++.+|++||.+ +.+++++.+ ||. ..|+|++++.++...++...+
T Consensus 145 ---------~~~~l~~l~~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 145 ---------NDDILYKLSRINSEV---NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp ---------CSTHHHHHHHHHHSC---CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred ---------cCHHHHHHhhchhhc---CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHH
Confidence 122466677777654 23457888999877 578999998 775 489999999999999999876
Q ss_pred c
Q 011573 401 N 401 (482)
Q Consensus 401 ~ 401 (482)
.
T Consensus 211 ~ 211 (386)
T 2qby_A 211 Q 211 (386)
T ss_dssp H
T ss_pred H
Confidence 4
No 71
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=3.3e-13 Score=136.19 Aligned_cols=157 Identities=22% Similarity=0.328 Sum_probs=111.1
Q ss_pred CceeeeccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC-----c
Q 011573 187 NWVHVVFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY-----D 261 (482)
Q Consensus 187 ~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~-----~ 261 (482)
.|. ....|.+|++++|.+.+++.|...+. . |.. + .||||||||||||++++++|+.+.. .
T Consensus 14 ~~~--~k~rp~~~~~~~g~~~~~~~L~~~i~----~-------g~~-~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~ 78 (340)
T 1sxj_C 14 PWV--EKYRPETLDEVYGQNEVITTVRKFVD----E-------GKL-P-HLLFYGPPGTGKTSTIVALAREIYGKNYSNM 78 (340)
T ss_dssp CHH--HHTCCSSGGGCCSCHHHHHHHHHHHH----T-------TCC-C-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHH
T ss_pred chH--HHhCCCcHHHhcCcHHHHHHHHHHHh----c-------CCC-c-eEEEECCCCCCHHHHHHHHHHHHcCCCccce
Confidence 454 34578999999998877766644332 1 222 2 3999999999999999999999743 3
Q ss_pred eeecccccccChHHHHHHHHh---c-----CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccc
Q 011573 262 LYDLELTAVKDNTELRKLLIE---T-----SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNN 333 (482)
Q Consensus 262 i~~l~l~~~~~~~~L~~l~~~---~-----~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (482)
+..++.+.......++..+.. . ..+.|++|||+|.+-
T Consensus 79 ~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~----------------------------------- 123 (340)
T 1sxj_C 79 VLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT----------------------------------- 123 (340)
T ss_dssp EEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----------------------------------
T ss_pred EEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----------------------------------
Confidence 455555543334445443322 1 237899999999852
Q ss_pred hHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 334 SQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 334 ~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
......|+..++... ....+|++||.+..+.|++++ |+. .+.|+.++.++....+...+.
T Consensus 124 -~~~~~~L~~~le~~~----~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~ 183 (340)
T 1sxj_C 124 -NAAQNALRRVIERYT----KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLV 183 (340)
T ss_dssp -HHHHHHHHHHHHHTT----TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCC----CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHH
Confidence 113455777777542 346788889999999999999 886 889999999988888887664
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.50 E-value=3.1e-13 Score=150.71 Aligned_cols=147 Identities=20% Similarity=0.246 Sum_probs=107.3
Q ss_pred cCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----------CCcee
Q 011573 194 EHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----------GYDLY 263 (482)
Q Consensus 194 ~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----------~~~i~ 263 (482)
..|..|+.++|.++.++.++..+.. ..+.++||+||||||||++|+++|+.+ +.+++
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 3567899999999988887665432 335689999999999999999999997 88888
Q ss_pred ecccccc---cChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHH
Q 011573 264 DLELTAV---KDNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTL 338 (482)
Q Consensus 264 ~l~l~~~---~~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 338 (482)
.+++..- .....++.+|..+. .++||||| . .. ...
T Consensus 241 ~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD---~------~~-------------------------------~~~ 280 (758)
T 3pxi_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID---A------AI-------------------------------DAS 280 (758)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC---C------------------------------------------
T ss_pred EecccccccchHHHHHHHHHHHHHhcCCEEEEEc---C------ch-------------------------------hHH
Confidence 8887221 12335777776653 68999999 1 00 012
Q ss_pred HHHHhhhcccccCCCCceEEEEecCCcC-----cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 339 SGLLNFIDGLWSACGGERLIVFTTNYIE-----KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 339 s~LL~~ldg~~s~~~~~~iiI~TTN~~~-----~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
+.|+..|+ .+++.+|+|||..+ .+||+|+| ||. .|.|+.|+.+++..|++.++..
T Consensus 281 ~~L~~~l~------~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 281 NILKPSLA------RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp ---CCCTT------SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHh------cCCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 23444444 24578999999988 79999999 996 6999999999999999987654
No 73
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.49 E-value=1.1e-13 Score=154.31 Aligned_cols=158 Identities=20% Similarity=0.296 Sum_probs=111.9
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----------CCceee
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----------GYDLYD 264 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----------~~~i~~ 264 (482)
.|..|+.++|.++..+.+++.+. . ..+.++||+||||||||++++++|+.+ +..++.
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~----~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLC----R---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT----S---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hcCCCCCccCCHHHHHHHHHHHh----c---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 46789999999888877765442 1 246789999999999999999999987 666777
Q ss_pred ccccccc--------ChHHHHHHHHhcC--CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccch
Q 011573 265 LELTAVK--------DNTELRKLLIETS--SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNS 334 (482)
Q Consensus 265 l~l~~~~--------~~~~L~~l~~~~~--~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (482)
+++..+. ....++.++.... .++||||||||.+++ .+. .....
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~---~~~------------------------~~~~~ 300 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIG---AGA------------------------ASGGQ 300 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTT---SCC------------------------SSSCH
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhh---cCC------------------------CCcch
Confidence 7766542 1356778887665 479999999999752 111 00011
Q ss_pred HHHHHHHHhhhcccccCCCCceEEEEecCCcC-----cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 335 QVTLSGLLNFIDGLWSACGGERLIVFTTNYIE-----KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 335 ~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~-----~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
....+.|...++ .++..+|++||.++ .+||+|.| ||+ .|.|+.|+.+++..+++.+..
T Consensus 301 ~~~~~~L~~~l~------~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 301 VDAANLIKPLLS------SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp HHHHHHHSSCSS------SCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh------CCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHH
Confidence 112222223332 13477888888754 57899999 998 799999999999999987654
No 74
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.48 E-value=1.3e-12 Score=131.85 Aligned_cols=151 Identities=16% Similarity=0.155 Sum_probs=107.7
Q ss_pred cCccccccCCCCchHHHHHHHHHHHhCC------------------------ceeecccc---cccChHHHHHHHHhcC-
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLLGY------------------------DLYDLELT---AVKDNTELRKLLIETS- 284 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l~~------------------------~i~~l~l~---~~~~~~~L~~l~~~~~- 284 (482)
.+.+||||||||||||++|+++|+.+.. +++.++.. .-...+.++.++....
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~ 102 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNE 102 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhh
Confidence 4568999999999999999999998853 23444432 1123456777766542
Q ss_pred -----CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEE
Q 011573 285 -----SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIV 359 (482)
Q Consensus 285 -----~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI 359 (482)
.+.|++|||+|.+- ....+.||..|+.. +...++|
T Consensus 103 ~~~~~~~kvviIdead~l~------------------------------------~~a~naLLk~lEep----~~~~~~I 142 (334)
T 1a5t_A 103 HARLGGAKVVWVTDAALLT------------------------------------DAAANALLKTLEEP----PAETWFF 142 (334)
T ss_dssp CCTTSSCEEEEESCGGGBC------------------------------------HHHHHHHHHHHTSC----CTTEEEE
T ss_pred ccccCCcEEEEECchhhcC------------------------------------HHHHHHHHHHhcCC----CCCeEEE
Confidence 46899999999862 12356788888763 3458899
Q ss_pred EecCCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccccCCCcHHHHHHHhcCCCCCHHHHHHHhc
Q 011573 360 FTTNYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLGEAKMTPADVAEHLM 430 (482)
Q Consensus 360 ~TTN~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~~~~~s~adi~~~l~ 430 (482)
++||.++.|+|++++ |+. .+.|+.|+.++...++...... ..+.+..++...+-++..+...+-
T Consensus 143 l~t~~~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~~~----~~~~~~~l~~~s~G~~r~a~~~l~ 206 (334)
T 1a5t_A 143 LATREPERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREVTM----SQDALLAALRLSAGSPGAALALFQ 206 (334)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHCCC----CHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred EEeCChHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhcCC----CHHHHHHHHHHcCCCHHHHHHHhc
Confidence 999999999999999 885 7999999999999988877521 223334444444556666654443
No 75
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.46 E-value=1e-13 Score=122.80 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=65.7
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccChHHHH
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDNTELR 277 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~~~L~ 277 (482)
.++|.....+.+.+.+...... ...+||+||||||||++|+++++.. +.+++ +++..+.+...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~-----------~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSET-----------DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTC-----------CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHH
T ss_pred CceeCCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhh
Confidence 4677777888887777665433 5689999999999999999999987 77899 9999886555566
Q ss_pred HHHHhcCCCeEEEEeCCccc
Q 011573 278 KLLIETSSKSIIVIEDIDCS 297 (482)
Q Consensus 278 ~l~~~~~~~sIl~iDdiD~~ 297 (482)
.++..+ .+++|||||||.+
T Consensus 70 ~~~~~a-~~g~l~ldei~~l 88 (145)
T 3n70_A 70 DFIALA-QGGTLVLSHPEHL 88 (145)
T ss_dssp HHHHHH-TTSCEEEECGGGS
T ss_pred cHHHHc-CCcEEEEcChHHC
Confidence 666555 4579999999986
No 76
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.39 E-value=2.2e-12 Score=136.73 Aligned_cols=146 Identities=18% Similarity=0.169 Sum_probs=93.8
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC--ceeecccccccChHHH--
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY--DLYDLELTAVKDNTEL-- 276 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~--~i~~l~l~~~~~~~~L-- 276 (482)
.++|.+++++.+...+.. +.++||+||||||||++|+++|+.++. ++..+.+.. .+...+
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcC
Confidence 356777777666443321 368999999999999999999999854 333333321 011111
Q ss_pred ---------HHHHHhcC-----CCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHH
Q 011573 277 ---------RKLLIETS-----SKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLL 342 (482)
Q Consensus 277 ---------~~l~~~~~-----~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 342 (482)
...+.... .++|||||||+.+ ...+.+.||
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~------------------------------------~~~~q~~LL 130 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKA------------------------------------GPAILNTLL 130 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGC------------------------------------CHHHHHHHH
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhh------------------------------------cHHHHHHHH
Confidence 11222111 4579999999874 123566677
Q ss_pred hhhcc-------cccCCCCceEEEEecCCcCc---CCHhhhcCCCeeeEEEccCCCH-HHHHHHHHHhcc
Q 011573 343 NFIDG-------LWSACGGERLIVFTTNYIEK---LDPALIRKGRMDKHIELSHCSY-EAFKVLAKNYLN 401 (482)
Q Consensus 343 ~~ldg-------~~s~~~~~~iiI~TTN~~~~---LD~aL~RpGR~d~~I~~~~p~~-~~~~~l~~~~l~ 401 (482)
..|+. .... -..+++|+|||.+.. +.+|+++ ||..+|.+++|+. +++..|++....
T Consensus 131 ~~lee~~v~i~G~~~~-~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 131 TAINERQFRNGAHVEK-IPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp HHHHSSEEECSSSEEE-CCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred HHHHHHhccCCCCcCC-cchhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 77752 2111 123467888886432 4569999 9999999999987 778889887653
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.38 E-value=1.7e-12 Score=146.70 Aligned_cols=155 Identities=17% Similarity=0.331 Sum_probs=112.3
Q ss_pred cccccChHHHHHHHHHHHHHhhCHHHHHHhCCC----cCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccC
Q 011573 200 QTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRA----WKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKD 272 (482)
Q Consensus 200 ~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~----~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~ 272 (482)
+.|+|.+..++.+...+.... .|.. +..++||+||||||||++|++||+.+ +.+++.++|+.+..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~--------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~ 629 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRAR--------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 629 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHG--------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCS
T ss_pred cccCCcHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccc
Confidence 457788887777766665432 1211 22479999999999999999999999 78999999887643
Q ss_pred h-------------------HHHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccc
Q 011573 273 N-------------------TELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNN 333 (482)
Q Consensus 273 ~-------------------~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (482)
. ..+...+.. ...+||||||||.+
T Consensus 630 ~~~~s~l~g~~~~~~G~~~~g~l~~~~~~-~~~~vl~lDEi~~l------------------------------------ 672 (854)
T 1qvr_A 630 KHAVSRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDEIEKA------------------------------------ 672 (854)
T ss_dssp SGGGGGC--------------CHHHHHHH-CSSEEEEESSGGGS------------------------------------
T ss_pred hhHHHHHcCCCCCCcCccccchHHHHHHh-CCCeEEEEeccccc------------------------------------
Confidence 2 112222222 34689999999985
Q ss_pred hHHHHHHHHhhhccccc--CCC-----CceEEEEecCC--------------------------cCcCCHhhhcCCCeee
Q 011573 334 SQVTLSGLLNFIDGLWS--ACG-----GERLIVFTTNY--------------------------IEKLDPALIRKGRMDK 380 (482)
Q Consensus 334 ~~~~ls~LL~~ldg~~s--~~~-----~~~iiI~TTN~--------------------------~~~LD~aL~RpGR~d~ 380 (482)
....++.||..||.-.- ..+ .+.+||+|||. ...+.|+|+. |||.
T Consensus 673 ~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~ 750 (854)
T 1qvr_A 673 HPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDE 750 (854)
T ss_dssp CHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSB
T ss_pred CHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCe
Confidence 22466778888874311 111 25789999997 2357888888 9999
Q ss_pred EEEccCCCHHHHHHHHHHhcc
Q 011573 381 HIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 381 ~I~~~~p~~~~~~~l~~~~l~ 401 (482)
.+.|.+|+.+++..|++.++.
T Consensus 751 ~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 751 IVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp CCBCCCCCHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999875
No 78
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.38 E-value=1.9e-12 Score=128.95 Aligned_cols=152 Identities=16% Similarity=0.205 Sum_probs=102.1
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccChHHHH
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDNTELR 277 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~~~L~ 277 (482)
+++|.....+.+.+.+..... ...++||+||||||||++|++|++.. +.+++.++|+.+...---.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~-----------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAP-----------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCS-----------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 467888888888777766542 25789999999999999999999976 6789999998874321112
Q ss_pred HHHHh-----------------cCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHH
Q 011573 278 KLLIE-----------------TSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSG 340 (482)
Q Consensus 278 ~l~~~-----------------~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 340 (482)
.+|.. ...+++|||||||.+. ......
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~------------------------------------~~~q~~ 115 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS------------------------------------PLMQVR 115 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCC------------------------------------HHHHHH
T ss_pred HhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCC------------------------------------HHHHHH
Confidence 22221 1235799999999862 123445
Q ss_pred HHhhhcccc-cC------CCCceEEEEecCCc-------CcCCHhhhcCCCee-eEEEccCCC--HHHHHHHHHHhcc
Q 011573 341 LLNFIDGLW-SA------CGGERLIVFTTNYI-------EKLDPALIRKGRMD-KHIELSHCS--YEAFKVLAKNYLN 401 (482)
Q Consensus 341 LL~~ldg~~-s~------~~~~~iiI~TTN~~-------~~LD~aL~RpGR~d-~~I~~~~p~--~~~~~~l~~~~l~ 401 (482)
||..|+... .. ....+.||+|||.. ..++++|.. ||. ..|.+|+.. .++...|+..++.
T Consensus 116 Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~ 191 (304)
T 1ojl_A 116 LLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLR 191 (304)
T ss_dssp HHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred HHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHH
Confidence 676666431 00 01236788888875 346778887 874 446666665 4566777777764
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.37 E-value=5.2e-13 Score=118.00 Aligned_cols=83 Identities=14% Similarity=0.053 Sum_probs=63.0
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHHHHH
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLL 280 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~~l~ 280 (482)
+++|.+...+++.+.+..+... ..++||+||||||||++|+++++..+ +++.++++.+... .+..++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~-----------~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~-~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR-----------TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID-MPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC-----------SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH-CHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH-hhhhHH
Confidence 3677778888888887766433 56899999999999999999999988 9999998876322 134455
Q ss_pred HhcCCCeEEEEeCCccc
Q 011573 281 IETSSKSIIVIEDIDCS 297 (482)
Q Consensus 281 ~~~~~~sIl~iDdiD~~ 297 (482)
..+ .+++|||||||.+
T Consensus 72 ~~a-~~~~l~lDei~~l 87 (143)
T 3co5_A 72 QKA-EGGVLYVGDIAQY 87 (143)
T ss_dssp HHT-TTSEEEEEECTTC
T ss_pred HhC-CCCeEEEeChHHC
Confidence 444 4689999999986
No 80
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=4.6e-12 Score=126.25 Aligned_cols=122 Identities=13% Similarity=0.168 Sum_probs=95.4
Q ss_pred CccccccCCCCchHHHHHHHHHHHh------CCceeeccccc-ccChHHHHHHHHhcC------CCeEEEEeCCcccccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL------GYDLYDLELTA-VKDNTELRKLLIETS------SKSIIVIEDIDCSLDL 300 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l------~~~i~~l~l~~-~~~~~~L~~l~~~~~------~~sIl~iDdiD~~~~~ 300 (482)
...||||||||||||++++++|+.+ ..+++.++... -.+-+.++.++..+. ...|++|||+|.+-
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt-- 95 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT-- 95 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC--
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhC--
Confidence 3589999999999999999999874 45777777653 234556777766542 35799999999862
Q ss_pred cccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeee
Q 011573 301 TGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDK 380 (482)
Q Consensus 301 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~ 380 (482)
....+.||..|+.. ++..++|++||.+.+|.|+++. |
T Consensus 96 ----------------------------------~~a~naLLk~LEep----~~~t~fIl~t~~~~kl~~tI~S--R--- 132 (305)
T 2gno_A 96 ----------------------------------QQAANAFLKALEEP----PEYAVIVLNTRRWHYLLPTIKS--R--- 132 (305)
T ss_dssp ----------------------------------HHHHHHTHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--T---
T ss_pred ----------------------------------HHHHHHHHHHHhCC----CCCeEEEEEECChHhChHHHHc--e---
Confidence 22356788888864 3557888889999999999999 8
Q ss_pred EEEccCCCHHHHHHHHHHhc
Q 011573 381 HIELSHCSYEAFKVLAKNYL 400 (482)
Q Consensus 381 ~I~~~~p~~~~~~~l~~~~l 400 (482)
.++|+.|+.++....+...+
T Consensus 133 ~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 133 VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SEEEECCCCHHHHHHHHHHH
T ss_pred eEeCCCCCHHHHHHHHHHHh
Confidence 89999999999888887765
No 81
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.33 E-value=6.9e-12 Score=153.66 Aligned_cols=137 Identities=20% Similarity=0.327 Sum_probs=98.1
Q ss_pred CccccccCCCCchHHHHH-HHHHHHhCCceeecccccccChHHHHHHHHhc-----------------CCCeEEEEeCCc
Q 011573 234 KRGYLLYGPPGTGKSTMI-AAMANLLGYDLYDLELTAVKDNTELRKLLIET-----------------SSKSIIVIEDID 295 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~-~aiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~-----------------~~~sIl~iDdiD 295 (482)
++++||+||||||||++| +++++..++.++.+++++..+...+...+... ..++||||||||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 589999999999999999 55555558889999999988877777776642 135799999999
Q ss_pred ccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCC------CceEEEEecCCcC---
Q 011573 296 CSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACG------GERLIVFTTNYIE--- 366 (482)
Q Consensus 296 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~------~~~iiI~TTN~~~--- 366 (482)
..- ..+ .+.......+.+++. ..|++.... .++.+|+|||++.
T Consensus 1347 mp~----~d~-----------------------yg~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gG 1398 (2695)
T 4akg_A 1347 LPK----LDK-----------------------YGSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPG 1398 (2695)
T ss_dssp CSC----CCS-----------------------SSCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTT
T ss_pred ccc----ccc-----------------------cCchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCC
Confidence 621 000 011112223333331 224443211 2368999999995
Q ss_pred --cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 367 --KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 367 --~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
.|||+|+| || ..|.+++|+.+++..|+..++.
T Consensus 1399 R~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1399 RIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp CCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred CccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHHH
Confidence 79999999 99 6899999999999999988874
No 82
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=2.6e-13 Score=147.12 Aligned_cols=127 Identities=19% Similarity=0.242 Sum_probs=86.5
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeeccc----ccccC---hHHHH-------HHHHhcCCCeEEEEeCCccccccc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLEL----TAVKD---NTELR-------KLLIETSSKSIIVIEDIDCSLDLT 301 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l----~~~~~---~~~L~-------~l~~~~~~~sIl~iDdiD~~~~~~ 301 (482)
++||+||||||||++|+++|+.++..++.... ..+.. ..... ..+. ...++|++|||||.+-
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~-~A~~gil~IDEid~l~--- 404 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALV-LADGGIAVIDEIDKMR--- 404 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHH-HHSSSEECCTTTTCCC---
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeE-ecCCCcEEeehhhhCC---
Confidence 79999999999999999999999877665322 22200 00000 0011 1246899999999852
Q ss_pred ccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccc---------cCCCCceEEEEecCCcC------
Q 011573 302 GQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLW---------SACGGERLIVFTTNYIE------ 366 (482)
Q Consensus 302 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~---------s~~~~~~iiI~TTN~~~------ 366 (482)
....+.|+..|+.-. ........||+|||.++
T Consensus 405 ---------------------------------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~ 451 (595)
T 3f9v_A 405 ---------------------------------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISE 451 (595)
T ss_dssp ---------------------------------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTT
T ss_pred ---------------------------------HhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcc
Confidence 123455777776321 11123467999999987
Q ss_pred -------cCCHhhhcCCCeee-EEEccCCCHHHHHHHHHHhccc
Q 011573 367 -------KLDPALIRKGRMDK-HIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 367 -------~LD~aL~RpGR~d~-~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
.|++||++ |||. .+..++|+.+ ...|+++.+..
T Consensus 452 ~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 452 RPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp SCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred cCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 89999999 9984 5667788888 88888887754
No 83
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.28 E-value=3.9e-12 Score=116.25 Aligned_cols=94 Identities=18% Similarity=0.339 Sum_probs=66.5
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh----CCceeecccccc
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL----GYDLYDLELTAV 270 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----~~~i~~l~l~~~ 270 (482)
.+.+|++++......+.+++.+..|..+ ..++..++++|+||||||||+|++++|+.+ |..++.+++..+
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHN------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHS------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHh------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 4568999988655566666777666643 344456889999999999999999999987 566666655443
Q ss_pred cChHHHH---------HHHHhcCCCeEEEEeCCcc
Q 011573 271 KDNTELR---------KLLIETSSKSIIVIEDIDC 296 (482)
Q Consensus 271 ~~~~~L~---------~l~~~~~~~sIl~iDdiD~ 296 (482)
. ..+. .++.....+.+|+|||++.
T Consensus 79 ~--~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~ 111 (180)
T 3ec2_A 79 I--FRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGS 111 (180)
T ss_dssp H--HHHHHHHHHTCCSHHHHHHHTCSEEEEETCSS
T ss_pred H--HHHHHHhcCchHHHHHHHhcCCCEEEEeCCCC
Confidence 1 1111 2333445789999999986
No 84
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.20 E-value=5.7e-12 Score=128.92 Aligned_cols=121 Identities=21% Similarity=0.252 Sum_probs=88.8
Q ss_pred hCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHHHHHHhcCCCeEEEEeCCcccccccccccccc
Q 011573 229 IGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKK 308 (482)
Q Consensus 229 ~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~ 308 (482)
.+++.++.++|+|||||||||+++++|+.++..++.++... ......+......+++++||++..... .++-
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~~~~--~r~l-- 235 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGTGGE--SRDL-- 235 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCSTTT--TTTC--
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHHHHH--Hhhc--
Confidence 58888899999999999999999999999988776643322 122333555667788999999986421 1110
Q ss_pred cccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhhhcCCCeeeEEEccC
Q 011573 309 EKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPALIRKGRMDKHIELSH 386 (482)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~ 386 (482)
.......+.+.+.+.+||. +.++++|||++.+ ++++||||++..+...+
T Consensus 236 ---------------------~~~~~~~~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 236 ---------------------PSGQGINNLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp ---------------------CCCSHHHHHHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred ---------------------cccCcchHHHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 0001122567788888885 4578899999999 89999999998888766
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.20 E-value=1.4e-10 Score=119.04 Aligned_cols=163 Identities=10% Similarity=0.093 Sum_probs=104.6
Q ss_pred ccccccChHHHHHHHHHH-HHHhhCHHHHHHhCCCcCccccc--cCCCCchHHHHHHHHHHHh---------CCceeecc
Q 011573 199 FQTLAMEPAEKKEIIDDL-IAFSKSEDFYARIGRAWKRGYLL--YGPPGTGKSTMIAAMANLL---------GYDLYDLE 266 (482)
Q Consensus 199 ~~~l~~~~~~k~~i~~~l-~~fl~~~~~y~~~g~~~~rg~LL--~GPpGtGKTsl~~aiA~~l---------~~~i~~l~ 266 (482)
.+.+++-++..+.|...+ ....... ...++.++| +||||||||++++++++.+ +..++.++
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 367888888887776665 4433210 012467899 9999999999999999887 45666666
Q ss_pred cccccCh----------------------H----HHHHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCc
Q 011573 267 LTAVKDN----------------------T----ELRKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDP 320 (482)
Q Consensus 267 l~~~~~~----------------------~----~L~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~ 320 (482)
+....+. . .+...+.....+.||+|||+|.+.. .+
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~---~~---------------- 154 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLS---SP---------------- 154 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHS---CT----------------
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhh---cc----------------
Confidence 5432111 1 1222333335689999999998631 00
Q ss_pred ccccccccccccchHHHHHHHHhhhcccccCCC--CceEEEEecCCcC---cCC---HhhhcCCCeeeEEEccCCCHHHH
Q 011573 321 RQKLGKEERETNNSQVTLSGLLNFIDGLWSACG--GERLIVFTTNYIE---KLD---PALIRKGRMDKHIELSHCSYEAF 392 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~--~~~iiI~TTN~~~---~LD---~aL~RpGR~d~~I~~~~p~~~~~ 392 (482)
......+..|+..++.... .+ ..+.+|+|||.++ .++ +.+.+ |+...+.+++++.++.
T Consensus 155 -----------~~~~~~l~~l~~~~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~ 220 (412)
T 1w5s_A 155 -----------RIAAEDLYTLLRVHEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSREL 220 (412)
T ss_dssp -----------TSCHHHHHHHHTHHHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHH
T ss_pred -----------CcchHHHHHHHHHHHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHH
Confidence 0122345556666554321 12 4577888887665 455 67777 5655699999999999
Q ss_pred HHHHHHhcc
Q 011573 393 KVLAKNYLN 401 (482)
Q Consensus 393 ~~l~~~~l~ 401 (482)
..++...+.
T Consensus 221 ~~ll~~~~~ 229 (412)
T 1w5s_A 221 YTILEQRAE 229 (412)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999977654
No 86
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.08 E-value=1.8e-10 Score=107.25 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=43.5
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHHHHHHhcCCCeEEEEeCCcc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIEDIDC 296 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~~~~sIl~iDdiD~ 296 (482)
|+|.++++|||||||||||++|.|+|+.++..++.+.-+. +. ..+.......||+|||+|.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~----f~l~~l~~~kIiiLDEad~ 114 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SH----FWLEPLTDTKVAMLDDATT 114 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SC----GGGGGGTTCSSEEEEEECH
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--ch----hhhcccCCCCEEEEECCCc
Confidence 4777889999999999999999999999976665432111 10 0122333456999999986
No 87
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.08 E-value=8.9e-11 Score=108.99 Aligned_cols=97 Identities=16% Similarity=0.230 Sum_probs=63.7
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCC-cCccccccCCCCchHHHHHHHHHHHh---CCceeecccccc
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRA-WKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAV 270 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~-~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~ 270 (482)
.+.+|+++++.....+.+++.+..++.. .+.. .+++++|+||||||||++++++|+++ +.+++.+++..+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAE------YEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHH------CCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHH------hhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 3568999988765555566666666542 1111 12799999999999999999999988 667766666543
Q ss_pred cC-------hHHHHHHHHhcCCCeEEEEeCCccc
Q 011573 271 KD-------NTELRKLLIETSSKSIIVIEDIDCS 297 (482)
Q Consensus 271 ~~-------~~~L~~l~~~~~~~sIl~iDdiD~~ 297 (482)
.. ...+..++.....+.+|+|||++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~ 127 (202)
T 2w58_A 94 FRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 10 0011222333334569999999873
No 88
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.97 E-value=8.4e-10 Score=119.93 Aligned_cols=53 Identities=32% Similarity=0.311 Sum_probs=41.8
Q ss_pred ccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCC
Q 011573 193 FEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGY 260 (482)
Q Consensus 193 ~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~ 260 (482)
..+|..|++++|...+++.+...+ .. ...++|+||||||||+++++||+.+..
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i----~~-----------g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAA----NQ-----------KRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHH----HT-----------TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccccccceEECchhhHhhccccc----cC-----------CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 346788999999988776654333 22 368999999999999999999998853
No 89
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.92 E-value=6.4e-10 Score=110.86 Aligned_cols=95 Identities=22% Similarity=0.390 Sum_probs=61.2
Q ss_pred CCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhC----Cceeeccccccc
Q 011573 196 PATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLG----YDLYDLELTAVK 271 (482)
Q Consensus 196 p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~----~~i~~l~l~~~~ 271 (482)
+.+|+++......+..++..+..|+.. .+..+.++++||||||||||+|+.|+|+++. .+++.+++..+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~------~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQ------YPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHH------CSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHh------ccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 478999988664455555666666542 2222368999999999999999999998765 666655554320
Q ss_pred -------ChHHHHHHHHhcCCCeEEEEeCCcc
Q 011573 272 -------DNTELRKLLIETSSKSIIVIEDIDC 296 (482)
Q Consensus 272 -------~~~~L~~l~~~~~~~sIl~iDdiD~ 296 (482)
....+..++.......+|+||||+.
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~ 225 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDIGA 225 (308)
T ss_dssp HHHHCCCC----CCTTHHHHTSSEEEEETCCC
T ss_pred HHHHHHhccchHHHHHHHhcCCCEEEEcCCCC
Confidence 1111112222233567999999976
No 90
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.89 E-value=8.8e-10 Score=130.15 Aligned_cols=147 Identities=12% Similarity=0.180 Sum_probs=89.7
Q ss_pred CCccccccChHHHHHHHHHHHHHhhC----------HHHHHH------hCCC----------cCcc--ccccCCCCchHH
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKS----------EDFYAR------IGRA----------WKRG--YLLYGPPGTGKS 248 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~----------~~~y~~------~g~~----------~~rg--~LL~GPpGtGKT 248 (482)
.+|+++.+..+.|+.+++.+...+.. ++.|+. .|+. +|+| +|||||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 67999999999999999999888843 334444 2332 4455 999999999999
Q ss_pred HHHHHHHHHhCCc-----eeecc--------------cccc--c----ChHHHHHHHHhc--CCCeEEEEeCCccccccc
Q 011573 249 TMIAAMANLLGYD-----LYDLE--------------LTAV--K----DNTELRKLLIET--SSKSIIVIEDIDCSLDLT 301 (482)
Q Consensus 249 sl~~aiA~~l~~~-----i~~l~--------------l~~~--~----~~~~L~~l~~~~--~~~sIl~iDdiD~~~~~~ 301 (482)
.||+++|.+...+ +++++ +..+ . ++..|+.++..+ ..+|+|++|+||++++..
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred HHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCccc
Confidence 9999999876333 33322 1211 1 345666666433 479999999999987432
Q ss_pred ccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCc
Q 011573 302 GQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYI 365 (482)
Q Consensus 302 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~ 365 (482)
+.+... .........+.++++|..||++....+ + +|.+||+.
T Consensus 1177 ~~~g~~-------------------~~~~~~~~~r~~~q~l~~~~~~~~~~~--v-~v~~~n~~ 1218 (1706)
T 3cmw_A 1177 EIEGEI-------------------GDSHMGLAARMMSQAMRKLAGNLKQSN--T-LLIFINQI 1218 (1706)
T ss_dssp HHHSCT-------------------TCCCTTHHHHHHHHHHHHHHHHHHHTT--C-EEEEEECE
T ss_pred cccccc-------------------ccccccHHHHHHHHHHHHHHhhhccCC--e-EEEEeccc
Confidence 211100 000113344579999999999765433 4 44477765
No 91
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.85 E-value=2e-08 Score=124.32 Aligned_cols=135 Identities=16% Similarity=0.309 Sum_probs=94.8
Q ss_pred CccccccCCCCchHHHHHHHH-HHHhCCceeecccccccChHHHHHHHHh------c------------CCCeEEEEeCC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAM-ANLLGYDLYDLELTAVKDNTELRKLLIE------T------------SSKSIIVIEDI 294 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~ai-A~~l~~~i~~l~l~~~~~~~~L~~l~~~------~------------~~~sIl~iDdi 294 (482)
++++||+||||||||++++.. ++..+.+++.+++++..+...+...+.. . .++.|+|||||
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 578999999999999887654 4444778889999998888888877753 0 12379999999
Q ss_pred cccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhc--ccccCCC------CceEEEEecCCcC
Q 011573 295 DCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFID--GLWSACG------GERLIVFTTNYIE 366 (482)
Q Consensus 295 D~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld--g~~s~~~------~~~iiI~TTN~~~ 366 (482)
+.-- . +.-..+..+.-|...|| |++.... .+..+|+|.|++.
T Consensus 1384 Nmp~-----~-------------------------D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~ 1433 (3245)
T 3vkg_A 1384 NLPS-----T-------------------------DKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPT 1433 (3245)
T ss_dssp TCCC-----C-------------------------CTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTT
T ss_pred CCCC-----c-------------------------cccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCC
Confidence 9621 0 00111223344444444 3322111 3456889999883
Q ss_pred -----cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhcc
Q 011573 367 -----KLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLN 401 (482)
Q Consensus 367 -----~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~ 401 (482)
.|+|+|+| ||- .+.+++|+.+....|+..++.
T Consensus 1434 ~gGr~~l~~Rf~r--~F~-vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1434 DAGRVQLTHRFLR--HAP-ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp STTCCCCCHHHHT--TCC-EEECCCCCHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHh--hce-EEEeCCCCHHHHHHHHHHHHH
Confidence 59999999 996 699999999999999876653
No 92
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.83 E-value=8e-08 Score=118.24 Aligned_cols=125 Identities=18% Similarity=0.187 Sum_probs=94.7
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHHHHHHhcC-CCeEEEEeCCcccccccccccccccccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETS-SKSIIVIEDIDCSLDLTGQRRKKKEKKE 312 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~~-~~sIl~iDdiD~~~~~~~~r~~~~~~~~ 312 (482)
..|.+++||||||||++++++|+.+|.+++.++|+.-.+...+.++|..+. .+++++||||+.+-
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~-------------- 710 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLD-------------- 710 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSC--------------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcC--------------
Confidence 478999999999999999999999999999999999888889998887664 57999999999852
Q ss_pred cCCCCCCcccccccccccccchHHHHHHH-------Hhhh---------cccccCCCCceEEEEecC----CcCcCCHhh
Q 011573 313 DEGNDKDPRQKLGKEERETNNSQVTLSGL-------LNFI---------DGLWSACGGERLIVFTTN----YIEKLDPAL 372 (482)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~L-------L~~l---------dg~~s~~~~~~iiI~TTN----~~~~LD~aL 372 (482)
..+++.+ ++.+ +|..-.......+++|.| ....|+++|
T Consensus 711 ----------------------~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~L 768 (2695)
T 4akg_A 711 ----------------------EKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENL 768 (2695)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHH
T ss_pred ----------------------hHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHH
Confidence 1122222 2222 111001112345778888 455799999
Q ss_pred hcCCCeeeEEEccCCCHHHHHHHHH
Q 011573 373 IRKGRMDKHIELSHCSYEAFKVLAK 397 (482)
Q Consensus 373 ~RpGR~d~~I~~~~p~~~~~~~l~~ 397 (482)
.+ || +.|.|.+|+.+...++.-
T Consensus 769 k~--~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 769 KK--SF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp HT--TE-EEEECCCCCHHHHHHHHH
T ss_pred Hh--he-EEEEeeCCCHHHHHHHHH
Confidence 99 99 699999999998777653
No 93
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.79 E-value=2.2e-09 Score=106.78 Aligned_cols=115 Identities=15% Similarity=0.167 Sum_probs=67.0
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccc------ccc-cC-hHHHHHHHHhcC-CCeEEEEeCCcccccc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLEL------TAV-KD-NTELRKLLIETS-SKSIIVIEDIDCSLDL 300 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l------~~~-~~-~~~L~~l~~~~~-~~sIl~iDdiD~~~~~ 300 (482)
|++..+.+||+||||||||+|+.++|...|.++..+++ ... .+ +..+..++.... .+ +||||+|+.+...
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLKNVIGA 197 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCTTTC--
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEecccccccc
Confidence 45566678999999999999999999876665444444 111 11 222333333222 23 9999999996421
Q ss_pred cccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcCCHhh
Q 011573 301 TGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKLDPAL 372 (482)
Q Consensus 301 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~LD~aL 372 (482)
.. .....+.....+..+|..|+++... .+..+|++|| +..+|+++
T Consensus 198 ---~~---------------------~~s~~G~v~~~lrqlL~~L~~~~k~--~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 198 ---AG---------------------GNTTSGGISRGAFDLLSDIGAMAAS--RGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHHH--HTCEEEEECC-CSSCSSSH
T ss_pred ---cc---------------------cccccchHHHHHHHHHHHHHHHHhh--CCCEEEEEeC-CcccchhH
Confidence 10 0000111234566777777766443 2367888888 56666664
No 94
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.78 E-value=4.4e-09 Score=98.17 Aligned_cols=120 Identities=16% Similarity=0.192 Sum_probs=75.7
Q ss_pred ccccccCCCCchHHHHHHHHHHH--------hC-Cceeeccccccc---------------------ChHHHHHHHH-hc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL--------LG-YDLYDLELTAVK---------------------DNTELRKLLI-ET 283 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~--------l~-~~i~~l~l~~~~---------------------~~~~L~~l~~-~~ 283 (482)
.-+|++||||||||+++.+++.. .| .++|..++..+. ....+...+. ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 46899999999999999887544 24 667655544331 0122333321 12
Q ss_pred CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecC
Q 011573 284 SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTN 363 (482)
Q Consensus 284 ~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN 363 (482)
..++||+|||++.+++ .+.. ... . ..+|..+..- .....-||++|+
T Consensus 86 ~~~~vliIDEAq~l~~---~~~~-----------------------~~e-~----~rll~~l~~~---r~~~~~iil~tq 131 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWP---ARSA-----------------------GSK-I----PENVQWLNTH---RHQGIDIFVLTQ 131 (199)
T ss_dssp GTTCEEEETTGGGTSB---CCCT-----------------------TCC-C----CHHHHGGGGT---TTTTCEEEEEES
T ss_pred cCceEEEEEChhhhcc---Cccc-----------------------cch-h----HHHHHHHHhc---CcCCeEEEEECC
Confidence 3589999999999752 1100 000 0 1244444322 123467788888
Q ss_pred CcCcCCHhhhcCCCeeeEEEccCCCHH
Q 011573 364 YIEKLDPALIRKGRMDKHIELSHCSYE 390 (482)
Q Consensus 364 ~~~~LD~aL~RpGR~d~~I~~~~p~~~ 390 (482)
+++.||.+|++ |++.+++++.|...
T Consensus 132 ~~~~l~~~lr~--ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 132 GPKLLDQNLRT--LVRKHYHIASNKMG 156 (199)
T ss_dssp CGGGBCHHHHT--TEEEEEEEEECSSC
T ss_pred CHHHHhHHHHH--HhheEEEEcCcccC
Confidence 89999999998 99999999886443
No 95
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.77 E-value=8e-08 Score=95.93 Aligned_cols=55 Identities=22% Similarity=0.188 Sum_probs=40.2
Q ss_pred CCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccc
Q 011573 197 ATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELT 268 (482)
Q Consensus 197 ~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~ 268 (482)
..-+.+++-++..+.|.+ +.. +.++++||+|+|||+|++.+++.++.+++.+++.
T Consensus 10 ~~~~~~~gR~~el~~L~~-----l~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-----LRA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-----TCS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CCHHHhcChHHHHHHHHH-----hcC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 344567787665555543 221 4899999999999999999999987766666654
No 96
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.74 E-value=1.5e-08 Score=90.01 Aligned_cols=57 Identities=12% Similarity=0.215 Sum_probs=44.9
Q ss_pred CccccccCCCCchHHHHHHHHHHHh---CCceeecccccccChHHHHHHHHhcCCCeEEEEeCCccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKDNTELRKLLIETSSKSIIVIEDIDCS 297 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~~~~L~~l~~~~~~~sIl~iDdiD~~ 297 (482)
...++|+||+|+|||+|++++++.+ |..++.++...+... .-...+.+|+|||++.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------DAAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------GGGGGCSEEEEESTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------HHHhCCCEEEEeCcccc
Confidence 5679999999999999999999988 666777766655433 11346789999999974
No 97
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.72 E-value=3.3e-08 Score=95.89 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=40.4
Q ss_pred CcCccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHHHHHHhcCCCeEEEEeCCcc
Q 011573 232 AWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIEDIDC 296 (482)
Q Consensus 232 ~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~~~~sIl~iDdiD~ 296 (482)
+++.++|||||||||||+++.|||+.+++. -.++.+.- ...|.....+.|++.||...
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l~-G~vn~~~~------~f~l~~~~~k~i~l~Ee~~~ 159 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY-GCVNWTNE------NFPFNDCVDKMVIWWEEGKM 159 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCE-EECCTTCS------SCTTGGGSSCSEEEECSCCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhccc-ceeecccc------ccccccccccEEEEeccccc
Confidence 556789999999999999999999987552 22232211 11344556677888887765
No 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.63 E-value=1e-06 Score=87.62 Aligned_cols=180 Identities=14% Similarity=0.094 Sum_probs=101.3
Q ss_pred CCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceeeccccccc----
Q 011573 196 PATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVK---- 271 (482)
Q Consensus 196 p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~---- 271 (482)
|..-+.+++-++..+.|.+.+.. | +.++++||+|+|||+|++.+++..+ ++.+++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 34446678877777666544321 2 5899999999999999999999876 4444432210
Q ss_pred -----------------------------------------ChHHHHHHHHhc---CCCeEEEEeCCccccccccccccc
Q 011573 272 -----------------------------------------DNTELRKLLIET---SSKSIIVIEDIDCSLDLTGQRRKK 307 (482)
Q Consensus 272 -----------------------------------------~~~~L~~l~~~~---~~~sIl~iDdiD~~~~~~~~r~~~ 307 (482)
.-..+...+... ..+.+|+|||++.+.+..
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~------ 144 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG------ 144 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT------
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC------
Confidence 011122222211 148999999999863200
Q ss_pred ccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCcCcC---------CHhhhcCCCe
Q 011573 308 KEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYIEKL---------DPALIRKGRM 378 (482)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~~~L---------D~aL~RpGR~ 378 (482)
.......+..|-..++.. .+..+|+|+.....+ ...+. ||.
T Consensus 145 -----------------------~~~~~~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~ 194 (350)
T 2qen_A 145 -----------------------SRGGKELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESPLY--GRI 194 (350)
T ss_dssp -----------------------TTTTHHHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCC
T ss_pred -----------------------ccchhhHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCc
Confidence 000112223233333332 235566665443211 11222 476
Q ss_pred eeEEEccCCCHHHHHHHHHHhccccCCC-cHHHHHHHhcCCCCCHHHHHHH
Q 011573 379 DKHIELSHCSYEAFKVLAKNYLNIESHN-LFDKIGELLGEAKMTPADVAEH 428 (482)
Q Consensus 379 d~~I~~~~p~~~~~~~l~~~~l~~~~~~-~~~~i~~l~~~~~~s~adi~~~ 428 (482)
...+++++.+.++...++...+...... ..+.+..+...+|=.|.-+..+
T Consensus 195 ~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l~~~ 245 (350)
T 2qen_A 195 AGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVF 245 (350)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHHHHHH
T ss_pred cceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 6789999999999999988766432221 2334445555455567666544
No 99
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.58 E-value=3.9e-07 Score=93.49 Aligned_cols=154 Identities=19% Similarity=0.224 Sum_probs=98.9
Q ss_pred ccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhC---CceeecccccccChHH
Q 011573 199 FQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLG---YDLYDLELTAVKDNTE 275 (482)
Q Consensus 199 ~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~---~~i~~l~l~~~~~~~~ 275 (482)
++.+++.....+.+.+.+..... ....+|++|++||||+.+++++..... .+++.++|+.+..+.-
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~-----------~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISC-----------AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTT-----------CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcC-----------CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 34566766667777666655332 246789999999999999999998764 6899999998743332
Q ss_pred HHHHHHhc-----------------CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHH
Q 011573 276 LRKLLIET-----------------SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTL 338 (482)
Q Consensus 276 L~~l~~~~-----------------~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 338 (482)
-..+|... ...++||||||+.+- ....
T Consensus 205 ~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~------------------------------------~~~q 248 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELS------------------------------------LEAQ 248 (387)
T ss_dssp HHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCC------------------------------------HHHH
T ss_pred HHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCC------------------------------------HHHH
Confidence 33444321 245799999999862 2244
Q ss_pred HHHHhhhccc-ccCCC------CceEEEEecCCc-------CcCCHhhhcCCCee-eEEEccCCC--HHHHHHHHHHhcc
Q 011573 339 SGLLNFIDGL-WSACG------GERLIVFTTNYI-------EKLDPALIRKGRMD-KHIELSHCS--YEAFKVLAKNYLN 401 (482)
Q Consensus 339 s~LL~~ldg~-~s~~~------~~~iiI~TTN~~-------~~LD~aL~RpGR~d-~~I~~~~p~--~~~~~~l~~~~l~ 401 (482)
..||..|+.- ...-| -++.+|+|||.. ..+.+.|.- |+. ..|++|+.. .++...|+.+|+.
T Consensus 249 ~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 326 (387)
T 1ny5_A 249 AKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLK 326 (387)
T ss_dssp HHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHH
Confidence 5566666531 11001 134588888863 334555554 443 456666653 4777788888864
No 100
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.52 E-value=8.2e-07 Score=90.49 Aligned_cols=152 Identities=19% Similarity=0.239 Sum_probs=97.9
Q ss_pred ccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCc--eeecccccccChHHHHH
Q 011573 201 TLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYD--LYDLELTAVKDNTELRK 278 (482)
Q Consensus 201 ~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~--i~~l~l~~~~~~~~L~~ 278 (482)
.+++......++...+..... ....+|++|++||||+.+++++....+.. ++.++|..+..+.--..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~-----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAK-----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHT-----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhhc-----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 466766666666555544332 24579999999999999999999887544 99999998855444444
Q ss_pred HHHh-----------------cCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHH
Q 011573 279 LLIE-----------------TSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGL 341 (482)
Q Consensus 279 l~~~-----------------~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 341 (482)
+|.. .....+||||||+.+- ......|
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~------------------------------------~~~Q~~L 242 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELD------------------------------------QRVQAKL 242 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSC------------------------------------HHHHHHH
T ss_pred hcCccccccCCcccccCChHhhcCCCeEEecChhhCC------------------------------------HHHHHHH
Confidence 5432 1245789999999862 2344557
Q ss_pred Hhhhccc-ccCCCC------ceEEEEecCCc-------CcCCHhhhcCCCee-eEEEccCCCH--HHHHHHHHHhcc
Q 011573 342 LNFIDGL-WSACGG------ERLIVFTTNYI-------EKLDPALIRKGRMD-KHIELSHCSY--EAFKVLAKNYLN 401 (482)
Q Consensus 342 L~~ldg~-~s~~~~------~~iiI~TTN~~-------~~LD~aL~RpGR~d-~~I~~~~p~~--~~~~~l~~~~l~ 401 (482)
|..|+.- ...-|+ .+-+|+|||.. ..+.+.|.. |+. ..|++|+... ++...|+.+|+.
T Consensus 243 l~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 317 (368)
T 3dzd_A 243 LRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLK 317 (368)
T ss_dssp HHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHH
Confidence 7777531 111111 23477777742 233445554 444 3577877754 678888888875
No 101
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.40 E-value=3.7e-06 Score=104.45 Aligned_cols=127 Identities=17% Similarity=0.151 Sum_probs=93.5
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeecccccccChHHHHHHHHhcC-CCeEEEEeCCcccccccccccccccccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETS-SKSIIVIEDIDCSLDLTGQRRKKKEKKE 312 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~~~~~~L~~l~~~~~-~~sIl~iDdiD~~~~~~~~r~~~~~~~~ 312 (482)
..|..+.||+|||||.+++++|..+|.+++.++|+.-.+...+.++|..+. ..+..++|||+.+-
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~-------------- 669 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLE-------------- 669 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSC--------------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCC--------------
Confidence 356789999999999999999999999999999999888888888887764 68999999999851
Q ss_pred cCCCCCCcccccccccccccchHHHHHHHHhhh----------------c-ccccCCCCceEEEEecCC----cCcCCHh
Q 011573 313 DEGNDKDPRQKLGKEERETNNSQVTLSGLLNFI----------------D-GLWSACGGERLIVFTTNY----IEKLDPA 371 (482)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l----------------d-g~~s~~~~~~iiI~TTN~----~~~LD~a 371 (482)
..++|.+...| + |-.-.-..+.-+|+|.|. ...|+++
T Consensus 670 ----------------------~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~n 727 (3245)
T 3vkg_A 670 ----------------------ERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDN 727 (3245)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHH
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHH
Confidence 11222221111 1 210001123457888883 4679999
Q ss_pred hhcCCCeeeEEEccCCCHHHHHHHHHHh
Q 011573 372 LIRKGRMDKHIELSHCSYEAFKVLAKNY 399 (482)
Q Consensus 372 L~RpGR~d~~I~~~~p~~~~~~~l~~~~ 399 (482)
|.. || +.|.|.+|+.+...++.-.-
T Consensus 728 Lk~--lF-r~v~m~~Pd~~~i~ei~L~s 752 (3245)
T 3vkg_A 728 LKK--LF-RSMAMIKPDREMIAQVMLYS 752 (3245)
T ss_dssp HHT--TE-EEEECCSCCHHHHHHHHHHT
T ss_pred HHh--hc-EEEEEeCCCHHHHHHHHHHH
Confidence 999 89 57999999999877775443
No 102
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.36 E-value=2e-07 Score=96.86 Aligned_cols=140 Identities=15% Similarity=0.096 Sum_probs=81.8
Q ss_pred cccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHH-HHHhCCceeecccccccChHHHHHH-
Q 011573 202 LAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAM-ANLLGYDLYDLELTAVKDNTELRKL- 279 (482)
Q Consensus 202 l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~ai-A~~l~~~i~~l~l~~~~~~~~L~~l- 279 (482)
|.|.+.+|+.|+-.+..- .+. ..-.-.+||.|+||| ||.+++++ ++.+...+|...... +...|...
T Consensus 215 I~G~e~vK~aLll~L~GG--~~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~s--s~~gLt~s~ 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSC--VGK------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRT--ELTDLTAVL 283 (506)
T ss_dssp STTCHHHHHHHHHHHTTC--CSS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGC--CHHHHSEEE
T ss_pred cCCCHHHHHHHHHHHcCC--ccc------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCC--CccCceEEE
Confidence 678888877775433210 000 001125999999999 99999999 777655554322111 11111100
Q ss_pred -----H------HhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhccc
Q 011573 280 -----L------IETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGL 348 (482)
Q Consensus 280 -----~------~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 348 (482)
+ .......|++||||+.+ ...+++.|+..|+.-
T Consensus 284 r~~tG~~~~~G~l~LAdgGvl~lDEIn~~------------------------------------~~~~qsaLlEaMEe~ 327 (506)
T 3f8t_A 284 KEDRGWALRAGAAVLADGGILAVDHLEGA------------------------------------PEPHRWALMEAMDKG 327 (506)
T ss_dssp EESSSEEEEECHHHHTTTSEEEEECCTTC------------------------------------CHHHHHHHHHHHHHS
T ss_pred EcCCCcccCCCeeEEcCCCeeehHhhhhC------------------------------------CHHHHHHHHHHHhCC
Confidence 0 01234689999999985 234566677776521
Q ss_pred -cc----CCCCceEEEEecCCcC-----------cCCHhhhcCCCeeeEE-EccCCCHH
Q 011573 349 -WS----ACGGERLIVFTTNYIE-----------KLDPALIRKGRMDKHI-ELSHCSYE 390 (482)
Q Consensus 349 -~s----~~~~~~iiI~TTN~~~-----------~LD~aL~RpGR~d~~I-~~~~p~~~ 390 (482)
.+ .-.....||+|+|..+ .|+++++. |||+.+ .+++|+.+
T Consensus 328 ~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e 384 (506)
T 3f8t_A 328 TVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPG 384 (506)
T ss_dssp EEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC-----
T ss_pred cEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChh
Confidence 00 1112357999999876 89999999 999755 46677644
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.29 E-value=5.3e-07 Score=107.91 Aligned_cols=114 Identities=13% Similarity=0.179 Sum_probs=69.2
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccc---------------------cChHHHHHHHHh---
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAV---------------------KDNTELRKLLIE--- 282 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~---------------------~~~~~L~~l~~~--- 282 (482)
|++.+++++||||||||||+||.++|.+. |..+..++.... .....+...+..
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 47888999999999999999999998775 334433333321 122233333332
Q ss_pred cCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEec
Q 011573 283 TSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTT 362 (482)
Q Consensus 283 ~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TT 362 (482)
...+++||||+++.+++....+.. ..+.........++++|..|++.....+ ++|++|
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~-------------------~~~~~~~~~~R~lsqlL~~L~~~~~~~~---v~VI~t 1560 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGE-------------------IGDSHMGLAARMMSQAMRKLAGNLKQSN---TLLIFI 1560 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSC-------------------TTCCCTTHHHHHHHHHHHHHHHHHHTTT---CEEEEE
T ss_pred cCCCCEEEEcChhHhccccccccc-------------------ccccccchHHHHHHHHHHHHHHHHHhCC---cEEEEE
Confidence 368999999999987642111100 0000111134577889999988866433 556666
Q ss_pred CCc
Q 011573 363 NYI 365 (482)
Q Consensus 363 N~~ 365 (482)
|..
T Consensus 1561 Nq~ 1563 (2050)
T 3cmu_A 1561 NQI 1563 (2050)
T ss_dssp ECE
T ss_pred ccc
Confidence 644
No 104
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.19 E-value=1.1e-05 Score=80.82 Aligned_cols=124 Identities=14% Similarity=0.140 Sum_probs=82.1
Q ss_pred cCccccccCCCCchHHHHHHHHHHHh---CC-ceeecccccccChHHHHHHHHhc------CCCeEEEEeCCcc-ccccc
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLL---GY-DLYDLELTAVKDNTELRKLLIET------SSKSIIVIEDIDC-SLDLT 301 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l---~~-~i~~l~l~~~~~~~~L~~l~~~~------~~~sIl~iDdiD~-~~~~~ 301 (482)
....||||||+|+||++.++++++.+ +. +...+.... +..+++++..+ ..+-|++|||+|. +-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~--- 90 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN--- 90 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC---
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC---
Confidence 35689999999999999999998876 33 212222222 23344444332 3578999999987 41
Q ss_pred ccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCCceEEEEecCCc------CcCCHhhhcC
Q 011573 302 GQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGGERLIVFTTNYI------EKLDPALIRK 375 (482)
Q Consensus 302 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~~~iiI~TTN~~------~~LD~aL~Rp 375 (482)
......|+..++.. ++..++|++|+.+ .++.+++..
T Consensus 91 ---------------------------------~~~~~aLl~~le~p----~~~~~~il~~~~~~~~~~~~k~~~~i~s- 132 (343)
T 1jr3_D 91 ---------------------------------AAINEQLLTLTGLL----HDDLLLIVRGNKLSKAQENAAWFTALAN- 132 (343)
T ss_dssp ---------------------------------TTHHHHHHHHHTTC----BTTEEEEEEESCCCTTTTTSHHHHHHTT-
T ss_pred ---------------------------------hHHHHHHHHHHhcC----CCCeEEEEEcCCCChhhHhhHHHHHHHh-
Confidence 11345577777754 2345666655553 356788887
Q ss_pred CCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 376 GRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 376 GR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
|+ ..+++..++..+....++..+..
T Consensus 133 -r~-~~~~~~~l~~~~l~~~l~~~~~~ 157 (343)
T 1jr3_D 133 -RS-VQVTCQTPEQAQLPRWVAARAKQ 157 (343)
T ss_dssp -TC-EEEEECCCCTTHHHHHHHHHHHH
T ss_pred -Cc-eEEEeeCCCHHHHHHHHHHHHHH
Confidence 77 48999999888888777777643
No 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.11 E-value=9.4e-06 Score=73.99 Aligned_cols=27 Identities=30% Similarity=0.610 Sum_probs=23.2
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCce
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDL 262 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i 262 (482)
-+.|.||+|+|||||++.|++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 367899999999999999999986443
No 106
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.83 E-value=0.00014 Score=78.00 Aligned_cols=50 Identities=18% Similarity=0.134 Sum_probs=34.4
Q ss_pred CCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHH
Q 011573 196 PATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMAN 256 (482)
Q Consensus 196 p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~ 256 (482)
|.....++|-+...+.|.+.+.. . ....+-++++||+|+|||+||..+++
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~----~-------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSK----L-------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTT----S-------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCCCeecccHHHHHHHHHHHhc----c-------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 33445678877777766544421 0 11245689999999999999999864
No 107
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.81 E-value=7.5e-05 Score=69.16 Aligned_cols=39 Identities=26% Similarity=0.263 Sum_probs=30.5
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHhCCceeecccc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELT 268 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~ 268 (482)
|++...-++|+||||+|||+|+..+|...+.+++.++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 566666789999999999999999998555565555443
No 108
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.65 E-value=2.1e-05 Score=71.22 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=29.8
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
++.++|.||||||||++++++|..+++++++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457899999999999999999999999998754
No 109
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.60 E-value=2.7e-05 Score=71.78 Aligned_cols=33 Identities=33% Similarity=0.394 Sum_probs=29.6
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
...++|.|||||||||+++++|..+++++++.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 457899999999999999999999999988654
No 110
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.59 E-value=9.9e-05 Score=74.59 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=45.5
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccc---------------------cChHHHHHHHH---h
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAV---------------------KDNTELRKLLI---E 282 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~---------------------~~~~~L~~l~~---~ 282 (482)
|++...-++|+||||+|||+|+..+|..+ +..++.++.... .+...+..++. .
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 56666679999999999999999999875 455544433221 11222222222 2
Q ss_pred cCCCeEEEEeCCcccc
Q 011573 283 TSSKSIIVIEDIDCSL 298 (482)
Q Consensus 283 ~~~~sIl~iDdiD~~~ 298 (482)
...+.+++||.+-.++
T Consensus 137 ~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALV 152 (356)
T ss_dssp TSCCSEEEEECTTTCC
T ss_pred hcCCCeEEehHhhhhc
Confidence 2467899999998875
No 111
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.56 E-value=3e-05 Score=70.39 Aligned_cols=35 Identities=29% Similarity=0.288 Sum_probs=29.9
Q ss_pred CCcCccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 231 RAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 231 ~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
.+.+.-++|.||||+||||+++.+|..+++++++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 34456789999999999999999999999887763
No 112
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.55 E-value=2.9e-05 Score=69.73 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=29.1
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeeccc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLEL 267 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l 267 (482)
+-++|.||||+||||+++++|..++.+++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 468899999999999999999999988876554
No 113
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.55 E-value=5.4e-05 Score=67.24 Aligned_cols=32 Identities=28% Similarity=0.249 Sum_probs=28.5
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeeccc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLEL 267 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l 267 (482)
-++|.||||+||||+++.+|..+++++++.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 47889999999999999999999999887653
No 114
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.53 E-value=0.00062 Score=78.88 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=37.1
Q ss_pred CCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHH
Q 011573 195 HPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 195 ~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.|.....++|-++..++|.+.+... -.-.+-+.|+|++|+|||+||+.+++.
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 4555567888887777776554311 012356889999999999999998875
No 115
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.50 E-value=5.6e-05 Score=75.36 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=25.6
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
|++...-++|+||||+|||+|+..+|...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 66777779999999999999999999875
No 116
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.46 E-value=0.00029 Score=65.50 Aligned_cols=29 Identities=28% Similarity=0.206 Sum_probs=24.3
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
|++...-++|+||||+|||+|++.+|..+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45555668999999999999999999654
No 117
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.45 E-value=5e-05 Score=68.25 Aligned_cols=30 Identities=33% Similarity=0.417 Sum_probs=27.6
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
.++|.|||||||||++++||..+++++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 588999999999999999999999988764
No 118
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.44 E-value=5.7e-05 Score=68.12 Aligned_cols=32 Identities=31% Similarity=0.498 Sum_probs=28.7
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
++.++|.||||+|||++++++|..+++++++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 35689999999999999999999999988764
No 119
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.42 E-value=6.3e-05 Score=67.99 Aligned_cols=31 Identities=42% Similarity=0.615 Sum_probs=28.3
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
-++|.|+||+|||++++.+|..+|+++++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4889999999999999999999999988754
No 120
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.41 E-value=6.4e-05 Score=66.95 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=29.2
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
..++|.|+|||||||+++.+|..+|+++++.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 46899999999999999999999999998753
No 121
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.40 E-value=6.8e-05 Score=68.18 Aligned_cols=33 Identities=30% Similarity=0.529 Sum_probs=28.7
Q ss_pred CccccccCCCCchHHHHHHHHHHH-hCCceeecc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL-LGYDLYDLE 266 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~-l~~~i~~l~ 266 (482)
+..++|.||||||||++++.+|.. +|+++++++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 345899999999999999999999 798888654
No 122
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.39 E-value=7.2e-05 Score=66.76 Aligned_cols=31 Identities=42% Similarity=0.684 Sum_probs=27.5
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
.-+.|.|||||||||+++.+|+.++.++++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id~ 35 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 4588999999999999999999999877653
No 123
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.38 E-value=0.00019 Score=72.11 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=24.8
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHH
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
|++...-++|+||||+|||+|+..+|..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5666667899999999999999999987
No 124
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.32 E-value=8.6e-05 Score=66.16 Aligned_cols=32 Identities=28% Similarity=0.542 Sum_probs=28.4
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
+-++|.|+||+|||++++.+|..+++++++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 35889999999999999999999999888643
No 125
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.32 E-value=7e-05 Score=58.50 Aligned_cols=70 Identities=10% Similarity=-0.087 Sum_probs=48.4
Q ss_pred cCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHHHHHhcccC----CCCCHHHHHHHHHHHHHHHHH
Q 011573 385 SHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADVAEHLMPKT----FPADVEFSLRSLNQALELAKE 454 (482)
Q Consensus 385 ~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi~~~l~~~~----~~~~~~~~~~~l~~al~~~~~ 454 (482)
|+|+.++|.+|++.++.........++..++. ..|||+|||..+|..++ ......+..+++..++++..+
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 68999999999999998654332334555665 45999999998876522 122334566777777776554
No 126
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.31 E-value=0.00038 Score=70.66 Aligned_cols=69 Identities=16% Similarity=0.268 Sum_probs=46.6
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccc---------------------cChHHHHHHHHh---
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAV---------------------KDNTELRKLLIE--- 282 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~---------------------~~~~~L~~l~~~--- 282 (482)
|++..+-++|+||||+|||+|+..+|..+ +.++..+++..- .+...+...+..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56677779999999999999999988764 455555443321 112233333332
Q ss_pred cCCCeEEEEeCCcccc
Q 011573 283 TSSKSIIVIEDIDCSL 298 (482)
Q Consensus 283 ~~~~sIl~iDdiD~~~ 298 (482)
...+.+||||.+..+.
T Consensus 150 ~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALT 165 (366)
T ss_dssp TTCCSEEEEECTTTCC
T ss_pred cCCCCEEEEeChHHhc
Confidence 2467899999999875
No 127
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.31 E-value=0.00012 Score=67.24 Aligned_cols=31 Identities=39% Similarity=0.580 Sum_probs=28.1
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
.-++|.||||+||||+++.||..++++++++
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3588999999999999999999999988775
No 128
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.29 E-value=0.00011 Score=70.63 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=28.4
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeeccc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLEL 267 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l 267 (482)
-++|.||||||||+++++||..++++++..|-
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 46899999999999999999999998887654
No 129
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.28 E-value=0.0001 Score=66.67 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=27.7
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
.-++|.|+|||||||+++.+|..+++++++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 4588999999999999999999999887654
No 130
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.27 E-value=0.00011 Score=65.10 Aligned_cols=29 Identities=28% Similarity=0.419 Sum_probs=26.2
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
-++|.||||+||||+++.+ ..+|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 9999998764
No 131
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.26 E-value=0.00011 Score=66.44 Aligned_cols=31 Identities=32% Similarity=0.672 Sum_probs=27.6
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
.-++|.|||||||||+++.+|..+++++++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 3578999999999999999999999887765
No 132
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.24 E-value=0.00013 Score=64.74 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=27.6
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
-++|.|+||+|||++++.+|..+++++++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 3789999999999999999999999888643
No 133
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.23 E-value=0.00044 Score=83.16 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=50.5
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccccC------------------------hHHHHHHHHh
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVKD------------------------NTELRKLLIE 282 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~~------------------------~~~L~~l~~~ 282 (482)
|++..+.+||+||||||||+|+.+++.+. |.+.+.+++..... ...+...+..
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 57888889999999999999999987654 56666555554311 1223344555
Q ss_pred cCCCeEEEEeCCcccc
Q 011573 283 TSSKSIIVIEDIDCSL 298 (482)
Q Consensus 283 ~~~~sIl~iDdiD~~~ 298 (482)
...+.+|+||++..+.
T Consensus 1157 ~~~~dlvVIDsl~~L~ 1172 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALT 1172 (2050)
T ss_dssp HTCCSEEEESCGGGCC
T ss_pred hCCCCEEEECCccccc
Confidence 6789999999999874
No 134
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.23 E-value=0.00016 Score=66.06 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=21.6
Q ss_pred ccccccCCCCchHHHHHHHHHHHh---CCcee
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL---GYDLY 263 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~ 263 (482)
.-++++||||+|||+++..++..+ +..++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~ 35 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVA 35 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 357899999999999986666543 55443
No 135
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.22 E-value=0.00017 Score=66.34 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=28.2
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
+-++|.||||+||||+++.|+..+|+.+++.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 46889999999999999999999998877643
No 136
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.21 E-value=0.00013 Score=66.25 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=29.0
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
+.-++|.|||||||||+++.+|..+++++++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 346889999999999999999999999887653
No 137
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.21 E-value=0.00013 Score=65.86 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=28.7
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
++-++|.|||||||||+++.+|..+++++++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 45688999999999999999999999888765
No 138
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.20 E-value=0.0001 Score=65.99 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=25.0
Q ss_pred ccccccCCCCchHHHHHHHHHH-HhCCceee
Q 011573 235 RGYLLYGPPGTGKSTMIAAMAN-LLGYDLYD 264 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~-~l~~~i~~ 264 (482)
.-++|.||||+||||+++.++. .+++.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 4588999999999999999999 56665554
No 139
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.20 E-value=0.00012 Score=66.25 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=26.1
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC-----Cceee
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG-----YDLYD 264 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~-----~~i~~ 264 (482)
.-++|.||||+||||+++.||..++ ++++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 4588999999999999999999998 66654
No 140
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.19 E-value=0.00025 Score=69.42 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=26.7
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeeccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLEL 267 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l 267 (482)
+.-++|.||||+||||++++++..++...+.++.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 4568899999999999999999998433444443
No 141
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.18 E-value=0.00013 Score=68.11 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=28.0
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
.-++|.||||+||||+++.||..+++++++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4588999999999999999999999988765
No 142
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.18 E-value=0.00016 Score=67.20 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=26.8
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
++|.||||+||||+++.+|..+++++++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 67899999999999999999999988765
No 143
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.18 E-value=0.00014 Score=66.22 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=28.5
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
+.-++|.||||+||||+++.+|..+++++++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 35688999999999999999999999887765
No 144
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.16 E-value=0.00042 Score=69.88 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=45.3
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccc---------------------cChHHHHHHHH---h
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAV---------------------KDNTELRKLLI---E 282 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~---------------------~~~~~L~~l~~---~ 282 (482)
|++..+-++|+||||+|||+|+..+|..+ +..+..++.... .+...+..++. .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56666779999999999999999998654 444444433221 11222222222 2
Q ss_pred cCCCeEEEEeCCcccc
Q 011573 283 TSSKSIIVIEDIDCSL 298 (482)
Q Consensus 283 ~~~~sIl~iDdiD~~~ 298 (482)
...+.+||||++..++
T Consensus 137 ~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 137 SGALDIIVIDSVAALV 152 (349)
T ss_dssp TTCCSEEEEECGGGCC
T ss_pred cCCCCEEEEcChHhhc
Confidence 2458999999999875
No 145
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.16 E-value=0.00018 Score=67.09 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=27.9
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
.-++|.||||+||||+++.||..+++++++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4588999999999999999999999887765
No 146
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.15 E-value=0.00017 Score=66.83 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=26.7
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
++|.||||+||||+++.+|..+++++++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 67899999999999999999999988765
No 147
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.15 E-value=0.00015 Score=68.12 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=28.5
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
+.-++|.||||+||||+++.||..+++++++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 35689999999999999999999999887764
No 148
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.14 E-value=0.00051 Score=69.19 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=26.4
Q ss_pred hCCCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 229 IGRAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 229 ~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.|++...-+.|+||||+|||+|+..+|...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 366777779999999999999999999887
No 149
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.14 E-value=0.00026 Score=70.27 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=24.6
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHH
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
|++...-++|+||||+|||+++..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5666677999999999999999999875
No 150
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.11 E-value=0.00027 Score=71.15 Aligned_cols=50 Identities=18% Similarity=0.336 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 206 PAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 206 ~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
+.+.+.++..+..++.. | ....++|.||||+|||+++++||+.++++++.
T Consensus 5 ~~L~~~il~~l~~~i~~-------g--~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIED-------N--YRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp HHHHHHHHHHHHHTTTT-------C--SCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-------C--CeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 45666666666554432 1 12468999999999999999999999988854
No 151
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.10 E-value=0.00023 Score=63.69 Aligned_cols=31 Identities=32% Similarity=0.467 Sum_probs=27.0
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
.-++|.||||+||||+++.+++.+|..+++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 4578999999999999999999998777654
No 152
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.10 E-value=0.00018 Score=67.28 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=28.1
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
+.-++|.||||+||||+++.||..+++.++++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35688999999999999999999999877664
No 153
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.09 E-value=0.00042 Score=70.07 Aligned_cols=69 Identities=16% Similarity=0.262 Sum_probs=47.6
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecccccc---------------------cChHHHHHHHHh---
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAV---------------------KDNTELRKLLIE--- 282 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~---------------------~~~~~L~~l~~~--- 282 (482)
|++..+-++|+||||+|||+|+..+|..+ +.+++.+++... .+...+..++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 57777789999999999999999998764 555655554211 122333333332
Q ss_pred cCCCeEEEEeCCcccc
Q 011573 283 TSSKSIIVIEDIDCSL 298 (482)
Q Consensus 283 ~~~~sIl~iDdiD~~~ 298 (482)
...+.+||||.+..+.
T Consensus 139 ~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 139 SGAVDVIVVDSVAALT 154 (356)
T ss_dssp HTCCSEEEEECGGGCC
T ss_pred ccCCCEEEEcCHHHhc
Confidence 3567899999999875
No 154
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.09 E-value=0.00021 Score=65.62 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=28.2
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
+-++|.|||||||||+++.+|..+|+++++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 35789999999999999999999998877654
No 155
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.07 E-value=0.00023 Score=67.11 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=28.0
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
..++|.|||||||||+++.||..+++++++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4589999999999999999999999887765
No 156
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.07 E-value=0.00084 Score=66.49 Aligned_cols=68 Identities=16% Similarity=0.109 Sum_probs=41.8
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh-----CCceeecccccc---------------------cChHHH-HHHHH-
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL-----GYDLYDLELTAV---------------------KDNTEL-RKLLI- 281 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l-----~~~i~~l~l~~~---------------------~~~~~L-~~l~~- 281 (482)
|++.. -++++||||+|||+|+..++..+ +..+..++...- .+...+ ..+..
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 56655 47899999999999987765543 344444432211 112222 22222
Q ss_pred ----hcCCCeEEEEeCCcccc
Q 011573 282 ----ETSSKSIIVIEDIDCSL 298 (482)
Q Consensus 282 ----~~~~~sIl~iDdiD~~~ 298 (482)
....+.+||||-|-.++
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCB
T ss_pred HHHhhccCceEEEEecccccc
Confidence 22468999999999975
No 157
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.05 E-value=0.0002 Score=64.38 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=22.7
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCcee
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLY 263 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~ 263 (482)
.-++|.|+||+||||+++.+|..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45889999999999999999999999877
No 158
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.02 E-value=0.011 Score=62.91 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=32.7
Q ss_pred ccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHH
Q 011573 203 AMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMAN 256 (482)
Q Consensus 203 ~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~ 256 (482)
+|-++.+++|.+.+..- +-+..+-+.++|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 37777788777666321 112246688999999999999999997
No 159
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.01 E-value=0.00021 Score=64.81 Aligned_cols=33 Identities=42% Similarity=0.480 Sum_probs=26.1
Q ss_pred CCcCccccccCCCCchHHHHHHHHHHHhCCcee
Q 011573 231 RAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLY 263 (482)
Q Consensus 231 ~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~ 263 (482)
++.+.-+.|.||||+||||++++||+.++...+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i 38 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKV 38 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeE
Confidence 344456889999999999999999987655433
No 160
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.99 E-value=0.00031 Score=66.89 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=28.7
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
+.-++|.||||+||||+++.|+..+++++++.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 45689999999999999999999999888765
No 161
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=96.98 E-value=0.00012 Score=58.38 Aligned_cols=72 Identities=13% Similarity=-0.051 Sum_probs=48.3
Q ss_pred EccCCCHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHHHHHhcccC----CCCCHHHHHHHHHHHHHHHHH
Q 011573 383 ELSHCSYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADVAEHLMPKT----FPADVEFSLRSLNQALELAKE 454 (482)
Q Consensus 383 ~~~~p~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi~~~l~~~~----~~~~~~~~~~~l~~al~~~~~ 454 (482)
+-++|+.++|.+|++.++.........++..+++ +.|||+|||.++|..++ ......+..+++.+++++.++
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p 83 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 83 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc
Confidence 4578999999999999997654322223455555 34999999998887532 112334556677777776543
No 162
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.98 E-value=0.00038 Score=63.96 Aligned_cols=31 Identities=26% Similarity=0.518 Sum_probs=26.7
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
+.-+.|.||||+||||++++||+.+|..+++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 3458899999999999999999999876654
No 163
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.98 E-value=0.00041 Score=66.39 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=27.8
Q ss_pred cCccccccCCCCchHHHHHHHHHHHhCCceeeccc
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLEL 267 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l 267 (482)
.+.-++|.||||+||||+++.++..++...+.++.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~ 65 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDG 65 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEec
Confidence 34568899999999999999999999754444433
No 164
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.98 E-value=0.00027 Score=65.70 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=26.6
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
++|.||||+||||+++.||..+++++++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 68999999999999999999999888765
No 165
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.96 E-value=0.0019 Score=60.83 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=26.9
Q ss_pred ccccccCCCCchHHHHHHHHHHHh---CCceeeccc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLEL 267 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l 267 (482)
-.+++.|+||||||+++-++|..+ |+++..+++
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 458899999999999999999876 777664444
No 166
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.94 E-value=0.00042 Score=62.32 Aligned_cols=32 Identities=34% Similarity=0.523 Sum_probs=28.0
Q ss_pred ccccccCCCCchHHHHHHHHHHHh---CCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~ 266 (482)
.-+.|.|++|+||||+++.++..+ |++++.++
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 457789999999999999999998 88887664
No 167
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.93 E-value=0.00041 Score=65.16 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=27.4
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
++-++|.||||+||+|.|+.||..+|++.+.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 4668889999999999999999999987664
No 168
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.91 E-value=0.00042 Score=62.64 Aligned_cols=30 Identities=27% Similarity=0.353 Sum_probs=27.1
Q ss_pred ccccCCCCchHHHHHHHHHHHh---CCceeecc
Q 011573 237 YLLYGPPGTGKSTMIAAMANLL---GYDLYDLE 266 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~ 266 (482)
+.|.|+||+||||+++.++..+ |+++++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6789999999999999999998 88888764
No 169
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.91 E-value=0.00037 Score=65.36 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=26.3
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
++|.||||+||||+++.||..++++++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 68999999999999999999999877654
No 170
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.87 E-value=0.00039 Score=69.17 Aligned_cols=33 Identities=27% Similarity=0.542 Sum_probs=29.4
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
++.++|.||+|||||+++.++|..++..++++|
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~D 37 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVD 37 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEecc
Confidence 356899999999999999999999998888764
No 171
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.84 E-value=0.00037 Score=63.91 Aligned_cols=31 Identities=32% Similarity=0.356 Sum_probs=27.0
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeeccc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLEL 267 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l 267 (482)
-+.|.||+||||||+++.+|+ +|+++++.+-
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEccH
Confidence 367899999999999999999 9988887643
No 172
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.84 E-value=0.00049 Score=64.08 Aligned_cols=28 Identities=32% Similarity=0.602 Sum_probs=25.4
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
++|.||||+||+|.++.||..+|++.+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 6788999999999999999999987664
No 173
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.81 E-value=0.00047 Score=66.22 Aligned_cols=33 Identities=39% Similarity=0.633 Sum_probs=29.6
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
...+.|.||||+||||+++.||..+|+++++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 356899999999999999999999999988754
No 174
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.81 E-value=0.0014 Score=70.49 Aligned_cols=31 Identities=45% Similarity=0.546 Sum_probs=25.4
Q ss_pred ccccccCCCCchHHHHHHHHHHHh---CCceeec
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL---GYDLYDL 265 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l 265 (482)
+-+++.||||||||+++.+++..+ +..+..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 568899999999999999998865 5565544
No 175
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.81 E-value=0.00053 Score=62.49 Aligned_cols=28 Identities=36% Similarity=0.803 Sum_probs=25.3
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
+.|.|+|||||||+++.||..++..++.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 6789999999999999999999987654
No 176
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.80 E-value=0.00055 Score=63.77 Aligned_cols=30 Identities=40% Similarity=0.607 Sum_probs=26.9
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
.-+.|.|||||||||+++.+|+.+|+++++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 357899999999999999999999988765
No 177
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.80 E-value=0.0015 Score=66.98 Aligned_cols=28 Identities=29% Similarity=0.224 Sum_probs=23.2
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHH
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
|++...-++|+||||||||+|+..+|-.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 5666666899999999999999977643
No 178
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.80 E-value=0.00054 Score=62.71 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=28.2
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
-+.|.||||+|||++++.+|..+|+++++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5788999999999999999999999988754
No 179
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.80 E-value=0.0003 Score=63.46 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=22.1
Q ss_pred cccccCCCCchHHHHHHHHHHHhC
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
-++|.||||+||||+++.||..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999886
No 180
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.78 E-value=0.0012 Score=68.85 Aligned_cols=54 Identities=24% Similarity=0.348 Sum_probs=35.8
Q ss_pred eccCCCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 192 VFEHPATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 192 ~~~~p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
+...|.+|+.| .+++++.+ ..+..++... .+.++|.||||||||+++.+++..+
T Consensus 16 ~~~~p~~~~~L--n~~Q~~av-~~~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 16 PRGSHMTFDDL--TEGQKNAF-NIVMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -----CCSSCC--CHHHHHHH-HHHHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCCCccccC--CHHHHHHH-HHHHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44567778775 55655555 4444555431 2378999999999999999999887
No 181
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.78 E-value=0.00064 Score=64.55 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=26.9
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
+.-+.|.||||+||||++++||..+|+..++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3568899999999999999999999876554
No 182
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.77 E-value=0.0077 Score=68.42 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=31.1
Q ss_pred ccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHH
Q 011573 203 AMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 203 ~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
+|-++..++|.+.+.. . ...+-+.++||+|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~---~---------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE---L---------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHH---C---------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhc---c---------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 6667777776655431 0 11467889999999999999999863
No 183
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.75 E-value=0.0025 Score=58.76 Aligned_cols=109 Identities=12% Similarity=0.176 Sum_probs=68.4
Q ss_pred cccccCCCCchHHHHHHHHHHHh---CCceeecccccc--c-Ch-----------------------------HHHHHHH
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAV--K-DN-----------------------------TELRKLL 280 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~--~-~~-----------------------------~~L~~l~ 280 (482)
-+++|+++|+|||+.|-++|-.. |+.++.+.+..- . ++ ......+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 47789999999999999998765 777766633210 0 00 1111112
Q ss_pred ----Hhc--CCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccccCCCC
Q 011573 281 ----IET--SSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLWSACGG 354 (482)
Q Consensus 281 ----~~~--~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~s~~~~ 354 (482)
... ...-+|+|||+-..+.. .-.....++..|..- .+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~---------------------------------g~l~~~ev~~~l~~R----p~ 152 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAY---------------------------------DYLPLEEVISALNAR----PG 152 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHT---------------------------------TSSCHHHHHHHHHTS----CT
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccC---------------------------------CCCCHHHHHHHHHhC----cC
Confidence 222 34679999998764321 111223456665542 34
Q ss_pred ceEEEEecCCcCcCCHhhhcCCCeeeEEEccC
Q 011573 355 ERLIVFTTNYIEKLDPALIRKGRMDKHIELSH 386 (482)
Q Consensus 355 ~~iiI~TTN~~~~LD~aL~RpGR~d~~I~~~~ 386 (482)
..=||+|+|.+ +++|+. .-|.+-+|..
T Consensus 153 ~~~vIlTGr~a---p~~l~e--~AD~VTem~~ 179 (196)
T 1g5t_A 153 HQTVIITGRGC---HRDILD--LADTVSELRP 179 (196)
T ss_dssp TCEEEEECSSC---CHHHHH--HCSEEEECCC
T ss_pred CCEEEEECCCC---cHHHHH--hCcceeeecc
Confidence 56799999885 789998 8898887764
No 184
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.74 E-value=0.00051 Score=63.14 Aligned_cols=30 Identities=33% Similarity=0.433 Sum_probs=26.1
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
-+.|.|||||||||+++.+|+ +|+++++.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 467899999999999999998 898887654
No 185
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.72 E-value=0.00072 Score=61.31 Aligned_cols=29 Identities=34% Similarity=0.400 Sum_probs=25.4
Q ss_pred ccccCCCCchHHHHHHHHHHHh---CCceeec
Q 011573 237 YLLYGPPGTGKSTMIAAMANLL---GYDLYDL 265 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l 265 (482)
+.|.|||||||||+++.++..+ |++++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 5789999999999999999999 9988754
No 186
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.72 E-value=0.00065 Score=62.47 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=28.3
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
.-+.|.|++||||||+++.+|..+|+++++.|
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 34678999999999999999999999988754
No 187
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.71 E-value=0.00061 Score=62.25 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=28.0
Q ss_pred ccccccCCCCchHHHHHHHHHHHh-CCceeeccc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL-GYDLYDLEL 267 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l-~~~i~~l~l 267 (482)
.-+.|.||||+||||+++.+|..+ |++++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 457899999999999999999999 677776543
No 188
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.70 E-value=0.00079 Score=63.93 Aligned_cols=31 Identities=35% Similarity=0.472 Sum_probs=27.8
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
.-+.|.||||+|||++++.||..+++++++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 4688999999999999999999999888764
No 189
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.66 E-value=0.0013 Score=61.59 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=24.7
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHH
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
|++...-++|+||||+|||+|+..+|..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5666667899999999999999999985
No 190
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.63 E-value=0.00079 Score=64.72 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=26.5
Q ss_pred ccccccCCCCchHHHHHHHHHHH---hCCceeec
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL---LGYDLYDL 265 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~---l~~~i~~l 265 (482)
.-++|.|+||+||||+++.+|.. +|++++.+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~ 38 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL 38 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 35889999999999999999998 68887733
No 191
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.61 E-value=0.00045 Score=63.56 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=25.9
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
.-+.|.|+|||||||+++.+|..++.+.+.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 4578999999999999999999987655444
No 192
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.57 E-value=0.0012 Score=60.51 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=23.0
Q ss_pred CccccccCCCCchHHHHHHHHHHHhC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
+.-+.|.||+|+||||++++||+.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45578999999999999999999983
No 193
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.57 E-value=0.0022 Score=76.33 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=50.7
Q ss_pred hCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeeccccccc---------------------ChHHHHHHHHhc-
Q 011573 229 IGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELTAVK---------------------DNTELRKLLIET- 283 (482)
Q Consensus 229 ~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~~~~---------------------~~~~L~~l~~~~- 283 (482)
-|++..+.++|+||||||||+|+.++|... |..++.+++.... +...+.+++...
T Consensus 29 GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~ 108 (1706)
T 3cmw_A 29 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 108 (1706)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHH
Confidence 378888899999999999999999988653 5666666554321 233344444433
Q ss_pred --CCCeEEEEeCCcccc
Q 011573 284 --SSKSIIVIEDIDCSL 298 (482)
Q Consensus 284 --~~~sIl~iDdiD~~~ 298 (482)
..+.+||||.+..++
T Consensus 109 ~~~~~~LVVIDSLt~L~ 125 (1706)
T 3cmw_A 109 RSGAVDVIVVDSVAALT 125 (1706)
T ss_dssp HHTCCSEEEESCSTTCC
T ss_pred hccCCCEEEEcchhhhc
Confidence 578999999999975
No 194
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.55 E-value=0.0011 Score=61.47 Aligned_cols=32 Identities=31% Similarity=0.336 Sum_probs=28.6
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
.-+.|.||||||||++++.+|..+|+++++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 45789999999999999999999999988754
No 195
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.54 E-value=0.00094 Score=61.17 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=24.1
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYD 261 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~ 261 (482)
.-++|.||||+||||+++.||..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 357899999999999999999999763
No 196
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.49 E-value=0.00098 Score=60.70 Aligned_cols=31 Identities=35% Similarity=0.494 Sum_probs=27.5
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
.-+.|.|+||||||++++.+|.. |+++++.+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 45789999999999999999998 98888755
No 197
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.48 E-value=0.0026 Score=69.25 Aligned_cols=56 Identities=27% Similarity=0.460 Sum_probs=35.6
Q ss_pred CCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecc
Q 011573 196 PATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLE 266 (482)
Q Consensus 196 p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~ 266 (482)
|..|-+-.+++.++++|...+. . +.-.|++||||||||+++..+..++ +..+..+.
T Consensus 182 ~~~~~~~~LN~~Q~~AV~~al~----~-----------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a 240 (646)
T 4b3f_X 182 PLTFFNTCLDTSQKEAVLFALS----Q-----------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 240 (646)
T ss_dssp CCCCSSTTCCHHHHHHHHHHHH----C-----------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccccCCCCCHHHHHHHHHHhc----C-----------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEc
Confidence 3344344578888888755442 1 1246899999999998776665544 45554443
No 198
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.45 E-value=0.0012 Score=61.30 Aligned_cols=31 Identities=39% Similarity=0.506 Sum_probs=27.1
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
.-+.|.|++|+||||+++.+|. +|+++++.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 4578999999999999999998 898888754
No 199
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.45 E-value=0.0021 Score=59.57 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=25.0
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
|++...-+.|.||+|+|||+|++.||+.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56666668999999999999999999854
No 200
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.42 E-value=0.0015 Score=61.64 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=27.1
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
-+.|.||||||||++++.+|..+|+++++.
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 477899999999999999999999988764
No 201
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.40 E-value=0.0011 Score=64.70 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=26.5
Q ss_pred ccccccCCCCchHHHHHHHHHHHh-CCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL-GYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l-~~~i~~l~ 266 (482)
.-++|.||||+||||+++.++..+ ++.+++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 458899999999999999999974 77666543
No 202
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.38 E-value=0.00081 Score=61.86 Aligned_cols=29 Identities=24% Similarity=0.086 Sum_probs=24.2
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCcee
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLY 263 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~ 263 (482)
.-++|.|+||+||||+++.+|..++...+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~ 38 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGH 38 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 45789999999999999999998754433
No 203
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.33 E-value=0.0016 Score=59.84 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=24.5
Q ss_pred CcCccccccCCCCchHHHHHHHHHHHhC
Q 011573 232 AWKRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 232 ~~~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
+.++-++|.||||+||||+++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4456788999999999999999999885
No 204
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.33 E-value=0.0049 Score=63.92 Aligned_cols=101 Identities=19% Similarity=0.230 Sum_probs=65.6
Q ss_pred cChHHH-HHHHHhcCCCeEEEEeCCcccccccccccccccccccCCCCCCcccccccccccccchHHHHHHHHhhhcccc
Q 011573 271 KDNTEL-RKLLIETSSKSIIVIEDIDCSLDLTGQRRKKKEKKEDEGNDKDPRQKLGKEERETNNSQVTLSGLLNFIDGLW 349 (482)
Q Consensus 271 ~~~~~L-~~l~~~~~~~sIl~iDdiD~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~ 349 (482)
.+...+ +..+..+....||++||||.+.. ... ....+.........||..|||-.
T Consensus 235 ~~~~~~~~~ai~~ae~~~il~~DEidki~~----~~~--------------------~~~~D~s~egvq~aLL~~le~~~ 290 (444)
T 1g41_A 235 INPEELKQKAIDAVEQNGIVFIDEIDKICK----KGE--------------------YSGADVSREGVQRDLLPLVEGST 290 (444)
T ss_dssp CCHHHHHHHHHHHHHHHCEEEEETGGGGSC----CSS--------------------CSSSHHHHHHHHHHHHHHHHCCE
T ss_pred cCHHHHHHHHHHHhccCCeeeHHHHHHHhh----ccC--------------------CCCCCchHHHHHHHHHHHhcccc
Confidence 333444 34445555778999999999741 100 00011112235567999999842
Q ss_pred cC------CCCceEEEEec----CCcCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHH
Q 011573 350 SA------CGGERLIVFTT----NYIEKLDPALIRKGRMDKHIELSHCSYEAFKVLAK 397 (482)
Q Consensus 350 s~------~~~~~iiI~TT----N~~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~ 397 (482)
.. ...++++|+|. +.+..+-|.|+. ||+.+|+|+.++.+++..|+.
T Consensus 291 ~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 291 VSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp EEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred cccccceecCCcEEEEeccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 11 12457888886 244446688998 999999999999999999984
No 205
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.33 E-value=0.002 Score=61.63 Aligned_cols=30 Identities=37% Similarity=0.577 Sum_probs=26.9
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
.-+.|.||+|+||||+++.||..+|+.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 357799999999999999999999988775
No 206
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.32 E-value=0.0017 Score=61.88 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=25.7
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCcee
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLY 263 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~ 263 (482)
.-+.|.|||||||||+++.||..++++++
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~ 51 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEV 51 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcc
Confidence 45889999999999999999999998743
No 207
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.32 E-value=0.0017 Score=58.80 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=21.9
Q ss_pred cccccCCCCchHHHHHHHHHHHhCC
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGY 260 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~ 260 (482)
-+.|.||||+||||+++.|++.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4678999999999999999987654
No 208
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.32 E-value=0.0092 Score=62.06 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=44.8
Q ss_pred HHHHHHHhhhcccccCCCCceEEEEecCC-------------cCcCCHhhhcCCCeeeEEEccCCCHHHHHHHHHHhccc
Q 011573 336 VTLSGLLNFIDGLWSACGGERLIVFTTNY-------------IEKLDPALIRKGRMDKHIELSHCSYEAFKVLAKNYLNI 402 (482)
Q Consensus 336 ~~ls~LL~~ldg~~s~~~~~~iiI~TTN~-------------~~~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~~l~~ 402 (482)
...+.||..|+.- ... ++|++||. ++.|+|.++. ||.. +.|++++.++...+++..+..
T Consensus 310 ~a~~aLlk~lEe~----~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~ 381 (456)
T 2c9o_A 310 ECFTYLHRALESS----IAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQT 381 (456)
T ss_dssp HHHHHHHHHTTST----TCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc----CCC-EEEEecCCccccccccccccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHHH
Confidence 3667788888754 233 55555533 7889999999 9975 799999999999999887643
No 209
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.31 E-value=0.0051 Score=57.86 Aligned_cols=62 Identities=13% Similarity=0.261 Sum_probs=38.5
Q ss_pred cccccCCCCchHHHHHHHHHHHh---CCceeecc--c---c--cc-------------cChHHHHHHHHhc---CCCeEE
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL---GYDLYDLE--L---T--AV-------------KDNTELRKLLIET---SSKSII 289 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~--l---~--~~-------------~~~~~L~~l~~~~---~~~sIl 289 (482)
-++++||||+|||+++..+|..+ +..++.+. . + .+ .....+...+.+. ..+.+|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 36778999999999998887765 44554441 1 0 11 1122344433332 246799
Q ss_pred EEeCCccc
Q 011573 290 VIEDIDCS 297 (482)
Q Consensus 290 ~iDdiD~~ 297 (482)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999864
No 210
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.31 E-value=0.023 Score=60.50 Aligned_cols=41 Identities=7% Similarity=0.059 Sum_probs=34.6
Q ss_pred ceEEEEecCCcC--cCCHhhhcCCCeeeEEEccCCCHHHHHHHHH
Q 011573 355 ERLIVFTTNYIE--KLDPALIRKGRMDKHIELSHCSYEAFKVLAK 397 (482)
Q Consensus 355 ~~iiI~TTN~~~--~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~ 397 (482)
++-+|++|.++. .|+..++. -|...|.|...+..+-+.++.
T Consensus 378 GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 378 GIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp TEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHHS
T ss_pred CeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhcC
Confidence 488999999987 79988887 788899999999888877763
No 211
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.31 E-value=0.0011 Score=60.91 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=25.9
Q ss_pred ccccccCCCCchHHHHHHHHHHHh-CCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL-GYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l-~~~i~~l~ 266 (482)
.-+.|.||||+||||+++.|++.+ ++.++..+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 347789999999999999999988 66555443
No 212
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.28 E-value=0.0018 Score=58.47 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=22.7
Q ss_pred CccccccCCCCchHHHHHHHHHHHhC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.+-+.|.||+|+|||||+++|++.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34578999999999999999999864
No 213
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.22 E-value=0.0013 Score=65.68 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=30.2
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeeccccc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTA 269 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~ 269 (482)
+-++|.||+|||||+|+..||..++..+++.|--.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 35889999999999999999999998888766543
No 214
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.22 E-value=0.0016 Score=67.10 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=28.0
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
+.-++|.||||+||||+++.++..+++.+++.+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D 290 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRD 290 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEccc
Confidence 455889999999999999999999987766543
No 215
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.21 E-value=0.0047 Score=56.65 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=25.8
Q ss_pred ccccccCCCCchHHHHHHHHHHHh---CCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~ 266 (482)
.-+.|.||+|+||||+++.+++.+ +.+++.++
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 447789999999999999999976 56665543
No 216
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.15 E-value=0.0023 Score=63.17 Aligned_cols=33 Identities=21% Similarity=0.558 Sum_probs=28.3
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
++-+++.||+|+|||+|+..+|..++..++..|
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~D 42 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVD 42 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecc
Confidence 456889999999999999999999987776654
No 217
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.14 E-value=0.0019 Score=58.94 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.4
Q ss_pred CccccccCCCCchHHHHHHHHHHHh
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
+.-+.|.||||+||||+++.|++.+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4457899999999999999999987
No 218
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.13 E-value=0.013 Score=50.53 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.2
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
-.+++.|+||+|||||+.++.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999864
No 219
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.12 E-value=0.0017 Score=60.01 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=27.1
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
.++++|.||+|+|||+++.++|...+ .++..|
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 47899999999999999999998876 665443
No 220
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.12 E-value=0.0023 Score=59.16 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=27.7
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceee
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYD 264 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~ 264 (482)
.-+.|.||+|||||++++.+|..||+++++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 357889999999999999999999999996
No 221
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.11 E-value=0.0023 Score=59.91 Aligned_cols=37 Identities=27% Similarity=0.211 Sum_probs=27.6
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLE 266 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~ 266 (482)
|++...-++|+||||+|||+++..+|..+ +..++.++
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 56666678999999999999988887643 44444443
No 222
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.10 E-value=0.0021 Score=62.60 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=26.6
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
.-+.|.|+|||||||+++.++ .+|+++++.+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 357899999999999999999 6898877653
No 223
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.08 E-value=0.003 Score=57.74 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=22.9
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGY 260 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~ 260 (482)
|.++|.||+|+|||||+++|.....-
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 56899999999999999999887643
No 224
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.07 E-value=0.0023 Score=64.08 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=27.1
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
.-+++.||+|+|||+++..||..++..++..|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46789999999999999999999986655543
No 225
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.06 E-value=0.0029 Score=58.48 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=23.0
Q ss_pred CccccccCCCCchHHHHHHHHHHHhC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
+.-++|.|+||+||||+++.++..++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45578899999999999999999875
No 226
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.05 E-value=0.0028 Score=57.18 Aligned_cols=26 Identities=38% Similarity=0.557 Sum_probs=22.9
Q ss_pred CccccccCCCCchHHHHHHHHHHHhC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
+.-++|.|+||+||||+++.+|..++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999884
No 227
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.04 E-value=0.029 Score=59.16 Aligned_cols=42 Identities=10% Similarity=0.076 Sum_probs=34.2
Q ss_pred ceEEEEecCCcC--cCCHhhhcCCCeeeEEEccCCCHHHHHHHHHH
Q 011573 355 ERLIVFTTNYIE--KLDPALIRKGRMDKHIELSHCSYEAFKVLAKN 398 (482)
Q Consensus 355 ~~iiI~TTN~~~--~LD~aL~RpGR~d~~I~~~~p~~~~~~~l~~~ 398 (482)
++-+|++|.++. .|+..++. -+...|.|...+..+.+.++..
T Consensus 332 GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 332 GIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp TEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHSS
T ss_pred CcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcCC
Confidence 367888888886 68888887 7888999999999988877653
No 228
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.03 E-value=0.0038 Score=57.59 Aligned_cols=26 Identities=38% Similarity=0.588 Sum_probs=22.6
Q ss_pred CccccccCCCCchHHHHHHHHHHHhC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
+.-+.|.||+|+|||||+++|++.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34467899999999999999999885
No 229
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.99 E-value=0.0024 Score=60.04 Aligned_cols=26 Identities=38% Similarity=0.435 Sum_probs=22.7
Q ss_pred CCCcCccccccCCCCchHHHHHHHHH
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMA 255 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA 255 (482)
|++...-+.|.||+|+|||+|+++++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45556678999999999999999998
No 230
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.98 E-value=0.0026 Score=58.79 Aligned_cols=27 Identities=30% Similarity=0.274 Sum_probs=23.3
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGY 260 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~ 260 (482)
++-+.|.||+|+||||+++.|+..+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 345788999999999999999998753
No 231
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.93 E-value=0.0036 Score=58.65 Aligned_cols=38 Identities=32% Similarity=0.258 Sum_probs=28.1
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHH----hCCceeeccc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANL----LGYDLYDLEL 267 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~----l~~~i~~l~l 267 (482)
|++...-++++|+||+|||+++..+|.. .+.+++.+++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 5666667999999999999999877643 2556655443
No 232
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=95.88 E-value=0.0038 Score=48.97 Aligned_cols=70 Identities=6% Similarity=0.014 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHhccccCCCcHHHHHHHhcC-CCCCHHHHHHHhcccC----CCCCHHHHHHHHHHHHHHHHHHHh
Q 011573 388 SYEAFKVLAKNYLNIESHNLFDKIGELLGE-AKMTPADVAEHLMPKT----FPADVEFSLRSLNQALELAKEEAR 457 (482)
Q Consensus 388 ~~~~~~~l~~~~l~~~~~~~~~~i~~l~~~-~~~s~adi~~~l~~~~----~~~~~~~~~~~l~~al~~~~~~~~ 457 (482)
+.++|.+|++.++.........++..+++. .|||+|||..+|..+. ......+..+++..++++.++...
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence 678999999999976554333345666664 4999999998876532 223455677888888888766543
No 233
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.87 E-value=0.0037 Score=59.10 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=26.3
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
-+=|.||||+||||+++.||..++++.+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 345789999999999999999999888764
No 234
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.81 E-value=0.0036 Score=61.88 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=26.7
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~ 266 (482)
+-+++.||+|+|||+|+..+|..++..++..+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 35778999999999999999999987665443
No 235
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.80 E-value=0.0039 Score=56.79 Aligned_cols=25 Identities=24% Similarity=0.639 Sum_probs=22.0
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.-+.|.||+|+||||+++.|++.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4477899999999999999999863
No 236
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.77 E-value=0.0039 Score=57.22 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=22.6
Q ss_pred CccccccCCCCchHHHHHHHHHHHhC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
++-+.|.||+|+|||||++.|++.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46688999999999999999998763
No 237
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.73 E-value=0.0029 Score=61.14 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=24.0
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
|++...-++|+||||+|||+|+..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44555668999999999999999998754
No 238
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.72 E-value=0.004 Score=56.36 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.1
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
+-+.|.||+|+||||+++.|++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4577899999999999999999874
No 239
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.72 E-value=0.0079 Score=56.82 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=25.1
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
.++++||+|+|||.++.+++..++..++.+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv 139 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIV 139 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 489999999999999999988886665544
No 240
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.71 E-value=0.005 Score=60.75 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=28.5
Q ss_pred hCCCcCccccccCCCCchHHHHHHHHHHHhCCce
Q 011573 229 IGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDL 262 (482)
Q Consensus 229 ~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l~~~i 262 (482)
+.++...-+.|.||+|+|||||+++|++.+.-.+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 4566677799999999999999999999985444
No 241
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.70 E-value=0.013 Score=57.39 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=39.2
Q ss_pred CccccccCCCCchHHHHHHHHHHHh----CCceeecccccc----------------------cChHHHHHHHHhcCCCe
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL----GYDLYDLELTAV----------------------KDNTELRKLLIETSSKS 287 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l----~~~i~~l~l~~~----------------------~~~~~L~~l~~~~~~~s 287 (482)
++-++|.||+|+||||++..||..+ |..+..+++... .+...++..+.....+-
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 4568899999999999999999876 445544433221 11233444555556678
Q ss_pred EEEEe
Q 011573 288 IIVIE 292 (482)
Q Consensus 288 Il~iD 292 (482)
+|+||
T Consensus 185 lvIiD 189 (296)
T 2px0_A 185 HVFVD 189 (296)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88888
No 242
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.70 E-value=0.0054 Score=60.37 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhC--CCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 206 PAEKKEIIDDLIAFSKSEDFYARIG--RAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 206 ~~~k~~i~~~l~~fl~~~~~y~~~g--~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
+.+++.+.+.+...+........+. +..+.-+.|.||+|+||||+++.||+.+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456666666666664321001122 2333457899999999999999999987
No 243
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.68 E-value=0.0039 Score=57.31 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.6
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.-+.|.||+|+||||+++.|++.++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3477899999999999999999987
No 244
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.62 E-value=0.0096 Score=51.76 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.0
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
-.+++.|++|+|||||+.++.+.-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998753
No 245
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.60 E-value=0.0067 Score=57.13 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=23.9
Q ss_pred cccccCCCCchHHHHHHHHHHHhC--Ccee
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLG--YDLY 263 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~--~~i~ 263 (482)
-+.|.||||+||||+++.|+..++ .+++
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~ 57 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVKDYDVI 57 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCce
Confidence 467889999999999999999996 4444
No 246
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.57 E-value=0.019 Score=49.28 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.0
Q ss_pred cccccCCCCchHHHHHHHHHHH
Q 011573 236 GYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.+++.|++|+|||||+.++++.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 247
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.57 E-value=0.025 Score=48.69 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.5
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..+++.|++|+|||+|+.++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 248
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.57 E-value=0.0065 Score=53.92 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=23.4
Q ss_pred CcCccccccCCCCchHHHHHHHHHHHh
Q 011573 232 AWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 232 ~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
+...-+.|.||.|+|||||+++|++.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 334458899999999999999999998
No 249
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.54 E-value=0.0063 Score=62.92 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecc
Q 011573 206 PAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLE 266 (482)
Q Consensus 206 ~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~ 266 (482)
+.+.+.+.+.+...+.....-.......++-+++.||||+||||++..+|..+ |..+..++
T Consensus 69 ~~v~~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 69 EWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34455555666655543100000001124568899999999999999999877 55554443
No 250
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.53 E-value=0.0047 Score=60.13 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=25.5
Q ss_pred hCCCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 229 IGRAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 229 ~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.|++...-++|.||||+|||+|++.||..+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 356666678999999999999999999876
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.51 E-value=0.0056 Score=57.06 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=22.4
Q ss_pred CccccccCCCCchHHHHHHHHHHHh
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
..-+.|.||+|+|||||++.|++.+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4457899999999999999999977
No 252
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.49 E-value=0.011 Score=51.16 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.6
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
-.+++.|++|+|||||+.++.+.-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998643
No 253
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.47 E-value=0.0055 Score=57.62 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=28.0
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
.-+.+.|++|||||++++.+|..+|+++|+-
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~ 45 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYDD 45 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEcH
Confidence 3577899999999999999999999999863
No 254
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.46 E-value=0.03 Score=49.29 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.7
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..+++.|++|+|||+|+.++++.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46899999999999999999864
No 255
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.43 E-value=0.02 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=20.8
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
--+++.|++|+|||||+.++.+.-
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358899999999999999998643
No 256
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.43 E-value=0.0077 Score=65.06 Aligned_cols=32 Identities=34% Similarity=0.523 Sum_probs=28.8
Q ss_pred ccccccCCCCchHHHHHHHHHHHh---CCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~ 266 (482)
.-++|.|+||+||||+++++|..+ |++++.++
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 458899999999999999999999 99988775
No 257
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.42 E-value=0.0052 Score=62.82 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=27.1
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCceeec
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLYDL 265 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~~l 265 (482)
+.-+++.||+|+|||+|+..+|..++..++..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 34578899999999999999999998766654
No 258
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.40 E-value=0.032 Score=49.62 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.1
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.-++|.|+||+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 458999999999999999888754
No 259
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.40 E-value=0.016 Score=58.40 Aligned_cols=23 Identities=52% Similarity=0.748 Sum_probs=21.3
Q ss_pred cccccCCCCchHHHHHHHHHHHh
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l 258 (482)
-+++.||+|+||||+.+++++.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999999887
No 260
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.40 E-value=0.012 Score=53.94 Aligned_cols=25 Identities=16% Similarity=0.470 Sum_probs=22.1
Q ss_pred CccccccCCCCchHHHHHHHHHHHh
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
...++|.|+||+|||+|+.++++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999999864
No 261
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.39 E-value=0.0073 Score=55.67 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=22.6
Q ss_pred CccccccCCCCchHHHHHHHHHHHhC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
++-+.|.||+|+|||||+++|++.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34578899999999999999998865
No 262
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.39 E-value=0.022 Score=50.54 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.1
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
...++|.|++|+|||+|+.++.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999863
No 263
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.37 E-value=0.036 Score=49.92 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.5
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-++|.|++|+|||+|+.++.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 264
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.36 E-value=0.0067 Score=55.81 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.7
Q ss_pred CccccccCCCCchHHHHHHHHHHHhC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
..-+.|.||+|+|||||+++|++.+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34477999999999999999999874
No 265
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.36 E-value=0.0072 Score=62.58 Aligned_cols=60 Identities=25% Similarity=0.318 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecc
Q 011573 206 PAEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLE 266 (482)
Q Consensus 206 ~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~ 266 (482)
..+++.+.+.+...+..+...... ...++-+++.||||+||||++..+|..+ |..+..++
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 445666666666666531100000 0124568899999999999999999877 55554444
No 266
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.32 E-value=0.01 Score=61.44 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=26.4
Q ss_pred CccccccCCCCchHHHHHHHHHHHh---CCceeeccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLEL 267 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l 267 (482)
++.+++.||||+||||++.++|..+ |..+..+++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3568899999999999999999876 345544443
No 267
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.31 E-value=0.021 Score=49.38 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=19.0
Q ss_pred ccccCCCCchHHHHHHHHHHH
Q 011573 237 YLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~ 257 (482)
+++.|++|+|||+|+.++.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 688999999999999999764
No 268
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.30 E-value=0.0075 Score=60.85 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHhC--CCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 206 PAEKKEIIDDLIAFSKSEDFYARIG--RAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 206 ~~~k~~i~~~l~~fl~~~~~y~~~g--~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
+.+++.+.+.+...+........+. +..+.-+.|.||.|+||||+++.||+.+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3455566666665554321101122 2334458899999999999999999987
No 269
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.29 E-value=0.013 Score=50.89 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=18.7
Q ss_pred cccccCCCCchHHHHHHHHHH
Q 011573 236 GYLLYGPPGTGKSTMIAAMAN 256 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~ 256 (482)
-++|.|+||+|||+|+.++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999864
No 270
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=95.28 E-value=0.0026 Score=50.78 Aligned_cols=67 Identities=7% Similarity=-0.134 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHhccccCCCcHHHHHHHhc-CCCCCHHHHHHHhcccC----CCCCHHHHHHHHHHHHHHHHH
Q 011573 388 SYEAFKVLAKNYLNIESHNLFDKIGELLG-EAKMTPADVAEHLMPKT----FPADVEFSLRSLNQALELAKE 454 (482)
Q Consensus 388 ~~~~~~~l~~~~l~~~~~~~~~~i~~l~~-~~~~s~adi~~~l~~~~----~~~~~~~~~~~l~~al~~~~~ 454 (482)
+.++|.+|++.++...+.....++..++. +.|||||||..+|..++ ......+..+++..|+++...
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhc
Confidence 45789999999987655433334556666 45999999998887532 111223556777777776554
No 271
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.27 E-value=0.017 Score=51.70 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.7
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..++|.|++|+|||+|+.++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 272
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.26 E-value=0.017 Score=50.05 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.4
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
-.+++.|++|+|||||+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999863
No 273
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.24 E-value=0.01 Score=58.69 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=28.7
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLE 266 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~ 266 (482)
|+++..-++|.|+||+|||+|+..+|... +.++..++
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 66666779999999999999999998664 34554443
No 274
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.21 E-value=0.021 Score=49.91 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.1
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
--+++.|+||+|||||+.++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 45899999999999999999753
No 275
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.18 E-value=0.0035 Score=57.50 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=21.3
Q ss_pred ccccCCCCchHHHHHHHHHHHhC
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
+.|.||||+||||+++.|+..++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999985
No 276
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.15 E-value=0.024 Score=50.58 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.9
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
-.+++.|++|+|||||+.++++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998753
No 277
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.13 E-value=0.016 Score=53.20 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=24.4
Q ss_pred ccccccCCCCchHH-HHHHHHHHHh--CCceeec
Q 011573 235 RGYLLYGPPGTGKS-TMIAAMANLL--GYDLYDL 265 (482)
Q Consensus 235 rg~LL~GPpGtGKT-sl~~aiA~~l--~~~i~~l 265 (482)
+-+++|||.|+||| .|++++.++. +..++.+
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~ 54 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVI 54 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 34788999999999 9999998865 5555554
No 278
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.12 E-value=0.0081 Score=56.84 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=23.4
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCce
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDL 262 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i 262 (482)
-+-|.||+|+||||+++.|++.+|...
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~~ 53 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQNE 53 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchhc
Confidence 367899999999999999999987543
No 279
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.10 E-value=0.0081 Score=59.26 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecc
Q 011573 208 EKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLE 266 (482)
Q Consensus 208 ~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~ 266 (482)
+++.+.+.+...+.....+ ......+.-+++.||+|+||||++..+|..+ +..+..++
T Consensus 79 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 5556666666655432100 0112234458899999999999999999877 44454443
No 280
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.09 E-value=0.0091 Score=55.89 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=23.6
Q ss_pred CcCccccccCCCCchHHHHHHHHHHHhC
Q 011573 232 AWKRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 232 ~~~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
+...-+.|.||+|+|||||+++|++.+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3445678999999999999999999875
No 281
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.07 E-value=0.01 Score=57.09 Aligned_cols=25 Identities=44% Similarity=0.650 Sum_probs=22.2
Q ss_pred CccccccCCCCchHHHHHHHHHHHh
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
..-++|.||+|+||||++++|++.+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhC
Confidence 4458899999999999999999876
No 282
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.06 E-value=0.019 Score=51.39 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.7
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-++|.|++|+|||+|+.++.+.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 283
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.05 E-value=0.021 Score=50.22 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.6
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-+++.|++|+|||+|+.++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 284
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.04 E-value=0.059 Score=60.78 Aligned_cols=64 Identities=19% Similarity=0.369 Sum_probs=39.4
Q ss_pred cCccccccCCCCchHHHHHHHHHHH-----hCCce---------e-----ecccccc-----c----ChHHHHHHHHhcC
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANL-----LGYDL---------Y-----DLELTAV-----K----DNTELRKLLIETS 284 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~-----l~~~i---------~-----~l~l~~~-----~----~~~~L~~l~~~~~ 284 (482)
..+-++|.||.|+||||+.+.+|.. .|..+ + .+.+.+. . .-.++..++..+.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~ 751 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKAT 751 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhcc
Confidence 3456889999999999999998753 23211 0 0111100 0 0123445555678
Q ss_pred CCeEEEEeCCcc
Q 011573 285 SKSIIVIEDIDC 296 (482)
Q Consensus 285 ~~sIl~iDdiD~ 296 (482)
.|++|++||.-.
T Consensus 752 ~p~LlLLDEP~~ 763 (918)
T 3thx_B 752 SQSLVILDELGR 763 (918)
T ss_dssp TTCEEEEESTTT
T ss_pred CCCEEEEeCCCC
Confidence 999999999776
No 285
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.03 E-value=0.0089 Score=54.63 Aligned_cols=23 Identities=43% Similarity=0.819 Sum_probs=21.1
Q ss_pred cccccCCCCchHHHHHHHHHHHh
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l 258 (482)
-+.|.||+|+||||+++.||+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 36789999999999999999987
No 286
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.017 Score=51.59 Aligned_cols=27 Identities=15% Similarity=0.500 Sum_probs=22.8
Q ss_pred CcCccccccCCCCchHHHHHHHHHHHh
Q 011573 232 AWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 232 ~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
....-+++.|++|+|||||+.++++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578999999999999999998753
No 287
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.01 E-value=0.0084 Score=62.85 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.6
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.-++|.||+|+||||+++.||+.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHh
Confidence 347899999999999999999987
No 288
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.99 E-value=0.03 Score=49.83 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.7
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-++|.|+||+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 289
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.97 E-value=0.027 Score=49.29 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.6
Q ss_pred CccccccCCCCchHHHHHHHHHHHh
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
...+++.|++|+|||||+.++.+.-
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998643
No 290
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.95 E-value=0.015 Score=62.90 Aligned_cols=24 Identities=42% Similarity=0.612 Sum_probs=20.4
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
..+|+.||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999988887665
No 291
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.94 E-value=0.02 Score=56.91 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhCHH---HH-HHhCCCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 207 AEKKEIIDDLIAFSKSED---FY-ARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 207 ~~k~~i~~~l~~fl~~~~---~y-~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.+++.+.+.+...+.... .. .....+.+.-+.|.||+|+||||+++.||+.+
T Consensus 98 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 98 IIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp HHHHHHHHHHHHHSCCSSCCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555556665554321 00 01122334558899999999999999999987
No 292
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.94 E-value=0.042 Score=49.35 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.4
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
...+++.|++|+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999874
No 293
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.93 E-value=0.018 Score=49.99 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=19.4
Q ss_pred cccccCCCCchHHHHHHHHHH
Q 011573 236 GYLLYGPPGTGKSTMIAAMAN 256 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~ 256 (482)
-+++.|++|+|||||+.++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999999986
No 294
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.91 E-value=0.0089 Score=53.37 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=17.2
Q ss_pred CccccccCCCCchHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAA 253 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~a 253 (482)
..-+.|.||+|+|||||+++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34478999999999999994
No 295
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.90 E-value=0.013 Score=59.34 Aligned_cols=27 Identities=41% Similarity=0.551 Sum_probs=23.3
Q ss_pred CcCccccccCCCCchHHHHHHHHHHHh
Q 011573 232 AWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 232 ~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
+...-++|.||+|+||||++++|++.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444558899999999999999999876
No 296
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.88 E-value=0.016 Score=50.04 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.9
Q ss_pred cccccCCCCchHHHHHHHHHHH
Q 011573 236 GYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.+++.|+||+|||||+.++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999874
No 297
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.86 E-value=0.039 Score=61.24 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=19.0
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..+++.||+|+|||+++..++..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999987777544
No 298
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.82 E-value=0.013 Score=58.11 Aligned_cols=36 Identities=36% Similarity=0.502 Sum_probs=27.6
Q ss_pred cCccccccCCCCchHHHHHHHHHHHh---CCceeecccc
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELT 268 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~ 268 (482)
.++-+++.||+|+||||++..||..+ +..+..+++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34568899999999999999999877 4555554443
No 299
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.80 E-value=0.026 Score=66.36 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=23.5
Q ss_pred CcCccccccCCCCchHHHHHHHHHHHhC
Q 011573 232 AWKRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 232 ~~~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
++..-+-+.||.|+|||||+++|.+.+.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 4445588999999999999999998773
No 300
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.78 E-value=0.023 Score=50.87 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.1
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
--++|.|++|+|||+|+.++.+.-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 358999999999999999998754
No 301
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.73 E-value=0.017 Score=60.07 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=28.8
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh----CCceeecc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL----GYDLYDLE 266 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----~~~i~~l~ 266 (482)
|+++..-++|.||||+|||+|+..+|..+ |.++..++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 56666668999999999999999998754 44555543
No 302
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.73 E-value=0.014 Score=52.68 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.1
Q ss_pred CccccccCCCCchHHHHHHHHHHHh
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
..-+.|.||+|+||||++.+++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4568899999999999999999875
No 303
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.68 E-value=0.03 Score=57.59 Aligned_cols=49 Identities=31% Similarity=0.450 Sum_probs=34.5
Q ss_pred CCCccccccChHHHHHHHHHHHHHhhCHHHHHHhCCCcCcc-ccccCCCCchHHHHHHHHHHHhC
Q 011573 196 PATFQTLAMEPAEKKEIIDDLIAFSKSEDFYARIGRAWKRG-YLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 196 p~~~~~l~~~~~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg-~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
+.++++|....+.+..+ .++ +.. +.+ +++.||+|+||||+.++|++.+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L-~~l---~~~-----------~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNF-RRL---IKR-----------PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHHH-HHH---HTS-----------SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHHH-HHH---HHh-----------cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 35678887776554333 333 111 334 78999999999999999999884
No 304
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.67 E-value=0.0057 Score=59.83 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=23.6
Q ss_pred cccccCCCCchHHHHHHHHHHHhC---Cceeecccccc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLG---YDLYDLELTAV 270 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~---~~i~~l~l~~~ 270 (482)
-+.|.||+|+||||+++.++..++ ..+..+++..+
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 467899999999999999999876 33444444444
No 305
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.66 E-value=0.0095 Score=54.10 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=27.7
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCceeecccccc
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAV 270 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l~~~ 270 (482)
+|++|++|+|||++|..+|.. +.+++.+.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 688999999999999999988 878777665443
No 306
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.66 E-value=0.11 Score=57.80 Aligned_cols=63 Identities=25% Similarity=0.383 Sum_probs=39.9
Q ss_pred CccccccCCCCchHHHHHHHHHHHh-----CCcee----ecc-----cccccC--------------hHHHHHHHHhcCC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL-----GYDLY----DLE-----LTAVKD--------------NTELRKLLIETSS 285 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l-----~~~i~----~l~-----l~~~~~--------------~~~L~~l~~~~~~ 285 (482)
.+-++|.||.|+||||+.+.+|... |..+. .+. +..+.. -.++..++..+..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~ 686 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATE 686 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCT
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccC
Confidence 4568899999999999999998753 32110 000 001100 1234455566789
Q ss_pred CeEEEEeCCcc
Q 011573 286 KSIIVIEDIDC 296 (482)
Q Consensus 286 ~sIl~iDdiD~ 296 (482)
|++|++||.-.
T Consensus 687 psLlLLDEp~~ 697 (800)
T 1wb9_A 687 YSLVLMDEIGR 697 (800)
T ss_dssp TEEEEEESCCC
T ss_pred CCEEEEECCCC
Confidence 99999999755
No 307
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.63 E-value=0.014 Score=61.84 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=23.7
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGY 260 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~ 260 (482)
+.-++|.|+||+|||++++.+|.+++.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 346889999999999999999999843
No 308
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.62 E-value=0.0076 Score=56.36 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=15.2
Q ss_pred ccccccCCCCchHHHHHHHHH-HHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMA-NLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA-~~l~ 259 (482)
.-+.|.||+|+||||+++.|+ +.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 447789999999999999999 8763
No 309
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.60 E-value=0.017 Score=56.40 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=23.1
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGY 260 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~ 260 (482)
+.-+.+.||+|+||||+++.|+..++.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345678999999999999999998853
No 310
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.59 E-value=0.017 Score=59.75 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=28.9
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh----CCceeeccc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL----GYDLYDLEL 267 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----~~~i~~l~l 267 (482)
|+++..-++|.||||+|||+|+..+|... |.++..+++
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 56666668999999999999999988754 455555433
No 311
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.54 E-value=0.012 Score=53.12 Aligned_cols=29 Identities=34% Similarity=0.488 Sum_probs=24.1
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCcee
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLY 263 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~ 263 (482)
.+|+||.||+|+|||+++.++... |..++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 579999999999999999998873 54443
No 312
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.54 E-value=0.033 Score=49.16 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.6
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-++|.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 313
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.51 E-value=0.018 Score=53.62 Aligned_cols=29 Identities=34% Similarity=0.312 Sum_probs=23.8
Q ss_pred cccccCCCCchHHHHHHHHHHHhC---Cceee
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLG---YDLYD 264 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~---~~i~~ 264 (482)
-+.|.||+|+||||+++.++..++ ++++.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~ 39 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQL 39 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCccc
Confidence 467889999999999999999884 55543
No 314
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.45 E-value=0.053 Score=49.50 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.3
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-++|.|++|+|||+|+.++.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999853
No 315
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.43 E-value=0.027 Score=50.12 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.9
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..-+++.|+||+|||+|+.++++.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999999864
No 316
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.39 E-value=0.018 Score=53.60 Aligned_cols=31 Identities=35% Similarity=0.437 Sum_probs=28.0
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCceeeccc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLYDLEL 267 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~~l~l 267 (482)
.+-|.|.+|||||++++.++. +|+++++.|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 466899999999999999998 9999998775
No 317
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.35 E-value=0.012 Score=62.12 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.4
Q ss_pred CccccccCCCCchHHHHHHHHHHHhC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
+.++++.||+|+||||+++++++.+.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45799999999999999999999874
No 318
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.35 E-value=0.026 Score=62.91 Aligned_cols=24 Identities=42% Similarity=0.612 Sum_probs=20.3
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
+-+++.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999988887665
No 319
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.34 E-value=0.025 Score=50.80 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=25.5
Q ss_pred ccccccCCCCchHHHHHHHHHHHh---CCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~ 266 (482)
+-+.|.|++|+|||+++..++..+ |+.+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 357899999999999999999886 45555444
No 320
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.33 E-value=0.02 Score=56.27 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=22.2
Q ss_pred CccccccCCCCchHHHHHHHHHHHh
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
+.-+.|.||+|+||||+++.||+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3457889999999999999999987
No 321
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.31 E-value=0.016 Score=51.81 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.0
Q ss_pred cccccCCCCchHHHHHHHHHHHhCC
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGY 260 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~ 260 (482)
-.+|+||.|+|||+++.||+..++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4578999999999999999988763
No 322
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.30 E-value=0.034 Score=50.17 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.0
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..-+++.|++|+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999999753
No 323
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.29 E-value=0.03 Score=50.21 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.6
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..+++.|++|+|||+|+.++.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 324
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.25 E-value=0.017 Score=56.86 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.8
Q ss_pred cccccCCCCchHHHHHHHHHHHhC
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
-+-|.||+|+||||+++.|++.++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999876
No 325
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.22 E-value=0.018 Score=61.77 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=27.2
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC----Cceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG----YDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~----~~i~~l~ 266 (482)
.-++|.|+||+||||++++++..++ .+++.++
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 3478899999999999999999986 6666665
No 326
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.22 E-value=0.024 Score=50.72 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.3
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..+++.|++|+|||+|+.++.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 34899999999999999999864
No 327
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.21 E-value=0.04 Score=49.69 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.9
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
...++|.|++|+|||+|+.++.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999764
No 328
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.21 E-value=0.051 Score=49.23 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.3
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-++|.|++|+|||+|+.++.+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 45899999999999999999753
No 329
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.19 E-value=0.11 Score=58.69 Aligned_cols=63 Identities=24% Similarity=0.321 Sum_probs=39.3
Q ss_pred CccccccCCCCchHHHHHHHHHHH-----hCCcee-------ecc--cccccC--------------hHHHHHHHHhcCC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL-----LGYDLY-------DLE--LTAVKD--------------NTELRKLLIETSS 285 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~-----l~~~i~-------~l~--l~~~~~--------------~~~L~~l~~~~~~ 285 (482)
.+-++|.||.|+||||+.+.+|.- .|..+- .++ +..+.. -.++..++..+..
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~ 741 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATK 741 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccC
Confidence 456889999999999999998532 232110 000 011110 1234555656789
Q ss_pred CeEEEEeCCcc
Q 011573 286 KSIIVIEDIDC 296 (482)
Q Consensus 286 ~sIl~iDdiD~ 296 (482)
|++|++||.-.
T Consensus 742 ~sLlLLDEp~~ 752 (934)
T 3thx_A 742 DSLIIIDELGR 752 (934)
T ss_dssp TCEEEEESCSC
T ss_pred CcEEEEeCCCC
Confidence 99999999765
No 330
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.15 E-value=0.012 Score=52.63 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=20.9
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
--+++.|++|+|||||+.++.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999997654
No 331
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.15 E-value=0.033 Score=50.76 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.8
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..-+++.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999874
No 332
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.13 E-value=0.023 Score=56.77 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=28.7
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeecc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLE 266 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~ 266 (482)
|+.+..-++|.|+||+|||+|+..+|..+ +.++..++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 56666669999999999999999998764 55655443
No 333
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.11 E-value=0.052 Score=53.80 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=21.7
Q ss_pred cccccCCCCchHHHHHHHHHHHhC
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
-+-|.||+||||||+++.|+..++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999999886
No 334
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.10 E-value=0.051 Score=56.53 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.5
Q ss_pred cccccCCCCchHHHHHHHHHHHh
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.++|+||||+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 48899999999999999998765
No 335
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.09 E-value=0.014 Score=61.04 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=23.7
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGY 260 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~ 260 (482)
+.-++|.|.||+|||++++.+|..++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 346899999999999999999998753
No 336
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.07 E-value=0.022 Score=56.25 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=21.9
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.-+.|.||+|+|||||++.|++.+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 3467899999999999999999874
No 337
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.05 E-value=0.024 Score=57.08 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=24.4
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYD 261 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~ 261 (482)
..-+.|.||+|+|||||++.||+.+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568899999999999999999998654
No 338
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.05 E-value=0.0088 Score=57.21 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=24.1
Q ss_pred ccccccCCCCchHHHHHHHHHHHh-CCcee
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL-GYDLY 263 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l-~~~i~ 263 (482)
.-+.|.|++|+||||+++.||..+ +..++
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 347789999999999999999998 54443
No 339
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.04 E-value=0.02 Score=53.78 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.5
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
+-+.|.|++|+||||+++.+|..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3478899999999999999999994
No 340
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.02 E-value=0.062 Score=48.29 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.1
Q ss_pred CccccccCCCCchHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMAN 256 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~ 256 (482)
..-+++.|+||+|||+|+.++.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999864
No 341
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.02 E-value=0.02 Score=49.62 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.0
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-.+++.|++|+|||||+.++.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999874
No 342
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.99 E-value=0.038 Score=49.42 Aligned_cols=23 Identities=22% Similarity=0.470 Sum_probs=20.5
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..+++.|++|+|||||+.++.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 46899999999999999999873
No 343
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.99 E-value=0.022 Score=53.65 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=17.9
Q ss_pred cccccCCCCchHHHHHHHHHHHh
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l 258 (482)
-+.|.||+|+||||+++.++..+
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36778999999999999999988
No 344
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.99 E-value=0.02 Score=51.79 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.0
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.-+.|.||+|+|||||++++++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 357899999999999999999853
No 345
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.97 E-value=0.023 Score=59.87 Aligned_cols=26 Identities=8% Similarity=-0.014 Sum_probs=23.7
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGY 260 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~ 260 (482)
..++|.|++||||||++++||..|+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999985
No 346
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.95 E-value=0.022 Score=48.95 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.8
Q ss_pred cccccCCCCchHHHHHHHHHHH
Q 011573 236 GYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.+++.|++|+|||||+.++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 347
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.95 E-value=0.024 Score=59.74 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=27.1
Q ss_pred CccccccCCCCchHHHHHHHHHHHh---CCceeeccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLEL 267 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l 267 (482)
++-++|.|+||+||||++.+||..+ |..+..+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4568899999999999999999876 566655554
No 348
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.86 E-value=0.029 Score=59.02 Aligned_cols=37 Identities=16% Similarity=0.004 Sum_probs=28.3
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh----CCceeecc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL----GYDLYDLE 266 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l----~~~i~~l~ 266 (482)
|+++..-++|.||||+|||+|+..+|... |.++..++
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 55556668999999999999999998765 44555443
No 349
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.85 E-value=0.032 Score=50.09 Aligned_cols=22 Identities=18% Similarity=0.534 Sum_probs=19.6
Q ss_pred ccccccCCCCchHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMAN 256 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~ 256 (482)
..+++.|++|+|||||+.++.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999974
No 350
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.84 E-value=0.028 Score=58.33 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=29.0
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh---CCceeeccc
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLEL 267 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l 267 (482)
|+++..-+++.|+||+|||+|+..+|... |.++..+++
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 56665669999999999999999988765 555554433
No 351
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.84 E-value=0.042 Score=64.66 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=22.6
Q ss_pred CcCccccccCCCCchHHHHHHHHHHHh
Q 011573 232 AWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 232 ~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
++..-+-+.||+|+|||||+++|.+.+
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 344457899999999999999998865
No 352
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.80 E-value=0.02 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.7
Q ss_pred cccccCCCCchHHHHHHHHHHHh
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l 258 (482)
-+.|.||+|+|||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 353
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.66 E-value=0.038 Score=50.42 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.6
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..++|.|++|+|||+|+.++.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 354
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.65 E-value=0.022 Score=53.66 Aligned_cols=23 Identities=43% Similarity=0.463 Sum_probs=20.8
Q ss_pred ccccCCCCchHHHHHHHHHHHhC
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
+.|.||.|+|||+|.++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 46789999999999999999885
No 355
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.61 E-value=0.028 Score=60.69 Aligned_cols=25 Identities=40% Similarity=0.638 Sum_probs=21.2
Q ss_pred CccccccCCCCchHHHHHHHHHHHh
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.+-+++.||||||||+++.++...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3578999999999999998887655
No 356
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.59 E-value=0.032 Score=57.65 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=28.4
Q ss_pred cCccccccCCCCchHHHHHHHHHHHh----CCceeecccc
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLL----GYDLYDLELT 268 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l----~~~i~~l~l~ 268 (482)
.++.+++.|++|+||||++..+|..+ |..+..+++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 35678889999999999999999776 5666655554
No 357
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.58 E-value=0.019 Score=54.30 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.0
Q ss_pred CccccccCCCCchHHHHHHHHHHHh
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
..-+.|.||.|+|||||+++|++.+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999999875
No 358
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.56 E-value=0.023 Score=53.93 Aligned_cols=25 Identities=32% Similarity=0.620 Sum_probs=21.9
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.-+.|.||.|+|||||+++||+.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4577899999999999999998763
No 359
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.56 E-value=0.1 Score=57.81 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.6
Q ss_pred CccccccCCCCchHHHHHHHHHHHh
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
..-++|.||.|+||||+.+.+|+..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 3568899999999999999998753
No 360
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.53 E-value=0.02 Score=54.14 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=22.0
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.-+.|.||.|+|||||+++|++.+.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4578999999999999999998764
No 361
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.52 E-value=0.02 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.7
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-+.|.||.|+|||||+++|++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45778999999999999999986
No 362
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.48 E-value=0.054 Score=55.79 Aligned_cols=59 Identities=19% Similarity=0.106 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhCCCcCccccccCCCCchHHHHHHHHHHHh---CCceeeccc
Q 011573 207 AEKKEIIDDLIAFSKSEDFYARIGRAWKRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLEL 267 (482)
Q Consensus 207 ~~k~~i~~~l~~fl~~~~~y~~~g~~~~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l 267 (482)
.+++.+.+.+...+.... ..+....++.+++.||+|+||||++..+|..+ +..+..+++
T Consensus 73 ~~~~~v~~~L~~~~~~~~--~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 73 VILATVYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp HHHHHHHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCc--ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 344555555555443211 11111234567788999999999999999887 444444433
No 363
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.44 E-value=0.023 Score=49.75 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.7
Q ss_pred cccccCCCCchHHHHHHHHHHH
Q 011573 236 GYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~ 257 (482)
-+.|.|+||+|||||+.++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999863
No 364
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.44 E-value=0.03 Score=48.98 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.4
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..+++.|+||+|||||+.++.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 365
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.41 E-value=0.028 Score=53.20 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.9
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.-+.|.||+|+||||+++.++..++
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999873
No 366
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.38 E-value=0.035 Score=51.80 Aligned_cols=27 Identities=26% Similarity=0.182 Sum_probs=23.8
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCce
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDL 262 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i 262 (482)
-+.|.||+|+||||+++.++..++.+.
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 467889999999999999999998643
No 367
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.37 E-value=0.058 Score=50.11 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=19.0
Q ss_pred cccccCCCCchHHHHHHHHHH
Q 011573 236 GYLLYGPPGTGKSTMIAAMAN 256 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~ 256 (482)
-++|.|.+|+|||+|+..+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 489999999999999999875
No 368
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.35 E-value=0.032 Score=48.42 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.0
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.--+++.|++|+|||||+.++.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999865
No 369
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.34 E-value=0.047 Score=54.70 Aligned_cols=23 Identities=48% Similarity=0.756 Sum_probs=20.8
Q ss_pred cccccCCCCchHHHHHHHHHHHh
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l 258 (482)
-+.|.||||+|||||+.++++.+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47799999999999999999865
No 370
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.34 E-value=0.027 Score=54.43 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.5
Q ss_pred cccccCCCCchHHHHHHHHHHHhC
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.+.|.||+|+|||||+++|++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 467899999999999999999874
No 371
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.33 E-value=0.042 Score=55.06 Aligned_cols=32 Identities=38% Similarity=0.441 Sum_probs=25.5
Q ss_pred ccccccCCCCchHHHHHHHHHHHh---CCceeecc
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLE 266 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~ 266 (482)
.-+.|.|+||+||||++.+++..+ |..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 457899999999999999999886 55554443
No 372
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.31 E-value=0.033 Score=48.84 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.0
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
...+++.|++|+|||||+.++.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 373
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.27 E-value=0.017 Score=54.09 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.7
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.-+.|.||.|+|||||+++|++.+.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3477999999999999999998764
No 374
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.24 E-value=0.021 Score=50.94 Aligned_cols=21 Identities=24% Similarity=0.623 Sum_probs=19.3
Q ss_pred cccccCCCCchHHHHHHHHHH
Q 011573 236 GYLLYGPPGTGKSTMIAAMAN 256 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~ 256 (482)
-++|.|+||+|||||+..+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999986
No 375
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.21 E-value=0.024 Score=52.84 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=21.9
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.-+.|.||.|+|||||.++|++.+.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3477999999999999999998764
No 376
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.19 E-value=0.029 Score=48.60 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.2
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..+++.|+||+|||||+.++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999999853
No 377
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.19 E-value=0.023 Score=51.01 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.7
Q ss_pred cccccCCCCchHHHHHHHHHHHhC
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.+.|.||+|+|||||++.|++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 567899999999999999999874
No 378
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.18 E-value=0.035 Score=49.41 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.6
Q ss_pred CccccccCCCCchHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMAN 256 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~ 256 (482)
...+++.|++|+|||+|+.++.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999999984
No 379
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.15 E-value=0.2 Score=49.95 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=20.1
Q ss_pred cccccCCCCchHHHHHHHHHHH
Q 011573 236 GYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~ 257 (482)
-+.+.|++|+|||||+.++.+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6888999999999999999983
No 380
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.13 E-value=0.034 Score=54.47 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=27.2
Q ss_pred CccccccCCCCchHHHHHHHHHHHh---CCceeecccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLELT 268 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l~ 268 (482)
++-+++.||+|+|||+++..+|..+ +..+..+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4457788999999999999999877 5566555544
No 381
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.13 E-value=0.029 Score=59.83 Aligned_cols=25 Identities=36% Similarity=0.402 Sum_probs=22.5
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.-+.|.||+|+||||++++||+.++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 3478999999999999999999985
No 382
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.12 E-value=0.025 Score=54.33 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.9
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.-+.|.||.|+|||||+++|++.+.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3477999999999999999998774
No 383
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.10 E-value=0.024 Score=53.74 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=21.9
Q ss_pred CccccccCCCCchHHHHHHHHHHHh
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
..-+.|.||.|+|||||+++|++.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999999876
No 384
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.06 E-value=0.021 Score=53.72 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=22.0
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.-+.|.||.|+|||||.++|++.+.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4578999999999999999998763
No 385
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.99 E-value=0.031 Score=53.24 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.8
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-+.|.||.|+|||||+++|++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34779999999999999999996
No 386
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.98 E-value=0.032 Score=49.51 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.5
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-++|.|++|+|||||+.++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999873
No 387
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.96 E-value=0.034 Score=48.68 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.1
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
--+++.|+||+|||+|+.++.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999999753
No 388
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.96 E-value=0.032 Score=53.70 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=21.3
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.-+.|.||.|+|||||+++|++.+
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 347899999999999999999963
No 389
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.94 E-value=0.039 Score=61.54 Aligned_cols=24 Identities=42% Similarity=0.612 Sum_probs=19.4
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.-+|+.||||||||+++..++..+
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999888776544
No 390
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.94 E-value=0.038 Score=48.21 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.2
Q ss_pred cccccCCCCchHHHHHHHHHHHh
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l 258 (482)
-.+++||.|+|||+++.||+-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999998655
No 391
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.94 E-value=0.027 Score=54.01 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.4
Q ss_pred CccccccCCCCchHHHHHHHHHHHhC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
..-+.|.||.|+|||||+++|++.+.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 34588999999999999999998763
No 392
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.93 E-value=0.04 Score=47.81 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.7
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
...+++.|++|+|||+|+.++.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999763
No 393
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.91 E-value=0.081 Score=51.02 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.3
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-+.|.|+||+|||||..++++.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 35789999999999999999873
No 394
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.90 E-value=0.04 Score=49.05 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.8
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
--+++.|++|+|||||+.++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999875
No 395
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.88 E-value=0.038 Score=54.91 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=23.2
Q ss_pred CccccccCCCCchHHHHHHHHHHHhC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
...+++.||+|+|||||+++|++.+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45789999999999999999999873
No 396
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.87 E-value=0.039 Score=47.88 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.7
Q ss_pred cccccCCCCchHHHHHHHHHH
Q 011573 236 GYLLYGPPGTGKSTMIAAMAN 256 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~ 256 (482)
-+++.|+||+|||+|+.++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999864
No 397
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.86 E-value=0.025 Score=54.11 Aligned_cols=25 Identities=40% Similarity=0.687 Sum_probs=21.7
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.-+.|.||.|+|||||+++|++.+.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3477999999999999999998763
No 398
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.85 E-value=0.029 Score=53.99 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=21.9
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.-+.|.||.|+|||||+++|++.+.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3477999999999999999998764
No 399
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.83 E-value=0.033 Score=58.92 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=24.9
Q ss_pred CCCcCccccccCCCCchHHHHHHHHHHHh
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
|++...-++|.||||+|||+|++.+|+..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 55656668999999999999999999865
No 400
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.81 E-value=0.045 Score=47.91 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.8
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..-+++.|++|+|||||+.++.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999753
No 401
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.81 E-value=0.029 Score=54.35 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.0
Q ss_pred cccccCCCCchHHHHHHHHHHHh
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l 258 (482)
-+.|.||.|+|||||+++|++.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999866
No 402
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.78 E-value=0.036 Score=48.44 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.3
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
--+++.|++|+|||+|+.++.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 403
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.78 E-value=0.022 Score=57.42 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=23.1
Q ss_pred CccccccCCCCchHHHHHHHHHHHhC
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
...++|.||+|+||||++++|++.+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45788999999999999999998764
No 404
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.77 E-value=0.03 Score=54.11 Aligned_cols=25 Identities=44% Similarity=0.620 Sum_probs=22.0
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.-+.|.||.|+|||||+++|++.+.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4578999999999999999998763
No 405
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.75 E-value=0.034 Score=55.89 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.9
Q ss_pred cccccCCCCchHHHHHHHHHHHh
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l 258 (482)
-+.|.||+|||||||.++||+.+
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47789999999999999999876
No 406
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.75 E-value=0.027 Score=53.65 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=21.9
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.-+.|.||.|+|||||+++|++.+.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4578999999999999999998763
No 407
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.73 E-value=0.03 Score=53.01 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.5
Q ss_pred cccccCCCCchHHHHHHHHHHHhC
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
-+.|.||.|+|||||.++|++.+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 477999999999999999998764
No 408
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.72 E-value=0.13 Score=58.79 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.5
Q ss_pred CccccccCCCCchHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMA 255 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA 255 (482)
.+-++|.||.|+|||++.+.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3668899999999999999983
No 409
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.71 E-value=0.034 Score=58.83 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=23.4
Q ss_pred CCCcCccccccCCCCchHHHHHHH--HHHHh
Q 011573 230 GRAWKRGYLLYGPPGTGKSTMIAA--MANLL 258 (482)
Q Consensus 230 g~~~~rg~LL~GPpGtGKTsl~~a--iA~~l 258 (482)
+++...-++|.||+|+|||+|++. +++..
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 455566799999999999999999 55544
No 410
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.71 E-value=0.035 Score=55.71 Aligned_cols=24 Identities=25% Similarity=0.642 Sum_probs=21.2
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.-+.|.||.|||||||.++||+..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 347789999999999999999876
No 411
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.68 E-value=0.036 Score=56.25 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.9
Q ss_pred cccccCCCCchHHHHHHHHHHHh
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l 258 (482)
-+-|.||+|||||||.++||+..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47789999999999999999876
No 412
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.67 E-value=0.025 Score=53.94 Aligned_cols=26 Identities=42% Similarity=0.569 Sum_probs=22.5
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGY 260 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~ 260 (482)
.-+.|.||.|+|||||.++|++.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 34789999999999999999988753
No 413
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.66 E-value=0.047 Score=51.21 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.9
Q ss_pred cccccCCCCchHHHHHHHHHHHhCC
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGY 260 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~ 260 (482)
-+.|.|++|+||||+++.++..++.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4677899999999999999998754
No 414
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.65 E-value=0.11 Score=46.74 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.0
Q ss_pred CccccccCCCCchHHHHHHHHHHHh
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
..-++|.|++|+|||+|++.+.+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999887643
No 415
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.65 E-value=0.031 Score=56.26 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.9
Q ss_pred cccccCCCCchHHHHHHHHHHHh
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l 258 (482)
-+.|.||+|||||||.++||+..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47789999999999999999866
No 416
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.64 E-value=0.037 Score=55.78 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=20.8
Q ss_pred cccccCCCCchHHHHHHHHHHHh
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l 258 (482)
-+.|.||.|||||||.++||+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 46789999999999999999876
No 417
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.63 E-value=0.062 Score=50.70 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=24.5
Q ss_pred cccccCCCCchHHHHHHHHHHHh--CCceeecc
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL--GYDLYDLE 266 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l--~~~i~~l~ 266 (482)
-+++.|++|+||||++..+|..+ |..+..++
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 46788999999999999999876 55554444
No 418
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.62 E-value=0.046 Score=54.50 Aligned_cols=24 Identities=46% Similarity=0.600 Sum_probs=21.2
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.-+.|.||||+|||||++++++.+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 347789999999999999999876
No 419
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.59 E-value=0.029 Score=54.46 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=21.4
Q ss_pred cccccCCCCchHHHHHHHHHHHhC
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
-+.|.||.|+|||||+++|++.+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 477999999999999999998763
No 420
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.59 E-value=0.033 Score=53.34 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=21.4
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.-+.|.||.|+|||||+++|++.+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999999876
No 421
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.55 E-value=0.038 Score=55.62 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.8
Q ss_pred cccccCCCCchHHHHHHHHHHHh
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l 258 (482)
-+.|.||+|||||||.++||+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47789999999999999999865
No 422
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.50 E-value=0.04 Score=55.78 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=21.2
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.-+.|.||.|||||||.++||+.+
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 347789999999999999999876
No 423
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.49 E-value=0.042 Score=48.08 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.8
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..+++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 424
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.48 E-value=0.034 Score=53.49 Aligned_cols=24 Identities=38% Similarity=0.642 Sum_probs=21.3
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.-+.|.||.|+|||||+++|++.+
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 347799999999999999999876
No 425
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.48 E-value=0.041 Score=48.88 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.0
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.--+++.|+||+|||+|+.++++.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 426
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.48 E-value=0.043 Score=51.01 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.0
Q ss_pred cccccCCCCchHHHHHHHHHHHh
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l 258 (482)
-+.|.||+|+||||.++.++..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999999999988
No 427
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.47 E-value=0.042 Score=48.59 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.6
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-+++.|++|+|||||+.++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 428
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.46 E-value=0.039 Score=55.83 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=21.3
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.-+.|.||+|||||||.++||+.+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 347789999999999999999876
No 429
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.43 E-value=0.05 Score=48.46 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.6
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..++|.|++|+|||+|+.++.+.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 430
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.38 E-value=0.29 Score=53.60 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=16.1
Q ss_pred CccccccCCCCchHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMI 251 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~ 251 (482)
.+.+++.||+|+|||..+
T Consensus 39 ~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIA 56 (720)
T ss_dssp TCEEEEECCGGGCHHHHH
T ss_pred CCcEEEEcCCccHHHHHH
Confidence 567999999999999877
No 431
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.36 E-value=0.052 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.5
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..+++.|++|+|||+|+.++.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 432
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.36 E-value=0.046 Score=50.13 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.5
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
+-++|.|+||+|||||+.+++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999998864
No 433
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.31 E-value=0.033 Score=53.24 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.4
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.-+.|.||.|+|||||.++|++.+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 347799999999999999999876
No 434
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.31 E-value=0.048 Score=47.71 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.0
Q ss_pred CccccccCCCCchHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMAN 256 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~ 256 (482)
..-+++.|+||+|||||+.++.+
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999864
No 435
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.29 E-value=0.038 Score=48.86 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.3
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-+.|.|+||+|||||+.++++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34789999999999999999874
No 436
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.22 E-value=0.032 Score=53.71 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=21.9
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.-+-|.||.|+|||||+++|++.+.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3477999999999999999998763
No 437
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.21 E-value=0.044 Score=48.11 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.5
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
--+++.|+||+|||+|+..+++.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999874
No 438
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.21 E-value=0.035 Score=55.83 Aligned_cols=24 Identities=33% Similarity=0.646 Sum_probs=21.2
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.-+.|.||.|||||||.++||+..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 347789999999999999999865
No 439
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.19 E-value=0.088 Score=54.01 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.3
Q ss_pred cccccCCCCchHHHHHHHHHHHh
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l 258 (482)
-+.|.||+|+|||||+++|++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46789999999999999999854
No 440
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.17 E-value=0.092 Score=54.28 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.5
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCce
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDL 262 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i 262 (482)
-+.|.||+|||||+|++.||+....+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~~~ 185 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRADV 185 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 378999999999999999999986543
No 441
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.16 E-value=0.058 Score=48.23 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.3
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
--++|.|++|+|||+|+.++.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 35899999999999999998864
No 442
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.16 E-value=0.057 Score=47.40 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=20.8
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-.+++.|++|+|||+|+.++.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998864
No 443
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.12 E-value=0.058 Score=47.45 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.1
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
-.+++.|+||+|||||+.++.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999853
No 444
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.12 E-value=0.059 Score=48.00 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=20.4
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-++|.|++|+|||||+.++.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 445
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.10 E-value=0.041 Score=52.95 Aligned_cols=24 Identities=38% Similarity=0.811 Sum_probs=21.4
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.-+.|.||.|+|||||.++|++.+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 347899999999999999999875
No 446
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.03 E-value=0.043 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=20.6
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..+.|.|+||+|||||+.++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999865
No 447
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.03 E-value=0.05 Score=48.82 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.5
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-+++.|+||+|||+|+.++++.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999873
No 448
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.01 E-value=0.08 Score=48.82 Aligned_cols=28 Identities=36% Similarity=0.611 Sum_probs=23.3
Q ss_pred ccccCCCCchHHHHHHHHHHHh--CCceee
Q 011573 237 YLLYGPPGTGKSTMIAAMANLL--GYDLYD 264 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l--~~~i~~ 264 (482)
+.|.|+.|+||||.++.++..| |++++.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~ 34 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIM 34 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence 5678999999999999999998 445443
No 449
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.01 E-value=0.061 Score=48.45 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=21.5
Q ss_pred CccccccCCCCchHHHHHHHHHHHh
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
..-+++.|++|+|||||+.++.+.-
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998753
No 450
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.00 E-value=0.047 Score=48.73 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.9
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..-+++.|++|+|||||+.++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999754
No 451
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.98 E-value=0.038 Score=48.97 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.4
Q ss_pred cccccCCCCchHHHHHHHHHHH
Q 011573 236 GYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~ 257 (482)
-+++.|++|+|||||+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999999864
No 452
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.94 E-value=0.061 Score=48.05 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.3
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
--+++.|++|+|||+|+.++.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 34899999999999999999864
No 453
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.89 E-value=0.063 Score=48.60 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.9
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..-+++.|+||+|||+|+.++.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 454
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.88 E-value=0.098 Score=51.06 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=25.7
Q ss_pred CccccccCCCCchHHHHHHHHHHHh---CCceeeccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLEL 267 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l 267 (482)
++-+.+.||+|+||||++..+|..+ +..+..+++
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 3457788999999999999999876 445544433
No 455
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.88 E-value=0.064 Score=47.90 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.6
Q ss_pred cccccCCCCchHHHHHHHHHHH
Q 011573 236 GYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~ 257 (482)
-++|.|++|+|||+|+..+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999888764
No 456
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.84 E-value=0.065 Score=47.94 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.1
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
-.++|.|+||+|||+|+.++.+.-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 457
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.81 E-value=0.024 Score=51.51 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=19.9
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-+.|.||+|+|||||++++++.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 34789999999999999998754
No 458
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.79 E-value=0.073 Score=53.30 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=24.3
Q ss_pred cccccCCCCchHHHHHHHHHHHhCCcee
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGYDLY 263 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~~i~ 263 (482)
-+.|.||+|+|||+|++.|++....+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 4789999999999999999999866543
No 459
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=91.71 E-value=0.069 Score=50.69 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=24.1
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCcee
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLY 263 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~ 263 (482)
+.|+|++|||||++++.++..+|++++
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g~~~~ 30 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYSAVKY 30 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 568999999999999999999997763
No 460
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.61 E-value=0.059 Score=48.71 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.5
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-++|.|++|+|||||+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 461
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.61 E-value=0.041 Score=54.13 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.6
Q ss_pred cCccccccCCCCchHHHHHHHHHHHh
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
...-+.|.||.|+|||||+++|++.+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34558899999999999999999876
No 462
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.61 E-value=0.059 Score=56.09 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=23.1
Q ss_pred CcCccccccCCCCchHHHHHHHHHHHh
Q 011573 232 AWKRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 232 ~~~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
....-+.|.||.|+|||||++.||+.+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 334458899999999999999999976
No 463
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.57 E-value=0.061 Score=47.32 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.3
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-++|.|+||+|||+|+.++.+.
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999853
No 464
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.57 E-value=0.054 Score=48.04 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.9
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..-+++.|++|+|||||+.++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999765
No 465
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.55 E-value=0.054 Score=47.99 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.0
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
...+++.|+||+|||||+.++.+.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998754
No 466
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.51 E-value=0.065 Score=49.27 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=21.6
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.-++|.|++|+|||||+..++..+
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 567888999999999999999876
No 467
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.48 E-value=0.045 Score=48.31 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=10.3
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..-++|.|+||+|||||+.++.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999998753
No 468
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.44 E-value=0.063 Score=48.44 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=21.0
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.-++|.|++|+|||+|+.++.+.-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 458999999999999999998743
No 469
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.42 E-value=0.045 Score=53.42 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.5
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.-+.|.||.|+|||||+++|++.+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 347899999999999999999876
No 470
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.41 E-value=0.056 Score=57.55 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.3
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.-++|.|+||+||||++++++..++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhh
Confidence 4478899999999999999999875
No 471
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.40 E-value=0.053 Score=55.22 Aligned_cols=25 Identities=40% Similarity=0.589 Sum_probs=21.7
Q ss_pred CccccccCCCCchHHHHHHHHHHHh
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
..-+.|.||+|||||||.++||+.+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3457899999999999999999865
No 472
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=91.40 E-value=0.045 Score=50.23 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=19.9
Q ss_pred ccccccCCCCchHHHHHHH-HHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAA-MANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~a-iA~~l 258 (482)
--+++.|++|+|||||+.+ +.+..
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3589999999999999999 55543
No 473
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.37 E-value=0.065 Score=50.09 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.1
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..-++|.|++|+|||||+.++.+.
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 356899999999999999999864
No 474
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=91.37 E-value=0.015 Score=45.56 Aligned_cols=63 Identities=10% Similarity=-0.015 Sum_probs=29.2
Q ss_pred HHHHHHHHHhccccCCCcHHHHHHHhcC-CCCCHHHHHHHhcccC----CCCCHHHHHHHHHHHHHHH
Q 011573 390 EAFKVLAKNYLNIESHNLFDKIGELLGE-AKMTPADVAEHLMPKT----FPADVEFSLRSLNQALELA 452 (482)
Q Consensus 390 ~~~~~l~~~~l~~~~~~~~~~i~~l~~~-~~~s~adi~~~l~~~~----~~~~~~~~~~~l~~al~~~ 452 (482)
++|..|++.++.........++..++.. .|||+|||..+|..++ ......+..+++..++++.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 3678889888865433222235566664 4999999998877532 1122345566677776654
No 475
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.34 E-value=0.074 Score=52.44 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=24.2
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCcee
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLY 263 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~ 263 (482)
.+|+||.|++|+|||+++.++... |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 578999999999999999999875 54443
No 476
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.30 E-value=0.067 Score=48.85 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.8
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-+++.|++|+|||+|+.++++.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 477
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.29 E-value=0.054 Score=52.97 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=21.9
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLGY 260 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~~ 260 (482)
.-+.|.||+|+|||||+++|++....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccc
Confidence 34678999999999999999976643
No 478
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.27 E-value=0.07 Score=46.95 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.2
Q ss_pred cCccccccCCCCchHHHHHHHHH
Q 011573 233 WKRGYLLYGPPGTGKSTMIAAMA 255 (482)
Q Consensus 233 ~~rg~LL~GPpGtGKTsl~~aiA 255 (482)
.+.-+++.|+||+|||||+.++.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 34579999999999999999886
No 479
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=91.18 E-value=0.065 Score=52.78 Aligned_cols=29 Identities=31% Similarity=0.324 Sum_probs=23.3
Q ss_pred CccccccCCCCchHHHHHHHHHHHhCCcee
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLLGYDLY 263 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l~~~i~ 263 (482)
.+|+||.||+|+|||+++.++.. -|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 57899999999999999988754 454443
No 480
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.14 E-value=0.07 Score=54.93 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.5
Q ss_pred ccccCCCCchHHHHHHHHHHH
Q 011573 237 YLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~ 257 (482)
+.|.||+|+|||||+++|++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 679999999999999999986
No 481
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.13 E-value=0.089 Score=47.33 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.2
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
--++|.|+||+|||||+..+++.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999864
No 482
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.09 E-value=0.078 Score=53.32 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=21.7
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.-+.|.||||+|||||+++|++...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3578999999999999999997664
No 483
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.03 E-value=0.094 Score=48.12 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.9
Q ss_pred cccccCCCCchHHHHHHHHHHHhCC
Q 011573 236 GYLLYGPPGTGKSTMIAAMANLLGY 260 (482)
Q Consensus 236 g~LL~GPpGtGKTsl~~aiA~~l~~ 260 (482)
-.+|+||.|+|||+++.||.-.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4688999999999999999877754
No 484
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.00 E-value=0.13 Score=50.34 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.5
Q ss_pred ccccccCCCCchHHHHHHHHHHHhC
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLLG 259 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l~ 259 (482)
.-+.|.||+|+|||||+++|+ .+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 347789999999999999999 554
No 485
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.99 E-value=0.14 Score=51.72 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=26.7
Q ss_pred CccccccCCCCchHHHHHHHHHHHh---CCceeeccc
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL---GYDLYDLEL 267 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l~l 267 (482)
...+++.||+|+|||++++.++..+ +..++.++.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4578999999999999999998764 555555543
No 486
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=90.91 E-value=0.13 Score=51.73 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=19.1
Q ss_pred ccccCCCCchHHHHHHHHHHH
Q 011573 237 YLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~ 257 (482)
+.|.|+||+|||||+.++++.
T Consensus 182 V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 679999999999999999864
No 487
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.90 E-value=0.13 Score=47.01 Aligned_cols=29 Identities=34% Similarity=0.400 Sum_probs=23.8
Q ss_pred ccccCCCCchHHHHHHHHHHHh---CCceeec
Q 011573 237 YLLYGPPGTGKSTMIAAMANLL---GYDLYDL 265 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l---~~~i~~l 265 (482)
+.|.|+.|+||||.++.++..| |.+++..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4578999999999999999988 5665543
No 488
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.85 E-value=0.28 Score=51.21 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=24.4
Q ss_pred ccccCCCCchHHHH-HHHHHHHhCCceee
Q 011573 237 YLLYGPPGTGKSTM-IAAMANLLGYDLYD 264 (482)
Q Consensus 237 ~LL~GPpGtGKTsl-~~aiA~~l~~~i~~ 264 (482)
.++.|++|||||+| ...|++..+.+++.
T Consensus 165 ~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~ 193 (502)
T 2qe7_A 165 ELIIGDRQTGKTTIAIDTIINQKGQDVIC 193 (502)
T ss_dssp CEEEECSSSCHHHHHHHHHHGGGSCSEEE
T ss_pred EEEECCCCCCchHHHHHHHHHhhcCCcEE
Confidence 89999999999999 57999998877543
No 489
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.83 E-value=0.08 Score=47.23 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.7
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..+++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 490
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.80 E-value=0.078 Score=49.47 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=21.7
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCcee
Q 011573 237 YLLYGPPGTGKSTMIAAMANLLGYDLY 263 (482)
Q Consensus 237 ~LL~GPpGtGKTsl~~aiA~~l~~~i~ 263 (482)
+.|.||.|+||||+++.|++. +..+.
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~-~g~v~ 48 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY-KNDIC 48 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG-TTTEE
T ss_pred EEEECCCCCCHHHHHHHHHhc-cCCeE
Confidence 668899999999999999987 44443
No 491
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.79 E-value=0.11 Score=51.80 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=21.3
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.-+.|.||||+||||++.+++..+
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457789999999999999999876
No 492
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.79 E-value=0.079 Score=53.42 Aligned_cols=24 Identities=38% Similarity=0.510 Sum_probs=21.3
Q ss_pred ccccccCCCCchHHHHHHHHHHHh
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
.-+-|.||.|+|||||+++|++.+
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 347799999999999999999865
No 493
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.75 E-value=0.34 Score=49.17 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=21.9
Q ss_pred CccccccCCCCchHHHHHHHHHHHh
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMANLL 258 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~~l 258 (482)
..-+++.||||||||+|++.||+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 3458999999999999999999865
No 494
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.70 E-value=0.083 Score=47.92 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=20.6
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..+++.|++|+|||+|+.++.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 495
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.64 E-value=0.094 Score=47.06 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=19.7
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
--+++.|++|+|||+|+.++.+.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998743
No 496
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.61 E-value=0.086 Score=47.03 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.1
Q ss_pred CccccccCCCCchHHHHHHHHHH
Q 011573 234 KRGYLLYGPPGTGKSTMIAAMAN 256 (482)
Q Consensus 234 ~rg~LL~GPpGtGKTsl~~aiA~ 256 (482)
..-++|.|++|+|||+|+.++.+
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999999864
No 497
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=90.57 E-value=0.1 Score=48.03 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.6
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
.-++|.|++|+|||+|+.++.+.
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 498
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.52 E-value=0.063 Score=47.50 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.3
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..+++.|++|+|||+|+.++.+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999854
No 499
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.49 E-value=0.088 Score=47.52 Aligned_cols=23 Identities=13% Similarity=0.358 Sum_probs=20.6
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMANL 257 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~~ 257 (482)
..+++.|++|+|||+|+.++.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 500
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=90.45 E-value=0.082 Score=50.47 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.9
Q ss_pred ccccccCCCCchHHHHHHHHHH
Q 011573 235 RGYLLYGPPGTGKSTMIAAMAN 256 (482)
Q Consensus 235 rg~LL~GPpGtGKTsl~~aiA~ 256 (482)
.-++|.|+||+|||||+.++.+
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 3588999999999999999986
Done!