BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011574
(482 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224130652|ref|XP_002320894.1| predicted protein [Populus trichocarpa]
gi|222861667|gb|EEE99209.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/483 (77%), Positives = 430/483 (89%), Gaps = 4/483 (0%)
Query: 1 MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGAS 60
MAE TE+E+RVDLEEDNYMEE+DDDVE+Q++ED E++ GD + EEN ++E D SK S
Sbjct: 1 MAEGTEIEERVDLEEDNYMEEIDDDVEDQLDEDGEDDAGDPHAEENVEEEYED-SKTEGS 59
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120
+KDQS EA+R DT E+E+KPTASV E+EK+KHAQLLALPP+GSEVFIGGLP+D E
Sbjct: 60 QKDQSPEADRIVADTEPAEDEQKPTASVNEEEKEKHAQLLALPPHGSEVFIGGLPRDVIE 119
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
++LRDLCEPIG++FE+RLMKDK+SGESKGFAFV+F+SKE A+KAI+ELHSK+ KGKT+RC
Sbjct: 120 DELRDLCEPIGEIFEIRLMKDKDSGESKGFAFVAFKSKEVARKAIEELHSKDYKGKTLRC 179
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
S+SETKNRLFIGNVPKN TEDEFRK+IE+VGPGVE IELIKDPQ P+RNRGF+F+LYYNN
Sbjct: 180 SISETKNRLFIGNVPKNLTEDEFRKIIEEVGPGVEVIELIKDPQTPTRNRGFAFILYYNN 239
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQVKALYVKNIPDNTSTEKI 299
ACADYSRQKMLNANFKLDG+TPT+SWADPK T PDHSAA+SQVKALYVKNIP+NTSTE++
Sbjct: 240 ACADYSRQKMLNANFKLDGHTPTVSWADPKGTPPDHSAASSQVKALYVKNIPENTSTEQL 299
Query: 300 KELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359
K LFQRHG+VTKVVMPPGK+GKRDFGFIHYAERSSALKAV+D EKYEIDGQVLEVVLAKP
Sbjct: 300 KGLFQRHGDVTKVVMPPGKAGKRDFGFIHYAERSSALKAVRDAEKYEIDGQVLEVVLAKP 359
Query: 360 QTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPS 419
Q DKK + +PY+ G+ P +P Y GFAG PYGS+GTGFGVA+ FQQP+IYGRGPMP+
Sbjct: 360 QADKKPDAAYPYNAGVHPNPVPLPAYSGFAGNPYGSLGTGFGVASSFQQPVIYGRGPMPA 419
Query: 420 GMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRRVDRSNGPGGRGGRGGSSGGDDGNRGRRY 479
GMHMVPMVLPDG+IGYVLQQPGVQMP PRPRRVDR+NGP G G G SS DDGNRGRRY
Sbjct: 420 GMHMVPMVLPDGRIGYVLQQPGVQMPQPRPRRVDRNNGPSGPGRAGNSS--DDGNRGRRY 477
Query: 480 RPY 482
RPY
Sbjct: 478 RPY 480
>gi|356573261|ref|XP_003554781.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/489 (71%), Positives = 421/489 (86%), Gaps = 13/489 (2%)
Query: 1 MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEED----PEEEGGDGNFEENDDDEEYDHSK 56
M+E E+++RVDL+E+NYMEEMDDDVEEQ+++D EEE +G+FEE+ EY+ S
Sbjct: 1 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGVEEENAEGSFEED----EYEDSA 56
Query: 57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPK 116
A A KDQ EA ++D T ++E+K + + EDEK+KH +LLALPP+GSEVFIGGLP+
Sbjct: 57 AEAGGKDQLPEAEKSDIATEFGDDEQK-LSFIDEDEKEKHDELLALPPHGSEVFIGGLPR 115
Query: 117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176
D E+DLR+LCEP+GD+ EVRLMKD+++GE+KG+AFV+F++KE A+KAI+E+HSKE KGK
Sbjct: 116 DVCEDDLRELCEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHSKEFKGK 175
Query: 177 TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVL 236
T+RCSLSETK+RLFIGNVPK WTED+FRKV+E VGPGVETIELIKDPQNPSRNRGF+FVL
Sbjct: 176 TLRCSLSETKHRLFIGNVPKTWTEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVL 235
Query: 237 YYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTST 296
YYNNACADYSRQKM +++FKLDGNTPT++WADPK++PDHS A+SQVKALYVKNIP+N +T
Sbjct: 236 YYNNACADYSRQKMASSSFKLDGNTPTVTWADPKNSPDHS-ASSQVKALYVKNIPENVTT 294
Query: 297 EKIKELFQRHGEVTKVVMPPGKS-GKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355
E++KELF+RHGEVTKVVMPPGK+ GKRDFGFIHYAERSSALKAVKDTEKYEIDGQ+LEVV
Sbjct: 295 EQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQMLEVV 354
Query: 356 LAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRG 415
LAKPQ DKK +G + Y+PGL P H+PH YG F+G PYGS+G G+GVAAG+QQPMIYGRG
Sbjct: 355 LAKPQADKKPDGGYAYNPGLHPNHIPHPAYGNFSGNPYGSLGAGYGVAAGYQQPMIYGRG 414
Query: 416 PMPSGMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRRVDRSN--GPGGRGGRGGSSGGDDG 473
PMP+GM MVPMVLPDG+IGYVLQQPGVQ+P RPRR+DRSN G GG SG D+G
Sbjct: 415 PMPAGMQMVPMVLPDGRIGYVLQQPGVQVPATRPRRIDRSNGPSGQPGRGGGGGSGNDEG 474
Query: 474 NRGRRYRPY 482
NR RRYRPY
Sbjct: 475 NRSRRYRPY 483
>gi|225453602|ref|XP_002264834.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
gi|296088998|emb|CBI38701.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/484 (76%), Positives = 419/484 (86%), Gaps = 10/484 (2%)
Query: 1 MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGAS 60
MAE TEVEDRVDL++DNYMEEMDDDVEEQ+E D E GGD N EE EY+ SKAG S
Sbjct: 1 MAEGTEVEDRVDLDDDNYMEEMDDDVEEQIE-DGVEGGGDENVEE-----EYEDSKAGGS 54
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120
+DQ E + + +++EE PTASV EDEK+KHAQLLALPP+GSE+FIGGLP++A E
Sbjct: 55 GEDQLLEVDESRIANEPLKDEENPTASVDEDEKEKHAQLLALPPHGSEIFIGGLPREALE 114
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
EDLRDLCEPIG+ EVRLMK+++SGESKG+AF+SF++KE A+KAI+ELHSKE KG+TIRC
Sbjct: 115 EDLRDLCEPIGEALEVRLMKNRDSGESKGYAFISFKTKEIAQKAIEELHSKEFKGRTIRC 174
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
SLSE+K+RLFIGNVPK+WT+DEFRKVIED+GPG E IELIKDPQNPSRNRGF+FV YYNN
Sbjct: 175 SLSESKHRLFIGNVPKSWTDDEFRKVIEDIGPGAENIELIKDPQNPSRNRGFAFVEYYNN 234
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300
ACADY RQKM ++NFKLDGNTPT+SWADPKST DHSAAA QVKALYVKNIP+NT+TE++K
Sbjct: 235 ACADYGRQKMSSSNFKLDGNTPTVSWADPKSTSDHSAAA-QVKALYVKNIPENTTTEQLK 293
Query: 301 ELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
ELFQRHGEVTKVVMPP KSG KRDFGFIH+AERSSALKAVKDTEK+EIDGQ L+V LAK
Sbjct: 294 ELFQRHGEVTKVVMPPAKSGQSKRDFGFIHFAERSSALKAVKDTEKHEIDGQALDVSLAK 353
Query: 359 PQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMP 418
PQ+DKK EG PYS G P LPH GYGGF G PYGS+G G+GV+A FQQP+IYGRGPMP
Sbjct: 354 PQSDKKFEGVHPYSSGH-PNFLPHPGYGGFGGNPYGSLGPGYGVSAPFQQPVIYGRGPMP 412
Query: 419 SGMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRRVDRSNGPGGRGGRGGSSGGDDGNRGRR 478
+GMHMVPMVLPDG+IGYVLQQPGVQMPPPRPRR +RSNG G+ GRGGSSG D NR RR
Sbjct: 413 AGMHMVPMVLPDGRIGYVLQQPGVQMPPPRPRRNERSNGSSGQQGRGGSSGSGDDNRSRR 472
Query: 479 YRPY 482
YRPY
Sbjct: 473 YRPY 476
>gi|356506096|ref|XP_003521823.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/485 (71%), Positives = 419/485 (86%), Gaps = 5/485 (1%)
Query: 1 MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGAS 60
M+E E+++RVDL+E+NYMEEMDDDVEEQ+++D + G D N E + ++ EY+ S A A
Sbjct: 1 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEDSAAEAG 60
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120
KDQ EA ++D T ++E+K + + EDEK+KH +LLALPP+GSEVFIGGLP+D E
Sbjct: 61 GKDQLPEAEKSDIATEFGDDEQK-LSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCE 119
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
+DLR+LCEP+GD+ EVRLMKD+++GE KG+AFV+F++KE A+KAI+E+HSKE KGKT+RC
Sbjct: 120 DDLRELCEPMGDILEVRLMKDRDTGEHKGYAFVAFKTKEVAQKAIEEIHSKEFKGKTLRC 179
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
SLSETK+RLFIGNVPK WTED+FRKV+E VGPGVETIELIKDPQNPSRNRGF+FVLYYNN
Sbjct: 180 SLSETKHRLFIGNVPKTWTEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVLYYNN 239
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300
ACADYSRQKM +++FKLDGNTPT++WADPK++PDHS A+SQVKALYVKNIP+N +TE++K
Sbjct: 240 ACADYSRQKMASSSFKLDGNTPTVTWADPKNSPDHS-ASSQVKALYVKNIPENVTTEQLK 298
Query: 301 ELFQRHGEVTKVVMPPGKS-GKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359
ELF+RHGEVTKVVMPPGK+ GKRDFGFIHYAERSSALKAVKDTEKYEIDGQ+LEVVLAKP
Sbjct: 299 ELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKP 358
Query: 360 QTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPS 419
Q DKK +G + Y+PGL P H+PH YG F+G PYGS+G G+GVAAG+QQPMIYGRGPMP+
Sbjct: 359 QADKKPDGGYAYNPGLHPNHVPHPAYGNFSGNPYGSLGAGYGVAAGYQQPMIYGRGPMPA 418
Query: 420 GMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRRVDRSN--GPGGRGGRGGSSGGDDGNRGR 477
GM MVPM+LPDG+IGYVLQQPGVQ+PP RPRR DRSN G GG+SG D+GNR R
Sbjct: 419 GMQMVPMMLPDGRIGYVLQQPGVQVPPARPRRNDRSNGPSGQPGRGGGGASGNDEGNRSR 478
Query: 478 RYRPY 482
RYRPY
Sbjct: 479 RYRPY 483
>gi|255648067|gb|ACU24489.1| unknown [Glycine max]
Length = 439
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/441 (71%), Positives = 386/441 (87%), Gaps = 3/441 (0%)
Query: 1 MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGAS 60
M+E E+++RVDL+E+NYMEEMDDDVEEQ+++D + G D N E + ++ EY+ S A A
Sbjct: 1 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEDSAAEAG 60
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120
KDQ EA ++D T ++E+K + + EDEK+KH +LLALPP+GSEVFIGGLP+D E
Sbjct: 61 GKDQLPEAEKSDIATEFGDDEQK-LSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCE 119
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
+DLR+LCEP+GD+ EVRLMKD+++GE KG+AFV+F++KE A+KAI+E+HSKE KGKT+RC
Sbjct: 120 DDLRELCEPMGDILEVRLMKDRDTGEHKGYAFVAFKAKEVAQKAIEEIHSKEFKGKTLRC 179
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
SLSETK+RLFIGNVPK WTED+FRKV+E VGPGVETIELIKDPQNPSRNRGF+FVLYYNN
Sbjct: 180 SLSETKHRLFIGNVPKTWTEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVLYYNN 239
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300
ACADYSRQKM +++FKLDGNTPT++WADPK++PDHS A+SQVKALYVKNIP+N +TE++K
Sbjct: 240 ACADYSRQKMASSSFKLDGNTPTVTWADPKNSPDHS-ASSQVKALYVKNIPENVTTEQLK 298
Query: 301 ELFQRHGEVTKVVMPPGKS-GKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359
ELF+RHGEVTKVVMPPGK+ GKRDFGFIHYAERSSALKAVKDTEKYEIDGQ+LEVVLAKP
Sbjct: 299 ELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKP 358
Query: 360 QTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPS 419
Q DKK +G + Y+PGL P H+PH YG F+G PYGS+G G+GVAAG+QQPMIYGRGPMP+
Sbjct: 359 QADKKPDGGYAYNPGLHPNHVPHPAYGNFSGNPYGSLGAGYGVAAGYQQPMIYGRGPMPA 418
Query: 420 GMHMVPMVLPDGQIGYVLQQP 440
GM MVPM+LPDG+IGYVL P
Sbjct: 419 GMQMVPMMLPDGRIGYVLNNP 439
>gi|255578218|ref|XP_002529977.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223530539|gb|EEF32420.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 557
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/470 (70%), Positives = 389/470 (82%), Gaps = 31/470 (6%)
Query: 1 MAESTEVEDRVDL-EEDNYMEEMDDDVEEQVEEDPEEEGGDGNFE-ENDDDEEYDHSKAG 58
MAE TEVE+RVDL EEDNYMEEM+DDVE+Q++ED +++ + + E + +E+ D SK
Sbjct: 1 MAEGTEVEERVDLDEEDNYMEEMEDDVEDQLDEDGDDDDDNRDANVEENAEEDDDDSKTE 60
Query: 59 ASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDA 118
S++DQS E R ++ +E++EKPTASV E+EK+KHAQLL+LPP+GSEVFIGGLPKDA
Sbjct: 61 GSQEDQSPEIARKCTNSEPLEDDEKPTASVNEEEKEKHAQLLSLPPHGSEVFIGGLPKDA 120
Query: 119 SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178
E+DLRDLCEPIGD+FE+RLMKDK++GESKGFAFV+FRSKE A+KAI+E+HSKE KGKT+
Sbjct: 121 LEDDLRDLCEPIGDIFEIRLMKDKDTGESKGFAFVAFRSKEVAQKAIEEIHSKEFKGKTL 180
Query: 179 RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYY 238
RCSLSETKNRLF+GNVPKNWTEDEFRKV+E+VGPGV+ IELI+DPQNPSRNRGF+FVLYY
Sbjct: 181 RCSLSETKNRLFVGNVPKNWTEDEFRKVVEEVGPGVDIIELIRDPQNPSRNRGFAFVLYY 240
Query: 239 NNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEK 298
NNACADYSRQKMLNANFKL+GNTPT+SWADPK TPD SAAA+QVKALYVKNIP+NTSTE+
Sbjct: 241 NNACADYSRQKMLNANFKLEGNTPTVSWADPKGTPDQSAAAAQVKALYVKNIPENTSTEQ 300
Query: 299 IKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
+KELFQRHGE AV+D EKY+IDGQVLEVVLAK
Sbjct: 301 LKELFQRHGE-----------------------------AVRDNEKYQIDGQVLEVVLAK 331
Query: 359 PQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMP 418
PQTDKK +G +PY L P+H+ H YGGFAG PY S+G GFGVA+ FQQP+IYGRGPMP
Sbjct: 332 PQTDKKPDGVYPYPAALHPSHVTHPAYGGFAGNPYSSLGGGFGVASSFQQPVIYGRGPMP 391
Query: 419 SGMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRRVDRSNGPGGRGGRGGSS 468
+GMHMVPMVLPDG+IGYVLQQPGVQMP PRPRRV+RSNG G G G +S
Sbjct: 392 AGMHMVPMVLPDGRIGYVLQQPGVQMPQPRPRRVERSNGSSGPGRAGKTS 441
>gi|357512617|ref|XP_003626597.1| RNA-binding protein [Medicago truncatula]
gi|355501612|gb|AES82815.1| RNA-binding protein [Medicago truncatula]
Length = 479
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 310/454 (68%), Positives = 384/454 (84%), Gaps = 6/454 (1%)
Query: 1 MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGAS 60
M+E E++DRVDL+E+NYMEEMDDDVEEQ+++D + G D N E + ++ EY+ + A A
Sbjct: 1 MSEGAEIDDRVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEETAAEAG 60
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120
+KDQ E ++D EE+E A + E+E++KH +LL+ PP+GSEVFIGGLP+D S+
Sbjct: 61 QKDQFPEGEKSDHGA---EEDELKPALIDEEEREKHDELLSRPPHGSEVFIGGLPRDTSD 117
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
+D+R+LCEP+GD+ E++L+KD+E+GESKG+AFV +++KE A+KAID++H+KE KGKT+RC
Sbjct: 118 DDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRC 177
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
LSETK+RLFIGN+PK WTEDEFRK +E VGPGVE+I+LIKDPQN SRNRGF+FVLYYNN
Sbjct: 178 LLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNN 237
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300
ACAD+SRQKM + FKLDG TPT++WADPK++PD SAAASQVKALYVKNIP+N +TE++K
Sbjct: 238 ACADFSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLK 297
Query: 301 ELFQRHGEVTKVVMPPGK-SGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359
ELF+RHGEVTKVVMPPGK SGKRDFGFIHYAERSSALKAVK+TEKYEIDGQ LEVV+AKP
Sbjct: 298 ELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKP 357
Query: 360 QTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGS--VGTGFGVAAGFQQPMIYGRGPM 417
Q +KK +G + Y+PGL P HLPH GYG F+G YGS G G AA +QQPMIYGRGPM
Sbjct: 358 QAEKKPDGGYAYNPGLHPNHLPHPGYGNFSGNLYGSVGAGYGVAAAAAYQQPMIYGRGPM 417
Query: 418 PSGMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRR 451
P+GM MVPMVLPDG+IGYVLQQPGVQ+P PRPRR
Sbjct: 418 PAGMQMVPMVLPDGRIGYVLQQPGVQVPGPRPRR 451
>gi|449431998|ref|XP_004133787.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
gi|449477982|ref|XP_004155183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
Length = 481
Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust.
Identities = 335/485 (69%), Positives = 407/485 (83%), Gaps = 7/485 (1%)
Query: 1 MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGAS 60
MA+ +EVE+RVDLEEDNYMEEMDDDVEE V+ED + G E D +E + + G
Sbjct: 1 MADGSEVEERVDLEEDNYMEEMDDDVEEHVDEDGVDRRA-GELPEEDVEEVSEEPQVGTD 59
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120
+D+ ++ +RN+ +E EK ++ + ED+ +KHAQLLALPP+GSEVFIGGL +D E
Sbjct: 60 TEDKFSD-DRNNLSVESIENREKSSSLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVLE 118
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
EDLRD+CE +G++FE+R++KDK+SGESKG+AF++F++KE A+KAI++LH KE+KGKTIRC
Sbjct: 119 EDLRDMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKGKTIRC 178
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
SLS++K+RLFIGNVPK+WT+DEFR++IE VGPGVE IELIKDPQNP+RNRGF+FVLYYNN
Sbjct: 179 SLSDSKHRLFIGNVPKSWTDDEFRRLIEGVGPGVENIELIKDPQNPNRNRGFAFVLYYNN 238
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300
ACADYSRQKM +ANFKLDGN+PT+SWADPKS PD+SAAA QVKALYVKNIP+NT+TE++K
Sbjct: 239 ACADYSRQKMSSANFKLDGNSPTVSWADPKSMPDNSAAA-QVKALYVKNIPENTTTEQLK 297
Query: 301 ELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
ELFQ+HGEVTKV MPPGK+G KRDF FIHYAERSSALKAVK+TEKYEI+GQ+LEVVLAK
Sbjct: 298 ELFQQHGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAK 357
Query: 359 PQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMP 418
PQ+DKK++G + + G P HL H GYGG+ G PYGS+G G+GV AGF QPMIYGRGPMP
Sbjct: 358 PQSDKKSDGAYSHISGSYPNHLLHGGYGGYGGNPYGSLG-GYGVTAGFHQPMIYGRGPMP 416
Query: 419 SGMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRRVDRSN-GPGGRGGRGGSSGGDDGNRGR 477
+GM MVPMVLPDG+IGYVLQQPGV MPP R RR +RSN G G GGSS DD NRGR
Sbjct: 417 AGMQMVPMVLPDGRIGYVLQQPGVPMPPSRSRRSERSNGSGGTMGRSGGSSSSDDVNRGR 476
Query: 478 RYRPY 482
RYRPY
Sbjct: 477 RYRPY 481
>gi|18411454|ref|NP_567192.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79324963|ref|NP_001031566.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13605916|gb|AAK32943.1|AF367357_1 AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|21360555|gb|AAM47474.1| AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|110743368|dbj|BAE99571.1| hypothetical protein [Arabidopsis thaliana]
gi|332656540|gb|AEE81940.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656541|gb|AEE81941.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 316/497 (63%), Positives = 400/497 (80%), Gaps = 17/497 (3%)
Query: 1 MAESTEVEDRVDLEEDNY--------MEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEY 52
M+++ + +DRVD EE +Y E++++ EE+ E+D +++ G+ N EE + E+Y
Sbjct: 1 MSDARDNDDRVDFEEGSYSEMEDEVEEEQVEEYEEEEEEDDDDDDVGNQNAEEREV-EDY 59
Query: 53 DHSKAGASE--KDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVF 110
+K G E +++ AE + N D +++EKP + + +++++K++ LL+LPP+GSEVF
Sbjct: 60 GDTKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPHGSEVF 119
Query: 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
IGGLP+D EEDLRDLCE IG++FEVRLMKD++SG+SKG+AFV+F++K+ A+KAI+ELHS
Sbjct: 120 IGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHS 179
Query: 171 KELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNR 230
KE KGKTIRCSLSETKNRLFIGN+PKNWTEDEFRKVIEDVGPGVE IELIKDP N +RNR
Sbjct: 180 KEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNR 239
Query: 231 GFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
GF+FVLYYNNACADYSRQKM+++NFKL+GN PT++WADPKS+P+HSAAA+QVKALYVKNI
Sbjct: 240 GFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNI 299
Query: 291 PDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ 350
P+NTSTE++KELFQRHGEVTK+V PPGK GKRDFGF+HYAERSSALKAVKDTE+YE++GQ
Sbjct: 300 PENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQ 359
Query: 351 VLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP--HAGYGGFAGTPYGSVGTGFGVAAGFQQ 408
LEVVLAKPQ ++K + + YS G PT P H +GGFA PYG++G G G+A F Q
Sbjct: 360 PLEVVLAKPQAERKHDPS-SYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQ 418
Query: 409 PMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQM---PPPRPRRVDRSNGPGGRGGRG 465
PMIYGRG MP+GM MVPM+LPDG++GYVLQQPG+ M PP RPRR DR+NG G GR
Sbjct: 419 PMIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPGMPMAAAPPQRPRRNDRNNGSSGGSGRD 478
Query: 466 GSSGGDDGNRGRRYRPY 482
S D GRRYRPY
Sbjct: 479 NSHEHDGNRGGRRYRPY 495
>gi|297814257|ref|XP_002875012.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297320849|gb|EFH51271.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 494
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 324/496 (65%), Positives = 399/496 (80%), Gaps = 16/496 (3%)
Query: 1 MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEG--------GDGNFEENDDDEEY 52
M+++ + +DRVD EE +Y E D+ EEQVEE EEE G+ N EE D E+Y
Sbjct: 1 MSDARDNDDRVDFEEGSYSEMEDEVEEEQVEEYEEEEEEDEDDDDRGNQNAEERDV-EDY 59
Query: 53 DHSKAGASE-KDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFI 111
+K G E +++ AE + N D +++EKP + + E+E++K++ LL+LPP+GSEVFI
Sbjct: 60 GDTKGGDMEAQEEIAEDDDNHIDIETADDDEKPASPIDEEEREKYSHLLSLPPHGSEVFI 119
Query: 112 GGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171
GGLP+D EEDLRDLCE IG++FEVRLMKD++SG+SKG+AFV+F++K+ A+KAI++LHSK
Sbjct: 120 GGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEDLHSK 179
Query: 172 ELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRG 231
E KGKTIRCSLSETKNRLFIGN+PKNWTEDEFRKVIE+VGPGVE IELIKDP N +RNRG
Sbjct: 180 EFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIENVGPGVENIELIKDPANTTRNRG 239
Query: 232 FSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIP 291
F+FVLYYNNACADYSRQKM+++NFKL+GN PT++WADPKS+P+HSAAA+QVKALYVKNIP
Sbjct: 240 FAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIP 299
Query: 292 DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQV 351
+NTSTE++KELFQRHGEVTK+V PPGK GKRDFGF+HYAERSSALKAVKDTE+YE++GQ
Sbjct: 300 ENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQP 359
Query: 352 LEVVLAKPQTDKKTEGTFPYSPGLVPTHLP--HAGYGGFAGTPYGSVGTGFGVAAGFQQP 409
LEVVLAKPQ ++K + + YS G P P H +GGFA PYG++G G G+A F QP
Sbjct: 360 LEVVLAKPQAERKHDPS-SYSYGAAPNPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQP 418
Query: 410 MIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQM---PPPRPRRVDRSNGPGGRGGRGG 466
MIYGRG MP+GM MVPM+LPDG++GYVLQQPG+QM PP RPRRVDR+NG G GR
Sbjct: 419 MIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPGMQMAAAPPARPRRVDRNNGSSGGSGRDN 478
Query: 467 SSGGDDGNRGRRYRPY 482
S D GRRYRPY
Sbjct: 479 SHEHDGNRGGRRYRPY 494
>gi|2252863|gb|AAB62861.1| similar to nucleolin protein [Arabidopsis thaliana]
gi|7267422|emb|CAB80892.1| putative protein [Arabidopsis thaliana]
Length = 521
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 316/523 (60%), Positives = 400/523 (76%), Gaps = 43/523 (8%)
Query: 1 MAESTEVEDRVDLEEDNY--------MEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEY 52
M+++ + +DRVD EE +Y E++++ EE+ E+D +++ G+ N EE + E+Y
Sbjct: 1 MSDARDNDDRVDFEEGSYSEMEDEVEEEQVEEYEEEEEEDDDDDDVGNQNAEEREV-EDY 59
Query: 53 DHSKAGASE--KDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVF 110
+K G E +++ AE + N D +++EKP + + +++++K++ LL+LPP+GSEVF
Sbjct: 60 GDTKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPHGSEVF 119
Query: 111 IGGLPKDASEEDLRDLCEPIGDVFEVR--------------LMKDKESGESKGFAFVSFR 156
IGGLP+D EEDLRDLCE IG++FEVR LMKD++SG+SKG+AFV+F+
Sbjct: 120 IGGLPRDVGEEDLRDLCEEIGEIFEVRTAIIFVFHDILFVRLMKDRDSGDSKGYAFVAFK 179
Query: 157 SKEFAKKAIDELHSKELK------------GKTIRCSLSETKNRLFIGNVPKNWTEDEFR 204
+K+ A+KAI+ELHSKE K GKTIRCSLSETKNRLFIGN+PKNWTEDEFR
Sbjct: 180 TKDVAQKAIEELHSKEFKASSTANCSLSLSGKTIRCSLSETKNRLFIGNIPKNWTEDEFR 239
Query: 205 KVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264
KVIEDVGPGVE IELIKDP N +RNRGF+FVLYYNNACADYSRQKM+++NFKL+GN PT+
Sbjct: 240 KVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTV 299
Query: 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDF 324
+WADPKS+P+HSAAA+QVKALYVKNIP+NTSTE++KELFQRHGEVTK+V PPGK GKRDF
Sbjct: 300 TWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDF 359
Query: 325 GFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP--H 382
GF+HYAERSSALKAVKDTE+YE++GQ LEVVLAKPQ ++K + + YS G PT P H
Sbjct: 360 GFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPS-SYSYGAAPTPAPFVH 418
Query: 383 AGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGV 442
+GGFA PYG++G G G+A F QPMIYGRG MP+GM MVPM+LPDG++GYVLQQPG+
Sbjct: 419 PTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPGM 478
Query: 443 QM---PPPRPRRVDRSNGPGGRGGRGGSSGGDDGNRGRRYRPY 482
M PP RPRR DR+NG G GR S D GRRYRPY
Sbjct: 479 PMAAAPPQRPRRNDRNNGSSGGSGRDNSHEHDGNRGGRRYRPY 521
>gi|334186262|ref|NP_001190647.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656542|gb|AEE81942.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 467
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 296/451 (65%), Positives = 365/451 (80%), Gaps = 17/451 (3%)
Query: 39 GDGNFEENDDDEEYDHSKAGASE--KDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKH 96
G+ N EE + E+Y +K G E +++ AE + N D +++EKP + + +++++K+
Sbjct: 27 GNQNAEEREV-EDYGDTKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKY 85
Query: 97 AQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFR 156
+ LL+LPP+GSEVFIGGLP+D EEDLRDLCE IG++FEVRLMKD++SG+SKG+AFV+F+
Sbjct: 86 SHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFK 145
Query: 157 SKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+K+ A+KAI+ELHSKE KGKTIRCSLSETKNRLFIGN+PKNWTEDEFRKVIEDVGPG
Sbjct: 146 TKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPG--- 202
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276
DP N +RNRGF+FVLYYNNACADYSRQKM+++NFKL+GN PT++WADPKS+P+HS
Sbjct: 203 -----DPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHS 257
Query: 277 AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
AAA+QVKALYVKNIP+NTSTE++KELFQRHGEVTK+V PPGK GKRDFGF+HYAERSSAL
Sbjct: 258 AAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSAL 317
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP--HAGYGGFAGTPYG 394
KAVKDTE+YE++GQ LEVVLAKPQ ++K + + YS G PT P H +GGFA PYG
Sbjct: 318 KAVKDTERYEVNGQPLEVVLAKPQAERKHDPS-SYSYGAAPTPAPFVHPTFGGFAAAPYG 376
Query: 395 SVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQM---PPPRPRR 451
++G G G+A F QPMIYGRG MP+GM MVPM+LPDG++GYVLQQPG+ M PP RPRR
Sbjct: 377 AMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPGMPMAAAPPQRPRR 436
Query: 452 VDRSNGPGGRGGRGGSSGGDDGNRGRRYRPY 482
DR+NG G GR S D GRRYRPY
Sbjct: 437 NDRNNGSSGGSGRDNSHEHDGNRGGRRYRPY 467
>gi|334186264|ref|NP_001190648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656543|gb|AEE81943.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 309/498 (62%), Positives = 393/498 (78%), Gaps = 19/498 (3%)
Query: 1 MAESTEVEDRVDLEEDNY--------MEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEY 52
M+++ + +DRVD EE +Y E++++ EE+ E+D +++ G+ N EE + E+Y
Sbjct: 1 MSDARDNDDRVDFEEGSYSEMEDEVEEEQVEEYEEEEEEDDDDDDVGNQNAEEREV-EDY 59
Query: 53 DHSKAGASE--KDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVF 110
+K G E +++ AE + N D +++EKP + + +++++K++ LL+LPP+GSEVF
Sbjct: 60 GDTKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPHGSEVF 119
Query: 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
IGGLP+D EEDLRDLCE IG++FEVRLMKD++SG+SKG+AFV+F++K+ A+KAI+ELHS
Sbjct: 120 IGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHS 179
Query: 171 KELKGK-TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRN 229
KE K T CSLS NRLFIGN+PKNWTEDEFRKVIEDVGPGVE IELIKDP N +RN
Sbjct: 180 KEFKASSTANCSLS-LSNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRN 238
Query: 230 RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKN 289
RGF+FVLYYNNACADYSRQKM+++NFKL+GN PT++WADPKS+P+HSAAA+QVKALYVKN
Sbjct: 239 RGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKN 298
Query: 290 IPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
IP+NTSTE++KELFQRHGEVTK+V PPGK GKRDFGF+HYAERSSALKAVKDTE+YE++G
Sbjct: 299 IPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNG 358
Query: 350 QVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP--HAGYGGFAGTPYGSVGTGFGVAAGFQ 407
Q LEVVLAKPQ ++K + + YS G PT P H +GGFA PYG++G G G+A F
Sbjct: 359 QPLEVVLAKPQAERKHDPS-SYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFS 417
Query: 408 QPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQM---PPPRPRRVDRSNGPGGRGGR 464
QPMIYGRG MP+GM MVPM+LPDG++GYVLQQPG+ M PP RPRR DR+NG G GR
Sbjct: 418 QPMIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPGMPMAAAPPQRPRRNDRNNGSSGGSGR 477
Query: 465 GGSSGGDDGNRGRRYRPY 482
S D GRRYRPY
Sbjct: 478 DNSHEHDGNRGGRRYRPY 495
>gi|224068117|ref|XP_002302667.1| predicted protein [Populus trichocarpa]
gi|222844393|gb|EEE81940.1| predicted protein [Populus trichocarpa]
Length = 394
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 287/483 (59%), Positives = 342/483 (70%), Gaps = 90/483 (18%)
Query: 1 MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGAS 60
MAE TE+E+RVDLEEDNYMEE+DDDV++Q++ED E++ GD + EEN ++E D G
Sbjct: 1 MAEGTEIEERVDLEEDNYMEEIDDDVQDQLDEDGEDDAGDAHAEENVEEEYEDSKPEGK- 59
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120
EKDKHAQLL+LPP+GSEVFIGGLPKD E
Sbjct: 60 -------------------------------EKDKHAQLLSLPPHGSEVFIGGLPKDVIE 88
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
++LRDLCE IG++FE+RLMKDK++GESKGFAFV+F+SKE A+KA +EL SK+ KGKT+RC
Sbjct: 89 DELRDLCETIGEIFEIRLMKDKDTGESKGFAFVAFKSKEVARKATEELRSKDYKGKTLRC 148
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
S+SETKNRLFIGNVPKN TEDEFRK+IE+VGPG+E +ELIKDPQ P+RNRGF+F+LYYNN
Sbjct: 149 SISETKNRLFIGNVPKNLTEDEFRKIIEEVGPGMEVLELIKDPQTPTRNRGFAFILYYNN 208
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQVKALYVKNIPDNTSTEKI 299
ACADYSRQKMLNANFKLDG+TPT+SWADPK PDHS AA+ TEK
Sbjct: 209 ACADYSRQKMLNANFKLDGHTPTVSWADPKGMPPDHSPAAAGQAV---------RDTEK- 258
Query: 300 KELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359
++ G++ +VV LAKP
Sbjct: 259 ---YEIDGQLLEVV------------------------------------------LAKP 273
Query: 360 QTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPS 419
Q DKK +G++PY+ G+ P +P Y GFAG P+GS+GTGFGVAAGFQQP+IYGRGPMP+
Sbjct: 274 QADKKPDGSYPYNAGVNPNPVPLPAYSGFAGNPHGSLGTGFGVAAGFQQPVIYGRGPMPA 333
Query: 420 GMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRRVDRSNGPGGRGGRGGSSGGDDGNRGRRY 479
GMHMVPMVLPDG+IGYVLQQPGVQMP P+PRRVDRSN P G GR GSS GDDGNRGRRY
Sbjct: 334 GMHMVPMVLPDGRIGYVLQQPGVQMPQPQPRRVDRSNSPSGP-GRAGSS-GDDGNRGRRY 391
Query: 480 RPY 482
RPY
Sbjct: 392 RPY 394
>gi|255578939|ref|XP_002530322.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223530126|gb|EEF32038.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 481
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/399 (57%), Positives = 305/399 (76%), Gaps = 14/399 (3%)
Query: 89 GEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESK 148
G+DE+ KHA+LLALPP+GSEV++GG+P DASE+DLR CE IG+V EVR+MK K S ++K
Sbjct: 92 GQDEERKHAELLALPPHGSEVYLGGIPIDASEQDLRHFCESIGEVTEVRIMKGKASSDTK 151
Query: 149 GFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIE 208
G+AFV+FRSKE A KAI++L++ E KG+ I+CS S+ +RLF+GNVP++W E + +V+
Sbjct: 152 GYAFVTFRSKELASKAIEQLNNTEFKGRKIKCSTSQANHRLFLGNVPRDWEEKDMMQVVM 211
Query: 209 DVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWAD 268
+GPGV ++EL+KDPQN SRNRGF+F+ YYN+ACADYSR+KM N FKLD N PT+SWAD
Sbjct: 212 KIGPGVISVELLKDPQNSSRNRGFAFIEYYNHACADYSRKKMSNPQFKLDDNAPTVSWAD 271
Query: 269 PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGF 326
PK+ S+AASQVKA+YVKN+P + + +++++LF+RHG+VTKVV+PP K+G + F F
Sbjct: 272 PKNA--GSSAASQVKAVYVKNLPHDITQDRLRQLFERHGKVTKVVVPPAKAGHERSRFAF 329
Query: 327 IHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLV-PTHLPHAGY 385
+H+AERSSA+KA+K+TEKYEIDGQVLE LAKPQ D+K+ G ++ PT P GY
Sbjct: 330 VHFAERSSAMKALKNTEKYEIDGQVLECSLAKPQADQKSSGGSNLQKSVLHPTFPPRLGY 389
Query: 386 GGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGV--Q 443
G GT YG++G G+G A F QPMIYGRGP P+G+ M+PM+LPDG+IGYV+QQPG+ Q
Sbjct: 390 GLVGGT-YGALGAGYG--ASFAQPMIYGRGPTPAGISMMPMLLPDGRIGYVMQQPGMQPQ 446
Query: 444 MPPPRPRRVDRSNGPGGRGGRGGSSGGDDGNRGRRYRPY 482
PP +PR + G G ++ NRGRRY PY
Sbjct: 447 TPPSQPRAGRGGS----AGSSSGGRRSNENNRGRRYNPY 481
>gi|224104859|ref|XP_002313595.1| predicted protein [Populus trichocarpa]
gi|222850003|gb|EEE87550.1| predicted protein [Populus trichocarpa]
Length = 489
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 231/425 (54%), Positives = 315/425 (74%), Gaps = 24/425 (5%)
Query: 68 ANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLC 127
+N N D VE+E DE+ K+ +LLA PP+GSEV+IGG+P DASEEDLRD C
Sbjct: 79 SNANAGDETKVEDE---------DEQKKYDELLARPPHGSEVYIGGIPNDASEEDLRDFC 129
Query: 128 EPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
E +G+V EVR+M++K+S E++GFAFV+FRS + A AI EL++ E KGK I+CS S+ K+
Sbjct: 130 ESVGEVTEVRIMREKDSSENRGFAFVTFRSVDLASTAIGELNNTEFKGKKIKCSTSQAKH 189
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
RLF+ N+P++W ED RK++ +VGPGV ++L+K+ ++ S NRG++F+ YYNNACA+YSR
Sbjct: 190 RLFLSNIPRSWGEDGLRKIVAEVGPGVTNVQLVKE-KSSSNNRGYAFIEYYNNACAEYSR 248
Query: 248 QKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
QKM++ FKL N P +SWADPK+ S+A+SQVKALYVKN+P + +++K+LF+RHG
Sbjct: 249 QKMMDPKFKLGDNAPAVSWADPKNA--DSSASSQVKALYVKNLPKTVTQDQLKKLFERHG 306
Query: 308 EVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKT 365
++TKVV+PP KSG K GF+H+AERSSA+KA+KDTEKYE+DGQ++E LAKPQ+++K
Sbjct: 307 KITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKDTEKYELDGQLVECALAKPQSEQKA 366
Query: 366 E-GTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGF-QQPMIYGRGPMPSGMHM 423
G+ + GL+P + P GY G G YG++G G+ V AGF QQP+IYG GP P+GM M
Sbjct: 367 AGGSNLQNTGLLPGYPPGVGY-GMMGNAYGALGAGY-VTAGFAQQPLIYGSGPSPAGMAM 424
Query: 424 VPMVLPDGQIGYVLQQPGVQMPPPRP-RRVDRSNGPGGRGGR-GGSSG----GDDGNRGR 477
+PM+LPDGQ GYVLQQPGVQ+ P +R D +G GGRG + GGSS +D G+
Sbjct: 425 MPMLLPDGQFGYVLQQPGVQLHSPTSYQRNDSRSGSGGRGNKMGGSSNRGRHSNDSGHGQ 484
Query: 478 RYRPY 482
R+RPY
Sbjct: 485 RFRPY 489
>gi|224131824|ref|XP_002328117.1| predicted protein [Populus trichocarpa]
gi|222837632|gb|EEE75997.1| predicted protein [Populus trichocarpa]
Length = 419
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/426 (53%), Positives = 311/426 (73%), Gaps = 15/426 (3%)
Query: 65 SAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLR 124
++ AN D + H +E K EDEK KHA+LLA PP+GSEV+IGG+P DASEEDL+
Sbjct: 1 ASNANGGDIQSSHQGDEAKVE---DEDEKKKHAELLARPPHGSEVYIGGVPNDASEEDLK 57
Query: 125 DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184
D CE +G+V EVR+MK K+S ++KGFAFV+FRS + A KAI EL++ E KGK I+CS S+
Sbjct: 58 DFCESVGEVTEVRMMKGKDSSDNKGFAFVTFRSVDLATKAIGELNNTEFKGKRIKCSTSQ 117
Query: 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
K+RLF+ N+P++W E++ K + +VGPG ++L+K ++ S NRG++FV YYNNACA+
Sbjct: 118 AKHRLFLSNIPRSWGEEDLSKFVAEVGPGTTNVQLVKVSESSSNNRGYAFVEYYNNACAE 177
Query: 245 YSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ 304
YSRQKM++ FKL N P++SWADPK+ S+ +SQVKA+YVKN+P + +++K+LF+
Sbjct: 178 YSRQKMIDPKFKLGDNAPSVSWADPKNA--DSSTSSQVKAIYVKNLPKTVTQDQLKKLFE 235
Query: 305 RHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362
RHG++TKVV+PP KSG K GF+H+AERSSA+KA+KDTEKYE++GQ +E LAKPQ++
Sbjct: 236 RHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKDTEKYELNGQSVECALAKPQSE 295
Query: 363 KK-TEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGM 421
+K G+ GL+P + P GY G G+ YG++G G+ VA GF QP+IYG GP P+GM
Sbjct: 296 QKPAGGSNLQRAGLLPAYPPGVGY-GMMGSAYGALGAGY-VATGFTQPLIYGSGPAPAGM 353
Query: 422 HMVPMVLPDGQIGYVLQQPGVQMPPPRPRRVDRSNGPGGRGGR--GGSSGG---DDGNRG 476
M+PM+LPDGQ GYVLQQPGVQ+ P + + S GRG + G SS G D + G
Sbjct: 354 AMMPMLLPDGQFGYVLQQPGVQLHSPTSYQRNDSRSGSGRGNKMVGSSSRGRQRSDASHG 413
Query: 477 RRYRPY 482
RR+RPY
Sbjct: 414 RRFRPY 419
>gi|225464938|ref|XP_002275366.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Vitis
vinifera]
Length = 503
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 231/417 (55%), Positives = 303/417 (72%), Gaps = 16/417 (3%)
Query: 78 VEEEEKPTASVG----EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDV 133
+E++ P+ G EDE KHA+LLALPP+GSEV++GG+ +DASEEDL+ CE +G+V
Sbjct: 91 ADEQKSPSGGGGKIEDEDESKKHAELLALPPHGSEVYVGGISQDASEEDLKSFCESVGEV 150
Query: 134 FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGN 193
EVR+MK K+SGE+KGFAFV+FR+ E A KAI+EL++ E KG+ I+CS S+ K+RLFIGN
Sbjct: 151 TEVRIMKGKDSGENKGFAFVTFRNVELASKAIEELNNTEFKGRKIKCSTSQAKHRLFIGN 210
Query: 194 VPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253
VP++W E++ +KV+ ++GPGV +EL+KD +N S NRGF+F+ YYN+ACA+YSRQKM+N
Sbjct: 211 VPRSWGEEDIKKVVTEIGPGVTAVELVKDMKNSSNNRGFAFIDYYNHACAEYSRQKMMNP 270
Query: 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVV 313
FKLD N PT+SWADPK+ S+ ASQVKA+YVKN+P N + +++K+LF+ HG++TKVV
Sbjct: 271 KFKLDNNAPTVSWADPKNA--DSSPASQVKAVYVKNLPKNITQDQLKQLFEHHGKITKVV 328
Query: 314 MPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE-GTFP 370
+PP KSG K GF+H+AERSSA+KA+K+TEKYEIDGQVLE LAKPQ D+K+ G+
Sbjct: 329 LPPAKSGQEKSRIGFVHFAERSSAMKALKNTEKYEIDGQVLECSLAKPQADQKSVGGSNS 388
Query: 371 YSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPD 430
GL+ ++ P GYG G AGF QP+IYGRGP P+GM M+PM+LPD
Sbjct: 389 QKSGLLSSYPPRVGYGFVGGA--YGALGAGYGTAGFAQPLIYGRGPTPAGMAMMPMLLPD 446
Query: 431 GQIGYVLQQPGVQ--MPPPRPRRVDRSNGPGGRGGRGGSSG---GDDGNRGRRYRPY 482
G+IGYVLQQPG Q PP R R G G SS +DG GRRY PY
Sbjct: 447 GRIGYVLQQPGAQPHTPPSHQRSSGRGGSGSGSKSGGSSSRGRHNNDGGHGRRYHPY 503
>gi|296084906|emb|CBI28315.3| unnamed protein product [Vitis vinifera]
Length = 434
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 225/396 (56%), Positives = 293/396 (73%), Gaps = 12/396 (3%)
Query: 95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
KHA+LLALPP+GSEV++GG+ +DASEEDL+ CE +G+V EVR+MK K+SGE+KGFAFV+
Sbjct: 43 KHAELLALPPHGSEVYVGGISQDASEEDLKSFCESVGEVTEVRIMKGKDSGENKGFAFVT 102
Query: 155 FRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
FR+ E A KAI+EL++ E KG+ I+CS S+ K+RLFIGNVP++W E++ +KV+ ++GPGV
Sbjct: 103 FRNVELASKAIEELNNTEFKGRKIKCSTSQAKHRLFIGNVPRSWGEEDIKKVVTEIGPGV 162
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+EL+KD +N S NRGF+F+ YYN+ACA+YSRQKM+N FKLD N PT+SWADPK+
Sbjct: 163 TAVELVKDMKNSSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDNNAPTVSWADPKNA-- 220
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAER 332
S+ ASQVKA+YVKN+P N + +++K+LF+ HG++TKVV+PP KSG K GF+H+AER
Sbjct: 221 DSSPASQVKAVYVKNLPKNITQDQLKQLFEHHGKITKVVLPPAKSGQEKSRIGFVHFAER 280
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE-GTFPYSPGLVPTHLPHAGYGGFAGT 391
SSA+KA+K+TEKYEIDGQVLE LAKPQ D+K+ G+ GL+ ++ P GYG G
Sbjct: 281 SSAMKALKNTEKYEIDGQVLECSLAKPQADQKSVGGSNSQKSGLLSSYPPRVGYGFVGGA 340
Query: 392 PYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQ--MPPPRP 449
AGF QP+IYGRGP P+GM M+PM+LPDG+IGYVLQQPG Q PP
Sbjct: 341 --YGALGAGYGTAGFAQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGAQPHTPPSHQ 398
Query: 450 RRVDRSNGPGGRGGRGGSSG---GDDGNRGRRYRPY 482
R R G G SS +DG GRRY PY
Sbjct: 399 RSSGRGGSGSGSKSGGSSSRGRHNNDGGHGRRYHPY 434
>gi|224088555|ref|XP_002308472.1| predicted protein [Populus trichocarpa]
gi|222854448|gb|EEE91995.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/380 (58%), Positives = 298/380 (78%), Gaps = 14/380 (3%)
Query: 79 EEEEKPTASVG---EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE 135
+E + P S G EDE KH++LLALPP+GSEV++GG+P DASEEDL++ CE IG+V E
Sbjct: 37 DEADSPKGSDGDEEEDEHRKHSELLALPPHGSEVYLGGIPPDASEEDLKEFCESIGEVTE 96
Query: 136 VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVP 195
+R+MK K+S ESKG+AFV+FR+KE A KAI+EL++ E KGK ++CS S+ +RLFIGNVP
Sbjct: 97 IRIMKGKDSSESKGYAFVTFRTKELASKAIEELNNTEFKGKKVKCSTSQANHRLFIGNVP 156
Query: 196 KNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANF 255
+NW E++ +K ++ GPGV ++EL+KDPQNPSRNRGF+F+ YYN+ACA+YSR+ M + F
Sbjct: 157 RNWGEEDMKKAVKKTGPGVNSVELLKDPQNPSRNRGFAFIEYYNHACAEYSRKMMSSPEF 216
Query: 256 KLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP 315
KLD N PT+SWADPK+ S+AASQVKA+YVKN+P++ + +++++LF+ HG+VTKVV+P
Sbjct: 217 KLDDNAPTVSWADPKNA--GSSAASQVKAVYVKNLPEDINQDRLRQLFEHHGKVTKVVLP 274
Query: 316 PGKSG--KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSP 373
P K G K FGF+H+AERSSA+KA+K+TEKY+IDGQVL+ LAKPQ D K+ G P S
Sbjct: 275 PAKPGHEKSRFGFVHFAERSSAMKALKNTEKYKIDGQVLDCSLAKPQADLKSSGG-PNSQ 333
Query: 374 GLVP--THLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDG 431
P + P GY G+ YG++G G AAGF QP+IYGRGP P+GM M+PM+LPDG
Sbjct: 334 KSSPHSSFPPRVGY-SLVGSSYGALGAG-FGAAGFAQPVIYGRGPTPAGMSMMPMLLPDG 391
Query: 432 QIGYVLQQPGVQM--PPPRP 449
+IGYVLQQPG+QM PPP+P
Sbjct: 392 RIGYVLQQPGMQMHSPPPQP 411
>gi|62733051|gb|AAX95168.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
[Oryza sativa Japonica Group]
gi|77549578|gb|ABA92375.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|222615796|gb|EEE51928.1| hypothetical protein OsJ_33542 [Oryza sativa Japonica Group]
Length = 465
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 244/391 (62%), Positives = 301/391 (76%), Gaps = 16/391 (4%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K K +LLALPP GSEVFIGGLP+D +EEDLR+LC+ G+++EVRLMKDKE+ E+KGFAF
Sbjct: 90 KRKWDELLALPPQGSEVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAF 149
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP 212
V+F +KE A++AI+ELH KE KG+T+RCSLS+ K+RLF+GNVPK E+E RK+I+ GP
Sbjct: 150 VNFTAKEAAQRAIEELHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLGEEELRKIIQGKGP 209
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
GV IE+ KD +PSRNRGF FV YYN+ACADY+RQK+ NFK+DG+ T+SWA+PK +
Sbjct: 210 GVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYARQKLSAPNFKVDGSQLTVSWAEPKGS 269
Query: 273 PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAE 331
D S+AA+QVK +YVKN+P+N S EKIKE+F++HGEVTKVV+PP K G KRDFGF+H+AE
Sbjct: 270 SDSSSAAAQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAE 329
Query: 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGT 391
RSSALKAVK +EKYE +GQVLEV +AKP DKK + +F P P P YGG+ G
Sbjct: 330 RSSALKAVKGSEKYEFNGQVLEVSMAKPLGDKKPDHSF--KPAGAPN-FPLPPYGGYMGD 386
Query: 392 PYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRR 451
PYG+ G GF QPMIYGRGP P+GM MVPMVLPDG++GYVLQQPG PPP RR
Sbjct: 387 PYGAYGG---GGPGFNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGIPPPPPMRR 443
Query: 452 VDRSNGPGGRGGRGGSSGGDDGNRGRRYRPY 482
DR +G G RGG +G+ GRRYRPY
Sbjct: 444 GDRRDG-GSRGG--------EGSHGRRYRPY 465
>gi|125533975|gb|EAY80523.1| hypothetical protein OsI_35702 [Oryza sativa Indica Group]
Length = 468
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 243/391 (62%), Positives = 301/391 (76%), Gaps = 16/391 (4%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K K +LLALPP GSEVFIGGLP+D +EEDLR+LC+ G+++EVRLMKDKE+ E+KGFAF
Sbjct: 93 KRKWDELLALPPQGSEVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAF 152
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP 212
V+F +K+ A++AI+ELH KE KG+T+RCSLS+ K+RLF+GNVPK E+E RK+I+ GP
Sbjct: 153 VNFTAKDAAQRAIEELHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLGEEELRKIIQGKGP 212
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
GV IE+ KD +PSRNRGF FV YYN+ACADY+RQK+ NFK+DG+ T+SWA+PK +
Sbjct: 213 GVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYARQKLSAPNFKVDGSQLTVSWAEPKGS 272
Query: 273 PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAE 331
D S+AA+QVK +YVKN+P+N S EKIKE+F++HGEVTKVV+PP K G KRDFGF+H+AE
Sbjct: 273 SDSSSAAAQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAE 332
Query: 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGT 391
RSSALKAVK +EKYE DGQVLEV +AKP DKK + +F P P + P YG + G
Sbjct: 333 RSSALKAVKGSEKYEFDGQVLEVSMAKPLGDKKPDHSF--KPAGAP-NFPLPPYGAYMGD 389
Query: 392 PYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRR 451
PYG+ G GF QPMIYGRGP P+GM MVPMVLPDG++GYVLQQPG PPP RR
Sbjct: 390 PYGAYGG---GGPGFNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGIPPPPPMRR 446
Query: 452 VDRSNGPGGRGGRGGSSGGDDGNRGRRYRPY 482
DR +G G RGG +G+ GRRYRPY
Sbjct: 447 GDRRDG-GSRGG--------EGSHGRRYRPY 468
>gi|326497929|dbj|BAJ94827.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 469
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/366 (61%), Positives = 286/366 (78%), Gaps = 12/366 (3%)
Query: 79 EEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL 138
+E EK E+EK K +LLALPP GSEVF+GGLP+D +EEDLR LCEP+G++FEVRL
Sbjct: 81 DEMEKGDGPEDEEEKMKWEELLALPPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRL 140
Query: 139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW 198
MKDKE+ E+KGFAFV+F +K+ A+ AI+ELH K+ KG+T+RCSLS+ K+RLF+GNVPK
Sbjct: 141 MKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGL 200
Query: 199 TEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258
+E+E +I+ GPGV IE+ KD NPSRNRGF FV YYN+ACADY+RQK+ + +FK+D
Sbjct: 201 SEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHACADYARQKLSSPDFKVD 260
Query: 259 GNTPTISWADPKSTPDHSAA----ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVM 314
G+ T+SWA+PK + S+ A+QVK +YVKN+P+N S EK+K+LF+ HGEVTK+V+
Sbjct: 261 GSQLTVSWAEPKGSSSSSSDSSSPAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVL 320
Query: 315 PPGKSG-KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSP 373
PP K+G KRDFGF+H+AERSSALKAVK +EKYEIDGQVLEV +AKP +DKK + +F P
Sbjct: 321 PPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDHSF--KP 378
Query: 374 GLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQI 433
G P++ P YGG+ G PYG+ G GF QPMIYGRGP P+GM MVPMVLPDG++
Sbjct: 379 GGAPSY-PLPPYGGYMGDPYGAYGG----GPGFNQPMIYGRGPAPAGMRMVPMVLPDGRL 433
Query: 434 GYVLQQ 439
GYVLQQ
Sbjct: 434 GYVLQQ 439
>gi|356542760|ref|XP_003539833.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Glycine
max]
Length = 509
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 221/403 (54%), Positives = 294/403 (72%), Gaps = 15/403 (3%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
EDEK KHA+LL+LPP+GSEV+IGG+P AS+EDL+ LCE IG+V EVR+MK K+S E+KG
Sbjct: 112 EDEKRKHAELLSLPPHGSEVYIGGIP-HASDEDLKSLCERIGEVAEVRIMKGKDSSENKG 170
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
F FV+F S E A KAI+EL++ E GK I+CS S+ K+RLFIGNVP++W ++ +K++ +
Sbjct: 171 FGFVTFTSVELASKAIEELNNTEFMGKKIKCSKSQAKHRLFIGNVPRSWGVEDLKKIVTE 230
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
+GPGV +EL+KD +N + NRGF+F+ YYN+ACA+YSRQKM++ FKL N PT+SWADP
Sbjct: 231 IGPGVTGVELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKMMSPTFKLGENAPTVSWADP 290
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFI 327
K+ S+AASQVKA+YVKN+P N + E++K+LF+RHG++TKVV+PP KSG K GF+
Sbjct: 291 KNA--ESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFV 348
Query: 328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEG--TFPYSPGLVPTHLPHAGY 385
H+AERS+A+KA+K+TE+YE++GQ+LE LAKPQ D+K+ G T PGL+P++ PH GY
Sbjct: 349 HFAERSNAMKALKNTERYELEGQLLECSLAKPQADQKSGGSNTQKPGPGLLPSYPPHVGY 408
Query: 386 GGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGV--Q 443
G G A G QP++YG G P+GM M+PM+L DG+IGYVLQQPG+ Q
Sbjct: 409 GLVGGA--YGALGAGYAAPGLAQPLLYGGGQTPAGMAMMPMLLADGRIGYVLQQPGMQPQ 466
Query: 444 MPPPRPRRVDRSNGPGGRGGRGGSSG----GDDGNRGRRYRPY 482
PP R G G GSS +DG GRRYRPY
Sbjct: 467 APPSHHRGGRGGGGSGSGNRNAGSSSKGRHNNDGGHGRRYRPY 509
>gi|212275376|ref|NP_001130564.1| uncharacterized protein LOC100191663 [Zea mays]
gi|194689494|gb|ACF78831.1| unknown [Zea mays]
gi|219887513|gb|ACL54131.1| unknown [Zea mays]
gi|238010456|gb|ACR36263.1| unknown [Zea mays]
gi|413921450|gb|AFW61382.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921451|gb|AFW61383.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921452|gb|AFW61384.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921453|gb|AFW61385.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 467
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 231/395 (58%), Positives = 295/395 (74%), Gaps = 17/395 (4%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E+E+ K +LALPP+GSEVFIGGLP+D +EEDLR+LCEP+G+++EVRL KDK++ E+KG
Sbjct: 88 EEERSKWDDMLALPPHGSEVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKG 147
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
FAFV+F KE A++AI+++ +E KG+T+RCSLS+ K+RLF+GNVPK +E+E I+
Sbjct: 148 FAFVTFMDKEAAQRAIEDVQDREFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKG 207
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
GPGV IE+ KD +P+RNRGF FV YYN+ACADY+RQK+ + NFK+DG+ T+SWA+P
Sbjct: 208 KGPGVINIEMFKDQHDPNRNRGFLFVEYYNHACADYARQKLSSPNFKVDGSQLTVSWAEP 267
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIH 328
K + D S+AA+QVK +YVKN+P+N S EKIK+LF +HGEVTK+V+PP K+G KRDFGF+H
Sbjct: 268 KGSTDASSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKRDFGFVH 327
Query: 329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGF 388
+AERSSALKAVK +EKYEIDGQVLEV +AKP DKK + + + PG P + G
Sbjct: 328 FAERSSALKAVKGSEKYEIDGQVLEVSMAKPLADKKPDHS--HRPGGGPNY--PLPPYGG 383
Query: 389 AGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMPPPR 448
G G G + QPMIYGRGP P+GM MVPMVLPDG++GYVLQQPG PPP
Sbjct: 384 GGYMGDPYGAYGGGGPAYNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGMPPPPP 443
Query: 449 PRRV-DRSNGPGGRGGRGGSSGGDDGNRGRRYRPY 482
PRR DR + GRGG G S RRYRPY
Sbjct: 444 PRRGSDRRD--SGRGGEGHS---------RRYRPY 467
>gi|357144466|ref|XP_003573302.1| PREDICTED: APOBEC1 complementation factor-like [Brachypodium
distachyon]
Length = 476
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 231/398 (58%), Positives = 294/398 (73%), Gaps = 20/398 (5%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+DEK K +LLALP G EVFIGGLP+D +EEDLR+LCEP+G++ EVRLMKDK++ E+KG
Sbjct: 94 DDEKRKWDELLALPQQGCEVFIGGLPRDTTEEDLRELCEPLGEIHEVRLMKDKDTKENKG 153
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
FAFV+F +K+ A++AI+ELH K+ KG+T+RCSLS+ K+RLF+GNVPK +EDE +I+
Sbjct: 154 FAFVTFTAKDVAQRAIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELTSIIKG 213
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
GPGV IE+ KD +PSRNRGF FV YYN+ACADYSRQK+ + +FK+DG+ T+SWA+P
Sbjct: 214 KGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYSRQKLSSPDFKVDGSQLTVSWAEP 273
Query: 270 K----STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDF 324
K S+ D S++A+QVK +YVKN+P+N S EK+K+LF+ HGEVTK+V+PP K+G KRDF
Sbjct: 274 KGSSSSSSDSSSSAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDF 333
Query: 325 GFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAG 384
GF+H+AERSSALKAVK +EKYEIDGQVLEV +AKP +DKK + + PG P + P
Sbjct: 334 GFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDHSV--RPGGPPNY-PLPP 390
Query: 385 YGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQM 444
YGG+ G G G GF QPMIYGRGP P+GM MVPMVLPDG++GYVLQQPG
Sbjct: 391 YGGYMGD---PYGAYGGGGPGFNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGMP 447
Query: 445 PPPRPRRVDRSNGPGGRGGRGGSSGGDDGNRGRRYRPY 482
P R G +G+ GRRYRPY
Sbjct: 448 ---------PPPPPRRGDRRDGGGRSGEGSHGRRYRPY 476
>gi|255565651|ref|XP_002523815.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223536903|gb|EEF38541.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 489
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/400 (54%), Positives = 293/400 (73%), Gaps = 15/400 (3%)
Query: 91 DEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF 150
+E+ HA+LLA PP+GSEV+IGG+P DASEEDLR CE +G+V EVRLMK K+S E+K F
Sbjct: 97 NERKNHAELLARPPHGSEVYIGGIPHDASEEDLRGFCESVGEVTEVRLMKGKDSNENKRF 156
Query: 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDV 210
AFV+FRS + A KAIDEL++ E KGK I+CS ++ K RLF+GN+P++W E++ RKV+ +V
Sbjct: 157 AFVTFRSVDLASKAIDELNNTEFKGKRIKCSTAQAKYRLFLGNIPRSWKEEDLRKVVAEV 216
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
GPGV ++L+KD + S N+GF+F+ YYN ACA+YSRQKM+N +FKL N PT+SWA+PK
Sbjct: 217 GPGVTAVQLVKDMKT-SNNKGFAFIDYYNTACAEYSRQKMVNPDFKLGDNAPTVSWAEPK 275
Query: 271 STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIH 328
+ S+A+SQVKA+YVKN+P N + +++K+LF+ HG++TKVV+PP K G K GF+H
Sbjct: 276 NA--DSSASSQVKAIYVKNLPKNVTQDQLKKLFEHHGKITKVVLPPAKPGQEKNRIGFVH 333
Query: 329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY-SPGLVPTHLPHAGYGG 387
+AERSSA+KA+K+TE+YE+DGQV+E LAKPQ D+K+ G +PGL+P++ P G
Sbjct: 334 FAERSSAMKALKNTERYELDGQVVECSLAKPQADQKSVGVSNLQNPGLLPSYPPGGG--- 390
Query: 388 FAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQ--MP 445
G G+ G QP+IYGRGP P+GM M+PM+LPDG+IGYVLQQPGVQ P
Sbjct: 391 -YGLIGGAFGALGAGYGAVAQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGVQPHTP 449
Query: 446 PPRPRRVDRS---NGPGGRGGRGGSSGGDDGNRGRRYRPY 482
P R R+ GG G G+DG+ GRRYRPY
Sbjct: 450 PSHHRNNSRNSSGVASRSGGGSGRGRQGNDGSNGRRYRPY 489
>gi|115481176|ref|NP_001064181.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|18425248|gb|AAL69426.1|AC098565_8 Putative RNA-binding protein [Oryza sativa]
gi|31430199|gb|AAP52145.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113638790|dbj|BAF26095.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|125574047|gb|EAZ15331.1| hypothetical protein OsJ_30749 [Oryza sativa Japonica Group]
Length = 472
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 245/396 (61%), Positives = 304/396 (76%), Gaps = 18/396 (4%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E+EK K +LLALPP GSEVFIGGLP+D +E+DL +LCE G++ EVRLMKDKE+ E+KG
Sbjct: 92 EEEKRKWDELLALPPQGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKG 151
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
FAFV+F K+ A++AI++LH KE KG+T+RCSLS+ K+RLF+GNVPK +EDE R +I+
Sbjct: 152 FAFVTFTGKDGAQRAIEDLHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELRNIIQG 211
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
GPGV IE+ KD +PSRNRGF FV YYN+ACADY++QK+ NFK+DG+ T+SWA+P
Sbjct: 212 KGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAEP 271
Query: 270 K--STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGF 326
K S+ D S+AA+QVK +YVKN+P+N S EKIKE+F+ HGEVTKVV+PP K+G KRDFGF
Sbjct: 272 KGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRDFGF 331
Query: 327 IHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYG 386
+H+AERSSALKAVK +EKYEIDGQVLEV +AKP DKK + +F PG P + P YG
Sbjct: 332 VHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLGDKKPDHSF--KPGGAP-NFPLPPYG 388
Query: 387 GFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMPP 446
G+ G PYG+ G GF QPMIYGRGP P+GM MVPMVLPDG++GYVLQQPG PP
Sbjct: 389 GYMGDPYGAYGG---GGPGFNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGIPPP 445
Query: 447 PRPRRVDRSNGPGGRGGRGGSSGGDDGNRGRRYRPY 482
P PRR DR + G S G +G+ GRRYRPY
Sbjct: 446 PPPRRGDRRD---------GGSRGGEGSHGRRYRPY 472
>gi|449444797|ref|XP_004140160.1| PREDICTED: uncharacterized protein LOC101218373 [Cucumis sativus]
Length = 784
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/390 (54%), Positives = 274/390 (70%), Gaps = 58/390 (14%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
EDE KHA+LLALPP+GSEV++GG+P+D+SE+DLR CE IG+V EVR+M+ KES E+KG
Sbjct: 378 EDETKKHAELLALPPHGSEVYVGGIPQDSSEDDLRRFCESIGEVTEVRVMRSKESNENKG 437
Query: 150 FAFVSFRS-------------------------KEFAKKAIDELHSKELKGKTIRCSLSE 184
FAFV+FRS +
Sbjct: 438 FAFVTFRSVELASKAIDELNNTEFKGKKIKCSSS-------------------------Q 472
Query: 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
K+RLFIGNVP++W E++ +KV+ ++GPGV +EL+KD +N S NRGF+F+ YYN+ACA+
Sbjct: 473 AKHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAE 532
Query: 245 YSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ 304
YSRQKM+N FKLD N PT+SWADPK+ S+AASQVKA+YVKN+P N + E++K+LF
Sbjct: 533 YSRQKMMNPKFKLDDNAPTVSWADPKNA--DSSAASQVKAVYVKNLPKNVTQEQLKKLFD 590
Query: 305 RHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362
HG++TKVV+PP KSG K GF+H++ERSSA+KA+K+TEKYE+DGQVLE LAKPQ D
Sbjct: 591 HHGKITKVVLPPAKSGQEKNRIGFVHFSERSSAMKALKNTEKYELDGQVLECSLAKPQAD 650
Query: 363 KKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMH 422
+K+ G+ GL+P + P GY GF G YG+V G+G +GF QP+IYGRGP P+GM
Sbjct: 651 QKSGGSNSQKSGLLPNYPPRVGY-GFVGGAYGAVNAGYG-GSGFGQPLIYGRGPTPAGMA 708
Query: 423 MVPMVLPDGQIGYVLQQPGVQM--PPPRPR 450
M+PM+LPDG+IGYVLQQPG QM PPP PR
Sbjct: 709 MMPMLLPDGRIGYVLQQPGSQMLTPPPHPR 738
>gi|356539254|ref|XP_003538114.1| PREDICTED: APOBEC1 complementation factor-like [Glycine max]
Length = 505
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 221/403 (54%), Positives = 295/403 (73%), Gaps = 15/403 (3%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
EDEK KHA+LL++PP+GSEV+IGG+P AS+EDL+ LCE IG+V EVR+MK K+S E+KG
Sbjct: 108 EDEKKKHAELLSIPPHGSEVYIGGIP-HASDEDLKSLCERIGEVAEVRIMKGKDSSENKG 166
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
F FV+FRS E A KAI+EL++ E GK I+CS S+ K+RLFIGNVP++W ++ +K++ +
Sbjct: 167 FGFVTFRSVELASKAIEELNNTEFMGKKIKCSKSQAKHRLFIGNVPRSWGVEDLKKIVTE 226
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
+GPGV +EL+KD +N + NRGF+F+ YYN+ACA+YSRQKM++ FKL N PT+SWADP
Sbjct: 227 IGPGVTGVELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKMMSPTFKLGENAPTVSWADP 286
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFI 327
K+ S+AASQVKA+YVKN+P N + E++K+LF+RHG++TKVV+PP KSG K GF+
Sbjct: 287 KNA--ESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFV 344
Query: 328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEG--TFPYSPGLVPTHLPHAGY 385
H+AERS+A+KA+K+TE+YE++GQ+L+ LAKPQ D+K+ G T PGL+P++ PH GY
Sbjct: 345 HFAERSNAMKALKNTERYELEGQLLQCSLAKPQADQKSGGSNTQKPGPGLLPSYPPHVGY 404
Query: 386 GGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGV--Q 443
G G A G QPM+YG G PSGM ++PM+L DG+IGYVLQQPG+ Q
Sbjct: 405 GLVGGA--YGGLGAGYAAPGLAQPMLYGGGQTPSGMAIMPMLLADGRIGYVLQQPGMQPQ 462
Query: 444 MPPPRPRRVDRSNGPGGRGGRGGSSG----GDDGNRGRRYRPY 482
PP R G G GSS +DG GRRYRPY
Sbjct: 463 APPSHHRGGRGGGGSGSGNRNVGSSSKGRHNNDGGHGRRYRPY 505
>gi|449518867|ref|XP_004166457.1| PREDICTED: uncharacterized protein LOC101228216 [Cucumis sativus]
Length = 828
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/390 (54%), Positives = 274/390 (70%), Gaps = 58/390 (14%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
EDE KHA+LLALPP+GSEV++GG+P+D+SE+DLR CE IG+V EVR+M+ KES E+KG
Sbjct: 422 EDETKKHAELLALPPHGSEVYVGGIPQDSSEDDLRRFCESIGEVTEVRVMRSKESNENKG 481
Query: 150 FAFVSFRS-------------------------KEFAKKAIDELHSKELKGKTIRCSLSE 184
FAFV+FRS +
Sbjct: 482 FAFVTFRSVELASKAIDELNNTEFKGKKIKCSSS-------------------------Q 516
Query: 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
K+RLFIGNVP++W E++ +KV+ ++GPGV +EL+KD +N S NRGF+F+ YYN+ACA+
Sbjct: 517 AKHRLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAE 576
Query: 245 YSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ 304
YSRQKM+N FKLD N PT+SWADPK+ S+AASQVKA+YVKN+P N + E++K+LF
Sbjct: 577 YSRQKMMNPKFKLDDNAPTVSWADPKNA--DSSAASQVKAVYVKNLPKNVTQEQLKKLFD 634
Query: 305 RHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362
HG++TKVV+PP KSG K GF+H++ERSSA+KA+K+TEKYE+DGQVLE LAKPQ D
Sbjct: 635 HHGKITKVVLPPAKSGQEKNRIGFVHFSERSSAMKALKNTEKYELDGQVLECSLAKPQAD 694
Query: 363 KKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMH 422
+K+ G+ GL+P + P GY GF G YG+V G+G +GF QP+IYGRGP P+GM
Sbjct: 695 QKSGGSNSQKSGLLPNYPPRVGY-GFVGGAYGAVNAGYG-GSGFGQPLIYGRGPTPAGMA 752
Query: 423 MVPMVLPDGQIGYVLQQPGVQM--PPPRPR 450
M+PM+LPDG+IGYVLQQPG QM PPP PR
Sbjct: 753 MMPMLLPDGRIGYVLQQPGSQMLTPPPHPR 782
>gi|168039508|ref|XP_001772239.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676409|gb|EDQ62892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 507
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/478 (46%), Positives = 315/478 (65%), Gaps = 37/478 (7%)
Query: 21 EMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGASEKDQSAEANRNDDDTPHVEE 80
++D DVE Q +D +E+ + D + A A E D A D VE+
Sbjct: 51 DLDIDVEAQEGDDSQEDQDIDVLNGDHDHGITEADLAAAEETDAHVGA-----DVAIVED 105
Query: 81 EEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMK 140
+E E + +K LL PP+GSE+F+GG+ +D +EEDLR LC GDV+EVRL+K
Sbjct: 106 KE-------EKDAEKSGDLLKRPPHGSEIFVGGITRDTTEEDLRTLCSSCGDVYEVRLLK 158
Query: 141 DKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTE 200
DK++G++KG+AFV+F ++E A+KAI+ L+ E+KG+ +R S S++K+RLF+GN+PK W +
Sbjct: 159 DKDTGQNKGYAFVTFLNEECAEKAIETLNDSEVKGRKLRFSQSQSKHRLFVGNIPKTWEK 218
Query: 201 DEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN 260
+E V+ + GPG++++EL+KDP+ P RNRGF FV YYN+ACA+++R++M ++F+L N
Sbjct: 219 EELESVLSEQGPGIQSVELLKDPKTPGRNRGFGFVEYYNHACAEHARREMSKSSFRLGTN 278
Query: 261 TPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
PTISWADP+S PD S A SQVK +YV+N+PD+ + E++++LF+RHGE+ KVV+P K G
Sbjct: 279 APTISWADPRSGPDVS-AMSQVKVVYVRNLPDSVTEEQLQKLFERHGEIVKVVLPATKPG 337
Query: 321 --KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSP----G 374
KRDFGF+H+++R+ ALKA++ TE YE++G++LE LAKP +K+ G P P G
Sbjct: 338 QAKRDFGFVHFSDRAQALKAIEKTEVYELEGRILETSLAKPPAEKRAAGGEPAYPPQRAG 397
Query: 375 LVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIG 434
L+P H +GY G+ G Y SVG +G G+ QP+IYGRG P+GM MVPM+LPDG++G
Sbjct: 398 LLPQHQNRSGY-GYGGDVYNSVGGAYGQPRGYNQPIIYGRGLAPAGMTMVPMMLPDGRVG 456
Query: 435 YVLQQPGVQMPPPRPRRVDRSNGPGGRGGRG----------GSSGGDDGNRGRRYRPY 482
YVLQQP P P R GGRG G G S GRRYRPY
Sbjct: 457 YVLQQPSGGQGGPAPYR-------GGRGSHGLLPFRHGGGSGGSAASGAGGGRRYRPY 507
>gi|413921449|gb|AFW61381.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 465
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 230/395 (58%), Positives = 294/395 (74%), Gaps = 19/395 (4%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E+E+ K +LALPP+GSEVFIGGLP+D +EEDLR+LCEP+G+++EVRL KDK++ E+KG
Sbjct: 88 EEERSKWDDMLALPPHGSEVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKG 147
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
FAFV+F KE A++AI+++ +E KG+T+RCSLS+ K+RLF+GNVPK +E+E I+
Sbjct: 148 FAFVTFMDKEAAQRAIEDVQDREFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKG 207
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
GPGV IE+ K +P+RNRGF FV YYN+ACADY+RQK+ + NFK+DG+ T+SWA+P
Sbjct: 208 KGPGVINIEMFK--HDPNRNRGFLFVEYYNHACADYARQKLSSPNFKVDGSQLTVSWAEP 265
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIH 328
K + D S+AA+QVK +YVKN+P+N S EKIK+LF +HGEVTK+V+PP K+G KRDFGF+H
Sbjct: 266 KGSTDASSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKRDFGFVH 325
Query: 329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGF 388
+AERSSALKAVK +EKYEIDGQVLEV +AKP DKK + + + PG P + G
Sbjct: 326 FAERSSALKAVKGSEKYEIDGQVLEVSMAKPLADKKPDHS--HRPGGGPNY--PLPPYGG 381
Query: 389 AGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMPPPR 448
G G G + QPMIYGRGP P+GM MVPMVLPDG++GYVLQQPG PPP
Sbjct: 382 GGYMGDPYGAYGGGGPAYNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGMPPPPP 441
Query: 449 PRRV-DRSNGPGGRGGRGGSSGGDDGNRGRRYRPY 482
PRR DR + GRGG G S RRYRPY
Sbjct: 442 PRRGSDRRD--SGRGGEGHS---------RRYRPY 465
>gi|225440864|ref|XP_002276509.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
Length = 490
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/366 (55%), Positives = 280/366 (76%), Gaps = 12/366 (3%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++E +HA+LLALPP+GSEV++GG+P +ASEEDLR CEP+G+V EVR++K K+S E+KG
Sbjct: 104 DNENRRHAELLALPPHGSEVYLGGIPNNASEEDLRGFCEPVGEVTEVRILKGKDSAETKG 163
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
+AFV+FR+KE A KA++EL++ E+KG+ I+CS S+ K+RLFI NVP+ W E++ +KV+ +
Sbjct: 164 YAFVTFRTKELASKAMEELNNAEIKGRKIKCSASQVKHRLFISNVPRTWEEEDMKKVVTE 223
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
+GPGV ++L KDPQN SRNRGF+F+ YYN+ACA+YSR+KM N FKLD N T+SWADP
Sbjct: 224 IGPGVNLVDLWKDPQNSSRNRGFAFIEYYNHACAEYSRKKMSNPKFKLDNNASTVSWADP 283
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD--FGFI 327
K+ S+AASQVKA+Y+KN+P + ++++ELF +HG++TKVV+PP K+G+ + FGF+
Sbjct: 284 KNV--ESSAASQVKAVYIKNLPKYMTQDQLRELFGQHGKITKVVIPPAKAGQENCRFGFV 341
Query: 328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK-TEGTFPYSPGLVPTHLPHAGYG 386
H+AERSSA+KA+K+TEKYEIDG +L LAKPQ DKK + G+ L+P++ P GYG
Sbjct: 342 HFAERSSAMKALKNTEKYEIDGHILGCSLAKPQADKKFSGGSNSQKSALLPSYPPWVGYG 401
Query: 387 GFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQ--M 444
AAGF QP+ YGRG +G M+PM+LPDG+IGYVLQQPG+Q
Sbjct: 402 LLG-----GAPGAGYGAAGFGQPLTYGRGLTSAGTAMMPMLLPDGRIGYVLQQPGMQPYT 456
Query: 445 PPPRPR 450
PP +PR
Sbjct: 457 PPSQPR 462
>gi|297740122|emb|CBI30304.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/366 (55%), Positives = 281/366 (76%), Gaps = 12/366 (3%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++E +HA+LLALPP+GSEV++GG+P +ASEEDLR CEP+G+V EVR++K K+S E+KG
Sbjct: 75 DNENRRHAELLALPPHGSEVYLGGIPNNASEEDLRGFCEPVGEVTEVRILKGKDSAETKG 134
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
+AFV+FR+KE A KA++EL++ E+KG+ I+CS S+ K+RLFI NVP+ W E++ +KV+ +
Sbjct: 135 YAFVTFRTKELASKAMEELNNAEIKGRKIKCSASQVKHRLFISNVPRTWEEEDMKKVVTE 194
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
+GPGV ++L KDPQN SRNRGF+F+ YYN+ACA+YSR+KM N FKLD N T+SWADP
Sbjct: 195 IGPGVNLVDLWKDPQNSSRNRGFAFIEYYNHACAEYSRKKMSNPKFKLDNNASTVSWADP 254
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD--FGFI 327
K+ S+AASQVKA+Y+KN+P + ++++ELF +HG++TKVV+PP K+G+ + FGF+
Sbjct: 255 KNV--ESSAASQVKAVYIKNLPKYMTQDQLRELFGQHGKITKVVIPPAKAGQENCRFGFV 312
Query: 328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK-TEGTFPYSPGLVPTHLPHAGYG 386
H+AERSSA+KA+K+TEKYEIDG +L LAKPQ DKK + G+ L+P++ P GYG
Sbjct: 313 HFAERSSAMKALKNTEKYEIDGHILGCSLAKPQADKKFSGGSNSQKSALLPSYPPWVGYG 372
Query: 387 GFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQ--M 444
G AAGF QP+ YGRG +G M+PM+LPDG+IGYVLQQPG+Q
Sbjct: 373 LLGGA-----PGAGYGAAGFGQPLTYGRGLTSAGTAMMPMLLPDGRIGYVLQQPGMQPYT 427
Query: 445 PPPRPR 450
PP +PR
Sbjct: 428 PPSQPR 433
>gi|242080305|ref|XP_002444921.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
gi|241941271|gb|EES14416.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
Length = 484
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 224/405 (55%), Positives = 286/405 (70%), Gaps = 34/405 (8%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
EDE+ K +LLALPP+GS+VFIGGLP+D +E+DLR+LCEP+G+++EVRL KDK++ E+KG
Sbjct: 102 EDERSKWDELLALPPHGSQVFIGGLPRDITEDDLRELCEPLGEIYEVRLTKDKDTNENKG 161
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
FAFV+F K+ A++AI+++ +E KG+T+RCSLS+ K+RLFIGNVPK +E+E +I+
Sbjct: 162 FAFVTFTDKDAAQRAIEDVQDREYKGRTLRCSLSQAKHRLFIGNVPKGLSEEELTNIIKG 221
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
GPGV IE+ KD +P+RNRGF FV YYN+ACA+Y+R K+ + NFK+DG+ T+SWA+P
Sbjct: 222 KGPGVVNIEMFKDQHDPNRNRGFLFVEYYNHACAEYARLKLSSRNFKVDGSQLTVSWAEP 281
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIH 328
K D S+AA+QVK +YVKN+P+N S EKIK+LF +HGEVTK+V+PP K+G KRDFGF+H
Sbjct: 282 KGQTDPSSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKRDFGFVH 341
Query: 329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYG-- 386
+AERSSALKAVK +EKYEIDGQVLEV +AKP DKK P H +G G
Sbjct: 342 FAERSSALKAVKGSEKYEIDGQVLEVSMAKPLADKK------------PDHSHRSGGGPN 389
Query: 387 ---------GFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVL 437
G G G + QPMIYGRGP P+GM MVPMVLPDG++GYVL
Sbjct: 390 YPLPPYGGGGGYMGDPYGAYGGGGGGPAYNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVL 449
Query: 438 QQPGVQMPPPRPRRVDRSNGPGGRGGRGGSSGGDDGNRGRRYRPY 482
QQ MPPP P R RGG G S RRYRPY
Sbjct: 450 QQ-PGGMPPPPPPRRGGDRRDSSRGGEGHS---------RRYRPY 484
>gi|218184150|gb|EEC66577.1| hypothetical protein OsI_32766 [Oryza sativa Indica Group]
Length = 496
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 243/419 (57%), Positives = 300/419 (71%), Gaps = 40/419 (9%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E+EK K +LLALPP GSEVFIGGLP+D +E+DL +LCE G++ EVRLMKDKE+ E+KG
Sbjct: 92 EEEKRKWDELLALPPQGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKG 151
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
FAFV+F K+ A+ AI++LH KE KG+T+RCSLS+ K+RLF+GNVPK +EDE R +I+
Sbjct: 152 FAFVTFTGKDGAQHAIEDLHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELRNIIQG 211
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
GPGV IE+ KD +PSRNRGF FV YYN+ACADY++QK+ NFK+DG+ T+SWA+P
Sbjct: 212 KGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAEP 271
Query: 270 K--STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGF 326
K S+ D S+AA+QVK +YVKN+P+N S EKIKE+F+ HGEVTKVV+PP K+G KRDFGF
Sbjct: 272 KGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRDFGF 331
Query: 327 IHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYG 386
+H+AERSSALKAVK EKYEIDGQVLEV +AKP DKK + +F PG P + P YG
Sbjct: 332 VHFAERSSALKAVKGNEKYEIDGQVLEVSMAKPLGDKKPDHSF--KPGGAP-NFPLPPYG 388
Query: 387 GF-----------------------AGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHM 423
G+ G G G AA +QPMIYGRGP P+GM M
Sbjct: 389 GYMGDPYGAYGGGGPGFNQSQVPKLTGAQGGRTSHEPGGAA--EQPMIYGRGPAPAGMRM 446
Query: 424 VPMVLPDGQIGYVLQQPGVQMPPPRPRRVDRSNGPGGRGGRGGSSGGDDGNRGRRYRPY 482
VPMVLPDG++GYVLQQPG PPP PRR DR + G S G +G+ GRRYRPY
Sbjct: 447 VPMVLPDGRLGYVLQQPGGIPPPPPPRRGDRRD---------GGSRGGEGSHGRRYRPY 496
>gi|356542762|ref|XP_003539834.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Glycine
max]
Length = 501
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/403 (53%), Positives = 288/403 (71%), Gaps = 23/403 (5%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
EDEK KHA+LL+LPP+GSEV+IGG+P AS+EDL+ LCE IG+V EVR+MK K+S E+KG
Sbjct: 112 EDEKRKHAELLSLPPHGSEVYIGGIP-HASDEDLKSLCERIGEVAEVRIMKGKDSSENKG 170
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
F FV+F S E A KAI+EL++ E GK I+CS S+ K+RLFIGNVP++W ++ +K++ +
Sbjct: 171 FGFVTFTSVELASKAIEELNNTEFMGKKIKCSKSQAKHRLFIGNVPRSWGVEDLKKIVTE 230
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
+GPG D +N + NRGF+F+ YYN+ACA+YSRQKM++ FKL N PT+SWADP
Sbjct: 231 IGPG--------DMKNTNNNRGFAFIDYYNHACAEYSRQKMMSPTFKLGENAPTVSWADP 282
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFI 327
K+ S+AASQVKA+YVKN+P N + E++K+LF+RHG++TKVV+PP KSG K GF+
Sbjct: 283 KNA--ESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFV 340
Query: 328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEG--TFPYSPGLVPTHLPHAGY 385
H+AERS+A+KA+K+TE+YE++GQ+LE LAKPQ D+K+ G T PGL+P++ PH GY
Sbjct: 341 HFAERSNAMKALKNTERYELEGQLLECSLAKPQADQKSGGSNTQKPGPGLLPSYPPHVGY 400
Query: 386 GGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGV--Q 443
G G A G QP++YG G P+GM M+PM+L DG+IGYVLQQPG+ Q
Sbjct: 401 GLVGGA--YGALGAGYAAPGLAQPLLYGGGQTPAGMAMMPMLLADGRIGYVLQQPGMQPQ 458
Query: 444 MPPPRPRRVDRSNGPGGRGGRGGSSG----GDDGNRGRRYRPY 482
PP R G G GSS +DG GRRYRPY
Sbjct: 459 APPSHHRGGRGGGGSGSGNRNAGSSSKGRHNNDGGHGRRYRPY 501
>gi|224138490|ref|XP_002322827.1| predicted protein [Populus trichocarpa]
gi|222867457|gb|EEF04588.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/357 (58%), Positives = 273/357 (76%), Gaps = 12/357 (3%)
Query: 91 DEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF 150
DE+ KHA+LLALPP+GSEV++GG+P DASE DL++ CE IG+V EVR+MK K+S ESKG+
Sbjct: 73 DEQRKHAELLALPPHGSEVYLGGIPPDASEGDLKEFCESIGEVTEVRIMKGKDSSESKGY 132
Query: 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDV 210
AFVSFR+KE A KAI+EL++ E KGK ++CS S+ +RLFIGNVP+NW E+ +K ++ +
Sbjct: 133 AFVSFRTKELASKAIEELNNTEFKGKKVKCSTSQANHRLFIGNVPRNWGEENMKKAVKKI 192
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
GPGV ++EL+KDPQNPSRNRGF+F+ YYN+ACA+YSR+KM N FKLD N PT+SWADPK
Sbjct: 193 GPGVNSVELLKDPQNPSRNRGFAFIEYYNHACAEYSRKKMSNPEFKLDDNAPTVSWADPK 252
Query: 271 STPDHSAAASQ----VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDF 324
+ S+AASQ VKA+YVKN+P++ + + +++LF+ HG+VTKVV+PP K G K F
Sbjct: 253 NA--GSSAASQVCCSVKAVYVKNLPEDITQDGLRQLFEHHGKVTKVVLPPAKPGHEKSRF 310
Query: 325 GFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK-TEGTFPYSPGLVPTHLPHA 383
GF+H+AERSSA+KA+K+TEKYEIDG VL+ LAKP TD+K + G + L P
Sbjct: 311 GFVHFAERSSAMKALKNTEKYEIDGHVLDCSLAKPHTDQKPSGGPNSQNSSLYSNFPPQL 370
Query: 384 GYG---GFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVL 437
GYG G G G AAGF QP+IYGRGP P+GM M+PM+LPDG+IGYVL
Sbjct: 371 GYGLAGGTYGGFGAGFGGAGFGAAGFTQPVIYGRGPTPAGMAMMPMLLPDGRIGYVL 427
>gi|356503817|ref|XP_003520699.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Glycine max]
Length = 464
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 240/481 (49%), Positives = 322/481 (66%), Gaps = 45/481 (9%)
Query: 5 TEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGASEKDQ 64
T+ ++RVD + DN D E EE EE + EE +++EE + + S+K +
Sbjct: 26 TDSDERVDFDGDN------DQEETMEEEVEYEEVEEEEEEEEEEEEEEEEEETKLSDKTR 79
Query: 65 SAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLR 124
A+ E EK KHA+LLALPP+GSEV+IGG+P++ SEEDLR
Sbjct: 80 VADTK-------------------DEVEKKKHAELLALPPHGSEVYIGGIPQNVSEEDLR 120
Query: 125 DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184
C+ +G+V EVR+MK KESGE+KG+AFV+F +KE A KAI+EL++ E KGK I+CS S+
Sbjct: 121 VFCQSVGEVSEVRIMKGKESGEAKGYAFVTFMTKELASKAIEELNNSEFKGKRIKCSTSQ 180
Query: 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
K++LFIGNVPK WTE + +KV+ ++GPGV +EL+KDPQN SRNRG++F+ YYN+ACA+
Sbjct: 181 VKHKLFIGNVPKYWTEGDMKKVVAEIGPGVICVELLKDPQNSSRNRGYAFIEYYNHACAE 240
Query: 245 YSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ 304
YSRQKM N+NFKL N PT+SWADP+++ S+A S VK++YVKN+P+N + +++KELF+
Sbjct: 241 YSRQKMSNSNFKLGSNAPTVSWADPRNS--ESSAISLVKSVYVKNLPENITQDRLKELFE 298
Query: 305 RHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362
HG++TKVV+P KSG K FGF+H+AERSSA+KA+K+TEKYEIDGQ+LE LAKPQ +
Sbjct: 299 HHGKITKVVLPSAKSGQEKSRFGFVHFAERSSAMKALKNTEKYEIDGQLLECSLAKPQAN 358
Query: 363 KKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMH 422
+ P L+PT+ PH GYG G AAGF QP++YG GP P GM
Sbjct: 359 SQ-------KPALLPTYPPHLGYGMVGGA-----IGAGYGAAGFAQPLMYGPGPTPGGMA 406
Query: 423 MVPMVLPDGQIGYVLQQPGVQMPPPRPRRVDRSNGPGGRGGRGGSSGGDDGNRGR-RYRP 481
M+PM+L DG+I Y++QQPG Q P P R G S D+ NRG RY P
Sbjct: 407 MMPMMLSDGRIAYIVQQPGFQQPAPVSRHGRSGG---SSSSGGKCSNDDNRNRGHGRYHP 463
Query: 482 Y 482
Y
Sbjct: 464 Y 464
>gi|302770274|ref|XP_002968556.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
gi|302788312|ref|XP_002975925.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300156201|gb|EFJ22830.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300164200|gb|EFJ30810.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
Length = 477
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 220/499 (44%), Positives = 323/499 (64%), Gaps = 48/499 (9%)
Query: 4 STEVED--RVDLEEDNYMEE-MDDDVEEQVEEDPEEEGG---DGNFEENDDDEEYDHSKA 57
S EV D R+D++ D E+ +DD+ + VEE+ ++ G D N +E +DE Y
Sbjct: 7 SPEVHDDERIDIDGDVEPEDVIDDETDGIVEEEKADQEGLDLDMNEDEGGEDEAYTTDHE 66
Query: 58 GASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKD 117
+ ++A A+ + SV D+ ++ LL+ PP+GSEVFIGG+ +D
Sbjct: 67 NGLQNGENASADLGE--------------SVDVDDDEETKSLLSRPPHGSEVFIGGVTRD 112
Query: 118 ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177
+E+DLR+LC P G++FEVR++KDKE+G +KG+AFV++ ++E A+KAI+ L + ELKG+
Sbjct: 113 TNEDDLRELCSPCGEIFEVRILKDKETGNNKGYAFVTYTNRETAEKAIETLANSELKGRK 172
Query: 178 IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+R S S+ K+RLFIGN+PK+W E K++ + GPGVE +EL+KDP+NP +NRGF+FV Y
Sbjct: 173 LRFSHSQAKHRLFIGNIPKSWDTPELEKILAEEGPGVEGVELLKDPRNPGKNRGFAFVEY 232
Query: 238 YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTE 297
YN+ACAD++R+ M ++F+L N PT+SWADP+ T AA SQ+K +YV+N+P+ + E
Sbjct: 233 YNHACADHARKLMSRSSFRLGNNVPTVSWADPR-TGAEPAATSQIKVVYVRNLPEAVTEE 291
Query: 298 KIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355
+++ LF+ HGE+TKVV+P K G KRDFGF+H+A+R+ ALKA++ TEKYE++G+VLE
Sbjct: 292 QLRGLFEHHGEITKVVLPQSKPGQPKRDFGFVHFADRNDALKAIEKTEKYELEGRVLESS 351
Query: 356 LAKPQTDKK--TEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAG-FQQPMIY 412
LAKP +KK + P G++ P + Y ++GTG G + QP+IY
Sbjct: 352 LAKPPVEKKGMDQPLAPQRLGILSQLQPRTAAYSYPVDIYNNIGTGGGYGQNRYNQPLIY 411
Query: 413 GRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRRVDRSNGPGGRGGRG------- 465
GRGP P+GM MVP+ LPDG++GYVLQQPG+Q G + GRG
Sbjct: 412 GRGPPPAGMTMVPIQLPDGRLGYVLQQPGIQQ-------------QGSQFGRGVLSSSYR 458
Query: 466 --GSSGGDDGNRGRRYRPY 482
++ G G+ RRYRPY
Sbjct: 459 SSSNNAGSGGSSSRRYRPY 477
>gi|124360410|gb|ABD33357.2| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 742
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/362 (52%), Positives = 265/362 (73%), Gaps = 6/362 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+DEK KHA+LL+LP + SEV++GG+P DA EDL++ CE IG+V +VR+ K K++ E++G
Sbjct: 330 DDEKKKHAELLSLPHHKSEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRG 389
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
FAFV++RS E A KAI EL++ E K I+CS S+ K+RLFIGN+P++W E + +KV+ D
Sbjct: 390 FAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAKSRLFIGNIPRSWGEKDLKKVVSD 449
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
+GPGV +ELIKD +N S NRG++F+ Y+NN CA+YSRQKM + +FKL N PT++WA+P
Sbjct: 450 IGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPTVNWAEP 509
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFI 327
K+ S+A+SQVK +YVKN+P N + E++K+LF+ HG++TKVV+PP K G K GF+
Sbjct: 510 KNA--DSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFV 567
Query: 328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGG 387
H+AERS+A+KA+K+TEKY +DGQ+LE LAK Q D K + + G +P + PH GY G
Sbjct: 568 HFAERSNAMKALKNTEKYVLDGQILECSLAKQQADPKAVVSNIQTQGSLPRYPPHVGY-G 626
Query: 388 FAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMPPP 447
G PYG +G G+G A G QP YG G P G+ M+P +L D +I YVLQQPG+Q P
Sbjct: 627 LDGNPYGVLGAGYG-APGLAQPFTYGLGQTPGGIAMMPKLLVDRRIRYVLQQPGLQPHPT 685
Query: 448 RP 449
P
Sbjct: 686 HP 687
>gi|357501821|ref|XP_003621199.1| RNA-binding protein [Medicago truncatula]
gi|355496214|gb|AES77417.1| RNA-binding protein [Medicago truncatula]
Length = 782
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/362 (52%), Positives = 265/362 (73%), Gaps = 6/362 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+DEK KHA+LL+LP + SEV++GG+P DA EDL++ CE IG+V +VR+ K K++ E++G
Sbjct: 365 DDEKKKHAELLSLPHHKSEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRG 424
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
FAFV++RS E A KAI EL++ E K I+CS S+ K+RLFIGN+P++W E + +KV+ D
Sbjct: 425 FAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAKSRLFIGNIPRSWGEKDLKKVVSD 484
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
+GPGV +ELIKD +N S NRG++F+ Y+NN CA+YSRQKM + +FKL N PT++WA+P
Sbjct: 485 IGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPTVNWAEP 544
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFI 327
K+ S+A+SQVK +YVKN+P N + E++K+LF+ HG++TKVV+PP K G K GF+
Sbjct: 545 KNA--DSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFV 602
Query: 328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGG 387
H+AERS+A+KA+K+TEKY +DGQ+LE LAK Q D K + + G +P + PH GY G
Sbjct: 603 HFAERSNAMKALKNTEKYVLDGQILECSLAKQQADPKAVVSNIQTQGSLPRYPPHVGY-G 661
Query: 388 FAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMPPP 447
G PYG +G G+G A G QP YG G P G+ M+P +L D +I YVLQQPG+Q P
Sbjct: 662 LDGNPYGVLGAGYG-APGLAQPFTYGLGQTPGGIAMMPKLLVDRRIRYVLQQPGLQPHPT 720
Query: 448 RP 449
P
Sbjct: 721 HP 722
>gi|357511099|ref|XP_003625838.1| RNA-binding protein [Medicago truncatula]
gi|355500853|gb|AES82056.1| RNA-binding protein [Medicago truncatula]
Length = 477
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 209/408 (51%), Positives = 290/408 (71%), Gaps = 15/408 (3%)
Query: 83 KPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK 142
KP E +K KHA+LLALPP+GSEV+IGG+P + SE+DLR C+ +G+V EVR+MK K
Sbjct: 77 KPLDEEDEADKKKHAELLALPPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGK 136
Query: 143 ESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDE 202
E+ KG+AFV+F++KE A KA+ EL++ E KG+ I+CS S+ K+RLFIG+VPK WT ++
Sbjct: 137 EA---KGYAFVTFKTKELASKALKELNNSEFKGRKIKCSPSQVKHRLFIGSVPKEWTVED 193
Query: 203 FRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262
+KV+ VGPGV ++EL+KDPQ+ SRNRGF+F+ Y+N+ACA+YSRQKM N+NFKLD N
Sbjct: 194 MKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDA 253
Query: 263 TISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-- 320
+SWADP+++ S+++SQVKA+YVKN+P+N + ++KELF+ HG++TKV +PP K+G
Sbjct: 254 IVSWADPRNS--ESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQE 311
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEG-TFPYSPGLVPTH 379
K +GF+H+A+RSSA+KA+K+TEKYEI+GQ LE LAKPQ D+K+ G + ++ ++P +
Sbjct: 312 KSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAKPQADQKSSGASNSFNSAVLPAY 371
Query: 380 LPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQ 439
P G AAGF P++YG G P+GM M+PM+LPDG+I YVLQQ
Sbjct: 372 PP--PLGYGMVGGGYGAVGAGYGAAGFAPPLMYGPGATPAGMTMMPMLLPDGRIAYVLQQ 429
Query: 440 PGVQMPPPR---PRRVDRSNGPGGRGGRGGSSGGDDG-NRGR-RYRPY 482
PG+Q P + P V R G G D+ NRG RY PY
Sbjct: 430 PGLQQPSFQQHAPSPVSRHGRSSGVSSSGEKRSNDNSRNRGHCRYNPY 477
>gi|297816558|ref|XP_002876162.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297322000|gb|EFH52421.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 470
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/355 (52%), Positives = 268/355 (75%), Gaps = 8/355 (2%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K +H +LLALP +GSEV++GG+P DA+E DL+ C+ IG+V EVR+M++KESG+ KG+AF
Sbjct: 77 KKRHVELLALPSHGSEVYLGGIPTDATEGDLKGFCQSIGEVTEVRIMREKESGDGKGYAF 136
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP 212
V+FR+K+ A KAID L+S E +GK I+CS ++ K+RLF+GNVP+NWTE + +K +GP
Sbjct: 137 VTFRNKDLASKAIDTLNSTEFRGKRIKCSTTQAKHRLFLGNVPRNWTESDIKKAANRIGP 196
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
GV+ +EL K+PQN RNRGF+F+ Y+N+ACA+YS+QKM N +FKLD N PT+SWA+ +S
Sbjct: 197 GVQIVELPKEPQNMGRNRGFAFIEYHNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSG 256
Query: 273 PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD--FGFIHYA 330
++ASQVKALY+KN+P + + E++K LF+ HG++ KVV+PP K GK D +GF+HYA
Sbjct: 257 GGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYA 316
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYS---PGLVPTHLPHAGYGG 387
ER+S ++A+K+TE+YEIDG +L+ LAKPQ D+K + L P + P Y G
Sbjct: 317 ERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKANANTVQNVQKSQLQPNYPPLLSY-G 375
Query: 388 FAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGV 442
A +P+G++G GFG A+ + QP+++ G GM M+P++LPDG+IGYVLQQPG+
Sbjct: 376 MAPSPFGALG-GFG-ASAYSQPLMHAGGHAAGGMSMMPIMLPDGRIGYVLQQPGL 428
>gi|326517573|dbj|BAK03705.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 372
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/341 (58%), Positives = 260/341 (76%), Gaps = 12/341 (3%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P + + G+ +EEDLR LCEP+G++FEVRLMKDKE+ E+KGFAFV+F +K+ A+
Sbjct: 9 PRRARRYSWGVSPVTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQH 68
Query: 164 AIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
AI+ELH K+ KG+T+RCSLS+ K+RLF+GNVPK +E+E +I+ GPGV IE+ KD
Sbjct: 69 AIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDL 128
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA----A 279
NPSRNRGF FV YYN+ACADY+RQK+ + +FK+DG+ T+SWA+PK + S+ A
Sbjct: 129 HNPSRNRGFLFVEYYNHACADYARQKLSSPDFKVDGSQLTVSWAEPKGSSSSSSDSSSPA 188
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKA 338
+QVK +YVKN+P+N S EK+K+LF+ HGEVTK+V+PP K+G KRDFGF+H+AERSSALKA
Sbjct: 189 AQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRDFGFVHFAERSSALKA 248
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGT 398
VK +EKYEIDGQVLEV +AKP +DKK + +F PG P++ P YGG+ G
Sbjct: 249 VKGSEKYEIDGQVLEVSMAKPLSDKKPDHSF--KPGGAPSY-PLPPYGGYM----GDPYG 301
Query: 399 GFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQ 439
+G GF QPMIYGRGP P+GM MVPMVLPDG++GYVLQQ
Sbjct: 302 AYGGGPGFNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQ 342
>gi|15231284|ref|NP_190834.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314840|ref|NP_001030849.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7669940|emb|CAB89227.1| putative RNA binding protein [Arabidopsis thaliana]
gi|51970792|dbj|BAD44088.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|51971921|dbj|BAD44625.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|115646718|gb|ABJ17093.1| At3g52660 [Arabidopsis thaliana]
gi|332645455|gb|AEE78976.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645456|gb|AEE78977.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 471
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/355 (52%), Positives = 268/355 (75%), Gaps = 8/355 (2%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K +H +LLALPP+GSEV++GG+P DA+E DL+ C IG+V EVR+M++K+SG+ KG+AF
Sbjct: 78 KKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAF 137
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP 212
V+FRSK+ A +AID L++ + +GK I+CS ++ K+RLF+GNVP+NW E + +K +GP
Sbjct: 138 VTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGP 197
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
GV+ +EL K+PQN RNRGF+F+ YYN+ACA+YS+QKM N +FKLD N PT+SWA+ +S
Sbjct: 198 GVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSG 257
Query: 273 PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD--FGFIHYA 330
++ASQVKALY+KN+P + + E++K LF+ HG++ KVV+PP K GK D +GF+HYA
Sbjct: 258 GGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYA 317
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYS---PGLVPTHLPHAGYGG 387
ER+S ++A+K+TE+YEIDG +L+ LAKPQ D+KT + L P + P Y G
Sbjct: 318 ERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNYPPLLSY-G 376
Query: 388 FAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGV 442
A +P+G++G GFG A+ + QP+++ G GM M+P++LPDG+IGYVLQQPG+
Sbjct: 377 MAPSPFGALG-GFG-ASAYSQPLMHAGGHAAGGMSMMPIMLPDGRIGYVLQQPGL 429
>gi|346703256|emb|CBX25354.1| hypothetical_protein [Oryza brachyantha]
Length = 503
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 206/415 (49%), Positives = 288/415 (69%), Gaps = 39/415 (9%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
EK+K+A+LLALPP+GSEV+ GG+ D S EDL+ LCEP+G+V EVR+MK K+ +S+G+A
Sbjct: 104 EKEKYAELLALPPHGSEVYFGGISSDISSEDLKKLCEPVGEVVEVRMMKGKD--DSRGYA 161
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+FR+K+ A +A+ EL++ +LKGK IR S S+ KN+LFIGNVP +WT+D+FRK +E+VG
Sbjct: 162 FVTFRTKDLALEAVRELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTQDDFRKAVEEVG 221
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQKM FKLD N PT+SWADPK+
Sbjct: 222 PGVLKADLMKV-SSTNRNRGYGFVEYYNHACAEYARQKMSTPTFKLDTNAPTVSWADPKN 280
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
+ SA+ SQVK++YVKN+P N + ++K LF+RHGE+TKVV+PP + G + +GF+H+
Sbjct: 281 --NDSASTSQVKSVYVKNLPKNVTQAQLKNLFERHGEITKVVLPPSRGGHDNRYGFVHFK 338
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKP-QTDKKTEG-TFPYSPG--LVPTHLPHAGYG 386
+RS A++A+++TE+YE+ GQVL+ LAKP TDKK E + P S G L+P++ P GYG
Sbjct: 339 DRSMAMRALQNTERYELAGQVLDCSLAKPAATDKKDERVSLPSSNGAPLLPSY-PPLGYG 397
Query: 387 GFAGTPYGSVGTGFGVA-AGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMP 445
SV + +GVA A QPM+Y P G MVPM+LPDG++ YV+QQPG Q+P
Sbjct: 398 IM------SVPSAYGVAPASITQPMLYAPR-APPGPAMVPMMLPDGRLVYVVQQPGGQLP 450
Query: 446 --PPRPRRV----------------DRSNGPGGRGGRGGSSGGDDGNRGRRYRPY 482
P P++ + PG + RG + N+GRR RPY
Sbjct: 451 LSSPPPQQAGRHGGSGGRHGGGGGGSSGSRPGAKRQRGDDTSSSR-NKGRR-RPY 503
>gi|78707789|gb|ABB46764.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|78707790|gb|ABB46765.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215694736|dbj|BAG89927.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 438
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/302 (62%), Positives = 242/302 (80%), Gaps = 6/302 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E+EK K +LLALPP GSEVFIGGLP+D +E+DL +LCE G++ EVRLMKDKE+ E+KG
Sbjct: 92 EEEKRKWDELLALPPQGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKG 151
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
FAFV+F K+ A++AI++LH KE KG+T+RCSLS+ K+RLF+GNVPK +EDE R +I+
Sbjct: 152 FAFVTFTGKDGAQRAIEDLHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELRNIIQG 211
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
GPGV IE+ KD +PSRNRGF FV YYN+ACADY++QK+ NFK+DG+ T+SWA+P
Sbjct: 212 KGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAEP 271
Query: 270 K--STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGF 326
K S+ D S+AA+QVK +YVKN+P+N S EKIKE+F+ HGEVTKVV+PP K+G KRDFGF
Sbjct: 272 KGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRDFGF 331
Query: 327 IHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYG 386
+H+AERSSALKAVK +EKYEIDGQVLEV +AKP DKK + +F PG P + P YG
Sbjct: 332 VHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLGDKKPDHSF--KPGGAP-NFPLPPYG 388
Query: 387 GF 388
G+
Sbjct: 389 GY 390
>gi|125535710|gb|EAY82198.1| hypothetical protein OsI_37401 [Oryza sativa Indica Group]
Length = 783
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/364 (52%), Positives = 266/364 (73%), Gaps = 19/364 (5%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
EK KHA+LLALPP+GSEV++GG+ D S EDL+ LCEP+G+V EVR+M+ K+ +S+G+A
Sbjct: 96 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 153
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+FR+K A KA+ EL++ +LKGK IR S S+ KN+LFIGNVP +WT+D+FRKV+E+VG
Sbjct: 154 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 213
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQ+M + FKLD N PT+SWADPK+
Sbjct: 214 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 272
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
+ SA+ SQVK++YVKN+P N + ++K LF+ HGE+ KVV+PP + G + +GF+H+
Sbjct: 273 --NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFK 330
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKP-QTDKKTEGT-FPYSPG--LVPTHLPHAGYG 386
+RS A++A+++TE+YE+DGQVL+ LAKP DKK + P S G L+P++ P GYG
Sbjct: 331 DRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSY-PPLGYG 389
Query: 387 GFAGTPYGSVGTGFGVA-AGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMP 445
SV +G A A QPM+Y P G MVPM+LPDG++ YV+QQPG Q+P
Sbjct: 390 IM------SVPGAYGAAPASTAQPMLYAPR-APPGAAMVPMMLPDGRLVYVVQQPGGQLP 442
Query: 446 PPRP 449
P
Sbjct: 443 LASP 446
>gi|346703741|emb|CBX24409.1| hypothetical_protein [Oryza glaberrima]
Length = 502
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/360 (52%), Positives = 265/360 (73%), Gaps = 19/360 (5%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
EK KHA+LLALPP+GSEV++GG+ D S EDL+ LCEP+G+V EVR+M+ K+ +S+G+A
Sbjct: 96 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 153
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+FR+K A KA+ EL++ +LKGK IR S S+ KN+LFIGNVP +WT+D+FRKV+E+VG
Sbjct: 154 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 213
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQ+M + FKLD N PT+SWADPK+
Sbjct: 214 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 272
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
+ SA+ SQVK++YVKN+P N + ++K LF+ HGE+ KVV+PP + G + +GF+H+
Sbjct: 273 --NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFK 330
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAK-PQTDKKTEGT-FPYSPG--LVPTHLPHAGYG 386
+RS A++A+++TE+YE+DGQVL+ LAK P DKK + P S G L+P++ P GYG
Sbjct: 331 DRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSY-PPLGYG 389
Query: 387 GFAGTPYGSVGTGFGVA-AGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMP 445
SV +G A A QPM+Y P G MVPM+LPDG++ YV+QQPG Q+P
Sbjct: 390 IM------SVPGAYGAAPASTAQPMLYAPR-APPGAAMVPMMLPDGRLVYVVQQPGGQLP 442
>gi|108862165|gb|ABA95754.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108862166|gb|ABG21876.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 502
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/360 (52%), Positives = 265/360 (73%), Gaps = 19/360 (5%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
EK KHA+LLALPP+GSEV++GG+ D S EDL+ LCEP+G+V EVR+M+ K+ +S+G+A
Sbjct: 96 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 153
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+FR+K A KA+ EL++ +LKGK IR S S+ KN+LFIGNVP +WT+D+FRKV+E+VG
Sbjct: 154 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 213
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQ+M + FKLD N PT+SWADPK+
Sbjct: 214 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 272
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
+ SA+ SQVK++YVKN+P N + ++K LF+ HGE+ KVV+PP + G + +GF+H+
Sbjct: 273 --NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFK 330
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAK-PQTDKKTEGT-FPYSPG--LVPTHLPHAGYG 386
+RS A++A+++TE+YE+DGQVL+ LAK P DKK + P S G L+P++ P GYG
Sbjct: 331 DRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSY-PPLGYG 389
Query: 387 GFAGTPYGSVGTGFGVA-AGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMP 445
SV +G A A QPM+Y P G MVPM+LPDG++ YV+QQPG Q+P
Sbjct: 390 IM------SVPGAYGAAPASTAQPMLYAPR-APPGAAMVPMMLPDGRLVYVVQQPGGQLP 442
>gi|357153147|ref|XP_003576354.1| PREDICTED: polyadenylate-binding protein 3-like [Brachypodium
distachyon]
Length = 582
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/369 (52%), Positives = 259/369 (70%), Gaps = 20/369 (5%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KDKHA+LL LPP+GSEV++GG+ DA+ EDL++LCEP+G+V EVR+M K ESKG+A
Sbjct: 167 DKDKHAELLGLPPHGSEVYLGGISNDATSEDLKELCEPVGEVVEVRIMPGKR--ESKGYA 224
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
F++F++K+ A KAI++L +K KGK IR S S+ KN+LF+GNVP +W+ D+ +K +E+VG
Sbjct: 225 FITFKTKDLALKAIEKLSNKTFKGKKIRVSSSQAKNKLFVGNVPNSWSHDDLKKAVEEVG 284
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV I+LIKDP+ RNRG+ FV YYNNACA+YSRQKM NFKLD N PT+SWADPK+
Sbjct: 285 PGVLKIDLIKDPRT-DRNRGYGFVEYYNNACAEYSRQKMSTPNFKLDTNAPTVSWADPKN 343
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
SA+ SQVK++YVKN+P N + ++K+LF+ HGE+TK+V+PP K G + +GF+H+
Sbjct: 344 --GDSASTSQVKSVYVKNLPKNVTQGQLKKLFEHHGEITKIVLPPSKDGHDNRYGFVHFK 401
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTH---LPHA--GY 385
+R A+KA+K+TEKYE+DGQ+L+ LAKP DKK + S L HA GY
Sbjct: 402 DRHMAMKALKNTEKYELDGQLLDCSLAKPPADKKDDTVSVSSSHKSSAKGGPLLHAPLGY 461
Query: 386 GGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQM- 444
G +G A QPM+Y G P G MVPM+LPDG++ YV+QQP Q
Sbjct: 462 GIMPRPDAYGAPPSYGAA----QPMLYAPG-APPGAAMVPMLLPDGRLVYVVQQPAPQQH 516
Query: 445 ---PPPRPR 450
PPP+ R
Sbjct: 517 FASPPPQAR 525
>gi|222616602|gb|EEE52734.1| hypothetical protein OsJ_35153 [Oryza sativa Japonica Group]
Length = 558
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/364 (52%), Positives = 266/364 (73%), Gaps = 19/364 (5%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
EK KHA+LLALPP+GSEV++GG+ D S EDL+ LCEP+G+V EVR+M+ K+ +S+G+A
Sbjct: 96 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 153
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+FR+K A KA+ EL++ +LKGK IR S S+ KN+LFIGNVP +WT+D+FRKV+E+VG
Sbjct: 154 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 213
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQ+M + FKLD N PT+SWADPK+
Sbjct: 214 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 272
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
+ SA+ SQVK++YVKN+P N + ++K LF+ HGE+ KVV+PP + G + +GF+H+
Sbjct: 273 --NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFK 330
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAK-PQTDKKTEGT-FPYSPG--LVPTHLPHAGYG 386
+RS A++A+++TE+YE+DGQVL+ LAK P DKK + P S G L+P++ P GYG
Sbjct: 331 DRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSY-PPLGYG 389
Query: 387 GFAGTPYGSVGTGFGVA-AGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMP 445
SV +G A A QPM+Y P G MVPM+LPDG++ YV+QQPG Q+P
Sbjct: 390 IM------SVPGAYGAAPASTAQPMLYAPR-APPGAAMVPMMLPDGRLVYVVQQPGGQLP 442
Query: 446 PPRP 449
P
Sbjct: 443 LASP 446
>gi|115487230|ref|NP_001066102.1| Os12g0136200 [Oryza sativa Japonica Group]
gi|113648609|dbj|BAF29121.1| Os12g0136200, partial [Oryza sativa Japonica Group]
Length = 515
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 190/360 (52%), Positives = 265/360 (73%), Gaps = 19/360 (5%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
EK KHA+LLALPP+GSEV++GG+ D S EDL+ LCEP+G+V EVR+M+ K+ +S+G+A
Sbjct: 109 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 166
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+FR+K A KA+ EL++ +LKGK IR S S+ KN+LFIGNVP +WT+D+FRKV+E+VG
Sbjct: 167 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 226
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQ+M + FKLD N PT+SWADPK+
Sbjct: 227 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 285
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
+ SA+ SQVK++YVKN+P N + ++K LF+ HGE+ KVV+PP + G + +GF+H+
Sbjct: 286 --NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFK 343
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAK-PQTDKKTEGT-FPYSPG--LVPTHLPHAGYG 386
+RS A++A+++TE+YE+DGQVL+ LAK P DKK + P S G L+P++ P GYG
Sbjct: 344 DRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSY-PPLGYG 402
Query: 387 GFAGTPYGSVGTGFGVA-AGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMP 445
SV +G A A QPM+Y P G MVPM+LPDG++ YV+QQPG Q+P
Sbjct: 403 IM------SVPGAYGAAPASTAQPMLYAPR-APPGAAMVPMMLPDGRLVYVVQQPGGQLP 455
>gi|124359745|gb|ABD32695.2| RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding
EF-hand [Medicago truncatula]
Length = 559
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 184/322 (57%), Positives = 248/322 (77%), Gaps = 4/322 (1%)
Query: 1 MAESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGAS 60
M+E E++DRVDL+E+NYMEEMDDDVEEQ+++D + G D N E + ++ EY+ + A A
Sbjct: 1 MSEGAEIDDRVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEETAAEAG 60
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120
+KDQ E ++D EE+E A + E+E++KH +LL+ PP+GSEVFIGGLP+D S+
Sbjct: 61 QKDQFPEGEKSDHGA---EEDELKPALIDEEEREKHDELLSRPPHGSEVFIGGLPRDTSD 117
Query: 121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
+D+R+LCEP+GD+ E++L+KD+E+GESKG+AFV +++KE A+KAID++H+KE KGKT+RC
Sbjct: 118 DDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRC 177
Query: 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
LSETK+RLFIGN+PK WTEDEFRK +E VGPGVE+I+LIKDPQN SRNRGF+FVLYYNN
Sbjct: 178 LLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNN 237
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI-PDNTSTEKI 299
ACAD+SRQKM + FKLDG TPT++WADPK++PD SAAASQ V+ + T +
Sbjct: 238 ACADFSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQFYRTAVQPVLLYGTECWAV 297
Query: 300 KELFQRHGEVTKVVMPPGKSGK 321
K + V ++ M SGK
Sbjct: 298 KSQHENQVSVAEMRMLRWMSGK 319
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/173 (77%), Positives = 150/173 (86%), Gaps = 3/173 (1%)
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGKRDFGFIHYAERSSALKAVK 340
VKALYVKNIP+N +TE++KELF+RHGEVTKVVMPPGK SGKRDFGFIHYAERSSALKAVK
Sbjct: 359 VKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVK 418
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGS--VGT 398
+TEKYEIDGQ LEVV+AKPQ +KK +G + Y+PGL P HLPH GYG F+G YGS G
Sbjct: 419 ETEKYEIDGQALEVVIAKPQAEKKPDGGYAYNPGLHPNHLPHPGYGNFSGNLYGSVGAGY 478
Query: 399 GFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRR 451
G AA +QQPMIYGRGPMP+GM MVPMVLPDG+IGYVLQQPGVQ+P PRPRR
Sbjct: 479 GVAAAAAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPGPRPRR 531
>gi|29371361|gb|AAO72701.1| putative RNA-binding protein [Oryza sativa Japonica Group]
Length = 476
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 190/360 (52%), Positives = 265/360 (73%), Gaps = 19/360 (5%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
EK KHA+LLALPP+GSEV++GG+ D S EDL+ LCEP+G+V EVR+M+ K+ +S+G+A
Sbjct: 108 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 165
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+FR+K A KA+ EL++ +LKGK IR S S+ KN+LFIGNVP +WT+D+FRKV+E+VG
Sbjct: 166 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 225
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQ+M + FKLD N PT+SWADPK+
Sbjct: 226 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 284
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
+ SA+ SQVK++YVKN+P N + ++K LF+ HGE+ KVV+PP + G + +GF+H+
Sbjct: 285 --NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFK 342
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKP-QTDKKTEGT-FPYSPG--LVPTHLPHAGYG 386
+RS A++A+++TE+YE+DGQVL+ LAKP DKK + P S G L+P++ P GYG
Sbjct: 343 DRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSY-PPLGYG 401
Query: 387 GFAGTPYGSVGTGFGVA-AGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMP 445
SV +G A A QPM+Y P G MVPM+LPDG++ YV+QQPG Q+P
Sbjct: 402 IM------SVPGAYGAAPASTAQPMLYAPR-APPGAAMVPMMLPDGRLVYVVQQPGGQLP 454
>gi|222615491|gb|EEE51623.1| hypothetical protein OsJ_32902 [Oryza sativa Japonica Group]
Length = 1042
Score = 363 bits (933), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 189/365 (51%), Positives = 264/365 (72%), Gaps = 21/365 (5%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
EK KHA+LLALPP+GSEV++GG+ D S EDL+ LCEP+G+V EVR+M+ K+ +S+G+A
Sbjct: 474 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 531
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+FR+K A K + EL++ +LKGK IR S S+ KN+LFIGNVP +WT+D+FRK +E+VG
Sbjct: 532 FVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVG 591
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQ+M + FKLD N PT+SWADPK+
Sbjct: 592 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 650
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
+ S + SQVK++YVKN+P N + ++K LF+ HGE+ KVV+PP + G + +GF+H+
Sbjct: 651 --NDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFK 708
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAK-PQTDKKTEGT-FPYSPG--LVPTHLPHAGYG 386
+RS A++A+++TE+YE+DGQVL+ LAK P DKK + P S G L+P++ P GYG
Sbjct: 709 DRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSY-PPLGYG 767
Query: 387 GFAGTPYGSVGTGFGVA-AGFQQPMIYG-RGPMPSGMHMVPMVLPDGQIGYVLQQPGVQM 444
SV +G A A QPM+Y R P G MVPM+LPDG++ YV+QQPG Q+
Sbjct: 768 IM------SVPGAYGAAPASTAQPMLYAPRA--PPGAAMVPMMLPDGRLVYVVQQPGGQL 819
Query: 445 PPPRP 449
P P
Sbjct: 820 PLASP 824
>gi|242067347|ref|XP_002448950.1| hypothetical protein SORBIDRAFT_05g002300 [Sorghum bicolor]
gi|241934793|gb|EES07938.1| hypothetical protein SORBIDRAFT_05g002300 [Sorghum bicolor]
Length = 498
Score = 360 bits (925), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 190/383 (49%), Positives = 267/383 (69%), Gaps = 32/383 (8%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E+EK+KHA+LLALPP+G+EV++GGL D S EDL+ L E +G+V EVR+ + G++K
Sbjct: 87 ENEKEKHAELLALPPHGAEVYVGGLSSDVSSEDLKRLFESVGEVVEVRM---RGKGDNKA 143
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
+AF++FR+KE A KAI +L +K+LKGK I+ S S+ KNRLFIGNVP++WT D+F+ +E+
Sbjct: 144 YAFINFRTKEMALKAIRKLCNKDLKGKKIKVSSSQAKNRLFIGNVPRDWTPDDFKTAVEE 203
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
VGPGV ++L+K P + RN+G+ F+ YYN ACA+Y++QKM FKLD N PT+SWADP
Sbjct: 204 VGPGVLQVDLMKAPGS-GRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADP 262
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIH 328
K+ + + + +QVK+LYVKNIP + E++K+LF+ GE+TKVV+PP KSG + +GF+H
Sbjct: 263 KNA-NEATSTAQVKSLYVKNIPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENRYGFVH 321
Query: 329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEG-TFPYSPG--LVPTHLPHAGY 385
+ ERS A+KA+K+TE+YE+DGQ+L+ LAKP DKK + + P + G L+P++ P GY
Sbjct: 322 FKERSMAMKALKNTERYELDGQLLDCSLAKPPADKKDDTVSAPTAKGAPLLPSYAP-LGY 380
Query: 386 G----------GFAGTPYGSVGTGFGVAAGF-----QQPMIYGRGPMPSGMHMVPMVLPD 430
G G AG Y +G+G A G QPM+Y G P G M+PMVLPD
Sbjct: 381 GLVGAYNPLGNGLAGA-YNPLGSGLAGAYGVLSARAAQPMLYAPG-APPGSTMIPMVLPD 438
Query: 431 GQIGYVLQQPG-----VQMPPPR 448
G++ YV Q G V PPP+
Sbjct: 439 GRLVYVPQTAGQQPVHVTSPPPQ 461
>gi|125533325|gb|EAY79873.1| hypothetical protein OsI_35035 [Oryza sativa Indica Group]
Length = 1181
Score = 357 bits (916), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 191/389 (49%), Positives = 267/389 (68%), Gaps = 38/389 (9%)
Query: 68 ANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLC 127
++ D EK KHA+LLALPP+GSEV++GG+ D S EDL+ LC
Sbjct: 498 VHQKD-----------------VTEKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLC 540
Query: 128 EPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
EP+G+V EVR+M+ K+ +S+G+AFV+FR+K A K + EL++ +LKGK IR S S+ KN
Sbjct: 541 EPVGEVVEVRMMRGKD--DSRGYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKN 598
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LFIGNVP +WT+D+FRK +E+VGPGV +L+K + +RNRG+ FV YYN+ACA+Y+R
Sbjct: 599 KLFIGNVPHSWTDDDFRKAVEEVGPGVLKADLMK-VSSANRNRGYGFVEYYNHACAEYAR 657
Query: 248 QKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
Q+M + FKLD N PT+SWADPK+ + SA+ SQVK++YVKN+P N + ++K LF+ HG
Sbjct: 658 QEMSSPTFKLDSNAPTVSWADPKN--NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHG 715
Query: 308 EVTKVVMPPGKSGKRD-FGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK-PQTDKKT 365
E+ KVV+PP + G + +GF+H+ +RS A++A+++TE+YE+DGQVL+ LAK P DKK
Sbjct: 716 EIEKVVLPPSRGGHDNRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKD 775
Query: 366 EGT-FPYSPG--LVPTHLPHAGYGGFAGTPYGSVGTGFGVA-AGFQQPMIYG-RGPMPSG 420
+ P S G L+P++ P GYG SV +G A A QPM+Y R P G
Sbjct: 776 DRVPLPSSNGAPLLPSY-PPLGYGIM------SVPGAYGAAPASTAQPMLYAPRA--PPG 826
Query: 421 MHMVPMVLPDGQIGYVLQQPGVQMPPPRP 449
MVPM+LPDG + YV+QQPG Q+P P
Sbjct: 827 AAMVPMMLPDGHLVYVVQQPGGQLPLASP 855
>gi|346703160|emb|CBX25259.1| hypothetical_protein [Oryza brachyantha]
Length = 455
Score = 353 bits (907), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 181/350 (51%), Positives = 260/350 (74%), Gaps = 20/350 (5%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
EK+ +A+LLALPP+GSEV++GG+ D S +DL+ LCEP+G+V EVR+MK K+ +S+G+A
Sbjct: 76 EKENYAELLALPPHGSEVYVGGISSDISSQDLKKLCEPVGEVVEVRMMKGKD--DSRGYA 133
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+FR+K+ A +A+ EL++ +LKGK IR S S+ KN+LFIGNVP +WT+D+FRK +E+VG
Sbjct: 134 FVTFRTKDLALEAVRELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTQDDFRKAVEEVG 193
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQKM FKLD N PT+SWADPK+
Sbjct: 194 PGVLKADLMKV-SSTNRNRGYGFVEYYNHACAEYARQKMSTPTFKLDTNAPTVSWADPKN 252
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
+ SA+ SQVK++YVKN+P N + ++K+LF+ HG++TKVV+PP + G + +GF+H+
Sbjct: 253 --NDSASTSQVKSVYVKNLPKNVTQAELKKLFEHHGDITKVVLPPSRGGHDNRYGFVHFK 310
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKP-QTDKKTEG-TFPYSPG--LVPTHLPHAGYG 386
+RS A++A+++TE+YE+ GQVL+ LAKP TDKK E + P S G L+P++ P GYG
Sbjct: 311 DRSMAMRALQNTERYELAGQVLDCSLAKPAATDKKDERVSLPSSNGAPLLPSY-PPLGYG 369
Query: 387 GFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYV 436
SV + +GVA +PM+Y P G MVPM+LPDG++ YV
Sbjct: 370 IM------SVPSAYGVAPA--RPMLYAPR-APPGPAMVPMMLPDGRLVYV 410
>gi|242084538|ref|XP_002442694.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
gi|241943387|gb|EES16532.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
Length = 491
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 192/387 (49%), Positives = 266/387 (68%), Gaps = 29/387 (7%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGES-K 148
EDEK+ HA+LL+LPP+GSEV++GG+ D S +DLR LCE IG+V EVR+ G+S K
Sbjct: 80 EDEKESHAELLSLPPHGSEVYVGGISSDVSSDDLRKLCESIGEVVEVRM-----PGKSGK 134
Query: 149 GFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIE 208
+AFV+FR+KE A KAI +L++K+LKGK IR S S+ KNRLFIGN+P WTED F++ +E
Sbjct: 135 LYAFVNFRTKELAVKAIQKLNNKDLKGKKIRVSSSQAKNRLFIGNIPYKWTEDIFKEAVE 194
Query: 209 DVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWAD 268
+VGPGV + L+K P++ + N+G+ F+ YYN ACA+Y+++KM FKLD N P +SWAD
Sbjct: 195 EVGPGVVKVNLVKAPRSDT-NKGYGFIEYYNQACAEYAKKKMSTPEFKLDKNAPNVSWAD 253
Query: 269 PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFI 327
K+ + SA+ SQVK+LY+KN+P + E++K LF+ GEVTKVV+PP K+G + +GF+
Sbjct: 254 TKNGGE-SASTSQVKSLYIKNLPKTVTQEQLKRLFEHLGEVTKVVIPPAKAGHENRYGFV 312
Query: 328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGT-FPYSPGLVPTHLPHAGYG 386
H+ ERS A+KA+KDTE+YE+DG +L+ LAKP +KK + T P L+P++ P GYG
Sbjct: 313 HFKERSMAMKALKDTERYELDGHLLDCSLAKPLAEKKDDTTSVPKGGPLLPSYTP-LGYG 371
Query: 387 ----------GFAGT--PYGS-VGTGFGV-AAGFQQPMIYGRGPMPSGMHMVPMVLPDGQ 432
G AG P+G+ V +GV A QPM+Y G P G M+PMVLPDG+
Sbjct: 372 LMGAYNPLGNGLAGAYNPHGNGVAGAYGVLGAQAAQPMLYVPG-APLGSTMIPMVLPDGR 430
Query: 433 IGYVLQQPGVQMPP---PRPRRVDRSN 456
+ Y+ Q G Q P P P++ R N
Sbjct: 431 LVYLPQPAGQQTVPMTSPPPQKGGRHN 457
>gi|414588669|tpg|DAA39240.1| TPA: heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 506
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 181/373 (48%), Positives = 255/373 (68%), Gaps = 26/373 (6%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E+EK+KHA+LLALPP+G+EV++GG+ D S EDL+ L E +G+V EVR+ + G+++
Sbjct: 87 ENEKEKHAELLALPPHGAEVYVGGISSDVSSEDLKQLFESVGEVVEVRM---RGKGDNRT 143
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
+AF++FR+K A KAI L +K+LKGK I+ S S+ KNRLFIGNVP +WT D+F+ +E+
Sbjct: 144 YAFINFRTKAMALKAIQNLSNKDLKGKKIKVSPSQAKNRLFIGNVPHDWTHDDFKTAVEE 203
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
VGPGV +EL+K P RN+G+ F+ YYN ACA+Y++QKM FKLD N PT+SWADP
Sbjct: 204 VGPGVLKVELMKAP-GLDRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADP 262
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIH 328
K+ + + + +QVK+LYVKN+P + E++K+LF+ GE+TKVV+PP KSG + +GF+H
Sbjct: 263 KNA-NEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENRYGFVH 321
Query: 329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK-TEGTFPYSPG--LVPTHLPHAGY 385
+ ER A+KA+K+TE+YE+DGQ+L+ LAKP DKK + + P + G L+P++ P GY
Sbjct: 322 FKERYMAMKALKNTERYELDGQLLDCSLAKPPADKKDSTVSTPTAKGGPLLPSYAP-LGY 380
Query: 386 G----------GFAGTPYGSVGTGFGVAAGF-----QQPMIYGRGPMPSGMHMVPMVLPD 430
G G A +G G A G QPM+Y G P G M+PMVLPD
Sbjct: 381 GLVGAYNPRGKGLADAYNNPLGNGLAGAYGVLSARAAQPMVYAPG-APPGSTMIPMVLPD 439
Query: 431 GQIGYVLQQPGVQ 443
G++ YV Q G Q
Sbjct: 440 GRLVYVPQAAGQQ 452
>gi|226532808|ref|NP_001151969.1| LOC100285606 [Zea mays]
gi|195651435|gb|ACG45185.1| heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 469
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 181/373 (48%), Positives = 255/373 (68%), Gaps = 26/373 (6%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E+EK+KHA+LLALPP+G+EV++GG+ D S EDL+ L E +G+V EVR+ + G+++
Sbjct: 86 ENEKEKHAELLALPPHGAEVYVGGISSDVSSEDLKQLFESVGEVVEVRM---RGKGDNRT 142
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
+AF++FR+K A KAI L +K+LKGK I+ S S+ KNRLFIGNVP +WT D+F+ +E+
Sbjct: 143 YAFINFRTKAMALKAIQNLSNKDLKGKKIKVSPSQAKNRLFIGNVPHDWTHDDFKTAVEE 202
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
VGPGV +EL+K P RN+G+ F+ YYN ACA+Y++QKM FKLD N PT+SWADP
Sbjct: 203 VGPGVLKVELMKAP-GLDRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADP 261
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIH 328
K+ + + + +QVK+LYVKN+P + E++K+LF+ GE+TKVV+PP KSG + +GF+H
Sbjct: 262 KNA-NEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENRYGFVH 320
Query: 329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK-TEGTFPYSPG--LVPTHLPHAGY 385
+ ER A+KA+K+TE+YE+DGQ+L+ LAKP DKK + + P + G L+P++ P GY
Sbjct: 321 FKERYMAMKALKNTERYELDGQLLDCSLAKPPADKKDSTVSTPTAKGGPLLPSYAP-LGY 379
Query: 386 G----------GFAGTPYGSVGTGFGVAAGF-----QQPMIYGRGPMPSGMHMVPMVLPD 430
G G A +G G A G QPM+Y G P G M+PMVLPD
Sbjct: 380 GLVGAYNPRGKGLADAYNNPLGNGLAGAYGVLSARAAQPMVYAPG-APPGSTMIPMVLPD 438
Query: 431 GQIGYVLQQPGVQ 443
G++ YV Q G Q
Sbjct: 439 GRLVYVPQAAGQQ 451
>gi|238006198|gb|ACR34134.1| unknown [Zea mays]
gi|413924828|gb|AFW64760.1| hypothetical protein ZEAMMB73_682858 [Zea mays]
Length = 499
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 185/372 (49%), Positives = 257/372 (69%), Gaps = 27/372 (7%)
Query: 91 DEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF 150
+EK+KHA+LLALPP+G+EV++GGL D S EDL+ L E +G+V EVR+ + G++K +
Sbjct: 87 NEKEKHAELLALPPHGAEVYVGGLSSDVSSEDLKQLFESVGEVAEVRM---RGKGDNKTY 143
Query: 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDV 210
AF++FR+KE A KAI +L +K+LKGK I+ S S+ KNRLFIGNVP +WT D+F+ +E+V
Sbjct: 144 AFINFRTKEMALKAIQKLSNKDLKGKKIKVSSSQAKNRLFIGNVPHDWTPDDFKTAVEEV 203
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
GPGV ++L+K P + RN+G+ F+ YYN ACA+Y++QKM FKLD N PT+SWAD K
Sbjct: 204 GPGVLKVDLMKAPGS-GRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADHK 262
Query: 271 STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHY 329
+ + + + SQVK+LYVKN+P + E++K+LF+ GE+TKVV+PP KSG + +GF+H+
Sbjct: 263 NASE-ATSTSQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENRYGFVHF 321
Query: 330 AERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE-GTFPYSPG--LVPTHLPHAGYG 386
ERS +KA+K+TE+YE+DGQ+L+ AKP DKK + G+ P + G L P++ P GYG
Sbjct: 322 KERSMVMKALKNTERYELDGQLLDCSPAKPPADKKDDTGSSPTAKGRPLPPSYAP-LGYG 380
Query: 387 ----------GFAGTPYGSVGTGFGVAAGF-----QQPMIYGRGPMPSGMHMVPMVLPDG 431
G AG Y S G G A G QPM+Y G P G M+PMVLPDG
Sbjct: 381 LAGAYNPLGKGLAGA-YNSPGNGLAGAYGVLSAHAAQPMLYAPGASP-GSTMIPMVLPDG 438
Query: 432 QIGYVLQQPGVQ 443
++ YV Q G Q
Sbjct: 439 RLVYVPQTAGQQ 450
>gi|413924827|gb|AFW64759.1| hypothetical protein ZEAMMB73_682858 [Zea mays]
Length = 509
Score = 347 bits (891), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 185/372 (49%), Positives = 257/372 (69%), Gaps = 27/372 (7%)
Query: 91 DEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF 150
+EK+KHA+LLALPP+G+EV++GGL D S EDL+ L E +G+V EVR+ + G++K +
Sbjct: 97 NEKEKHAELLALPPHGAEVYVGGLSSDVSSEDLKQLFESVGEVAEVRM---RGKGDNKTY 153
Query: 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDV 210
AF++FR+KE A KAI +L +K+LKGK I+ S S+ KNRLFIGNVP +WT D+F+ +E+V
Sbjct: 154 AFINFRTKEMALKAIQKLSNKDLKGKKIKVSSSQAKNRLFIGNVPHDWTPDDFKTAVEEV 213
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
GPGV ++L+K P + RN+G+ F+ YYN ACA+Y++QKM FKLD N PT+SWAD K
Sbjct: 214 GPGVLKVDLMKAPGS-GRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADHK 272
Query: 271 STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHY 329
+ + + + SQVK+LYVKN+P + E++K+LF+ GE+TKVV+PP KSG + +GF+H+
Sbjct: 273 NASE-ATSTSQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENRYGFVHF 331
Query: 330 AERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE-GTFPYSPG--LVPTHLPHAGYG 386
ERS +KA+K+TE+YE+DGQ+L+ AKP DKK + G+ P + G L P++ P GYG
Sbjct: 332 KERSMVMKALKNTERYELDGQLLDCSPAKPPADKKDDTGSSPTAKGRPLPPSYAP-LGYG 390
Query: 387 ----------GFAGTPYGSVGTGFGVAAGF-----QQPMIYGRGPMPSGMHMVPMVLPDG 431
G AG Y S G G A G QPM+Y G P G M+PMVLPDG
Sbjct: 391 LAGAYNPLGKGLAGA-YNSPGNGLAGAYGVLSAHAAQPMLYAPGASP-GSTMIPMVLPDG 448
Query: 432 QIGYVLQQPGVQ 443
++ YV Q G Q
Sbjct: 449 RLVYVPQTAGQQ 460
>gi|414588668|tpg|DAA39239.1| TPA: hypothetical protein ZEAMMB73_667091 [Zea mays]
Length = 445
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 178/366 (48%), Positives = 252/366 (68%), Gaps = 26/366 (7%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E+EK+KHA+LLALPP+G+EV++GG+ D S EDL+ L E +G+V EVR+ + G+++
Sbjct: 87 ENEKEKHAELLALPPHGAEVYVGGISSDVSSEDLKQLFESVGEVVEVRM---RGKGDNRT 143
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209
+AF++FR+K A KAI L +K+LKGK I+ S S+ KNRLFIGNVP +WT D+F+ +E+
Sbjct: 144 YAFINFRTKAMALKAIQNLSNKDLKGKKIKVSPSQAKNRLFIGNVPHDWTHDDFKTAVEE 203
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
VGPGV +EL+K P RN+G+ F+ YYN ACA+Y++QKM FKLD N PT+SWADP
Sbjct: 204 VGPGVLKVELMKAP-GLDRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADP 262
Query: 270 KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIH 328
K+ + + + +QVK+LYVKN+P + E++K+LF+ GE+TKVV+PP KSG + +GF+H
Sbjct: 263 KNA-NEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENRYGFVH 321
Query: 329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK-TEGTFPYSPG--LVPTHLPHAGY 385
+ ER A+KA+K+TE+YE+DGQ+L+ LAKP DKK + + P + G L+P++ P GY
Sbjct: 322 FKERYMAMKALKNTERYELDGQLLDCSLAKPPADKKDSTVSTPTAKGGPLLPSYAP-LGY 380
Query: 386 G----------GFAGTPYGSVGTGFGVAAGF-----QQPMIYGRGPMPSGMHMVPMVLPD 430
G G A +G G A G QPM+Y G P G M+PMVLPD
Sbjct: 381 GLVGAYNPRGKGLADAYNNPLGNGLAGAYGVLSARAAQPMVYAPG-APPGSTMIPMVLPD 439
Query: 431 GQIGYV 436
G++ YV
Sbjct: 440 GRLVYV 445
>gi|413915907|gb|AFW55839.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
gi|413915908|gb|AFW55840.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
Length = 492
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 180/378 (47%), Positives = 252/378 (66%), Gaps = 31/378 (8%)
Query: 86 ASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG 145
A E K H +LLALPP+GSEV++GG+ D S +DL+ LCE +G+V EVR+ G
Sbjct: 75 ADTDEGGKGSHDELLALPPHGSEVYVGGIASDVSSDDLKKLCESVGEVVEVRM-----PG 129
Query: 146 ES-KGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFR 204
+S + +AFV+FR+KE A KAI +L++K+LKGK IR S S+ KNRLFIGN+P NWTE+EF+
Sbjct: 130 KSGRLYAFVNFRTKELASKAIQKLNNKDLKGKKIRVSSSQAKNRLFIGNIPYNWTENEFK 189
Query: 205 KVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264
K E+VGPGV + L+K P + + N+G+ F+ YYN ACA+Y+++ M FKLD N P +
Sbjct: 190 KAAEEVGPGVLKVNLVKAPHSDT-NKGYGFIEYYNQACAEYAKKMMSTPEFKLDKNAPNV 248
Query: 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD- 323
SWAD K+ + SA+ +QVK+LYVKN+P + E++K+LF+ GEVTKVV+PP K+G +
Sbjct: 249 SWADTKNGGE-SASTAQVKSLYVKNLPKAVTQEQLKKLFEHLGEVTKVVIPPAKAGHENR 307
Query: 324 FGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHA 383
+GF+H+ ERS A+KA++DTE++E+DGQ+L+ LAKP DKK + + P L+P++ P
Sbjct: 308 YGFVHFKERSMAMKALEDTERFELDGQLLDCSLAKPLADKKDDTSAPKGGPLLPSYTP-V 366
Query: 384 GYGGFAGTPYGSVGTGFGVAAGFQ------------------QPMIYGRGPMPSGMHMVP 425
GYG Y +G G VA + QPM+Y G P G M+P
Sbjct: 367 GYGLMGA--YNPLGNGLAVAGAYNPYGNGLAGAYGVLGAHAAQPMLYVPG-APPGSTMIP 423
Query: 426 MVLPDGQIGYVLQQPGVQ 443
MVLPDG++ YV Q G Q
Sbjct: 424 MVLPDGRLVYVPQPAGQQ 441
>gi|108863978|gb|ABA91387.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 501
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 183/377 (48%), Positives = 255/377 (67%), Gaps = 45/377 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
EK KHA+LLALPP+GSEV++GG+ D S EDL+ LCEP+G+V EVR+M+ K+ +S+G+A
Sbjct: 95 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 152
Query: 152 FVSFRSK-------------EFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW 198
FV+FR+K + KGK IR S S+ KN+LFIGNVP +W
Sbjct: 153 FVNFRTKGLALKVVKELNNAKL-------------KGKRIRVSSSQAKNKLFIGNVPHSW 199
Query: 199 TEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258
T+D+FRK +E+VGPGV +L+K + +RNRG+ FV YYN+ACA+Y+RQ+M + FKLD
Sbjct: 200 TDDDFRKAVEEVGPGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLD 258
Query: 259 GNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK 318
N PT+SWADPK+ + S + SQVK++YVKN+P N + ++K LF+ HGE+ KVV+PP +
Sbjct: 259 SNAPTVSWADPKN--NDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSR 316
Query: 319 SGKRD-FGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK-PQTDKKTEGT-FPYSPG- 374
G + +GF+H+ +RS A++A+++TE+YE+DGQVL+ LAK P DKK + P S G
Sbjct: 317 GGHDNRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGA 376
Query: 375 -LVPTHLPHAGYGGFAGTPYGSVGTGFGVA-AGFQQPMIYGRGPMPSGMHMVPMVLPDGQ 432
L+P++ P GYG SV +G A A QPM+Y P G MVPM+LPDG+
Sbjct: 377 PLLPSY-PPLGYGIM------SVPGAYGAAPASTAQPMLYAPR-APPGAAMVPMMLPDGR 428
Query: 433 IGYVLQQPGVQMPPPRP 449
+ YV+QQPG Q+P P
Sbjct: 429 LVYVVQQPGGQLPLASP 445
>gi|116788096|gb|ABK24755.1| unknown [Picea sitchensis]
Length = 506
Score = 337 bits (864), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 172/368 (46%), Positives = 246/368 (66%), Gaps = 20/368 (5%)
Query: 98 QLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRS 157
+LLA PP+G+EVF+G LP++ ++EDL LCE G+VF+V + ++ E +AFV+F +
Sbjct: 120 ELLARPPHGTEVFVGNLPRNITKEDLTSLCEQHGEVFDVIIKREASKLE---YAFVTFTT 176
Query: 158 KEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
KE AKKAI+ L+ E K K +R S S+ KNRLF+GN+P N E+E K++ + GPG + +
Sbjct: 177 KESAKKAIETLNGFEFKDKKLRVSESQPKNRLFLGNIPSNLKEEELTKIVSEQGPGYQHL 236
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
ELIKDP++ +RNRGF+FV YYN CA+ + + M ++ F+LD T+ WA + +
Sbjct: 237 ELIKDPKDTTRNRGFAFVEYYNKGCAEKAMKNMTHSKFQLDDKLITVKWATSQRS----- 291
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSA 335
++ +VK++YV+N+P+N + E+++ELF RHGEVTKVV+ K G KRDFGF+HYA+ SSA
Sbjct: 292 SSEEVKSVYVRNLPENVTEEQLRELFGRHGEVTKVVLLEQKPGQPKRDFGFVHYADHSSA 351
Query: 336 LKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGT---FPYSPGLVPTHLPHAGYGGFAGTP 392
+KA++ TEKY ++ + L V LA+P +DKK + + L P AGYG
Sbjct: 352 MKAIEKTEKYTLEDRELSVSLARPLSDKKPQNMGNPTSFQRPLFSNFQPQAGYG------ 405
Query: 393 YGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRRV 452
Y GFG + G+ QP+IYGRGP P GM MVPM+LPDG++GYVLQQPG + P R
Sbjct: 406 YNPNMYGFG-SMGYTQPVIYGRGPTPEGMTMVPMILPDGRVGYVLQQPGNAVGGSAPYRS 464
Query: 453 DRSNGPGG 460
+ S GG
Sbjct: 465 EGSASYGG 472
>gi|388509780|gb|AFK42956.1| unknown [Lotus japonicus]
Length = 232
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 169/234 (72%), Positives = 205/234 (87%), Gaps = 3/234 (1%)
Query: 250 MLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309
M +++FKL GNTPT++WADPK++PDHSA+ SQVKALYVKNIP+N +T+++KELF+RHGEV
Sbjct: 1 MSSSSFKLYGNTPTVTWADPKNSPDHSAS-SQVKALYVKNIPENVTTDQLKELFRRHGEV 59
Query: 310 TKVVMPPGK-SGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGT 368
TKVVMPPGK GKRDFGFIH+AERSSALKAVK+TEKYEIDGQVLEVVLAKPQ +K+ +
Sbjct: 60 TKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPD-A 118
Query: 369 FPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVL 428
+ ++PG+ P HLPHAGYG ++G PYGS+GTG+G A +QQPM+YGRGPMP+GM MVPMVL
Sbjct: 119 YAFNPGVHPNHLPHAGYGSYSGNPYGSLGTGYGAAPAYQQPMMYGRGPMPAGMQMVPMVL 178
Query: 429 PDGQIGYVLQQPGVQMPPPRPRRVDRSNGPGGRGGRGGSSGGDDGNRGRRYRPY 482
PDG+IGYVLQQPGVQ+P RPRR +RSNGP G+ G GG G D+GNR RR+RPY
Sbjct: 179 PDGRIGYVLQQPGVQVPAARPRRNERSNGPSGQAGGGGGGGNDEGNRSRRFRPY 232
>gi|346703354|emb|CBX25451.1| hypothetical_protein [Oryza glaberrima]
Length = 558
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 179/364 (49%), Positives = 253/364 (69%), Gaps = 20/364 (5%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLC-EPIGDVFEVRLMKDKESGESKGFA 151
K KHA+LLALPP+GSEV++GG+ D S EDL+ LC V VR+M+ K+ +S+G+A
Sbjct: 152 KGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVVRMMRGKD--DSRGYA 209
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+FR+K A K + EL++ +LK IR S S+ KN+LFIGNVP +WT+D+FRK +E+VG
Sbjct: 210 FVNFRTKGLALKVVKELNNAKLK-VWIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVG 268
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
PGV +L+K + +RNRG+ FV YYN+ACA+Y+RQ+M + FKLD N PT+SWADPK+
Sbjct: 269 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 327
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYA 330
D ++ + VK++YVKN+P N + ++K LF+ HGE+ KVV+PP + G + +GF+H+
Sbjct: 328 N-DSASTSQVVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFK 386
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAK-PQTDKKTEGT-FPYSPG--LVPTHLPHAGYG 386
+RS A++A+++TE+YE+DGQVL+ LAK P DKK + P S G L+P++ P GYG
Sbjct: 387 DRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSY-PPLGYG 445
Query: 387 GFAGTPYGSVGTGFGVA-AGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMP 445
SV +G A A QPM+Y P G MVPM+LPDG++ YV+QQPG Q+P
Sbjct: 446 IM------SVPGAYGAAPASTAQPMLYAPR-APPGAAMVPMMLPDGRLVYVVQQPGGQLP 498
Query: 446 PPRP 449
P
Sbjct: 499 LASP 502
>gi|108863977|gb|ABG22355.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 361
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 156/314 (49%), Positives = 223/314 (71%), Gaps = 19/314 (6%)
Query: 138 LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKN 197
+M+ K+ +S+G+AFV+FR+K A K + EL++ +LKGK IR S S+ KN+LFIGNVP +
Sbjct: 1 MMRGKD--DSRGYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHS 58
Query: 198 WTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL 257
WT+D+FRK +E+VGPGV +L+K + +RNRG+ FV YYN+ACA+Y+RQ+M + FKL
Sbjct: 59 WTDDDFRKAVEEVGPGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKL 117
Query: 258 DGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG 317
D N PT+SWADPK+ + S + SQVK++YVKN+P N + ++K LF+ HGE+ KVV+PP
Sbjct: 118 DSNAPTVSWADPKN--NDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPS 175
Query: 318 KSGKRD-FGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK-PQTDKKTEGT-FPYSPG 374
+ G + +GF+H+ +RS A++A+++TE+YE+DGQVL+ LAK P DKK + P S G
Sbjct: 176 RGGHDNRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNG 235
Query: 375 --LVPTHLPHAGYGGFAGTPYGSVGTGFGVA-AGFQQPMIYGRGPMPSGMHMVPMVLPDG 431
L+P++ P GYG SV +G A A QPM+Y P G MVPM+LPDG
Sbjct: 236 APLLPSY-PPLGYGIM------SVPGAYGAAPASTAQPMLYAPR-APPGAAMVPMMLPDG 287
Query: 432 QIGYVLQQPGVQMP 445
++ YV+QQPG Q+P
Sbjct: 288 RLVYVVQQPGGQLP 301
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
+++FIG +P +++D R E +G V + LMK + ++G+ FV + + A+ A
Sbjct: 48 NKLFIGNVPHSWTDDDFRKAVEEVGPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYAR 107
Query: 166 DELHSKELK--GKTIRCSLSETKNR----------LFIGNVPKNWTEDEFRKVIEDVGPG 213
E+ S K S ++ KN +++ N+PKN T+ + +++ E G
Sbjct: 108 QEMSSPTFKLDSNAPTVSWADPKNNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHG-- 165
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
E +++ P + + FV + + + A + Q ++LDG S A P
Sbjct: 166 -EIEKVVLPPSRGGHDNRYGFVHFKDRSMAMRALQN--TERYELDGQVLDCSLAKP 218
>gi|384250281|gb|EIE23761.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 374
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 104/267 (38%), Positives = 176/267 (65%), Gaps = 11/267 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE-SKGFAFVSFRSKEFA 161
PP+G+EVF+GG+P+ A+E+ L+ E +G+V V L+KD ++ E ++GF FV F+++ A
Sbjct: 73 PPHGTEVFVGGIPRSATEDQLKVFAEAMGEVHAVVLLKDPQNNEQNRGFGFVKFKTRAAA 132
Query: 162 KKAIDELHSKELK---GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
A+++L K+L G+ +R + S++K++L++GN+P++ ++D + ++ V GVE IE
Sbjct: 133 TDALEKLAGKQLADFPGQNLRVAPSQSKHKLYVGNIPRDLSKDTLKAELDAVVKGVEVIE 192
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
L+ + P NRGF+F+ +YN+ACA ++ + + + G + +++A+PK
Sbjct: 193 LLMSKEYPGNNRGFAFIEFYNHACAQLAKNALSAPTYTMHGRSLNVAYAEPKGA--DQVP 250
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSAL 336
QVK++YV N+P + + K+KELF++ GEVTKVV+PP + K R+FGF+H++ERS
Sbjct: 251 TQQVKSVYVGNLPASANEAKLKELFEQFGEVTKVVIPPSRPDKPNREFGFVHFSERSVVE 310
Query: 337 KAVKDTE---KYEIDGQVLEVVLAKPQ 360
K V+D E K +D LEV +AKPQ
Sbjct: 311 KLVQDAEKGTKPSLDSNTLEVKMAKPQ 337
>gi|328876236|gb|EGG24599.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 497
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/263 (39%), Positives = 171/263 (65%), Gaps = 8/263 (3%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+EVF+GG+ ++ +EE+L+DL IG+V +VR+MKD+ +GE+KG+ FVSF +K K+A+
Sbjct: 112 NEVFVGGIARNTTEEELQDLFSTIGNVKQVRIMKDRSNGENKGYGFVSFANKSNCKEAVV 171
Query: 167 ELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
+ ++KE KGK +R SE K ++FIGN+PK +D+ ++ D G+ ++ + DP N
Sbjct: 172 QFNNKEFKGKNLRVKFSENKRKIFIGNLPKELKKDQLLLILADHSDGITNVDFLTDPDNS 231
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
SRNRGF+F+ Y + A+ +R++ NFK+ T++WADP PD + +QV+ LY
Sbjct: 232 SRNRGFAFIEYTDYYQAEKARKEFSQPNFKIGNCNVTVNWADPIQEPDET-IMNQVRVLY 290
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMP---PGKSGKRDFGFIHYAERSSALKAVKDTE 343
++N+PD+ S E++++LF+ +G + KV++P PG+ +RDFGF+H+A R A +
Sbjct: 291 IRNLPDSKSEEQVRKLFEEYGVIEKVIIPNNLPGQQ-RRDFGFVHFANRDEAEATLARHH 349
Query: 344 KYEI--DGQVLEVVLAKPQTDKK 364
I G+ L + AKP DKK
Sbjct: 350 DTPITYQGRPLSLSFAKP-IDKK 371
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLMKDKE-SGESKGFAFVSFRSKEFAK 162
N ++FIG LPK+ ++ L + D + V + D + S ++GFAF+ + A+
Sbjct: 190 NKRKIFIGNLPKELKKDQLLLILADHSDGITNVDFLTDPDNSSRNRGFAFIEYTDYYQAE 249
Query: 163 KAIDELHSKELKGKTIRCSLS----------ETKNR---LFIGNVPKNWTEDEFRKVIED 209
KA E K +++ N+ L+I N+P + +E++ RK+ E+
Sbjct: 250 KARKEFSQPNFKIGNCNVTVNWADPIQEPDETIMNQVRVLYIRNLPDSKSEEQVRKLFEE 309
Query: 210 VGPGVETIELIKDPQNP--SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267
G IE + P N + R F FV + N A+ + + + G ++S+A
Sbjct: 310 YG----VIEKVIIPNNLPGQQRRDFGFVHFANRDEAEATLARHHDTPITYQGRPLSLSFA 365
Query: 268 DP 269
P
Sbjct: 366 KP 367
>gi|281200597|gb|EFA74815.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 425
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 176/267 (65%), Gaps = 8/267 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P +EVF+GG+ K+ +E+DL+ + +G V ++RLMK+K +GESKG+AF++F K +
Sbjct: 43 PMAENEVFVGGVSKNVTEDDLQSVFNSVGSVRQIRLMKNKLNGESKGYAFITFEDKSSCQ 102
Query: 163 KAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
A++++ +KELKGK++R SE + +LF+GN+PK + +++ +++ G+ +++ + D
Sbjct: 103 MAVEKISNKELKGKSLRVKYSENRRKLFLGNLPKEFNKEQLLEILNKHTEGITSMDFLMD 162
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
P NP+RNRGF+FV + + AD +R++ + +F++ + T++WADP PD + V
Sbjct: 163 PDNPTRNRGFAFVEFSDYYLADKARKEFASPSFRIGSSCVTVNWADPVQEPDEDVMKN-V 221
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP---PGKSGKRDFGFIHYAERSSALKAV 339
+ LYV+N+P+ ++E +K++F+ G + KV++P PG+ +RDFGF+H+ R +A +A+
Sbjct: 222 RVLYVRNLPEQRNSEDLKKVFEEFGTIEKVIIPVNIPGQQ-RRDFGFVHFESREAAEEAL 280
Query: 340 --KDTEKYEIDGQVLEVVLAKPQTDKK 364
+ + G+ L V AKP DKK
Sbjct: 281 VRHNNQPITYQGRDLIVSFAKP-MDKK 306
>gi|440796160|gb|ELR17269.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 1122
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/273 (40%), Positives = 167/273 (61%), Gaps = 7/273 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEVF+GGL KD +E DL +G++FE+RLMKD +GESKG+AFV F S +FAK
Sbjct: 397 PPRGSEVFVGGLGKDVNEADLYSAFANVGEIFEIRLMKDATTGESKGYAFVRFTSPKFAK 456
Query: 163 KAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIK 221
A+ ++ LKG+ + S LF+G++ K+W +D+ + + D GV TI L+K
Sbjct: 457 LAVQQVDGAVLKGRKVGVVHSNDNQTLFLGHLDKDWRQDDLDQHLRDAKIKGVTTITLMK 516
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
D N +RNRGF+FV + ++ A + K++ F+L + WA+P + P S+
Sbjct: 517 DTTNMARNRGFAFVEFSSHEEAAKAHAKIMKPGFRLADVDVKVDWAEPLNEPSEE-VMSK 575
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG-KSGKR-DFGFIHYAERSSALKAV 339
VK++YV N+P + + + I+ LF GE+ ++V+ KS +R DF F++Y ERS+AL A+
Sbjct: 576 VKSIYVCNLPVDVNDDLIRSLFAEFGEIERIVLSKNLKSARRDDFAFVNYTERSAALAAI 635
Query: 340 KDTEKYEI-DGQVLEVVLAKPQT--DKKTEGTF 369
Y++ D VL+V LAKP T DK+ + F
Sbjct: 636 DARHGYKVDDDHVLDVTLAKPVTEQDKQRDKAF 668
>gi|440796577|gb|ELR17686.1| RNA recognition motif (RRM)containing protein [Acanthamoeba
castellanii str. Neff]
Length = 868
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 99/272 (36%), Positives = 165/272 (60%), Gaps = 13/272 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE---------VRLMKDKESGESKGFAFV 153
PP GSEVF+GGL +DA+E+D+R++ IGD++E +RLM+D ++G SKG+AFV
Sbjct: 253 PPKGSEVFVGGLHRDATEDDVREVFAKIGDIYEASTIFPPARLRLMRDPKTGASKGYAFV 312
Query: 154 SFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-P 212
+ FA+ A D+L + G+ + +S+ LF+G++ ++W+ ++ +++ G
Sbjct: 313 RYMEPTFAELAADQLSGYLIMGRPVGVLVSQDNQSLFVGHISQDWSLEQLEAHLKEAGIR 372
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
GV+ I DP NP+RNRGF F+ + ++ A + KM A+F+L G + WA+P +
Sbjct: 373 GVDHIIFQHDPMNPTRNRGFVFIEFKSHHEAARAHGKMTRADFRLSGQKVRVDWAEPLNE 432
Query: 273 PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG--KSGKRDFGFIHYA 330
P SQVK++YV N+P E I LF +G++ ++V+ + ++DF F++Y
Sbjct: 433 PGED-VMSQVKSIYVANLPLEVDNELITTLFGEYGKIERIVLSKNLPTARRKDFAFVNYE 491
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362
ER++ALKA+ +E+ G+ L+V LAKP D
Sbjct: 492 ERANALKAIDGKHGFEVQGRTLQVTLAKPVDD 523
>gi|226506072|ref|NP_001146195.1| uncharacterized protein LOC100279765 [Zea mays]
gi|219886139|gb|ACL53444.1| unknown [Zea mays]
Length = 287
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 112/235 (47%), Positives = 151/235 (64%), Gaps = 23/235 (9%)
Query: 228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYV 287
RN+G+ F+ YYN ACA+Y++QKM FKLD N PT+SWAD K+ + + SQVK+LYV
Sbjct: 8 RNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADHKNA-SEATSTSQVKSLYV 66
Query: 288 KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSALKAVKDTEKYE 346
KN+P + E++K+LF+ GE+TKVV+PP KSG + +GF+H+ ERS +KA+K+TE+YE
Sbjct: 67 KNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENRYGFVHFKERSMVMKALKNTERYE 126
Query: 347 IDGQVLEVVLAKPQTDKKTE-GTFPYSPG--LVPTHLPHAGYG----------GFAGTPY 393
+DGQ+L+ AKP DKK + G+ P + G L P++ P GYG G AG Y
Sbjct: 127 LDGQLLDCSPAKPPADKKDDTGSSPTAKGRPLPPSYAP-LGYGLAGAYNPLGKGLAGA-Y 184
Query: 394 GSVGTGFGVAAGF-----QQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQ 443
S G G A G QPM+Y G P G M+PMVLPDG++ YV Q G Q
Sbjct: 185 NSPGNGLAGAYGVLSAHAAQPMLYAPGASP-GSTMIPMVLPDGRLVYVPQTAGQQ 238
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 50 EEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEV 109
E Y+ + A +++ S + D + P V + AS E +Q+ +L
Sbjct: 16 EYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADHKNAS----EATSTSQVKSL------- 64
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
++ LPK ++E L+ L E +G++ +V ++ +SG + FV F+ + KA+
Sbjct: 65 YVKNLPKTVTQEQLKKLFEHVGEITKV-VIPPAKSGHENRYGFVHFKERSMVMKALKNTE 123
Query: 170 SKELKGKTIRCS 181
EL G+ + CS
Sbjct: 124 RYELDGQLLDCS 135
>gi|347965861|ref|XP_003435825.1| AGAP001419-PC [Anopheles gambiae str. PEST]
gi|333470322|gb|EGK97589.1| AGAP001419-PC [Anopheles gambiae str. PEST]
Length = 532
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/263 (37%), Positives = 159/263 (60%), Gaps = 8/263 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F S++ A
Sbjct: 164 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAS 223
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ EL+ E++ GK I ++S +RLF+GN+PKN DE + PG+ + +
Sbjct: 224 NAVRELNDYEIRNGKKIGVTISFNNHRLFVGNIPKNRDRDELLEEFAKHAPGLVEVIIYS 283
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ + WADP+ PD S+
Sbjct: 284 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWNCDIIVDWADPQEEPDEQ-TMSK 342
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ +TS EK+KE F++ G V +V +D+ F+H+ +R +A+KA+KD
Sbjct: 343 VKVLYVRNLTQDTSEEKLKESFEQFGRVERV------KKIKDYAFVHFEDRDNAVKAMKD 396
Query: 342 TEKYEIDGQVLEVVLAKPQTDKK 364
+ E+ G +EV LAKP +DKK
Sbjct: 397 LDGKEVGGSNIEVSLAKPPSDKK 419
>gi|302848854|ref|XP_002955958.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
gi|300258684|gb|EFJ42918.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
Length = 827
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 208/376 (55%), Gaps = 43/376 (11%)
Query: 14 EEDNYMEE--MDDDVEEQVEEDPEEE----GGDGNFEENDDDEEYDHSKAGASEKDQSAE 67
E++ Y+EE + DD + + P E GG G + D E SE D+
Sbjct: 4 EQEQYVEEAALVDDADMGEPQIPANEIENGGGSGGVDPPADGEP-------KSEGDEPKP 56
Query: 68 ANRNDDDTPHVEEEEKPTASVGEDEKDKHAQL------------LALPPNGSEVFIGGLP 115
+ DD V E+E TA EDE+ ++ + ++LPP+G+EVFI +P
Sbjct: 57 QEQAPDD---VREQELATA---EDERQRNQEHEEQQGAGDSEDPMSLPPHGTEVFISKVP 110
Query: 116 KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK- 174
++A++ +R CE G+VF +R+ KD+ES +KG+ F F+++E A+KA+ L +E+K
Sbjct: 111 REATDAQVRAFCEMAGEVFALRIPKDRESNTNKGYCFCVFKARESAEKAMTILEGREVKE 170
Query: 175 --GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGF 232
G+ + S KN+L+IG +P++ T +E +++ G+E IEL+ D + ++ RGF
Sbjct: 171 FPGRRVNVVPSIVKNKLYIGQMPRDITREELEVLLKAEVVGLEKIELMMDKET-NQARGF 229
Query: 233 SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPD 292
F+ +YN+A A + +K+ F+L G+ + WADPK +VK++YV N+P+
Sbjct: 230 GFIAFYNSAAATLALRKLSRPEFRLRGHQVQVMWADPKR---DEIGTEKVKSIYVGNLPE 286
Query: 293 NTSTEKIKELFQRHGEVTKVV---MPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEI 347
+ ++ +F ++G V +V MP + R++ FI+Y +RSSAL+AV + E K+ +
Sbjct: 287 QYTENDLRAIFSQYGTVERVTLLYMPDDPTKLRNYTFINYTDRSSALRAVSEAENKKHIM 346
Query: 348 DGQVLEVVLAKPQTDK 363
+ L V +AKPQ +
Sbjct: 347 TDKELIVHMAKPQAQR 362
>gi|380011709|ref|XP_003689940.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q-like [Apis florea]
Length = 667
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 159/263 (60%), Gaps = 8/263 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D +G ++G+AF++F ++E A+
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL+ E+ KGK I ++S +RLF+GN+PKN D+ + PG+ + +
Sbjct: 219 QAVRELNDYEIRKGKKIGVTVSYNNHRLFVGNIPKNRDRDDLFEEFTKHAPGLTEVIIYS 278
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ-TMSK 337
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
V+ LYVKN+ + S EK+KE F+++G + +V +D+ F+H+ ER +A+KA+ +
Sbjct: 338 VRVLYVKNLTQDCSEEKLKESFEQYGNIERV------KKIKDYAFVHFEERDNAVKAMNE 391
Query: 342 TEKYEIDGQVLEVVLAKPQTDKK 364
EI G +EV LAKP +DKK
Sbjct: 392 LNGKEIGGSHIEVSLAKPPSDKK 414
>gi|47212367|emb|CAF89932.1| unnamed protein product [Tetraodon nigroviridis]
Length = 636
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 167/267 (62%), Gaps = 8/267 (2%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A PP G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F SKE
Sbjct: 156 AQPPVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEA 215
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A++A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 216 AQEAVKLCNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVIL 275
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
PQ+ S+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A
Sbjct: 276 YLQPQDKSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNMVTVEWADPMEDPDPEVMA 335
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+VK L+V+N+ ++ + E +++ F +G + +V +D+ FIH+ ER A+KA+
Sbjct: 336 -KVKVLFVRNLANSVTEEILEKAFSEYGNLERV------KKLKDYAFIHFEERDGAVKAL 388
Query: 340 KDTEKYEIDGQVLEVVLAKPQTDKKTE 366
++ E++G+ +E+V AKP K+ E
Sbjct: 389 EELNGKELEGEPIEIVFAKPPDQKRKE 415
>gi|410915935|ref|XP_003971442.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Takifugu rubripes]
Length = 637
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 166/265 (62%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F SKE A+
Sbjct: 162 PPVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQ 221
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 222 EAVKLCNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYL 281
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
PQ+ S+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 282 QPQDKSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNMVTVEWADPMEDPDPEVMA-K 340
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ ++ + E +++ F +G + +V +D+ FIH+ ER A+KA+++
Sbjct: 341 VKVLFVRNLANSVTEEILEKSFSEYGNLERV------KKLKDYAFIHFEERDGAVKALEE 394
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
E++G+ +E+V AKP K+ E
Sbjct: 395 MNGKELEGEPIEIVFAKPPDQKRKE 419
>gi|242011880|ref|XP_002426671.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
gi|212510842|gb|EEB13933.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
Length = 548
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 180/322 (55%), Gaps = 30/322 (9%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P +G EVF G +PKD E++L L E G ++++RLM D +G+++G+AFV+F SKE A+
Sbjct: 173 PGSGCEVFCGKIPKDMYEDELIPLFEKCGSIWDLRLMMDPMTGQNRGYAFVTFTSKEAAQ 232
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ EL + E+K GK ++ ++S RLF+GN+PK+ ++E + + G+ + +
Sbjct: 233 NAVRELDNHEMKPGKPLKVNISVPNLRLFVGNIPKSKGKEEIMEEFSKLAAGLTKVIIYS 292
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD + S+
Sbjct: 293 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRVKVWGCDIIVDWADPQEEPD-AETMSK 351
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ + S EK+KE F+ +G++ +V +D+ FIH+ +R +A+KA+ +
Sbjct: 352 VKVLYVRNLTQDCSEEKLKESFEVYGKIDRV------KKIKDYAFIHFEDRDNAIKALNE 405
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE-------------------GTFPYSPGLVPTHLPH 382
++ G +EV LAKP +DKK + G+ P P ++ + P
Sbjct: 406 LNGKDLAGACIEVSLAKPPSDKKKKEEVLRARERRMMQMMQGRGGSSPSHPAMMGS--PM 463
Query: 383 AGYGGFAGTPYGSVGTGFGVAA 404
A G P GS G G AA
Sbjct: 464 ASLRGPGAGPRGSAG-GLRCAA 484
>gi|383847619|ref|XP_003699450.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Megachile rotundata]
Length = 664
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 161/263 (61%), Gaps = 8/263 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D +G ++G+AF++F ++E A+
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL + E+K GK ++ ++S RLF+GN+PK+ ++E + + G+ + +
Sbjct: 219 QAVKELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 278
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ-TMSK 337
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
V+ LYVKN+ + S EK+KE+F+++G + +V +D+ F+H+ ER +A+KA+ +
Sbjct: 338 VRVLYVKNLTQDCSEEKLKEVFEQYGNIERV------KKIKDYAFVHFEERDNAVKAMNE 391
Query: 342 TEKYEIDGQVLEVVLAKPQTDKK 364
EI G +EV LAKP +DKK
Sbjct: 392 LNGKEIGGSHIEVSLAKPPSDKK 414
>gi|442620153|ref|NP_001262779.1| syncrip, isoform M [Drosophila melanogaster]
gi|440217681|gb|AGB96159.1| syncrip, isoform M [Drosophila melanogaster]
Length = 699
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/264 (36%), Positives = 159/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L+ E++ GK I ++S +RLF+GN+PKN DE + PG+ + +
Sbjct: 253 VNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 312
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 371
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 372 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 425
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 426 GLNGKEIGASNIEVSLAKPPSDKK 449
>gi|442620147|ref|NP_001262777.1| syncrip, isoform J [Drosophila melanogaster]
gi|440217678|gb|AGB96157.1| syncrip, isoform J [Drosophila melanogaster]
Length = 761
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/264 (36%), Positives = 159/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L+ E++ GK I ++S +RLF+GN+PKN DE + PG+ + +
Sbjct: 261 VNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 320
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 379
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 380 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 433
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 434 GLNGKEIGASNIEVSLAKPPSDKK 457
>gi|348531623|ref|XP_003453308.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Oreochromis niloticus]
Length = 535
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 164/267 (61%), Gaps = 8/267 (2%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F +KE
Sbjct: 155 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 214
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A++A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 215 AQQAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFAKVTEGLNDVIL 274
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A
Sbjct: 275 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVMA 334
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+VK L+V+N+ + E +++ F +HG++ +V +D+ FIH+ ER SA+KA+
Sbjct: 335 -KVKVLFVRNLASTVTEEILEKTFSQHGKLERV------KKLKDYAFIHFEERESAVKAL 387
Query: 340 KDTEKYEIDGQVLEVVLAKPQTDKKTE 366
D +++G+ +E+V AKP K+ E
Sbjct: 388 TDLNGKDLEGEHIEIVFAKPPDQKRKE 414
>gi|350409228|ref|XP_003488661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Bombus
impatiens]
Length = 664
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 160/263 (60%), Gaps = 8/263 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D +G ++G+AF++F ++E A+
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL + E+K GK ++ ++S RLF+GN+PK+ ++E + + G+ + +
Sbjct: 219 QAVRELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 278
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ-TMSK 337
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
V+ LYVKN+ + S EK+KE F+++G + +V +D+ F+H+ ER +A+KA+ +
Sbjct: 338 VRVLYVKNLTQDCSEEKLKESFEQYGNIERV------KKIKDYAFVHFEERDNAVKAMNE 391
Query: 342 TEKYEIDGQVLEVVLAKPQTDKK 364
EI G +EV LAKP +DKK
Sbjct: 392 LNGKEIGGSHIEVSLAKPPSDKK 414
>gi|328789990|ref|XP_392307.4| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Apis
mellifera]
Length = 664
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 160/263 (60%), Gaps = 8/263 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D +G ++G+AF++F ++E A+
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL + E+K GK ++ ++S RLF+GN+PK+ ++E + + G+ + +
Sbjct: 219 QAVRELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 278
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ-TMSK 337
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
V+ LYVKN+ + S EK+KE F+++G + +V +D+ F+H+ ER +A+KA+ +
Sbjct: 338 VRVLYVKNLTQDCSEEKLKESFEQYGNIERV------KKIKDYAFVHFEERDNAVKAMNE 391
Query: 342 TEKYEIDGQVLEVVLAKPQTDKK 364
EI G +EV LAKP +DKK
Sbjct: 392 LNGKEIGGSHIEVSLAKPPSDKK 414
>gi|161078446|ref|NP_732558.2| syncrip, isoform C [Drosophila melanogaster]
gi|16197897|gb|AAL13706.1| GH28335p [Drosophila melanogaster]
gi|158030317|gb|AAN13833.2| syncrip, isoform C [Drosophila melanogaster]
gi|220945692|gb|ACL85389.1| CG17838-PC [synthetic construct]
gi|220955464|gb|ACL90275.1| CG17838-PC [synthetic construct]
Length = 529
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/264 (36%), Positives = 159/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L+ E++ GK I ++S +RLF+GN+PKN DE + PG+ + +
Sbjct: 219 VNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 278
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 337
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 338 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 391
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 392 GLNGKEIGASNIEVSLAKPPSDKK 415
>gi|307173250|gb|EFN64303.1| Heterogeneous nuclear ribonucleoprotein Q [Camponotus floridanus]
Length = 683
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 162/263 (61%), Gaps = 8/263 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D SG ++G+AF++F ++E A+
Sbjct: 156 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQ 215
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL + E+K GK+++ ++S RLF+GN+PK+ ++E + + G+ + +
Sbjct: 216 QAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 275
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+
Sbjct: 276 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ-TMSK 334
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
V+ LYV+N+ + S EK+KE F+++G++ +V +D+ FIH+ +R +A+KA+ +
Sbjct: 335 VRVLYVRNLTQDCSEEKLKESFEQYGKIERV------KKIKDYAFIHFEDRDNAVKAMNE 388
Query: 342 TEKYEIDGQVLEVVLAKPQTDKK 364
E+ G +EV LAKP +DKK
Sbjct: 389 LNGKEMGGSHIEVSLAKPPSDKK 411
>gi|241236734|ref|XP_002400928.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215496107|gb|EEC05748.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 438
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 159/263 (60%), Gaps = 8/263 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P +G EVF+G +PKD E++L L E G ++++RLM D SG ++G+AF++F +++ A
Sbjct: 163 PASGCEVFVGKIPKDMFEDELIPLFEKCGRIWDLRLMMDPLSGLNRGYAFITFCNRDGAH 222
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
++ EL + E+ KGK I ++S +RLF+GN+PKN ++E + PG+ + +
Sbjct: 223 NSVRELDNYEIRKGKYIGVTISINNHRLFVGNIPKNRGKEELYEEFSKHAPGLTEVIIYS 282
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ + WADP+ PD A +
Sbjct: 283 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWSCDIIVDWADPQEEPDQETMA-K 341
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ + + E++KELF++HG V +V +D+ F+H+ ER A+KA+
Sbjct: 342 VKVLYVRNLTADVTEERLKELFEQHGRVERV------KKIKDYAFVHFEERDHAVKAMNQ 395
Query: 342 TEKYEIDGQVLEVVLAKPQTDKK 364
+ ++ G +EV LAKP +DKK
Sbjct: 396 LQGKDLCGAPMEVSLAKPPSDKK 418
>gi|307212325|gb|EFN88129.1| Heterogeneous nuclear ribonucleoprotein Q [Harpegnathos saltator]
Length = 649
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 161/263 (61%), Gaps = 8/263 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D SG ++G+AF++F ++E A+
Sbjct: 150 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQ 209
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL + E+K GK+++ ++S RLF+GN+PK+ ++E + G+ + +
Sbjct: 210 QAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLTEVIIYS 269
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+
Sbjct: 270 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ-TMSK 328
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
V+ LYV+N+ + S EK+KE F+++G++ +V +D+ FIH+ +R +A++A+ +
Sbjct: 329 VRVLYVRNLTQDCSEEKLKESFEQYGKIERV------KKIKDYAFIHFEDRDNAVRAMNE 382
Query: 342 TEKYEIDGQVLEVVLAKPQTDKK 364
E+ G +EV LAKP +DKK
Sbjct: 383 LNGKEMGGSHIEVSLAKPPSDKK 405
>gi|195055139|ref|XP_001994478.1| GH17270 [Drosophila grimshawi]
gi|193892241|gb|EDV91107.1| GH17270 [Drosophila grimshawi]
Length = 532
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 159/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 162 VPGNGCEVFCGKIPKDMFEDELIPLFENCGVIWDLRLMMDPMTGTNRGYAFVTFTNREAA 221
Query: 162 KKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L+ E+ KGK I ++S +RLF+GN+PKN DE + PG+ + +
Sbjct: 222 INAVRQLNDFEIRKGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 281
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 282 SSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 340
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + + +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 341 KVKVLYVRNLTQDVTEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 394
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
E+ +EV LAKP +DKK
Sbjct: 395 GLNGKEVGASNIEVSLAKPPSDKK 418
>gi|118794756|ref|XP_321714.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|347965857|ref|XP_003435823.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|347965859|ref|XP_003435824.1| AGAP001419-PD [Anopheles gambiae str. PEST]
gi|116116446|gb|EAA43192.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|333470321|gb|EGK97588.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|333470323|gb|EGK97590.1| AGAP001419-PD [Anopheles gambiae str. PEST]
Length = 532
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 159/263 (60%), Gaps = 8/263 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F S++ A
Sbjct: 164 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAS 223
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ EL++ E+K G ++ ++S RLF+GN+PK+ ++E + G+ + +
Sbjct: 224 NAVRELNNYEIKPGNCLKINVSVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLVEVIIYS 283
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ + WADP+ PD S+
Sbjct: 284 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWNCDIIVDWADPQEEPDEQ-TMSK 342
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ +TS EK+KE F++ G V +V +D+ F+H+ +R +A+KA+KD
Sbjct: 343 VKVLYVRNLTQDTSEEKLKESFEQFGRVERV------KKIKDYAFVHFEDRDNAVKAMKD 396
Query: 342 TEKYEIDGQVLEVVLAKPQTDKK 364
+ E+ G +EV LAKP +DKK
Sbjct: 397 LDGKEVGGSNIEVSLAKPPSDKK 419
>gi|427784529|gb|JAA57716.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Rhipicephalus pulchellus]
Length = 608
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 158/261 (60%), Gaps = 8/261 (3%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+G EVF+G +PKD E++L L E G ++++RLM D SG ++G+AF++F ++E A +
Sbjct: 158 SGCEVFVGKIPKDMFEDELIPLFEKCGKIWDLRLMMDPLSGLNRGYAFITFCNREGAHNS 217
Query: 165 IDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+ EL + E+ KGK I ++S +RLF+GN+PKN ++E + PG+ + + P
Sbjct: 218 VRELDNHEIRKGKYIGVTISINNHRLFVGNIPKNRGKEELFEEFSKHAPGLTEVIIYSSP 277
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
+ +NRGF F+ Y ++ A +++++ K+ + WADP+ PD A +VK
Sbjct: 278 DDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWSCDIIVDWADPQEEPDEETMA-KVK 336
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
LYV+N+ + + EK+KELF+ HG V +V +D+ F+H+ ER A++A++ +
Sbjct: 337 VLYVRNLTTDVTEEKLKELFEAHGRVERV------KKIKDYAFVHFEERDHAVRAMEQLQ 390
Query: 344 KYEIDGQVLEVVLAKPQTDKK 364
++ G +EV LAKP +DKK
Sbjct: 391 GKDLCGAPMEVSLAKPPSDKK 411
>gi|345481380|ref|XP_001602182.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Nasonia vitripennis]
Length = 661
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 161/263 (61%), Gaps = 8/263 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D +G ++G+AF++F +++ A+
Sbjct: 160 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFITFTNRDAAQ 219
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL + E+K GK+++ ++S RLF+GN+PK+ ++E + G+ + +
Sbjct: 220 QAVRELDNYEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLTEVIIYS 279
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+
Sbjct: 280 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRMKVWGCDIIVDWADPQEEPDEQ-TMSK 338
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
V+ LYV+N+ + S EK+KE F+++G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 339 VRVLYVRNLTQDCSEEKLKECFEQYGKIERV------KKIKDYAFIHFEERECAVKAMRE 392
Query: 342 TEKYEIDGQVLEVVLAKPQTDKK 364
E+ G +EV LAKP +DKK
Sbjct: 393 LNGKEMGGSHIEVSLAKPPSDKK 415
>gi|194744098|ref|XP_001954532.1| GF16693 [Drosophila ananassae]
gi|190627569|gb|EDV43093.1| GF16693 [Drosophila ananassae]
Length = 710
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 162 VPGNGCEVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAA 221
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 222 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 282 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 340
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 341 KVKVLYVRNLTQDVSEDKLKEHFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 394
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 395 GLNGKEIGASNIEVSLAKPPSDKK 418
>gi|270001371|gb|EEZ97818.1| hypothetical protein TcasGA2_TC000185 [Tribolium castaneum]
Length = 638
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 162/263 (61%), Gaps = 8/263 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F +++ A+
Sbjct: 173 PGAGCEVFCGKIPKDMYEDELIPLFEGCGTIWDLRLMMDPMTGTNRGYAFVTFTTRDAAQ 232
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ +L + E+K GKT++ ++S RLF+GN+PK+ ++E + + G+ + +
Sbjct: 233 QAVQKLDNHEIKPGKTLKINISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLVEVIIYS 292
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+
Sbjct: 293 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMSK 351
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ S EK+KE F+ +G+V +V +D+ FIH+ +R +A+KA+++
Sbjct: 352 VKVLYVRNLTQEISEEKLKEAFEAYGKVERV------KKIKDYAFIHFEDRENAVKAMEE 405
Query: 342 TEKYEIDGQVLEVVLAKPQTDKK 364
+ E+ G +EV LAKP +DKK
Sbjct: 406 LDGKEMGGSNIEVSLAKPPSDKK 428
>gi|157132620|ref|XP_001656100.1| heterogeneous nuclear ribonucleoprotein r [Aedes aegypti]
gi|108881674|gb|EAT45899.1| AAEL002879-PA, partial [Aedes aegypti]
Length = 517
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 159/263 (60%), Gaps = 8/263 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F S++ A
Sbjct: 126 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAS 185
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ EL + E+K GK ++ ++S RLF+GN+PK+ ++E + G+ + +
Sbjct: 186 NAVRELDNYEIKSGKCLKINVSVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLMEVIIYS 245
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+
Sbjct: 246 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMSK 304
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ +TS EK+KE F++ G+V +V +D+ FIH+ +R A+ A+K+
Sbjct: 305 VKVLYVRNLTQDTSEEKLKESFEQFGKVERV------KKIKDYAFIHFEDRDHAVNAMKE 358
Query: 342 TEKYEIDGQVLEVVLAKPQTDKK 364
+ ++ G LEV LAKP +DKK
Sbjct: 359 LDGKDLGGSNLEVSLAKPPSDKK 381
>gi|449676978|ref|XP_002157894.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Hydra
magnipapillata]
Length = 623
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 163/264 (61%), Gaps = 17/264 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S++FIG LP+D E++L + EP G ++++R+M D SG +KGFAF ++ +KE A A+
Sbjct: 164 SQIFIGKLPRDMYEDELVPMFEPHGTIYDLRIMVDPFSGLNKGFAFCTYTTKEAATLAVK 223
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTE----DEFRKVIEDVGPGVETIELIK 221
E+ K+++ GKT+ LS+ NRLF+G++PK+ T+ DEF +E++ + I
Sbjct: 224 EMDGKQVRDGKTLGVCLSQANNRLFVGSIPKSKTKQQIFDEFASKVENLSDVIVYIS--- 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN-TPTISWADPKSTPDHSAAAS 280
++ S+NRGF+F+ + + A +R++ + K+ GN TPT+ WADP PD + S
Sbjct: 281 -SEDKSKNRGFAFLEFTTHKDASLARRRFMTGRIKVFGNITPTVDWADPVEEPDDN-VMS 338
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK +YV+N+ K+ ELF+++G V KV +D+ FIH+ R A++A++
Sbjct: 339 KVKVVYVRNLSPAIEETKLNELFKQYGAVEKV------KKLKDYAFIHFVNRDDAVRAIE 392
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
+ ++D +EV LAKPQT+KK
Sbjct: 393 ELNGQDLDDLKIEVSLAKPQTEKK 416
>gi|161078444|ref|NP_650913.2| syncrip, isoform B [Drosophila melanogaster]
gi|442620151|ref|NP_001097848.2| syncrip, isoform L [Drosophila melanogaster]
gi|158030316|gb|AAN13835.2| syncrip, isoform B [Drosophila melanogaster]
gi|440217680|gb|ABW08710.2| syncrip, isoform L [Drosophila melanogaster]
Length = 711
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 337
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 338 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 391
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 392 GLNGKEIGASNIEVSLAKPPSDKK 415
>gi|195498304|ref|XP_002096465.1| GE25686 [Drosophila yakuba]
gi|194182566|gb|EDW96177.1| GE25686 [Drosophila yakuba]
Length = 747
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 197 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 256
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 257 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 316
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 317 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 375
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 376 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 429
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 430 GLNGKEIGASNIEVSLAKPPSDKK 453
>gi|195353891|ref|XP_002043435.1| GM23135 [Drosophila sechellia]
gi|194127576|gb|EDW49619.1| GM23135 [Drosophila sechellia]
Length = 745
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 379
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 380 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 433
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 434 GLNGKEIGASNIEVSLAKPPSDKK 457
>gi|198450702|ref|XP_002137140.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|198131152|gb|EDY67698.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 674
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F +++ A
Sbjct: 162 VPGNGCEVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAA 221
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 222 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 282 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 340
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + + EK+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 341 KVKVLYVRNLTQDVTEEKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 394
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 395 GLNGKEIGASNIEVSLAKPPSDKK 418
>gi|442620149|ref|NP_001262778.1| syncrip, isoform K [Drosophila melanogaster]
gi|440217679|gb|AGB96158.1| syncrip, isoform K [Drosophila melanogaster]
Length = 753
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 253 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 312
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 371
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 372 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 425
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 426 GLNGKEIGASNIEVSLAKPPSDKK 449
>gi|24648522|ref|NP_732556.1| syncrip, isoform D [Drosophila melanogaster]
gi|23171809|gb|AAF55805.2| syncrip, isoform D [Drosophila melanogaster]
Length = 707
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 379
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 380 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 433
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 434 GLNGKEIGASNIEVSLAKPPSDKK 457
>gi|442620155|ref|NP_001262780.1| syncrip, isoform N [Drosophila melanogaster]
gi|442620159|ref|NP_001262782.1| syncrip, isoform P [Drosophila melanogaster]
gi|440217682|gb|AGB96160.1| syncrip, isoform N [Drosophila melanogaster]
gi|440217684|gb|AGB96162.1| syncrip, isoform P [Drosophila melanogaster]
Length = 665
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 337
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 338 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 391
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 392 GLNGKEIGASNIEVSLAKPPSDKK 415
>gi|193683845|ref|XP_001950620.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Acyrthosiphon pisum]
Length = 533
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 191/382 (50%), Gaps = 26/382 (6%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G LP E++L L E G ++++RLM D SG ++G+AFV++ +KE A+
Sbjct: 155 PTAGCEVFCGKLPNTVFEDELIPLFEKCGKIYDLRLMMDPLSGTNRGYAFVTYTTKEEAE 214
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A EL E+K GK I+ ++S RLFIGN+PK+ +++ + + G+ + +
Sbjct: 215 RATVELDGYEIKPGKNIKVNISVPNLRLFIGNIPKSKGKEDIMEEFGKITSGLTEVIIYS 274
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ N+K+ G + WADP+ PD S+
Sbjct: 275 SPDDRRKNRGFCFLEYDSHKAASVAKRRLSAPNYKVWGCDIIVDWADPQEEPDDETM-SK 333
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ + ++KE F+ HG V +V +D+ FIH+ +R ALKA+++
Sbjct: 334 VKVLYVRNLTQEVTENRLKETFEVHGSVERV------KKIKDYAFIHFNDRGCALKALEE 387
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKT-EGTFPYSPGLVPTHLPHAGYG------GFAGTP-- 392
+DG LEV LAKP +DKK E + T++ +G G P
Sbjct: 388 LNGSNLDGATLEVSLAKPPSDKKKKEEILRARERRMFTNMQGRAFGLMPQPLSLMGAPRP 447
Query: 393 -YGSVGTGFGVAAG--FQQPMIYGRGPMPSGMHMVPMVLPDGQIGY-VLQQPGVQMPPPR 448
Y +V +A F P + P+G P G Q GV
Sbjct: 448 GYRAVSNNLRMAGRGEFDWPWGFNSWMWPAGRWDAGAAGPWGTASTGNRQWHGVA----- 502
Query: 449 PRRVDRSNGPGGRGGRGGSSGG 470
P NG GGR G G+S G
Sbjct: 503 PNNRSWGNGSGGRIGAAGNSSG 524
>gi|442620161|ref|NP_001262783.1| syncrip, isoform Q [Drosophila melanogaster]
gi|440217685|gb|AGB96163.1| syncrip, isoform Q [Drosophila melanogaster]
Length = 761
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 379
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 380 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 433
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 434 GLNGKEIGASNIEVSLAKPPSDKK 457
>gi|194899678|ref|XP_001979385.1| GG24121 [Drosophila erecta]
gi|190651088|gb|EDV48343.1| GG24121 [Drosophila erecta]
Length = 666
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 164 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 223
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 224 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 283
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 284 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 342
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 343 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 396
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 397 GLNGKEIGASNIEVSLAKPPSDKK 420
>gi|28317322|gb|AAO39657.1| AT01548p, partial [Drosophila melanogaster]
Length = 626
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 120 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 179
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 180 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 239
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 240 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 298
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 299 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 352
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 353 GLNGKEIGASNIEVSLAKPPSDKK 376
>gi|45551939|ref|NP_732557.2| syncrip, isoform A [Drosophila melanogaster]
gi|45446567|gb|AAN13832.2| syncrip, isoform A [Drosophila melanogaster]
Length = 563
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 253 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 312
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 371
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 372 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 425
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 426 GLNGKEIGASNIEVSLAKPPSDKK 449
>gi|161078453|ref|NP_001097849.1| syncrip, isoform H [Drosophila melanogaster]
gi|158030319|gb|ABW08711.1| syncrip, isoform H [Drosophila melanogaster]
Length = 534
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 164 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 223
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 224 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 283
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 284 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 342
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 343 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 396
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 397 GLNGKEIGASNIEVSLAKPPSDKK 420
>gi|432936836|ref|XP_004082303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Oryzias
latipes]
Length = 542
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 162/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F SKE A+
Sbjct: 158 PTIGTEIFVGKIPRDLFEDELVPLFERAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 QAVKLCNNSEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKVTEGLNDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F + G++ +V +D+ FIH+ ER SA+KA+ D
Sbjct: 337 VKVLFVRNLASAVTEELLEKTFSQFGKLERV------KKLKDYAFIHFEERDSAVKALGD 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 LNGKDLEGEHIEIVFAKPPDQKRKE 415
>gi|24648520|ref|NP_732555.1| syncrip, isoform E [Drosophila melanogaster]
gi|23171808|gb|AAN13831.1| syncrip, isoform E [Drosophila melanogaster]
Length = 571
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 379
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 380 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 433
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 434 GLNGKEIGASNIEVSLAKPPSDKK 457
>gi|195449649|ref|XP_002072163.1| GK22469 [Drosophila willistoni]
gi|194168248|gb|EDW83149.1| GK22469 [Drosophila willistoni]
Length = 731
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F +++ A
Sbjct: 162 VPGNGCEVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAA 221
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 222 INAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 282 SSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 340
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 341 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 394
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 395 GLNGKEIGASNIEVSLAKPPSDKK 418
>gi|24648528|ref|NP_732559.1| syncrip, isoform F [Drosophila melanogaster]
gi|23171812|gb|AAN13834.1| syncrip, isoform F [Drosophila melanogaster]
Length = 529
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 337
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 338 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 391
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 392 GLNGKEIGASNIEVSLAKPPSDKK 415
>gi|442620145|ref|NP_001262776.1| syncrip, isoform I [Drosophila melanogaster]
gi|440217677|gb|AGB96156.1| syncrip, isoform I [Drosophila melanogaster]
Length = 603
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 253 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 312
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 371
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 372 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 425
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 426 GLNGKEIGASNIEVSLAKPPSDKK 449
>gi|442620163|ref|NP_001262784.1| syncrip, isoform R [Drosophila melanogaster]
gi|440217686|gb|AGB96164.1| syncrip, isoform R [Drosophila melanogaster]
Length = 569
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 337
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 338 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 391
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 392 GLNGKEIGASNIEVSLAKPPSDKK 415
>gi|442620157|ref|NP_001262781.1| syncrip, isoform O [Drosophila melanogaster]
gi|440217683|gb|AGB96161.1| syncrip, isoform O [Drosophila melanogaster]
Length = 611
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 379
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 380 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 433
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 434 GLNGKEIGASNIEVSLAKPPSDKK 457
>gi|46362505|gb|AAH66570.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 161/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F +KE A+
Sbjct: 159 PTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQ 218
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KA+ ++ E++ GK I +S NRLF+G++PK+ T+D+ + V G+ + L
Sbjct: 219 KAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILYH 278
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 279 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 337
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F + G++ +V +D+ FIH+ ER A+KA+ +
Sbjct: 338 VKVLFVRNLASTVTEELLEKTFCQFGKLERV------KKLKDYAFIHFEERDGAVKALAE 391
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 392 LHGKDLEGEPIEIVFAKPPDQKRKE 416
>gi|195113079|ref|XP_002001097.1| GI10594 [Drosophila mojavensis]
gi|193917691|gb|EDW16558.1| GI10594 [Drosophila mojavensis]
Length = 721
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 218 VPGNGCEVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAA 277
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 278 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 337
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 338 SSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 396
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + + +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 397 KVKVLYVRNLTQDVTEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 450
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
E+ +EV LAKP +DKK
Sbjct: 451 GLNGKEVGASNIEVSLAKPPSDKK 474
>gi|41054427|ref|NP_955973.1| synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
gi|28422490|gb|AAH46902.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 161/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F +KE A+
Sbjct: 159 PTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQ 218
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KA+ ++ E++ GK I +S NRLF+G++PK+ T+D+ + V G+ + L
Sbjct: 219 KAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILYH 278
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 279 QPDDKKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 337
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F + G++ +V +D+ FIH+ ER A+KA+ +
Sbjct: 338 VKVLFVRNLASTVTEELLEKTFCQFGKLERV------KKLKDYAFIHFEERDGAVKALAE 391
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 392 LHGKDLEGEPIEIVFAKPPDQKRKE 416
>gi|390177341|ref|XP_003736348.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859003|gb|EIM52421.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 483
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F +++ A
Sbjct: 162 VPGNGCEVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAA 221
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 222 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 282 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 340
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + + EK+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 341 KVKVLYVRNLTQDVTEEKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 394
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
EI +EV LAKP +DKK
Sbjct: 395 GLNGKEIGASNIEVSLAKPPSDKK 418
>gi|391324923|ref|XP_003736991.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Metaseiulus
occidentalis]
Length = 558
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 154/263 (58%), Gaps = 7/263 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +PKD E++L L E G ++++RLM D +G ++G+AF++F K+ A+
Sbjct: 169 PAAGCEVFVGKIPKDMFEDELIPLFEKCGKIYDLRLMMDPLTGLNRGYAFITFCEKQGAQ 228
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A++ + E+ KGK I ++S +RLF+GN+PKN DE + PG+ + +
Sbjct: 229 EAVNMFDNHEIRKGKHIGVTISINNHRLFVGNIPKNRGRDELLEEFTKHAPGLTDVIIYT 288
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S S+
Sbjct: 289 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPD-SETMSK 347
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ + EK+KE+F+ G + V RD+ F+H+ +R AL+A++
Sbjct: 348 VKVLYVRNLTQEVTEEKLKEVFEEFGGRVERV-----KKIRDYAFVHFEDREDALRALEK 402
Query: 342 TEKYEIDGQVLEVVLAKPQTDKK 364
E G +EV LAKP +DKK
Sbjct: 403 NNNREAGGAPMEVSLAKPPSDKK 425
>gi|195390987|ref|XP_002054147.1| GJ22950 [Drosophila virilis]
gi|194152233|gb|EDW67667.1| GJ22950 [Drosophila virilis]
Length = 789
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 162 VPGNGCEVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAA 221
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 222 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 282 SSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 340
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + + +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 341 KVKVLYVRNLTQDVTEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 394
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
E+ +EV LAKP +DKK
Sbjct: 395 GLNGKEVGASNIEVSLAKPPSDKK 418
>gi|291396564|ref|XP_002714606.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Oryctolagus cuniculus]
Length = 563
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 162/265 (61%), Gaps = 7/265 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
+K L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 338 MKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 391
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 392 MNGKDLEGENIEIVFAKPPDQKRKE 416
>gi|37681889|gb|AAQ97822.1| NS1-associated protein 1 [Danio rerio]
Length = 558
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 161/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F +KE A+
Sbjct: 159 PTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQ 218
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KA+ ++ E++ GK I +S NRLF+G++PK+ T+D+ + V G+ + L
Sbjct: 219 KAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILYH 278
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 279 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 337
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F + G++ +V +D+ FIH+ ER A+KA+ +
Sbjct: 338 VKVLFVRNLASTVTEELLEKTFCQFGKLERV------KKLKDYAFIHFEERDGAVKALAE 391
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 392 LHGKDLEGEPIEIVFAKPPDQKRKE 416
>gi|410898108|ref|XP_003962540.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Takifugu
rubripes]
Length = 539
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 163/267 (61%), Gaps = 8/267 (2%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F +KE
Sbjct: 156 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 215
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A++A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 216 AQQAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKVTEGLNDVIL 275
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A
Sbjct: 276 YLQPVDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPLEDPDPEVMA 335
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+
Sbjct: 336 -KVKVLFVRNLASSVTEELLEKAFSQFGKLERV------KKLKDYAFIHFEERDGAVKAL 388
Query: 340 KDTEKYEIDGQVLEVVLAKPQTDKKTE 366
D +++G+ +E+V AKP K+ E
Sbjct: 389 ADLNGKDLEGEHIEIVFAKPPDQKRKE 415
>gi|303272115|ref|XP_003055419.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463393|gb|EEH60671.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 291
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 170/294 (57%), Gaps = 34/294 (11%)
Query: 99 LLALPPNGSEVFIGGLPKDASEEDLRDLC----EPIGDVFEVRLMKDKESGESKGFAFVS 154
LL P + E+F+GG+PK ASE D+R C E + V+L+ D +G+++G+AFV+
Sbjct: 3 LLKKPAHSCELFLGGIPKSASEADVRAFCDDGAEGVASPSSVQLVIDTATGQNRGYAFVA 62
Query: 155 FRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-G 213
+ S+E A A ++L+ K ++ K IR S+ +TK+R+FIGNV + T E + + D G G
Sbjct: 63 YPSREDAAAAAEKLNEKAIEDKKIRVSVKQTKHRVFIGNVDRMKTRAEVIQGLRDAGCGG 122
Query: 214 VETIELIK--DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
VE +E+ K +P PS+ +GF F +YN +CA+ + K+L+ + G T WADPK
Sbjct: 123 VEKLEMPKNRNPAYPSQTKGFGFADFYNASCAERA-MKILSESRLFLGRPVTARWADPK- 180
Query: 272 TPDHSAAASQVKALYVKNIP-----DNTSTEKIKELFQRHGEVTKVVM---PPG---KSG 320
PD S + VK++YV N+P D EK+K LF ++G+V V + PG S
Sbjct: 181 LPDPS---TTVKSVYVGNLPPSLVADEGGEEKLKALFGKYGDVETVFVYKPRPGDASASA 237
Query: 321 KRDFGFIHYAERSSALKAVKDTEK-----------YEIDGQVLEVVLAKPQTDK 363
KR+F F+HYA R SAL A + ++ EIDG L+V +AKP D+
Sbjct: 238 KRNFAFVHYASRESALAAAEAGKRSDDADATPSAPIEIDGCALDVTMAKPMKDQ 291
>gi|189234965|ref|XP_973687.2| PREDICTED: similar to CG17838 CG17838-PB [Tribolium castaneum]
Length = 905
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 165/269 (61%), Gaps = 17/269 (6%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F +++ A+
Sbjct: 173 PGAGCEVFCGKIPKDMYEDELIPLFEGCGTIWDLRLMMDPMTGTNRGYAFVTFTTRDAAQ 232
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG------PGVE 215
+A+ +L + E+K GKT++ ++S RLF+GN+PK+ ++E ++E+ G G+
Sbjct: 233 QAVQKLDNHEIKPGKTLKINISVPNLRLFVGNIPKSKGKEE---ILEEFGKLTGYTAGLV 289
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
+ + P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD
Sbjct: 290 EVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDE 349
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSA 335
S+VK LYV+N+ S EK+KE F+ +G+V +V +D+ FIH+ +R +A
Sbjct: 350 Q-TMSKVKVLYVRNLTQEISEEKLKEAFEAYGKVERV------KKIKDYAFIHFEDRENA 402
Query: 336 LKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
+KA+++ + E+ G +EV LAKP +DKK
Sbjct: 403 VKAMEELDGKEMGGSNIEVSLAKPPSDKK 431
>gi|224613218|gb|ACN60188.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 583
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 165/267 (61%), Gaps = 8/267 (2%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F +KE
Sbjct: 111 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 170
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A +A++ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 171 ASEAVNLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQMVEEFAKVTEGLNDVIL 230
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD S
Sbjct: 231 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNAVTVEWADPIEEPD-SEVM 289
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
++VK L+V+N+ ++ + E +++ F + G + +V +D+ FIH+ ER SA+KA+
Sbjct: 290 AKVKVLFVRNLANSVTEEILEKSFGQFGRLERV------KKLKDYAFIHFDERDSAVKAL 343
Query: 340 KDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ +++G+ +++V AKP K+ E
Sbjct: 344 AEMNGKDLEGEHIDIVFAKPPDQKRKE 370
>gi|348518315|ref|XP_003446677.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Oreochromis niloticus]
Length = 629
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 162/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G+E+F+G +P+D E++L L E G ++++RLM D S ++G+AF++F SKE A+
Sbjct: 158 PPVGTEIFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSSLNRGYAFITFCSKEGAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANGVTEELLEKSFSEFGKLERV------KKLKDYAFIHFEERDGAVKALEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
E++G+ +E+V AKP K+ E
Sbjct: 391 MNGKELEGEPIEIVFAKPPDQKRKE 415
>gi|171846506|gb|AAI61767.1| syncrip protein [Xenopus (Silurana) tropicalis]
Length = 638
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 173 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 232
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 233 EAVKLYNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 292
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 293 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 351
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 352 VKVLFVRNLANTVTEEILEKAFGQFGKLERV------KKLKDYAFIHFDERVGAVKAMEE 405
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
E++G+ +E+V AKP K+ E
Sbjct: 406 MNGKELEGENIEIVFAKPPDQKRKE 430
>gi|345326436|ref|XP_003431043.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 562
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|89272515|emb|CAJ81560.1| heterogeneous nuclear ribonucleoprotein R [Xenopus (Silurana)
tropicalis]
Length = 535
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 162/267 (60%), Gaps = 8/267 (2%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F +KE
Sbjct: 61 AQPGIGTEVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEA 120
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A++A+ + E++ GK I +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 121 AQEAVKLCDNYEIRPGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 180
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A
Sbjct: 181 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEIMA 240
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+VK L+V+N+ + E +++ F G++ +V +D+ F+H+ ER +A++A+
Sbjct: 241 -KVKVLFVRNLSSTVTEEILEKAFSVFGKLERV------KKLKDYAFVHFDERDAAVRAM 293
Query: 340 KDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+ +E+VLAKP K+ E
Sbjct: 294 DEMNGTELEGEEIEIVLAKPPDKKRKE 320
>gi|149637545|ref|XP_001510103.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ornithorhynchus anatinus]
Length = 623
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|301608798|ref|XP_002933974.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Xenopus
(Silurana) tropicalis]
Length = 770
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 305 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 364
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 365 EAVKLYNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 424
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 425 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 483
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 484 VKVLFVRNLANTVTEEILEKAFGQFGKLERV------KKLKDYAFIHFDERVGAVKAMEE 537
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
E++G+ +E+V AKP K+ E
Sbjct: 538 MNGKELEGENIEIVFAKPPDQKRKE 562
>gi|301618964|ref|XP_002938875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Xenopus
(Silurana) tropicalis]
Length = 532
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 162/267 (60%), Gaps = 8/267 (2%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F +KE
Sbjct: 58 AQPGIGTEVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEA 117
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A++A+ + E++ GK I +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 118 AQEAVKLCDNYEIRPGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 177
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A
Sbjct: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEIMA 237
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+VK L+V+N+ + E +++ F G++ +V +D+ F+H+ ER +A++A+
Sbjct: 238 -KVKVLFVRNLSSTVTEEILEKAFSVFGKLERV------KKLKDYAFVHFDERDAAVRAM 290
Query: 340 KDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+ +E+VLAKP K+ E
Sbjct: 291 DEMNGTELEGEEIEIVLAKPPDKKRKE 317
>gi|5031512|gb|AAD38198.1|AF155568_1 NSAP1 protein [Homo sapiens]
Length = 562
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSQVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|417411732|gb|JAA52293.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 577
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 173 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 232
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 233 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 292
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 293 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 351
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 352 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 405
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 406 MNGKDLEGENIEIVFAKPPDQKRKE 430
>gi|189217790|ref|NP_001121335.1| heterogeneous nuclear ribonucleoprotein R [Xenopus laevis]
gi|171847308|gb|AAI61702.1| LOC100158425 protein [Xenopus laevis]
Length = 511
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 162/267 (60%), Gaps = 8/267 (2%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F +KE
Sbjct: 58 AQPGIGTEVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEA 117
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A++A+ + E++ GK I +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 118 AQEAVKLCDNYEIRTGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLLDVIL 177
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A
Sbjct: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEIMA 237
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+VK L+V+N+ + E +++ F G++ +V +D+ F+H+ ER +A++A+
Sbjct: 238 -KVKVLFVRNLSSTVTEEILEKAFSVFGKLERV------KKLKDYAFVHFDERDAAVRAM 290
Query: 340 KDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+ +E+VLAKP K+ E
Sbjct: 291 DEMNGAELEGEEIEIVLAKPPDKKRKE 317
>gi|395857930|ref|XP_003801333.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Otolemur garnettii]
Length = 562
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|228008400|ref|NP_001153149.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Homo sapiens]
gi|296198708|ref|XP_002746830.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Callithrix jacchus]
gi|301775581|ref|XP_002923211.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Ailuropoda melanoleuca]
gi|332218413|ref|XP_003258350.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778175|ref|XP_003431698.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Canis lupus familiaris]
gi|348578328|ref|XP_003474935.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Cavia porcellus]
gi|358413802|ref|XP_589161.5| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|359068803|ref|XP_002690248.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|395737455|ref|XP_003776918.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Pongo abelii]
gi|397504632|ref|XP_003822888.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Pan
paniscus]
gi|402867568|ref|XP_003897915.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Papio anubis]
gi|426234728|ref|XP_004011344.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ovis aries]
gi|119569010|gb|EAW48625.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|119569011|gb|EAW48626.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|380783245|gb|AFE63498.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|383409779|gb|AFH28103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|384940996|gb|AFI34103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|410227734|gb|JAA11086.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255522|gb|JAA15728.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304908|gb|JAA31054.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 562
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|147900289|ref|NP_001084953.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Xenopus
laevis]
gi|47122815|gb|AAH70529.1| MGC78820 protein [Xenopus laevis]
Length = 624
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 162/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 162 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 221
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 222 EAVKLYNNYEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 281
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD S+
Sbjct: 282 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPD-PEVMSK 340
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+ +
Sbjct: 341 VKVLFVRNLANTVTEEILEKAFGQFGKLERV------KKLKDYAFIHFDERVGAVKAMDE 394
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
E++G+ +E+V AKP K+ E
Sbjct: 395 MNGKELEGENIEIVFAKPPDQKRKE 419
>gi|426353899|ref|XP_004044412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 464
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 60 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 119
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 120 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 238
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 239 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 292
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 293 MNGKDLEGENIEIVFAKPPDQKRKE 317
>gi|326916225|ref|XP_003204410.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Meleagris gallopavo]
Length = 562
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|426353897|ref|XP_004044411.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 562
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|410959606|ref|XP_004001668.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Felis catus]
Length = 562
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|327261565|ref|XP_003215600.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Anolis
carolinensis]
Length = 634
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 169 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCNKEAAQ 228
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 229 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 288
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 289 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 347
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ ++ + E +++ F + G++ +V +D+ FIH+ ER A+KA++
Sbjct: 348 VKVLFVRNLANSVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEG 401
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
E++G+ +E+V AKP K+ E
Sbjct: 402 MNGKELEGENIEIVFAKPPDQKRKE 426
>gi|228008291|ref|NP_006363.4| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Homo sapiens]
gi|302564259|ref|NP_001180774.1| heterogeneous nuclear ribonucleoprotein Q [Macaca mulatta]
gi|109071945|ref|XP_001089294.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 8
[Macaca mulatta]
gi|291396562|ref|XP_002714605.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Oryctolagus cuniculus]
gi|301775585|ref|XP_002923213.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Ailuropoda melanoleuca]
gi|332218419|ref|XP_003258353.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778171|ref|XP_532223.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Canis lupus familiaris]
gi|348578326|ref|XP_003474934.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Cavia porcellus]
gi|358413806|ref|XP_002705232.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|359068810|ref|XP_002690247.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|395737457|ref|XP_003776919.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Pongo abelii]
gi|397504636|ref|XP_003822890.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3 [Pan
paniscus]
gi|402867572|ref|XP_003897917.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Papio anubis]
gi|403261187|ref|XP_003923009.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Saimiri
boliviensis boliviensis]
gi|426234730|ref|XP_004011345.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ovis aries]
gi|92090361|sp|O60506.2|HNRPQ_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein
gi|62897111|dbj|BAD96496.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
gi|119569014|gb|EAW48629.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|119569015|gb|EAW48630.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|261858370|dbj|BAI45707.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
gi|281344763|gb|EFB20347.1| hypothetical protein PANDA_012313 [Ailuropoda melanoleuca]
gi|387539924|gb|AFJ70589.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|431838171|gb|ELK00103.1| Heterogeneous nuclear ribonucleoprotein Q [Pteropus alecto]
gi|440903331|gb|ELR54008.1| Heterogeneous nuclear ribonucleoprotein Q [Bos grunniens mutus]
Length = 623
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|348578330|ref|XP_003474936.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Cavia porcellus]
Length = 533
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 246
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 247 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 300
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 301 MNGKDLEGENIEIVFAKPPDQKRKE 325
>gi|62087776|dbj|BAD92335.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
Length = 534
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 130 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 189
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 190 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 249
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 250 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 308
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 309 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 362
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 363 MNGKDLEGENIEIVFAKPPDQKRKE 387
>gi|417412066|gb|JAA52448.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 638
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 173 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 232
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 233 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 292
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 293 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 351
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 352 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 405
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 406 MNGKDLEGENIEIVFAKPPDQKRKE 430
>gi|228008293|ref|NP_001153148.1| heterogeneous nuclear ribonucleoprotein Q isoform 5 [Homo sapiens]
gi|390461868|ref|XP_003732753.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Callithrix
jacchus]
gi|119569009|gb|EAW48624.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_c [Homo sapiens]
Length = 561
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|228008396|ref|NP_001153145.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Homo sapiens]
gi|332218415|ref|XP_003258351.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778173|ref|XP_003431697.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Canis lupus familiaris]
gi|358413804|ref|XP_003582661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|359068807|ref|XP_003586521.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|426234732|ref|XP_004011346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Ovis aries]
gi|119569008|gb|EAW48623.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_b [Homo sapiens]
gi|221042908|dbj|BAH13131.1| unnamed protein product [Homo sapiens]
gi|380783243|gb|AFE63497.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
Length = 464
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 60 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 119
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 120 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 238
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 239 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 292
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 293 MNGKDLEGENIEIVFAKPPDQKRKE 317
>gi|344264673|ref|XP_003404416.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Loxodonta africana]
Length = 559
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 155 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 214
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 215 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 274
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 275 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 333
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 334 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 387
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 388 MNGKDLEGENIEIVFAKPPDQKRKE 412
>gi|426353905|ref|XP_004044415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 623
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|126310303|ref|XP_001366745.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Monodelphis domestica]
Length = 623
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|350578257|ref|XP_001927626.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Sus
scrofa]
Length = 623
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|194216236|ref|XP_001915171.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Equus caballus]
Length = 562
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|351702127|gb|EHB05046.1| Heterogeneous nuclear ribonucleoprotein Q [Heterocephalus glaber]
Length = 623
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|126306127|ref|XP_001362774.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Monodelphis domestica]
Length = 561
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|189069313|dbj|BAG36345.1| unnamed protein product [Homo sapiens]
Length = 623
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|194216234|ref|XP_001915169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Equus caballus]
Length = 623
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|114145636|ref|NP_001041381.1| heterogeneous nuclear ribonucleoprotein Q [Rattus norvegicus]
gi|44888314|sp|Q7TP47.1|HNRPQ_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Liver regeneration-related
protein LRRG077; AltName: Full=Synaptotagmin-binding,
cytoplasmic RNA-interacting protein
gi|33086582|gb|AAP92603.1| Ab2-339 [Rattus norvegicus]
Length = 533
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 246
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 247 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 300
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 301 MNGKDLEGENIEIVFAKPPDQKRKE 325
>gi|444729721|gb|ELW70128.1| Heterogeneous nuclear ribonucleoprotein Q [Tupaia chinensis]
Length = 659
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 194 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 253
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 254 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 313
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 314 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 372
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 373 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 426
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 427 MNGKDLEGENIEIVFAKPPDQKRKE 451
>gi|355722853|gb|AES07708.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Mustela
putorius furo]
Length = 698
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 260 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 319
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 320 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 379
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 380 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 438
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 439 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 492
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 493 MNGKDLEGENIEIVFAKPPDQKRKE 517
>gi|410911698|ref|XP_003969327.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Takifugu
rubripes]
Length = 629
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF+++ +K+ A+
Sbjct: 159 PGIGTEVFVGKIPRDLYEDELVPLFESAGAIWDLRLMMDPLSGQNRGYAFITYCNKDDAQ 218
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KA+ + E++ GK + +S NRLF+G++PKN T + + V G++ + L +
Sbjct: 219 KAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVILYQ 278
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP + PD A +
Sbjct: 279 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPEVMA-K 337
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F + G++ +V +D+ F+H+ ER +A++A+ +
Sbjct: 338 VKVLFVRNLATAVTEELLEKTFAQFGKLERV------KKLKDYAFVHFEERDAAVRAMDE 391
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
E+ G+ +E+VLAKP K+ E
Sbjct: 392 MNGKEVGGEEIEIVLAKPPDKKRKE 416
>gi|114145493|ref|NP_062640.2| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Mus musculus]
gi|44888326|sp|Q7TMK9.2|HNRPQ_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein; AltName: Full=pp68
gi|148694587|gb|EDL26534.1| mCG16769, isoform CRA_a [Mus musculus]
gi|148694589|gb|EDL26536.1| mCG16769, isoform CRA_a [Mus musculus]
Length = 623
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|383415175|gb|AFH30801.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|384944782|gb|AFI35996.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|410227736|gb|JAA11087.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255524|gb|JAA15729.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304910|gb|JAA31055.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 624
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|33416526|gb|AAH55863.1| Syncrip protein, partial [Mus musculus]
Length = 667
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 202 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 261
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 262 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 321
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 322 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 380
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 381 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 434
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 435 MNGKDLEGENIEIVFAKPPDQKRKE 459
>gi|29788787|ref|NP_062770.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Mus musculus]
gi|26330244|dbj|BAC28852.1| unnamed protein product [Mus musculus]
gi|26346458|dbj|BAC36880.1| unnamed protein product [Mus musculus]
gi|148694591|gb|EDL26538.1| mCG16769, isoform CRA_d [Mus musculus]
Length = 562
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|344264671|ref|XP_003404415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Loxodonta africana]
Length = 620
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 155 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 214
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 215 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 274
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 275 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 333
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 334 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 387
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 388 MNGKDLEGENIEIVFAKPPDQKRKE 412
>gi|354466426|ref|XP_003495675.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Cricetulus griseus]
gi|344238401|gb|EGV94504.1| Heterogeneous nuclear ribonucleoprotein Q [Cricetulus griseus]
Length = 562
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|395534549|ref|XP_003769303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Sarcophilus
harrisii]
Length = 605
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|37589144|gb|AAH58807.1| Syncrip protein, partial [Mus musculus]
Length = 635
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 231 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 290
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 291 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 350
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 351 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 409
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 410 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 463
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 464 MNGKDLEGENIEIVFAKPPDQKRKE 488
>gi|6576815|dbj|BAA88342.1| SYNCRIP [Mus musculus]
gi|51329959|gb|AAH80309.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
gi|127797499|gb|AAH41148.2| Syncrip protein [Mus musculus]
gi|127801712|gb|AAI08364.2| Syncrip protein [Mus musculus]
Length = 561
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|354466428|ref|XP_003495676.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Cricetulus griseus]
Length = 623
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|148694590|gb|EDL26537.1| mCG16769, isoform CRA_c [Mus musculus]
Length = 612
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 209 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 268
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 269 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 328
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 329 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 387
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 388 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 441
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 442 MNGKDLEGENIEIVFAKPPDQKRKE 466
>gi|149018946|gb|EDL77587.1| rCG25340, isoform CRA_c [Rattus norvegicus]
gi|149018949|gb|EDL77590.1| rCG25340, isoform CRA_c [Rattus norvegicus]
Length = 462
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 168/279 (60%), Gaps = 8/279 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 60 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 119
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 120 EAVKRYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 238
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 239 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 292
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+++G+ +E+V AKP K+ E G++ T +
Sbjct: 293 MNGKDLEGENIEIVFAKPPDQKRKERKAQRQAGMMITTI 331
>gi|149018945|gb|EDL77586.1| rCG25340, isoform CRA_b [Rattus norvegicus]
gi|149018948|gb|EDL77589.1| rCG25340, isoform CRA_b [Rattus norvegicus]
Length = 458
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 168/279 (60%), Gaps = 8/279 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 60 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 119
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 120 EAVKRYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 238
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 239 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 292
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+++G+ +E+V AKP K+ E G++ T +
Sbjct: 293 MNGKDLEGENIEIVFAKPPDQKRKERKAQRQAGMMITTI 331
>gi|47219493|emb|CAG10857.1| unnamed protein product [Tetraodon nigroviridis]
Length = 629
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF+++ +K+ A+
Sbjct: 159 PGIGTEVFVGKIPRDLYEDELVPLFESAGAIWDLRLMMDPLSGQNRGYAFITYCNKDDAQ 218
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KA+ + E++ GK + +S NRLF+G++PKN T + + V G++ + L +
Sbjct: 219 KAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVILYQ 278
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP + PD A +
Sbjct: 279 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPEVMA-K 337
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F + G++ +V +D+ F+H+ ER +A++A+ +
Sbjct: 338 VKVLFVRNLATAVTEELLEKTFAQFGKLERV------KKLKDYAFVHFEERDAAVRAMDE 391
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
E+ G+ +E+VLAKP K+ E
Sbjct: 392 MNGKEVGGEEIEIVLAKPPDKKRKE 416
>gi|15986735|gb|AAL11726.1|AF408434_1 RRM RNA binding protein NSAP1 [Mus musculus]
Length = 558
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 93 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 152
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 153 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 212
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 213 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 271
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 272 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 325
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 326 MNGKDLEGENIEIVFAKPPDQKRKE 350
>gi|255069811|gb|ACU00255.1| AT04629p [Drosophila melanogaster]
Length = 489
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 158/262 (60%), Gaps = 8/262 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F ++E A
Sbjct: 229 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 288
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
A+ +L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + +
Sbjct: 289 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 348
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P + +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S
Sbjct: 349 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMS 407
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++
Sbjct: 408 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMR 461
Query: 341 DTEKYEIDGQVLEVVLAKPQTD 362
EI +EV LAKP +D
Sbjct: 462 GLNGKEIGASNIEVSLAKPPSD 483
>gi|348529965|ref|XP_003452482.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Oreochromis
niloticus]
Length = 631
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P +G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF+++ +K+ A+
Sbjct: 161 PGSGTEVFVGKIPRDLYEDELVPLFESAGPIWDLRLMMDPLSGQNRGYAFITYCNKDDAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KA+ + E++ GK + +S NRLF+G++PKN T + + V G++ + L
Sbjct: 221 KAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP + PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+ + + E +++ F + G++ +V +D+ F+H+ ER +A+KA+++
Sbjct: 340 VKVLFVRKLATAVTEELLEKTFSQFGKLERV------KKLKDYAFVHFEERDAAVKAMEE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
E+ G+ +E+VLAKP K+ E
Sbjct: 394 MNGKELGGEEIEIVLAKPPDKKRKE 418
>gi|15809590|gb|AAK59705.1| hnRNP Q1 [Homo sapiens]
Length = 561
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 162/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NR F F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|3037013|gb|AAC12926.1| Gry-rbp [Homo sapiens]
gi|15809586|gb|AAK59703.1| hnRNP Q3 [Homo sapiens]
Length = 623
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 162/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NR F F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|260791540|ref|XP_002590787.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
gi|229275983|gb|EEN46798.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
Length = 637
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 165/273 (60%), Gaps = 14/273 (5%)
Query: 101 ALPPNG-----SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSF 155
A+PP ++VF+ +P+D E++L L E G +F++RLM D SG+++G+AFV++
Sbjct: 143 AMPPPCLVLLLAQVFVSKIPRDMFEDELIPLFEKPGPIFDLRLMMDPLSGQNRGYAFVTY 202
Query: 156 RSKEFAKKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+KE A+ A+ +L + E+ KG+ + +S NRLF+G++PKN ++ E V G+
Sbjct: 203 TTKESAQDAVKQLDNYEIRKGRWLGVCISVANNRLFVGSIPKNKSKQEIFDEFGKVTNGL 262
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN-TPTISWADPKSTP 273
+ + + P++ +NRGF+F+ Y ++ A +R+++++ K+ GN T T+ WADP P
Sbjct: 263 KDVIIYYMPEDKRKNRGFAFLEYLSHKEASLARRRLMSGRIKVWGNITVTVDWADPIEEP 322
Query: 274 DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERS 333
D S+VK LYV+N+ + E I+ F+ +G V +V +D+ F+H+ R
Sbjct: 323 DDE-VMSKVKVLYVRNLAVEAAEEIIQAKFEPYGTVERV------KKIKDYAFVHFENRE 375
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A+KA++D E++G +E+ LAKP ++KK E
Sbjct: 376 DAIKAMEDLNGKELEGSAMEISLAKPPSEKKKE 408
>gi|26347007|dbj|BAC37152.1| unnamed protein product [Mus musculus]
Length = 491
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 162/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 87 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 146
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 147 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 206
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 207 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 265
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 266 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 319
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V A P K+ E
Sbjct: 320 MNGKDLEGENIEIVFANPPDKKRKE 344
>gi|223648918|gb|ACN11217.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 619
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 163/267 (61%), Gaps = 8/267 (2%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F +KE
Sbjct: 167 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 226
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A +A++ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 227 ASEAVNLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFAKVTEGLNDVIL 286
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A
Sbjct: 287 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA 346
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+VK L+V+N+ ++ + E +++ F + G++ +V +D+ F+H+ ER +A+KA+
Sbjct: 347 -KVKVLFVRNLANSVTEEILEKSFSQFGKLERV------KKLKDYAFVHFDERDAAVKAL 399
Query: 340 KDTEKYEIDGQVLEVVLAKPQTDKKTE 366
++G+ +++V AKP K+ E
Sbjct: 400 AQMNGKVLEGEHIDIVFAKPPDQKRKE 426
>gi|127799069|gb|AAH50079.2| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
Length = 562
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 162/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RL D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLTMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>gi|154757562|gb|AAI51724.1| SYNCRIP protein [Bos taurus]
Length = 456
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 160/258 (62%), Gaps = 8/258 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 198 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 257
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 258 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 317
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 318 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 376
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 377 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 430
Query: 342 TEKYEIDGQVLEVVLAKP 359
+++G+ +E+V AKP
Sbjct: 431 MNGKDLEGENIEIVFAKP 448
>gi|116283697|gb|AAH24283.1| SYNCRIP protein [Homo sapiens]
Length = 453
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 160/258 (62%), Gaps = 8/258 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 194 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 253
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 254 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 313
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 314 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 372
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 373 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 426
Query: 342 TEKYEIDGQVLEVVLAKP 359
+++G+ +E+V AKP
Sbjct: 427 MNGKDLEGENIEIVFAKP 444
>gi|301775589|ref|XP_002923215.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Ailuropoda melanoleuca]
Length = 626
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 165/269 (61%), Gaps = 13/269 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTE----DEFRKVIEDVGPGVETI 217
+A+ ++ E++ GK I +S NRLF+G++PK+ T+ +EF KV + G+ +
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVT-GLWEGLTDV 276
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
L P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD
Sbjct: 277 ILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEV 336
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
A +VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+K
Sbjct: 337 MA-KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVK 389
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A+++ +++G+ +E+V AKP K+ E
Sbjct: 390 AMEEMNGKDLEGENIEIVFAKPPDQKRKE 418
>gi|33874520|gb|AAH15575.1| SYNCRIP protein, partial [Homo sapiens]
Length = 417
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 160/258 (62%), Gaps = 8/258 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKP 359
+++G+ +E+V AKP
Sbjct: 391 MNGKDLEGENIEIVFAKP 408
>gi|156377784|ref|XP_001630826.1| predicted protein [Nematostella vectensis]
gi|156217854|gb|EDO38763.1| predicted protein [Nematostella vectensis]
Length = 587
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 157/256 (61%), Gaps = 9/256 (3%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S+VFIG +P+D E++L + E G +++ RLM D SG +KGFAF +F +K+ A+ A+
Sbjct: 152 SQVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVK 211
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
+L +KE++ GK + +S +RLF+G++PK ++ E + V G++ + +
Sbjct: 212 KLDNKEIRPGKRLGVCISVANSRLFVGSIPKTKSKQEILEEFSKVTNGLDDVIVYLSADQ 271
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN-TPTISWADPKSTPDHSAAASQVKA 284
+NRGF+F+ Y ++ A +R+++ + K+ GN T+ WADP+ PD A +VK
Sbjct: 272 KGKNRGFAFLEYESHQAASLARRRLASGRIKVWGNIVVTVDWADPQEEPDDD-AMKKVKV 330
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344
+Y++N+ + + EK+KE + ++G V +V +D+ F+H+ ER ALKA+++T+
Sbjct: 331 VYLRNLSPSITEEKLKEEYSQYGAVDRV------KKLKDYAFVHFTERDHALKAIEETDG 384
Query: 345 YEIDGQVLEVVLAKPQ 360
E+DG +E LAKPQ
Sbjct: 385 KEMDGLKIEASLAKPQ 400
>gi|297611204|ref|NP_001065705.2| Os11g0139500 [Oryza sativa Japonica Group]
gi|108863976|gb|ABG22354.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215767918|dbj|BAH00147.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255679771|dbj|BAF27550.2| Os11g0139500 [Oryza sativa Japonica Group]
Length = 252
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 96/202 (47%), Positives = 135/202 (66%), Gaps = 16/202 (7%)
Query: 250 MLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309
M + FKLD N PT+SWADPK+ + S + SQVK++YVKN+P N + ++K LF+ HGE+
Sbjct: 1 MSSPTFKLDSNAPTVSWADPKN--NDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEI 58
Query: 310 TKVVMPPGKSGKRD-FGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK-PQTDKKTEG 367
KVV+PP + G + +GF+H+ +RS A++A+++TE+YE+DGQVL+ LAK P DKK +
Sbjct: 59 EKVVLPPSRGGHDNRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDR 118
Query: 368 T-FPYSPG--LVPTHLPHAGYGGFAGTPYGSVGTGFGVA-AGFQQPMIYGRGPMPSGMHM 423
P S G L+P++ P GYG SV +G A A QPM+Y P G M
Sbjct: 119 VPLPSSNGAPLLPSY-PPLGYGIM------SVPGAYGAAPASTAQPMLYAPR-APPGAAM 170
Query: 424 VPMVLPDGQIGYVLQQPGVQMP 445
VPM+LPDG++ YV+QQPG Q+P
Sbjct: 171 VPMMLPDGRLVYVVQQPGGQLP 192
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
V++ LPK+ ++ L+ L E G++ +V ++ G + FV F+ + A +A+
Sbjct: 33 SVYVKNLPKNVTQAQLKRLFEHHGEIEKV-VLPPSRGGHDNRYGFVHFKDRSMAMRALQN 91
Query: 168 LHSKELKGKTIRCSLSE 184
EL G+ + CSL++
Sbjct: 92 TERYELDGQVLDCSLAK 108
>gi|291222526|ref|XP_002731265.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Saccoglossus kowalevskii]
Length = 648
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 163/262 (62%), Gaps = 9/262 (3%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ +VF+G +P+D E+++ L E G ++++RLM D SG ++G+AFV+F +E A++A
Sbjct: 172 DAEQVFVGKIPRDMFEDEIIPLFEKCGKIWDLRLMMDPLSGLNRGYAFVTFCDREGAQEA 231
Query: 165 IDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+ +L + E+ KGK + +S +RLF+G++PK ++DE + G+ + + P
Sbjct: 232 VKQLDNHEIRKGKHLGVCISVANHRLFVGSIPKTKSKDEILEEFNKHVGGLTDVIIYHMP 291
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAAASQV 282
++ +NRGF+F+ + ++ A +R+++++ K+ GN+ T+ WADP+ PD A +V
Sbjct: 292 EDRKKNRGFAFLHFESHKAASLARRRLMSGRIKVWGNSNVTVDWADPQEEPDEETMA-KV 350
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
K LYV+N+ + EK+KE FQ G V +V +D+ F+H+ ER +A+KA+++
Sbjct: 351 KVLYVRNLTPDAEEEKLKEAFQAFGTVERV------KKLKDYCFVHFEERDAAVKAMEEL 404
Query: 343 EKYEIDGQVLEVVLAKPQTDKK 364
E++G V+++ LAKP ++ K
Sbjct: 405 NGKEVEGSVVDISLAKPPSENK 426
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 255 FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV--TKV 312
+ LD T + P D A + + ++V IP + ++I LF++ G++ ++
Sbjct: 146 YSLDVTTGQRKYGGPPPDWDGPAPSGDAEQVFVGKIPRDMFEDEIIPLFEKCGKIWDLRL 205
Query: 313 VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI-DGQVLEVVLA 357
+M P R + F+ + +R A +AVK + +EI G+ L V ++
Sbjct: 206 MMDPLSGLNRGYAFVTFCDREGAQEAVKQLDNHEIRKGKHLGVCIS 251
>gi|47213373|emb|CAF90992.1| unnamed protein product [Tetraodon nigroviridis]
Length = 611
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 130/404 (32%), Positives = 195/404 (48%), Gaps = 76/404 (18%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
GSE+F+G LP+D E++L LCE G ++EVR+M D SG ++G+AFV+F +K+ AK A+
Sbjct: 56 GSEIFVGKLPRDLFEDELVPLCEKFGQIYEVRMMMDF-SGNNRGYAFVTFSNKQEAKAAM 114
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E + V GV + +
Sbjct: 115 KQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEIMCEMRKVTEGVVDVIVYPSAA 174
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ S+NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D A+ VK
Sbjct: 175 DKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVEVDEDTMAT-VKI 233
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344
LYV+N+ T+ E I++ F EV +V RD+ F+H+A+R A+ A+K+
Sbjct: 234 LYVRNLMLQTTEETIEKEFNSLKEVERV------KKIRDYAFVHFAQREDAIHAMKELNG 287
Query: 345 YEIDGQVLEVVLAKP--------------------QTDKKTEGTFPYSPGLVPTHLPHAG 384
+DG +EV LAKP QTD T YS G V + P A
Sbjct: 288 KVVDGSPIEVTLAKPVDKDSYVRYTRGTGGRGGSLQTDYAT-----YSVGQV--YDPSAA 340
Query: 385 YGGFAGTPYGSVGTGFGVAAG-FQQPM----IYGRGPM-PSGMHMVPMVLPDGQIGYVLQ 438
Y G P + G F+ P+ I GRG + P + + M +P G G
Sbjct: 341 Y---LGAPMFYAPQTYATMPGQFRFPLAKTHIGGRGLIRPPSVREIYMTVPVGAAG---- 393
Query: 439 QPGVQMPPPRPRRVDRSNGPGGRG-----------GRGGSSGGD 471
G GGRG GRGGSSG
Sbjct: 394 ----------------VRGLGGRGYLAYASGVGALGRGGSSGAS 421
>gi|321468659|gb|EFX79643.1| hypothetical protein DAPPUDRAFT_319432 [Daphnia pulex]
Length = 695
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 154/261 (59%), Gaps = 8/261 (3%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
NG EVF G +P+D E++L L E G ++++RLM D + ++G+AFV+F + E A++A
Sbjct: 173 NGCEVFCGKIPRDVYEDELIPLFEKCGTIWDLRLMMDPLTNLNRGYAFVTFTTTEAAQEA 232
Query: 165 IDELHSKELKG-KTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+++L+ E+KG + ++ ++S RLF+GN+PK+ E + V G+ + + P
Sbjct: 233 VNQLNDLEMKGGRHLKINVSVPNLRLFVGNIPKSKGNVEIMEEFSKVTAGLAEVIIYSSP 292
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
+ +NRGF F+ Y ++ A +++++ K+ G + WADP+ PD+ S+VK
Sbjct: 293 DDRRKNRGFCFLEYDSHKSASLAKRRLSTGRVKIFGCDIIVDWADPQEEPDNDTM-SRVK 351
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
LYV+N+ + EK+KE F+ HG + +V +D+ F+H+ ER A++A+
Sbjct: 352 VLYVRNLTQEFTEEKLKEAFEAHGPIQRV------KKIKDYAFVHFEERDDAVQAMDALN 405
Query: 344 KYEIDGQVLEVVLAKPQTDKK 364
+ + G LEV LAKP +D+K
Sbjct: 406 GHTLYGANLEVSLAKPPSDRK 426
>gi|47550699|ref|NP_999861.1| heterogeneous nuclear ribonucleoprotein Q [Danio rerio]
gi|34784487|gb|AAH56750.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
gi|46249711|gb|AAH68373.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
Length = 630
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 162/267 (60%), Gaps = 8/267 (2%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+E+F+G +P+D E++L E G ++++RLM D SG ++G+AF++F +KE
Sbjct: 156 AQPTVGTEIFVGKIPRDLFEDELVPQFEKAGPIWDLRLMMDPLSGLNRGYAFLTFCTKEA 215
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A++A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 216 AQEAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVIL 275
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A
Sbjct: 276 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVMA 335
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+VK L+V+N+ ++ + E +++ F + G + +V +D+ F+H+ +R A+KA+
Sbjct: 336 -KVKVLFVRNLANSVTEEILEKAFGQFGNLERV------KKLKDYAFVHFNDRDGAVKAL 388
Query: 340 KDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+ +E+V AKP K+ E
Sbjct: 389 TEMNGKELEGEHIEIVFAKPPDQKRKE 415
>gi|345320008|ref|XP_001511604.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R
[Ornithorhynchus anatinus]
Length = 479
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L + G ++++RLM D SG+++G+AF++F K+ A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFDKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ + E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
E++G+ +E+VLAKP K+ E
Sbjct: 394 MNGKELEGEEIEIVLAKPPDKKRKE 418
>gi|426234734|ref|XP_004011347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Ovis aries]
Length = 410
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 160/260 (61%), Gaps = 8/260 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A++A+
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L P +
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDK 130
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 131 KKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-KVKVLF 189
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++ +
Sbjct: 190 VRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEEMNGKD 243
Query: 347 IDGQVLEVVLAKPQTDKKTE 366
++G+ +E+V AKP K+ E
Sbjct: 244 LEGENIEIVFAKPPDQKRKE 263
>gi|395857934|ref|XP_003801335.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Otolemur garnettii]
Length = 410
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 160/260 (61%), Gaps = 8/260 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A++A+
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L P +
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDK 130
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 131 KKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-KVKVLF 189
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++ +
Sbjct: 190 VRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEEMNGKD 243
Query: 347 IDGQVLEVVLAKPQTDKKTE 366
++G+ +E+V AKP K+ E
Sbjct: 244 LEGENIEIVFAKPPDQKRKE 263
>gi|432881549|ref|XP_004073835.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Oryzias
latipes]
Length = 633
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 161/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF+++ +K+ A+
Sbjct: 163 PGIGTEVFVGKIPRDLYEDELVPLFESAGPIWDLRLMMDPLSGQNRGYAFITYCNKDDAQ 222
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KA+ + E++ GK + +S NRLF+G++PKN T + + V G++ + L
Sbjct: 223 KAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQDVILYH 282
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP + PD A +
Sbjct: 283 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPEVMA-K 341
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+ + + E +++ F + G++ +V +D+ F+H+ ER +A++A++
Sbjct: 342 VKVLFVRKLATAVTEELLEKTFSQFGKLERV------KKLKDYAFVHFEERDAAVQAMEG 395
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
E+ G+ +E+VLAKP K+ E
Sbjct: 396 MNGKELGGEEIEIVLAKPPDKKRKE 420
>gi|359338991|ref|NP_001240700.1| heterogeneous nuclear ribonucleoprotein Q isoform 7 [Homo sapiens]
gi|426353901|ref|XP_004044413.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
gi|441601143|ref|XP_004087662.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|119569007|gb|EAW48622.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_a [Homo sapiens]
Length = 410
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 160/260 (61%), Gaps = 8/260 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A++A+
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L P +
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDK 130
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 131 KKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-KVKVLF 189
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++ +
Sbjct: 190 VRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEEMNGKD 243
Query: 347 IDGQVLEVVLAKPQTDKKTE 366
++G+ +E+V AKP K+ E
Sbjct: 244 LEGENIEIVFAKPPDQKRKE 263
>gi|332026895|gb|EGI66996.1| Heterogeneous nuclear ribonucleoprotein Q [Acromyrmex echinatior]
Length = 724
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 160/310 (51%), Gaps = 55/310 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D SG ++G+AF++F ++E A+
Sbjct: 156 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQ 215
Query: 163 KAIDELHSKELK------------------------------------------------ 174
+A+ EL + E+K
Sbjct: 216 QAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTGKLNDYEIRK 275
Query: 175 GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
GK I ++S +RLF+GN+PKN D+ + PG+ + + P + +NRGF F
Sbjct: 276 GKKIGVTVSYNNHRLFVGNIPKNRDRDDLFEEFTKHAPGLTEVIIYSSPDDKKKNRGFCF 335
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNT 294
+ Y ++ A +++++ K+ G + WADP+ PD S+V+ LYV+N+ +
Sbjct: 336 LEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQ-TMSKVRVLYVRNLTQDC 394
Query: 295 STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354
S EK+KE F+++G++ +V +D+ FIH+ +R +A+KA+ + E+ G +EV
Sbjct: 395 SEEKLKESFEQYGKIERV------KKIKDYAFIHFEDRDNAVKAMNELNGKEMGGSHIEV 448
Query: 355 VLAKPQTDKK 364
LAKP +DKK
Sbjct: 449 SLAKPPSDKK 458
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
++ IP + +++ LF++ G++ +++M P R + FI + R +A +AV++
Sbjct: 162 VFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQQAVREL 221
Query: 343 EKYEID-GQVLEVVLAKPQTDKKTEGTFPYSPG 374
+ +EI G+ L+V ++ P + G P S G
Sbjct: 222 DNHEIKPGKSLKVNISVPNL-RLFVGNIPKSKG 253
>gi|223648358|gb|ACN10937.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 635
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 159/267 (59%), Gaps = 8/267 (2%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F K+
Sbjct: 162 AQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDA 221
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A +A+ + E++ GK + +S NRLF+G++PKN T + + V G++ + L
Sbjct: 222 AAEAVKLCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVIL 281
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP + PD A
Sbjct: 282 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPDVMA 341
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+VK L+V+ + + E +++ F G++ +V +D+ F+H+ +R +A+KA+
Sbjct: 342 -KVKVLFVRKLATPVTEELLEKTFSAFGKLERV------KKLKDYAFVHFEDRDAAVKAM 394
Query: 340 KDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E+ G+ +E+VLAKP K+ E
Sbjct: 395 SEMNGKELGGEEIEIVLAKPPDKKRKE 421
>gi|340382530|ref|XP_003389772.1| PREDICTED: APOBEC1 complementation factor-like [Amphimedon
queenslandica]
Length = 599
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 150/262 (57%), Gaps = 9/262 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+FIG +P+D E++L + E G V+E+RLM D ++G+AFV + + AKK++
Sbjct: 31 GCEIFIGKIPRDCFEDELVPIVEKAGPVYEMRLMMDHSGSMNRGYAFVVYCKAQDAKKSV 90
Query: 166 DELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
L+ E+ KG+TI +S RLF+G +PK T++ R+ +E V GV I +
Sbjct: 91 KLLNEYEIRKGRTIGVCMSVDNCRLFVGGIPKCLTKENIREEMEKVTDGVADIIMYPAAS 150
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ S+NRGF+FV Y ++ A +R+K++N+ +L + + WA+P+ D A+ VK
Sbjct: 151 DKSKNRGFAFVEYASHRAAAMARRKLINSRVRLWNHVVAVDWAEPELEVDEETMAT-VKI 209
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344
LYV+N+ T+ ++ + F H V +V RD+ F+H+ RS AL A+K
Sbjct: 210 LYVRNLMLTTTEAQLNKAFSHHAPVERV------KKIRDYAFVHFNSRSGALTAMKAMNG 263
Query: 345 YEIDGQVLEVVLAKPQTDKKTE 366
+D V+EV LAKP DK+ +
Sbjct: 264 SVLDDAVIEVTLAKP-VDKEAQ 284
>gi|223648796|gb|ACN11156.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 633
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 162/268 (60%), Gaps = 9/268 (3%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD-KESGESKGFAFVSFRSKE 159
A P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F +K+
Sbjct: 158 AQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLLSGQNRGYAFITFCNKD 217
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
A +A+ + E++ GK + +S NRLF+G++PKN T + + V G+ +
Sbjct: 218 AALEAVKLCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRESILEDFSKVTEGLMEVI 277
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
L P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD
Sbjct: 278 LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVDEPDPEIM 337
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
A +VK L+V+N+ + E +++ F + G++ +V +D+ F+H+ +R +A+KA
Sbjct: 338 A-KVKVLFVRNLATPVTEELLEKTFSQFGKLERV------KKLKDYAFVHFEDRDAAVKA 390
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+++ E++G+ +E+VLAKP K+ E
Sbjct: 391 MQEMNCKELEGEEIEIVLAKPPDKKRKE 418
>gi|432944515|ref|XP_004083418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Oryzias latipes]
Length = 469
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D S ++G+AFV+F +KE A+
Sbjct: 165 PTVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLSSLNRGYAFVTFCAKEAAQ 224
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 225 EAVKLCNNYEIRPGKHIGACISVANNRLFVGSIPKSKTKEQIVEEFSKVTDGLNDVILYH 284
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ + ++ A +R+++++ K+ G T+ WADP PD A +
Sbjct: 285 QPDDKKKNRGFCFLEFEDHKTAAQARRRLMSGKVKVWGILVTVEWADPIEDPDPEVMA-K 343
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ ++ + E +++ F G++ +V +D+ FIH+ ER A+KA+ +
Sbjct: 344 VKVLFVRNLANSVTEEILEKSFSAFGKLERV------KKLKDYAFIHFEEREGAVKALDE 397
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
E++G+ +E+V AKP K+ E
Sbjct: 398 MNGKELEGEPIEIVFAKPPDQKRKE 422
>gi|3694986|gb|AAC62511.1| RRM RNA binding protein GRY-RBP [Mus musculus]
Length = 625
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 161/268 (60%), Gaps = 11/268 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGES---KGFAFVSFRSKE 159
P G+E+F+G +P+D E++L L E G ++++RLM D +G + +G+AFV+F +KE
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLTGLNRGYAFVTFCTKE 217
Query: 160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
A++A ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ +
Sbjct: 218 AAQEAAKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVI 277
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
L P + +NRGF F Y ++ A +R+++++ K+ GN T+ WADP PD
Sbjct: 278 LYHQPDDKKKNRGFCFQEYEDHKAAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVM 337
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
A +VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA
Sbjct: 338 A-KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKA 390
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+++ +++G+ +E+V AKP K+ E
Sbjct: 391 MEEMNGKDLEGENIEIVFAKPPDQKRKE 418
>gi|223649064|gb|ACN11290.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 631
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 158/265 (59%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F K+ A
Sbjct: 163 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAA 222
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ + E++ GK + +S NRLF+G++PKN T + + V G++ + L
Sbjct: 223 EAVKLCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVILYH 282
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP + PD A +
Sbjct: 283 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPDVMA-K 341
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+ + + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 342 VKVLFVRKLAIPVTEELLEKTFSAFGKLERV------KKLKDYAFVHFEDRDAAVKAMAE 395
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
E+ G+ +E+VLAKP K+ E
Sbjct: 396 MNGKELGGEGIEIVLAKPPDKKRKE 420
>gi|26454828|gb|AAH40844.1| SYNCRIP protein [Homo sapiens]
Length = 410
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 159/260 (61%), Gaps = 8/260 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A++A+
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L P +
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDK 130
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRG F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 131 KKNRGSCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-KVKVLF 189
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++ +
Sbjct: 190 VRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEEMNGKD 243
Query: 347 IDGQVLEVVLAKPQTDKKTE 366
++G+ +E+V AKP K+ E
Sbjct: 244 LEGENIEIVFAKPPDQKRKE 263
>gi|198418309|ref|XP_002123977.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein R
[Ciona intestinalis]
Length = 581
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 162/291 (55%), Gaps = 11/291 (3%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G +VF+G +P+ E++L L E G V++ RLM D SG+++G+ FV++ +KE
Sbjct: 156 AEPGTGCQVFVGRIPRFVFEDELVPLLEEAGVVWDFRLMMDPMSGQNRGYGFVTYTNKEA 215
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A + + L + E++ K + +S++ RLF+G++PK T+DE + + + G++ + +
Sbjct: 216 ATECVKMLDNYEIRPKKFLGVCVSQSNCRLFVGSIPKTKTKDEIFEEFDGITQGLKDVII 275
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
++ +NRGF F+ Y ++ A +R+++ + K NT ++ WADP P
Sbjct: 276 YLQTEDKMKNRGFCFLEYTDHKAASQARRRLSSVKVKAFNNTVSVDWADPVEEPSDE-IM 334
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
S+VK LY+KN+ + E + F +GEV +V +D+ F+H+ ER +A+KA+
Sbjct: 335 SKVKVLYIKNLSMKATEEIVMATFSAYGEVERV------KKIKDYAFVHFKERDNAMKAL 388
Query: 340 KDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAG 390
++ ++G+ +E+ LAKP KK E + TH GYG AG
Sbjct: 389 EELNGLNLEGEAIEISLAKPVDKKKKERQMERK---MMTHAYGMGYGNRAG 436
>gi|291233435|ref|XP_002736660.1| PREDICTED: apobec-1 complementation factor-like [Saccoglossus
kowalevskii]
Length = 625
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 151/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+F+G +P+D E++L + +G ++E+RLM D SG ++G+AFV + +KE AK
Sbjct: 71 PGRGCEIFVGKIPRDLFEDELVPVFMSVGLIYEMRLMMDF-SGNNRGYAFVMYTNKEDAK 129
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KAI +L++ E+ KG+ + S RLF+G +PKN DE ++ V GV + +
Sbjct: 130 KAIKQLNNYEIRKGRYLGVCASVDNCRLFVGGIPKNKKRDEILHEMQKVTEGVVDVIVYP 189
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y N+ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 190 SATDKTKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEQEVDEDIMKT- 248
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ NT+ E I++ F + G V +V RD+ F+H+ R AL A+
Sbjct: 249 VKVLYVRNLMLNTTEETIEKEFNSLKEGSVERV------KKIRDYAFVHFVTREDALYAL 302
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
+ +DG V+EVVLAKP
Sbjct: 303 NAMNGHNVDGSVVEVVLAKP 322
>gi|156399642|ref|XP_001638610.1| predicted protein [Nematostella vectensis]
gi|156225732|gb|EDO46547.1| predicted protein [Nematostella vectensis]
Length = 411
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 150/259 (57%), Gaps = 9/259 (3%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+PP G EVF+G +P+D E++L + E G ++EVRLM D +G+++G+AFV + SK+ A
Sbjct: 52 IPPRGCEVFVGKIPRDLYEDELVPVFETAGPIYEVRLMMDF-NGQNRGYAFVVYTSKDDA 110
Query: 162 KKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
K+ + L++ E+ KGK I S RLF+G +PK +DE + V V + +
Sbjct: 111 KRCVKTLNNYEIRKGKCIGVCSSVDNCRLFVGGIPKKVKKDEIMAEVSKVTDNVVDVIVY 170
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
Q+ ++NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D
Sbjct: 171 PSAQDKTKNRGFAFVEYISHRDAAMARRKLMTGKIQLWGHQIAVDWAEPEQEVDQE-IMD 229
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
QVK LY +N+ +T+ E I++ F + GEV +V +D+ FIH+ + A A++
Sbjct: 230 QVKVLYARNLLLSTTEETIEQAFSKFGEVERV------KKIKDYCFIHFRTKEQARDAME 283
Query: 341 DTEKYEIDGQVLEVVLAKP 359
+ E+DG +EV LAKP
Sbjct: 284 AMNETELDGNEIEVTLAKP 302
>gi|426252731|ref|XP_004020056.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Ovis aries]
Length = 587
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 152/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y N+ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H+ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|301757153|ref|XP_002914427.1| PREDICTED: APOBEC1 complementation factor-like [Ailuropoda
melanoleuca]
gi|281344706|gb|EFB20290.1| hypothetical protein PANDA_002310 [Ailuropoda melanoleuca]
Length = 592
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +++ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNRQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ SRNRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKSRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAMEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|297490704|ref|XP_002698411.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Bos taurus]
gi|296472874|tpg|DAA14989.1| TPA: apobec-1 complementation factor-like isoform 2 [Bos taurus]
Length = 587
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 153/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y N+ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H+ R A++
Sbjct: 229 S-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNREDAVE 281
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|426252733|ref|XP_004020057.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Ovis aries]
Length = 595
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 153/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y N+ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H+ R A++
Sbjct: 229 S-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNREDAVE 281
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|359079976|ref|XP_003587913.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
gi|296472873|tpg|DAA14988.1| TPA: apobec-1 complementation factor-like isoform 1 [Bos taurus]
Length = 595
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 153/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y N+ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H+ R A++
Sbjct: 229 S-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNREDAVE 281
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|344274538|ref|XP_003409072.1| PREDICTED: APOBEC1 complementation factor [Loxodonta africana]
Length = 595
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A+KA+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVKAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|358419077|ref|XP_003584119.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
Length = 461
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 152/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y N+ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H+ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|195997511|ref|XP_002108624.1| hypothetical protein TRIADDRAFT_689 [Trichoplax adhaerens]
gi|190589400|gb|EDV29422.1| hypothetical protein TRIADDRAFT_689, partial [Trichoplax adhaerens]
Length = 299
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 148/259 (57%), Gaps = 10/259 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVFIG +P+D E++L + E IG ++EVRLM D SG ++G+AFV ++SK A+
Sbjct: 43 PPRGCEVFIGKIPRDLFEDELVPVFEKIGPIYEVRLMMDF-SGNNRGYAFVVYQSKSAAR 101
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+ I +L++ E++ G+ I S RLFIG +PK +E R + + V + +
Sbjct: 102 QCIKQLNNYEIRQGRMIGVCSSVDNCRLFIGGIPKTIKREEIRSEMAKITEHVVDVIVYP 161
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKML-NANFKLDGNTPTISWADPKSTPDHSAAAS 280
+ ++NRGF+FV Y N+ A +R+K++ N N +L G+ + WA+P+ D
Sbjct: 162 SASDKTKNRGFAFVEYTNHRAAAMARRKLMNNNNVELWGHKIAVDWAEPEIEVDEE-IMD 220
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
QVK +YV+N+ +T+ E ++E+FQ V +V RD+ FIH+ + A A+
Sbjct: 221 QVKIVYVRNLLLSTTEESLREIFQSIARVERV------KKIRDYAFIHFTSKEDAHMAIT 274
Query: 341 DTEKYEIDGQVLEVVLAKP 359
IDG +EV LAKP
Sbjct: 275 LKNGQIIDGSTVEVTLAKP 293
>gi|397478941|ref|XP_003810792.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
paniscus]
Length = 616
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 144 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 203
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 204 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 263
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 264 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 322
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 323 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 376
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 377 MNGKEIEGEEIEIVLAKPPDKKRKE 401
>gi|440898350|gb|ELR49866.1| APOBEC1 complementation factor [Bos grunniens mutus]
Length = 595
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 153/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y N+ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H+ R A++
Sbjct: 229 S-VKILYVRNLMLSTSEEVIEKEFNNIKPGAVERV------KKIRDYAFVHFTNREDAVE 281
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|62990189|ref|NP_783193.2| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
gi|62471548|gb|AAH93598.1| Heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|33859724|ref|NP_083147.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|17066599|gb|AAL35332.1|AF441128_1 heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|23273731|gb|AAH38051.1| Heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 632
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|395821027|ref|XP_003783851.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Otolemur garnettii]
Length = 633
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|390465453|ref|XP_002750458.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Callithrix jacchus]
Length = 532
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 238
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 239 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 292
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 293 MNGKEIEGEEIEIVLAKPPDKKRKE 317
>gi|354483012|ref|XP_003503689.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Cricetulus griseus]
gi|344256125|gb|EGW12229.1| Heterogeneous nuclear ribonucleoprotein R [Cricetulus griseus]
Length = 633
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|395821029|ref|XP_003783852.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Otolemur garnettii]
Length = 532
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 238
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 239 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 292
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 293 MNGKEIEGEEIEIVLAKPPDKKRKE 317
>gi|144952800|gb|ABP04054.1| RNA-binding protein [Pinctada fucata]
Length = 624
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 164/281 (58%), Gaps = 23/281 (8%)
Query: 89 GEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESK 148
GEDE++ P+GSEVF G +PKD E++L L E G ++++RLM D +G ++
Sbjct: 151 GEDERN--------APSGSEVFCGKIPKDVFEDELIPLFEKCGKIWDLRLMMDPMTGFNR 202
Query: 149 GFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTED----EF 203
G+ F++F K A +A+ +L + ++K GK+I+ ++S RLF+GN+PK+ ++D EF
Sbjct: 203 GYCFITFCDKPGALEAVKQLDNYQIKPGKSIKVNISVANQRLFVGNIPKSKSKDEIMEEF 262
Query: 204 RKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263
K ED+ + I + +NRGF+F+ Y ++ A +++K+ + K+ G
Sbjct: 263 SKKTEDL---TDVIIYRSAEKENQKNRGFAFLEYESHKAASTAKRKLSSGRTKVWGCDVI 319
Query: 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD 323
+ WADP PD S S+VK LYV+N+ + + + +KE F +G+V +V +D
Sbjct: 320 VDWADPIDDPD-SDTMSKVKVLYVRNLTSDVTEDTLKEKFGEYGKVERV------KKIKD 372
Query: 324 FGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
+GFIH+ ER A+KA++ ++ +EV LAKP ++ K
Sbjct: 373 YGFIHFEERDDAVKAMEGMNGQKLGKLEMEVSLAKPPSENK 413
>gi|431891280|gb|ELK02157.1| Heterogeneous nuclear ribonucleoprotein R [Pteropus alecto]
Length = 633
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|390465455|ref|XP_002750457.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Callithrix jacchus]
gi|403287392|ref|XP_003934932.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Saimiri boliviensis boliviensis]
Length = 633
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|197102464|ref|NP_001126631.1| heterogeneous nuclear ribonucleoprotein R [Pongo abelii]
gi|55732180|emb|CAH92794.1| hypothetical protein [Pongo abelii]
Length = 633
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|456753306|gb|JAA74142.1| heterogeneous nuclear ribonucleoprotein R tv2 [Sus scrofa]
Length = 633
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|156151392|ref|NP_001095867.1| heterogeneous nuclear ribonucleoprotein R isoform 4 [Homo sapiens]
gi|73950226|ref|XP_535365.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Canis lupus familiaris]
gi|332244970|ref|XP_003271636.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Nomascus leucogenys]
gi|332807929|ref|XP_003307911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
troglodytes]
gi|402853334|ref|XP_003891351.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Papio anubis]
gi|426328273|ref|XP_004024924.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Gorilla gorilla gorilla]
gi|119615447|gb|EAW95041.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_b [Homo
sapiens]
gi|380784787|gb|AFE64269.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
Length = 532
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 238
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 239 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 292
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 293 MNGKEIEGEEIEIVLAKPPDKKRKE 317
>gi|74194838|dbj|BAE26010.1| unnamed protein product [Mus musculus]
Length = 632
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKRKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|417403514|gb|JAA48557.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 633
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|74207436|dbj|BAE30898.1| unnamed protein product [Mus musculus]
Length = 632
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|5031755|ref|NP_005817.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Homo sapiens]
gi|73950240|ref|XP_852945.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Canis lupus familiaris]
gi|301754932|ref|XP_002913314.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Ailuropoda melanoleuca]
gi|332244972|ref|XP_003271637.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Nomascus leucogenys]
gi|332807931|ref|XP_513191.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
troglodytes]
gi|397478943|ref|XP_003810793.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
paniscus]
gi|402853336|ref|XP_003891352.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Papio anubis]
gi|426328275|ref|XP_004024925.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Gorilla gorilla gorilla]
gi|12230547|sp|O43390.1|HNRPR_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein R;
Short=hnRNP R
gi|2697103|gb|AAC39540.1| heterogeneous nuclear ribonucleoprotein R [Homo sapiens]
gi|119615448|gb|EAW95042.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_c [Homo
sapiens]
gi|168277942|dbj|BAG10949.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|281351549|gb|EFB27133.1| hypothetical protein PANDA_001090 [Ailuropoda melanoleuca]
gi|380784785|gb|AFE64268.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|383408165|gb|AFH27296.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|384939486|gb|AFI33348.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|410224016|gb|JAA09227.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410262100|gb|JAA19016.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301026|gb|JAA29113.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350925|gb|JAA42066.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 633
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|338722113|ref|XP_001501475.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Equus caballus]
gi|344287364|ref|XP_003415423.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Loxodonta
africana]
gi|348571199|ref|XP_003471383.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Cavia
porcellus]
Length = 633
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|111494085|gb|AAI10390.1| HNRPR protein [Homo sapiens]
Length = 607
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 135 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 194
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 195 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 254
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 255 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 313
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 314 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 367
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 368 MNGKEIEGEEIEIVLAKPPDKKRKE 392
>gi|13435603|gb|AAH04679.1| Hnrpr protein, partial [Mus musculus]
Length = 601
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 130 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 189
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 190 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 249
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 250 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 308
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 309 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 362
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 363 MNGKEIEGEEIEIVLAKPPDKKRKE 387
>gi|189053709|dbj|BAG35961.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|129277529|ref|NP_001076077.1| heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|126717461|gb|AAI33300.1| HNRNPR protein [Bos taurus]
gi|296489987|tpg|DAA32100.1| TPA: heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|440897846|gb|ELR49456.1| Heterogeneous nuclear ribonucleoprotein R [Bos grunniens mutus]
Length = 633
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|27903509|gb|AAO24773.1| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEEAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|126342214|ref|XP_001362315.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 583
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 146/258 (56%), Gaps = 9/258 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++++RLM D + G+++G+AFV + K AK
Sbjct: 66 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYQMRLMMDFD-GKNRGYAFVMYTHKREAK 124
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL + E++ G+ + S RLFIG +PK DE + I V GV + +
Sbjct: 125 RAVRELDNHEIRPGRPLGVCCSVDNCRLFIGGIPKMKKRDEILEEISKVTEGVLDVIVYA 184
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+F+ Y ++ A +R+K++ +L G + WA+P+ D +
Sbjct: 185 SATDKTKNRGFAFIEYESHRAAAMARRKLMPGRIQLWGQQIAVDWAEPEMDVDEDVMET- 243
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ TS E I++ F + G V +V RD+ F+H+ R A++A+
Sbjct: 244 VKILYVRNLMIKTSEETIRKTFSQFGCVERV------KKIRDYAFVHFTSREDAIRAMNS 297
Query: 342 TEKYEIDGQVLEVVLAKP 359
E++G L V LAKP
Sbjct: 298 LNGTELEGSCLGVTLAKP 315
>gi|426221978|ref|XP_004005182.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Ovis aries]
Length = 633
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|335307327|ref|XP_003127745.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sus scrofa]
Length = 589
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|431839024|gb|ELK00953.1| APOBEC1 complementation factor [Pteropus alecto]
Length = 543
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 152/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D SG ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FSGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H+ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFNNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|74219109|dbj|BAE26696.1| unnamed protein product [Mus musculus]
Length = 610
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 139 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 198
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 199 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 258
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 259 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 317
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 318 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 371
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 372 MNGKEIEGEEIEIVLAKPPDKKRKE 396
>gi|72086008|ref|XP_793277.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Strongylocentrotus purpuratus]
Length = 638
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 162/268 (60%), Gaps = 12/268 (4%)
Query: 101 ALPP--NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK 158
LPP GSE+F+G +PK+ E+++ L E G+V ++RLM D +G+++G+AF +F S
Sbjct: 163 TLPPPIQGSEIFVGKIPKEMYEDEIIPLLEQCGEVHDLRLMMDPLTGQNRGYAFAAFTSI 222
Query: 159 EFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
E A++A+ +L+ ++K + ++S K+RL++G++PKN T+DE + V G+ +
Sbjct: 223 EGAREAVKQLNGHKIKDNWQLSVNVSVPKSRLYVGSIPKNKTKDEILEEFAKVEKGLLDV 282
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT-ISWADPKSTPDHS 276
+I ++ RNRGF+F+ + ++ A +++K+ + K+ + WADP PD S
Sbjct: 283 -IIYKTEDKMRNRGFAFLEFDSHKAAASAKRKLASGRIKVWNQINVNVDWADPVIEPD-S 340
Query: 277 AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
S+VK +Y++N+ T+ KIKE F ++GEV K +D+ F+H+ ER +A+
Sbjct: 341 DTMSKVKVVYIRNLSTETTEVKIKEDFGQYGEVEKA------KKMKDYCFVHFKERDAAV 394
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
KA+++ E +G +EV LAKP + K
Sbjct: 395 KAIEEMNGKEYEGTTIEVSLAKPPMENK 422
>gi|74228775|dbj|BAE21877.1| unnamed protein product [Mus musculus]
Length = 604
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 133 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 192
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 193 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 252
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 253 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 311
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 312 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 365
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 366 MNGKEIEGEEIEIVLAKPPDKKRKE 390
>gi|132626770|ref|NP_001006309.3| heterogeneous nuclear ribonucleoprotein R [Gallus gallus]
gi|326932873|ref|XP_003212536.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Meleagris gallopavo]
Length = 633
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 161/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F SK+ A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ + E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFNKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMNE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|149062249|gb|EDM12672.1| rCG47908 [Rattus norvegicus]
Length = 406
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 238
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 239 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 292
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 293 MNGKEIEGEEIEIVLAKPPDKKRKE 317
>gi|444512913|gb|ELV10212.1| APOBEC1 complementation factor [Tupaia chinensis]
Length = 598
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 55 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAK 113
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 114 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 173
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 174 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 232
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 233 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 286
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 287 KALNGKMLDGSPIEVTLAKP 306
>gi|73995985|ref|XP_861026.1| PREDICTED: APOBEC1 complementation factor isoform 3 [Canis lupus
familiaris]
Length = 582
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +++ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNRQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 DAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +RNRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKMLDGSPIEVTLAKP 303
>gi|73995983|ref|XP_534776.2| PREDICTED: APOBEC1 complementation factor isoform 1 [Canis lupus
familiaris]
Length = 590
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +++ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNRQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 DAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +RNRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKMLDGSPIEVTLAKP 303
>gi|338716787|ref|XP_003363516.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Equus
caballus]
Length = 589
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALHGKVLDGSPIEVTLAKP 303
>gi|410974963|ref|XP_003993908.1| PREDICTED: LOW QUALITY PROTEIN: APOBEC1 complementation factor
[Felis catus]
Length = 592
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 154/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE +G ++E+R+M D +G ++G+AFV+F +++
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKMGKIYEMRMMMDF-NGNNRGYAFVTFSNRQE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 109 AKDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGVVDVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ SRNRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKSRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++
Sbjct: 229 S-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSSREDAVE 281
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|327288394|ref|XP_003228911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Anolis
carolinensis]
Length = 632
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ + E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMNE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|338716785|ref|XP_001501741.3| PREDICTED: APOBEC1 complementation factor isoform 1 [Equus
caballus]
Length = 597
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 154/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGVVDVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++
Sbjct: 229 S-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVE 281
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 282 AMKALHGKVLDGSPIEVTLAKP 303
>gi|126328455|ref|XP_001366091.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Monodelphis
domestica]
Length = 633
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F K+ A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|410895527|ref|XP_003961251.1| PREDICTED: APOBEC1 complementation factor-like [Takifugu rubripes]
Length = 613
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 148/257 (57%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
GSE+F+G LP+D E++L LCE G ++EVR+M D SG ++G+AFV+F +K+ AK A+
Sbjct: 56 GSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDF-SGNNRGYAFVTFSNKQEAKAAM 114
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E + V GV + +
Sbjct: 115 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEIMCEMRKVTDGVLDVIVYPSAA 174
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ S+NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D A+ VK
Sbjct: 175 DKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVEVDEDTMAT-VKI 233
Query: 285 LYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E I++ F + G V +V RD+ F+H+ +R A+ A+
Sbjct: 234 LYVRNLMLQTTEETIEKEFNSLKQGAVERV------KKIRDYAFVHFTQREDAIHAMNAL 287
Query: 343 EKYEIDGQVLEVVLAKP 359
+DG +EV LAKP
Sbjct: 288 NGKVVDGSPIEVTLAKP 304
>gi|221129841|ref|XP_002156950.1| PREDICTED: APOBEC1 complementation factor-like [Hydra
magnipapillata]
Length = 598
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 148/261 (56%), Gaps = 12/261 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G LP+D E++L + E +G ++E+RLM D +G+++G+ FV + S A+
Sbjct: 84 PPRGCEVFVGKLPRDCYEDELVPVFEKVGTIYELRLMMDY-NGQNRGYGFVIYLSSRDAQ 142
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ L++ E+ K + I S RLFIG +PK +DE + I V V + +
Sbjct: 143 RAVRTLNNYEIRKSRLIGVCHSVDNCRLFIGGIPKKVKKDEILEEISKVTDSVVNVIVYP 202
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ S+NRGF+FV Y + A +R+K++N +L G+ + WA+P+ D Q
Sbjct: 203 SATDKSKNRGFAFVEYNCHRSAAMARRKLMNGKIQLWGHPIAVDWAEPEQDIDED-IMDQ 261
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSS---ALKA 338
VK LY++N+ NT+ E I+ LF++ EV +V +D+ F+H+ R AL++
Sbjct: 262 VKVLYIRNLQLNTTEETIENLFKKFAEVERV------KKIKDYCFVHFVTREGARLALES 315
Query: 339 VKDTEKYEIDGQVLEVVLAKP 359
VK IDG +EV LAKP
Sbjct: 316 VKANNGESIDGAKIEVTLAKP 336
>gi|350592917|ref|XP_001925737.4| PREDICTED: APOBEC1 complementation factor isoform 1 [Sus scrofa]
Length = 662
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 153/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H+ R A++
Sbjct: 229 S-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNREDAVE 281
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|449267775|gb|EMC78677.1| Heterogeneous nuclear ribonucleoprotein R [Columba livia]
Length = 633
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 161/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F SK+ A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ + E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFGKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMNE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|348575664|ref|XP_003473608.1| PREDICTED: APOBEC1 complementation factor-like [Cavia porcellus]
Length = 594
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 120/383 (31%), Positives = 192/383 (50%), Gaps = 23/383 (6%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKLE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++
Sbjct: 229 S-VKILYVRNLMLSTSEEIIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVE 281
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVG 397
A+K +DG +EV LAKP DK + + G T LP Y G Y
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGTMLP-GEYTYSLGHIYDPTT 339
Query: 398 TGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRRVDRSNG 457
T G P+ Y P +P + G++ + ++ P R ++ G
Sbjct: 340 TYLGA------PVFYA----PQAYAAIPSLHFPATKGHLSNRAIIRAPSVREIYMNVPVG 389
Query: 458 PGGRGGRGGSSGGDDGNRGRRYR 480
G G GG GR Y+
Sbjct: 390 AAGVRGLGGRGYLAYTGLGRGYQ 412
>gi|395521675|ref|XP_003764941.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sarcophilus
harrisii]
Length = 563
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F K+ A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|395820737|ref|XP_003783717.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Otolemur
garnettii]
Length = 592
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 152/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKLE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E + V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMRKVTEGVVDVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ S+NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++
Sbjct: 229 S-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRDDAIE 281
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|395820739|ref|XP_003783718.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Otolemur
garnettii]
Length = 584
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 151/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E + V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMRKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ S+NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRDDAIEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|8515877|gb|AAF76221.1|AF271789_1 APOBEC-1 complementation factor [Homo sapiens]
Length = 586
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 152/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRKDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|403260038|ref|XP_003922495.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Saimiri
boliviensis boliviensis]
Length = 593
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 153/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++
Sbjct: 229 S-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVE 281
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|332212196|ref|XP_003255205.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Nomascus
leucogenys]
Length = 587
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 152/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|449488926|ref|XP_004174439.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein R-like [Taeniopygia guttata]
Length = 517
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 161/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F SK+ A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ + E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFGKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMNE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>gi|296220667|ref|XP_002756404.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Callithrix
jacchus]
Length = 594
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 153/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++
Sbjct: 229 S-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVE 281
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|6996658|gb|AAF34824.1|AF209192_1 Apobec-1 complementation factor [Homo sapiens]
Length = 586
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 152/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRKDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|355562596|gb|EHH19190.1| hypothetical protein EGK_19855 [Macaca mulatta]
Length = 592
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 153/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++
Sbjct: 229 S-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVE 281
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|197099260|ref|NP_001127437.1| APOBEC1 complementation factor [Pongo abelii]
gi|75070678|sp|Q5R9H4.1|A1CF_PONAB RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|55729715|emb|CAH91586.1| hypothetical protein [Pongo abelii]
Length = 587
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 152/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|20357575|ref|NP_620310.1| APOBEC1 complementation factor isoform 2 [Homo sapiens]
gi|74761651|sp|Q9NQ94.1|A1CF_HUMAN RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|8574041|emb|CAB94754.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574518|gb|EAW54133.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|119574523|gb|EAW54138.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|120659916|gb|AAI30520.1| APOBEC1 complementation factor [Homo sapiens]
Length = 594
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 152/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|20357572|ref|NP_055391.2| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|311771764|ref|NP_001185747.1| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|8574043|emb|CAB94755.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574519|gb|EAW54134.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|119574521|gb|EAW54136.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|158257396|dbj|BAF84671.1| unnamed protein product [Homo sapiens]
Length = 586
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 152/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|296220673|ref|XP_002756407.1| PREDICTED: APOBEC1 complementation factor isoform 4 [Callithrix
jacchus]
Length = 560
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 153/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 24 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLE 82
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 83 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 142
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 143 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 202
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++
Sbjct: 203 S-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVE 255
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 256 AMKALNGKVLDGSPIEVTLAKP 277
>gi|397469479|ref|XP_003806379.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Pan paniscus]
Length = 594
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 152/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|126272659|ref|XP_001363608.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Monodelphis
domestica]
Length = 586
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 150/260 (57%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++EVR+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELVPLCEKIGKIYEVRMMMD-FNGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E +++ F + G V +V RD+ F+H+ R A+ A+
Sbjct: 230 VKILYVRNLMLSTSEETLEKEFNSIKPGSVERV------KKIRDYAFVHFNNRDDAVNAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|109089789|ref|XP_001100059.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Macaca
mulatta]
gi|402880832|ref|XP_003903993.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Papio anubis]
Length = 592
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 153/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKLE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++
Sbjct: 229 S-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVE 281
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|403260036|ref|XP_003922494.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Saimiri
boliviensis boliviensis]
Length = 559
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 153/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 24 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLE 82
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 83 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 142
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 143 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 202
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++
Sbjct: 203 S-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVE 255
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 256 AMKALNGKVLDGSPIEVTLAKP 277
>gi|297301400|ref|XP_001100328.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Macaca
mulatta]
gi|402880834|ref|XP_003903994.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Papio anubis]
Length = 558
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 153/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 24 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLE 82
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 83 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 142
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 143 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 202
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++
Sbjct: 203 S-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVE 255
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 256 AMKALNGKVLDGSPIEVTLAKP 277
>gi|168034648|ref|XP_001769824.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678933|gb|EDQ65386.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 281
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 154/268 (57%), Gaps = 15/268 (5%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
E+ KH +L EVF+GGL K+ +EE+L + +GDV EVRLMK+ ++G++KG+A
Sbjct: 11 ERRKHKKL--------EVFVGGLDKETTEEELESVFGRVGDVVEVRLMKNAQTGKNKGYA 62
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
F+ F S AK+A +L E++G++ SE + LF+GN+ K W ++ + ++
Sbjct: 63 FIRFASAAIAKRASHDLERVEIRGRSCGVLPSEENDTLFLGNISKLWKKETVLETLKKFA 122
Query: 212 -PGVETIELIKDPQNPSRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWAD 268
VE I L++DPQ NRGF+F+ + + A + R + +A F D + I+WA
Sbjct: 123 IENVEDITLMEDPQLEGVNRGFAFIEFNTHKEALNAFRRLQQADAVFGTD-RSAKIAWAQ 181
Query: 269 PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG--KSGKRDFGF 326
P + PD SQVK+++V +P K+KELF ++G V ++V+ + ++DFGF
Sbjct: 182 PLNEPDED-IMSQVKSVFVDGMPPTWDERKVKELFNKYGAVERIVLARNMLSAKRKDFGF 240
Query: 327 IHYAERSSALKAVKDTEKYEIDGQVLEV 354
++Y ER +AL + EI + ++V
Sbjct: 241 VNYVERDAALLCIDALNNTEISYEDIKV 268
>gi|126272657|ref|XP_001363520.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Monodelphis
domestica]
Length = 594
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 150/260 (57%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++EVR+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELVPLCEKIGKIYEVRMMMDF-NGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E +++ F + G V +V RD+ F+H+ R A+ A+
Sbjct: 230 VKILYVRNLMLSTSEETLEKEFNSIKPGSVERV------KKIRDYAFVHFNNRDDAVNAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|194383568|dbj|BAG64755.1| unnamed protein product [Homo sapiens]
Length = 587
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 152/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K AK
Sbjct: 45 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAK 103
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 104 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 163
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 164 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSS- 222
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 223 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 276
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 277 KALNGKVLDGSPIEVTLAKP 296
>gi|34365228|emb|CAE45953.1| hypothetical protein [Homo sapiens]
Length = 613
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 163/269 (60%), Gaps = 13/269 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 138 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 197
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTE----DEFRKVIEDVGPGVETI 217
+A+ S E++ GK + +S NRLF+G++PKN T+ +EF KV + G+ +
Sbjct: 198 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVT-GLTEGLVDV 256
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
L P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD
Sbjct: 257 ILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEV 316
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
A +VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+K
Sbjct: 317 MA-KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVK 369
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A+ + EI+G+ +E+VLAKP K+ E
Sbjct: 370 AMDEMNGKEIEGEEIEIVLAKPPDKKRKE 398
>gi|20357578|ref|NP_620311.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|311771768|ref|NP_001185749.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|119574520|gb|EAW54135.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|119574522|gb|EAW54137.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|219521544|gb|AAI44197.1| A1CF protein [Homo sapiens]
Length = 594
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 153/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 58 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVE 116
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 117 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 176
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 177 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMS 236
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++
Sbjct: 237 S-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVE 289
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 290 AMKALNGKVLDGSPIEVTLAKP 311
>gi|348524054|ref|XP_003449538.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Oreochromis
niloticus]
Length = 604
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 150/257 (58%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
GSE+F+G LP+D E++L LCE G ++EVR+M D +G ++G+AFV+F +K+ A+ A+
Sbjct: 56 GSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMD-FNGNNRGYAFVTFSNKQEARAAM 114
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 115 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTDGVVDVIVYPSAA 174
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ S+NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D A+ VK
Sbjct: 175 DKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVEVDEDTMAT-VKI 233
Query: 285 LYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E I++ F + G V +V RD+ F+H+ +R A+ A+K
Sbjct: 234 LYVRNLMLQTTEETIEKEFNSLKPGAVERV------KKIRDYAFVHFTQREDAINAMKAL 287
Query: 343 EKYEIDGQVLEVVLAKP 359
+DG +EV LAKP
Sbjct: 288 NGKVVDGSPIEVTLAKP 304
>gi|397469477|ref|XP_003806378.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Pan paniscus]
Length = 594
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 152/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K AK
Sbjct: 60 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAK 118
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 119 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 178
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 179 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSS- 237
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 238 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 291
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 292 KALNGKVLDGSPIEVTLAKP 311
>gi|348524056|ref|XP_003449539.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Oreochromis
niloticus]
Length = 612
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 150/257 (58%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
GSE+F+G LP+D E++L LCE G ++EVR+M D +G ++G+AFV+F +K+ A+ A+
Sbjct: 56 GSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDF-NGNNRGYAFVTFSNKQEARAAM 114
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 115 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTDGVVDVIVYPSAA 174
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ S+NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D A+ VK
Sbjct: 175 DKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVEVDEDTMAT-VKI 233
Query: 285 LYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E I++ F + G V +V RD+ F+H+ +R A+ A+K
Sbjct: 234 LYVRNLMLQTTEETIEKEFNSLKPGAVERV------KKIRDYAFVHFTQREDAINAMKAL 287
Query: 343 EKYEIDGQVLEVVLAKP 359
+DG +EV LAKP
Sbjct: 288 NGKVVDGSPIEVTLAKP 304
>gi|297282467|ref|XP_001111802.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 1
[Macaca mulatta]
Length = 636
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 163/269 (60%), Gaps = 13/269 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTE----DEFRKVIEDVGPGVETI 217
+A+ S E++ GK + +S NRLF+G++PKN T+ +EF KV + G+ +
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVT-GLTEGLVDV 279
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
L P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD
Sbjct: 280 ILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEV 339
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
A +VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+K
Sbjct: 340 MA-KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVK 392
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A+ + EI+G+ +E+VLAKP K+ E
Sbjct: 393 AMDEMNGKEIEGEEIEIVLAKPPDKKRKE 421
>gi|156151396|ref|NP_001095869.1| heterogeneous nuclear ribonucleoprotein R isoform 3 [Homo sapiens]
gi|297282469|ref|XP_002802270.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 2
[Macaca mulatta]
gi|380784783|gb|AFE64267.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
Length = 535
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 163/269 (60%), Gaps = 13/269 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTE----DEFRKVIEDVGPGVETI 217
+A+ S E++ GK + +S NRLF+G++PKN T+ +EF KV + G+ +
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVT-GLTEGLVDV 178
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
L P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD
Sbjct: 179 ILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEV 238
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
A +VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+K
Sbjct: 239 MA-KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVK 291
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A+ + EI+G+ +E+VLAKP K+ E
Sbjct: 292 AMDEMNGKEIEGEEIEIVLAKPPDKKRKE 320
>gi|311771766|ref|NP_001185748.1| APOBEC1 complementation factor isoform 4 [Homo sapiens]
Length = 602
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 153/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 58 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKVE 116
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 117 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 176
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 177 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMS 236
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++
Sbjct: 237 S-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVE 289
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 290 AMKALNGKVLDGSPIEVTLAKP 311
>gi|156151394|ref|NP_001095868.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Homo sapiens]
gi|12655185|gb|AAH01449.1| HNRPR protein [Homo sapiens]
gi|123982706|gb|ABM83094.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|123997373|gb|ABM86288.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|383408163|gb|AFH27295.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|384939484|gb|AFI33347.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|410262102|gb|JAA19017.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301028|gb|JAA29114.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350927|gb|JAA42067.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 636
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 163/269 (60%), Gaps = 13/269 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTE----DEFRKVIEDVGPGVETI 217
+A+ S E++ GK + +S NRLF+G++PKN T+ +EF KV + G+ +
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVT-GLTEGLVDV 279
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
L P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD
Sbjct: 280 ILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEV 339
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
A +VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+K
Sbjct: 340 MA-KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVK 392
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A+ + EI+G+ +E+VLAKP K+ E
Sbjct: 393 AMDEMNGKEIEGEEIEIVLAKPPDKKRKE 421
>gi|324504723|gb|ADY42035.1| Heterogeneous nuclear ribonucleoprotein R [Ascaris suum]
Length = 619
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 150/262 (57%), Gaps = 10/262 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E++IG +P + E+ L L E +G ++++RLM D +G+++G+AF++F K FA +A
Sbjct: 197 GHEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAA 256
Query: 166 DELHSKE-LKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ E L GK ++ ++S RLFIGN+PK+ +++E ++ GV + P
Sbjct: 257 KKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVVDCIIYTSPD 316
Query: 225 NPS--RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
+ +NRGF F+ + ++ A +++K+ + + + WA+ + PD S+V
Sbjct: 317 AGANRKNRGFCFLDFCDHKAASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEE-TMSKV 375
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
K LYV+N+ + + E++KE+F HGEV + RD+ FIH+ ER ALKA++
Sbjct: 376 KVLYVRNLKEAVTEEQLKEMFAAHGEVERA------KKIRDYAFIHFKEREPALKAMEAL 429
Query: 343 EKYEIDGQVLEVVLAKPQTDKK 364
++G +E+ LAKPQ DKK
Sbjct: 430 NGTVLEGIAIEISLAKPQGDKK 451
>gi|8515879|gb|AAF76222.1|AF271790_1 APOBEC-1 complementation factor related protein [Homo sapiens]
Length = 569
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 153/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 33 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVE 91
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 92 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 151
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 152 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMS 211
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++
Sbjct: 212 S-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRKDAVE 264
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 265 AMKALNGKVLDGSPIEVTLAKP 286
>gi|74141454|dbj|BAB27533.3| unnamed protein product [Mus musculus]
Length = 381
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 157/258 (60%), Gaps = 8/258 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 130 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 189
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 190 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 249
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 250 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 308
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 309 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 362
Query: 342 TEKYEIDGQVLEVVLAKP 359
EI+G+ +E+VLAKP
Sbjct: 363 MNGKEIEGEEIEIVLAKP 380
>gi|149610011|ref|XP_001505728.1| PREDICTED: RNA-binding protein 47 isoform 1 [Ornithorhynchus
anatinus]
Length = 591
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 149/260 (57%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV++ K AK
Sbjct: 72 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVTYTHKHEAK 130
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 131 RAVRELNNYEVRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 190
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 191 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 249
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A++A+
Sbjct: 250 VKILYVRNLMIETTEEAIKKSFGQFNPGCVERV------KKIRDYAFVHFVSREDAVRAM 303
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 304 NSLNGTELEGSCLEVTLAKP 323
>gi|68369598|ref|XP_707799.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Danio rerio]
Length = 586
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 150/260 (57%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P GSE+F+G LP+D E++L LCE G ++EVR+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMD-FNGNNRGYAFVTFSTKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVLDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y + A +R+K+L +L G+ + WA+P+ D A+
Sbjct: 171 SAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMAT- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ E I++ F + G V +V RD+ F+H+++R A+ A+
Sbjct: 230 VKILYVRNLMLPTTEETIEKEFNSIKPGAVERV------KKIRDYAFVHFSQREDAINAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
IDG +EV LAKP
Sbjct: 284 NALNGKVIDGSPIEVTLAKP 303
>gi|68369596|ref|XP_685178.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Danio rerio]
Length = 594
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 150/260 (57%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P GSE+F+G LP+D E++L LCE G ++EVR+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDF-NGNNRGYAFVTFSTKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVLDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y + A +R+K+L +L G+ + WA+P+ D A+
Sbjct: 171 SAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMAT- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ E I++ F + G V +V RD+ F+H+++R A+ A+
Sbjct: 230 VKILYVRNLMLPTTEETIEKEFNSIKPGAVERV------KKIRDYAFVHFSQREDAINAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
IDG +EV LAKP
Sbjct: 284 NALNGKVIDGSPIEVTLAKP 303
>gi|356561166|ref|XP_003548856.1| PREDICTED: uncharacterized protein LOC100819035 [Glycine max]
Length = 953
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 150/245 (61%), Gaps = 6/245 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+F+GGL +DA+EEDLR + + IG++ EVRL K+ + ++KG+AFV F +KE AKKA+ E
Sbjct: 459 EIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFANKENAKKALSE 518
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
+ + + GK + SE + LF+GN+ WT++ ++ ++D G GVE+I L+ D Q+
Sbjct: 519 MKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVESITLVPDVQHE 578
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+RGF+F+ + + +A + R + + F T +++A+P PD A QVK+
Sbjct: 579 GLSRGFAFLEFSCHADAMLAFKRLQKPDVIFGHAERTAKVAFAEPIHEPDPEIMA-QVKS 637
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDT 342
+++ +P + + ++ELF+ +GE+ ++V+ S ++D+GF+ ++ +A+ V
Sbjct: 638 VFINGLPPHWDEDHVRELFKAYGEIVRIVLARNMSSAKRKDYGFVDFSTHEAAVACVDGV 697
Query: 343 EKYEI 347
K E+
Sbjct: 698 NKSEL 702
>gi|345326219|ref|XP_001506578.2| PREDICTED: APOBEC1 complementation factor [Ornithorhynchus
anatinus]
Length = 655
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/284 (34%), Positives = 158/284 (55%), Gaps = 12/284 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+F+G LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 50 AAPERGCEIFVGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E + V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMRKVTEGVVEVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I+ F + G V +V RD+ F+H+ R A+
Sbjct: 229 S-VKILYVRNLMLSTSEETIEREFNNIKPGAVERV------KKIRDYAFVHFNNREDAVG 281
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
A+K +DG +EV LAKP DK + + G T LP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGTSLP 324
>gi|432844963|ref|XP_004065796.1| PREDICTED: RNA-binding protein 47-like [Oryzias latipes]
Length = 602
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 156/280 (55%), Gaps = 17/280 (6%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G E+F+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 79 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTEKHEAK 137
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + + V GV + +
Sbjct: 138 RAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVLDVIVYA 197
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 198 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 256
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ E I+++F + G V +V RD+ F+H+ R A+ A+
Sbjct: 257 VKILYVRNLMMETNEETIRQIFSQWNPGCVERV------KKIRDYAFVHFTSRDDAVLAM 310
Query: 340 KDTEKYEIDGQVLEVVLAKP------QTDKKTEGTFPYSP 373
+ EI+G +EV LAKP K ++G P +P
Sbjct: 311 DNLNGTEIEGSCIEVTLAKPVDKEQYSRQKASKGAIPATP 350
>gi|357114605|ref|XP_003559089.1| PREDICTED: uncharacterized protein LOC100837927 [Brachypodium
distachyon]
Length = 1019
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 161/289 (55%), Gaps = 14/289 (4%)
Query: 64 QSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDL 123
Q+A + + D VEE E+ S + +L E+F+GGL +DA EED+
Sbjct: 476 QAAAQDTGEKDRARVEEHERMVMSDMAKNRQLKKEL--------EIFVGGLNRDAVEEDI 527
Query: 124 RDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183
R + +GDV +VRL KD + +KGFAFV F +KE +A+ E+ + ++GK + S
Sbjct: 528 RSVFGQVGDVVDVRLHKDLLTNRNKGFAFVKFATKEQVSRALAEMKNPMIRGKRCGIAAS 587
Query: 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVLY--YNN 240
E + LF+GN+ WT++ +K + D G GV+++ L+ D QN ++RGF+F+ + + +
Sbjct: 588 EDNDTLFLGNICNTWTKEAIKKRLLDYGIEGVQSLTLVPDTQNEGQSRGFAFLEFSCHAD 647
Query: 241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300
A + R + +A F T +++A+P PD A QVK++++ +P +++K
Sbjct: 648 AMLAFKRLQQPDAMFGHPERTAKVAFAEPIKEPDAEVMA-QVKSVFIDGLPPYWDEDRVK 706
Query: 301 ELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEI 347
+ F+ +G + +VV+ S + DFGF++++ +AL ++ T E+
Sbjct: 707 DRFKAYGVIERVVLASNMSSAKRNDFGFVNFSTHEAALACIEATNNTEL 755
>gi|363735088|ref|XP_421561.3| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Gallus
gallus]
Length = 589
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 151/257 (58%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ A+ AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEARNAI 113
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVVDVIVYPSAA 173
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S VK
Sbjct: 174 DKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VKI 232
Query: 285 LYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ +T+ E I++ F + G V +V RD+ F+H+ +R A+ A+K
Sbjct: 233 LYVRNLMLSTTEETIEKEFNNIKQGAVERV------KKIRDYAFVHFNKREDAVHAMKAL 286
Query: 343 EKYEIDGQVLEVVLAKP 359
+DG +EV LAKP
Sbjct: 287 NGKVLDGSPIEVTLAKP 303
>gi|363735090|ref|XP_003641506.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Gallus
gallus]
Length = 581
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 151/257 (58%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ A+ AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEARNAI 113
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVVDVIVYPSAA 173
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S VK
Sbjct: 174 DKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VKI 232
Query: 285 LYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ +T+ E I++ F + G V +V RD+ F+H+ +R A+ A+K
Sbjct: 233 LYVRNLMLSTTEETIEKEFNNIKQGAVERV------KKIRDYAFVHFNKREDAVHAMKAL 286
Query: 343 EKYEIDGQVLEVVLAKP 359
+DG +EV LAKP
Sbjct: 287 NGKVLDGSPIEVTLAKP 303
>gi|149610013|ref|XP_001505770.1| PREDICTED: RNA-binding protein 47 isoform 2 [Ornithorhynchus
anatinus]
Length = 522
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 149/260 (57%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV++ K AK
Sbjct: 72 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVTYTHKHEAK 130
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 131 RAVRELNNYEVRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 190
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 191 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 249
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A++A+
Sbjct: 250 VKILYVRNLMIETTEEAIKKSFGQFNPGCVERV------KKIRDYAFVHFVSREDAVRAM 303
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 304 NSLNGTELEGSCLEVTLAKP 323
>gi|260812205|ref|XP_002600811.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
gi|229286101|gb|EEN56823.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
Length = 531
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 151/262 (57%), Gaps = 14/262 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +P+D E++L + E IG ++E+RLM D +G ++G+AFV + S++ AK
Sbjct: 55 PSRGCEVFVGKIPRDLFEDELVPVFESIGKIYELRLMMDF-NGNNRGYAFVMYTSRDDAK 113
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ +L++ E+ KG+ + S RLF+G +PKN + E + + V GV + +
Sbjct: 114 RAVKQLNNYEIRKGRLLGVCPSVDNCRLFVGGIPKNKKKHEILEEMSKVTEGVVDVIVYP 173
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D S
Sbjct: 174 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEVEVDEDIMKS- 232
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK----RDFGFIHYAERSSALK 337
VK LYV+N+ T+ E +KE F+ V+ PG + RD+ F+H+ R A+K
Sbjct: 233 VKVLYVRNLLLTTTEESLKESFEN-------VVSPGSVERVKKIRDYAFVHFKTREEAVK 285
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+ T IDG +EV LAKP
Sbjct: 286 AMNATNGQLIDGCQVEVTLAKP 307
>gi|356502130|ref|XP_003519874.1| PREDICTED: uncharacterized protein LOC100784338 [Glycine max]
Length = 884
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 157/278 (56%), Gaps = 15/278 (5%)
Query: 75 TPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF 134
T +EEE + ++ K K E+F+GGL +DA+EEDLR + + IG++
Sbjct: 366 TSALEEEHRELEAIANQRKIKKEH---------EIFVGGLDRDATEEDLRKVFQRIGEIV 416
Query: 135 EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV 194
EVRL K+ + ++KG+AFV F KE AKKA+ E+ + + GK + SE + LF+GN+
Sbjct: 417 EVRLHKNSSTNKNKGYAFVKFSDKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNI 476
Query: 195 PKNWTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVLY--YNNACADYSRQKML 251
WT++ ++ ++D G GVE I L+ D Q+ + GF+F+ + + +A Y R +
Sbjct: 477 CNTWTKEAIKQKLKDYGIEGVENIMLVPDVQHEGLSWGFAFLEFSCHADAMLAYKRLQKP 536
Query: 252 NANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK 311
+ F T +++A+P PD A QVK++++ +P + + ++ELF+ +GEV +
Sbjct: 537 DVMFGHAERTAKVAFAEPIREPDPEIMA-QVKSVFINGLPPHWDEDHVRELFKSYGEVVR 595
Query: 312 VVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEI 347
+V+ S ++D+GF+ ++ +A+ V K E+
Sbjct: 596 IVLARNMSSAKRKDYGFVDFSTHEAAVACVDGVNKSEL 633
>gi|224049976|ref|XP_002187774.1| PREDICTED: RNA-binding protein 47 isoform 1 [Taeniopygia guttata]
Length = 594
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 149/260 (57%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ + IK++F + G V +V RD+ F+H+ R A+ A+
Sbjct: 245 VKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFTTREDAIHAM 298
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
+ E++G LEV LAKP
Sbjct: 299 NNLNGVELEGSCLEVTLAKP 318
>gi|326919263|ref|XP_003205901.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Meleagris
gallopavo]
Length = 598
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 149/260 (57%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ + IK++F + G V +V RD+ F+H+ R A+ A+
Sbjct: 245 VKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFTTREDAIHAM 298
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
+ E++G LEV LAKP
Sbjct: 299 NNLNGVELEGSCLEVTLAKP 318
>gi|449280244|gb|EMC87583.1| APOBEC1 complementation factor [Columba livia]
Length = 589
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 152/257 (59%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEAKNAI 113
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVVDVIVYPSAA 173
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S VK
Sbjct: 174 DKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VKI 232
Query: 285 LYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ +T+ E I++ F + G V +V RD+ F+H+ +R A++A+K
Sbjct: 233 LYVRNLMLSTTEETIEKEFNNIKPGAVERV------KKIRDYAFVHFNKREDAVEAMKAL 286
Query: 343 EKYEIDGQVLEVVLAKP 359
+DG +EV LAKP
Sbjct: 287 NGKVLDGSPIEVTLAKP 303
>gi|363733760|ref|XP_003641292.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gallus gallus]
Length = 597
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 149/260 (57%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ + IK++F + G V +V RD+ F+H+ R A+ A+
Sbjct: 245 VKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFTTREDAIHAM 298
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
+ E++G LEV LAKP
Sbjct: 299 NNLNGVELEGSCLEVTLAKP 318
>gi|291404365|ref|XP_002718412.1| PREDICTED: apobec-1 complementation factor [Oryctolagus cuniculus]
Length = 596
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 189/386 (48%), Gaps = 33/386 (8%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L +CE IG ++E+R+M D +G ++G+AFV+F +K AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPICEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED-TMSL 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNVKPGAVERV------KKIRDYAFVHFSHREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTG 399
K +DG +EV LAKP DK + + G GG A G
Sbjct: 284 KALNGKVLDGSPIEVTLAKP-VDKDSYVRYT------------RGTGGRATMLQGDYTYS 330
Query: 400 FG-----VAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRRVDR 454
G AA P+ Y P +P + G++ + ++ P R ++
Sbjct: 331 LGHVYDPTAAYLGAPVFYA----PQAYAAIPSLHFPATKGHLSNRAIIRAPSVREIYMNV 386
Query: 455 SNGPGGRGGRGGSSGGDDGNRGRRYR 480
G G G GG GR Y+
Sbjct: 387 PVGAAGVRGLGGRGYLAYTGLGRGYQ 412
>gi|348536212|ref|XP_003455591.1| PREDICTED: probable RNA-binding protein 46-like [Oreochromis
niloticus]
Length = 574
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/257 (36%), Positives = 149/257 (57%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E+DL L E +G ++E RLM + SGE++G+AFV + +E A++AI
Sbjct: 76 GCEVFVGKIPRDMYEDDLVPLFEKVGRIYEFRLMMEF-SGENRGYAFVMYTDREAAQRAI 134
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
L + E++ GK I +S RLFIG++PK+ +DE + ++ V GV +
Sbjct: 135 QMLDNYEVRPGKFIGVCVSLDNCRLFIGSIPKDKRKDEVIEEMKKVTDGVVDAIVYPSTT 194
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ ++NRGF+FV Y ++ A +R+K++ F+L G++ + WA+P+ D +V+
Sbjct: 195 DKNKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHSIQVDWAEPEKDVDEE-VMQRVRV 253
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ TS E +++ F R G V +V D+ FIHY RS AL A+
Sbjct: 254 LYVRNLMLETSEETLRQEFSRFKPGCVERV------KKLSDYAFIHYRSRSDALTALSLM 307
Query: 343 EKYEIDGQVLEVVLAKP 359
IDG +EV LAKP
Sbjct: 308 NGAHIDGAAVEVTLAKP 324
>gi|348529370|ref|XP_003452186.1| PREDICTED: RNA-binding protein 47-like [Oreochromis niloticus]
Length = 607
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 149/260 (57%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G E+F+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 81 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTEKHEAK 139
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + + V GV + +
Sbjct: 140 RAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVLDVIVYA 199
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 200 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 258
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ TS E I+++F + G V +V RD+ F+H+ R A+ A+
Sbjct: 259 VKILYVRNLMMETSEEAIRQIFSQFNPGCVERV------KKIRDYAFVHFTSRDDAVLAM 312
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
+ E++G +EV LAKP
Sbjct: 313 DNLNGTEVEGSCIEVTLAKP 332
>gi|357617562|gb|EHJ70861.1| hypothetical protein KGM_04943 [Danaus plexippus]
Length = 668
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 157/312 (50%), Gaps = 60/312 (19%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF G +PKD E++L L E G ++++RLM D SG ++G+AFV+F ++E ++A+
Sbjct: 164 GCEVFCGKIPKDMYEDELIPLFESCGTIWDLRLMMDPMSGANRGYAFVTFTTREATQRAV 223
Query: 166 DE----------------------------------------------------LHSKEL 173
E L + E+
Sbjct: 224 QEHVINIPIDFGHKYAECDVATARRPAPGAAPRVSMAGVPTVITDLVYMCNVTPLDNHEI 283
Query: 174 K-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGF 232
K GKT+R +S RLF+GN+PK+ ++E + + G+ + + P + +NRGF
Sbjct: 284 KPGKTLRIKISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLVEVIIYSSPDDKKKNRGF 343
Query: 233 SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPD 292
F+ Y ++ A +++++ K+ G + WADP+ PD S+VK LYV+N+
Sbjct: 344 CFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMSKVKVLYVRNLTQ 402
Query: 293 NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352
+ E +KE F+R+G V +V +D+ F+H+ +R A+KA+++ + E+ G L
Sbjct: 403 EITEEALKEEFERYGNVERV------KKIKDYAFVHFEDRDCAVKAMQEIDGKELGGARL 456
Query: 353 EVVLAKPQTDKK 364
EV LAKP +DKK
Sbjct: 457 EVSLAKPPSDKK 468
>gi|397478945|ref|XP_003810794.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
paniscus]
Length = 578
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 157/260 (60%), Gaps = 8/260 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+VF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A++A+
Sbjct: 111 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 170
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 171 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 230
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 231 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLF 289
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ + E
Sbjct: 290 VRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGKE 343
Query: 347 IDGQVLEVVLAKPQTDKKTE 366
I+G+ +E+VLAKP K+ E
Sbjct: 344 IEGEEIEIVLAKPPDKKRKE 363
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 23/183 (12%)
Query: 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
E K ++F+G +P++ EDE + E GP + + L+ DP + +NRG++F+ + A
Sbjct: 107 EAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLS-GQNRGYAFITFCGKEAA 164
Query: 244 DYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKEL 302
+ + + + + IS A+ + L+V +IP N + E I E
Sbjct: 165 QEAVKLCDSYEIRPGKHLGVCISVANNR--------------LFVGSIPKNKTKENILEE 210
Query: 303 FQRHGE-VTKVVM---PPGKSGKRDFGFIHYAERSSALKAVKD--TEKYEIDGQVLEVVL 356
F + E + V++ P K R F F+ Y + SA +A + + K ++ G V+ V
Sbjct: 211 FSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEW 270
Query: 357 AKP 359
A P
Sbjct: 271 ADP 273
>gi|327273505|ref|XP_003221521.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 47-like [Anolis
carolinensis]
Length = 603
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 149/260 (57%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 69 PPRGCEVFVGKIPRDVYEDELVPVFETAGRIYEMRLMMDFD-GKNRGYAFVMYTQKYEAK 127
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 128 RAVKELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 187
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 188 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 246
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ + IK++F + G V +V RD+ F+H+ R A++A+
Sbjct: 247 VKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFTSREDAVQAM 300
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
+ E++G LEV LAKP
Sbjct: 301 NNLNNTELEGSCLEVTLAKP 320
>gi|118090545|ref|XP_001232620.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gallus gallus]
Length = 528
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 149/260 (57%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ + IK++F + G V +V RD+ F+H+ R A+ A+
Sbjct: 245 VKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFTTREDAIHAM 298
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
+ E++G LEV LAKP
Sbjct: 299 NNLNGVELEGSCLEVTLAKP 318
>gi|326919265|ref|XP_003205902.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Meleagris
gallopavo]
Length = 529
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 149/260 (57%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ + IK++F + G V +V RD+ F+H+ R A+ A+
Sbjct: 245 VKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFTTREDAIHAM 298
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
+ E++G LEV LAKP
Sbjct: 299 NNLNGVELEGSCLEVTLAKP 318
>gi|449504773|ref|XP_002187149.2| PREDICTED: APOBEC1 complementation factor [Taeniopygia guttata]
Length = 581
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 151/257 (58%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAI 113
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 114 KTLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVVDVIVYPSAA 173
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S VK
Sbjct: 174 DKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VKI 232
Query: 285 LYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ +T+ E I++ F + G V +V RD+ F+H+ +R A++A+K
Sbjct: 233 LYVRNLMLSTTEETIEKEFNSIKPGAVERV------KKIRDYAFVHFNKREHAVEAMKAL 286
Query: 343 EKYEIDGQVLEVVLAKP 359
+DG +EV LAKP
Sbjct: 287 NGKVLDGSPIEVTLAKP 303
>gi|324502274|gb|ADY41001.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324504680|gb|ADY42019.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508493|gb|ADY43584.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508971|gb|ADY43783.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 621
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 149/262 (56%), Gaps = 10/262 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E++IG +P + E+ L L E +G ++++RLM D +G+++G+AF++F K FA +A
Sbjct: 197 GHEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAA 256
Query: 166 DELHSKE-LKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ E L GK ++ ++S RLFIGN+PK+ +++E ++ GV + P
Sbjct: 257 KKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 316
Query: 225 --NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
+NRGF F+ + ++ A +++K+ + + WA+ + PD A +V
Sbjct: 317 AGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMA-KV 375
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
K LYV+N+ + + E++KE+F HGEV V +D+ FIH+ ER A+KA++
Sbjct: 376 KVLYVRNLKEAVTEEQLKEMFSAHGEVDHV------KKIKDYAFIHFNEREPAVKAMEAL 429
Query: 343 EKYEIDGQVLEVVLAKPQTDKK 364
++G +E+ LAKPQ+DKK
Sbjct: 430 NGTVLEGVPIEISLAKPQSDKK 451
>gi|395542863|ref|XP_003773344.1| PREDICTED: RNA-binding protein 47 isoform 1 [Sarcophilus harrisii]
Length = 590
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 147/260 (56%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTHKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A+ A+
Sbjct: 245 VKILYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSRDDAVHAM 298
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 299 NSLNGTELEGSCLEVTLAKP 318
>gi|432926030|ref|XP_004080795.1| PREDICTED: APOBEC1 complementation factor-like [Oryzias latipes]
Length = 611
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 118/376 (31%), Positives = 188/376 (50%), Gaps = 18/376 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
GSE+F+G LP+D E++L LCE G ++EVR+M D +G ++G+AFV+F +K+ AK A+
Sbjct: 56 GSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDF-NGNNRGYAFVTFSNKQEAKTAM 114
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK DE ++ V GV + +
Sbjct: 115 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKIKKRDEILTEMKKVTDGVVDVIVYPSAA 174
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ S+NRGF+FV Y ++ A +R+K+L +L G + WA+P+ D A+ VK
Sbjct: 175 DKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGYPIAVDWAEPEVEVDDDTMAT-VKI 233
Query: 285 LYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E I+ F + G V +V RD+ F+H+ +R A+ A+
Sbjct: 234 LYVRNLMLQTTEETIEREFNSLKPGAVERV------KKIRDYAFVHFCQREDAINAMNAL 287
Query: 343 EKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFA-GTPYGSVGTGFG 401
++G +EV LAKP DK + + G + L Y + G Y G
Sbjct: 288 NGKLVEGSPIEVTLAKP-VDKDSYVRYTRGTGGRGSSLLQTDYTAYTLGQVYDPSAAYLG 346
Query: 402 VAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGV-QMPPPRPRRVDRSNGPGG 460
A F P Y +P+ + P G G +++ P V ++ P G GG
Sbjct: 347 -APVFYAPQAY--TALPNQIRFPAAKAPVGGRG-LIRSPSVREIYMTVPVGAAGVRGLGG 402
Query: 461 RGGRGGSSGGDDGNRG 476
RG S+G RG
Sbjct: 403 RGYLAYSTGAGALGRG 418
>gi|324505135|gb|ADY42212.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 609
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 149/262 (56%), Gaps = 10/262 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E++IG +P + E+ L L E +G ++++RLM D +G+++G+AF++F K FA +A
Sbjct: 185 GHEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAA 244
Query: 166 DELHSKE-LKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ E L GK ++ ++S RLFIGN+PK+ +++E ++ GV + P
Sbjct: 245 KKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 304
Query: 225 --NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
+NRGF F+ + ++ A +++K+ + + WA+ + PD A +V
Sbjct: 305 AGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMA-KV 363
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
K LYV+N+ + + E++KE+F HGEV V +D+ FIH+ ER A+KA++
Sbjct: 364 KVLYVRNLKEAVTEEQLKEMFSAHGEVDHV------KKIKDYAFIHFNEREPAVKAMEAL 417
Query: 343 EKYEIDGQVLEVVLAKPQTDKK 364
++G +E+ LAKPQ+DKK
Sbjct: 418 NGTVLEGVPIEISLAKPQSDKK 439
>gi|324511732|gb|ADY44878.1| Heterogeneous nuclear ribonucleoprotein Q, partial [Ascaris suum]
Length = 561
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 149/262 (56%), Gaps = 10/262 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E++IG +P + E+ L L E +G ++++RLM D +G+++G+AF++F K FA +A
Sbjct: 197 GHEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAA 256
Query: 166 DELHSKE-LKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ E L GK ++ ++S RLFIGN+PK+ +++E ++ GV + P
Sbjct: 257 KKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 316
Query: 225 --NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
+NRGF F+ + ++ A +++K+ + + WA+ + PD A +V
Sbjct: 317 AGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMA-KV 375
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
K LYV+N+ + + E++KE+F HGEV V +D+ FIH+ ER A+KA++
Sbjct: 376 KVLYVRNLKEAVTEEQLKEMFSAHGEVDHV------KKIKDYAFIHFNEREPAVKAMEAL 429
Query: 343 EKYEIDGQVLEVVLAKPQTDKK 364
++G +E+ LAKPQ+DKK
Sbjct: 430 NGTVLEGVPIEISLAKPQSDKK 451
>gi|395501464|ref|XP_003755115.1| PREDICTED: APOBEC1 complementation factor [Sarcophilus harrisii]
Length = 593
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 150/262 (57%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE G ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKFGKIYEMRMMMDF-NGNNRGYAFVTFSNKQE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCPSVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A R+K+L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H+ R A+
Sbjct: 229 S-VKILYVRNLMLSTSEETIEKEFDSIKPGSVERV------KKIRDYAFVHFNNREDAVN 281
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|213983189|ref|NP_001135499.1| RNA binding motif protein 47 [Xenopus (Silurana) tropicalis]
gi|195539941|gb|AAI67901.1| Unknown (protein for MGC:135580) [Xenopus (Silurana) tropicalis]
Length = 412
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 150/260 (57%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E G +FE+RLM D + G+++G+AFV F K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESAGRIFEMRLMMDFD-GKNRGYAFVMFTKKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 QAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ TS + IK++F + G V +V RD+ F+H++ R A++++
Sbjct: 245 VKILYVRNLMIETSEDTIKKIFGQFNPGCVERV------KKIRDYAFVHFSSREDAVQSM 298
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
+ E++G +EV LAKP
Sbjct: 299 RKLNGTELEGSCIEVTLAKP 318
>gi|126331699|ref|XP_001365552.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 592
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 147/260 (56%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTHKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A+ A+
Sbjct: 245 VKILYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAM 298
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 299 NSLNGTELEGSCLEVTLAKP 318
>gi|73950238|ref|XP_866575.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 8
[Canis lupus familiaris]
gi|296207006|ref|XP_002750460.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Callithrix jacchus]
gi|297282471|ref|XP_002802271.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 3
[Macaca mulatta]
gi|332244974|ref|XP_003271638.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Nomascus leucogenys]
gi|332807933|ref|XP_003307912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
troglodytes]
gi|402853338|ref|XP_003891353.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Papio anubis]
gi|426328277|ref|XP_004024926.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Gorilla gorilla gorilla]
gi|119615446|gb|EAW95040.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Homo
sapiens]
gi|194390156|dbj|BAG61840.1| unnamed protein product [Homo sapiens]
Length = 494
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 157/260 (60%), Gaps = 8/260 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+VF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A++A+
Sbjct: 27 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 86
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 87 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 146
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 147 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLF 205
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ + E
Sbjct: 206 VRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGKE 259
Query: 347 IDGQVLEVVLAKPQTDKKTE 366
I+G+ +E+VLAKP K+ E
Sbjct: 260 IEGEEIEIVLAKPPDKKRKE 279
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 23/183 (12%)
Query: 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
E K ++F+G +P++ EDE + E GP + + L+ DP + +NRG++F+ + A
Sbjct: 23 EAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLS-GQNRGYAFITFCGKEAA 80
Query: 244 DYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKEL 302
+ + + + + IS A+ + L+V +IP N + E I E
Sbjct: 81 QEAVKLCDSYEIRPGKHLGVCISVANNR--------------LFVGSIPKNKTKENILEE 126
Query: 303 FQRHGE-VTKVVM---PPGKSGKRDFGFIHYAERSSALKAVKD--TEKYEIDGQVLEVVL 356
F + E + V++ P K R F F+ Y + SA +A + + K ++ G V+ V
Sbjct: 127 FSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEW 186
Query: 357 AKP 359
A P
Sbjct: 187 ADP 189
>gi|395821031|ref|XP_003783853.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Otolemur garnettii]
Length = 595
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 157/260 (60%), Gaps = 8/260 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+VF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A++A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLF 306
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ + E
Sbjct: 307 VRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGKE 360
Query: 347 IDGQVLEVVLAKPQTDKKTE 366
I+G+ +E+VLAKP K+ E
Sbjct: 361 IEGEEIEIVLAKPPDKKRKE 380
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 136/310 (43%), Gaps = 39/310 (12%)
Query: 68 ANRNDDDTPHVEEEEKP--TASVGEDEKDKHAQLLALPPNGSE----VFIGGLPK--DAS 119
AN+ + + ++EEE+P T+SV E K LP +E +F GL D
Sbjct: 2 ANQVNGNAVQLKEEEEPMDTSSVTHTEHYKTLIEAGLPQKVAERLDEIFQTGLVAYVDLD 61
Query: 120 EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179
E + L E + L + KES + V +S F + +E +G ++
Sbjct: 62 ERAIDALREFNEEGALSVLQQFKESD----LSHVQNKSA-FLCGVMKTYRQREKQGSKVQ 116
Query: 180 CSLS---ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVL 236
S E K ++F+G +P++ EDE + E GP + + L+ DP + +NRG++F+
Sbjct: 117 ESTKGPDEAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLS-GQNRGYAFIT 174
Query: 237 YYNNACADYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAAASQVKALYVKNIPDNTS 295
+ A + + + + + IS A+ + L+V +IP N +
Sbjct: 175 FCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNR--------------LFVGSIPKNKT 220
Query: 296 TEKIKELFQRHGE-VTKVVM---PPGKSGKRDFGFIHYAERSSALKAVKD--TEKYEIDG 349
E I E F + E + V++ P K R F F+ Y + SA +A + + K ++ G
Sbjct: 221 KENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG 280
Query: 350 QVLEVVLAKP 359
V+ V A P
Sbjct: 281 NVVTVEWADP 290
>gi|426221980|ref|XP_004005183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Ovis aries]
Length = 595
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 157/260 (60%), Gaps = 8/260 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+VF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A++A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLF 306
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ + E
Sbjct: 307 VRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGKE 360
Query: 347 IDGQVLEVVLAKPQTDKKTE 366
I+G+ +E+VLAKP K+ E
Sbjct: 361 IEGEEIEIVLAKPPDKKRKE 380
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 136/310 (43%), Gaps = 39/310 (12%)
Query: 68 ANRNDDDTPHVEEEEKP--TASVGEDEKDKHAQLLALPPNGSE----VFIGGLPK--DAS 119
AN+ + + ++EEE+P T+SV E K LP +E +F GL D
Sbjct: 2 ANQVNGNAVQLKEEEEPMDTSSVNHTEHYKTLIEAGLPQKVAERLDEIFQTGLVAYVDLD 61
Query: 120 EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179
E + L E + L + KES + V +S F + +E +G ++
Sbjct: 62 ERAIDALREFNEEGALSVLQQFKESD----LSHVQNKSA-FLCGVMKTYRQREKQGSKVQ 116
Query: 180 CSLS---ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVL 236
S E K ++F+G +P++ EDE + E GP + + L+ DP + +NRG++F+
Sbjct: 117 ESTKGPDEAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLS-GQNRGYAFIT 174
Query: 237 YYNNACADYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAAASQVKALYVKNIPDNTS 295
+ A + + + + + IS A+ + L+V +IP N +
Sbjct: 175 FCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNR--------------LFVGSIPKNKT 220
Query: 296 TEKIKELFQRHGE-VTKVVM---PPGKSGKRDFGFIHYAERSSALKAVKD--TEKYEIDG 349
E I E F + E + V++ P K R F F+ Y + SA +A + + K ++ G
Sbjct: 221 KENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG 280
Query: 350 QVLEVVLAKP 359
V+ V A P
Sbjct: 281 NVVTVEWADP 290
>gi|73950236|ref|XP_866562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 7
[Canis lupus familiaris]
gi|403287394|ref|XP_003934933.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Saimiri boliviensis boliviensis]
gi|410966348|ref|XP_003989695.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Felis catus]
gi|85681819|gb|ABC73063.1| heterogeneous nuclear ribonucleoprotein-R2 [Homo sapiens]
Length = 595
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 157/260 (60%), Gaps = 8/260 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+VF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A++A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLF 306
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ + E
Sbjct: 307 VRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGKE 360
Query: 347 IDGQVLEVVLAKPQTDKKTE 366
I+G+ +E+VLAKP K+ E
Sbjct: 361 IEGEEIEIVLAKPPDKKRKE 380
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 136/310 (43%), Gaps = 39/310 (12%)
Query: 68 ANRNDDDTPHVEEEEKP--TASVGEDEKDKHAQLLALPPNGSE----VFIGGLPK--DAS 119
AN+ + + ++EEE+P T+SV E K LP +E +F GL D
Sbjct: 2 ANQVNGNAVQLKEEEEPMDTSSVTHTEHYKTLIEAGLPQKVAERLDEIFQTGLVAYVDLD 61
Query: 120 EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179
E + L E + L + KES + V +S F + +E +G ++
Sbjct: 62 ERAIDALREFNEEGALSVLQQFKESD----LSHVQNKSA-FLCGVMKTYRQREKQGSKVQ 116
Query: 180 CSLS---ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVL 236
S E K ++F+G +P++ EDE + E GP + + L+ DP + +NRG++F+
Sbjct: 117 ESTKGPDEAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLS-GQNRGYAFIT 174
Query: 237 YYNNACADYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAAASQVKALYVKNIPDNTS 295
+ A + + + + + IS A+ + L+V +IP N +
Sbjct: 175 FCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNR--------------LFVGSIPKNKT 220
Query: 296 TEKIKELFQRHGE-VTKVVM---PPGKSGKRDFGFIHYAERSSALKAVKD--TEKYEIDG 349
E I E F + E + V++ P K R F F+ Y + SA +A + + K ++ G
Sbjct: 221 KENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG 280
Query: 350 QVLEVVLAKP 359
V+ V A P
Sbjct: 281 NVVTVEWADP 290
>gi|338722115|ref|XP_003364486.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Equus caballus]
Length = 595
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 157/260 (60%), Gaps = 8/260 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+VF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A++A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLF 306
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ + E
Sbjct: 307 VRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGKE 360
Query: 347 IDGQVLEVVLAKPQTDKKTE 366
I+G+ +E+VLAKP K+ E
Sbjct: 361 IEGEEIEIVLAKPPDKKRKE 380
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 136/310 (43%), Gaps = 39/310 (12%)
Query: 68 ANRNDDDTPHVEEEEKP--TASVGEDEKDKHAQLLALPPNGSE----VFIGGLPK--DAS 119
AN+ + + ++EEE+P T+SV E K LP +E +F GL D
Sbjct: 2 ANQVNGNAVQLKEEEEPMDTSSVTHTEHYKTLIEAGLPQKVAERLDEIFQTGLVAYVDLD 61
Query: 120 EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179
E + L E + L + KES + V +S F + +E +G ++
Sbjct: 62 ERAIDALREFNEEGALSVLQQFKESD----LSHVQNKSA-FLCGVMKTYRQREKQGSKVQ 116
Query: 180 CSLS---ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVL 236
S E K ++F+G +P++ EDE + E GP + + L+ DP + +NRG++F+
Sbjct: 117 ESTKGPDEAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLS-GQNRGYAFIT 174
Query: 237 YYNNACADYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAAASQVKALYVKNIPDNTS 295
+ A + + + + + IS A+ + L+V +IP N +
Sbjct: 175 FCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNR--------------LFVGSIPKNKT 220
Query: 296 TEKIKELFQRHGE-VTKVVM---PPGKSGKRDFGFIHYAERSSALKAVKD--TEKYEIDG 349
E I E F + E + V++ P K R F F+ Y + SA +A + + K ++ G
Sbjct: 221 KENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG 280
Query: 350 QVLEVVLAKP 359
V+ V A P
Sbjct: 281 NVVTVEWADP 290
>gi|194386914|dbj|BAG59823.1| unnamed protein product [Homo sapiens]
Length = 595
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 157/260 (60%), Gaps = 8/260 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+VF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A++A+
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLF 306
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ + E
Sbjct: 307 VRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGKE 360
Query: 347 IDGQVLEVVLAKPQTDKKTE 366
I+G+ +E+VLAKP K+ E
Sbjct: 361 IEGEEIEIVLAKPPDKKRKE 380
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 136/310 (43%), Gaps = 39/310 (12%)
Query: 68 ANRNDDDTPHVEEEEKP--TASVGEDEKDKHAQLLALPPNGSE----VFIGGLPK--DAS 119
AN+ + + ++EEE+P T+SV E K LP +E +F GL D
Sbjct: 2 ANQVNGNAVQLKEEEEPMDTSSVTHTEHYKTLIEAGLPQKVAERLDEIFQTGLVAYVDLD 61
Query: 120 EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179
E + L E + L + KES + V +S F + +E +G ++
Sbjct: 62 ERAIDALREFNEEGALSVLQQFKESD----LSHVQNKSA-FLCGVMKTYRQREKQGSRVQ 116
Query: 180 CSLS---ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVL 236
S E K ++F+G +P++ EDE + E GP + + L+ DP + +NRG++F+
Sbjct: 117 ESTKGPDEAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLS-GQNRGYAFIT 174
Query: 237 YYNNACADYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAAASQVKALYVKNIPDNTS 295
+ A + + + + + IS A+ + L+V +IP N +
Sbjct: 175 FCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNR--------------LFVGSIPKNKT 220
Query: 296 TEKIKELFQRHGE-VTKVVM---PPGKSGKRDFGFIHYAERSSALKAVKD--TEKYEIDG 349
E I E F + E + V++ P K R F F+ Y + SA +A + + K ++ G
Sbjct: 221 KENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG 280
Query: 350 QVLEVVLAKP 359
V+ V A P
Sbjct: 281 NVVTVEWADP 290
>gi|34393486|dbj|BAC83046.1| putative RRM RNA binding protein NSAP1 [Oryza sativa Japonica
Group]
Length = 613
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 169/299 (56%), Gaps = 27/299 (9%)
Query: 78 VEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR 137
VEEEE G E+ K + EVF+GGL +DA E+D+R + G++ EVR
Sbjct: 220 VEEEE-----AGMSERRKRMTM--------EVFVGGLHRDAKEDDVRAVFAKAGEITEVR 266
Query: 138 LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKN 197
++ + +G++KG+ FV +R AKKAI E + ++ GK R ++ +R+F+GN+ K
Sbjct: 267 MIMNPLAGKNKGYCFVRYRHAAQAKKAIAEFGNVKICGKLCRAAVPVGNDRIFLGNINKK 326
Query: 198 WTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK 256
W +++ K ++ +G ++++ L D NP NRGF+F+ + A + +K+ N
Sbjct: 327 WKKEDVIKQLKKIGIENIDSVTLKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNAF 386
Query: 257 LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVV--- 313
G ++WA+P + PD QVK+++V IP + ++KE+F++HG++ VV
Sbjct: 387 GKGLNIRVAWAEPLNDPDEKDM--QVKSIFVDGIPTSWDHAQLKEIFKKHGKIESVVLSR 444
Query: 314 -MPPGKSGKRDFGFIHYAERSSALKAVK--DTEKYEIDGQV--LEVVLAKP-QTDKKTE 366
MP K +RDF FI+Y R +A+ ++ D E++ +G ++V LAKP Q K+T+
Sbjct: 445 DMPSAK--RRDFAFINYITREAAISCLESFDKEEFSKNGSKVNIKVSLAKPAQQSKQTK 501
>gi|431893805|gb|ELK03622.1| RNA-binding protein 47 [Pteropus alecto]
Length = 578
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 150/262 (57%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K
Sbjct: 56 AHPQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNE 114
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 115 AKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIV 174
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D
Sbjct: 175 YASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVME 234
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
+ VK LYV+N+ T+ + IK++F + G V +V RD+ F+H+A R A+
Sbjct: 235 T-VKILYVRNLMIETTEDTIKKIFGQFNPGCVERV------KKIRDYAFVHFASREDAVH 287
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+ + E++G LEV LAKP
Sbjct: 288 AMNNLNGTELEGSCLEVTLAKP 309
>gi|339234953|ref|XP_003379031.1| RNA-binding protein 47 [Trichinella spiralis]
gi|316978381|gb|EFV61375.1| RNA-binding protein 47 [Trichinella spiralis]
Length = 567
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 152/261 (58%), Gaps = 12/261 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G LP+D +E++L + E +G ++E+R+M D +G ++G+AFV+F KE AK
Sbjct: 80 PPKGCEVFVGKLPRDVTEQELVPVFERVGRIYEMRMMMD-FNGSNRGYAFVTFCDKEQAK 138
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A +L+ E++ G+ I S RL++ +P++ + ++ R I + GV + L
Sbjct: 139 RACQQLNGFEIRRGRFIGVLKSVDNCRLYVSGIPRDKSREDVRSEIARLTDGVVDVILYP 198
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ S+NRGF+F+ Y ++ A +R+K+ L GN T+ WA+P+ D A Q
Sbjct: 199 SAMDKSKNRGFAFIEYESHRSAAMARRKLAPNRLTLWGNEITVDWAEPERDVDEETMA-Q 257
Query: 282 VKALYVKNIPDNTSTEKIKELFQR---HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
VK LYV+N+ +T+ E ++E+ + G V +V RD+ F+H++ R A++
Sbjct: 258 VKKLYVRNLMMHTTEEHLREVVEAISGTGTVERV------KKIRDYAFVHFSRREDAIRV 311
Query: 339 VKDTEKYEIDGQVLEVVLAKP 359
+ ++DG V+EV LAKP
Sbjct: 312 QEALNGQDLDGSVVEVKLAKP 332
>gi|426345799|ref|XP_004040586.1| PREDICTED: probable RNA-binding protein 46 [Gorilla gorilla
gorilla]
Length = 514
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 151/266 (56%), Gaps = 11/266 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+
Sbjct: 38 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 96
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI L++ E++ GK I +S RLFIG +PK ++E ++ V GV + +
Sbjct: 97 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 156
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +
Sbjct: 157 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQR 215
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 216 VKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAM 269
Query: 340 KDTEKYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 270 SVMNGKCIDGASIEVTLAKPVNKENT 295
>gi|395542865|ref|XP_003773345.1| PREDICTED: RNA-binding protein 47 isoform 2 [Sarcophilus harrisii]
Length = 521
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 147/260 (56%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTHKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A+ A+
Sbjct: 245 VKILYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSRDDAVHAM 298
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 299 NSLNGTELEGSCLEVTLAKP 318
>gi|351715567|gb|EHB18486.1| APOBEC1 complementation factor [Heterocephalus glaber]
Length = 588
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 148/260 (56%), Gaps = 14/260 (5%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKLE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLFIG +PK +E ++ V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFIGGIPKTKKREEILSEVKKVTEGVVDVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
S VK LYV+N+ +TS E I+ F K D+ F+H+++R A++A+
Sbjct: 229 S-VKILYVRNLMLSTSEEIIEREFNNI-----------KPEIWDYAFVHFSKREDAVEAM 276
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 277 KALNGKVLDGSPIEVTLAKP 296
>gi|126331701|ref|XP_001365615.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Monodelphis
domestica]
Length = 523
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 147/260 (56%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTHKHEAK 125
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A+ A+
Sbjct: 245 VKILYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAM 298
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 299 NSLNGTELEGSCLEVTLAKP 318
>gi|344245091|gb|EGW01195.1| APOBEC1 complementation factor [Cricetulus griseus]
Length = 1001
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 154/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGVVDVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++
Sbjct: 229 S-VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKK------IRDYAFVHFSNREDAVE 281
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|327279356|ref|XP_003224422.1| PREDICTED: APOBEC1 complementation factor-like [Anolis
carolinensis]
Length = 589
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 150/257 (58%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ A+ AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEARNAI 113
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E I+ V GV + +
Sbjct: 114 RQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEIKKVTDGVVDVIVYPSAA 173
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D S VK
Sbjct: 174 DKAKNRGFAFVEYGSHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDED-TMSAVKI 232
Query: 285 LYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ +T+ E I++ F + G V +V RD+ F+H+ R A++A+K
Sbjct: 233 LYVRNLMLSTTEETIEKEFSSIKPGSVERV------KKIRDYAFVHFNNREDAVEAMKVL 286
Query: 343 EKYEIDGQVLEVVLAKP 359
+DG ++V LAKP
Sbjct: 287 NGKMVDGSPIKVTLAKP 303
>gi|297725433|ref|NP_001175080.1| Os07g0180800 [Oryza sativa Japonica Group]
gi|255677562|dbj|BAH93808.1| Os07g0180800 [Oryza sativa Japonica Group]
Length = 650
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 169/299 (56%), Gaps = 27/299 (9%)
Query: 78 VEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR 137
VEEEE G E+ K + EVF+GGL +DA E+D+R + G++ EVR
Sbjct: 220 VEEEE-----AGMSERRKRMTM--------EVFVGGLHRDAKEDDVRAVFAKAGEITEVR 266
Query: 138 LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKN 197
++ + +G++KG+ FV +R AKKAI E + ++ GK R ++ +R+F+GN+ K
Sbjct: 267 MIMNPLAGKNKGYCFVRYRHAAQAKKAIAEFGNVKICGKLCRAAVPVGNDRIFLGNINKK 326
Query: 198 WTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK 256
W +++ K ++ +G ++++ L D NP NRGF+F+ + A + +K+ N
Sbjct: 327 WKKEDVIKQLKKIGIENIDSVTLKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNAF 386
Query: 257 LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVV--- 313
G ++WA+P + PD QVK+++V IP + ++KE+F++HG++ VV
Sbjct: 387 GKGLNIRVAWAEPLNDPDEKDM--QVKSIFVDGIPTSWDHAQLKEIFKKHGKIESVVLSR 444
Query: 314 -MPPGKSGKRDFGFIHYAERSSALKAVK--DTEKYEIDGQV--LEVVLAKP-QTDKKTE 366
MP K +RDF FI+Y R +A+ ++ D E++ +G ++V LAKP Q K+T+
Sbjct: 445 DMPSAK--RRDFAFINYITREAAISCLESFDKEEFSKNGSKVNIKVSLAKPAQQSKQTK 501
>gi|167963512|ref|NP_001108158.1| RNA-binding protein 47 [Danio rerio]
Length = 600
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 149/260 (57%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G E+F+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 78 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 136
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + + V GV + +
Sbjct: 137 RAVRELNNFEIRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVLDVIVYA 196
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 197 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 255
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ TS E +++ F + G V +V RD+ F+H+A R A+ A+
Sbjct: 256 VKILYVRNLMIETSEEILRQTFGQFNPGCVERV------KKIRDYAFVHFASRDDAVVAM 309
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
+ EI+G +EV LAKP
Sbjct: 310 DNLNGTEIEGSRIEVTLAKP 329
>gi|321478600|gb|EFX89557.1| hypothetical protein DAPPUDRAFT_24221 [Daphnia pulex]
Length = 290
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 148/257 (57%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+E+F+G LP+D E++L + IG ++E+RLM D SG ++GFAF+ F ++ A +AI
Sbjct: 41 GTEIFVGKLPRDVFEDELYRIFSTIGPIYELRLMMDF-SGSNRGFAFIQFAHRQDANRAI 99
Query: 166 DELHSKELKGKT-IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ + EL+ + I S RLFIG +PK + +E + +E + GV + +
Sbjct: 100 QLMDNYELRPRHHIGVVKSIDNCRLFIGGIPKTKSREEIQGEMERLTEGVTKVIVYSSIT 159
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ ++NRGF+FV Y N+ A +R+K++ +L G + WA+P++ + SQV
Sbjct: 160 DKTKNRGFAFVEYINHRAASKARRKLIPDRIQLWGKEIAVDWAEPENEIEED-VMSQVTV 218
Query: 285 LYVKNIPDNTSTEKIKELFQRHGE--VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + ++ELF R + V K+ M RDF FIH++ R A KA+++
Sbjct: 219 LYVRNLSLTTTEQVLRELFNRVSDDNVQKLKMM------RDFAFIHFSSREKAEKAMRNM 272
Query: 343 EKYEIDGQVLEVVLAKP 359
EI+G +E+ AKP
Sbjct: 273 NHTEINGTTIEITWAKP 289
>gi|410917474|ref|XP_003972211.1| PREDICTED: RNA-binding protein 47-like [Takifugu rubripes]
Length = 601
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 148/260 (56%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G E+F+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 79 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTEKHEAK 137
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + + V GV + +
Sbjct: 138 RAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVIDVIVYA 197
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 198 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 256
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ TS E I+++F + G V +V RD+ F+H+ R A+ A+
Sbjct: 257 VKILYVRNLMMETSEETIRKVFSQWNPGCVERV------KKIRDYAFVHFNSRDDAVLAM 310
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
E++G +EV LAKP
Sbjct: 311 NHLNGTEVEGSCIEVTLAKP 330
>gi|225439260|ref|XP_002263631.1| PREDICTED: uncharacterized protein LOC100254786 [Vitis vinifera]
Length = 770
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 153/260 (58%), Gaps = 8/260 (3%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+E+FIGGL K A EED+R + E +G+V EVRLM + ++G++KG+AF+ F AK+A+
Sbjct: 331 TEIFIGGLDKSAREEDIRKVFEEVGEVLEVRLMMNSKTGKNKGYAFLRFALASDAKRALA 390
Query: 167 ELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-GVETIELIKDPQN 225
+ E+ GK + E + +F+GN+ KNW ++ K+++++G ++ + ++ DP N
Sbjct: 391 KYPKIEICGKQCGTAPVEGNDTIFLGNIDKNWKNEDVVKLLQEIGIDKIDKVTVMVDPSN 450
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
RNRGF+F+ N A + +K+ + ++WA+P + PD +VK +
Sbjct: 451 IERNRGFAFLELETNKDAQLAYKKLQKKDVFGKHQNIKVAWAEPLNEPDEDEML-KVKTV 509
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG--KSGKRDFGFIHYAERSSALKAVKDTE 343
Y + IP + EK+++ F++ GE+ VV+ S ++DF F+ Y R +AL+ ++
Sbjct: 510 YAEYIPSSWEEEKVRDCFKKFGEIESVVLARNLRSSKRKDFAFVKYTTREAALECIESFS 569
Query: 344 K---YEIDGQV-LEVVLAKP 359
+ ++ + +V ++V LAKP
Sbjct: 570 REPLHDAECKVKVKVSLAKP 589
>gi|390358938|ref|XP_781163.2| PREDICTED: APOBEC1 complementation factor-like isoform 3
[Strongylocentrotus purpuratus]
Length = 567
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 157/289 (54%), Gaps = 14/289 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G EVF+G +P+D E++L + IG ++E+RLM D SG ++G+AFV + ++E
Sbjct: 52 AQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMDF-SGSNRGYAFVMYTTRED 110
Query: 161 AKKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
KKA+ +L++ E+ KG+ + S RLF+G +PKN ++E + V V + +
Sbjct: 111 GKKAVKQLNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKVTEQVVDVIV 170
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y N+ A +R+K++ +L G+ + WA+P+ D
Sbjct: 171 YPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDEDVMR 230
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
VK LYV+N+ +T+ E I + F + G V +V RDF FIH+ R AL
Sbjct: 231 G-VKILYVRNLMLHTTEETIAKEFNAFKEGSVERV------KKLRDFAFIHFFTREDALN 283
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYG 386
A+ + +DG +EVVLAKP DK Y+PG ++ YG
Sbjct: 284 AMNAMDDPLLDGAKIEVVLAKP-VDKGN--YVRYTPGAGRGYVQQGLYG 329
>gi|223649326|gb|ACN11421.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 628
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 161/279 (57%), Gaps = 15/279 (5%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F SK+
Sbjct: 161 AQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFINFCSKDA 220
Query: 161 AKKAIDELHSKELKG-KTIRCSLSETKNRLFIGNVPKNWTE----DEFRKVIEDVGPGVE 215
A +A+ + E++ K + +S NRLF+G++PKN T D+F KV E G++
Sbjct: 221 AAEAVKLCDNYEIRSRKHLGVCISVANNRLFVGSIPKNKTRESILDDFSKVTE----GLQ 276
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
+ L P + NRGF F+ Y ++ A +R+ +++ + GN T+ WA+P + D
Sbjct: 277 EVILYHQPDDKETNRGFCFLEYEDHKSAAQARRCLMSGKVMVWGNPVTVEWANPVTERDT 336
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSA 335
A+Q K L+V+ + + + E + + F G++ +V +D+ F+H+ +R +A
Sbjct: 337 DVMANQAKVLFVRKLATSVTEELLVKTFSAFGKLERVYK------LKDYAFVHFEDRDAA 390
Query: 336 LKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPG 374
+KA+ D E+ G+ +E+ +AK + +KT+ +PG
Sbjct: 391 VKAMVDMNGKELGGEAIEIRIAKKKKARKTQRQTTRNPG 429
>gi|124487289|ref|NP_001074543.1| APOBEC1 complementation factor [Mus musculus]
gi|341940157|sp|Q5YD48.2|A1CF_MOUSE RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
Length = 595
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+RLM D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDF-NGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|432109353|gb|ELK33614.1| RNA-binding protein 47 [Myotis davidii]
Length = 733
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 148/260 (56%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 210 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKADAK 268
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 269 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 328
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 329 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 387
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ + IK++F + G V +V RD+ F+H+A R A+ A+
Sbjct: 388 VKILYVRNLMIETTEDTIKKVFGQFNPGCVERV------KKIRDYAFVHFASREDAVHAM 441
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 442 NHLNGTELEGSCLEVTLAKP 461
>gi|390358936|ref|XP_003729369.1| PREDICTED: APOBEC1 complementation factor-like isoform 2
[Strongylocentrotus purpuratus]
Length = 487
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 157/289 (54%), Gaps = 14/289 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G EVF+G +P+D E++L + IG ++E+RLM D SG ++G+AFV + ++E
Sbjct: 52 AQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMDF-SGSNRGYAFVMYTTRED 110
Query: 161 AKKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
KKA+ +L++ E+ KG+ + S RLF+G +PKN ++E + V V + +
Sbjct: 111 GKKAVKQLNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKVTEQVVDVIV 170
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y N+ A +R+K++ +L G+ + WA+P+ D
Sbjct: 171 YPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDEDVMR 230
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
VK LYV+N+ +T+ E I + F + G V +V RDF FIH+ R AL
Sbjct: 231 G-VKILYVRNLMLHTTEETIAKEFNAFKEGSVERV------KKLRDFAFIHFFTREDALN 283
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYG 386
A+ + +DG +EVVLAKP DK Y+PG ++ YG
Sbjct: 284 AMNAMDDPLLDGAKIEVVLAKP-VDKGN--YVRYTPGAGRGYVQQGLYG 329
>gi|343960931|dbj|BAK62055.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 497
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 160/264 (60%), Gaps = 13/264 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+VF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A++A+
Sbjct: 27 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 86
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTE----DEFRKVIEDVGPGVETIELIKD 222
S E++ GK + +S NRLF+G++PKN T+ +EF KV + G+ + L
Sbjct: 87 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVT-GLTEGLVDVILYHQ 145
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +V
Sbjct: 146 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KV 204
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
K L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 205 KVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEM 258
Query: 343 EKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 259 NGKEIEGEEIEIVLAKPPDKKRKE 282
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 26/186 (13%)
Query: 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
E K ++F+G +P++ EDE + E GP + + L+ DP + +NRG++F+ + A
Sbjct: 23 EAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLS-GQNRGYAFITFCGKEAA 80
Query: 244 DYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKEL 302
+ + + + + IS A+ + L+V +IP N + E I E
Sbjct: 81 QEAVKLCDSYEIRPGKHLGVCISVANNR--------------LFVGSIPKNKTKENILEE 126
Query: 303 FQRHGEVTK----VVM---PPGKSGKRDFGFIHYAERSSALKAVKD--TEKYEIDGQVLE 353
F + +T+ V++ P K R F F+ Y + SA +A + + K ++ G V+
Sbjct: 127 FSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVT 186
Query: 354 VVLAKP 359
V A P
Sbjct: 187 VEWADP 192
>gi|390358934|ref|XP_003729368.1| PREDICTED: APOBEC1 complementation factor-like isoform 1
[Strongylocentrotus purpuratus]
Length = 548
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 157/289 (54%), Gaps = 14/289 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G EVF+G +P+D E++L + IG ++E+RLM D SG ++G+AFV + ++E
Sbjct: 52 AQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMDF-SGSNRGYAFVMYTTRED 110
Query: 161 AKKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
KKA+ +L++ E+ KG+ + S RLF+G +PKN ++E + V V + +
Sbjct: 111 GKKAVKQLNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKVTEQVVDVIV 170
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y N+ A +R+K++ +L G+ + WA+P+ D
Sbjct: 171 YPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDEDVMR 230
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
VK LYV+N+ +T+ E I + F + G V +V RDF FIH+ R AL
Sbjct: 231 G-VKILYVRNLMLHTTEETIAKEFNAFKEGSVERV------KKLRDFAFIHFFTREDALN 283
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYG 386
A+ + +DG +EVVLAKP DK Y+PG ++ YG
Sbjct: 284 AMNAMDDPLLDGAKIEVVLAKP-VDKGN--YVRYTPGAGRGYVQQGLYG 329
>gi|326507886|dbj|BAJ86686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 751
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/372 (29%), Positives = 193/372 (51%), Gaps = 30/372 (8%)
Query: 16 DNYMEEMDDDVE------EQVEEDPEE-------EGGDGNFEENDDDEEYDHSKAGASEK 62
DN E+ D ++ EQ EEDP+E G+G E D ++A +
Sbjct: 136 DNSAEDKQDQLQQGQMDAEQEEEDPQEVIFEDSASVGEGQAATELKQGE-DRARATEEDD 194
Query: 63 DQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGS-----EVFIGGLPKD 117
Q+A ++N++ E+ A ++ +D+ + + N E+F+GGL ++
Sbjct: 195 GQAAAKSKNEEHRARAAEKHGQAAGEVKENEDERKVMSDMAKNRQRKKELEIFVGGLDRE 254
Query: 118 ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177
A EED+R + +GDV EVRL KD + ++KGFAFV F +KE +A+ E+ + + GK
Sbjct: 255 AVEEDIRKVFSQVGDVVEVRLHKDFSTSKNKGFAFVRFANKEQVARALAEMKNPMIHGKR 314
Query: 178 IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVL 236
+ SE + LF+ N+ WT++ +K + D G GV+++ L+ D QN ++RGF+F+
Sbjct: 315 CGVAASEDNDTLFLCNICNTWTKEAIKKRLLDYGVEGVQSLTLVPDTQNEGQSRGFAFLE 374
Query: 237 Y--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNT 294
+ + +A + R + +A F T +++A+P D A QVK++++ +P
Sbjct: 375 FSCHADAMLAFKRLQQPDALFGHPERTAKVAFAEPIKEADAEVMA-QVKSVFINGLPPYW 433
Query: 295 STEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEI--DGQ 350
E++K F+ +G + +VV+ S + DFGF++++ AL ++ T E+ DG+
Sbjct: 434 DEERVKNRFKAYGLIERVVLARNMSSAKRNDFGFVNFSTHEEALACIEATNNTELGDDGK 493
Query: 351 V---LEVVLAKP 359
+ V L+ P
Sbjct: 494 AKLKVRVRLSNP 505
>gi|393911205|gb|EJD76209.1| HnRNP-R [Loa loa]
Length = 729
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 151/263 (57%), Gaps = 10/263 (3%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+G E++IG +PK+ E+ L L E +G ++++RLM D +G ++G+AF+++ K A +A
Sbjct: 311 SGHEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTSAYEA 370
Query: 165 IDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+ E+ GK ++ ++S RLFIGN+PK+ +++E ++ GV + P
Sbjct: 371 AKKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSP 430
Query: 224 Q--NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+NRGF F+ + ++ A +++K+ + + + WA+ + PD A +
Sbjct: 431 DAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETMA-K 489
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ + + E++KE+F +GEV + RD+ FIH+ ER A+KA++
Sbjct: 490 VKVLYVRNLKEAVTEEQLKEMFSAYGEVDRA------KKIRDYAFIHFMEREPAIKAMEA 543
Query: 342 TEKYEIDGQVLEVVLAKPQTDKK 364
E++G +++ LAKPQ+DKK
Sbjct: 544 LNGTELEGIAIDISLAKPQSDKK 566
>gi|395856660|ref|XP_003800739.1| PREDICTED: RNA-binding protein 47 [Otolemur garnettii]
Length = 591
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K
Sbjct: 65 AHPQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHE 123
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK+A+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 124 AKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIV 183
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D
Sbjct: 184 YASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVME 243
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
+ VK LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A+
Sbjct: 244 T-VKILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVH 296
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+ E++G LEV LAKP
Sbjct: 297 AMNSLNGTELEGSCLEVTLAKP 318
>gi|417403083|gb|JAA48365.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 590
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 148/257 (57%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK++F + G V +V RD+ F+H+A R A+ A+K
Sbjct: 248 LYVRNLMMETTEDTIKKIFGQFNPGCVERV------KKIRDYAFVHFASREDAVHAMKKL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
+++G LEV LAKP
Sbjct: 302 NGTDLEGSCLEVTLAKP 318
>gi|58477316|gb|AAH89622.1| APOBEC1 complementation factor [Mus musculus]
Length = 384
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+RLM D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDF-NGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|224133750|ref|XP_002327671.1| predicted protein [Populus trichocarpa]
gi|222836756|gb|EEE75149.1| predicted protein [Populus trichocarpa]
Length = 284
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 143/237 (60%), Gaps = 6/237 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+F+GGL +DA+EEDLR + E IG+V EVRL K+ + +KG+AFV F SKE K+A+ E
Sbjct: 22 EIFVGGLDRDATEEDLRKVFEKIGEVVEVRLHKNLSTNRNKGYAFVKFASKEHVKRALSE 81
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
+ + ++GK + SE + LF+GN+ WT++ R+ ++D G GVE I ++ D Q+
Sbjct: 82 MKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENITVVSDAQHE 141
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
R+RGF+F+ + + +A Y R + + F T +++A+P PD A QVK
Sbjct: 142 GRSRGFAFLEFACHADAMLAYKRLQKPDVVFGHPERTAKVAFAEPIREPDPEIMA-QVKT 200
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAV 339
+++ +P + ++++E + +GE+ +VV+ S ++DFGF+ ++ A+ +
Sbjct: 201 IFLDGLPPHWDEDRVRECLKGYGEIVRVVLARNMSTAKRKDFGFVDFSTHDDAVACI 257
>gi|170592443|ref|XP_001900974.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
gi|158591041|gb|EDP29654.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
Length = 709
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 151/263 (57%), Gaps = 10/263 (3%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+G E++IG +PK+ E+ L L E +G ++++RLM D +G ++G+AF+++ K A +A
Sbjct: 291 SGHEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTAAYEA 350
Query: 165 IDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+ E+ GK ++ ++S RLFIGN+PK+ +++E ++ GV + P
Sbjct: 351 AKKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSP 410
Query: 224 Q--NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+NRGF F+ + ++ A +++K+ + + + WA+ + PD A +
Sbjct: 411 DAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETMA-K 469
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ + + E++KE+F +GEV + RD+ FIH+ ER A+KA++
Sbjct: 470 VKVLYVRNLKEAVTEEQLKEMFSAYGEVDRA------KKIRDYAFIHFMEREPAIKAMEA 523
Query: 342 TEKYEIDGQVLEVVLAKPQTDKK 364
E++G +++ LAKPQ+DKK
Sbjct: 524 LNGTELEGIAIDISLAKPQSDKK 546
>gi|222636546|gb|EEE66678.1| hypothetical protein OsJ_23325 [Oryza sativa Japonica Group]
Length = 345
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 159/269 (59%), Gaps = 14/269 (5%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL +DA E+D+R + G++ EVR++ + +G++KG+ FV +R AKKAI E
Sbjct: 11 EVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAAQAKKAIAE 70
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
+ ++ GK R ++ +R+F+GN+ K W +++ K ++ +G ++++ L D NP
Sbjct: 71 FGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNP 130
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
NRGF+F+ + A + +K+ N G ++WA+P + PD QVK+++
Sbjct: 131 VCNRGFAFLELETSRDARMAYKKLSQKNAFGKGLNIRVAWAEPLNDPDEKDM--QVKSIF 188
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIHYAERSSALKAVK-- 340
V IP + ++KE+F++HG++ VV MP K +RDF FI+Y R +A+ ++
Sbjct: 189 VDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAK--RRDFAFINYITREAAISCLESF 246
Query: 341 DTEKYEIDGQV--LEVVLAKP-QTDKKTE 366
D E++ +G ++V LAKP Q K+T+
Sbjct: 247 DKEEFSKNGSKVNIKVSLAKPAQQSKQTK 275
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 77 HVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIG--DVF 134
H + +K A G + A+P +F+G + K +ED+ + IG ++
Sbjct: 60 HAAQAKKAIAEFGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENID 119
Query: 135 EVRLMKDKES-GESKGFAFVSFRSKEFAKKAIDELHSKEL--KGKTIRCSLSETKN---- 187
V L D + ++GFAF+ + A+ A +L K KG IR + +E N
Sbjct: 120 SVTLKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNAFGKGLNIRVAWAEPLNDPDE 179
Query: 188 ------RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNA 241
+F+ +P +W + +++ + G +E++ L +D + R R F+F+ Y
Sbjct: 180 KDMQVKSIFVDGIPTSWDHAQLKEIFKKHGK-IESVVLSRDMPSAKR-RDFAFINYITRE 237
Query: 242 CA 243
A
Sbjct: 238 AA 239
>gi|393911204|gb|EJD76208.1| HnRNP-R, variant [Loa loa]
Length = 696
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 151/263 (57%), Gaps = 10/263 (3%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+G E++IG +PK+ E+ L L E +G ++++RLM D +G ++G+AF+++ K A +A
Sbjct: 278 SGHEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTSAYEA 337
Query: 165 IDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+ E+ GK ++ ++S RLFIGN+PK+ +++E ++ GV + P
Sbjct: 338 AKKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSP 397
Query: 224 Q--NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+NRGF F+ + ++ A +++K+ + + + WA+ + PD A +
Sbjct: 398 DAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETMA-K 456
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ + + E++KE+F +GEV + RD+ FIH+ ER A+KA++
Sbjct: 457 VKVLYVRNLKEAVTEEQLKEMFSAYGEVDRA------KKIRDYAFIHFMEREPAIKAMEA 510
Query: 342 TEKYEIDGQVLEVVLAKPQTDKK 364
E++G +++ LAKPQ+DKK
Sbjct: 511 LNGTELEGIAIDISLAKPQSDKK 533
>gi|81916405|sp|Q923K9.1|A1CF_RAT RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|15072439|gb|AAK50145.1| APOBEC-1 complementation factor long isoform [Rattus norvegicus]
Length = 594
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|443733097|gb|ELU17586.1| hypothetical protein CAPTEDRAFT_178834 [Capitella teleta]
Length = 545
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 164/269 (60%), Gaps = 17/269 (6%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G +++ RLM + +G ++G+AFV+F +++ A+
Sbjct: 169 PGPGHEVFAGKIPKDMFEDELVPLFENCGPIWDFRLMMEPLTGLNRGYAFVTFTTRDAAQ 228
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE--L 219
+A+ +L + E+K + ++ ++S RLF+GN+PK+ T +E +IE+ E++ +
Sbjct: 229 EAVKQLDNYEIKPTRRLKVNVSVANVRLFVGNIPKSKTREE---IIEEFSKLTESLTDVI 285
Query: 220 IKDPQNPS--RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
+ + + + +NRGF+F+ Y ++ A +++K+ N ++ + WADP+ PD
Sbjct: 286 VYNVADDAKKKNRGFAFLEYDSHKSASVAKRKLGNGRQRVWNCDIIVDWADPQEEPDEE- 344
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S+VK LYV+N+ + + ++I+E F+ G+V +V +D+GF+H+ ER AL
Sbjct: 345 TMSKVKVLYVRNLKQDVTEDQIREKFEVFGKVERV------KKIKDYGFVHFEEREHALA 398
Query: 338 AVKDTE-KYEI-DGQVLEVVLAKPQTDKK 364
A+KD K E+ +G V+E+ LAKP T+ K
Sbjct: 399 AMKDLNGKQELGEGSVMEISLAKPPTENK 427
>gi|348571794|ref|XP_003471680.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Cavia porcellus]
Length = 592
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 148/257 (57%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A++A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVQAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|354490876|ref|XP_003507582.1| PREDICTED: APOBEC1 complementation factor-like [Cricetulus griseus]
Length = 592
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 154/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGVVDVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++
Sbjct: 229 S-VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVE 281
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>gi|19173760|ref|NP_596891.1| APOBEC1 complementation factor [Rattus norvegicus]
gi|15077247|gb|AAK83095.1|AF290984_1 APOBEC-1 complementation factor short isoform [Rattus norvegicus]
Length = 586
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|291385687|ref|XP_002709446.1| PREDICTED: RNA binding motif protein 47-like isoform 1 [Oryctolagus
cuniculus]
Length = 591
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 147/257 (57%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 71 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 129
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 130 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 189
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 190 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 248
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A++A+
Sbjct: 249 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVRAMNSL 302
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 303 NGTELEGSCLEVTLAKP 319
>gi|313212894|emb|CBY36802.1| unnamed protein product [Oikopleura dioica]
Length = 542
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 152/261 (58%), Gaps = 12/261 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+FIG LP+D E++L + E G FE+R+M D +G ++GF FV+++++ +
Sbjct: 71 PEKGTEIFIGKLPRDLFEDELYPVLESYGPAFELRMMLD-FNGNNRGFCFVTYQTRNESH 129
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ +++ E+ KG+ + S RLF+G +PK+ DE + ++ V GV + +
Sbjct: 130 AALKGINNLEIRKGRLLGACQSVDNCRLFVGGIPKSKKRDEIMEEMKKVTEGVVDVIVYP 189
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ S+NRGFSFV Y ++ A +R+K++ +L G+ + WA+P+ + S +
Sbjct: 190 SAADKSKNRGFSFVEYKDHKAAAMARRKLMPGRIQLWGHQIAVDWAEPEIEVEESVMET- 248
Query: 282 VKALYVKNIPDNTSTEKIKELFQR---HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
VK LYV+N+ +TS + ++ F + G + +V RD+ F+H+ R +ALKA
Sbjct: 249 VKILYVRNLMLHTSEDTLEAAFAKVTGKGTIERV------KKIRDYAFVHFNTRDNALKA 302
Query: 339 VKDTEKYEIDGQVLEVVLAKP 359
+K+ IDG ++EVVLAKP
Sbjct: 303 MKELNNGMIDGALVEVVLAKP 323
>gi|148709767|gb|EDL41713.1| mCG1979, isoform CRA_a [Mus musculus]
Length = 369
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+RLM D +G ++G+AFV+F +K+ AK
Sbjct: 37 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDF-NGNNRGYAFVTFSNKQEAK 95
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 96 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 155
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 156 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 214
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 215 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 268
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 269 KALNGKVLDGSPIEVTLAKP 288
>gi|359476835|ref|XP_002266579.2| PREDICTED: uncharacterized protein LOC100259067 [Vitis vinifera]
gi|297735034|emb|CBI17396.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 158/278 (56%), Gaps = 15/278 (5%)
Query: 96 HAQLLALP-----PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF 150
H +L A+ E+F+GGL +DA EED++ + E IG+V EVRL K+ S ++KG+
Sbjct: 310 HRELTAIAKERKISKAHEIFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGY 369
Query: 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDV 210
AFV F +KE A +A+ E+ + + GK + SE N LF+GN+ WT++ ++ ++D
Sbjct: 370 AFVKFANKEHASRALSEMKNPVICGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDY 429
Query: 211 G-PGVETIELIKDPQNPSRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWA 267
G GV I L+ +PQ+ +RGF+F+ + + +A Y R + + F T +++A
Sbjct: 430 GIEGVGNITLVPNPQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFA 489
Query: 268 DPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFG 325
+P PD A QVK+++V +P + ++++E F+ +GE+ ++V+ S ++DFG
Sbjct: 490 EPLREPDPEIMA-QVKSVFVDGLPPHWDEDRVREQFKGYGEIERIVLARNMSTAKRKDFG 548
Query: 326 FIHYAERSSALKAVKDTEKYEI-DGQV---LEVVLAKP 359
F+ + +AL + E+ DG ++V L+ P
Sbjct: 549 FVDFTTHEAALSCIDSVNNTELCDGNSKTKVKVRLSNP 586
>gi|146231848|gb|ABQ12999.1| hypothetical protein LOC54502 [Bos taurus]
Length = 492
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 147/257 (57%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|27462518|gb|AAO15465.1|AF442133_1 APOBEC-1 complementation factor 43 kDa variant [Rattus norvegicus]
Length = 383
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|198423269|ref|XP_002131002.1| PREDICTED: similar to APOBEC1 complementation factor [Ciona
intestinalis]
Length = 708
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 121/409 (29%), Positives = 196/409 (47%), Gaps = 59/409 (14%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
+P G EVF+G LP+D E++L + E G ++E+RLM D +G ++GFAFV + +
Sbjct: 96 VIPGKGCEVFVGKLPRDLYEDELVPVLEKCGRIYELRLMMD-FNGNNRGFAFVKYCAASE 154
Query: 161 AKKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
A+ A+ +L++ E+ KG+ + S RLF+G +PK ++E ++ V GV + +
Sbjct: 155 ARAALKDLNNFEIRKGRLLGVCKSVDNCRLFVGGIPKTKQKEEILIEMKKVTEGVCDVIV 214
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ +NRGF+FV Y ++ A +R+K+++ ++ G+ + WA+P+ D A
Sbjct: 215 YPSAADKQKNRGFAFVEYQDHHTAAMARRKLMHTRPQIWGHPIAVDWAEPEVEVDDDIMA 274
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK----RDFGFIHYAERSSA 335
+ VK LYV+N+ NT+ E+++ F ++P G + RD+GF+H+ R +A
Sbjct: 275 T-VKILYVRNLMLNTTEEQLEAEF-------SALVPSGSIERVKKIRDYGFVHFNTRENA 326
Query: 336 LKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEG----------------TFP------YSP 373
+K +K +DG +EV LAKP D++T T P Y P
Sbjct: 327 IKCLKQLNGKILDGSPMEVTLAKP-VDRETYVRYTRAANRVVETQEPLTIPGYVATTYDP 385
Query: 374 GLVPTHLPHAGYGG--FAGTPYGSVGT-GFGVAAGFQQPMIYGRGPMPSGMHMVP-MVLP 429
P ++ GG + G PYG+ + F P P+ G+ VP MV
Sbjct: 386 RFDPASAAYSYAGGPIYYGVPYGATTIPTLASSPRFAVP------PLRGGVPQVPGMVTQ 439
Query: 430 DGQIGYVLQQPGVQMPPPRPRRVDRSNGPGGRGGRGGSSGGDDGNRGRR 478
G G L PG + G G GRG S G + G R
Sbjct: 440 IGAAGVPLGIPGA------------TTGIAGAQGRGISLRGRNRAAGSR 476
>gi|348571796|ref|XP_003471681.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Cavia porcellus]
Length = 523
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 148/257 (57%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A++A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVQAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|350587465|ref|XP_003128987.3| PREDICTED: RNA-binding protein 47-like isoform 1 [Sus scrofa]
Length = 591
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 147/257 (57%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|27462520|gb|AAO15466.1|AF442134_1 APOBEC-1 complementation factor 45 kDa variant [Rattus norvegicus]
Length = 405
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|345319914|ref|XP_001518200.2| PREDICTED: probable RNA-binding protein 46, partial
[Ornithorhynchus anatinus]
Length = 547
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 150/263 (57%), Gaps = 11/263 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 60 GCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEAAQLAI 118
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
L++ E++ GK I +S RLFIG +PK ++E +++V GV + +
Sbjct: 119 RILNNFEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKNVTEGVVDVIVYPSAT 178
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ S+NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK
Sbjct: 179 DKSKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKV 237
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 238 LYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNRDDAMTAMSVM 291
Query: 343 EKYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 292 NGKYIDGAGIEVTLAKPVNKENT 314
>gi|291385689|ref|XP_002709447.1| PREDICTED: RNA binding motif protein 47-like isoform 2 [Oryctolagus
cuniculus]
Length = 522
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 147/257 (57%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 71 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 129
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 130 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 189
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 190 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 248
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A++A+
Sbjct: 249 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVRAMNSL 302
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 303 NGTELEGSCLEVTLAKP 319
>gi|26330794|dbj|BAC29127.1| unnamed protein product [Mus musculus]
Length = 590
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 145/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|357518111|ref|XP_003629344.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355523366|gb|AET03820.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 989
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 153/268 (57%), Gaps = 11/268 (4%)
Query: 90 EDEKDKHAQLLALPPNG-----SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES 144
++E D+H + A+ E+F+GGL +D +EEDL+ + + IG+V EVRL K+ +
Sbjct: 396 DEEHDEHMEFEAIAKQRRIRKEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSST 455
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFR 204
+++G+A V F +KE AKKA+ E+ + ++GK S SE + LF+GN+ WT++ +
Sbjct: 456 SKNRGYAVVRFANKEHAKKALSEMKNPVIRGKRCGTSPSEDNDTLFLGNICNTWTKEAVK 515
Query: 205 KVIEDVG-PGVETIELIKDPQNPSRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNT 261
+ ++D G GVE I L+ D Q+ +RGF+F+ + + +A Y R + F T
Sbjct: 516 QKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERT 575
Query: 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPP--GKS 319
+++A+P PD A QVK++++ +P + + ++E + +GE+ K+V+ S
Sbjct: 576 AKVAFAEPIREPDPEIMA-QVKSVFINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTS 634
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEI 347
++D GF+ ++ +AL V K E+
Sbjct: 635 KRKDHGFVDFSTHEAALACVDGVNKSEL 662
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI GLP E+ +R+ + G++ ++ L + + + K FV F + E A +D +
Sbjct: 598 VFINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAALACVDGV 657
Query: 169 HSKELKGKTIRCSL 182
+ EL T + L
Sbjct: 658 NKSELGDGTSKIKL 671
>gi|329664912|ref|NP_001192963.1| RNA-binding protein 47 [Bos taurus]
gi|296486627|tpg|DAA28740.1| TPA: RNA binding motif protein 47 [Bos taurus]
gi|440900817|gb|ELR51867.1| RNA-binding protein 47 [Bos grunniens mutus]
Length = 591
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 147/257 (57%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|20532346|ref|NP_620704.1| RNA-binding protein 47 [Mus musculus]
gi|188497698|ref|NP_848541.2| RNA-binding protein 47 [Mus musculus]
gi|188497701|ref|NP_001120854.1| RNA-binding protein 47 [Mus musculus]
gi|81916136|sp|Q91WT8.1|RBM47_MOUSE RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|15488668|gb|AAH13481.1| RNA binding motif protein 47 [Mus musculus]
gi|21707976|gb|AAH34195.1| Rbm47 protein [Mus musculus]
gi|26351775|dbj|BAC39524.1| unnamed protein product [Mus musculus]
gi|74206583|dbj|BAE41553.1| unnamed protein product [Mus musculus]
gi|133778325|gb|AAI12903.1| RNA binding motif protein 47 [Mus musculus]
gi|148705813|gb|EDL37760.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
gi|148705814|gb|EDL37761.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
Length = 590
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 145/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|54312090|ref|NP_001005882.1| RNA-binding protein 47 [Rattus norvegicus]
gi|81910667|sp|Q66H68.1|RBM47_RAT RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|51859195|gb|AAH81995.1| Hypothetical RNA binding protein RGD1359713 [Rattus norvegicus]
gi|149035343|gb|EDL90047.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
gi|149035344|gb|EDL90048.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
Length = 590
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 144/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E IK F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEETIKRSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|147803493|emb|CAN64286.1| hypothetical protein VITISV_002726 [Vitis vinifera]
Length = 837
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 150/262 (57%), Gaps = 11/262 (4%)
Query: 96 HAQLLALP-----PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF 150
H +L A+ E+F+GGL +DA EED++ + E IG+V EVRL K+ S ++KG+
Sbjct: 310 HRELTAIAKERKISKAHEIFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGY 369
Query: 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDV 210
AFV F +KE A +A+ E+ + + GK + SE N LF+GN+ WT++ ++ ++D
Sbjct: 370 AFVKFANKEHASRALSEMKNPVICGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDY 429
Query: 211 G-PGVETIELIKDPQNPSRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWA 267
G GV I L+ +PQ+ +RGF+F+ + + +A Y R + + F T +++A
Sbjct: 430 GIEGVGNITLVPNPQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFA 489
Query: 268 DPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFG 325
+P PD A QVK+++V +P + ++++E F+ +GE+ ++V+ S ++DFG
Sbjct: 490 EPLREPDPEIMA-QVKSVFVDGLPPHWDEDRVREQFKGYGEIERIVLARNMSTAKRKDFG 548
Query: 326 FIHYAERSSALKAVKDTEKYEI 347
F+ + +AL + E+
Sbjct: 549 FVDFTTHEAALSCIDSVNNTEL 570
>gi|410927412|ref|XP_003977143.1| PREDICTED: probable RNA-binding protein 46-like [Takifugu rubripes]
Length = 484
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 149/260 (57%), Gaps = 11/260 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L L E G ++E RLM + +GE++G+AFV + +KE A++AI
Sbjct: 76 CEVFVGKIPRDMYEDELVPLFERAGKLYEFRLMME-FTGENRGYAFVMYTNKEAAQRAIQ 134
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L + +++ GK I +S RLFIG++PK T+DE ++ V GV + + +
Sbjct: 135 MLDNYKVRPGKFIGVCVSLDNCRLFIGSIPKEKTKDEVMAEMKKVTDGVVDVIMYPSSTD 194
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
SRNRGF+FV Y ++ A +R+K++ F+L G + + WA+P+ + +V+ +
Sbjct: 195 KSRNRGFAFVEYKSHKAAAMARRKLIPGTFQLWGQSIQVDWAEPEKDVEEE-VMQRVRVI 253
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E + + F G V +V D+ F+HY R AL A+
Sbjct: 254 YVRNLMLSTTEETLFQEFSHFKPGSVERV------KKLTDYAFVHYYCREDALAALAIMN 307
Query: 344 KYEIDGQVLEVVLAKPQTDK 363
+IDG +EV+LAKP T K
Sbjct: 308 GVQIDGATIEVMLAKPATIK 327
>gi|351713281|gb|EHB16200.1| RNA-binding protein 47 [Heterocephalus glaber]
Length = 585
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 148/262 (56%), Gaps = 15/262 (5%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AF+ + K
Sbjct: 65 AHPQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFIMYCHKHE 123
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK+A+ EL++ E++ G+ + S RLFIG +PK +E KV E GV + +
Sbjct: 124 AKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKLKKREEIAKVTE----GVLDVIM 179
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D
Sbjct: 180 YASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVME 239
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
+ VK LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+
Sbjct: 240 T-VKILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVH 292
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+ + E++G LEV LAKP
Sbjct: 293 AMSNLNGTELEGSCLEVTLAKP 314
>gi|50346315|gb|AAT74916.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 595
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 152/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+RLM D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDF-NGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|50346317|gb|AAT74917.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 587
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 152/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+RLM D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDF-NGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|443720300|gb|ELU10098.1| hypothetical protein CAPTEDRAFT_167544 [Capitella teleta]
Length = 541
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 156/286 (54%), Gaps = 16/286 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +P+D E++L + E IG+++E+RLM D SG ++G+ FV + ++ AK
Sbjct: 54 PARGCEVFVGKIPRDCYEDELVPVFEKIGEIYELRLMMDF-SGSNRGYCFVMYTKRDDAK 112
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E+ KG+ + LS RLF+G +PKN E R ++ V GV + +
Sbjct: 113 RAVRELNNFEIRKGRFLGVCLSVDNCRLFVGGIPKNKQRHEIRTEMKKVTEGVVDVIVYP 172
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D S+
Sbjct: 173 SATDKAKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEQEVDED-VMSK 231
Query: 282 VKALYVKNI----PDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
VK LYV+N+ + + + G V +V RD+ F+H+ ER AL
Sbjct: 232 VKILYVRNLMLTTTEEFLETTFNQACGKEGAVERV------KKLRDYAFVHFKERDDALL 285
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY--SPGLVPTHLP 381
A++ I+G ++EV LAKP DK + + G +P H P
Sbjct: 286 AMEVINGQLIEGSMVEVTLAKP-VDKNSYVRYTRGGGRGAMPQHSP 330
>gi|3309585|gb|AAC26114.1| putative RNA binding protein RNP [Dictyostelium discoideum]
Length = 551
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 164/313 (52%), Gaps = 55/313 (17%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGD--VFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
+E+F GG+ K +EE+L ++ D V E+RLMKDK +GESKGF FV F + +
Sbjct: 91 NNEIFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKDKLTGESKGFGFVLFNDRSMCRN 150
Query: 164 AIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
ID+L+ K +KGK I LSE K +LFIGN+PK+ ++++F + + G+E+I+ + P
Sbjct: 151 VIDKLNGKSIKGKIIEVKLSENKRKLFIGNLPKDLSKEQFISIFNEKTEGIESIDFLMSP 210
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG--NTPTISWADPKSTP----DHSA 277
P++NRGF+F+ Y ++ AD +R+ + + KL T T++W+DP T +
Sbjct: 211 DQPNKNRGFAFIEYQDHYLADTARRILTASTVKLGDYITTLTVNWSDPDPTTLDPQNDPL 270
Query: 278 AASQVKALYVKNIPDN-----TSTEKIKELFQRHG-------------EVTKVVMPPG-- 317
++KA+Y++N+P N + T+ I ++ Q + + K+++P G
Sbjct: 271 ENKEIKAIYIRNLPLNHRNDLSITKIINDIIQENSLSILNNNNNNKDDIIEKIIIPQGAP 330
Query: 318 ------------------------KSGKRDFGFIHYAERSSALKAVKDTEK--YEIDGQV 351
+ KRD+ F+H R A + ++ E+ I+G+V
Sbjct: 331 TLEIINNLNNNLNNNNINNNNNSLNNSKRDYAFVHLKTRELAEEILRIHEEKPININGKV 390
Query: 352 LEVVLAKPQTDKK 364
L + AKP DKK
Sbjct: 391 LSLSFAKP-IDKK 402
>gi|313239224|emb|CBY14179.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 143/266 (53%), Gaps = 15/266 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVFIG +P+D E++L L E G V++ RLM D +G+++G+AF+SF A+
Sbjct: 164 PAVGAEVFIGKIPRDMFEDELVPLFEKCGLVWDFRLMMDPMTGQNRGYAFLSFVELSAAR 223
Query: 163 KAIDELHSKELKGKT-IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
K ++ E++ K + ++S+ NRLF+G++PK T+ E G+ + L
Sbjct: 224 KCVEMYDRFEIRSKRELHVTISQPNNRLFVGSIPKTKTKQEILDEFSKHTTGLTDVILYY 283
Query: 222 DPQNPS------RNRGFSFVLYYNNACADYSRQKMLNANFKLDGN-TPTISWADPKSTPD 274
+ + +NRGF F+ Y + A +R+++L+ K N T+ WADP +TP
Sbjct: 284 QVEEKNKGSGLQKNRGFCFLEYETHQAASQARRRLLSGRVKAWNNLIVTVDWADPINTPA 343
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSS 334
+VK LYVKN+ S + + + F GE+ KV +D+ F+H+ R
Sbjct: 344 DD-IMDKVKVLYVKNLATCVSEDIVSQTFAAFGEIEKV------KKLKDYAFVHFKNRDE 396
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQ 360
A A+ + + ++GQ +E+ LAKPQ
Sbjct: 397 ARSAMTELNGFNLEGQCIEICLAKPQ 422
>gi|50950169|ref|NP_001002955.1| RNA-binding protein 47 [Canis lupus familiaris]
gi|75075043|sp|Q9XSR3.1|RBM47_CANFA RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|5441611|emb|CAB46854.1| hypothetical protein [Canis lupus familiaris]
Length = 592
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 147/257 (57%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV++ K AK+A+
Sbjct: 72 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAKRAV 130
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 131 RELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 190
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 191 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 249
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A+ A+
Sbjct: 250 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVLAMNSL 303
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 304 NGTELEGSCLEVTLAKP 320
>gi|198430507|ref|XP_002127144.1| PREDICTED: similar to RNA-binding protein 47 (RNA-binding motif
protein 47) [Ciona intestinalis]
Length = 711
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 150/260 (57%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G+EVF+G +P+D E++L + E G ++E+RLM D + G+++G+AFV F +K AK
Sbjct: 108 PPRGAEVFVGKIPRDVFEDELVPVFETAGRIYEMRLMMDFD-GKNRGYAFVMFTAKSDAK 166
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ +L++ E+ KG+ + S RLF+G +PK +D+ + V GV + +
Sbjct: 167 GAVKKLNNYEIRKGRMLGVCYSVDNCRLFVGGIPKTKKKDDIFAEMTKVTEGVTDVIVYP 226
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D Q
Sbjct: 227 SASDKTKNRGFAFVEYDSHRAAAMARRKLIPGRIQLWGHPIAVDWAEPEQDVDDEIMG-Q 285
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +T+ + ++ +F + G V +V RD+ F+H++ R + ++A+
Sbjct: 286 VKVLYVRNLMLDTTEDTLQNVFSQFKPGSVERV------KKIRDYAFVHFSTREACIEAM 339
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
+ ID +EV LAKP
Sbjct: 340 EKINGTHIDQAEVEVTLAKP 359
>gi|74216343|dbj|BAE25115.1| unnamed protein product [Mus musculus]
Length = 377
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 145/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|326923245|ref|XP_003207849.1| PREDICTED: APOBEC1 complementation factor-like [Meleagris
gallopavo]
Length = 590
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 151/258 (58%), Gaps = 12/258 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ A+ AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEARNAI 113
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIG-NVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+L++ E++ G+ + S RLF+G + PK +E ++ V GV + +
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGDPPKTKKREEILAEMKKVTDGVVDVIVYPSA 173
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S VK
Sbjct: 174 ADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VK 232
Query: 284 ALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
LYV+N+ +T+ E I++ F + G V +V RD+ F+H+ +R A+ A+K
Sbjct: 233 ILYVRNLMLSTTEETIEKEFNNIKQGAVERV------KKIRDYAFVHFNKREDAVDAMKA 286
Query: 342 TEKYEIDGQVLEVVLAKP 359
+DG +EV LAKP
Sbjct: 287 LNGKVLDGSPIEVTLAKP 304
>gi|350587467|ref|XP_003482419.1| PREDICTED: RNA-binding protein 47-like [Sus scrofa]
Length = 522
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 147/257 (57%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|147905061|ref|NP_001086049.1| APOBEC1 complementation factor [Xenopus laevis]
gi|49522081|gb|AAH74127.1| MGC81834 protein [Xenopus laevis]
Length = 584
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 147/257 (57%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+FIG LP+D E++L LCE G ++E+R+M D +G ++G+AFV+F +++ A+ AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKTGKIYEMRMMMDF-NGNNRGYAFVTFTNRQDARDAI 113
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E + V GV + +
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILAEMRKVTDGVLDVIVYPSAA 173
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S VK
Sbjct: 174 DKAKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VKI 232
Query: 285 LYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E I++ F + G V +V RD+ F+H+ R+ A+ A+
Sbjct: 233 LYVRNLMLTTAEETIEKEFSSVKPGSVERV------KKIRDYAFVHFRNRADAVDAMNVL 286
Query: 343 EKYEIDGQVLEVVLAKP 359
IDG +EV LAKP
Sbjct: 287 NGKIIDGSPIEVTLAKP 303
>gi|118600907|gb|AAH34402.1| RBM47 protein [Homo sapiens]
gi|119613370|gb|EAW92964.1| RNA-binding protein, isoform CRA_a [Homo sapiens]
Length = 497
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|301606991|ref|XP_002933097.1| PREDICTED: probable RNA-binding protein 46-like [Xenopus (Silurana)
tropicalis]
Length = 533
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 147/256 (57%), Gaps = 11/256 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L L E G ++E RLM + SGE++G+AFV + +KE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPLFERAGKIYEFRLMME-FSGENRGYAFVMYTNKEEALLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I S RLFIG++P+ +++ + ++ V GV + + +
Sbjct: 120 MLNNYEIRQGKFIGVCASLDNCRLFIGSIPQEKRKEDILEEMKKVTEGVMDVIVCPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVTYESHRAAAMARRKLIPGTFQLWGRTIKVDWADPEKEVDEE-TMQKVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F R+ G V +V RD+ F+H+ R A+ A+ +
Sbjct: 239 YVRNLMMSTTEETIKAEFNRYKPGVVERV------KKIRDYAFVHFFRRDYAIAAMSEMN 292
Query: 344 KYEIDGQVLEVVLAKP 359
IDG +EV LAKP
Sbjct: 293 GRLIDGARIEVTLAKP 308
>gi|281342615|gb|EFB18199.1| hypothetical protein PANDA_019026 [Ailuropoda melanoleuca]
Length = 594
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKSEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFVSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|355782924|gb|EHH64845.1| hypothetical protein EGM_18166 [Macaca fascicularis]
Length = 605
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 153/275 (55%), Gaps = 24/275 (8%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKML-------------NANFKLDGNTPTISW 266
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + W
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGIPAPPSLVTVTPGRIQLWGHPIAVDW 228
Query: 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDF 324
A+P+ D +S VK LYV+N+ +TS E I++ F + G V +V RD+
Sbjct: 229 AEPEVEVDEDTMSS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDY 281
Query: 325 GFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359
F+H++ R A++A+K +DG +EV LAKP
Sbjct: 282 AFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 316
>gi|50346319|gb|AAT74918.1| truncated APOBEC-1 stimulating protein [Mus musculus]
Length = 384
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 152/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+RLM D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDF-NGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>gi|119613372|gb|EAW92966.1| RNA-binding protein, isoform CRA_c [Homo sapiens]
Length = 514
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|218199186|gb|EEC81613.1| hypothetical protein OsI_25123 [Oryza sativa Indica Group]
Length = 370
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 164/302 (54%), Gaps = 17/302 (5%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL +DA E+D+R + G++ EVR++ + +G++KG+ FV +R AKKAI E
Sbjct: 11 EVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAAQAKKAIAE 70
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
+ ++ GK R ++ +R+F+GN+ K W +++ K ++ +G ++++ L D NP
Sbjct: 71 FGNAKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNP 130
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
NRGF+F+ + A + +K+ N ++WA+P + PD A QVK+++
Sbjct: 131 VCNRGFAFLELETSRDARMAYKKLSQKNAFGKSLNIRVAWAEPLNDPDEKDA--QVKSIF 188
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIHYAERSSALKAVKDT 342
V IP + ++KE+F++HG++ VV MP K +RDF FI+Y R +A+ ++
Sbjct: 189 VDGIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAK--RRDFAFINYITREAAISCLESF 246
Query: 343 EKYEIDGQVLEVVLAKPQTDKKTEGTF--PYSPGLVPTHLPHAGYGGFAGTPYGSVGTGF 400
+K E ++ +K+ T PY P + H G+ Y +V + +
Sbjct: 247 DKEEFIRYPVQDYTHIYSGEKRPFSTLGDPYYPLRGHSCRRH------EGSTYTTVASSY 300
Query: 401 GV 402
GV
Sbjct: 301 GV 302
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 17/176 (9%)
Query: 77 HVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIG--DVF 134
H + +K A G + A+P +F+G + K +ED+ + IG ++
Sbjct: 60 HAAQAKKAIAEFGNAKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENID 119
Query: 135 EVRLMKDKES-GESKGFAFVSFRSKEFAKKAIDELHSKELKGKT--IRCSLSETKN---- 187
V L D + ++GFAF+ + A+ A +L K GK+ IR + +E N
Sbjct: 120 SVTLKSDSNNPVCNRGFAFLELETSRDARMAYKKLSQKNAFGKSLNIRVAWAEPLNDPDE 179
Query: 188 ------RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+F+ +P +W + +++ + G +E++ L +D + R R F+F+ Y
Sbjct: 180 KDAQVKSIFVDGIPTSWDHAQLKEIFKKHGK-IESVVLSRDMPSAKR-RDFAFINY 233
>gi|344279159|ref|XP_003411358.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Loxodonta
africana]
Length = 593
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 69 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 127
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 128 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 187
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 188 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 246
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 300
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 301 NGTELEGSCLEVTLAKP 317
>gi|301787079|ref|XP_002928955.1| PREDICTED: RNA-binding protein 47-like [Ailuropoda melanoleuca]
Length = 630
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 106 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKSEAKRAV 164
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 165 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 224
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 225 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 283
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 284 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFVSREDAVHAMNNL 337
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 338 NGTELEGSCLEVTLAKP 354
>gi|403300669|ref|XP_003941042.1| PREDICTED: RNA-binding protein 47 [Saimiri boliviensis boliviensis]
Length = 631
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|255581424|ref|XP_002531520.1| RNA binding protein, putative [Ricinus communis]
gi|223528873|gb|EEF30874.1| RNA binding protein, putative [Ricinus communis]
Length = 841
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 151/257 (58%), Gaps = 7/257 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+F+GGL ++A+EED+R + E IG+V EVRL ++ +SKG+AFV F +KE AK+++ E
Sbjct: 344 EIFVGGLDREATEEDVRRVFETIGEVVEVRLHRNLAMSKSKGYAFVKFANKEHAKRSLSE 403
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
+ + + GK + SE + LF+GN+ WT++ R+ ++D G GVE I L+ D Q+
Sbjct: 404 MKNPVICGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENITLVADVQHE 463
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
R+RGF+F+ + + +A Y R + + F T +++A+P PD A VK
Sbjct: 464 GRSRGFAFLEFSCHADAMHAYKRLQKPDVVFGHPERTAKVAFAEPIREPDPEVMA-HVKT 522
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDT 342
+++ +P + ++++E + +GE+ ++V+ S ++DFGF+ ++ +A+ ++
Sbjct: 523 VFLDGLPPHWDEDRVREQLRGYGEIMRIVLARNMSTAKRKDFGFVDFSSHEAAIACIERI 582
Query: 343 EKYEI-DGQVLEVVLAK 358
E+ DG V A+
Sbjct: 583 NNAELGDGNSKTRVKAR 599
>gi|20450941|gb|AAM21973.1| RNA-binding protein [Homo sapiens]
Length = 593
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|444513680|gb|ELV10430.1| RNA-binding protein 47 [Tupaia chinensis]
Length = 580
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 147/257 (57%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETMGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + + V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEVAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVLAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|296196676|ref|XP_002745942.1| PREDICTED: RNA-binding protein 47 isoform 1 [Callithrix jacchus]
Length = 594
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|410957713|ref|XP_003985469.1| PREDICTED: RNA-binding protein 47 isoform 1 [Felis catus]
Length = 589
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFVSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|410957715|ref|XP_003985470.1| PREDICTED: RNA-binding protein 47 isoform 2 [Felis catus]
Length = 626
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 107 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 165
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 166 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 225
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 226 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 284
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 285 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFVSREDAVHAMNNL 338
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 339 NGTELEGSCLEVTLAKP 355
>gi|219521533|gb|AAI43943.1| RNA binding motif protein 47 [Homo sapiens]
Length = 593
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 146/258 (56%), Gaps = 11/258 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKPQ 360
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKPM 319
>gi|160017954|sp|Q5R5P4.2|RBM47_PONAB RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|148833513|ref|NP_001092104.1| RNA-binding protein 47 isoform a [Homo sapiens]
gi|313104167|sp|A0AV96.2|RBM47_HUMAN RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|109074059|ref|XP_001095125.1| PREDICTED: RNA-binding protein 47 isoform 5 [Macaca mulatta]
gi|109074063|ref|XP_001095351.1| PREDICTED: RNA-binding protein 47 isoform 7 [Macaca mulatta]
gi|114593726|ref|XP_001145550.1| PREDICTED: RNA-binding protein 47 isoform 13 [Pan troglodytes]
gi|402869216|ref|XP_003898662.1| PREDICTED: RNA-binding protein 47 isoform 1 [Papio anubis]
gi|402869218|ref|XP_003898663.1| PREDICTED: RNA-binding protein 47 isoform 2 [Papio anubis]
gi|410038246|ref|XP_003950365.1| PREDICTED: RNA-binding protein 47 [Pan troglodytes]
gi|426344160|ref|XP_004038643.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gorilla gorilla
gorilla]
gi|426344162|ref|XP_004038644.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gorilla gorilla
gorilla]
gi|116496675|gb|AAI26262.1| RBM47 protein [Homo sapiens]
gi|313883194|gb|ADR83083.1| RNA binding motif protein 47 (RBM47), transcript variant 1
[synthetic construct]
gi|355687243|gb|EHH25827.1| RNA-binding motif protein 47 [Macaca mulatta]
gi|355749234|gb|EHH53633.1| RNA-binding motif protein 47 [Macaca fascicularis]
Length = 593
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|397524560|ref|XP_003832258.1| PREDICTED: RNA-binding protein 47 isoform 1 [Pan paniscus]
gi|397524562|ref|XP_003832259.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan paniscus]
Length = 593
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|332819357|ref|XP_001144567.2| PREDICTED: RNA-binding protein 47 isoform 1 [Pan troglodytes]
gi|402869222|ref|XP_003898665.1| PREDICTED: RNA-binding protein 47 isoform 4 [Papio anubis]
gi|426344164|ref|XP_004038645.1| PREDICTED: RNA-binding protein 47 isoform 3 [Gorilla gorilla
gorilla]
Length = 555
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 32 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 90
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 91 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 150
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 151 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 209
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 210 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 263
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 264 NGTELEGSCLEVTLAKP 280
>gi|221044912|dbj|BAH14133.1| unnamed protein product [Homo sapiens]
Length = 555
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 32 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 90
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 91 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 150
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 151 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 209
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 210 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 263
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 264 NGTELEGSCLEVTLAKP 280
>gi|332219026|ref|XP_003258659.1| PREDICTED: RNA-binding protein 47 isoform 1 [Nomascus leucogenys]
gi|441663629|ref|XP_004091690.1| PREDICTED: RNA-binding protein 47 [Nomascus leucogenys]
Length = 593
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|397524566|ref|XP_003832261.1| PREDICTED: RNA-binding protein 47 isoform 4 [Pan paniscus]
Length = 555
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 32 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 90
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 91 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 150
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 151 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 209
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 210 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 263
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 264 NGTELEGSCLEVTLAKP 280
>gi|197099430|ref|NP_001127604.1| RNA-binding protein 47 [Pongo abelii]
gi|55732443|emb|CAH92922.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|332219030|ref|XP_003258661.1| PREDICTED: RNA-binding protein 47 isoform 3 [Nomascus leucogenys]
Length = 555
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 32 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 90
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 91 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 150
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 151 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 209
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 210 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 263
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 264 NGTELEGSCLEVTLAKP 280
>gi|55727108|emb|CAH90310.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYAGAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|47209668|emb|CAF95095.1| unnamed protein product [Tetraodon nigroviridis]
Length = 677
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 147/260 (56%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+F+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK
Sbjct: 86 PQRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTEKHEAK 144
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL++ E++ G+ + S RLFIG +PK +E + + V GV + +
Sbjct: 145 RAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVIDVIVYA 204
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D +
Sbjct: 205 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 263
Query: 282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ TS E I+++F + G V +V RD+ F+H+ R A+ A+
Sbjct: 264 VKILYVRNLMMETSEETIRKVFSQWNPGCVERV------KKIRDYAFVHFNSRDDAVLAM 317
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
E++G +EV LAKP
Sbjct: 318 NQLNGTEVEGSCIEVTLAKP 337
>gi|260812203|ref|XP_002600810.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
gi|229286100|gb|EEN56822.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
Length = 477
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 148/266 (55%), Gaps = 12/266 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G LP+D E++L + E IG ++EVRLM D SG ++G+AFV + +KE AK
Sbjct: 53 PQRGCEVFVGKLPRDLYEDELVPVFETIGKIYEVRLMMD-FSGSNRGYAFVMYTNKEDAK 111
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ +L++ E+ KG+ + S RLF+G +PKN + E + + V GV + +
Sbjct: 112 RAVKQLNNYEIRKGRLLGVCPSVDNCRLFVGGIPKNKKKHEILEEMSKVTEGVVNVIVYP 171
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K++ +L G+ + WA+ +
Sbjct: 172 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQIAVDWAE-PEPEVDEEVMRK 230
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGE--VTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ T+ + IK+ F+ E VT+V RD+ F+HY R A+ A+
Sbjct: 231 VKVLYVRNLMVTTTEDDIKQAFEVGEEETVTRV------KKIRDYAFVHYKTREDAIAAM 284
Query: 340 KDTEKYEIDGQVLEVVLAKPQTDKKT 365
++G LEV AKP D+ T
Sbjct: 285 TAMNGSTLEGAKLEVTFAKP-VDRNT 309
>gi|297293557|ref|XP_001092238.2| PREDICTED: probable RNA-binding protein 46 [Macaca mulatta]
Length = 709
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 237 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIR 295
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 296 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 355
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 356 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 414
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 415 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 468
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 469 GKCIDGASIEVTLAKPVNKENT 490
>gi|149048270|gb|EDM00846.1| similar to hypothetical protein MGC27016 (predicted) [Rattus
norvegicus]
Length = 468
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|148683481|gb|EDL15428.1| mCG21951 [Mus musculus]
Length = 468
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFSKFKPGAVERV------KKLRDYAFVHFFHREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|296196678|ref|XP_002745943.1| PREDICTED: RNA-binding protein 47 isoform 2 [Callithrix jacchus]
Length = 525
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|300794578|ref|NP_001179648.1| probable RNA-binding protein 46 [Bos taurus]
gi|296478817|tpg|DAA20932.1| TPA: RNA binding motif protein 46 [Bos taurus]
gi|440907847|gb|ELR57939.1| Putative RNA-binding protein 46 [Bos grunniens mutus]
Length = 533
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGSVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|344279161|ref|XP_003411359.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Loxodonta
africana]
Length = 524
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 69 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 127
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 128 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 187
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 188 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 246
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 300
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 301 NGTELEGSCLEVTLAKP 317
>gi|168042168|ref|XP_001773561.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675100|gb|EDQ61599.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 309
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 149/250 (59%), Gaps = 8/250 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EV++GGL KD +EEDL+ L E G+V EVRLM++ ++G+++G+AFV + S AK+A +E
Sbjct: 53 EVYVGGLDKDTTEEDLKPLFEKAGEVVEVRLMRNPQTGKNRGYAFVRYSSAAMAKRAAEE 112
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + E++G+ SE + L +GN+ K+W ++ + ++ + +E + L++DPQ
Sbjct: 113 LGTIEIRGRECTAKPSEENDTLHLGNINKSWKKEMVMETLKSLCIERIEELTLMEDPQVE 172
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + + +A + + + +A F D + ++WA P PD SQVK+
Sbjct: 173 GLNRGFAFIEFSTHKDALEAFRKLQQPDAIFGAD-RSAKVAWAQPLYEPDED-TMSQVKS 230
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG--KSGKRDFGFIHYAERSSALKAVKDT 342
++V +P ++E F ++GE+ ++V+ + ++DFGF+++ ER +AL +
Sbjct: 231 VFVDGMPPTWEEVNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNFVERDAALACIDAL 290
Query: 343 EKYE-IDGQV 351
E IDG +
Sbjct: 291 NNTEIIDGDI 300
>gi|354474595|ref|XP_003499516.1| PREDICTED: probable RNA-binding protein 46 [Cricetulus griseus]
Length = 533
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|344239872|gb|EGV95975.1| putative RNA-binding protein 46 [Cricetulus griseus]
Length = 503
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 75 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 133
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 134 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 193
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 194 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 252
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 253 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 306
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 307 GKCIDGASIEVTLAKPVNKENT 328
>gi|119625308|gb|EAX04903.1| hypothetical protein MGC27016, isoform CRA_b [Homo sapiens]
gi|193785107|dbj|BAG54260.1| unnamed protein product [Homo sapiens]
Length = 470
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|297674548|ref|XP_002815285.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pongo abelii]
Length = 533
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|226423939|ref|NP_001139800.1| probable RNA-binding protein 46 [Mus musculus]
gi|215275534|sp|P86049.1|RBM46_MOUSE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 533
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFSKFKPGAVERV------KKLRDYAFVHFFHREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|432918730|ref|XP_004079638.1| PREDICTED: probable RNA-binding protein 46-like [Oryzias latipes]
Length = 591
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 150/262 (57%), Gaps = 11/262 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L L E G ++E RLM + SGE++G+AFV + S+E A +AI
Sbjct: 72 GCEVFVGKVPRDMYEDELVPLFESAGRIYEFRLMMEF-SGENRGYAFVMYTSREEAVRAI 130
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
L E++ G+ I +S RLFIG++P++ ++E + + V GV + +
Sbjct: 131 QMLDGYEVRPGRFIGVCVSLDNCRLFIGSIPRDRRKEEILEEMRKVTDGVVDVIVYPSSS 190
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +RNRGF+FV Y ++ A +R+K++ F+L G+ + WA+P+ + A +V+
Sbjct: 191 DRNRNRGFAFVEYESHKTAAMARRKLIPGTFQLWGHPIQVDWAEPEKDMEEE-AMQRVRV 249
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ +T+ E ++ F R G V +V D+ F+H+ RS AL +
Sbjct: 250 LYVRNLMLDTTEETLRREFSRFKPGSVERV------KKLTDYAFVHFRSRSEALATLAVM 303
Query: 343 EKYEIDGQVLEVVLAKPQTDKK 364
+IDG +EV LAKP +K+
Sbjct: 304 NGVQIDGTTVEVSLAKPTGNKE 325
>gi|332820527|ref|XP_003310593.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Pan
troglodytes]
Length = 533
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|410956690|ref|XP_003984972.1| PREDICTED: probable RNA-binding protein 46 [Felis catus]
Length = 533
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKEST 314
>gi|301787307|ref|XP_002929069.1| PREDICTED: probable RNA-binding protein 46-like [Ailuropoda
melanoleuca]
gi|281342850|gb|EFB18434.1| hypothetical protein PANDA_019160 [Ailuropoda melanoleuca]
Length = 533
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|21450675|ref|NP_659416.1| probable RNA-binding protein 46 [Homo sapiens]
gi|74760436|sp|Q8TBY0.1|RBM46_HUMAN RecName: Full=Probable RNA-binding protein 46; AltName:
Full=Cancer/testis antigen 68; Short=CT68; AltName:
Full=RNA-binding motif protein 46
gi|20306894|gb|AAH28588.1| RNA binding motif protein 46 [Homo sapiens]
gi|119625307|gb|EAX04902.1| hypothetical protein MGC27016, isoform CRA_a [Homo sapiens]
gi|325463385|gb|ADZ15463.1| RNA binding motif protein 46 [synthetic construct]
Length = 533
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|355687676|gb|EHH26260.1| hypothetical protein EGK_16179 [Macaca mulatta]
gi|355749630|gb|EHH54029.1| hypothetical protein EGM_14765 [Macaca fascicularis]
Length = 533
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|395834586|ref|XP_003790279.1| PREDICTED: probable RNA-binding protein 46 [Otolemur garnettii]
Length = 533
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|410915937|ref|XP_003971443.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Takifugu rubripes]
Length = 598
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 147/265 (55%), Gaps = 43/265 (16%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G+E+F+G +P+D E++L L E G ++++RLM D SG ++G+AFV+F SKE A+
Sbjct: 158 PPVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLCNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYL 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
PQ+ S+NRGF F+ Y DH AA Q
Sbjct: 278 QPQDKSKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ ++ + E +++ F +G + +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANSVTEEILEKSFSEYGNLERV------KKLKDYAFIHFEERDGAVKALEE 355
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
E++G+ +E+V AKP K+ E
Sbjct: 356 MNGKELEGEPIEIVFAKPPDQKRKE 380
>gi|332217539|ref|XP_003257916.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Nomascus
leucogenys]
Length = 470
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKLGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|208973286|ref|NP_001129189.1| probable RNA-binding protein 46 [Rattus norvegicus]
Length = 533
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|57096861|ref|XP_532699.1| PREDICTED: probable RNA-binding protein 46 [Canis lupus familiaris]
Length = 533
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|332219028|ref|XP_003258660.1| PREDICTED: RNA-binding protein 47 isoform 2 [Nomascus leucogenys]
Length = 524
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|126331293|ref|XP_001366441.1| PREDICTED: probable RNA-binding protein 46-like [Monodelphis
domestica]
gi|395542497|ref|XP_003773166.1| PREDICTED: probable RNA-binding protein 46 [Sarcophilus harrisii]
Length = 533
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKEST 314
>gi|426246909|ref|XP_004017229.1| PREDICTED: probable RNA-binding protein 46 [Ovis aries]
Length = 533
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKRKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGTVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|114596513|ref|XP_528865.2| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pan
troglodytes]
gi|397504054|ref|XP_003822624.1| PREDICTED: probable RNA-binding protein 46 [Pan paniscus]
gi|402870690|ref|XP_003899339.1| PREDICTED: probable RNA-binding protein 46 [Papio anubis]
Length = 470
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|332217537|ref|XP_003257915.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Nomascus
leucogenys]
Length = 533
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKLGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|311262420|ref|XP_003129173.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Sus scrofa]
Length = 533
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|344291747|ref|XP_003417592.1| PREDICTED: probable RNA-binding protein 46 [Loxodonta africana]
Length = 533
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSIMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|397524564|ref|XP_003832260.1| PREDICTED: RNA-binding protein 47 isoform 3 [Pan paniscus]
Length = 524
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|241606359|ref|XP_002405718.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215500664|gb|EEC10158.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 411
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 143/245 (58%), Gaps = 12/245 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVFIG LP+D E++L L E +G ++E+RLM D +G ++G+AF ++ ++E A+
Sbjct: 61 PQRGCEVFIGKLPRDFFEDELVPLLETVGPIYELRLMMDF-AGSNRGYAFATYTNREDAR 119
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL KE++ GK I S RLF+G +P+ T ++ + V GV + L
Sbjct: 120 RAVRELDEKEIRRGKRIGVCKSTDNCRLFVGGIPRTKTREDVFSEMSRVTEGVVNVILYT 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL-DGNTPTISWADPKSTPDHSAAAS 280
+ +RNRGF+FV Y ++ A +R+KM+ KL +G+ + WA+P+ D S
Sbjct: 180 SVMDKTRNRGFAFVEYTDHKTAAVARRKMIPGKMKLWNGHDVAVDWAEPEPQVDED-TMS 238
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
+V LYV+N+ +T+ ++++E+F +G +V+KV RDF FIHY R A A
Sbjct: 239 KVMVLYVRNLVLSTTEDELREVFSLNGSLKVSKV------KKIRDFAFIHYRSREEATTA 292
Query: 339 VKDTE 343
++ +
Sbjct: 293 LEAMQ 297
>gi|194380344|dbj|BAG63939.1| unnamed protein product [Homo sapiens]
Length = 485
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|148833511|ref|NP_061900.2| RNA-binding protein 47 isoform b [Homo sapiens]
Length = 524
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|109074069|ref|XP_001094904.1| PREDICTED: RNA-binding protein 47 isoform 3 [Macaca mulatta]
gi|114593728|ref|XP_001144637.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan troglodytes]
gi|402869220|ref|XP_003898664.1| PREDICTED: RNA-binding protein 47 isoform 3 [Papio anubis]
gi|426344166|ref|XP_004038646.1| PREDICTED: RNA-binding protein 47 isoform 4 [Gorilla gorilla
gorilla]
gi|119613373|gb|EAW92967.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
gi|119613375|gb|EAW92969.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
Length = 524
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|335293716|ref|XP_003357034.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Sus scrofa]
Length = 485
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|431901230|gb|ELK08296.1| Putative RNA-binding protein 46 [Pteropus alecto]
Length = 699
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 287 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 345
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 346 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 405
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 406 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 464
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 465 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 518
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 519 GKCIDGASIEVTLAKPVNKENT 540
>gi|296195353|ref|XP_002745373.1| PREDICTED: probable RNA-binding protein 46 [Callithrix jacchus]
Length = 485
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGTVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKFIDGASIEVTLAKPVNKENT 314
>gi|327274033|ref|XP_003221783.1| PREDICTED: probable RNA-binding protein 46-like [Anolis
carolinensis]
Length = 514
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNRDDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKEST 314
>gi|158706381|sp|Q4R2Z0.2|RBM46_MACFA RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 485
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|168060688|ref|XP_001782326.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666185|gb|EDQ52846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 351
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 152/257 (59%), Gaps = 7/257 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EV++GGL KD +EEDL+ L + G+V E+RLM++ ++G++KGFAF+ + S AK+A ++
Sbjct: 57 EVYVGGLDKDTTEEDLKSLFKKAGEVIEIRLMRNPQTGKNKGFAFIRYASAAMAKRATED 116
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
+ E++G+ SE + L +GN+ K+W ++ + ++ + +E + L++DPQ
Sbjct: 117 FETVEIRGRQCTAKPSEENDTLHLGNINKSWKKEMVLETLKSLSIESIEELTLMEDPQVE 176
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + + +A + + + +A F + + ++WA P PD SQVK+
Sbjct: 177 GVNRGFAFIEFSTHKDALDAFRKLQQPDAIFGTE-RSAKVAWAQPLYEPDED-TMSQVKS 234
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG--KSGKRDFGFIHYAERSSALKAVKDT 342
++V +P ++E F ++GE+ ++V+ + ++DFGF++Y ER++AL +
Sbjct: 235 VFVDGMPLTWEEGNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNYMERNAALTCIDAL 294
Query: 343 EKYEIDGQVLEVVLAKP 359
EI ++V+ + P
Sbjct: 295 NNTEIIDGDMKVLFSWP 311
>gi|403272285|ref|XP_003928003.1| PREDICTED: probable RNA-binding protein 46 [Saimiri boliviensis
boliviensis]
Length = 533
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSAID 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKFIDGASIEVTLAKPVNKENT 314
>gi|194208379|ref|XP_001500866.2| PREDICTED: probable RNA-binding protein 46 [Equus caballus]
Length = 532
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ G+ I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGRFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|348582238|ref|XP_003476883.1| PREDICTED: probable RNA-binding protein 46 [Cavia porcellus]
Length = 540
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 67 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 125
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 126 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 185
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 186 KTKNRGFAFVKYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 244
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
+V+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 245 FVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMS 298
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 299 GKCIDGASIEVTLAKPVNKEST 320
>gi|351705983|gb|EHB08902.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 670
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 154/259 (59%), Gaps = 9/259 (3%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VF+G +P+D E++L L E G ++++RLM D SG+++G+A ++F KE A++A+
Sbjct: 226 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYALITFCGKEAAQEAVKLC 285
Query: 169 HSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 286 DSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK 345
Query: 228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYV 287
+NR F F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+V
Sbjct: 346 KNR-FCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLFV 403
Query: 288 KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI 347
+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ + EI
Sbjct: 404 RNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGKEI 457
Query: 348 DGQVLEVVLAKPQTDKKTE 366
+G+ +E+VLAKP K+ E
Sbjct: 458 EGEEIEIVLAKPPDKKRKE 476
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 127/263 (48%), Gaps = 43/263 (16%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
+A+ +F+G +P++ EDE + E GP + + L+ D
Sbjct: 221 EAV---------------------KLVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMD 258
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAAASQ 281
P + +NRG++ + + A + + + + + IS A+ +
Sbjct: 259 PLS-GQNRGYALITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNR----------- 306
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGE-VTKVVM--PPGKSGKRDFGFIHYAERSSALKA 338
L+V +IP N + E I E F + E + V++ P K F F+ Y + SA +A
Sbjct: 307 ---LFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRFCFLEYEDHKSAAQA 363
Query: 339 VKD--TEKYEIDGQVLEVVLAKP 359
+ + K ++ G V+ V A P
Sbjct: 364 RRRLMSGKVKVWGNVVTVEWADP 386
>gi|7020253|dbj|BAA91049.1| unnamed protein product [Homo sapiens]
Length = 524
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 145/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G +E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRTYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>gi|432093052|gb|ELK25342.1| Putative RNA-binding protein 46 [Myotis davidii]
Length = 533
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ + IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTAEDTIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>gi|118404976|ref|NP_001072501.1| probable RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
gi|123905873|sp|Q0P4R6.1|RBM46_XENTR RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|112419351|gb|AAI21935.1| RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
Length = 534
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 147/256 (57%), Gaps = 11/256 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E+ L L G ++E RLM + SGE++G+AFV + +KE A AI
Sbjct: 61 CEVFVGKIPRDMYEDKLVPLFARAGKIYEFRLMME-FSGENRGYAFVMYTNKEEALLAIR 119
Query: 167 ELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E+ +GK I +S RLFIG++P+ ++E + ++ V GV + + +
Sbjct: 120 MLNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEEILEEMKKVTEGVMDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV+Y ++ A +R+K++ F+L G+T ++WA P+ D +VK L
Sbjct: 180 KTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGHTIKVAWASPEKEVDEE-TMQKVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F R+ G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMMSTTEETIKAEFNRYKPGVVERV------KKIRDYAFVHFFRRDYAIAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKP 359
IDG +EV LAKP
Sbjct: 293 GRLIDGARIEVTLAKP 308
>gi|426364774|ref|XP_004049471.1| PREDICTED: APOBEC1 complementation factor [Gorilla gorilla gorilla]
Length = 548
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 142/241 (58%), Gaps = 11/241 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 K 340
K
Sbjct: 284 K 284
>gi|66812128|ref|XP_640243.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|37693753|gb|AAQ98887.1| RNA-binding protein [Dictyostelium discoideum]
gi|60468259|gb|EAL66268.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 551
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 162/313 (51%), Gaps = 55/313 (17%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGD--VFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
+E+F GG+ K +EE+L ++ D V E+RLMKDK +GESKGF FV F + +
Sbjct: 91 NNEIFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKDKLTGESKGFGFVLFNDRSMCRN 150
Query: 164 AIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
ID+L+ K +KGK I SE K +LFIGN+PK+ ++++F + + G+E+I+ + P
Sbjct: 151 VIDKLNGKSIKGKIIEVKQSENKRKLFIGNLPKDLSKEQFISIFNEKTEGIESIDFLMSP 210
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG--NTPTISWADPKSTP----DHSA 277
P++NRGF+F+ Y ++ AD +R+ + + KL T T++W+DP T +
Sbjct: 211 DQPNKNRGFAFIEYQDHYLADTARRILTASTVKLGDYITTLTVNWSDPDPTTLDPQNDPL 270
Query: 278 AASQVKALYVKNIPDN-----TSTEKIKELFQR-------------HGEVTKVVMPPG-- 317
++KA+Y++N+P N + T+ I ++ Q + K+++P G
Sbjct: 271 ENKEIKAIYIRNLPLNHRNDLSITKIINDIIQENSLSLLNNNNNNKDDIIEKIIIPQGAP 330
Query: 318 ------------------------KSGKRDFGFIHYAERSSALKAVKDTEK--YEIDGQV 351
+ KRD+ F+H R A + ++ E+ I+G+V
Sbjct: 331 TLEIINNLNNNLNNNNINNNNNSLNNSKRDYAFVHLKTRELAEEILRIHEEKPININGKV 390
Query: 352 LEVVLAKPQTDKK 364
L + AKP DKK
Sbjct: 391 LSLSFAKP-IDKK 402
>gi|405972362|gb|EKC37135.1| Heterogeneous nuclear ribonucleoprotein Q [Crassostrea gigas]
Length = 628
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 150/264 (56%), Gaps = 10/264 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVF G +PKD E++L L E G ++++RLM D + ++G+ F++F +KE A+
Sbjct: 154 PPPGCEVFCGKIPKDVFEDELIPLFEKCGKIWDLRLMMDPLTQFNRGYCFITFCTKEGAE 213
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A +L + +K GK I+ ++S RLF+GN+PK+ ++DE + G+ + + +
Sbjct: 214 EAT-KLDNYAIKPGKNIKVNISVANQRLFVGNIPKSKSKDEIMEEFSKKTEGLVDVIIYR 272
Query: 222 DPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
+ + +NRGF+F+ Y ++ A +++K+ K+ + WADP PD S
Sbjct: 273 SAEKENQKNRGFAFLEYDSHKSASTAKRKLSTGRLKVWNCDVIVDWADPVDNPDDE-TMS 331
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LYV+N+ + + +KE F G++ + +D+GFIH+ +R A+KA++
Sbjct: 332 KVKVLYVRNLTSEVTEDIMKEKFGEFGKIERA------KKVKDYGFIHFEDRDDAIKAMQ 385
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKK 364
+I +EV LAKP ++ K
Sbjct: 386 AMNGQKIGKLEIEVSLAKPPSENK 409
>gi|349585036|ref|NP_001073493.2| probable RNA-binding protein 46 [Danio rerio]
Length = 523
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 149/257 (57%), Gaps = 11/257 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + ++E A++AI
Sbjct: 59 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMMEF-SGENRGYAFVMYTTREKAQRAIQL 117
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
L + E++ GK I +S RLFIG++PK+ ++E ++ + V GV + + +
Sbjct: 118 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYPSAVDR 177
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF+FV Y ++ A +R+K++ F+L G+T + WA+P+ D +V+ LY
Sbjct: 178 MKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEE-TMQRVRVLY 236
Query: 287 VKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344
V+N+ +T+ E ++ F + G V +V D+ FIH+ R AL A++
Sbjct: 237 VRNLMLSTTEETLRSEFSQLKPGSVERV------KKLTDYAFIHFYNREDALTALESMNG 290
Query: 345 YEIDGQVLEVVLAKPQT 361
IDG +EV LAKP +
Sbjct: 291 KVIDGSPIEVTLAKPAS 307
>gi|224097146|ref|XP_002310851.1| predicted protein [Populus trichocarpa]
gi|222853754|gb|EEE91301.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 142/237 (59%), Gaps = 6/237 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+F+GGL +DA+EEDLR + E IG+V EVRL K+ + +KG+AFV F +K K+A+ E
Sbjct: 27 EIFVGGLDRDATEEDLRKVFEKIGEVVEVRLHKNLSTNRNKGYAFVKFANKGHVKRALSE 86
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
+ + ++GK + SE + LF+GN+ WT++ R+ ++D G GVE I ++ D Q+
Sbjct: 87 MKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENITVVPDAQHE 146
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
R+RGF+F+ + + +A Y R + + F T +++++P PD A QVK
Sbjct: 147 GRSRGFAFLEFACHTDAMLAYKRLQKPDVVFGHPERTAKVAFSEPIREPDPEIMA-QVKT 205
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAV 339
+++ +P + + ++E + +GE+ ++V+ S ++DFGF+ ++ +A+ +
Sbjct: 206 IFLDGLPPHWDEDHVRECVKGYGEIVRIVLARNMSTAKRKDFGFVDFSTHEAAVACI 262
>gi|123884311|sp|Q08BH5.1|RBM46_DANRE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|115528134|gb|AAI24721.1| Zgc:153695 [Danio rerio]
Length = 510
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 149/257 (57%), Gaps = 11/257 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + ++E A++AI
Sbjct: 46 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMMEF-SGENRGYAFVMYTTREKAQRAIQL 104
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
L + E++ GK I +S RLFIG++PK+ ++E ++ + V GV + + +
Sbjct: 105 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYPSAVDR 164
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF+FV Y ++ A +R+K++ F+L G+T + WA+P+ D +V+ LY
Sbjct: 165 MKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEE-TMQRVRVLY 223
Query: 287 VKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344
V+N+ +T+ E ++ F + G V +V D+ FIH+ R AL A++
Sbjct: 224 VRNLMLSTTEETLRSEFSQLKPGSVERV------KKLTDYAFIHFYNREDALTALESMNG 277
Query: 345 YEIDGQVLEVVLAKPQT 361
IDG +EV LAKP +
Sbjct: 278 KVIDGSPIEVTLAKPAS 294
>gi|449432380|ref|XP_004133977.1| PREDICTED: uncharacterized protein LOC101208921 [Cucumis sativus]
Length = 788
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 194/356 (54%), Gaps = 24/356 (6%)
Query: 8 EDRVDLEEDNYMEEMDDD-----VEEQVEEDPEEE--GGDGNFEENDDDEEYDHSKAGAS 60
++R+DLE+++ E D+D E+++E++ +E G+G E+N DEE D +
Sbjct: 126 DERLDLEDNDPESEPDEDGGFEYDEKEIEQEDVQEVVDGEGEPEDNVGDEEGDMVEEDVE 185
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSE--VFIGGLPKDA 118
+ + E DDD E+ E A + + ++D+H +++ E VF+GGL KD
Sbjct: 186 DAQEDLEGE--DDDQQGGEDHEH--AGMVDADEDEHHEVVKERRKRKEFEVFVGGLDKDV 241
Query: 119 SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178
EEDL+ + +G+V EVRLM + ++ ++KGFAF+ F + E AK+A+ EL + + GK
Sbjct: 242 KEEDLKKVFSAVGEVTEVRLMMNPQTKKNKGFAFLRFATVEEAKRAVSELKNPVINGKQC 301
Query: 179 RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVLY 237
+ S+ + LF+GN+ K W +D ++ ++ G VE + L++D N NRGF+F+ +
Sbjct: 302 GVTPSQDSDTLFLGNICKTWKKDALKEKLKHYGVDNVEDLTLVEDSNNEGSNRGFAFLEF 361
Query: 238 --YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTS 295
++A + R + + F +D +S+AD P A QVK ++V ++P +
Sbjct: 362 SSRSDAMDAFKRLQKRDVVFGVD-RPAKVSFADSFIDPGDEIMA-QVKTVFVDSLPASWD 419
Query: 296 TEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI 347
E ++ L +++GE+ K+ MP K ++DFGF+ + +A+ K E+
Sbjct: 420 EEFVRGLLKKYGEIEKIELARNMPSAK--RKDFGFVTFDTHDAAVSCAKSINNSEL 473
>gi|196005657|ref|XP_002112695.1| hypothetical protein TRIADDRAFT_2319 [Trichoplax adhaerens]
gi|190584736|gb|EDV24805.1| hypothetical protein TRIADDRAFT_2319, partial [Trichoplax
adhaerens]
Length = 288
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 134/257 (52%), Gaps = 7/257 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP E++IG +P DA E++L L + G ++E+RLM D SG ++G+AF+S+ +KE A
Sbjct: 31 PPQDCEIYIGKIPHDALEDELIPLLQTCGKIYELRLMIDPASGHNRGYAFLSYTTKEAAN 90
Query: 163 KAIDELHSKELKGKTIRCSLSETKN-RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+ + H ++ + T N RLFI +PK ++E + G+ + +
Sbjct: 91 QCVRRYHGYSIRKDKPLTVIHSTPNVRLFISPIPKYMNKEEIYNKFSKLSDGLTEVIVYP 150
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
DP + RGF+F+ Y ++ A Y+R+K++ L G + WA+ P ++
Sbjct: 151 DPDAKDKIRGFAFLEYVDHKAATYARRKLITDTVSLSGKVINVEWAESSKEPKDHVVGNK 210
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK +Y NI ++ + + + F ++G + ++ D+ FI +A R SALKA++
Sbjct: 211 VKEVYCGNIAEHITEDTLNTAFLQYGSIERI------KKLHDYAFICFASRESALKAIEG 264
Query: 342 TEKYEIDGQVLEVVLAK 358
I+G ++V LAK
Sbjct: 265 VRGTVINGCKVDVQLAK 281
>gi|357161949|ref|XP_003579258.1| PREDICTED: uncharacterized protein LOC100834061 [Brachypodium
distachyon]
Length = 668
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 151/270 (55%), Gaps = 17/270 (6%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+EVF+GGLP+ A+E LR++ P G++ ++R+MKD ++G SKGF FV F +E A A
Sbjct: 69 GTEVFVGGLPRSATEGTLREVFSPCGEIVDLRIMKD-QNGVSKGFGFVRFAERECAYTAK 127
Query: 166 DELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK---- 221
+ + EL+GK + LS ++ LF GN+ K W+ +EF ++I V +++L
Sbjct: 128 RQKNGIELQGKRLAVDLSLDQDTLFFGNLCKEWSVEEFEELIHKTFKDVISVDLATASNL 187
Query: 222 DPQNPSR--NRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAA 278
D R NRGF+FV + ++ A + +F L G P I+WA+ +S D +
Sbjct: 188 DSSTSKRRLNRGFAFVRFSSHGAAARVLRIGSRTDFLLGGVLHPAINWAERESNVD-AGE 246
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
+++K +V N+P N + + +K+LF R GEV +V + + G+ GFIH+ RS A
Sbjct: 247 MAKIKTAFVGNLPANVNEDYLKKLFGRFGEVVRVAV--SRKGEYPVGFIHFGSRSELDNA 304
Query: 339 VKDTEKYEIDGQ------VLEVVLAKPQTD 362
+K+ + + G ++V +A+P +
Sbjct: 305 IKEMDGKTVSGPDRGPAFKIQVSVARPAVE 334
>gi|351713895|gb|EHB16814.1| Putative RNA-binding protein 46 [Heterocephalus glaber]
Length = 528
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 147/263 (55%), Gaps = 11/263 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + KE A+ AI
Sbjct: 60 GCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTMKEEAQLAI 118
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + +
Sbjct: 119 RILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSAT 178
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ ++NRGF+FV Y ++ +R+K++ F+L G+T + WADP+ D +VK
Sbjct: 179 DKTKNRGFAFVKYESHREPAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKV 237
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
L+V+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 238 LFVRNLMISTTEETIKGEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVM 291
Query: 343 EKYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 292 SGKCIDGASIEVTLAKPVNKEST 314
>gi|359489218|ref|XP_002270340.2| PREDICTED: uncharacterized protein LOC100232913 [Vitis vinifera]
gi|297734640|emb|CBI16691.3| unnamed protein product [Vitis vinifera]
Length = 812
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E+DLR + +G+V EVRLM + ++ ++KGFAF+ F + E AK+A+ E
Sbjct: 233 EVFVGGLDKDATEDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRAVTE 292
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + + GK + S+ + LF+GN+ K WT++ ++ ++ G VE + L++D N
Sbjct: 293 LKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNE 352
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + ++A + R + + F +D T +S+AD P A QVK
Sbjct: 353 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVD-RTAKVSFADSFIDPGDEIMA-QVKT 410
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIHYAERSSALKAVK 340
+++ +P + ++++EL +++GE+ K+ MP K ++DFGF+ + +A+ K
Sbjct: 411 VFIDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAK--RKDFGFVTFDTHDAAVTCAK 468
Query: 341 DTEKYEI 347
E+
Sbjct: 469 SINNAEL 475
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 34/209 (16%)
Query: 144 SGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEF 203
+GE + A + A DE H + K + R +F+G + K+ TED+
Sbjct: 202 AGELQEHAEMV--------DAEDEEHHEVFKERRKRKEFE-----VFVGGLDKDATEDDL 248
Query: 204 RKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263
RKV VG V + L+ +PQ +N+GF+F+ + A + ++ N P
Sbjct: 249 RKVFSQVGE-VTEVRLMMNPQT-KKNKGFAFLRFATVEQAKRAVTELKN---------PV 297
Query: 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG-----EVTKVVMPPGK 318
++ TP + L++ NI + E +KE + +G ++T V +
Sbjct: 298 VNGKQCGVTPSQDS-----DTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNE 352
Query: 319 SGKRDFGFIHYAERSSALKAVKDTEKYEI 347
R F F+ ++ RS A+ A K +K ++
Sbjct: 353 GMNRGFAFLEFSSRSDAMDAFKRLQKRDV 381
>gi|156377726|ref|XP_001630797.1| predicted protein [Nematostella vectensis]
gi|156217825|gb|EDO38734.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 149/265 (56%), Gaps = 14/265 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+G+EVFIG +P+D E++L L E G++ E RL D +G +KGFAF +F + A +A
Sbjct: 108 SGTEVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTKQTSAYQA 167
Query: 165 IDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTED----EFRKVIEDVGPGVETIEL 219
I L+ K+++ G+ + S + +RLF+ +PK +++ EF KV D+ V +
Sbjct: 168 ITTLNDKDIRPGRRLAICKSRSNSRLFVKGIPKRKSKEEIFQEFSKVTTDL-QDVIVYQS 226
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAA 278
+ NRGF F+ Y N + + + ++ G ++WA+ + PD+ A
Sbjct: 227 CDQGNHGDLNRGFVFLEYANYIAGASALHRFTDGKVRIWGKVLEAVTWAEAREIPDY-AV 285
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
S+VK++YV+N+P S ++K +F ++G++ KV RD+GF+++A+R SA++A
Sbjct: 286 MSKVKSIYVRNVPLPMSETQLKAVFTKYGQIEKV------RKIRDYGFVYFAKRESAVQA 339
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDK 363
+ IDG LEV LA PQ+ +
Sbjct: 340 IDGINGAYIDGCKLEVSLAIPQSSR 364
>gi|349603648|gb|AEP99431.1| Heteroproteinous nuclear ribonucleoprotein Q-like protein, partial
[Equus caballus]
Length = 367
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 132/211 (62%), Gaps = 2/211 (0%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV 312
VK L+V+N+ + + E +++ F + G++ +V
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV 367
>gi|212274617|ref|NP_001130787.1| uncharacterized protein LOC100191891 [Zea mays]
gi|194690114|gb|ACF79141.1| unknown [Zea mays]
gi|414868618|tpg|DAA47175.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 605
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 159/286 (55%), Gaps = 22/286 (7%)
Query: 89 GEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESK 148
G DE+D+ + G+EVF+GGLP+ A+E LR++ G++ + R+MKD +SG SK
Sbjct: 7 GFDEQDRRTE------KGTEVFVGGLPRSATESTLREIFSSCGEIIDARIMKD-QSGHSK 59
Query: 149 GFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIE 208
G+ FV F +++A A + + E++GK + LS ++ +F GN+ K WT +EF ++I
Sbjct: 60 GYGFVRFAKRDYANTAKRQKNGIEVQGKRLVVELSMDQDTVFFGNLCKEWTLEEFEELIH 119
Query: 209 DVGPGVETIEL-----IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL-DGNTP 262
V +++L + + NRGF FV + ++A A + +F L D P
Sbjct: 120 KAFKDVVSVDLAMASNLGSSNKKNINRGFGFVRFSSHAAAARVIRIGSRTDFMLGDILHP 179
Query: 263 TISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR 322
I+WAD +S D A ++K+ ++ N+P++ + E +++LF + GEV +V + + G+
Sbjct: 180 AINWADKESHLDPDEMA-KMKSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAI--SRKGQC 236
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQ------VLEVVLAKPQTD 362
F+H+A+RS A+++ + + G ++V +A+P D
Sbjct: 237 PVAFVHFAKRSELENAIEEMDGKTVRGPGRGPSFKIQVSVARPTAD 282
>gi|414868617|tpg|DAA47174.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 609
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 159/286 (55%), Gaps = 22/286 (7%)
Query: 89 GEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESK 148
G DE+D+ + G+EVF+GGLP+ A+E LR++ G++ + R+MKD +SG SK
Sbjct: 7 GFDEQDRRTE------KGTEVFVGGLPRSATESTLREIFSSCGEIIDARIMKD-QSGHSK 59
Query: 149 GFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIE 208
G+ FV F +++A A + + E++GK + LS ++ +F GN+ K WT +EF ++I
Sbjct: 60 GYGFVRFAKRDYANTAKRQKNGIEVQGKRLVVELSMDQDTVFFGNLCKEWTLEEFEELIH 119
Query: 209 DVGPGVETIEL-----IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL-DGNTP 262
V +++L + + NRGF FV + ++A A + +F L D P
Sbjct: 120 KAFKDVVSVDLAMASNLGSSNKKNINRGFGFVRFSSHAAAARVIRIGSRTDFMLGDILHP 179
Query: 263 TISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR 322
I+WAD +S D A ++K+ ++ N+P++ + E +++LF + GEV +V + + G+
Sbjct: 180 AINWADKESHLDPDEMA-KMKSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAI--SRKGQC 236
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQ------VLEVVLAKPQTD 362
F+H+A+RS A+++ + + G ++V +A+P D
Sbjct: 237 PVAFVHFAKRSELENAIEEMDGKTVRGPGRGPSFKIQVSVARPTAD 282
>gi|449266622|gb|EMC77664.1| putative RNA-binding protein 46, partial [Columba livia]
Length = 467
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 149/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIK 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK +DE ++ V GV + + + +
Sbjct: 120 FLNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKDEILNEMKKVTEGVVDVIVYPNATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R++++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRRLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMMSTTEETIKAEFNKFKPGVVERV------KKLRDYAFVHFFHREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKEST 314
>gi|255571057|ref|XP_002526479.1| RNA binding protein, putative [Ricinus communis]
gi|223534154|gb|EEF35870.1| RNA binding protein, putative [Ricinus communis]
Length = 784
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 143/247 (57%), Gaps = 11/247 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E+DLR + +G+V EVRLM + ++ ++KGFAF+ F + E AKKA+ E
Sbjct: 214 EVFVGGLDKDATEDDLRKVFTRVGEVTEVRLMMNPQTKKNKGFAFLRFSTVEQAKKAVTE 273
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + + GK + S+ + LF+GN+ K WT++ ++ ++ G VE + L++D N
Sbjct: 274 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDVTLVEDSNNE 333
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + ++A + R + + F +D +S+AD P A QVK
Sbjct: 334 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD-RPAKVSFADSFIDPGDEIMA-QVKT 391
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVK 340
++V +P + ++++EL ++ GE+ K+ MP K ++DFGF+ + +A+ K
Sbjct: 392 VFVDGLPASWDEDRVRELLKKFGEIEKIELARNMPSAK--RKDFGFVTFDSHDAAVTCAK 449
Query: 341 DTEKYEI 347
E+
Sbjct: 450 SINNAEL 456
>gi|255569500|ref|XP_002525717.1| conserved hypothetical protein [Ricinus communis]
gi|223535017|gb|EEF36700.1| conserved hypothetical protein [Ricinus communis]
Length = 1034
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 150/260 (57%), Gaps = 9/260 (3%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+E+FIGGL DA EED+R + +G++ E+RL+ + ++G++K FAF+ + S AKKA++
Sbjct: 499 TEIFIGGLSTDAREEDIRKVFGAVGEIVELRLVTNSKTGKNKRFAFLRYSSAADAKKALE 558
Query: 167 ELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQN 225
+ E+ GK + E + +F+GN+ K WT + K+++++G ++ + ++ DP N
Sbjct: 559 KYAKVEICGKQCAVAPVEGNDTIFLGNIDKKWTNGDVIKLLQEIGIEKIDKVIVMTDPSN 618
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
RNRGF+FV + A + +K+ + N ++WA+P S PD +VK++
Sbjct: 619 VGRNRGFAFVELETHKDAQIAFKKLHKKDLGKLQNI-KVAWAEPLSEPDEEELL-KVKSV 676
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG--KSGKRDFGFIHYAERSSALKAVK--- 340
Y + +P + EK++ F + GE+ +V+ S ++DF FI+++ R +AL ++
Sbjct: 677 YAEYLPPSWDEEKLRSYFTKFGEIENIVLSRNLHSSRRKDFAFINFSTREAALACIESFY 736
Query: 341 -DTEKYEIDGQVLEVVLAKP 359
+T E ++V LAKP
Sbjct: 737 HETLTNEGSQVNVKVSLAKP 756
>gi|449519174|ref|XP_004166610.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101228505 [Cucumis sativus]
Length = 788
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 193/356 (54%), Gaps = 24/356 (6%)
Query: 8 EDRVDLEEDNYMEEMDDD-----VEEQVEEDPEEEGGD--GNFEENDDDEEYDHSKAGAS 60
++R+DLE+++ E D+D E+++E++ +E D G E+N DEE D +
Sbjct: 126 DERLDLEDNDPESEPDEDGGFEYDEKEIEQEDVQEVVDXGGEPEDNVGDEEGDMVEEDVE 185
Query: 61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSE--VFIGGLPKDA 118
+ + E DDD E+ E A + + ++D+H +++ E VF+GGL KD
Sbjct: 186 DAQEDLEGE--DDDQQGGEDHEH--AGMVDADEDEHHEVVKERRKRKEFEVFVGGLDKDV 241
Query: 119 SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178
EEDL+ + +G+V EVRLM + ++ ++KGFAF+ F + E AK+A+ EL + + GK
Sbjct: 242 KEEDLKKVFSAVGEVTEVRLMMNPQTKKNKGFAFLRFATVEEAKRAVSELKNPVINGKQC 301
Query: 179 RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVLY 237
+ S+ + LF+GN+ K W +D ++ ++ G VE + L++D N NRGF+F+ +
Sbjct: 302 GVTPSQDSDTLFLGNICKTWKKDALKEKLKHYGVDNVEDLTLVEDSNNEGSNRGFAFLEF 361
Query: 238 --YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTS 295
++A + R + + F +D +S+AD P A QVK ++V ++P +
Sbjct: 362 SSRSDAMDAFKRLQKRDVVFGVD-RPAKVSFADSFIDPGDEIMA-QVKTVFVDSLPASWD 419
Query: 296 TEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI 347
E ++ L +++GE+ K+ MP K ++DFGF+ + +A+ K E+
Sbjct: 420 EEFVRGLLKKYGEIEKIELARNMPSAK--RKDFGFVTFDTHDAAVSCAKSINNSEL 473
>gi|71987750|ref|NP_493049.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
gi|42733185|emb|CAB70238.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
Length = 611
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 140/254 (55%), Gaps = 9/254 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+++G +P D E+ L L E G ++++RLM D SG S+G+AFV++ +KE A A
Sbjct: 199 GHEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAA 258
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
E+ GK ++ ++S RLFIGN+PK ++DE + ++ GV + + P
Sbjct: 259 KTYDGHEISTGKPLKVNVSIANTRLFIGNIPKTKSKDEILEELKTHAEGVVDVIVYSVPD 318
Query: 225 NPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
N +NRGF FV + ++ A ++K+ + + WA+ + PD S+VK
Sbjct: 319 NEKIKNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQEEPDED-TMSKVK 377
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
LY++NI + + EK+ ELF+ + + +V +D+ FIH+ ER LKA+++
Sbjct: 378 VLYIRNIKEAVTEEKLNELFKEYASLDRV------KKVKDYAFIHFNERDDCLKAMEEWN 431
Query: 344 KYEIDGQVLEVVLA 357
E++G V+E LA
Sbjct: 432 GKELEGTVVEASLA 445
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 266 WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRD 323
W P + P A Q +YV +IP + + + LF++ G++ +++M P R
Sbjct: 188 WEGPATGP-----AGQGHEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRG 242
Query: 324 FGFIHYAERSSALKAVKDTEKYEID-GQVLEVVLAKPQT 361
+ F+ Y + A A K + +EI G+ L+V ++ T
Sbjct: 243 YAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVNVSIANT 281
>gi|343172766|gb|AEL99086.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 144/247 (58%), Gaps = 10/247 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+FIGGL + EEDL+ E +G+V EVRL+KD + +++G FV F +K+ AKKA+ E
Sbjct: 153 EIFIGGLDCEVVEEDLKMAFEKVGEVVEVRLLKDSCTNKNRGCGFVRFATKDQAKKALSE 212
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
+ + + GK + SE + LFIGN+ WT++ K +++ GVE I L++DP++
Sbjct: 213 MKNPVISGKRCGTAASEDNDTLFIGNICNTWTKEAINKKLKEYNLEGVENITLVQDPRHE 272
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+RGF F+ + +++A + R + + F T +++++P PD A +VK+
Sbjct: 273 GLSRGFCFIQFACHDDAMFAFKRLQKPDVIFGHAERTVKVAFSEPLQEPDPEIMA-KVKS 331
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIHYAERSSALKAVK 340
+++ +P +++++ FQ +GE+ +V MP K ++DFGF+ + +A+ ++
Sbjct: 332 VFIDGLPPYWDEDRVRKHFQGYGEIKRVTLARNMPAAK--RKDFGFVDFMTHEAAIACIE 389
Query: 341 DTEKYEI 347
D K ++
Sbjct: 390 DVNKKDL 396
>gi|358342035|dbj|GAA49590.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 1032
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 141/266 (53%), Gaps = 20/266 (7%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVFIG +P+D EE+L + E IG ++ RLM + +G ++G+ F + ++E K
Sbjct: 98 PPRGCEVFIGKIPRDCFEEELIPVFEQIGPIYMFRLMMEF-NGTNRGYGFCVYTNREDTK 156
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KA+ L + E+ KGKTI S RLF+G +PKN T +E ++ V GV+ +
Sbjct: 157 KAVQALDNYEIRKGKTIGVCFSVDNCRLFVGGIPKNKTREEIMAEMKRVTEGVKDVISYP 216
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ S+NRGF+FV Y ++ A +R+K++ +L + WA+P+ + S+
Sbjct: 217 SVTDKSKNRGFAFVEYESHKAAAMARRKLMPGKIQLWNQQIAVDWAEPEREVNED-IMSK 275
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHG--------EVTKVVMPPGKSGKRDFGFIHYAERS 333
VK LYV+N+ +T+ + ++E F V K+ D+ FIH+ ER
Sbjct: 276 VKILYVRNLMLSTTEDGLREHFVCAAGGDPNCIERVKKI---------SDYAFIHFKERE 326
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKP 359
A + ++ IDG +EV AKP
Sbjct: 327 QAARCLEALNDTLIDGSKIEVTWAKP 352
>gi|348518317|ref|XP_003446678.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Oreochromis niloticus]
Length = 594
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 143/265 (53%), Gaps = 43/265 (16%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G+E+F+G +P+D E++L L E G ++++RLM D S ++G+AF++F SKE A+
Sbjct: 158 PPVGTEIFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSSLNRGYAFITFCSKEGAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANGVTEELLEKSFSEFGKLERV------KKLKDYAFIHFEERDGAVKALEE 355
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
E++G+ +E+V AKP K+ E
Sbjct: 356 MNGKELEGEPIEIVFAKPPDQKRKE 380
>gi|358336055|dbj|GAA54619.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 292
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 140/249 (56%), Gaps = 10/249 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVFIG +P+D E++L + E +G ++ RLM D SG ++G+ F + ++E +
Sbjct: 38 PPRGCEVFIGKIPRDCFEDELVPIFETVGRIYMFRLMMDF-SGCNRGYGFCIYTNREDTR 96
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ EL S E++ GK + LS RLF+G +PKN T+DE + V GV+ + +
Sbjct: 97 RAVAELDSYEIRRGKMLGVCLSVDNCRLFVGGIPKNKTKDEIMAEMLKVTDGVKDVIVYP 156
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y N+ A +R+K++ L G+ + WA+P+ D S+
Sbjct: 157 SVADKTKNRGFAFVEYENHKAAAMARRKLIPGRIHLWGHQIAVDWAEPEREVDED-IMSK 215
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
V+ LYV+N+ +T+ E +++ R V K RD+ F+H+ +R A A++
Sbjct: 216 VRILYVRNLMLHTTEEALRDHCNRAIGAVDAVERVKKI--RDYAFVHFRDRLQATAALR- 272
Query: 342 TEKYEIDGQ 350
++DG+
Sbjct: 273 ----QLDGK 277
>gi|308505824|ref|XP_003115095.1| CRE-HRP-2 protein [Caenorhabditis remanei]
gi|308259277|gb|EFP03230.1| CRE-HRP-2 protein [Caenorhabditis remanei]
Length = 645
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 138/255 (54%), Gaps = 9/255 (3%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+G E+++G +P D E+ L L G +++ RLM D +G S+G+AFV++ KE A A
Sbjct: 223 SGHEIYVGHIPTDLFEDTLVPLFAESGKIWDFRLMMDPMTGASRGYAFVTYCEKEHATNA 282
Query: 165 IDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+ E+ GK ++ ++S RLF+GN+PK ++DE + ++ GV + + P
Sbjct: 283 AKKFDGHEISTGKPLKVNVSIANTRLFLGNIPKTKSKDEILEELKSHAEGVTDVIVYSVP 342
Query: 224 QNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
N RNRGF FV + ++ A ++K+ + + WA+ + PD S+V
Sbjct: 343 DNEKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEQQEEPDED-TMSKV 401
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
K LY++NI + + EK+ ELF+ + + +V +D+ FIH+ ER +KA++
Sbjct: 402 KVLYIRNIKEAVTEEKLTELFKEYASLDRV------KKVKDYAFIHFNERDDCMKAMEQW 455
Query: 343 EKYEIDGQVLEVVLA 357
E++G V+E LA
Sbjct: 456 NGKELEGTVVEASLA 470
>gi|343172764|gb|AEL99085.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 143/247 (57%), Gaps = 10/247 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+FIGGL + EEDL+ E +G+V EVRL+KD + +++G FV F +K+ AKKA+ E
Sbjct: 153 EIFIGGLDCEVVEEDLKMAFEKVGEVVEVRLLKDSCTNKNRGCGFVRFATKDQAKKALSE 212
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
+ + + GK + SE + LFIGN+ WT++ K +++ GVE I L++DP++
Sbjct: 213 MKNPVISGKRCGTAASEDNDTLFIGNICNTWTKEAITKKLKEYNLEGVENITLVQDPRHE 272
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+RGF F+ + +++A + R + + F T +++++P PD A +VK+
Sbjct: 273 GLSRGFCFIQFACHDDAMFAFKRLQKPDVIFGHAERTVKVAFSEPLQEPDPEIMA-KVKS 331
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIHYAERSSALKAVK 340
+++ +P +++++ FQ +GE+ +V MP K ++DFGF+ + +A+ +
Sbjct: 332 VFIDGLPPYWDEDRVRKHFQGYGEIERVTLARNMPAAK--RKDFGFVDFLTHEAAIACID 389
Query: 341 DTEKYEI 347
D K ++
Sbjct: 390 DINKKDL 396
>gi|22327128|ref|NP_198191.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332006412|gb|AED93795.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 180
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 112/195 (57%), Gaps = 56/195 (28%)
Query: 250 MLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309
M N +FKLD N PT+SWA+ +S + ++ASQVKALY+KN+P + + E++K LF+ HG++
Sbjct: 1 MSNPSFKLDDNAPTVSWAESRSGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKI 60
Query: 310 TKVVMPPGKSGKRD--FGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEG 367
KVV+PP K GK D +GF+HYAER+S ++A+K+TE+YEID
Sbjct: 61 LKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDASA---------------- 104
Query: 368 TFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMV 427
YS L+ HAG G AAG GM M+P++
Sbjct: 105 ---YSQPLM-----HAG----------------GHAAG--------------GMSMMPIM 126
Query: 428 LPDGQIGYVLQQPGV 442
LPDG+I YVLQQPG+
Sbjct: 127 LPDGRIRYVLQQPGL 141
>gi|149062707|gb|EDM13130.1| apobec-1 complementation factor, isoform CRA_d [Rattus norvegicus]
Length = 578
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 148/260 (56%), Gaps = 19/260 (7%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP RDL E IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLP--------RDLFEDIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAK 102
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 103 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 162
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 163 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 221
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 222 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 275
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 276 KALNGKVLDGSPIEVTLAKP 295
>gi|149062706|gb|EDM13129.1| apobec-1 complementation factor, isoform CRA_c [Rattus norvegicus]
Length = 586
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 148/260 (56%), Gaps = 19/260 (7%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP RDL E IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLP--------RDLFEDIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEAK 102
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 103 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 162
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 163 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 221
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 222 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 275
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 276 KALNGKVLDGSPIEVTLAKP 295
>gi|345326438|ref|XP_003431044.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 588
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 144/265 (54%), Gaps = 43/265 (16%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 356 MNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|345326440|ref|XP_001510154.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ornithorhynchus anatinus]
Length = 527
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 144/265 (54%), Gaps = 43/265 (16%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 356 MNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|324508419|gb|ADY43553.1| RNA-binding protein 47 [Ascaris suum]
Length = 558
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 139/261 (53%), Gaps = 10/261 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G+EVF+G LP+ S+ L + +G ++E+R M + SG ++G+ F ++S E AK
Sbjct: 58 PPRGTEVFVGKLPRAISDMRLIQVLSAVGPLYELRQMLEP-SGVNRGYCFAVYQSLEGAK 116
Query: 163 KAIDE---LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
+A E L++ E++ G+ I S RLFIG +P+ D+ I G E +
Sbjct: 117 RACIESLQLNNVEIEPGRRIGVVRSVDNRRLFIGGIPREIKADQIIAEIRKHTEGAEELV 176
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + SRNRGF+FV Y ++ A Y+R+K L L G T I WA+P+ D S
Sbjct: 177 VYPSILDKSRNRGFAFVEYRDHKSAAYARKKFLQEPLILWGKTVCIDWAEPEQQVD-SDI 235
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
VK LYV+N+ NT +++ F+ G++ + RDF F+H+ R AL A
Sbjct: 236 MENVKILYVRNLMLNTDEITLRKYFE-MGDIHCI---ERVKKIRDFAFVHFTTREKALNA 291
Query: 339 VKDTEKYEIDGQVLEVVLAKP 359
+ ++DG +EV LAKP
Sbjct: 292 LNKLNHTKLDGSTIEVCLAKP 312
>gi|449500421|ref|XP_004174936.1| PREDICTED: probable RNA-binding protein 46 [Taeniopygia guttata]
Length = 757
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 148/256 (57%), Gaps = 11/256 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + G ++E+RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFGRAGKIYELRLMME-FSGENRGYAFVMYTTKEEAQLAIK 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK+ ++E ++ V GV + + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKDKKKEEILNEMKKVTEGVVDVIVYPNATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R++++ F+ G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRRLIPGTFQPWGHTIQVDWADPEKIVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ +KIK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEDKIKAEFNKFKPGVVERV------KKLRDYAFVHFFHREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKP 359
IDG +EV LAKP
Sbjct: 293 GKCIDGASIEVTLAKP 308
>gi|341894933|gb|EGT50868.1| hypothetical protein CAEBREN_24646 [Caenorhabditis brenneri]
Length = 630
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 138/254 (54%), Gaps = 9/254 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+++G +P D E+ L L E G ++++RLM D +G S+G+AFV++ KE A A
Sbjct: 217 GHEIYVGHIPNDIFEDTLVPLFEKSGKIWDLRLMMDPMTGASRGYAFVTYCEKEHAANAA 276
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
E+ GK ++ ++S RLF+GN+PK ++DE + ++ GV + + P
Sbjct: 277 KTYDGHEISTGKPLKVNVSIANTRLFLGNIPKTKSKDEILEELKTHAEGVTDVIVYSVPD 336
Query: 225 NPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
N RNRGF FV + ++ A ++K+ + + WA+ + PD S+VK
Sbjct: 337 NDKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQEEPDED-TMSKVK 395
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
LY++NI + + EK+ E+F+ + + +V +D+ FIH+ ER +KA++
Sbjct: 396 VLYIRNIKEAVTEEKLTEIFKEYASLDRV------KKVKDYAFIHFNEREDCMKAMEQWN 449
Query: 344 KYEIDGQVLEVVLA 357
E++G V+E LA
Sbjct: 450 GKELEGTVVEASLA 463
>gi|228008295|ref|NP_001153147.1| heterogeneous nuclear ribonucleoprotein Q isoform 4 [Homo sapiens]
gi|297678606|ref|XP_002817155.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Pongo abelii]
gi|301775587|ref|XP_002923214.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Ailuropoda melanoleuca]
gi|332218421|ref|XP_003258354.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|332824482|ref|XP_518621.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Pan
troglodytes]
gi|348578332|ref|XP_003474937.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Cavia porcellus]
gi|426234738|ref|XP_004011349.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 6
[Ovis aries]
gi|296484069|tpg|DAA26184.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 1 [Bos taurus]
Length = 588
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 144/265 (54%), Gaps = 43/265 (16%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 356 MNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|395857936|ref|XP_003801336.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Otolemur garnettii]
Length = 588
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 144/265 (54%), Gaps = 43/265 (16%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 356 MNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|268569598|ref|XP_002640564.1| C. briggsae CBR-HRP-2 protein [Caenorhabditis briggsae]
Length = 626
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 142/257 (55%), Gaps = 9/257 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P E+++G +P D E+ L L G V+++RLM D +G S+G+AFV++ +KE A
Sbjct: 205 PTGSCEIYVGHIPNDIFEDKLLPLFAESGKVYDLRLMMDPMTGASRGYAFVTYCNKEDAA 264
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A + EL GKT++ ++S RLF+GN+PK ++DE + ++ GV + +
Sbjct: 265 AAAKKFDGHELSPGKTLKVNISIANTRLFLGNIPKTKSKDEILEELKTHAEGVTDVIVYS 324
Query: 222 DPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
P N RNRGF FV + ++ A ++K+ + + WA+ + PD + S
Sbjct: 325 VPDNEKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQDEPD-ADTMS 383
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+VK LY++NI + + EK+ ELF+ + + +V +D+ FIH+ ER +KA++
Sbjct: 384 KVKVLYIRNIKEAVTEEKLTELFKEYASLDRV------KKVKDYAFIHFNERDDCVKAME 437
Query: 341 DTEKYEIDGQVLEVVLA 357
+ +++G ++E LA
Sbjct: 438 EWNGKDLEGTIVEASLA 454
>gi|149062704|gb|EDM13127.1| apobec-1 complementation factor, isoform CRA_a [Rattus norvegicus]
Length = 375
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 148/260 (56%), Gaps = 19/260 (7%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP RDL E IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLP--------RDLFEDIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEAK 102
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 103 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 162
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 163 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 221
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 222 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 275
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 276 KALNGKVLDGSPIEVTLAKP 295
>gi|334324402|ref|XP_003340516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Monodelphis
domestica]
Length = 588
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 144/265 (54%), Gaps = 43/265 (16%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 356 MNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|344264675|ref|XP_003404417.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Loxodonta africana]
Length = 585
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 144/265 (54%), Gaps = 43/265 (16%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 155 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 214
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 215 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 274
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 275 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 298
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 299 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 352
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 353 MNGKDLEGENIEIVFAKPPDQKRKE 377
>gi|426353903|ref|XP_004044414.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 527
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 144/265 (54%), Gaps = 43/265 (16%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 356 MNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|395857932|ref|XP_003801334.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Otolemur garnettii]
Length = 527
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 144/265 (54%), Gaps = 43/265 (16%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 356 MNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|338710583|ref|XP_003362387.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 588
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 144/265 (54%), Gaps = 43/265 (16%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 356 MNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|338710585|ref|XP_003362388.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 527
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 144/265 (54%), Gaps = 43/265 (16%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 356 MNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|228008398|ref|NP_001153146.1| heterogeneous nuclear ribonucleoprotein Q isoform 3 [Homo sapiens]
gi|291396566|ref|XP_002714607.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Oryctolagus cuniculus]
gi|296198706|ref|XP_002746829.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Callithrix jacchus]
gi|301775583|ref|XP_002923212.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Ailuropoda melanoleuca]
gi|332218417|ref|XP_003258352.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|348578334|ref|XP_003474938.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Cavia porcellus]
gi|397504634|ref|XP_003822889.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Pan
paniscus]
gi|402867570|ref|XP_003897916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Papio anubis]
gi|426234736|ref|XP_004011348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 5
[Ovis aries]
gi|21619168|gb|AAH32643.1| SYNCRIP protein [Homo sapiens]
gi|119569013|gb|EAW48628.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_f [Homo sapiens]
gi|296484070|tpg|DAA26185.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 2 [Bos taurus]
gi|325464513|gb|ADZ16027.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
Length = 527
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 144/265 (54%), Gaps = 43/265 (16%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 356 MNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|344264677|ref|XP_003404418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Loxodonta africana]
Length = 524
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 144/265 (54%), Gaps = 43/265 (16%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 155 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 214
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 215 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 274
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 275 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 298
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 299 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 352
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 353 MNGKDLEGENIEIVFAKPPDQKRKE 377
>gi|149062705|gb|EDM13128.1| apobec-1 complementation factor, isoform CRA_b [Rattus norvegicus]
Length = 397
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 148/260 (56%), Gaps = 19/260 (7%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP RDL E IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLP--------RDLFEDIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEAK 102
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 103 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 162
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 163 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 221
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 222 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 275
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 276 KALNGKVLDGSPIEVTLAKP 295
>gi|37359248|gb|AAN77868.1| putative heterogeneous nuclear ribonucleoprotein [Vitis vinifera]
Length = 342
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 143/247 (57%), Gaps = 11/247 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E+DL+ + +G+V EVRLM + ++ ++KGFAF+ F + E AK+A+ E
Sbjct: 32 EVFVGGLDKDATEDDLKKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRAVTE 91
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + + GK + S+ + LF+GN+ K WT++ ++ ++ G VE + L++D N
Sbjct: 92 LKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNE 151
Query: 227 SRNRGFSFV--LYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + ++A + R + F +D T +S+ D P A QVK
Sbjct: 152 GMNRGFAFLEFSFRSDAMDAFKRLQEERCVFGVD-RTAKVSFTDSFIDPGDEIMA-QVKT 209
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+++ +P + ++++EL +++GE+ K+ MP K ++DFGF+ + +A+ K
Sbjct: 210 VFIDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAK--RKDFGFVTFDTHDAAVTCAK 267
Query: 341 DTEKYEI 347
E+
Sbjct: 268 SINNAEL 274
>gi|326916229|ref|XP_003204412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Meleagris gallopavo]
Length = 527
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 144/265 (54%), Gaps = 43/265 (16%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 356 MNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|359386142|gb|AEV43360.1| RNA recognition motif protein 1 [Citrus sinensis]
Length = 775
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 141/247 (57%), Gaps = 11/247 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KD +DLR + +G+V EVRLM + ++ ++KGFAF+ F + E A++A+ E
Sbjct: 198 EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQARQAVTE 257
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + + GK + S+ + LF+GN+ K WT++ ++ ++ G VE + L++D N
Sbjct: 258 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNE 317
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + ++A + R + + F +D +S+AD P A QVK
Sbjct: 318 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD-RPAKVSFADSFIDPGDEIMA-QVKT 375
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVK 340
++V +P + ++++EL + +GE+TK+ MP K ++DFGF+ + +A+ K
Sbjct: 376 VFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAK--RKDFGFVTFDTHDAAVTCAK 433
Query: 341 DTEKYEI 347
E+
Sbjct: 434 SINNAEL 440
>gi|15809588|gb|AAK59704.1| hnRNP Q2 [Homo sapiens]
Length = 588
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 143/265 (53%), Gaps = 43/265 (16%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NR F F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRSFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 356 MNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|119569012|gb|EAW48627.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_e [Homo sapiens]
Length = 588
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 143/265 (53%), Gaps = 43/265 (16%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH AA Q
Sbjct: 278 QPDDKKKNRGFCFLEY-----------------------------------EDHKTAA-Q 301
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
+ L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 302 ARLLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 356 MNGKDLEGENIEIVFAKPPDQKRKE 380
>gi|224067534|ref|XP_002302501.1| predicted protein [Populus trichocarpa]
gi|222844227|gb|EEE81774.1| predicted protein [Populus trichocarpa]
Length = 341
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 143/247 (57%), Gaps = 11/247 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E+DLR + +G+V EVRLM + ++ ++KGFAF+ F + E AK+A+ E
Sbjct: 33 EVFVGGLDKDATEDDLRKIFSRVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRAVTE 92
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + + GK + S+ + LF+GN+ K WT++ ++ ++ G V+ + L++D N
Sbjct: 93 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVKDLTLVEDSNNA 152
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + ++A + R + + F +D +S+AD P A QVK
Sbjct: 153 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVD-RPAKVSFADSFIDPGDEIMA-QVKT 210
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+++ +P + ++++ L +++GE+ K+ MP + ++DFGF+ + +A+ K
Sbjct: 211 VFIDGLPASWDEDRVRVLLKKYGEIEKIELARNMPSAR--RKDFGFVTFDTHDAAVTCAK 268
Query: 341 DTEKYEI 347
E+
Sbjct: 269 SINNAEL 275
>gi|402595099|gb|EJW89025.1| heterogeneous nuclear ribonucleoprotein Q [Wuchereria bancrofti]
Length = 688
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 166/318 (52%), Gaps = 19/318 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+G E++IG +PK+ E+ L L E +G ++++RLM D +G ++G+AF+++ K A +A
Sbjct: 290 SGHEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTAAYEA 349
Query: 165 IDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+ E+ GK ++ ++S RLFIGN+PK+ +++E ++ GV + P
Sbjct: 350 AKKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSP 409
Query: 224 Q--NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+NRGF F+ + ++ A +++K+ + + + WA+ + PD A +
Sbjct: 410 DAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETMA-K 468
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK LYV+N+ + + E++KE+F +GEV + RD+ FIH+ ER A+KA++
Sbjct: 469 VKVLYVRNLKEAVTEEQLKEMFSAYGEVDRA------KKIRDYAFIHFMEREPAIKAME- 521
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYG-GFAGTPYGSVGTGF 400
++ +++ + G F + G+ AG+G G G P +G+
Sbjct: 522 ----ALNEKMMRGRGRGFGGLRGAFGDFSFGRGIRGGRGT-AGFGRGTFGGPTDFSYSGY 576
Query: 401 GVAAGFQQPMIYGRGPMP 418
AG+++ +YG G P
Sbjct: 577 DPYAGYEE--LYGYGAPP 592
>gi|301611921|ref|XP_002935471.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 579
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 137/255 (53%), Gaps = 11/255 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+FIG LP+D E++L LCE G V+E+R+M D +G ++G+AFV+F +++ A+ AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKTGKVYEMRMMMD-FNGNNRGYAFVTFTNRQDARDAI 113
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E + V GV + +
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILVEMRKVTDGVLDVIVYPSAA 173
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ S+NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S VK
Sbjct: 174 DKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VKI 232
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344
LYV+N+ T+ E I++ F + PGK + + K +
Sbjct: 233 LYVRNLMLTTAEETIEKEFSN--------VKPGKKHLCLYCTSIILNLHTIKKMITILCL 284
Query: 345 YEIDGQVLEVVLAKP 359
IDG +EV LAKP
Sbjct: 285 QIIDGSPIEVTLAKP 299
>gi|301611919|ref|XP_002935470.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 587
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 137/255 (53%), Gaps = 11/255 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G E+FIG LP+D E++L LCE G V+E+R+M D +G ++G+AFV+F +++ A+ AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKTGKVYEMRMMMDF-NGNNRGYAFVTFTNRQDARDAI 113
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L++ E++ G+ + S RLF+G +PK +E + V GV + +
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILVEMRKVTDGVLDVIVYPSAA 173
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ S+NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S VK
Sbjct: 174 DKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VKI 232
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344
LYV+N+ T+ E I++ F + PGK + + K +
Sbjct: 233 LYVRNLMLTTAEETIEKEFSN--------VKPGKKHLCLYCTSIILNLHTIKKMITILCL 284
Query: 345 YEIDGQVLEVVLAKP 359
IDG +EV LAKP
Sbjct: 285 QIIDGSPIEVTLAKP 299
>gi|358344177|ref|XP_003636168.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355502103|gb|AES83306.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 824
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 139/239 (58%), Gaps = 11/239 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E+DLR + +G V EVRLM + ++ ++KGFAF+ F + E AK+A+ E
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + + GK + S+ + L++GN+ K WT++ ++ ++ G VE I L++D +
Sbjct: 276 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDK 335
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + ++A + R + + F +D +S+AD P SQVK
Sbjct: 336 GTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVD-KPAKVSFADSFIDPGDE-IMSQVKT 393
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIHYAERSSALKAV 339
+++ +P + + ++ L +++GEV K+ MP + ++D+GF+ + +A++
Sbjct: 394 VFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAAR--RKDYGFVTFGSHDAAIRCA 450
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI LP E+ +R+L + G+V ++ L ++ + K + FV+F S + A + D +
Sbjct: 394 VFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCADSI 453
Query: 169 HSKEL----KGKTIRCSLSETKNR 188
EL K +R LS R
Sbjct: 454 TGTELGEGDKKAKVRARLSRPLQR 477
>gi|322780793|gb|EFZ10022.1| hypothetical protein SINV_02126 [Solenopsis invicta]
Length = 381
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 138/259 (53%), Gaps = 11/259 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+E+F+G LP+D E++L L E +G + E+RLM D SG ++G+AF + A++A
Sbjct: 43 GAEIFLGRLPRDCYEDELMPLLEQVGRLLELRLMLDF-SGSTRGYAFALYEDPRIAREAC 101
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ L+ E++ G I S RLF G VPKN T+ EF + + + G+ I + + Q
Sbjct: 102 ERLNGHEIRPGHRIGVVKSMDNCRLFFGGVPKNKTKLEFLEELTKILDGIVDIYVYPNAQ 161
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPDHSAAASQVK 283
N S NRGF FV + ++ A +R+K++ L + + WADP+ P V
Sbjct: 162 NRSLNRGFIFVEFRDHRAAAMARRKLIPGKVMLWDHEIAVDWADPEPGDPVDEDIMETVT 221
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSALKAVKDT 342
AL+V+N+ + +K+KE+ RH V P K K + F FIHY R +A +
Sbjct: 222 ALFVRNLSIDMPQQKVKEIIYRHTNV-----PILKLKKINHFAFIHYESREAAQTVMDIM 276
Query: 343 EKYE--IDGQVLEVVLAKP 359
+K + ++ Q EV AKP
Sbjct: 277 QKPDSIVEQQGWEVRWAKP 295
>gi|47225126|emb|CAF98753.1| unnamed protein product [Tetraodon nigroviridis]
Length = 583
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 148/300 (49%), Gaps = 49/300 (16%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L L E G ++E RLM + +GE++G+AFV + +KE A++AI
Sbjct: 75 GCEVFVGKIPRDMYEDELVPLFERAGKLYEFRLMMEF-TGENRGYAFVMYTNKEAAQRAI 133
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
L + +++ GK I +S RLF+G++PK T+DE ++ + GV + +
Sbjct: 134 QMLDNYKVRPGKFIGVCVSLDNCRLFLGSIPKEKTKDEVLAEMKKLTDGVVDVIMYPSST 193
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKML--------------------------------- 251
+ S+NRGF+FV Y ++ A +R+K++
Sbjct: 194 DKSKNRGFAFVEYKSHKAAAMARRKLIPGTSLSSDSVRGSIVFCPSALGFFFFTSMCVSS 253
Query: 252 -----NANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
F+L G + + WA P+ + +V+ LYV+N+ NTS E + + F
Sbjct: 254 GRGCTTGTFQLWGQSIQVDWAQPEKDVEEE-VMQRVRVLYVRNLMLNTSEETLFKAFSHF 312
Query: 307 --GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
G V +V D+ F+HY R AL A+ IDG +EV+LAKP K+
Sbjct: 313 KPGSVERV------KKFTDYAFVHYYCREDALAALDPMNGVLIDGAAVEVMLAKPAISKE 366
>gi|67972374|dbj|BAE02529.1| unnamed protein product [Macaca fascicularis]
Length = 414
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 120 EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTI 178
E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI L++ E++ GK I
Sbjct: 3 EDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFI 61
Query: 179 RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYY 238
+S RLFIG +PK ++E ++ V GV + + + ++NRGF+FV Y
Sbjct: 62 GVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYE 121
Query: 239 NNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEK 298
++ A +R+K++ F+L G+T + WADP+ D +VK LYV+N+ +T+ E
Sbjct: 122 SHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVLYVRNLMISTTEET 180
Query: 299 IKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356
IK F + G V +V RD+ F+H+ R A+ A+ IDG +EV L
Sbjct: 181 IKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTL 234
Query: 357 AKPQTDKKT 365
AKP + T
Sbjct: 235 AKPVNKENT 243
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 35/190 (18%)
Query: 100 LALPPNGSEVFIGGLPKDASEEDLRD----LCEPIGDVFEVRLMKDKESGESKGFAFVSF 155
+ + + +FIG +PK+ +E++ D + E + DV DK +++GFAFV +
Sbjct: 63 VCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK--TKNRGFAFVEY 120
Query: 156 RSKEFAKKAIDELH--SKELKGKTIRCSLS--------ETKNR---LFIGNVPKNWTEDE 202
S A A +L + +L G TI+ + ET R L++ N+ + TE+
Sbjct: 121 ESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEET 180
Query: 203 FRKVIEDVGPG-VETIELIKDPQNPSRNRGFSFVLYYN--NACADYSRQKMLNANFKLDG 259
+ PG VE ++ ++D ++FV ++N +A A S ++N +DG
Sbjct: 181 IKAEFNKFKPGAVERVKKLRD---------YAFVHFFNREDAVAAMS---VMNGKC-IDG 227
Query: 260 NTPTISWADP 269
+ ++ A P
Sbjct: 228 ASIEVTLAKP 237
>gi|363733071|ref|XP_420372.3| PREDICTED: probable RNA-binding protein 46 [Gallus gallus]
Length = 475
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 149/260 (57%), Gaps = 7/260 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P++ E++L L E G ++E+RLM + SGE++GFAFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRNIYEDELVPLFERAGKIYELRLMMEF-SGENRGFAFVMYTTKEDAQLAIK 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ G+ I +S RLFIG +P+ ++E K ++ + GV + + D +
Sbjct: 120 ILNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRITEGVVDVIVCPDATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+++L F+L G + WA P+ D + +VK L
Sbjct: 180 RTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKEVD-AETMRRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345
YV+N+ +T+ + IK F + +VV K RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEDTIKAEFNKFKP--RVVERVKK--LRDYAFVHFYNREDAVAAMSIMNGK 294
Query: 346 EIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 295 CIDGASIEVTLAKPVNKEST 314
>gi|350645567|emb|CCD59692.1| apobec-1 complementation factor, putative [Schistosoma mansoni]
Length = 702
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 134/239 (56%), Gaps = 5/239 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVFIG +P+D E++L + E G ++ RLM D +G ++G+ F + ++ K
Sbjct: 61 PPKGCEVFIGKIPRDCFEDELIPIFELAGKIYMFRLMMD-FNGLNRGYGFCLYTNRNDTK 119
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+D+L+ E+ KGK + S RLFIG +PK+ T+DE + V GV+ + +
Sbjct: 120 QAVDQLNGYEIRKGKLLGVCYSIDNCRLFIGGIPKSKTKDEIMLEMSKVTDGVKDVIVYP 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y N+ A +R+K++ L G+ + WA+P+ D + S+
Sbjct: 180 SLVDKTKNRGFAFVEYENHKTAAMARRKLIPGRIHLWGHQIAVDWAEPERQVDEN-IMSK 238
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
V+ LYV+N+ +T+ +K+ F + V K RD+ F+H+ R A+ A+K
Sbjct: 239 VRILYVRNLMLHTTENAVKDHFNQAIHSMDAVERVKKI--RDYAFVHFHNRIDAITALK 295
>gi|339253564|ref|XP_003372005.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316967645|gb|EFV52050.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 2180
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 149/268 (55%), Gaps = 23/268 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
E++IG +PK E+ L L E G ++++R+M D SG +KG+AFV++ K A +A
Sbjct: 214 CEIYIGKIPKGIFEDTLIPLFEQCGKIYDIRVMMDPLSGTNKGYAFVTYCDKSSATEAAK 273
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPGVETIE--- 218
+ E+K GK +R ++S RLF+GN+PK+ +EF KV GV+ I
Sbjct: 274 KFEGYEIKNGKRLRVNVSVANTRLFVGNIPKSKGKEDIMEEFSKV-----SGVQNITDVI 328
Query: 219 LIKDPQNP--SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276
+ +P +P +NRGF F+ + ++ A +++++ ++ F+ + WA+ + D
Sbjct: 329 MYSNPNDPVNKKNRGFCFLEFADHKSASQAKRRLGSSRFRPWMMELVVEWAETQDDVDKE 388
Query: 277 AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
S+VK LY++ + D+ S E+++ F ++G V +V +D+ F+H+AER A
Sbjct: 389 -TMSKVKILYLRPLKDSVSEEELRVRFSQYGTVERV------KRIKDYAFVHFAEREQAE 441
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
KA++ + E DG EV AKP TD+K
Sbjct: 442 KAIEAMKGQEFDGVPCEVSFAKP-TDRK 468
>gi|224136394|ref|XP_002326849.1| predicted protein [Populus trichocarpa]
gi|222835164|gb|EEE73599.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 140/247 (56%), Gaps = 11/247 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+F+GGL KDA+E+DLR + +G+V E RLM + ++ ++KGFAF+ F + E AK+A+ E
Sbjct: 33 EIFVGGLDKDATEDDLRKVFSRVGEVTEARLMMNPQTKKNKGFAFLRFATVEQAKRAVTE 92
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + + GK + S+ + LF+GN+ K WT++ ++ ++ G VE + L++D N
Sbjct: 93 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNL 152
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + ++A + R + + F +D +S+AD P A QVK
Sbjct: 153 GMNRGFAFLEFSSRSDAMNAFKRLQKRDVLFGVD-RPAKVSFADSFIGPGDEIMA-QVKT 210
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVK 340
L++ +P + ++ + L +++G + K+ MP + ++DFGF+ + +A+ K
Sbjct: 211 LFIDGLPASWDEDRFRVLLKKYGNIEKIELARNMPSAR--RKDFGFVTFDTHDAAVACAK 268
Query: 341 DTEKYEI 347
E+
Sbjct: 269 SINNVEL 275
>gi|326918248|ref|XP_003205402.1| PREDICTED: probable RNA-binding protein 46-like, partial [Meleagris
gallopavo]
Length = 467
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 149/260 (57%), Gaps = 7/260 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P++ E++L L E G ++E+RLM + SGE++GFAFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRNIYEDELVPLFERAGKIYELRLMMEF-SGENRGFAFVMYTTKEDAQLAIK 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ G+ I +S RLFIG +P+ ++E K ++ + GV + + D +
Sbjct: 120 ILNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRITEGVVDVIVCPDATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+++L F+L G + WA P+ D + +VK L
Sbjct: 180 RTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKEVD-AETMRRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345
YV+N+ +T+ + IK F + +VV K RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEDTIKAEFNKFKP--RVVERVKK--LRDYAFVHFYNREDAVAAMSVMNGK 294
Query: 346 EIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 295 CIDGASIEVTLAKPVNKEST 314
>gi|356522972|ref|XP_003530116.1| PREDICTED: uncharacterized protein LOC100777658 [Glycine max]
Length = 866
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 139/239 (58%), Gaps = 11/239 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E DLR + +G V EVRLM + ++ ++KGFAF+ F + E AK+A+ E
Sbjct: 283 EVFVGGLDKDATESDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAE 342
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + + GK + S+ + L++GN+ K WT++ ++ ++ G VE + L++D +
Sbjct: 343 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDE 402
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+NRGF+F+ + + A + R + + F +D +S+AD P A QVK
Sbjct: 403 GKNRGFAFLEFPSRSEAMDAFKRLQRRDVVFGVD-KLAKVSFADSFIDPGDEIMA-QVKT 460
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIHYAERSSALKAV 339
+++ +P + + +++L +++GE+ K+ MP + ++D+GF+ + +A+K
Sbjct: 461 VFIDALPPSWDEDYVRDLLRKYGEIEKIELARNMPAAR--RKDYGFVTFGTHDAAVKCA 517
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI LP E+ +RDL G++ ++ L ++ + K + FV+F + + A K D +
Sbjct: 461 VFIDALPPSWDEDYVRDLLRKYGEIEKIELARNMPAARRKDYGFVTFGTHDAAVKCADSI 520
Query: 169 HSKEL----KGKTIRCSLSETKNR 188
EL K +R LS R
Sbjct: 521 TGTELGEGHKKAKVRARLSRPLQR 544
>gi|256077575|ref|XP_002575078.1| apobec-1 complementation factor [Schistosoma mansoni]
Length = 847
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 133/239 (55%), Gaps = 5/239 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVFIG +P+D E++L + E G ++ RLM D +G ++G+ F + ++ K
Sbjct: 61 PPKGCEVFIGKIPRDCFEDELIPIFELAGKIYMFRLMMD-FNGLNRGYGFCLYTNRNDTK 119
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+D+L+ E+ KGK + S RLFIG +PK+ T+DE + V GV+ + +
Sbjct: 120 QAVDQLNGYEIRKGKLLGVCYSIDNCRLFIGGIPKSKTKDEIMLEMSKVTDGVKDVIVYP 179
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y N+ A +R+K++ L G+ + WA+P+ D S+
Sbjct: 180 SLVDKTKNRGFAFVEYENHKTAAMARRKLIPGRIHLWGHQIAVDWAEPERQVD-ENIMSK 238
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
V+ LYV+N+ +T+ +K+ F + V K RD+ F+H+ R A+ A+K
Sbjct: 239 VRILYVRNLMLHTTENAVKDHFNQAIHSMDAVERVKKI--RDYAFVHFHNRIDAITALK 295
>gi|225462858|ref|XP_002270102.1| PREDICTED: uncharacterized protein LOC100266805 [Vitis vinifera]
Length = 719
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 154/296 (52%), Gaps = 15/296 (5%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL +D +E+DL +GD+ EVRLMK+ + ++KGFAF+ F + E A++A++E
Sbjct: 126 EVFVGGLDRDVTEDDLFHFFRQVGDITEVRLMKNALTQKNKGFAFIRFATVEQARRAVNE 185
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + GK + S+ + LF+GN+ K WT+ + + G E + L++D +N
Sbjct: 186 LKHPVINGKQCGVAPSQDSDTLFVGNICKTWTKVAVKDKLAYYGVDKYEDLTLVEDTKNE 245
Query: 227 SRNRGFSFVLYYNNACA--DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + + A A R + + F D T +++AD PD SQV+
Sbjct: 246 GMNRGFAFLDFSSRADALEACKRLQKRDVVFGTD-RTARVAFADTFIEPD-DEIMSQVRT 303
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+++ +P +++++ ++ G + K+ MP K + DFGF+ + SA+ V
Sbjct: 304 IFLDGLPATWDEDRVRDYLKKFGRIEKIELARNMPAAK--RTDFGFVTFDTHDSAVACVD 361
Query: 341 DTEKYE-IDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGS 395
E +DG+ L V A+ ++ + ++ G +L G G P+GS
Sbjct: 362 SINNSELVDGERLVKVRARLSRPRQRGKSAKHARG---GYLVAQGSGRGFKAPWGS 414
>gi|356503232|ref|XP_003520415.1| PREDICTED: uncharacterized protein LOC100779340 [Glycine max]
Length = 816
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 138/239 (57%), Gaps = 11/239 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E DLR +G V EVRLM + ++ ++KGFAF+ F + E AK+A+ E
Sbjct: 233 EVFVGGLDKDATESDLRKAFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAE 292
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + + GK + S+ + L++GN+ K WT++ ++ ++ G VE + L++D +
Sbjct: 293 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDE 352
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+NRGF+F+ + + A + R + + F +D +S+AD P A QVK
Sbjct: 353 GKNRGFAFLEFPSRSEAMDAFKRLQRRDVVFGVD-KPAKVSFADSFIDPGDEIMA-QVKT 410
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIHYAERSSALKAV 339
+++ +P + + +++L +++GE+ K+ MP + ++D+GF+ + +A+K
Sbjct: 411 VFIDALPPSWDEDYVRDLLRKYGEIEKIELARNMPAAR--RKDYGFVTFGSHDAAVKCA 467
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI LP E+ +RDL G++ ++ L ++ + K + FV+F S + A K D +
Sbjct: 411 VFIDALPPSWDEDYVRDLLRKYGEIEKIELARNMPAARRKDYGFVTFGSHDAAVKCADSI 470
Query: 169 HSKEL----KGKTIRCSLSETKNR 188
EL K +R LS R
Sbjct: 471 TGTELGEGDKKAKVRARLSRPLQR 494
>gi|321475098|gb|EFX86062.1| hypothetical protein DAPPUDRAFT_45498 [Daphnia pulex]
Length = 269
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 133/253 (52%), Gaps = 11/253 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF+G +P+D E +L + + +G V+E+RLM D ++GFAFV+F + A
Sbjct: 23 PSKGGEVFVGKIPRDLMENELLPVFQTVGPVYEIRLMMDTNE-TNRGFAFVTFATPADAG 81
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KAI +L+ E++ G+ I S RLFIG +PK+ +E+E K + + GV + L
Sbjct: 82 KAIQKLNRYEIRPGRFIGVIRSMDNCRLFIGGIPKDKSEEEIHKEMSRITEGVVRVILYS 141
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +NRGF+F+ Y ++ A +R+K L L G + WA+ S+
Sbjct: 142 SVADKKKNRGFAFIEYESHRAAALARRKCLPDRLLLWGKNVAVDWAE-PEPVVEEEILSK 200
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGE--VTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
V+ LYV+N+ T ++++ELF G V KV + DF FIH+ RS A +A+
Sbjct: 201 VRVLYVRNLLITTKEKELEELFDTAGNGGVEKVKI------LNDFAFIHFGSRSQAQQAM 254
Query: 340 KDTEKYEIDGQVL 352
+ + ++
Sbjct: 255 DALQGIRVSCMLI 267
>gi|296087486|emb|CBI34075.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 154/296 (52%), Gaps = 15/296 (5%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL +D +E+DL +GD+ EVRLMK+ + ++KGFAF+ F + E A++A++E
Sbjct: 187 EVFVGGLDRDVTEDDLFHFFRQVGDITEVRLMKNALTQKNKGFAFIRFATVEQARRAVNE 246
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + GK + S+ + LF+GN+ K WT+ + + G E + L++D +N
Sbjct: 247 LKHPVINGKQCGVAPSQDSDTLFVGNICKTWTKVAVKDKLAYYGVDKYEDLTLVEDTKNE 306
Query: 227 SRNRGFSFVLYYNNACA--DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + + A A R + + F D T +++AD PD SQV+
Sbjct: 307 GMNRGFAFLDFSSRADALEACKRLQKRDVVFGTD-RTARVAFADTFIEPD-DEIMSQVRT 364
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+++ +P +++++ ++ G + K+ MP K + DFGF+ + SA+ V
Sbjct: 365 IFLDGLPATWDEDRVRDYLKKFGRIEKIELARNMPAAK--RTDFGFVTFDTHDSAVACVD 422
Query: 341 DTEKYE-IDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGS 395
E +DG+ L V A+ ++ + ++ G +L G G P+GS
Sbjct: 423 SINNSELVDGERLVKVRARLSRPRQRGKSAKHARG---GYLVAQGSGRGFKAPWGS 475
>gi|297824497|ref|XP_002880131.1| hypothetical protein ARALYDRAFT_483601 [Arabidopsis lyrata subsp.
lyrata]
gi|297325970|gb|EFH56390.1| hypothetical protein ARALYDRAFT_483601 [Arabidopsis lyrata subsp.
lyrata]
Length = 805
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 148/262 (56%), Gaps = 13/262 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+F+G L K A+EEDL+ + +G+V E+R++K+ ++ +SKG AF+ F + E AK+A+ E
Sbjct: 211 EIFVGSLDKGATEEDLKKVFGHVGEVTEIRILKNPQTKKSKGSAFLRFATMEQAKRAVKE 270
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L S + GK + S+ + LFIGN+ K WT + R+ ++ G ++ I L++D N
Sbjct: 271 LKSPMINGKKCGVTASQDNDTLFIGNICKTWTPEALREKLKHYGVENMDDITLVEDSNNV 330
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKAL 285
+ NRG++F+ + + + A + ++++ + P +S+ D P+ A QVK +
Sbjct: 331 NMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVSFTDSFLDPEDEIMA-QVKTI 389
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVKD 341
++ + + + E++++L +R+G++ KV MP + ++DFGF+ + +A+ K
Sbjct: 390 FIDGLLPSWNEERVRDLLKRYGKLEKVELARNMPSAR--RKDFGFVTFDTHEAAVTCAKF 447
Query: 342 TEKYEI----DGQVLEVVLAKP 359
E+ D + L++P
Sbjct: 448 INNSELGEGEDKAKVRARLSRP 469
>gi|355561882|gb|EHH18514.1| hypothetical protein EGK_15134, partial [Macaca mulatta]
Length = 434
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 109/173 (63%), Gaps = 1/173 (0%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPD 330
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 23/181 (12%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
+F+G +P++ EDE + E GP + + L+ DP NRG++FV + A + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLT-GLNRGYAFVTFCTKEAAQEAVK 221
Query: 249 KMLNANFKLDGNT-PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
N + + IS A+ + L+V +IP + + E+I E F +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR--------------LFVGSIPKSKTKEQILEEFSKVT 267
Query: 308 E-VTKVVM---PPGKSGKRDFGFIHYAERSSALKAVKD--TEKYEIDGQVLEVVLAKPQT 361
E +T V++ P K R F F+ Y + +A +A + + K ++ G V V A P
Sbjct: 268 EGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIE 327
Query: 362 D 362
D
Sbjct: 328 D 328
>gi|313216719|emb|CBY37974.1| unnamed protein product [Oikopleura dioica]
Length = 580
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 143/274 (52%), Gaps = 28/274 (10%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCE--PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
N E FIG L +DA E D+ L E P V+E+RLM + G+S+GFAFVSF A+
Sbjct: 208 NNGECFIGSLHRDAFEPDIWTLLEEVPEATVYEIRLMMGYD-GKSRGFAFVSFVEDGAAQ 266
Query: 163 KAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
+ L +K+ K + ++S R+FIG++PK+ ++ +F + + + G +
Sbjct: 267 RCKALLDTKQFMEKKLHVNVSIPATRIFIGSIPKDKSKQQFEEELTNNGVSTWVVNQ-SQ 325
Query: 223 PQNPSRNRGFSFVLY-------------YNNACADYS--RQKMLNANFKLDGN-TPTISW 266
N + NRGF+FV + +N Y ++ +LN + L G + W
Sbjct: 326 KDNGASNRGFAFVEFESHMDASTVKVQSFNKLHLFYECFKKNLLNRSLALFGRYYQNVDW 385
Query: 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGF 326
ADP++TPD + S VK LYVK + + E+IK LF+ +G V KV +F F
Sbjct: 386 ADPENTPDDN-VMSTVKNLYVKGWSEARTEEEIKALFEPYGVVEKV------KKINNFSF 438
Query: 327 IHYAERSSALKAVKDTEKYEI-DGQVLEVVLAKP 359
+H+ ER SALKA++ + +V++V LAKP
Sbjct: 439 VHFVERDSALKAIEAMNGKNFGNDEVIDVSLAKP 472
>gi|115459706|ref|NP_001053453.1| Os04g0543200 [Oryza sativa Japonica Group]
gi|38345947|emb|CAE04271.2| OSJNBb0103I08.18 [Oryza sativa Japonica Group]
gi|38345949|emb|CAE04337.2| OSJNBb0038F03.1 [Oryza sativa Japonica Group]
gi|113565024|dbj|BAF15367.1| Os04g0543200 [Oryza sativa Japonica Group]
gi|215678877|dbj|BAG95314.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215717042|dbj|BAG95405.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 774
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 137/247 (55%), Gaps = 11/247 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E DLR + +G++ EVRLM + + ++KGFAF+ + + E A++A+ E
Sbjct: 191 EVFVGGLDKDATESDLRKVFGEVGEITEVRLMMNPVTKKNKGFAFLRYATVEQARRAVSE 250
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + ++GK + S + LF+GN+ K WT++ ++ ++ G + + L++D NP
Sbjct: 251 LKNPSVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKEKLKSYGVENFDDLLLVEDSNNP 310
Query: 227 SRNRGFSFVLYYNN--ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRG++ + + A + R + + F +D + +S+AD D A QV+
Sbjct: 311 GMNRGYALLEFSTRPEAMDAFRRLQKRDVVFGVD-RSAKVSFADSYPEVDDEIMA-QVRT 368
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIHYAERSSALKAVK 340
+++ +P + +++K+ +++G + KV MP K ++DFGF+ + +A+
Sbjct: 369 VFIDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAK--RKDFGFVTFDTHDNAVACAD 426
Query: 341 DTEKYEI 347
EI
Sbjct: 427 GITNSEI 433
>gi|426221982|ref|XP_004005184.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Ovis aries]
Length = 598
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 142/265 (53%), Gaps = 43/265 (16%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y DH +AA Q
Sbjct: 281 QPDDKKKNRGFCFLEY-----------------------------------EDHKSAA-Q 304
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 305 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 358
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 359 MNGKEIEGEEIEIVLAKPPDKKRKE 383
>gi|307103016|gb|EFN51281.1| hypothetical protein CHLNCDRAFT_141215 [Chlorella variabilis]
Length = 365
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 136/276 (49%), Gaps = 55/276 (19%)
Query: 100 LALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES-GESKGFAFVSFRSK 158
L+LPP+G+EVFIGGLP+ +E+ LRD GDV +L+KD + +++G+ F+ F +K
Sbjct: 13 LSLPPHGTEVFIGGLPRTITEQQLRDFASEAGDVHSAKLIKDPNNPSQNRGYGFIKFYTK 72
Query: 159 EFAKKAIDELHSKELK---GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
E A A+D LHSKEL +R S+ K++LFIG +P + +E
Sbjct: 73 EAAISAMDRLHSKELPDFPSTRVRIQPSQAKHKLFIGGIPHELSREE------------- 119
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS---- 271
+KD +P + A + PT+ +A+P
Sbjct: 120 ----LKDMLDPI-----------------VKGEAGGLAGGGIGEKQPTVDYAEPSQRDGG 158
Query: 272 -----------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
VK ++V N+P + ++++++F ++GEV + +P + G
Sbjct: 159 GGGGGGGGGGGGGGGGGGGGGVKNVFVGNLPPGATEDRLRDIFNKYGEVERTHIPRPRDG 218
Query: 321 --KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354
+GF+H+ ER++A++AV+D EK E+DG +L V
Sbjct: 219 DTHSKYGFVHFRERAAAMRAVEDVEKPELDGGLLNV 254
>gi|326497027|dbj|BAK02098.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 776
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 138/252 (54%), Gaps = 21/252 (8%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E DLR + +G++ EVRLM + + ++KGFAF+ F + E AK+A+ +
Sbjct: 195 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 254
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFR---KVIEDVGPGVETIE---LIK 221
L + ++GK + S + LF+GN+ K WT++ + K+ E VE + L++
Sbjct: 255 LKNPMVRGKQCGVAPSRDNDTLFVGNICKTWTKEHLKDKLKIYE-----VENFDDLILVE 309
Query: 222 DPQNPSRNRGFSFVLYYNN--ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
D NP NRG++ + + A + R + + F +D T +S+AD D A
Sbjct: 310 DSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDVVFGVD-RTAKVSFADSYPEVDDEMMA 368
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSA 335
QV+ +++ +P + +++K+ +++G + KV MP K ++DFGF+ + +A
Sbjct: 369 -QVRTVFLDGLPPSWEEDRVKKYLKKYGAIEKVELARNMPAAK--RKDFGFVTFDTHDNA 425
Query: 336 LKAVKDTEKYEI 347
+ V EI
Sbjct: 426 VACVDGITSSEI 437
>gi|189234902|ref|XP_967881.2| PREDICTED: similar to APOBEC-1 complementation factor long
[Tribolium castaneum]
Length = 311
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 136/259 (52%), Gaps = 8/259 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G+E+FIG LP D E++L L G ++ +RLM D G ++G+ F+S+ ++E A
Sbjct: 41 PPKGTEIFIGNLPPDLYEDELIPLFSQKGPIYNLRLMMD-FFGRTRGYGFISYFTQEDAH 99
Query: 163 KAIDELHSKELKGK-TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ ++ +++ K I S+S RLFIGN+P++ T E + V+E G+ I
Sbjct: 100 AAVAAFNNYKIRNKGKIAVSMSVDNRRLFIGNIPRHVTLSEIQSVLEKYVEGIVDIIFYH 159
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+P N S NRGF FV + ++ A +R+++ N + G + WA+P + Q
Sbjct: 160 EPYNDSINRGFIFVEFESHRLAAIARRQLSPGNLTIWGKPIFVDWAEPLPVVN-PQILKQ 218
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
V LY+ N+P S+E++K + + ++ K K +F F+H+ R A +A +
Sbjct: 219 VTKLYLSNLPMTLSSEELKSFLCELLDPSHII----KVHKINNFAFVHFTLRKYAEEAFR 274
Query: 341 DTEKYEIDGQVLEVVLAKP 359
+ +++ V A+P
Sbjct: 275 KLTGLVMMDKLIGVEWARP 293
>gi|340711039|ref|XP_003394089.1| PREDICTED: APOBEC1 complementation factor-like [Bombus terrestris]
Length = 471
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 127/233 (54%), Gaps = 9/233 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+E+F+G LP+D E++L + E +G + E+RLM D SG ++G+AF F + + A+ A
Sbjct: 56 GAEIFLGRLPRDCYEDELMPMLETVGRLIELRLMLDF-SGSTRGYAFALFENSKIARSAC 114
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L E++ G I S RLF G VPKN ++EF + + + G+ I L
Sbjct: 115 AKLDGYEIRHGHRIGVVKSVDNCRLFFGGVPKNKCKEEFMQELNKILEGIIDIYLYPSAH 174
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPDHSAAASQVK 283
+ + NRGF FV + ++ A +R+K++ L + + WADP+ P V
Sbjct: 175 DKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEVMENVT 234
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSA 335
AL+V+N+ N +KI+++FQ++ ++ P K K + F F+HY R +A
Sbjct: 235 ALFVRNLSLNMPQQKIRDIFQKNTKI-----PILKLKKINHFAFVHYENRKAA 282
>gi|350400746|ref|XP_003485944.1| PREDICTED: APOBEC1 complementation factor-like [Bombus impatiens]
Length = 463
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 127/233 (54%), Gaps = 9/233 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+E+F+G LP+D E++L + E +G + E+RLM D SG ++G+AF F + + A+ A
Sbjct: 45 GAEIFLGRLPRDCYEDELMPMLETVGRLIELRLMLDF-SGSTRGYAFALFENSKIARSAC 103
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L E++ G I S RLF G VPKN ++EF + + + G+ I L
Sbjct: 104 AKLDGYEIRHGHRIGVVKSVDNCRLFFGGVPKNKCKEEFMQELNKILEGIIDIYLYPSAH 163
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPDHSAAASQVK 283
+ + NRGF FV + ++ A +R+K++ L + + WADP+ P V
Sbjct: 164 DKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEVMENVT 223
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSA 335
AL+V+N+ N +KI+++FQ++ ++ P K K + F F+HY R +A
Sbjct: 224 ALFVRNLSLNMPQQKIRDIFQKNTKI-----PILKLKKINHFAFVHYENRKAA 271
>gi|380014848|ref|XP_003691428.1| PREDICTED: APOBEC1 complementation factor-like [Apis florea]
Length = 442
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 130/233 (55%), Gaps = 9/233 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+E+F+G LP+D E++L + E IG + E+RLM D SG ++G+AF SF + A++A
Sbjct: 54 GAEIFLGRLPRDCYEDELMPVLETIGYLIELRLMLD-FSGSTRGYAFASFEDVKTARRAC 112
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L E++ G I S RLF G VPKN +++EF + + + G+ I L
Sbjct: 113 AKLDGYEIRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEFMQELTKILEGIIDIYLYPSAH 172
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPDHSAAASQVK 283
+ + NRGF FV + ++ A +R+K++ L + + WADP+ P V
Sbjct: 173 DKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEIMESVT 232
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSA 335
AL+V+N+ + S +K++++FQ++ ++ P K K + F F+HY R +A
Sbjct: 233 ALFVRNLSLDMSQQKVRDIFQKNTKI-----PILKLKKINHFAFVHYESRQAA 280
>gi|383850788|ref|XP_003700956.1| PREDICTED: APOBEC1 complementation factor-like [Megachile
rotundata]
Length = 479
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 129/240 (53%), Gaps = 10/240 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+E+F+G LP+D E++L + E +G + E+RLM D SG ++G+AF F + A+ A
Sbjct: 60 GAEIFLGRLPRDCYEDELMPMLEKVGRLMELRLMLD-FSGSTRGYAFALFEDSKTARNAC 118
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L E++ G I S RLF G VPKN +++EF + + G+ I L
Sbjct: 119 AKLDGYEVRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEFMTELNKILEGITDIYLYPSAH 178
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPDHSAAASQVK 283
+ S NRGF FV + ++ A +R+K++ L + + WADP+ P V
Sbjct: 179 DKSLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEDVMENVT 238
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSALKAVKDT 342
AL+V+N+ + +KI+E+FQ+ ++ P K K + F FIHY R +A +AV D
Sbjct: 239 ALFVRNLSLDVQQQKIREIFQKSTKI-----PILKLKKINHFAFIHYESRQAA-QAVMDI 292
>gi|207080144|ref|NP_001128783.1| DKFZP469N2326 protein [Pongo abelii]
gi|55727921|emb|CAH90713.1| hypothetical protein [Pongo abelii]
Length = 550
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 128/230 (55%), Gaps = 11/230 (4%)
Query: 133 VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFI 191
++E+RLM D + G+++G+AFV + K AK+A+ EL++ E++ G+ + S RLFI
Sbjct: 54 IYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGACCSVDNCRLFI 112
Query: 192 GNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKML 251
G +PK +E + I V GV + + + +NRGF+FV Y ++ A +R+K++
Sbjct: 113 GGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 172
Query: 252 NANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEV 309
+L G+ + WA+P+ D + VK LYV+N+ T+ + IK+ F + G V
Sbjct: 173 PGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKILYVRNLMIETTEDTIKKSFGQFNPGCV 231
Query: 310 TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359
+V RD+ F+H+ R A+ A+ + E++G LEV LAKP
Sbjct: 232 ERV------KKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 275
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 33/189 (17%)
Query: 107 SEVFIGGLPKDASEEDLRD----LCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
+FIGG+PK E++ + + E + DV DK +++GFAFV + S A
Sbjct: 108 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKM--KNRGFAFVEYESHRAAA 165
Query: 163 KAIDELH--SKELKGKTIRCSLS-----------ETKNRLFIGNVPKNWTEDEFRKVIED 209
A +L +L G I + ET L++ N+ TED +K
Sbjct: 166 MARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQ 225
Query: 210 VGPG-VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWA 267
PG VE ++ I+D ++FV + + A ++ M N N +L+G+ ++ A
Sbjct: 226 FNPGCVERVKKIRD---------YAFVHFTSREDAVHA---MNNLNGTELEGSCLEVTLA 273
Query: 268 DPKSTPDHS 276
P +S
Sbjct: 274 KPVDKEQYS 282
>gi|332026193|gb|EGI66335.1| APOBEC1 complementation factor [Acromyrmex echinatior]
Length = 466
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 135/259 (52%), Gaps = 11/259 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+EVF+G LP+D E++L L E +G + E+RLM D SG ++G+AF F A+ A
Sbjct: 54 GAEVFLGRLPRDCYEDELMPLLEQVGRLLELRLMLDF-SGSTRGYAFALFEDSRVARIAC 112
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ L E++ G I S RLF G VPK T+ EF + + + G+ I + Q
Sbjct: 113 ERLDGYEIRPGHRIGVVKSMDNCRLFFGGVPKTKTKPEFMEELTKILDGITDIYVYPSAQ 172
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPDHSAAASQVK 283
+ + NRGF FV + ++ A +R+K++ L + + WADP+ P V
Sbjct: 173 DRNLNRGFIFVEFKDHRAAAMARRKLIPGKVMLWDHEIAVDWADPEPGDPIDEDIMETVT 232
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSALKAVKDT 342
AL+V+N+ + S +K++E+ R+ V P K K + F F+HY R +A +
Sbjct: 233 ALFVRNLALDMSQQKVREILYRYTNV-----PILKLKKINHFAFVHYENREAAKTVMNIM 287
Query: 343 EKYE--IDGQVLEVVLAKP 359
E+ + ++ Q E+ AKP
Sbjct: 288 ERPDSIVEKQGWEIRWAKP 306
>gi|328786224|ref|XP_001120281.2| PREDICTED: APOBEC1 complementation factor-like [Apis mellifera]
Length = 477
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 130/233 (55%), Gaps = 9/233 (3%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+E+F+G LP+D E++L + E IG + E+RLM D SG ++G+AF SF + A++A
Sbjct: 60 GAEIFLGRLPRDCYEDELMPVLETIGYLIELRLMLD-FSGSTRGYAFASFEDVKTARRAC 118
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+L E++ G I S RLF G VPKN +++EF + + + G+ I L
Sbjct: 119 AKLDGYEIRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEFMQELTKILEGIIDIYLYPSAH 178
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPDHSAAASQVK 283
+ + NRGF FV + ++ A +R+K++ L + + WADP+ P V
Sbjct: 179 DKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEIMESVT 238
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSA 335
AL+V+N+ + S +K++++FQ++ ++ P K K + F F+HY R +A
Sbjct: 239 ALFVRNLNLDMSQQKVRDIFQKNTKI-----PILKLKKINHFAFVHYENRQAA 286
>gi|357165062|ref|XP_003580257.1| PREDICTED: uncharacterized protein LOC100827844 [Brachypodium
distachyon]
Length = 783
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 137/247 (55%), Gaps = 11/247 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E DLR + +G++ EVRLM + + ++KGFAF+ + + E A++A+ +
Sbjct: 200 EVFVGGLDKDATESDLRKVFSEVGEISEVRLMMNPVTKKNKGFAFLRYATVEQARRAVSD 259
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + ++GK + S + LF+GN+ K WT++ + ++ + + L++D NP
Sbjct: 260 LKNPLVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKDKLKSYEVENFDDLILVEDSNNP 319
Query: 227 SRNRGFSFVLYYNN--ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRG++ + + A + R + +A F +D + +S+AD D A QV+
Sbjct: 320 GMNRGYALLEFSTRPEAMDAFRRLQKRDAVFGVD-RSAKVSFADSYPEVDDEMMA-QVRT 377
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+++ +P + +++K+ +++G + KV MP K ++DFGF+ + +A+ V
Sbjct: 378 IFLDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAK--RKDFGFVTFDTHDNAVACVD 435
Query: 341 DTEKYEI 347
EI
Sbjct: 436 GITSSEI 442
>gi|270002295|gb|EEZ98742.1| hypothetical protein TcasGA2_TC001297 [Tribolium castaneum]
Length = 672
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 136/259 (52%), Gaps = 8/259 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G+E+FIG LP D E++L L G ++ +RLM D G ++G+ F+S+ ++E A
Sbjct: 402 PPKGTEIFIGNLPPDLYEDELIPLFSQKGPIYNLRLMMD-FFGRTRGYGFISYFTQEDAH 460
Query: 163 KAIDELHSKELKGK-TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
A+ ++ +++ K I S+S RLFIGN+P++ T E + V+E G+ I
Sbjct: 461 AAVAAFNNYKIRNKGKIAVSMSVDNRRLFIGNIPRHVTLSEIQSVLEKYVEGIVDIIFYH 520
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+P N S NRGF FV + ++ A +R+++ N + G + WA+P + Q
Sbjct: 521 EPYNDSINRGFIFVEFESHRLAAIARRQLSPGNLTIWGKPIFVDWAEPLPVVN-PQILKQ 579
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
V LY+ N+P S+E++K + + ++ K K +F F+H+ R A +A +
Sbjct: 580 VTKLYLSNLPMTLSSEELKSFLCELLDPSHII----KVHKINNFAFVHFTLRKYAEEAFR 635
Query: 341 DTEKYEIDGQVLEVVLAKP 359
+ +++ V A+P
Sbjct: 636 KLTGLVMMDKLIGVEWARP 654
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 148/272 (54%), Gaps = 22/272 (8%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
GSE+F+G +P+D E++L L + +++ RLM D +G ++GFAFV++ + A+KA+
Sbjct: 30 GSEIFVGNIPRDLFEDELIPLFSQVAPIYKFRLMMD-FTGNTRGFAFVTYYNVWDAQKAV 88
Query: 166 DELHSKELKGKT----IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+ + + T + LS RLF GNVPK+ T D+ ++ G+ +++I
Sbjct: 89 LKFNKYCIASNTRKSQLTVHLSLDNCRLFFGNVPKDKTRDDIENELKKFIDGI--VKVIT 146
Query: 222 DPQNPSR--NRGFSFVLYYNNACADYSRQKML-NANFKLDGNTPTISWADPKSTPDHSAA 278
P+ + NRGF+FV + ++A A +R+K+L + + G + WA+P+ D
Sbjct: 147 YPERNAHHFNRGFAFVEFQSHAIAAIARRKLLADGVIRPWGRKLYVDWAEPEPMVD-PDV 205
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRH-GEVTKVVMPPGKSGKRD-FGFIHYAERSSAL 336
+QVK LY+KN+P + +++K + GE+ + KRD + FIH+ ERS A
Sbjct: 206 MTQVKVLYMKNVPTFWTLDRLKTYISKTVGEIF-----IERIYKRDNYAFIHFDERSFAE 260
Query: 337 KAVKD----TEKYEIDGQVLEVVLAKPQTDKK 364
+A+K ++ +G+ +EV A+P K
Sbjct: 261 RALKIFDSVSQYLSFNGKQIEVEWARPSCYSK 292
>gi|307181116|gb|EFN68850.1| Probable RNA-binding protein 46 [Camponotus floridanus]
Length = 471
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 132/259 (50%), Gaps = 11/259 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
GSE+F+G LP+D E++L + E +G + E+RLM D SG ++G+AF + + A++A
Sbjct: 53 GSEIFLGRLPRDCYEDELMPVLEQVGRLLELRLMLDF-SGSTRGYAFALYETPRIAREAC 111
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
L E++ G I S RLF G VPKN T+ EF + + + I L
Sbjct: 112 RRLDGYEIRRGHRIGVVKSMDNCRLFFGGVPKNKTKPEFMAELTKMLDDITDIYLYPSAH 171
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPDHSAAASQVK 283
+ S NRGF FV + ++ A +R+K++ L + + WADP+ P +V
Sbjct: 172 DRSLNRGFIFVEFKDHRAAAMARRKLIPGKVTLWDHEIAVDWADPEPGEPIDEDIMERVT 231
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSALKAVKDT 342
L+V+N+ + S + ++ +F RH V P K K + F FIHY R +A +
Sbjct: 232 TLFVRNLALDISQQNVRGIFHRHTNV-----PILKLKKINHFAFIHYENRQAAQIVMDIM 286
Query: 343 EK--YEIDGQVLEVVLAKP 359
+K ++ Q E+ AKP
Sbjct: 287 QKPGSIVEKQGWEICWAKP 305
>gi|110740397|dbj|BAF02093.1| hypothetical protein [Arabidopsis thaliana]
Length = 809
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 158/294 (53%), Gaps = 14/294 (4%)
Query: 77 HVEEEEKPTASVGEDEKDKHAQLLALPPNGS-EVFIGGLPKDASEEDLRDLCEPIGDVFE 135
H EE K +V +E++ H L E+F+G L K ASEEDL+ + +G+V E
Sbjct: 183 HAIEEVKHGETVDVEEEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTE 242
Query: 136 VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVP 195
VR++K+ ++ +SKG AF+ F + E AK+A+ EL S + GK + S+ + LF+GN+
Sbjct: 243 VRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNIC 302
Query: 196 KNWTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN 254
K WT + R+ ++ G ++ I L++D N + NRG++F+ + + + A + ++++ +
Sbjct: 303 KIWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKD 362
Query: 255 FKLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV- 312
P +S+ D + A QVK +++ + + + E++++L + +G++ KV
Sbjct: 363 VMFGVEKPAKVSFTDSFLDLEDEIMA-QVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVE 421
Query: 313 ---VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI----DGQVLEVVLAKP 359
MP + ++DFGF+ + +A+ K E+ D + L++P
Sbjct: 422 LARNMPSAR--RKDFGFVTFDTHEAAVSCAKFINNSELGEGEDKAKVRARLSRP 473
>gi|30689808|ref|NP_850422.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20147226|gb|AAM10328.1| At2g44720/F16B22.21 [Arabidopsis thaliana]
gi|23308467|gb|AAN18203.1| At2g44720/F16B22.21 [Arabidopsis thaliana]
gi|330255364|gb|AEC10458.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 809
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 158/294 (53%), Gaps = 14/294 (4%)
Query: 77 HVEEEEKPTASVGEDEKDKHAQLLALPPNGS-EVFIGGLPKDASEEDLRDLCEPIGDVFE 135
H EE K +V +E++ H L E+F+G L K ASEEDL+ + +G+V E
Sbjct: 183 HAIEEVKHGETVDVEEEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTE 242
Query: 136 VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVP 195
VR++K+ ++ +SKG AF+ F + E AK+A+ EL S + GK + S+ + LF+GN+
Sbjct: 243 VRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNIC 302
Query: 196 KNWTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN 254
K WT + R+ ++ G ++ I L++D N + NRG++F+ + + + A + ++++ +
Sbjct: 303 KIWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKD 362
Query: 255 FKLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV- 312
P +S+ D + A QVK +++ + + + E++++L + +G++ KV
Sbjct: 363 VMFGVEKPAKVSFTDSFLDLEDEIMA-QVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVE 421
Query: 313 ---VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI----DGQVLEVVLAKP 359
MP + ++DFGF+ + +A+ K E+ D + L++P
Sbjct: 422 LARNMPSAR--RKDFGFVTFDTHEAAVSCAKFINNSELGEGEDKAKVRARLSRP 473
>gi|332834232|ref|XP_001162562.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Pan
troglodytes]
Length = 502
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 129/227 (56%), Gaps = 11/227 (4%)
Query: 136 VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNV 194
+R+M D +G ++G+AFV+F +K AK AI +L++ E++ G+ + S RLF+G +
Sbjct: 1 MRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGI 59
Query: 195 PKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN 254
PK +E ++ V GV + + + ++NRGF+FV Y ++ A +R+K+L
Sbjct: 60 PKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGR 119
Query: 255 FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKV 312
+L G+ + WA+P+ D +S VK LYV+N+ +TS E I++ F + G V +V
Sbjct: 120 IQLWGHGIAVDWAEPEVEVDEDTMSS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV 178
Query: 313 VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359
RD+ F+H++ R A++A+K +DG +EV LAKP
Sbjct: 179 ------KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 219
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 31/181 (17%)
Query: 107 SEVFIGGLPKDASEE----DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
+F+GG+PK E +++ + E + DV DK +++GFAFV + S A
Sbjct: 52 CRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKT--KNRGFAFVEYESHRAAA 109
Query: 163 KAIDELH--SKELKGKTIRCSLSE-----------TKNRLFIGNVPKNWTEDEFRKVIED 209
A +L +L G I +E + L++ N+ + +E+ K +
Sbjct: 110 MARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN 169
Query: 210 VGPG-VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWAD 268
+ PG VE ++ I+D ++FV + N A K LN LDG+ ++ A
Sbjct: 170 IKPGAVERVKKIRD---------YAFVHFSNREDA-VEAMKALNGKV-LDGSPIEVTLAK 218
Query: 269 P 269
P
Sbjct: 219 P 219
>gi|449497953|ref|XP_004174289.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Taeniopygia guttata]
Length = 492
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 112/192 (58%), Gaps = 7/192 (3%)
Query: 175 GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
GK I +S NRLF+G++PK+ T+++ + V G+ + L P + +NRGF F
Sbjct: 93 GKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKKKNRGFCF 152
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNT 294
+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+V+N+ +
Sbjct: 153 LEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-KVKVLFVRNLANTV 211
Query: 295 STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354
+ E +++ F + G++ +V +D+ FIH+ ER A+KA+++ +++G+ +E+
Sbjct: 212 TEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 265
Query: 355 VLAKPQTDKKTE 366
V AKP K+ E
Sbjct: 266 VFAKPPDQKRKE 277
>gi|195569361|ref|XP_002102678.1| GD19374 [Drosophila simulans]
gi|194198605|gb|EDX12181.1| GD19374 [Drosophila simulans]
Length = 350
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 115/198 (58%), Gaps = 8/198 (4%)
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
L + E+K GK ++ ++S RLF+GN+PK+ +DE + + G+ + + P +
Sbjct: 5 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIYSSPDDK 64
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+VK LY
Sbjct: 65 KKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQ-TMSKVKVLY 123
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
V+N+ + S +K+KE F+++G+V +V +D+ FIH+ +R SA++A++ E
Sbjct: 124 VRNLTQDVSEDKLKEQFEQYGKVERV------KKIKDYAFIHFEDRDSAVEAMRGLNGKE 177
Query: 347 IDGQVLEVVLAKPQTDKK 364
I +EV LAKP +DKK
Sbjct: 178 IGASNIEVSLAKPPSDKK 195
>gi|414586039|tpg|DAA36610.1| TPA: hypothetical protein ZEAMMB73_089352 [Zea mays]
gi|414586040|tpg|DAA36611.1| TPA: RNA recognition water-stress protein1, mRNA isoform 2 [Zea
mays]
gi|414586041|tpg|DAA36612.1| TPA: hypothetical protein ZEAMMB73_089352 [Zea mays]
Length = 794
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 136/249 (54%), Gaps = 15/249 (6%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
E+F+GGL KDA+E DL + +G++ EVRLM + + ++KGFAF+ + + E A++A+ E
Sbjct: 213 EIFVGGLDKDATENDLMKVFGEVGEITEVRLMMNPVTKKNKGFAFLRYATVEQARRAVSE 272
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE---LIKDPQ 224
L + ++GK + S + LF+GN+ K WT++ + ++ GVE+ + L +D
Sbjct: 273 LKNPLVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKDKLKSY--GVESFDDLLLAEDTN 330
Query: 225 NPSRNRGFSFVLYYNN--ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
NP NRG++ + + A + + + F +D + +S+AD D A QV
Sbjct: 331 NPGMNRGYALLEFSTRPEAMDAFRTLQKRDVVFGVD-RSAKVSFADSYPQVDDEIMA-QV 388
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIHYAERSSALKA 338
+ +++ +P + +++K+ +++G + KV MP K ++DFGF+ + +A+
Sbjct: 389 RTVFLDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAK--RKDFGFVTFDTHDNAVAC 446
Query: 339 VKDTEKYEI 347
+ EI
Sbjct: 447 TEGMSNSEI 455
>gi|356531832|ref|XP_003534480.1| PREDICTED: uncharacterized protein LOC100811387 [Glycine max]
Length = 778
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 139/239 (58%), Gaps = 11/239 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E DL+ + +G V EVRLM + ++ +KGFAF+ F + E A++A+ E
Sbjct: 193 EVFVGGLDKDATEHDLKKVFGKVGVVTEVRLMINPQTKRNKGFAFLRFETVEQARRAVVE 252
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + + GK + S+ + L++GN+ K W ++ ++ ++ G VE + LI+D N
Sbjct: 253 LKNPVINGKRCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVEDVEDLTLIEDDTNE 312
Query: 227 SRNRGFSFVLYYNNACAD--YSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + + + A Y R + + F +D +S+AD A QVK
Sbjct: 313 GMNRGFAFLEFSSRSDAKEAYKRLQKRDVAFGVD-KPAKVSFADSFIDLGDEIMA-QVKT 370
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIHYAERSSALKAV 339
+++ ++P + + + +++L +++GE+ KV MP + ++++GF+ ++ +A++
Sbjct: 371 VFIDSLPPSWNEDYVRDLLKKYGEIEKVELAKDMPAAR--RKNYGFVTFSTHVAAVECA 427
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI LP +E+ +RDL + G++ +V L KD + K + FV+F + A + D +
Sbjct: 371 VFIDSLPPSWNEDYVRDLLKKYGEIEKVELAKDMPAARRKNYGFVTFSTHVAAVECADSI 430
Query: 169 HSKEL----KGKTIRCSLS 183
S L K +R LS
Sbjct: 431 TSAGLGEGDKKAKVRARLS 449
>gi|355715825|gb|AES05414.1| RNA binding motif protein 47 [Mustela putorius furo]
Length = 387
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 119/218 (54%), Gaps = 10/218 (4%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEF 203
G+++G+AFV + K AK+A+ EL++ E++ G+ + S RLFIG +PK +E
Sbjct: 1 GKNRGYAFVMYCHKSEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 60
Query: 204 RKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263
+ I V GV + + + +NRGF+FV Y ++ A +R+K++ +L G+
Sbjct: 61 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 120
Query: 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGK 321
+ WA+P+ D + VK LYV+N+ T+ + IK+ F + G V +V
Sbjct: 121 VDWAEPEIDVDEDVMET-VKILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKI 173
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359
RD+ F+H+ R A+ A+ + E++G LEV LAKP
Sbjct: 174 RDYAFVHFVSREDAVHAMNNLNGTELEGSCLEVTLAKP 211
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 33/189 (17%)
Query: 107 SEVFIGGLPKDASEEDLRD----LCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
+FIGG+PK E++ + + E + DV DK +++GFAFV + S A
Sbjct: 44 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKM--KNRGFAFVEYESHRAAA 101
Query: 163 KAIDELH--SKELKGKTIRCSLS-----------ETKNRLFIGNVPKNWTEDEFRKVIED 209
A +L +L G I + ET L++ N+ TED +K
Sbjct: 102 MARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQ 161
Query: 210 VGPG-VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWA 267
PG VE ++ I+D ++FV + + A ++ M N N +L+G+ ++ A
Sbjct: 162 FNPGCVERVKKIRD---------YAFVHFVSREDAVHA---MNNLNGTELEGSCLEVTLA 209
Query: 268 DPKSTPDHS 276
P +S
Sbjct: 210 KPVDKEQYS 218
>gi|323650030|gb|ADX97101.1| APOBEC1 complementation factor [Perca flavescens]
Length = 450
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 120/219 (54%), Gaps = 10/219 (4%)
Query: 144 SGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDE 202
+G ++G+AFV+F +K AK A+ +L++ E++ G+ + S RLF+G +PK +E
Sbjct: 2 NGNNRGYAFVTFGNKLEAKAAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 61
Query: 203 FRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262
+ V GV + + + S+NRGF+FV Y ++ A +R+K+L +L G+
Sbjct: 62 ILTEMRKVTDGVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAI 121
Query: 263 TISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSG 320
+ WA+P+ D AS VK LYV+N+ T+ E I++ F R G V +V
Sbjct: 122 AVDWAEPEVEVDEDTMAS-VKILYVRNLMLQTTEETIEKEFNSLRPGAVERV------KK 174
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359
RD+ F+H+ +R A+ A+ +DG +EV LAKP
Sbjct: 175 IRDYAFVHFTQREDAINAMNALNGKVVDGSPIEVTLAKP 213
>gi|222629297|gb|EEE61429.1| hypothetical protein OsJ_15642 [Oryza sativa Japonica Group]
Length = 730
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 137/258 (53%), Gaps = 22/258 (8%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E DLR + +G++ EVRLM + + ++KGFAF+ + + E A++A+ E
Sbjct: 136 EVFVGGLDKDATESDLRKVFGEVGEITEVRLMMNPVTKKNKGFAFLRYATVEQARRAVSE 195
Query: 168 LHSKE-----------LKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVE 215
L + ++GK + S + LF+GN+ K WT++ ++ ++ G +
Sbjct: 196 LKNPSVGLKIWIFYIMVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKEKLKSYGVENFD 255
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNN--ACADYSRQKMLNANFKLDGNTPTISWADPKSTP 273
+ L++D NP NRG++ + + A + R + + F +D + +S+AD
Sbjct: 256 DLLLVEDSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDVVFGVD-RSAKVSFADSYPEV 314
Query: 274 DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV----VMPPGKSGKRDFGFIHY 329
D A QV+ +++ +P + +++K+ +++G + KV MP K ++DFGF+ +
Sbjct: 315 DDEIMA-QVRTVFIDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAK--RKDFGFVTF 371
Query: 330 AERSSALKAVKDTEKYEI 347
+A+ EI
Sbjct: 372 DTHDNAVACADGITNSEI 389
>gi|356568565|ref|XP_003552481.1| PREDICTED: uncharacterized protein LOC100808583 [Glycine max]
Length = 785
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 138/239 (57%), Gaps = 11/239 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+E DL+ + +G V EVRLM + ++ +KGFAF+ F + E A++A+ E
Sbjct: 199 EVFVGGLDKDATEHDLKKVFGKVGVVTEVRLMINPQTKRNKGFAFLRFETVEQARRAVVE 258
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNP 226
L + + GK + S+ + L++GN+ K W ++ ++ ++ G VE + LI+D N
Sbjct: 259 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVENVEDLTLIEDGTNE 318
Query: 227 SRNRGFSFVLYYNNACAD--YSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
NRGF+F+ + + + A Y R + + F +D +S+AD A QVK
Sbjct: 319 GMNRGFAFLEFSSRSDAKEAYRRLQKRDVAFGVD-KPAKVSFADSFIDLGDEIMA-QVKT 376
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVV----MPPGKSGKRDFGFIHYAERSSALKAV 339
++V ++P + +++L +++GE+ K+ MP + ++++GF+ ++ ++A++
Sbjct: 377 VFVDSLPPSWDEVYVRDLLKKYGEIEKIELAKDMPAAR--RKNYGFVTFSTHAAAVECA 433
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VF+ LP E +RDL + G++ ++ L KD + K + FV+F + A + D +
Sbjct: 377 VFVDSLPPSWDEVYVRDLLKKYGEIEKIELAKDMPAARRKNYGFVTFSTHAAAVECADSI 436
Query: 169 HSKEL----KGKTIRCSLS 183
S L K +R LS
Sbjct: 437 TSAGLGEGDKKAKVRARLS 455
>gi|9502153|gb|AAF88006.1| contains similarity to Pfam family PF00076 (RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)), score=42.1,
E=1.3e-08, N=1 [Arabidopsis thaliana]
Length = 298
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 104/216 (48%), Gaps = 90/216 (41%)
Query: 137 RLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPK 196
++M++KE G+ KG+ FV+FR K+ A +AID L+ N +F
Sbjct: 106 KIMREKEPGDGKGYPFVTFRCKDLAAEAIDNLN-----------------NTVF------ 142
Query: 197 NWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK 256
++PQN RNRGF+F+ YYN+
Sbjct: 143 ------------------------REPQNMGRNRGFAFIEYYNH---------------- 162
Query: 257 LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPP 316
VKALY+KN+P + + E++K LF+ HG++ KVV+PP
Sbjct: 163 -------------------------VKALYIKNLPRDITQERLKALFEHHGKILKVVIPP 197
Query: 317 GKSGKRD--FGFIHYAERSSALKAVKDTEKYEIDGQ 350
K GK D +GF+HYAER+S ++A+K+TE+YEIDG
Sbjct: 198 AKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDGH 233
>gi|91077966|ref|XP_967803.1| PREDICTED: similar to APOBEC1 complementation factor [Tribolium
castaneum]
Length = 363
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 148/272 (54%), Gaps = 22/272 (8%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
GSE+F+G +P+D E++L L + +++ RLM D +G ++GFAFV++ + A+KA+
Sbjct: 30 GSEIFVGNIPRDLFEDELIPLFSQVAPIYKFRLMMD-FTGNTRGFAFVTYYNVWDAQKAV 88
Query: 166 DELHSKELKGKT----IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+ + + T + LS RLF GNVPK+ T D+ ++ G+ +++I
Sbjct: 89 LKFNKYCIASNTRKSQLTVHLSLDNCRLFFGNVPKDKTRDDIENELKKFIDGI--VKVIT 146
Query: 222 DPQNPSR--NRGFSFVLYYNNACADYSRQKML-NANFKLDGNTPTISWADPKSTPDHSAA 278
P+ + NRGF+FV + ++A A +R+K+L + + G + WA+P+ D
Sbjct: 147 YPERNAHHFNRGFAFVEFQSHAIAAIARRKLLADGVIRPWGRKLYVDWAEPEPMVDPD-V 205
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRH-GEVTKVVMPPGKSGKRD-FGFIHYAERSSAL 336
+QVK LY+KN+P + +++K + GE+ + KRD + FIH+ ERS A
Sbjct: 206 MTQVKVLYMKNVPTFWTLDRLKTYISKTVGEIF-----IERIYKRDNYAFIHFDERSFAE 260
Query: 337 KAVKD----TEKYEIDGQVLEVVLAKPQTDKK 364
+A+K ++ +G+ +EV A+P K
Sbjct: 261 RALKIFDSVSQYLSFNGKQIEVEWARPSCYSK 292
>gi|348580335|ref|XP_003475934.1| PREDICTED: probable RNA-binding protein 46-like [Cavia porcellus]
Length = 436
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 129/258 (50%), Gaps = 47/258 (18%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G + E RLM + SGE++G+AFV++ +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDEL--VFERAGKIHEFRLMMEF-SGENRGYAFVTYTTKEEAQLAIR 117
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E I+ V GV + + +
Sbjct: 118 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEIKKVTEGVVDVIVYPSATD 177
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y H AAA +VK L
Sbjct: 178 KTKNRGFAFVKY-----------------------------------ESHRAAAMRVKVL 202
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
+V+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 203 FVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVIS 256
Query: 344 KYEIDGQVLEVVLAKPQT 361
IDG +EV LAKP +
Sbjct: 257 GKCIDGASIEVTLAKPHS 274
>gi|297611571|ref|NP_001067623.2| Os11g0250000 [Oryza sativa Japonica Group]
gi|255679961|dbj|BAF27986.2| Os11g0250000 [Oryza sativa Japonica Group]
Length = 94
Score = 115 bits (288), Expect = 6e-23, Method: Composition-based stats.
Identities = 52/77 (67%), Positives = 65/77 (84%), Gaps = 1/77 (1%)
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAV 339
QVK +YVKN+P+N S EKIKE+F++HGEVTKVV+PP K G KRDFGF+H+AERSSALKAV
Sbjct: 6 QVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRDFGFVHFAERSSALKAV 65
Query: 340 KDTEKYEIDGQVLEVVL 356
K +EKYE +G V + +
Sbjct: 66 KGSEKYEFNGNVFSLFI 82
Score = 39.7 bits (91), Expect = 3.6, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 100 LALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
+ P +++ LP++AS+E ++++ E G+V +V L K+ G + F FV F +
Sbjct: 1 MTFPLQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKD-GHKRDFGFVHFAERS 59
Query: 160 FAKKAIDELHSKELKG 175
A KA+ E G
Sbjct: 60 SALKAVKGSEKYEFNG 75
>gi|222636973|gb|EEE67105.1| hypothetical protein OsJ_24114 [Oryza sativa Japonica Group]
Length = 624
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 150/297 (50%), Gaps = 18/297 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGES-KGFAFVSFRSKEFAKKAI 165
EV +GGLP+DA+EED+ GDV EVRL++D S KGFAFV F + A+ A
Sbjct: 90 CEVLVGGLPRDAAEEDVARALADAGDVEEVRLVRDPADPRSNKGFAFVRFAAAWQARWAA 149
Query: 166 DELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQ 224
D++ + +KG+ ++ L + N+ +WT+D+ + ++ +E I L++DP+
Sbjct: 150 DDVRTAMVKGEACMICKNDANETLHLRNICFDWTKDDLAEELKTYKLENLEDINLVEDPE 209
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAAASQVK 283
+NRG++F+ + N + K+ N + L + +S++ S D +VK
Sbjct: 210 RKGKNRGYAFLDFRTNVDGVDAFFKLQNRDIYLGTDVRAQVSFSKTLSLDD--KIMEKVK 267
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG--KSGKRDFGFIHYAERSSALKAVKD 341
++++ +P + +K++E+F + GE+ + + K+ ++DFGFI + R SAL +
Sbjct: 268 SVFLDGLPPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQSALDCIST 327
Query: 342 TEK---YEIDGQV-LEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYG 394
K E G+V ++ L +P+ K +P L GF G YG
Sbjct: 328 VSKGGIVEGSGKVRIKASLQRPRPTLKKHSWQGITPML-------GIRRGFIGKSYG 377
>gi|34395354|dbj|BAC84424.1| water-stress protein-like protein [Oryza sativa Japonica Group]
Length = 465
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 150/297 (50%), Gaps = 18/297 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGES-KGFAFVSFRSKEFAKKAI 165
EV +GGLP+DA+EED+ GDV EVRL++D S KGFAFV F + A+ A
Sbjct: 90 CEVLVGGLPRDAAEEDVARALADAGDVEEVRLVRDPADPRSNKGFAFVRFAAAWQARWAA 149
Query: 166 DELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQ 224
D++ + +KG+ ++ L + N+ +WT+D+ + ++ +E I L++DP+
Sbjct: 150 DDVRTAMVKGEACMICKNDANETLHLRNICFDWTKDDLAEELKTYKLENLEDINLVEDPE 209
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAAASQVK 283
+NRG++F+ + N + K+ N + L + +S++ S D +VK
Sbjct: 210 RKGKNRGYAFLDFRTNVDGVDAFFKLQNRDIYLGTDVRAQVSFSKTLSLDD--KIMEKVK 267
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG--KSGKRDFGFIHYAERSSALKAVKD 341
++++ +P + +K++E+F + GE+ + + K+ ++DFGFI + R SAL +
Sbjct: 268 SVFLDGLPPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQSALDCIST 327
Query: 342 TEK---YEIDGQV-LEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYG 394
K E G+V ++ L +P+ K +P L GF G YG
Sbjct: 328 VSKGGIVEGSGKVRIKASLQRPRPTLKKHSWQGITPMLGIRR-------GFIGKSYG 377
>gi|116781130|gb|ABK21976.1| unknown [Picea sitchensis]
Length = 219
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 104/175 (59%), Gaps = 4/175 (2%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL KDA+EEDLR + +G+V E+RLM + ++ ++KGFAF+ + + E AK+A E
Sbjct: 36 EVFVGGLDKDAAEEDLRKVFSEVGEVVEIRLMMNAQTQKNKGFAFIRYATVEQAKRACTE 95
Query: 168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP-GVETIELIKDPQNP 226
L + ++ GK S S+ + LF+GN+ K WT++ R+ ++ +E + L++DP+N
Sbjct: 96 LKNPQVNGKVCGISPSQDNDTLFLGNICKTWTKEALREKLKSFSIDNIEDLTLVEDPENE 155
Query: 227 SRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
NRG +F+ + ++A Y R + + D T +S+A+ PD A
Sbjct: 156 GMNRGIAFIEFSARSDAMNAYKRLQKRDVVLGTD-RTAKVSFAETFVDPDEEVMA 209
>gi|256078322|ref|XP_002575445.1| apobec-1 complementation factor-related [Schistosoma mansoni]
gi|350644243|emb|CCD61005.1| apobec-1 complementation factor-related [Schistosoma mansoni]
Length = 771
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 133/265 (50%), Gaps = 39/265 (14%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP G EVFIG +P+D E++L + E IG ++ RLM + +G ++GF F + ++E K
Sbjct: 100 PPRGCEVFIGKIPRDCFEDELIPVFEQIGPIYMFRLMMEL-NGINRGFGFCVYTNREDTK 158
Query: 163 KAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
+A+ EL+ + + K R +E+E ++ V GV+ +
Sbjct: 159 RAVQELNIMKFE-----------KER---------QSEEEILSEMKRVTDGVKDVISYPS 198
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
+ ++NRGF+F+ Y ++ A +R+K+L + L G+ + WA+P+ + S+V
Sbjct: 199 VTDKTKNRGFAFIEYGSHKAAAMARRKLLPGHIHLWGHQIAVDWAEPEREVNED-IMSKV 257
Query: 283 KALYVKNIPDNTSTEKIKELFQRHG--------EVTKVVMPPGKSGKRDFGFIHYAERSS 334
K LYV+N+ +T+ E +++ F + V K+ D+ FIH+ ER
Sbjct: 258 KILYVRNLMLSTTEESLRDSFIKAAGGDPNSVERVKKI---------SDYAFIHFREREQ 308
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKP 359
AL+ + IDG +EV AKP
Sbjct: 309 ALQCLHTLNDTYIDGSKIEVTWAKP 333
>gi|242047592|ref|XP_002461542.1| hypothetical protein SORBIDRAFT_02g004470 [Sorghum bicolor]
gi|241924919|gb|EER98063.1| hypothetical protein SORBIDRAFT_02g004470 [Sorghum bicolor]
Length = 551
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 126/246 (51%), Gaps = 5/246 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+EVF+ GL EED+R + G++ +VR+ D + +SKG+ FV +R AKK +
Sbjct: 267 TEVFVCGLDGSMKEEDVRSVFGWAGEITQVRMAMDARTWKSKGYCFVRYREPSQAKKVVA 326
Query: 167 ELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQN 225
E ++ K + + +++ + N+ K W +++ K++ G ++ + L+ D N
Sbjct: 327 EFCKWKICWKLCQVEAVDGNDKIVLENIDKKWKKEDIMKLLHKTGVENIDKVTLMADCDN 386
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
P N G++F+ A + K+ T++WA K+ D QVK++
Sbjct: 387 PGYNCGYAFLELETERDAWMAYIKLSRKGVFRRCLNITVAWA--KAMSDRDEEMQQVKSI 444
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG-KSGKR-DFGFIHYAERSSALKAVKDTE 343
+V+ IP++ K+ E+F ++G + + V+ +S KR DF F+HY +A+ ++ +
Sbjct: 445 FVEGIPESWDNLKLTEIFSKYGVIQRTVLSHDIQSAKRSDFAFVHYTTHEAAILCLELFD 504
Query: 344 KYEIDG 349
K E+ G
Sbjct: 505 KEELTG 510
>gi|296089276|emb|CBI39048.3| unnamed protein product [Vitis vinifera]
Length = 400
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 127/226 (56%), Gaps = 8/226 (3%)
Query: 141 DKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTE 200
+ ++G++KG+AF+ F AK+A+ + E+ GK + E + +F+GN+ KNW
Sbjct: 2 NSKTGKNKGYAFLRFALASDAKRALAKYPKIEICGKQCGTAPVEGNDTIFLGNIDKNWKN 61
Query: 201 DEFRKVIEDVGP-GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259
++ K+++++G ++ + ++ DP N RNRGF+F+ N A + +K+ +
Sbjct: 62 EDVVKLLQEIGIDKIDKVTVMVDPSNIERNRGFAFLELETNKDAQLAYKKLQKKDVFGKH 121
Query: 260 NTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG-- 317
++WA+P + PD +VK +Y + IP + EK+++ F++ GE+ VV+
Sbjct: 122 QNIKVAWAEPLNEPDEDEML-KVKTVYAEYIPSSWEEEKVRDCFKKFGEIESVVLARNLR 180
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEK---YEIDGQV-LEVVLAKP 359
S ++DF F+ Y R +AL+ ++ + ++ + +V ++V LAKP
Sbjct: 181 SSKRKDFAFVKYTTREAALECIESFSREPLHDAECKVKVKVSLAKP 226
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 86/170 (50%), Gaps = 23/170 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGE-SKGFAFVSFRSKEFAKKAI 165
+F+G + K+ ED+ L + IG + +V +M D + E ++GFAF+ + + A+ A
Sbjct: 50 IFLGNIDKNWKNEDVVKLLQEIGIDKIDKVTVMVDPSNIERNRGFAFLELETNKDAQLAY 109
Query: 166 DELHSKELKGK--TIRCSLSETKNR-----------LFIGNVPKNWTEDEFRKVIEDVGP 212
+L K++ GK I+ + +E N ++ +P +W E++ R + G
Sbjct: 110 KKLQKKDVFGKHQNIKVAWAEPLNEPDEDEMLKVKTVYAEYIPSSWEEEKVRDCFKKFGE 169
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACA-----DYSRQKMLNANFKL 257
+E++ L ++ ++ S+ + F+FV Y A +SR+ + +A K+
Sbjct: 170 -IESVVLARNLRS-SKRKDFAFVKYTTREAALECIESFSREPLHDAECKV 217
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE- 167
V+ +P EE +RD + G++ V L ++ S + K FAFV + ++E A + I+
Sbjct: 146 VYAEYIPSSWEEEKVRDCFKKFGEIESVVLARNLRSSKRKDFAFVKYTTREAALECIESF 205
Query: 168 ----LHSKELKGKTIRCSLSE 184
LH E K K ++ SL++
Sbjct: 206 SREPLHDAECKVK-VKVSLAK 225
>gi|359488537|ref|XP_003633774.1| PREDICTED: uncharacterized protein LOC100853981 [Vitis vinifera]
Length = 787
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 121/216 (56%), Gaps = 15/216 (6%)
Query: 130 IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRL 189
G++ EVR+M D ++G+SKG+ FV F +KE A KAI E ++GK I S + L
Sbjct: 200 CGEIIEVRMMTD-QNGKSKGYCFVRFTTKEAANKAIKEKSGFMVEGKKIGVVPSTDQTTL 258
Query: 190 FIGNVPKNWTEDEFRKVIEDVGPGVETIELI-------KDPQNPSRNRGFSFVLYYNNAC 242
F GN+PK+W+ DEF K++ V +++L +NRGF+FV + ++A
Sbjct: 259 FFGNLPKDWSPDEFDKMVCQAFQDVTSVDLAMPFGSGDTSLGQKQQNRGFAFVKFSSHAA 318
Query: 243 ADYSRQKMLNANFKL-DGNTPTISWA-DPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300
A + + ++F L D P + WA +P+ P+ A ++ +V N+P + + + +K
Sbjct: 319 AARAHRMGSKSDFLLGDSWHPVVEWAEEPEIDPEELA---KITIAFVGNLPKDANEDYLK 375
Query: 301 ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+LF G+V KV++ K G+ GF+H+A+RS L
Sbjct: 376 KLFGPFGKVEKVLL--SKKGQSPVGFVHFAKRSCLL 409
>gi|170034902|ref|XP_001845311.1| heterogeneous nuclear ribonucleoprotein r [Culex quinquefasciatus]
gi|167876604|gb|EDS39987.1| heterogeneous nuclear ribonucleoprotein r [Culex quinquefasciatus]
Length = 542
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 99/176 (56%), Gaps = 16/176 (9%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
+F G +PK+ EDE + E G + + L+ DP + NRG++FV + SR
Sbjct: 181 VFCGKIPKDMYEDELIPLFEKCGK-IWDLRLMMDPMTGT-NRGYAFVTFT-------SRD 231
Query: 249 KMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
NA ++ G + WADP+ PD S+VK LYV+N+ +TS EK+KE F+ G+
Sbjct: 232 AACNAVREVWGCDIIVDWADPQEEPDEQTM-SKVKVLYVRNLTQDTSEEKLKESFEAFGK 290
Query: 309 VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
V +V +D+ F+H+ +R A+ A+KD + +I+G +EV LAKP +DKK
Sbjct: 291 VERV------KKIKDYAFVHFEDRDHAVNAMKDLDGKDINGSAIEVSLAKPPSDKK 340
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 98/177 (55%), Gaps = 22/177 (12%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P NG EVF G +PKD E++L L E G ++++RLM D +G ++G+AFV+F S++ A
Sbjct: 175 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAC 234
Query: 163 KAIDELHSKEL-------KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A+ E+ ++ + + ++S+ K L++ N+ ++ +E++ ++ E G VE
Sbjct: 235 NAVREVWGCDIIVDWADPQEEPDEQTMSKVK-VLYVRNLTQDTSEEKLKESFEAFGK-VE 292
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKS 271
++ IKD ++FV + + D++ M + + K ++G+ +S A P S
Sbjct: 293 RVKKIKD---------YAFVHFEDR---DHAVNAMKDLDGKDINGSAIEVSLAKPPS 337
>gi|414589121|tpg|DAA39692.1| TPA: hypothetical protein ZEAMMB73_249765 [Zea mays]
Length = 618
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 15/246 (6%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD-KESGESKGFAFVSFRSKEFAKKAID 166
EVF+ GLP+DA+EED+ GD+ EVRL++D + +KGFAFV F + A+ A +
Sbjct: 111 EVFVSGLPQDAAEEDVAQALADAGDIEEVRLVRDPADQRLNKGFAFVRFAAAWQARWAAN 170
Query: 167 ELHSKELKGKTI-RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP----GVETIELIK 221
+L +KGK C SET+ L + N+ +W++D+ + E + P ++ I LI+
Sbjct: 171 DLREATIKGKACGICKNSETET-LHLRNICFDWSKDD---LAEKLKPFKLENLDRINLIE 226
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAAAS 280
P +NRG++F+ + + A + K+ + L ++ IS+++ S D
Sbjct: 227 HPDRKGKNRGYAFLDFRTHVDAVEAFVKLQKIDLYLGTDSRANISFSNTLSQDD--EIME 284
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG--KSGKRDFGFIHYAERSSALKA 338
+VK++++ +P + +K++E+F + GE+ + + + ++DFGFI + R SAL
Sbjct: 285 KVKSVFLDGVPPHWDEDKVREIFGKFGEIDSIQLARNMFTAARKDFGFIGFTARQSALDC 344
Query: 339 VKDTEK 344
+K K
Sbjct: 345 IKMVNK 350
>gi|397478947|ref|XP_003810795.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
paniscus]
Length = 557
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 115/201 (57%), Gaps = 8/201 (3%)
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
E S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 149 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 208
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L
Sbjct: 209 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVL 267
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345
+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 268 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGK 321
Query: 346 EIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 322 EIEGEEIEIVLAKPPDKKRKE 342
>gi|313233215|emb|CBY24330.1| unnamed protein product [Oikopleura dioica]
Length = 254
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 99 LLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK 158
L P G+E+FIG LP+D E++L + E G VFE+R+M D +G ++GF FV+++++
Sbjct: 68 LTGKPEKGTEIFIGKLPRDLFEDELYPVLESYGPVFELRMMLDF-NGNNRGFCFVTYQTR 126
Query: 159 EFAKKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
++ A+ +++ E+ KG+ + S RLF+G +PK+ DE + ++ V GV +
Sbjct: 127 NESQAALKGINNFEIRKGRLLGACQSVDNCRLFVGGIPKSKKRDEIMEEMKKVTEGVVDV 186
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
+ + S+NRGFSFV Y ++ A +R+K++ +L G+ + WA+P
Sbjct: 187 IVYPSAADKSKNRGFSFVEYKDHKAAAMARRKLMPGRIQLWGHQIAVDWAEP 238
>gi|194386954|dbj|BAG59843.1| unnamed protein product [Homo sapiens]
Length = 473
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 115/201 (57%), Gaps = 8/201 (3%)
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
E S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 65 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVAEGLVDVILYHQPDD 124
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L
Sbjct: 125 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVL 183
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345
+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 184 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGK 237
Query: 346 EIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 238 EIEGEEIEIVLAKPPDKKRKE 258
>gi|351698414|gb|EHB01333.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 402
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 120/210 (57%), Gaps = 8/210 (3%)
Query: 158 KEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
KE A++A+ S E+ GK + +S NRLF+G++PKN T++ + V G+
Sbjct: 20 KEAAQEAVKLCDSYEICPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVD 79
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276
+ L P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD
Sbjct: 80 VILYHQPDDKKKNRGFRFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPE 139
Query: 277 AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
A +VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+
Sbjct: 140 VMA-KVKVLFVRNLVTRVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAV 192
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
KA+ + EI+G+ +E+VLAKP K+ E
Sbjct: 193 KAMDEMNGKEIEGEEIEIVLAKPPDKKRKE 222
>gi|149024313|gb|EDL80810.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Rattus
norvegicus]
Length = 447
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 115/201 (57%), Gaps = 8/201 (3%)
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
E S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 166 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 225
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L
Sbjct: 226 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVL 284
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345
+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 285 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGK 338
Query: 346 EIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 339 EIEGEEIEIVLAKPPDKKRKE 359
>gi|148697994|gb|EDL29941.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 607
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 115/201 (57%), Gaps = 8/201 (3%)
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
E S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 200 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 259
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L
Sbjct: 260 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVL 318
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345
+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 319 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGK 372
Query: 346 EIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 373 EIEGEEIEIVLAKPPDKKRKE 393
>gi|296207004|ref|XP_002750459.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Callithrix jacchus]
Length = 473
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 115/201 (57%), Gaps = 8/201 (3%)
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
E S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 65 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 124
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L
Sbjct: 125 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVL 183
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345
+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 184 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGK 237
Query: 346 EIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 238 EIEGEEIEIVLAKPPDKKRKE 258
>gi|73950230|ref|XP_866516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Canis lupus familiaris]
gi|297282473|ref|XP_002802272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 4
[Macaca mulatta]
gi|332244976|ref|XP_003271639.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Nomascus leucogenys]
gi|332807935|ref|XP_003307913.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
troglodytes]
gi|402853340|ref|XP_003891354.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Papio anubis]
Length = 473
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 115/201 (57%), Gaps = 8/201 (3%)
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
E S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 65 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 124
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L
Sbjct: 125 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVL 183
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345
+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 184 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGK 237
Query: 346 EIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 238 EIEGEEIEIVLAKPPDKKRKE 258
>gi|338722117|ref|XP_003364487.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Equus caballus]
Length = 473
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 115/201 (57%), Gaps = 8/201 (3%)
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
E S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P +
Sbjct: 65 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 124
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
+NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L
Sbjct: 125 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVL 183
Query: 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345
+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 184 FVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGK 237
Query: 346 EIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 238 EIEGEEIEIVLAKPPDKKRKE 258
>gi|170057401|ref|XP_001864467.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876865|gb|EDS40248.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 741
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 133/258 (51%), Gaps = 6/258 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EV+ +P + +E +L + E G ++E+RLM D + +++ + FV + ++E A+
Sbjct: 109 PGYGCEVYAKRIPANFTEVNLVPIFERCGRLYEIRLMMDY-NNQNRRYCFVRYTNEEDAR 167
Query: 163 KAIDELHSKELKG-KTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI+ L+ ++G +TI S K RLF+ N+PK + P + + +
Sbjct: 168 LAIELLNHHFVRGNQTIEVQKSFEKCRLFVANLPKELDRKTIEVSFRSLFPEMTRLVMHN 227
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ + NRGF+F+ + ++ A ++++ ++ I WA+P+ DHS A +
Sbjct: 228 RIADGTTNRGFAFMDFPDHGSALRAKKQTTPGCLRMWDRDIKIVWANPQRALDHS-NADE 286
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ ST+++ LF R + +V S R+F F+ + R A A+
Sbjct: 287 VKTLFVRNVDLQVSTKELYMLFSRVVDRQDIV---KISRVREFAFVEFTRRFHAAFAMHA 343
Query: 342 TEKYEIDGQVLEVVLAKP 359
+ ++++G L++ A P
Sbjct: 344 VQGFQLNGYTLDIEWAMP 361
>gi|296082223|emb|CBI21228.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 128/241 (53%), Gaps = 20/241 (8%)
Query: 139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW 198
M ++G+SKG+ FV F +KE A KAI E ++GK I S + LF GN+PK+W
Sbjct: 1 MMTDQNGKSKGYCFVRFTTKEAANKAIKEKSGFMVEGKKIGVVPSTDQTTLFFGNLPKDW 60
Query: 199 TEDEFRKVIEDVGPGVETIELI-------KDPQNPSRNRGFSFVLYYNNACADYSRQKML 251
+ DEF K++ V +++L +NRGF+FV + ++A A + +
Sbjct: 61 SPDEFDKMVCQAFQDVTSVDLAMPFGSGDTSLGQKQQNRGFAFVKFSSHAAAARAHRMGS 120
Query: 252 NANFKL-DGNTPTISWA-DPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309
++F L D P + WA +P+ P+ A ++ +V N+P + + + +K+LF G+V
Sbjct: 121 KSDFLLGDSWHPVVEWAEEPEIDPEELA---KITIAFVGNLPKDANEDYLKKLFGPFGKV 177
Query: 310 TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQV------LEVVLAKPQTDK 363
KV++ K G+ GF+H+A+RS A+K+ + + G L+V +AKP K
Sbjct: 178 EKVLL--SKKGQSPVGFVHFAKRSDLDNAIKEMNEKTVQGPSRGPAFKLQVAVAKPLDRK 235
Query: 364 K 364
+
Sbjct: 236 R 236
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
F+G LPKDA+E+ L+ L P G V +V L K +S FV F + AI E++
Sbjct: 154 FVGNLPKDANEDYLKKLFGPFGKVEKVLLSKKGQS----PVGFVHFAKRSDLDNAIKEMN 209
Query: 170 SKELKG 175
K ++G
Sbjct: 210 EKTVQG 215
>gi|324501089|gb|ADY40490.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 418
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 104/191 (54%), Gaps = 9/191 (4%)
Query: 176 KTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ--NPSRNRGFS 233
K ++ ++S RLFIGN+PK+ +++E ++ GV + P +NRGF
Sbjct: 9 KNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPDAGESRKNRGFC 68
Query: 234 FVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDN 293
F+ + ++ A +++K+ + + WA+ + PD A +VK LYV+N+ +
Sbjct: 69 FLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMA-KVKVLYVRNLKEA 127
Query: 294 TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353
+ E++KE+F HGEV V +D+ FIH+ ER A+KA++ ++G +E
Sbjct: 128 VTEEQLKEMFSAHGEVDHV------KKIKDYAFIHFNEREPAVKAMEALNGTVLEGVPIE 181
Query: 354 VVLAKPQTDKK 364
+ LAKPQ+DKK
Sbjct: 182 ISLAKPQSDKK 192
>gi|417410478|gb|JAA51712.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 409
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 110/192 (57%), Gaps = 7/192 (3%)
Query: 175 GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
GK + +S NRLF+G++PKN T++ + V G+ + L P + +NRGF F
Sbjct: 10 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCF 69
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNT 294
+ Y ++ A +R+++++ K+ GN T+ WADP PD A +VK L+V+N+
Sbjct: 70 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLFVRNLATTV 128
Query: 295 STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354
+ E +++ F G++ +V +D+ F+H+ +R +A+KA+ + EI+G+ +E+
Sbjct: 129 TEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEI 182
Query: 355 VLAKPQTDKKTE 366
VLAKP K+ E
Sbjct: 183 VLAKPPDKKRKE 194
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 146/303 (48%), Gaps = 30/303 (9%)
Query: 78 VEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR 137
+EE+ PT + E K + +G+ +++G L SE L D+ PIG V +R
Sbjct: 17 IEEQTAPTTTESETPK--------VETSGASLYVGELDPSVSEALLYDIFSPIGSVSSIR 68
Query: 138 LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET--------KNRL 189
+ +D + S G+A+V+F E +KAI++L+ +KGK R S+ +
Sbjct: 69 VCRDAITNTSLGYAYVNFHDHEAGRKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNI 128
Query: 190 FIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249
+I N+ + G + + ++ D S RGF FV + N + A R
Sbjct: 129 YIKNLHPAIDNKSLHETFSTFG-NILSCKVATDDNGVS--RGFGFVHFENESDA---RDA 182
Query: 250 MLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEKIKELFQ 304
+ N ++ ++W K D + +VKA +YVKNI TS E+ ++LF
Sbjct: 183 IEAVNGMLMNDQEVYVAWHVSKK--DRQSKLEEVKAKFTNIYVKNIDLETSQEEFEQLFS 240
Query: 305 RHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363
++G++T V+ GK R FGFI++ + S+A +AV + + + GQ L V A+ + ++
Sbjct: 241 KYGKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDELNESDFRGQTLYVGRAQKKHER 300
Query: 364 KTE 366
+ E
Sbjct: 301 QQE 303
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 126/277 (45%), Gaps = 33/277 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
++I L + L + G++ ++ D ++G S+GF FV F ++ A+ AI+ +
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-DNGVSRGFGFVHFENESDARDAIEAV 186
Query: 169 HSKELKGKTIRCS-----------LSETKNR---LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ + + + + L E K + +++ N+ +++EF ++ G +
Sbjct: 187 NGMLMNDQEVYVAWHVSKKDRQSKLEEVKAKFTNIYVKNIDLETSQEEFEQLFSKYGK-I 245
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L KD + + RGF F+ + +++ A + ++ ++F+ G T + A K
Sbjct: 246 TSAVLEKDSE--GKLRGFGFINFEDHSTAARAVDELNESDFR--GQTLYVGRAQKKHERQ 301
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+ A Q L++KN+ D+ EK+K+ F G +T V VM
Sbjct: 302 QELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEKLKDEFAPFGTITSVKVMKDEAGSS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
R FGF+ ++ A KA+ + + + G+ L V +A+
Sbjct: 362 RGFGFVCFSTPEEATKAITEKNQQLVAGKPLYVAIAQ 398
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L +E L+D P G + V++MKD E+G S+GF FV F + E A KAI
Sbjct: 321 GVNLFIKNLDDSIDDEKLKDEFAPFGTITSVKVMKD-EAGSSRGFGFVCFSTPEEATKAI 379
Query: 166 DELHSKELKGKTIRCSLSETK 186
E + + + GK + ++++ K
Sbjct: 380 TEKNQQLVAGKPLYVAIAQRK 400
>gi|326514108|dbj|BAJ92204.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326525627|dbj|BAJ88860.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 363
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 149/345 (43%), Gaps = 69/345 (20%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S++ + G+P D E L++ G + + +MKD+ SG S+GF +V+F S E AK ++
Sbjct: 3 SKLVVLGIPWDVDTEGLKEYMSKFGSLDDCIVMKDRSSGRSRGFGYVTFSSVEDAKNVVN 62
Query: 167 ELH-----SKELKGKT----IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
H + E+K T +R S ++ R+F+ +P++ E FR+ + G E
Sbjct: 63 SEHILGDRTLEVKIATPKEEMRASGNKKATRIFVARIPQSVDESMFRRHFQSFG---EIT 119
Query: 218 ELIKDPQNPSR-NRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK------ 270
+L + S+ +RG FV + + C D ++ N ++DG T + A PK
Sbjct: 120 DLYMPKELGSKEHRGIGFVTFRSAECVD----NVMQENHEIDGTTVVVDRATPKDEEVRH 175
Query: 271 --------------STPDHSAAASQVKAL----------------------------YVK 288
S + AA++ AL +V
Sbjct: 176 PPRRGGAEREGGYGSYNAYITAATRYAALGVPTLYDHPGPAYGRGYLNEPPVSSKKIFVG 235
Query: 289 NIPDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
+P +T+ + + F R G + +P P KSG R FGF+ +AE A + + + +E
Sbjct: 236 RLPQEANTDDLWDYFGRFGRIVDAYIPKDPKKSGHRGFGFVTFAEDGVADRVARRS--HE 293
Query: 347 IDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGT 391
I GQ + V A P + G + PG + P YG F+G+
Sbjct: 294 ILGQEVAVDSAAPVEGGPSRGGYMEPPGPYGAYGPMMSYGQFSGS 338
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P + ++F+G LP++A+ +DL D G + + + KD + +GF FV+F A
Sbjct: 226 PVSSKKIFVGRLPQEANTDDLWDYFGRFGRIVDAYIPKDPKKSGHRGFGFVTFAEDGVAD 285
Query: 163 KAIDELHSKELKGKTI 178
+ H E+ G+ +
Sbjct: 286 RVARRSH--EILGQEV 299
>gi|307210260|gb|EFN86910.1| APOBEC1 complementation factor [Harpegnathos saltator]
Length = 419
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 112/220 (50%), Gaps = 10/220 (4%)
Query: 126 LCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSE 184
L E +G + E+RLM D SG ++G+AF + A++A L E++ G I S
Sbjct: 3 LLEKVGRLLELRLMLD-FSGSTRGYAFALYEEPRIARRACSVLDGHEIRPGHRIGVVKSM 61
Query: 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
RLF G VPK+ T++EF + + G+ + L + + NRGF FV + ++ A
Sbjct: 62 DNCRLFFGGVPKSKTKEEFLSELTKILDGIIDVYLYPSAHDRTLNRGFIFVEFKDHRAAA 121
Query: 245 YSRQKMLNANFKLDGNTPTISWADPK-STPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
+R+K++ L + + WADP+ P V AL+V+N+ S +K++E+F
Sbjct: 122 MARRKLIPGKVMLWDHEIAVDWADPEPGDPVDEDIMETVTALFVRNLTLEMSQQKVREVF 181
Query: 304 QRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSALKAVKDT 342
RH V P K K + F FIHY R +A +AV D
Sbjct: 182 HRHTNV-----PILKLKKINHFAFIHYENRGAA-QAVMDI 215
>gi|321465036|gb|EFX76040.1| hypothetical protein DAPPUDRAFT_32249 [Daphnia pulex]
Length = 225
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 111/239 (46%), Gaps = 14/239 (5%)
Query: 110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
F G + +D ED+ L E G ++ +RL+ D S S+GF +V+F + E +ID L+
Sbjct: 1 FFGNVLRDVMLEDIIPLFEDCGSIWSLRLVMDPLSTLSRGFGYVNFTTMEAVAVSIDLLN 60
Query: 170 SKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRN 229
LK + N L+IGN+PK+ +D+ + V G+ +
Sbjct: 61 GLILKETGAMQVNANVPNCLYIGNIPKSKDKDDIKTEFSIVSGGILNVI----SAETKLI 116
Query: 230 RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKN 289
GF V Y + A +++Q++ N K+ G+ + WADP H +K L+V
Sbjct: 117 WGFCLVEYDSIQSAAFAKQQLNNGTIKVFGSDIIVDWADPNEAKKHKI----IKVLHVGI 172
Query: 290 IPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348
I +S E+IKELF HG + V D+ F+H R A KAV+D +D
Sbjct: 173 ISKRSSMERIKELFGEHGPIQLV------EKFADYAFVHCENRDDAAKAVEDLNDRTVD 225
>gi|157123628|ref|XP_001660235.1| hypothetical protein AaeL_AAEL009575 [Aedes aegypti]
gi|108874325|gb|EAT38550.1| AAEL009575-PA [Aedes aegypti]
Length = 358
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 131/261 (50%), Gaps = 12/261 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+++ +P + +E DL + E G ++E+RLM D S +++ + FV + ++E AK
Sbjct: 103 PGFGCEIYVKRIPPEFTEADLVPVFERFGKLYEMRLMMDY-SNQNRRYCFVRYTNEEDAK 161
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI+ L+ ++ +T+ S K RLF+GN+PK+ + P + +
Sbjct: 162 VAIEVLNHHFVRDNQTLEAQRSFEKCRLFVGNLPKDLDRKTIEIAFRSLFPEMTRFVMHN 221
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ NRGF+F+ + ++A A ++++ ++ I WA+P+ + DHS +
Sbjct: 222 RISDGEMNRGFAFMDFPDHAAALRAKKQTTPGCMRMWDREIKIVWANPQRSLDHS-GVDE 280
Query: 282 VKALYVKNIPDNTSTEKIKELFQR---HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
VK L+V+NI T ++ LF R ++ K+ + R+F F+ +A+R A
Sbjct: 281 VKMLFVRNIDLKVGTSELYNLFVRLVPRQDIIKI------TRVREFAFVEFAKREQAEMV 334
Query: 339 VKDTEKYEIDGQVLEVVLAKP 359
+ + Y + L++ A P
Sbjct: 335 MHAVQGYVLTQYPLDIEWAMP 355
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 143/302 (47%), Gaps = 28/302 (9%)
Query: 78 VEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR 137
+EE+ PT + E K + +G+ +++G L SE L D+ PIG V +R
Sbjct: 17 IEEQTAPTTTESETPK--------VETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIR 68
Query: 138 LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET--------KNRL 189
+ +D + S G+A+V+F E KAI++L+ +KGK R S+ +
Sbjct: 69 VCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNI 128
Query: 190 FIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249
+I N+ + G + + ++ D S RGF FV + N + A +
Sbjct: 129 YIKNLHPAIDNKSLHETFSTFG-NILSCKVATDENGVS--RGFGFVHFENESDA----RD 181
Query: 250 MLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEKIKELFQR 305
+ A + N + A S D + +VKA +YVKNI TS E+ +ELF +
Sbjct: 182 AIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGK 241
Query: 306 HGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
+G++T V+ GK R FGF+++ + ++A KAV + + E GQ L V A+ + ++
Sbjct: 242 YGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERL 301
Query: 365 TE 366
E
Sbjct: 302 QE 303
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 121/277 (43%), Gaps = 33/277 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
++I L + L + G++ ++ D E+G S+GF FV F ++ A+ AI+ +
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-ENGVSRGFGFVHFENESDARDAIEAV 186
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ + + +L +K +++ N+ + +++EF ++ G +
Sbjct: 187 DGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGK-I 245
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L KD + + RGF FV + ++A A + ++ FK G + A K
Sbjct: 246 TSAVLEKDSE--GKLRGFGFVNFEDHAAAAKAVDELNELEFK--GQKLYVGRAQKKYERL 301
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+ A Q L+VKN+ D+ EK+KE F G +T VM
Sbjct: 302 QELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
R FGF+ ++ A KA+ + + + G+ L V +A+
Sbjct: 362 RGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L++ P G + ++M+D E+G S+GF FV F + E A KAI
Sbjct: 321 GVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEATKAI 379
Query: 166 DELHSKELKGKTIRCSLSETK 186
E + + + GK + ++++ K
Sbjct: 380 TEKNQQIVAGKPLYVAIAQRK 400
>gi|157108822|ref|XP_001650402.1| hypothetical protein AaeL_AAEL015050 [Aedes aegypti]
gi|108868501|gb|EAT32726.1| AAEL015050-PA [Aedes aegypti]
Length = 396
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 131/261 (50%), Gaps = 12/261 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+++ +P + +E DL + E G ++E+RLM D S +++ + FV + ++E AK
Sbjct: 103 PGFGCEIYVKRIPPEFTEADLVPVFERFGKLYEMRLMMDY-SNQNRRYCFVRYTNEEDAK 161
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI+ L+ ++ +T+ S K RLF+GN+PK+ + P + +
Sbjct: 162 VAIEVLNHHFVRDNQTLEAQRSFEKCRLFVGNLPKDLDRKTIEIAFRSLFPEMTRFVMHN 221
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ NRGF+F+ + ++A A ++++ ++ I WA+P+ + DHS +
Sbjct: 222 RISDGEMNRGFAFMDFPDHAAALRAKKQTTPGCMRMWDREIKIVWANPQRSLDHS-GVDE 280
Query: 282 VKALYVKNIPDNTSTEKIKELFQR---HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKA 338
VK L+V+NI T ++ LF R ++ K+ + R+F F+ +A+R A
Sbjct: 281 VKMLFVRNIDLKVGTSELYNLFVRLVPRQDIIKI------TRVREFAFVEFAKREQAEMV 334
Query: 339 VKDTEKYEIDGQVLEVVLAKP 359
+ + Y + L++ A P
Sbjct: 335 MHAVQGYVLTQYPLDIEWAMP 355
>gi|424513446|emb|CCO66068.1| RNA recognition motif family protein, expressed [Bathycoccus
prasinos]
Length = 557
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 115/436 (26%), Positives = 187/436 (42%), Gaps = 87/436 (19%)
Query: 85 TASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDL--------------C--E 128
+ S GE++ A L P +GSE+F+GG+PK AS++D+ +L C +
Sbjct: 72 SMSSGEEDALMSASL-GHPQHGSELFLGGVPKSASDQDVENLFKGSTKGRGKGNTKCPSQ 130
Query: 129 PIGDVFEVRLMKD-KESGESKGFAFVSFRSKEFAKKAIDELHSKELKG------------ 175
P+ +++++KD +S ++G+AF F ++ + A L +
Sbjct: 131 PV----DIQVVKDPNDSMRNRGYAFARFGNRGECEDAFQFLSENDGANAVMIDAENNNEE 186
Query: 176 KTIRCSLSETKNRLFIGNVPKNWT-EDEFRKVIEDVGPGVETIELIKDPQN-----PSRN 229
K IR ++ TK+ LF+ P T ED +++ G G+ET+ L + R+
Sbjct: 187 KKIRATIKPTKHVLFMSGFPPFATREDIVTELLRVGGAGIETVSLPRASGTGTNGIACRH 246
Query: 230 RGFSFVLYYNNACADYSRQKMLNAN------FKLDGNTPTIS-WAD--PKSTPDHSAAAS 280
+G+ F+ Y+N CA+ + M N N F + N P ++ WAD + P +
Sbjct: 247 KGYGFIDYFNQECAE---RAMKNINDKTTRMFNGNANKPVVAKWADVSKEKPPSKEDLLA 303
Query: 281 QVKALYVKNIP------DNTSTE-KIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERS 333
Q K++YV IP D E K++E+F + GEV V +P G + K + F+H+ ERS
Sbjct: 304 QSKSVYVGQIPTEGVALDEKDLEGKLREVFGQFGEVESVKLPRGDATK-GYAFVHFTERS 362
Query: 334 --------------------SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSP 373
SA+ V ++ G L V +A+P+ ++ E P
Sbjct: 363 SAEKAVEAAAASASGARGDESAMDGVVAAGAVQLQGCNLTVEIARPERERNNEHRDKGGP 422
Query: 374 GLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGP--MPSGMHMVPMVLPDG 431
GG P G + + P G P G M P+ LP+G
Sbjct: 423 RGGRGGRRPMHRGGRGEPPGSRRGGDYN---NYMSPHGGGIAPRQFGGGNSMTPVYLPNG 479
Query: 432 QIGYVLQQPGVQMPPP 447
Q YV+ Q MP P
Sbjct: 480 QTAYVMGQG--NMPAP 493
>gi|242083906|ref|XP_002442378.1| hypothetical protein SORBIDRAFT_08g019135 [Sorghum bicolor]
gi|241943071|gb|EES16216.1| hypothetical protein SORBIDRAFT_08g019135 [Sorghum bicolor]
Length = 213
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 12/158 (7%)
Query: 89 GEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESK 148
G DE+D G+EVF+GGLP+ A+E LR++ G++ +VR+MKD ++G SK
Sbjct: 63 GYDEQDPRT------ARGTEVFVGGLPRSATESMLREIFSSCGEIIDVRIMKD-QNGHSK 115
Query: 149 GFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIE 208
G+ FV F +E+A A + + EL+GK + LS ++ +F GN+ K WT +EF ++I
Sbjct: 116 GYGFVRFSKREYANTAKRQKNGIELQGKRLDVDLSMDQDTVFFGNLCKEWTSEEFEELIH 175
Query: 209 DVGPGVETIELIKDPQNPSR-----NRGFSFVLYYNNA 241
V +++L S NRGF+FV + ++A
Sbjct: 176 KTFKDVVSVDLAMASNRGSSNKRNINRGFAFVRFTSHA 213
>gi|74194008|dbj|BAE36923.1| unnamed protein product [Mus musculus]
Length = 368
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 96/166 (57%), Gaps = 11/166 (6%)
Query: 201 DEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN 260
+EF KV E G+ + L P + +NRGF F+ Y ++ A +R+++++ K+ GN
Sbjct: 6 EEFSKVTE----GLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGN 61
Query: 261 TPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
T+ WADP PD A +VK L+V+N+ + + E +++ F + G++ +V
Sbjct: 62 VGTVEWADPIEDPDPEVMA-KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KK 114
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+D+ FIH+ ER A+KA+++ +++G+ +E+V AKP K+ E
Sbjct: 115 LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKE 160
>gi|357614246|gb|EHJ68984.1| hypothetical protein KGM_20249 [Danaus plexippus]
Length = 260
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 87/152 (57%), Gaps = 7/152 (4%)
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
G+ + + P + +NRGF F+ Y ++ A +++++ K+ G + WADP+
Sbjct: 13 GLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEE 72
Query: 273 PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAER 332
PD S+VK LYV+N+ + E +KE F+R+G V +V +D+ F+H+ +R
Sbjct: 73 PDEQTM-SKVKVLYVRNLTQEITEEALKEEFERYGNVERV------KKIKDYAFVHFEDR 125
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
A+KA+++ + E+ G LEV LAKP +DKK
Sbjct: 126 DCAVKAMQEIDGKELGGARLEVSLAKPPSDKK 157
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ L ++ +EE L++ E G+V V+ +KD +AFV F ++ A KA+ E+
Sbjct: 84 LYVRNLTQEITEEALKEEFERYGNVERVKKIKD--------YAFVHFEDRDCAVKAMQEI 135
Query: 169 HSKELKGKTIRCSLSE 184
KEL G + SL++
Sbjct: 136 DGKELGGARLEVSLAK 151
>gi|388514909|gb|AFK45516.1| unknown [Lotus japonicus]
Length = 150
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 93/152 (61%), Gaps = 7/152 (4%)
Query: 336 LKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTF-PYSPGLVPTHLPHAGYGGFAGTPYG 394
+KA+K+TEKYEIDG+ LE LAKPQ D+++ GT P ++PT+ GYG G
Sbjct: 1 MKALKNTEKYEIDGKNLECSLAKPQADQRSSGTSNSQKPVVLPTYPHRLGYGMVGGA--Y 58
Query: 395 SVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMPPPR---PRR 451
AAGF QP++YG G P+GM M+PM+LPDG+IGYV+QQPG+Q P + P
Sbjct: 59 GGIGAGYGAAGFAQPLMYGMGANPAGMPMMPMLLPDGRIGYVVQQPGLQQPSLQQHAPSP 118
Query: 452 VDRSNGPGGRGGRGGSSGGDDGNRG-RRYRPY 482
V R G G G G+D NRG RRY PY
Sbjct: 119 VSRHGRRSGGGSSSGGKRGNDNNRGHRRYNPY 150
>gi|357133920|ref|XP_003568569.1| PREDICTED: RNA-binding protein Musashi homolog 2-like [Brachypodium
distachyon]
Length = 366
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 148/347 (42%), Gaps = 71/347 (20%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S++ + G+P D E LR+ G + + +MKD+ SG S+GF +V+F S+E AK ++
Sbjct: 3 SKLVVLGIPWDVDTEGLREYMSKFGPLDDCIVMKDRSSGRSRGFGYVTFSSEEDAKNVVN 62
Query: 167 ELH-----SKELKGKT----IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
H + E+K T +R S ++ R+F+ +P++ E FR+ + G E I
Sbjct: 63 CEHILGDRTLEVKIATPKEEMRASGNKKATRIFVARIPQSVDESMFRRHFQSFG---EII 119
Query: 218 ELIKDPQNPSR-NRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK------ 270
+L + S+ +RG FV + + C D ++ +LDG T + A PK
Sbjct: 120 DLYMPKELGSKDHRGIGFVTFRSAECVD----DVMKETHELDGTTVVVDRATPKDEDVRH 175
Query: 271 -----STPDHS-----------AAASQVKAL----------------------------Y 286
P H AA++ AL +
Sbjct: 176 PPRSRRAPVHGDGGYGSYNAYITAATRYAALGVPTLYDHPGQAYGRGYSNEPLVTGKKIF 235
Query: 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEK 344
V +P +T+ + + F R G + +P P +SG R FGF+ +A+ A + +
Sbjct: 236 VGRLPQEANTDDLWDYFGRFGRIVDAYIPKDPKRSGHRGFGFVTFADDGVADRVAR--RS 293
Query: 345 YEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGT 391
+EI GQ + V A P + + S G + P YG F+G+
Sbjct: 294 HEILGQEVAVDSAAPLEGGSSGSGYMESAGPYGAYGPMLSYGHFSGS 340
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 106/255 (41%), Gaps = 29/255 (11%)
Query: 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
++L + +P + + R+ + GP + I ++KD ++ R+RGF +V + + A
Sbjct: 3 SKLVVLGIPWDVDTEGLREYMSKFGPLDDCI-VMKD-RSSGRSRGFGYVTFSSEEDA--- 57
Query: 247 RQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
+ ++N L T + A PK S + ++V IP + + FQ
Sbjct: 58 -KNVVNCEHILGDRTLEVKIATPKEEMRASGNKKATR-IFVARIPQSVDESMFRRHFQSF 115
Query: 307 GEVTKVVMPP--GKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
GE+ + MP G R GF+ + +K+T +E+DG + V A P K
Sbjct: 116 GEIIDLYMPKELGSKDHRGIGFVTFRSAECVDDVMKET--HELDGTTVVVDRATP---KD 170
Query: 365 TEGTFPYSPGLVPTHLPHAGYGGF-----AGTPYGSVGTGFGVAAGFQQP-MIYGRG--- 415
+ P P H GYG + A T Y ++ GV + P YGRG
Sbjct: 171 EDVRHPPRSRRAPVH-GDGGYGSYNAYITAATRYAAL----GVPTLYDHPGQAYGRGYSN 225
Query: 416 -PMPSGMHMVPMVLP 429
P+ +G + LP
Sbjct: 226 EPLVTGKKIFVGRLP 240
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++F+G LP++A+ +DL D G + + + KD + +GF FV+F A +
Sbjct: 230 TGKKIFVGRLPQEANTDDLWDYFGRFGRIVDAYIPKDPKRSGHRGFGFVTFADDGVADRV 289
Query: 165 IDELHSKELKGKTI 178
H E+ G+ +
Sbjct: 290 ARRSH--EILGQEV 301
>gi|308802151|ref|XP_003078389.1| Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) (ISS)
[Ostreococcus tauri]
gi|116056841|emb|CAL53130.1| Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) (ISS),
partial [Ostreococcus tauri]
Length = 430
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 146/304 (48%), Gaps = 27/304 (8%)
Query: 59 ASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLA-LPPNGSEVFIGGLPKD 117
A + QS + + + D +E+ + + ED D +L+A EVFIG + +
Sbjct: 105 ARARAQSGDPSSSTVDRERYDEKREISVFAAEDAAD---ELIAGRARRDGEVFIGSISLE 161
Query: 118 ASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK--E 172
A+E+ +R + G +M D+ +G+ +G+AF + E A KAI+ + S E
Sbjct: 162 ATEDAVRRALKACGAETGAVGFEMMTDRATGKHRGYAFARYGDPESAAKAIETIESARVE 221
Query: 173 LKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK------DPQNP 226
+ G+ IR S+ K R+F+G + K+ T E + + G G+E EL + +
Sbjct: 222 IGGQKIRASVKPNKTRVFVGGIRKDATRAECVEALRARGAGLEFFELARPKKKKEGVEQT 281
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKL------DGNTPTISWADPKSTPDHSAAAS 280
N G + YYN ACA+ + M A KL D T SWA K++ +A
Sbjct: 282 DENGGHGWATYYNEACAERFMKNMREAEDKLPIANESDTRGMTTSWATVKAS---AAKVQ 338
Query: 281 QVKALYVKNIPDNTSTEK-IKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
++ L+V+++ +TE+ ++E F R G++ V + + + F ++ +A + A KA+
Sbjct: 339 GIRTLHVRDLNSTNATEEAMRECFGRFGDIEDVQLRTDR--EPHFAWVTFANPNDAEKAL 396
Query: 340 KDTE 343
+ E
Sbjct: 397 GECE 400
>gi|444728034|gb|ELW68498.1| Heterogeneous nuclear ribonucleoprotein R [Tupaia chinensis]
Length = 160
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 87/148 (58%), Gaps = 1/148 (0%)
Query: 139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKN 197
M D SG+++G+AF++F KE A++A+ S E++ GK + +S NRLF+G++PKN
Sbjct: 1 MMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKN 60
Query: 198 WTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL 257
T++ + V G+ + L P + +NRGF F+ Y ++ A +R+++++ K+
Sbjct: 61 KTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKV 120
Query: 258 DGNTPTISWADPKSTPDHSAAASQVKAL 285
GN T+ WADP PD A +++L
Sbjct: 121 WGNVVTVEWADPVEEPDPEVMAKFLQSL 148
>gi|426231613|ref|XP_004009833.1| PREDICTED: RNA-binding protein 47 [Ovis aries]
Length = 546
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 116/256 (45%), Gaps = 54/256 (21%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVG---------------------------------- 95
Query: 166 DELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L G + C + RLFIG +PK +E + I V GV + + +
Sbjct: 96 -------LLG--VGCGVDTC--RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAAD 144
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
+NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK L
Sbjct: 145 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKIL 203
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A+ A+ +
Sbjct: 204 YVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVHAMNNLN 257
Query: 344 KYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 258 GTELEGSCLEVTLAKP 273
>gi|357122936|ref|XP_003563169.1| PREDICTED: uncharacterized protein LOC100842213 [Brachypodium
distachyon]
Length = 691
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 134/267 (50%), Gaps = 13/267 (4%)
Query: 78 VEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR 137
V EE A GEDE + + EVF+ GLP +A EE++ G+V EVR
Sbjct: 87 VVEEAGMMAEAGEDEGRRKKR------KEYEVFVFGLPPEAVEENVAGALAEAGEVEEVR 140
Query: 138 LMKD-KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPK 196
L++D E +KGFAFV F A+ A D+L + ++KGK + L + N+
Sbjct: 141 LVRDPAEPQLNKGFAFVRFAEVWQARWAADDLRTAKIKGKACGICKNNDNETLHLRNICF 200
Query: 197 NWTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANF 255
+W++D+ + ++ +E I LI+ P +NRG++F+ + ++ A K+ +
Sbjct: 201 DWSKDDLAENLKTFELENLEDINLIEHPDRKGKNRGYAFLDFSSHVDAVAGFLKLQKRDL 260
Query: 256 KLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVM 314
L + IS+++ S D +VK++++ +P + + ++E F + GE+ + +
Sbjct: 261 YLGTDIKAQISFSNTISQDD--KVMEKVKSVFLDGLPPHWDEDDVREKFGKFGEIDNIQL 318
Query: 315 PPG--KSGKRDFGFIHYAERSSALKAV 339
+ ++DFGFI + R +A+ +
Sbjct: 319 ARNMFTAKRKDFGFISFTTRQAAIDCI 345
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
VF+ GLP E+D+R+ G++ ++L ++ + + K F F+SF +++ A ID
Sbjct: 289 VFLDGLPPHWDEDDVREKFGKFGEIDNIQLARNMFTAKRKDFGFISFTTRQAAIDCID 346
>gi|197260810|gb|ACH56905.1| heterogeneous nuclear ribonucleoprotein r [Simulium vittatum]
Length = 252
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 80/136 (58%), Gaps = 7/136 (5%)
Query: 229 NRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVK 288
NRGF F+ Y ++ A +++++ K+ G + WADP+ PD S+VK LYV+
Sbjct: 2 NRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDE-GTMSKVKVLYVR 60
Query: 289 NIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348
N+ + S EK+KE F+ +G V +V +D+ F+HY +R + + A++D + +I
Sbjct: 61 NLTHDISEEKLKEHFENYGRVERV------KKIKDYAFVHYEDRDNTVLAMRDLDGKDIG 114
Query: 349 GQVLEVVLAKPQTDKK 364
G +EV LAKP +DKK
Sbjct: 115 GSCIEVSLAKPPSDKK 130
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 134/308 (43%), Gaps = 37/308 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L KD + + D G++ ++ D E+G SKG+AFV F ++E A +AI+++
Sbjct: 109 IFIKNLEKDIDNKAIYDTFSAFGNILSCKIALD-ENGNSKGYAFVHFETQEAANRAIEKV 167
Query: 169 HSKELKGKTIRC--------------SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK + +L+ L++ N + ++DEFR + E G V
Sbjct: 168 NGMLLSGKKVFVGHFMSRKERMEKIGNLAAKYTNLYVKNFRDDISDDEFRDLFEQCGKIV 227
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ + D ++RGF FV Y + A + + + F L ++ A KS +
Sbjct: 228 SCVVMRDDS---GKSRGFGFVSYETHEAAQKAVETLNEKEFDL--RRMYVARAQKKS--E 280
Query: 275 HSAAAS--------------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKS 319
SA Q LYVKN+ D K+++ F G +T VM K
Sbjct: 281 RSALLRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDDAKLRQEFANFGTITSAKVMSDEKG 340
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTH 379
R FGF+ ++ A KAV + I + L V LA+ + D+K + Y +
Sbjct: 341 ISRGFGFVCFSSPEEATKAVTEMNGRIIISKPLYVALAQRKEDRKAQLAAQYVQRMSTLR 400
Query: 380 LPHAGYGG 387
+P G G
Sbjct: 401 IPQPGQPG 408
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 128/263 (48%), Gaps = 10/263 (3%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++G L D +E L + G + +R+ +D + S G+A+V+F+ A++A+D L
Sbjct: 21 LYVGDLAPDVNEAQLYEKFNSTGPISSIRVCRDAITRRSLGYAYVNFQQPNDAERALDTL 80
Query: 169 HSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ + GK R S+ + R +GN+ KN +D K I D I K
Sbjct: 81 NFDPVNGKPCRIMWSQRDPSLRRSGVGNIFIKNLEKDIDNKAIYDTFSAFGNILSCKIAL 140
Query: 225 NPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS--WADPKSTPDHSAAASQ 281
+ + N +G++FV + A+ + +K+ L G + + + A++
Sbjct: 141 DENGNSKGYAFVHFETQEAANRAIEKV--NGMLLSGKKVFVGHFMSRKERMEKIGNLAAK 198
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
LYVKN D+ S ++ ++LF++ G++ V+ SGK R FGF+ Y +A KAV+
Sbjct: 199 YTNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVE 258
Query: 341 DTEKYEIDGQVLEVVLAKPQTDK 363
+ E D + + V A+ ++++
Sbjct: 259 TLNEKEFDLRRMYVARAQKKSER 281
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 81/169 (47%), Gaps = 28/169 (16%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K++ ++ L + +++ D S+++ RDL E G + +M+D +SG+S+GF F
Sbjct: 186 KERMEKIGNLAAKYTNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRD-DSGKSRGFGF 244
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------R 188
VS+ + E A+KA++ L+ KE + + + ++ K+
Sbjct: 245 VSYETHEAAQKAVETLNEKEFDLRRMYVARAQKKSERSALLRRQYEQKKQEMMKRFQGVN 304
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ + + R+ + G + + +++ D + S RGF FV +
Sbjct: 305 LYVKNLDDVIDDAKLRQEFANFGT-ITSAKVMSDEKGIS--RGFGFVCF 350
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L + LR G + ++M D E G S+GF FV F S E A KA+
Sbjct: 302 GVNLYVKNLDDVIDDAKLRQEFANFGTITSAKVMSD-EKGISRGFGFVCFSSPEEATKAV 360
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 361 TEMNGRIIISKPLYVALAQRK 381
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 128/269 (47%), Gaps = 14/269 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L S+ L+ IG V R+ +D + +S G+ +V+F + A++A++
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALE 72
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L+ + L G+ IR S+ K +FI N+ K+ + E G + + +
Sbjct: 73 VLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFG-RILSCK 131
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
++ D S+ G+ FV + CA+ + +K+ N + + PK+ A
Sbjct: 132 IVMDENGQSK--GYGFVHFEKEECAERAIEKI--NNMIIRDRVVYVGKFIPKTERKSQAR 187
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGKRDFGFIHYAERSSALK 337
+ LYVKN P T EK+KE+F GE+ + VM + + FGF+ Y + A
Sbjct: 188 KVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAEN 247
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV+ EI+G+VL A+ + +++ E
Sbjct: 248 AVRTMHGKEIEGRVLYCARAQRKEERQEE 276
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 137/284 (48%), Gaps = 32/284 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K +++L D G + +++ D E+G+SKG+ FV F +E A++AI+++
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD-ENGQSKGYGFVHFEKEECAERAIEKI 161
Query: 169 HSKELKGKTI-----------RCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
++ ++ + + + + K N L++ N P ++ +++ + G +++
Sbjct: 162 NNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYVKNFPPETDNEKLKEMFSEFGE-IKS 220
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA--------D 268
++KD N +++GF FV Y + A+ + + M +++G + A +
Sbjct: 221 ACVMKD--NEGKSKGFGFVCYLDPDHAENAVRTMHGK--EIEGRVLYCARAQRKEERQEE 276
Query: 269 PKSTPDHSAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKR 322
K + A Q LYVKN+ DN ++++E F HG +T VM + +
Sbjct: 277 LKQKIEKQRAERQSNYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSK 336
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
FGF+ +A A +AV D I + L V LA+ + D++ +
Sbjct: 337 GFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAK 380
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 79/367 (21%), Positives = 139/367 (37%), Gaps = 78/367 (21%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++ P + E L+++ G++ +MKD E G+SKGF FV + + A+ A+ +
Sbjct: 194 LYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNE-GKSKGFGFVCYLDPDHAENAVRTM 252
Query: 169 HSKELKGKTIRCSLSETKN-------------------------RLFIGNVPKNWTEDEF 203
H KE++G+ + C+ ++ K L++ N+ N +
Sbjct: 253 HGKEIEGRVLYCARAQRKEERQEELKQKIEKQRAERQSNYMLNVNLYVKNLDDNIDDKRL 312
Query: 204 RKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263
+ G + + +++KD N R++GF FV + N + + + + + N + G+ P
Sbjct: 313 EEAFSVHG-SITSAKVMKDANN--RSKGFGFVCFAN---PEQAARAVTDMNGTIIGSKPL 366
Query: 264 -ISWAD------PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPP 316
++ A K +H +Q +A IP F PP
Sbjct: 367 YVALAQRKEDRRAKLIEEHQQRLAQYRAPVASMIPAVPGHAAPHNYF-----------PP 415
Query: 317 GKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLV 376
+R F H SSA V+ ++P+ ++ P G +
Sbjct: 416 AFQAQR---FYH---PSSA------------------VLSSQPRWNRA--AGIPAQIGAI 449
Query: 377 PTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYV 436
P P AGY A P A + P + R MP+GM +P P Q V
Sbjct: 450 PNRPPVAGYYPGAPNPAAITANQMAAFAQLRTPGV-NRPMMPNGMSSMPTT-PHLQTAAV 507
Query: 437 LQQPGVQ 443
Q Q
Sbjct: 508 FNQAANQ 514
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 135/267 (50%), Gaps = 14/267 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +E DL ++ PIG V +R+ +D S +S G+A+V+F+S +KA++
Sbjct: 47 ASLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADGEKALE 106
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
EL+ +KGK R S+ + R GN+ KN K + D I K
Sbjct: 107 ELNYTPIKGKACRIMWSQRDPSLRRNGSGNIFIKNLHPAIDNKTLHDTFSAFGKILSCKI 166
Query: 223 PQNPSRN-RGFSFVLYYNNACADYSRQK----MLNANFKLDGNTPTISWADPKSTPDHSA 277
+ + N +GF FV Y + A + + +LN + G P ++ D +S
Sbjct: 167 ATDENGNSKGFGFVHYEESESAKAAIENVNGMLLNDHEVYVG--PHLAKKDRQSKMRELI 224
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
A +YVKNI N +K++E F G ++ + + +SGK R FGF+++ + A+
Sbjct: 225 A--NFTNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKDESGKSRGFGFVNFEKHEDAV 282
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDK 363
KAV++ +IDGQ L V A+ ++++
Sbjct: 283 KAVEELNNKDIDGQKLYVGRAQKKSER 309
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 155/360 (43%), Gaps = 53/360 (14%)
Query: 101 ALPPNGS-EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
+L NGS +FI L + L D G + ++ D E+G SKGF FV + E
Sbjct: 128 SLRRNGSGNIFIKNLHPAIDNKTLHDTFSAFGKILSCKIATD-ENGNSKGFGFVHYEESE 186
Query: 160 FAKKAIDELH---------------SKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFR 204
AK AI+ ++ +K+ + +R ++ N +++ N+ NW ED+ R
Sbjct: 187 SAKAAIENVNGMLLNDHEVYVGPHLAKKDRQSKMRELIANFTN-VYVKNINLNWDEDKLR 245
Query: 205 KVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264
+ G + +I L KD ++RGF FV + + A + +++ N + +DG +
Sbjct: 246 ETFSPFGT-ISSIFLSKD--ESGKSRGFGFVNFEKHEDAVKAVEELNNKD--IDGQKLYV 300
Query: 265 SWADPKS----TPDHSAAAS--------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV 312
A KS + H A+ Q L+VKN+ D+ K++E F+ +G +T
Sbjct: 301 GRAQKKSERMESLKHQYEAARQEQLNKYQGYNLFVKNLDDSIDDAKLEEEFKPYGTITSA 360
Query: 313 VMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ +GK + FGF+ Y+ A KA+ + + + G+ L V LA+ + ++++ +
Sbjct: 361 KVMLDDAGKSKGFGFVCYSSPEEATKAITEMHQRMVAGKPLYVALAQRKEVRRSQLSQQI 420
Query: 372 SPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGP--MPSGMHMVPMVLP 429
A GG F PM YG+ P +P G P P
Sbjct: 421 QARNQMRMQQAAAQGGM---------------GQFVAPMFYGQNPGFLPPGARGAPFAAP 465
>gi|357507979|ref|XP_003624278.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499293|gb|AES80496.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 822
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 129/239 (53%), Gaps = 9/239 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL K+A+E DLR + +G++ EVR+ + ++ +KGFA + F + E K+A+ E
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 168 LHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQ 224
L + + GK I + + + L++ N+ K+W ++ ++ ++ G + + L++D
Sbjct: 255 LKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDN 314
Query: 225 NPSRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
N N G +F+ + ++++ Y R + + F +D +S+A+ A QV
Sbjct: 315 NEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVD-KPAEVSFANSFIDLGDDIMA-QV 372
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR--DFGFIHYAERSSALKAV 339
K +++ +P + + ++ L +++G V KV + G R ++GF+ + ++A++
Sbjct: 373 KTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVECA 431
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 130/269 (48%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L D +E L ++ PIG++ +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S L +GN+ KN K + D +I K
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST----PDHSAA 278
N +RGF FV + + A QK +N + N + KS + A
Sbjct: 131 VYNEHGSRGFGFVHFETHEAA----QKAINTMNGMLLNDRKVFVGHFKSRQKREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A +YVKN+ N +++++LF + G + V VM R FGF+++ + A K
Sbjct: 187 ALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ GQ+L V A+ + ++++E
Sbjct: 247 AVDHMNGKEVSGQLLYVGRAQKRAERQSE 275
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 126/289 (43%), Gaps = 33/289 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + +++ ++ S+GF FV F + E A+KAI+ +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 158
Query: 169 HSKELKGKTIRCSLSETKNR--------------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ + +++ N+ N E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFG-NM 217
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--T 272
+++++++D SR GF FV + + A + M ++ G + A ++
Sbjct: 218 QSVKVMRDSNGQSR--GFGFVNFEKHEEAQKAVDHMNGK--EVSGQLLYVGRAQKRAERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR 322
+ Q+K LYVKN+ D+ + E++KE+F +G +T + S +
Sbjct: 274 SELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTESSHSK 333
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ + + A+L A + +++ L + E+ L+DL G++ V++M+D +G+S+G
Sbjct: 174 KSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL--------SETKNR------------- 188
F FV+F E A+KA+D ++ KE+ G+ + SE K R
Sbjct: 233 FGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQ 292
Query: 189 ---LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ + ++ ++V G I K S ++GF FV +
Sbjct: 293 GVNLYVKNLDDSINDERLKEVFSTYG----VITSAKVMTESSHSKGFGFVCF 340
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++E L+++ G + ++M ES SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGTKPLYVALAQRK 371
>gi|326501766|dbj|BAK02672.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 682
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 157/350 (44%), Gaps = 37/350 (10%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE-SKGFAFVSFRSKEFAKKAID 166
EVF+ GLP++A E+D+ G+V EVRL++D + +KGFAF F A+ A +
Sbjct: 103 EVFVFGLPREAMEDDVAAALTEAGEVEEVRLVRDPAQPQLNKGFAFARFAEVWQARWAAN 162
Query: 167 ELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQN 225
+L + +KGK + L + N+ +W++++ + ++ +E I LI+ P
Sbjct: 163 DLRTAMIKGKACGICKNNDNETLHLRNICFDWSKEDLAEKLKTFELENLEDINLIEHPDR 222
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-PTISWADPKSTPDHSAAASQVKA 284
RNRG++F+ + ++ A K+ + L + IS+++ S D +VK+
Sbjct: 223 KGRNRGYAFLDFSSHVDAVAGFLKLQKRDLFLGTDVRAQISFSNTISQDD--KVMEKVKS 280
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG--KSGKRDFGFIHYAERSSALKAVKDT 342
+++ +P + + ++E F + GE+ + + + ++DFGFI + R +AL +
Sbjct: 281 VFLDGLPPHWDEDDVREKFGKFGEIDNIQLARNMFTAKRKDFGFISFTTRQAALGCIDMV 340
Query: 343 EKYEI---DGQV-LEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGT 398
K G++ ++ L +P+ TF TH+ G G +G
Sbjct: 341 NKGRFGEGSGKIRMKATLQRPKP------TFKKPSWQGDTHM--------LGVRRGFIGK 386
Query: 399 GFGVAAGFQQPMIYGRGPMPSGM-HMVPMVLPDGQIGYVLQQPGVQMPPP 447
+G R P P+ H+ P P QP V PP
Sbjct: 387 SYG-----------DREPHPNRFRHLGPERRPYSNHSNYRHQPMVGRLPP 425
>gi|124359488|gb|ABN05926.1| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 824
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 129/239 (53%), Gaps = 9/239 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL K+A+E DLR + +G++ EVR+ + ++ +KGFA + F + E K+A+ E
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 168 LHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQ 224
L + + GK I + + + L++ N+ K+W ++ ++ ++ G + + L++D
Sbjct: 255 LKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDN 314
Query: 225 NPSRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
N N G +F+ + ++++ Y R + + F +D +S+A+ A QV
Sbjct: 315 NEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVD-KPAEVSFANSFIDLGDDIMA-QV 372
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR--DFGFIHYAERSSALKAV 339
K +++ +P + + ++ L +++G V KV + G R ++GF+ + ++A++
Sbjct: 373 KTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVECA 431
>gi|324506631|gb|ADY42829.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 341
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 94/174 (54%), Gaps = 9/174 (5%)
Query: 193 NVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS--RNRGFSFVLYYNNACADYSRQKM 250
N+PK+ +++E ++ GV + P + +NRGF F+ + ++ A +++K+
Sbjct: 7 NIPKSKSKEEILAEFKEHTEGVVDCIIYTSPDAGANRKNRGFCFLDFCDHKAASDAKRKI 66
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
+ + + WA+ + PD S+VK LYV+N+ + + E++KE+F HGEV
Sbjct: 67 HAGKLRPWNSDLVVDWAEQQEEPDEETM-SKVKVLYVRNLKEAVTEEQLKEMFAAHGEVE 125
Query: 311 KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
+ RD+ FIH+ ER ALKA++ ++G +E+ LAKPQ DKK
Sbjct: 126 RA------KKIRDYAFIHFKEREPALKAMEALNGTVLEGIAIEISLAKPQGDKK 173
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 130/269 (48%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L D +E L ++ PIG++ +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S L +GN+ KN K + D +I K
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST----PDHSAA 278
N +RGF FV + + A QK +N + N + KS + A
Sbjct: 131 VYNEHGSRGFGFVHFETHEAA----QKAINTMNGMLLNDRKVFVGHFKSRQKREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A +YVKN+ N +++++LF + G + V VM R FGF+++ + A K
Sbjct: 187 ALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ GQ+L V A+ + ++++E
Sbjct: 247 AVDHMNGKEVSGQLLYVGRAQKRAERQSE 275
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 127/289 (43%), Gaps = 33/289 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + +++ ++ S+GF FV F + E A+KAI+ +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 158
Query: 169 HSKELKGKTIRCSLSETKNR--------------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ + +++ N+ N E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFG-NM 217
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--T 272
+++++++D SR GF FV + + A + M N ++ G + A ++
Sbjct: 218 QSVKVMRDSNGQSR--GFGFVNFEKHEEAQKAVDHM-NGK-EVSGQLLYVGRAQKRAERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR 322
+ Q+K LYVKN+ D+ + E++KE+F +G +T + S +
Sbjct: 274 SELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTESSHSK 333
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ + + A+L A + +++ L + E+ L+DL G++ V++M+D +G+S+G
Sbjct: 174 KSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRC--------SLSETKNR------------- 188
F FV+F E A+KA+D ++ KE+ G+ + SE K R
Sbjct: 233 FGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQ 292
Query: 189 ---LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ + ++ ++V G I K S ++GF FV +
Sbjct: 293 GVNLYVKNLDDSINDERLKEVFSTYG----VITSAKVMTESSHSKGFGFVCF 340
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++E L+++ G + ++M ES SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGTKPLYVALAQRK 371
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 134/268 (50%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F A++A+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEV--TKVVM-PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ E++KELF ++G+ KV+M P GKS R FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKS--RGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V+D E++G+ + V A+ + +++ E
Sbjct: 248 VEDMNGTELNGKTVFVGRAQKKNERQAE 275
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 146/331 (44%), Gaps = 47/331 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ + G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+++++ DP SR GF FV Y + A+ + + M +L+G T + A K+
Sbjct: 219 -SVKVMMDPTGKSR--GFGFVSYEKHEDANKAVEDMNGT--ELNGKTVFVGRAQKKNERQ 273
Query: 272 ---------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAGFQQPMI 411
G P ++ F +G+ P +
Sbjct: 387 -----AGMRAMPANTIINQFQPTSGYFMPAV 412
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEEGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 130/269 (48%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L D +E L ++ PIG++ +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S L +GN+ KN K + D +I K
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST----PDHSAA 278
N +RGF FV + + A QK +N + N + KS + A
Sbjct: 131 VYNEHGSRGFGFVHFETHEAA----QKAINTMNGMLLNDRKVFVGHFKSRQKREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A +YVKN+ N +++++LF + G + V VM R FGF+++ + A K
Sbjct: 187 ALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ GQ+L V A+ + ++++E
Sbjct: 247 AVDHMNGKEVSGQLLYVGRAQKRAERQSE 275
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 127/289 (43%), Gaps = 33/289 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + +++ ++ S+GF FV F + E A+KAI+ +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 158
Query: 169 HSKELKGKTIRCSLSETKNR--------------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ + +++ N+ N E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFG-NM 217
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--T 272
+++++++D SR GF FV + + A + M N ++ G + A ++
Sbjct: 218 QSVKVMRDSNGQSR--GFGFVNFEKHEEAQKAVDHM-NGK-EVSGQLLYVGRAQKRAERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR 322
+ Q+K LYVKN+ D+ + E++KE+F +G +T + S +
Sbjct: 274 SELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTESSHSK 333
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ + + A+L A + +++ L + E+ L+DL G++ V++M+D +G+S+G
Sbjct: 174 KSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL--------SETKNR------------- 188
F FV+F E A+KA+D ++ KE+ G+ + SE K R
Sbjct: 233 FGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQ 292
Query: 189 ---LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ + ++ ++V G I K S ++GF FV +
Sbjct: 293 GVNLYVKNLDDSINDERLKEVFSTYG----VITSAKVMTESSHSKGFGFVCF 340
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++E L+++ G + ++M ES SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGTKPLYVALAQRK 371
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 152/325 (46%), Gaps = 24/325 (7%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGL 114
S A A++ +S E D ++E + + GED D LP + +++G L
Sbjct: 2 SAAEANQVQESLEKLNLDSAPVAIQETNVSSGNEGEDAADS----TQLPDTSASLYVGEL 57
Query: 115 PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174
+E L ++ P+G V +R+ +D + +S G+A+V+F E +KAID+L+ +
Sbjct: 58 NPSVNEASLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIDDLNYSLID 117
Query: 175 GKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
G+ R S+ + +FI N+ G + + ++ D Q
Sbjct: 118 GRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGK-ILSCKVATDEQGN 176
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA-- 284
S + F FV Y A+ +R + N N L N + S D + ++KA
Sbjct: 177 S--KCFGFVHY---ETAEAARAAIENVNGMLL-NDREVYVGKHVSKKDRESKFEEMKANF 230
Query: 285 --LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKD 341
+YVKNI S E+++ LF+ +G++T + + GK + FGF+++ +A+KAV++
Sbjct: 231 TNVYVKNIDLGFSEEEMRNLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEE 290
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+I+GQ L V A+ + ++ E
Sbjct: 291 LNDKDINGQNLYVGRAQKKRERIEE 315
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 157/370 (42%), Gaps = 54/370 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D E G SK F FV + + E A+ AI+ +
Sbjct: 140 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EQGNSKCFGFVHYETAEAARAAIENV 198
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK + E+K +++ N+ ++E+E R + E G +
Sbjct: 199 NGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRNLFEPYGK-I 257
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++ L KD + S+ GF FV + ++ A + +++ + + ++G + A K
Sbjct: 258 TSLHLEKDAEGKSK--GFGFVNFESHEAAVKAVEELNDKD--INGQNLYVGRAQKKRERI 313
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ + Q L+VKN+ D+ + K++E F+ G +T + + GK
Sbjct: 314 EELKRQYETARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKS 373
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ FGF+ ++ A KA+ + + G+ L V LA+ + ++++ L
Sbjct: 374 KGFGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQRKDVRRSQ-------------LE 420
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPM---PSGMHMVPMVLPDGQIGYVLQ 438
+ TG G+ F PM YG+ P P+G P P+ Q +
Sbjct: 421 QQIQARNQMRMQNAAATG-GIPGQFIPPMFYGQQPGFFPPNGRGSAPFPGPNPQ----MM 475
Query: 439 QPGVQMPPPR 448
P Q+PPP+
Sbjct: 476 VPRGQIPPPQ 485
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L L + +P G + R+M D E G+SKGF FV F S E A KAI
Sbjct: 333 GVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVD-EHGKSKGFGFVCFSSPEEATKAI 391
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + GK + +L++ K+
Sbjct: 392 TEMNQRMFHGKPLYVALAQRKD 413
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 126/269 (46%), Gaps = 14/269 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L S+ L+ IG V R+ +D + S G+ +V+F + A++A++
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L+ + L G+ IR S+ K +FI N+ K+ + E G + + +
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFG-RILSCK 131
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
++ D S+ G+ FV + CA+ + +K+ N + + PK+ A
Sbjct: 132 IVMDENGQSK--GYGFVHFEKEECAERAIEKI--NNMIIRDRVVYVGKFIPKTERKSQAR 187
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGKRDFGFIHYAERSSALK 337
+ LY+KN P T EK+KE+F GE+ + VM + + FGF+ + + A
Sbjct: 188 KVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAEN 247
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AVK EI+G+ L A+ + +++ E
Sbjct: 248 AVKTMHGKEIEGRALYCARAQRKEERQEE 276
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 146/344 (42%), Gaps = 66/344 (19%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
++I P + E L+++ G++ +MKD E G+SKGF FV F + A+ A+ +
Sbjct: 194 LYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSE-GKSKGFGFVCFLDPDHAENAVKTM 252
Query: 169 HSKELKGKTIRCSLS--------ETKNRL----------FIGNV---PKNWTEDEFRKVI 207
H KE++G+ + C+ + E K RL ++ NV KN ++ K +
Sbjct: 253 HGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRL 312
Query: 208 ED---VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264
E+ V + + +++KD N R++GF FV + N + + + + + N + G+ P
Sbjct: 313 EEAFSVHGSITSAKVMKDANN--RSKGFGFVCFAN---PEQAARAVTDMNGTIIGSKPLY 367
Query: 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVV--MPPGKSGKR 322
A +Q K ++ + I+E QR + V M P G
Sbjct: 368 ------------VALAQRK--------EDRRAKLIEEHQQRMAQYRNPVASMIPAVPG-- 405
Query: 323 DFGFIHYAERSSALKAVKDTEK-YEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
H A S A + T++ Y G VL ++P+ ++ P G +P P
Sbjct: 406 -----HAAPHSFFPPAFQQTQRFYHPSGAVLS---SQPRWNRA--AGIPAQIGGLPNRPP 455
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVP 425
AGY A P A F+ P + R +P+GM +P
Sbjct: 456 VAGYYPSAPNPAAITANQMASFAQFRTPGV-NRPMVPNGMSSIP 498
>gi|357507983|ref|XP_003624280.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499295|gb|AES80498.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 729
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 129/239 (53%), Gaps = 9/239 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL K+A+E DLR + +G++ EVR+ + ++ +KGFA + F + E K+A+ E
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 168 LHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQ 224
L + + GK I + + + L++ N+ K+W ++ ++ ++ G + + L++D
Sbjct: 255 LKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDN 314
Query: 225 NPSRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
N N G +F+ + ++++ Y R + + F +D +S+A+ A QV
Sbjct: 315 NEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVD-KPAEVSFANSFIDLGDDIMA-QV 372
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR--DFGFIHYAERSSALKAV 339
K +++ +P + + ++ L +++G V KV + G R ++GF+ + ++A++
Sbjct: 373 KTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVECA 431
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 126/269 (46%), Gaps = 14/269 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L S+ L+ IG V R+ +D + S G+ +V+F + A++A++
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L+ + L G+ IR S+ K +FI N+ K+ + E G + + +
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFG-RILSCK 131
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
++ D S+ G+ FV + CA+ + +K+ N + + PK+ A
Sbjct: 132 IVMDENGQSK--GYGFVHFEKEECAERAIEKI--NNMIIRDRVVYVGKFIPKTERKSQAR 187
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGKRDFGFIHYAERSSALK 337
+ LY+KN P T EK+KE+F GE+ + VM + + FGF+ + + A
Sbjct: 188 KVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAEN 247
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AVK EI+G+ L A+ + +++ E
Sbjct: 248 AVKTMHGKEIEGRALYCARAQRKEERQEE 276
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 146/344 (42%), Gaps = 66/344 (19%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
++I P + E L+++ G++ +MKD E G+SKGF FV F + A+ A+ +
Sbjct: 194 LYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSE-GKSKGFGFVCFLDPDHAENAVKTM 252
Query: 169 HSKELKGKTIRCSLS--------ETKNRL----------FIGNV---PKNWTEDEFRKVI 207
H KE++G+ + C+ + E K RL ++ NV KN ++ K +
Sbjct: 253 HGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRL 312
Query: 208 ED---VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264
E+ V + + +++KD N R++GF FV + N + + + + + N + G+ P
Sbjct: 313 EEAFSVHGSITSAKVMKDANN--RSKGFGFVCFAN---PEQAARAVTDMNGTIIGSKPLY 367
Query: 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVV--MPPGKSGKR 322
A +Q K ++ + I+E QR + V M P G
Sbjct: 368 ------------VALAQRK--------EDRRAKLIEEHQQRMAQYRNPVASMIPAVPG-- 405
Query: 323 DFGFIHYAERSSALKAVKDTEK-YEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
H A S A + T++ Y G VL ++P+ ++ P G +P P
Sbjct: 406 -----HAAPHSFFPPAFQQTQRFYHPSGAVLS---SQPRWNRA--AGIPAQIGGLPNRPP 455
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVP 425
AGY A P A F+ P + R +P+GM +P
Sbjct: 456 VAGYYPSAPNPAAITANQMASFAQFRTPGV-NRPMVPNGMSSIP 498
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 134/268 (50%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F A++A+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ + E++KELF ++G+ V VM P GKS R FGFI Y + A KA
Sbjct: 190 FTNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPTGKS--RGFGFISYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V+D E++G+ + V A+ + +++ E
Sbjct: 248 VEDMNGTELNGKTVFVGRAQKKMERQAE 275
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 145/331 (43%), Gaps = 47/331 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ + G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMNDERLKELFDKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+++++ DP SR GF F+ Y + A+ + + M +L+G T + A K
Sbjct: 219 -SVKVMTDPTGKSR--GFGFISYEKHEDANKAVEDMNGT--ELNGKTVFVGRAQKKMERQ 273
Query: 272 ---------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAGFQQPMI 411
G P ++ F +G+ P +
Sbjct: 387 -----AGMRAMPANTIINQFQPTSGYFMPAV 412
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEEGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 135/275 (49%), Gaps = 16/275 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P + + +++G L +E L +L IG V +R+ +D + S G+A+V++ S + +
Sbjct: 60 PQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTQDGE 119
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ + GNV KN K + D I
Sbjct: 120 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 179
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHS 276
K Q+ + N +G+ FV Y + A Q + + N L+ + + PK D
Sbjct: 180 SCKVAQDENGNSKGYGFVHYETDEAA---AQAIKHVNGMLLNEKKVYVGYHIPKK--DRQ 234
Query: 277 AAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
+ ++KA +YVKNI + E+ +ELF ++GEVT + GK R FGF+++
Sbjct: 235 SKFEEMKANFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKSRGFGFVNFTT 294
Query: 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+SA KAV++ E GQ L V A+ + +++ E
Sbjct: 295 HASAAKAVEELNGKEFRGQELYVGRAQKKHEREEE 329
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 135/328 (41%), Gaps = 76/328 (23%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E+G SKG+ FV + + E A +AI +
Sbjct: 154 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 212
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K +++ N+ TE+EFR++ G V
Sbjct: 213 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNINHEVTEEEFRELFAKYGE-V 271
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L +D N ++RGF FV + +A A + +++ F+ G + A K +
Sbjct: 272 TSSSLARD--NEGKSRGFGFVNFTTHASAAKAVEELNGKEFR--GQELYVGRAQKKHERE 327
Query: 275 HSA-----AASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VM------- 314
AA KA LY+KN+ D+ +K++++F G +T VM
Sbjct: 328 EELRKSYEAARLEKANKYQGVNLYIKNLADDVDDDKLRQMFSEFGPITSAKVMRDAPPEP 387
Query: 315 PPGKSGKRD------------------------------------FGFIHYAERSSALKA 338
P G G ++ FGF+ ++ A KA
Sbjct: 388 PAGSEGDKEGKDKENKKESEKEGEGEAAEKKTEKKVERKLGKSKGFGFVCFSNPDDATKA 447
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V + + +DG+ L V LA+ + +K++
Sbjct: 448 VAEMNQRMVDGKPLYVALAQRKDVRKSQ 475
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 134/268 (50%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F A++A+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEV--TKVVM-PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ E++KELF ++G+ KV+M P GKS R FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKS--RGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V+D E++G+ + V A+ + +++ E
Sbjct: 248 VEDMNGTELNGKTVFVGRAQKKNERQAE 275
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 146/331 (44%), Gaps = 47/331 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ + G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+++++ DP SR GF FV Y + A+ + + M +L+G T + A K+
Sbjct: 219 -SVKVMMDPTGKSR--GFGFVSYEKHEDANKAVEDMNGT--ELNGKTVFVGRAQKKNERQ 273
Query: 272 ---------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAGFQQPMI 411
G P ++ F +G+ P +
Sbjct: 387 -----AGMRAMPANTIINQFQPTSGYFMPAV 412
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEEGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|357507981|ref|XP_003624279.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499294|gb|AES80497.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 514
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 129/238 (54%), Gaps = 9/238 (3%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+GGL K+A+E DLR + +G++ EVR+ + ++ +KGFA + F + E K+A+ E
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 168 LHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQ 224
L + + GK I + + + L++ N+ K+W ++ ++ ++ G + + L++D
Sbjct: 255 LKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDN 314
Query: 225 NPSRNRGFSFVLY--YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
N N G +F+ + ++++ Y R + + F +D +S+A+ A QV
Sbjct: 315 NEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVD-KPAEVSFANSFIDLGDDIMA-QV 372
Query: 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR--DFGFIHYAERSSALKA 338
K +++ +P + + ++ L +++G V KV + G R ++GF+ + ++A++
Sbjct: 373 KTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVEC 430
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 133/273 (48%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
PN + +++G L +E L +L IG V +R+ +D + S G+A+V++ S ++
Sbjct: 50 PNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGER 109
Query: 164 AIDELHSKELKGKTIRCSLSETKNRLFI---GNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A++EL+ +KGK R S+ L GN+ KN K + D I
Sbjct: 110 ALEELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILS 169
Query: 220 IKDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ S +RG+ FV +Y A A + K +N L+ + PK D +
Sbjct: 170 CKVAQDESGGSRGYGFV-HYETAEAANAAIKSVNGML-LNEKKVFVGHHIPKK--DRMSK 225
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +YVKNI T+ ++ +ELF+++GE+T + + GK R FGF++Y
Sbjct: 226 FEEMKANFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKVRGFGFVNYIRHE 285
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A KAV + + Q L V A+ + +++ E
Sbjct: 286 DANKAVDELNDIDFKSQKLYVGRAQKKHEREEE 318
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 103/228 (45%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ +D ESG S+G+ FV + + E A AI +
Sbjct: 143 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-ESGGSRGYGFVHYETAEAANAAIKSV 201
Query: 169 HSKELKGKTI----------RCS----LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + R S + +++ N+ T+DEFR++ E G +
Sbjct: 202 NGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDTETTDDEFRELFEKYGE-I 260
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L +D + + RGF FV Y + A+ + ++ + +FK + A K +
Sbjct: 261 TSASLARDQE--GKVRGFGFVNYIRHEDANKAVDELNDIDFK--SQKLYVGRAQKKHERE 316
Query: 275 HSA-----AASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVT 310
A Q K+ LYVKN+ D+ E+++++F+ +G +T
Sbjct: 317 EELRRQYEAQRQEKSAKYMGVNLYVKNLADDIDDEELRKVFEAYGSIT 364
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 129/288 (44%), Gaps = 43/288 (14%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + + ++++ R+L E G++ L +D+E G+ +GF
Sbjct: 219 KKDRMSKFEEMKANFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQE-GKVRGFG 277
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIEDV 210
FV++ E A KA+DEL+ + K + +L++G K E+E R+ E
Sbjct: 278 FVNYIRHEDANKAVDELNDIDFKSQ-----------KLYVGRAQKKHEREEELRRQYE-- 324
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
Q ++ + V Y AD + L F+ G+ +
Sbjct: 325 ------------AQRQEKSAKYMGVNLYVKNLADDIDDEELRKVFEAYGSITSAKVMRDT 372
Query: 271 STPDHSAAASQVKALYVKNIPDNTSTEK--------IKELFQRHGEVT----KVVMPPGK 318
+ D A + K +N +++ +K +EL ++ VT K V+ GK
Sbjct: 373 TPADQVENAEEEKKEDGENEAESSEEKKEDEKKEDGTEELTKKLDTVTIGGEKKVL--GK 430
Query: 319 SGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
S + FGF+ ++ A KAV + + I G+ L V LA+ + +K++
Sbjct: 431 S--KGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKSQ 476
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 135/275 (49%), Gaps = 16/275 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P + + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 60 PQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGE 119
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ + GNV KN K + D I
Sbjct: 120 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 179
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHS 276
K Q+ + N +G+ FV Y + A Q + + N L+ + + PK D
Sbjct: 180 SCKVAQDENGNSKGYGFVHYETDEAA---AQAIKHVNGMLLNEKKVYVGYHIPKK--DRQ 234
Query: 277 AAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
+ ++KA +YVKNI + E+ +ELF ++GEVT + + GK R FGF++++
Sbjct: 235 SKFEEMKANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFGFVNFST 294
Query: 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA KAV++ E GQ L V A+ + +++ E
Sbjct: 295 HDSAAKAVEELNGKEFRGQELYVGRAQKKHEREEE 329
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 82/155 (52%), Gaps = 26/155 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + + +EE+ R+L G+V L +D+E G+S+GF
Sbjct: 230 KKDRQSKFEEMKANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQE-GKSRGFG 288
Query: 152 FVSFRSKEFAKKAIDELHSKELKG-------------------KTIRCSLSETKNR---- 188
FV+F + + A KA++EL+ KE +G K+ + +E N+
Sbjct: 289 FVNFSTHDSAAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARAEKANKYQGV 348
Query: 189 -LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+I N+ + +D+ R++ + GP + + ++++D
Sbjct: 349 NLYIKNLADDIDDDKLRQMFSEFGP-ITSAKVMRD 382
>gi|440800287|gb|ELR21326.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 500
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 129/258 (50%), Gaps = 18/258 (6%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP +F+ + + ++++L+D G V + ++K+K +GE+KGF FV F + +
Sbjct: 49 PPLEYGIFVSDIARGVTDQELKDAFSSAGQVTDALVVKNKFTGETKGFGFVKFATLDAVH 108
Query: 163 KAIDEL------HSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
A+D + + +T++ ++ KN L++GN+P+ +ED+ R +++ E
Sbjct: 109 AALDMAVLPSFRDAVSARVQTVKVVRADPKNVLYVGNIPRGLSEDDVRLALQEATTTYEV 168
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN--FKLDGNTPTISWADPKSTPD 274
+ ++G+ + + ++ CA ++L + F L N + A+P++ +
Sbjct: 169 TKFKLCTTLEGESKGYGWATFKDHKCA-VQGMRLLQSTPVFGLYLN---VHMAEPRTQEE 224
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFG--FIHYAER 332
A +VK+L+V+ + T+ E +K F E KVV+P + + G F+H+A R
Sbjct: 225 DMLA--RVKSLFVRGVSPTTNAEAMKAFFGDGCE--KVVIPLDVTTRAVLGHAFVHFATR 280
Query: 333 SSALKAVKDTEKYEIDGQ 350
A A++ + ++G+
Sbjct: 281 QQAEAAMQRCQNATLEGE 298
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 133/275 (48%), Gaps = 16/275 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTSDGE 114
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ + GNV KN K + D I
Sbjct: 115 KALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 174
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHS 276
K Q+ N +G+ FV Y + A +Q + + N L+ + PK D
Sbjct: 175 SCKVAQDEHGNSKGYGFVHYETDEAA---QQAIKHVNGMLLNEKKVYVGHHIPKK--DRQ 229
Query: 277 AAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
+ ++KA +YVKN+ S ++ +ELF+R+GE+T + + GK R FGF++Y
Sbjct: 230 SKFEEMKANFTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQDGKSRGFGFVNYTT 289
Query: 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA KAV + + GQ L V A+ + +++ E
Sbjct: 290 HESAYKAVDELNGKDFKGQDLYVGRAQKKHEREEE 324
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 93/377 (24%), Positives = 159/377 (42%), Gaps = 60/377 (15%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + +AS+++ R+L E G++ L +D++ G+S+GF
Sbjct: 225 KKDRQSKFEEMKANFTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQD-GKSRGFG 283
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIEDV 210
FV++ + E A KA+DEL+ K+ KG+ L++G K E+E RK
Sbjct: 284 FVNYTTHESAYKAVDELNGKDFKGQD-----------LYVGRAQKKHEREEELRK----- 327
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
E L K S+ +G + LY N D +K L F G P S +
Sbjct: 328 --SYEAARLEK----ASKYQGVN--LYIKNLDDDVDDEK-LRHMFSEFG--PITSAKVMR 376
Query: 271 STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHY 329
P + + + + E +E ++ G+ K GK + FGF+ +
Sbjct: 377 DAPSDGSDEEKEDEQEAEPKKEGNVVEADEEGSEKKGD--------KKFGKSKGFGFVCF 428
Query: 330 AERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFA 389
+ A KAV + + I+G+ L V LA+ + +K++ L A
Sbjct: 429 SNPDDATKAVAEMSQRMINGKPLYVALAQRKDVRKSQLEASIQ---ARNQLRMQQAAAAA 485
Query: 390 GTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMPPPRP 449
G P + Q P+ YG+ P +P G G QPG+ M +
Sbjct: 486 GMPQQYM----------QPPVFYGQ---------QPGFMPQGGRGMPFPQPGMGMAGVQG 526
Query: 450 RRVDRSNGPGGRGGRGG 466
R + G +GGRGG
Sbjct: 527 GRPGQFPGYPQQGGRGG 543
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 126/269 (46%), Gaps = 14/269 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L S+ L+ IG V R+ +D + S G+ +V+F + A++A++
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L+ + L G+ IR S+ K +FI N+ K+ + E G + + +
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFG-RILSCK 131
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
++ D S+ G+ FV + CA+ + +K+ N + + PK+ A
Sbjct: 132 IVMDENGQSK--GYGFVHFEKEECAERAIEKI--NNMIIRDRVVYVGKFIPKTERKSQAR 187
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGKRDFGFIHYAERSSALK 337
+ LY+KN P T EK+KE+F GE+ + VM + + FGF+ + + A
Sbjct: 188 KVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAEN 247
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AVK EI+G+ L A+ + +++ E
Sbjct: 248 AVKTMHGKEIEGRALYCARAQRKEERQEE 276
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 146/344 (42%), Gaps = 66/344 (19%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
++I P + E L+++ G++ +MKD E G+SKGF FV F + A+ A+ +
Sbjct: 194 LYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSE-GKSKGFGFVCFLDPDHAENAVKTM 252
Query: 169 HSKELKGKTIRCSLS--------ETKNRL----------FIGNV---PKNWTEDEFRKVI 207
H KE++G+ + C+ + E K RL ++ NV KN ++ K +
Sbjct: 253 HGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRL 312
Query: 208 ED---VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264
E+ V + + +++KD N R++GF FV + N + + + + + N + G+ P
Sbjct: 313 EEAFSVHGSITSAKVMKDANN--RSKGFGFVCFAN---PEQAARAVTDMNGTIIGSKPLY 367
Query: 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVV--MPPGKSGKR 322
A +Q K ++ + I+E QR + V M P G
Sbjct: 368 ------------VALAQRK--------EDRRAKLIEEHQQRMAQYRNPVASMIPAVPG-- 405
Query: 323 DFGFIHYAERSSALKAVKDTEK-YEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
H A S A + T++ Y G VL ++P+ ++ P G +P P
Sbjct: 406 -----HAAPHSFFPPAFQQTQRFYHPSGAVLS---SQPRWNR--AAGIPAQIGGLPNRPP 455
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVP 425
AGY A P A F+ P + R +P+GM +P
Sbjct: 456 VAGYYPSAPNPAAITANQMASFAQFRTPGV-NRPMVPNGMSSIP 498
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 137/273 (50%), Gaps = 21/273 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D + S G+A+V+F A++A+D
Sbjct: 109 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQRALD 168
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK IR S+ L FI N+ ++ + G + + +
Sbjct: 169 TMNFDTIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGK-ILSSK 227
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q +RG++FV + N AD + ++M A K + K+ D A
Sbjct: 228 VMSDDQG---SRGYAFVHFQNQIAADRAIEEMNGALLK----DCRLFVGRFKNRKDREAE 280
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
A++ +Y+KN D+ E++KE+F ++G+ V + SGK + FGF+ +
Sbjct: 281 LRNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 340
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A KAV++ +I+GQ+L V A+ +++++ E
Sbjct: 341 AAKKAVEEMNGKDINGQLLFVGRAQKKSERQAE 373
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + V+I D +E L+++ G V++M D SG+SKG
Sbjct: 272 KNRKDREAELRNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTD-SSGKSKG 330
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
F FVSF S E AKKA++E++ K++ G+ + ++ K+
Sbjct: 331 FGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKS 368
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 121/280 (43%), Gaps = 41/280 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + + L + G + ++M D + S+G+AFV F+++ A +AI+E+
Sbjct: 199 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG--SRGYAFVHFQNQIAADRAIEEM 256
Query: 169 HSKELKGKTIRCSLSETKNR----------------LFIGNVPKNWTEDEFRKVIEDVGP 212
+ LK R + KNR ++I N + ++ ++V G
Sbjct: 257 NGALLK--DCRLFVGRFKNRKDREAELRNKANEFTNVYIKNFGDDMDDERLKEVFSKYGK 314
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A KS
Sbjct: 315 TL-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGKD--INGQLLFVGRAQKKS- 368
Query: 273 PDHSAAASQV--------------KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK 318
+ A QV LY+KN+ D EK+ F G +++V + +
Sbjct: 369 -ERQAELKQVFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMREE 427
Query: 319 SGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
+ FG I ++ A KA+ + + + L + LA+
Sbjct: 428 GRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLYIALAQ 467
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 138/280 (49%), Gaps = 21/280 (7%)
Query: 100 LALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
+A + +++G L D +E+ L +G V +R+ +D + S G+A+V+F
Sbjct: 3 IAAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLA 62
Query: 160 FAKKAIDELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVG 211
A+KA+D ++ +KGK+IR S+ L FI N+ K+ + G
Sbjct: 63 DAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFG 122
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
+ + +++ D Q RG++FV + N AD + ++M A K + K+
Sbjct: 123 KILSS-KVMSDDQGS---RGYAFVHFQNQIAADRAIEEMNGALLK----DCRLFVGRFKN 174
Query: 272 TPDHSA----AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGF 326
D A A++ +Y+KN D+ E++KE+F ++G+ V + SGK + FGF
Sbjct: 175 RKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGF 234
Query: 327 IHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ + +A KAV++ +I+GQ+L V A+ + +++ E
Sbjct: 235 VSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAE 274
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + V+I D +E L+++ G V++M+D SG+SKG
Sbjct: 173 KNRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRD-SSGKSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN---------------------- 187
F FVSF S E AKKA++E++ K++ G+ + ++ K
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQ 291
Query: 188 --RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ + +++ R+ G +I +K Q R++GF + +
Sbjct: 292 GVKLYIKNLDETIDDEKLRREFSSFG----SISRVKVMQEEGRSKGFGLICF 339
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 122/272 (44%), Gaps = 42/272 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + S+G+AFV F+++ A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SRGYAFVHFQNQIAADRAIEEM 157
Query: 169 HSKELKGKTIRCSLSETKNR----------------LFIGNVPKNWTEDEFRKVIEDVGP 212
+ LK R + KNR ++I N + ++ ++V G
Sbjct: 158 NGALLK--DCRLFVGRFKNRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGK 215
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS- 271
+ ++++++D S+ GF FV + ++ A + ++M + ++G + A K+
Sbjct: 216 TL-SVKVMRDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGKD--INGQLLFVGRAQKKAE 270
Query: 272 -TPDHSAAASQVK----------ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
+ Q+K LY+KN+ + EK++ F G +++V + +
Sbjct: 271 RQAELKQMFEQLKRERFRRCQGVKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEEGR 330
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352
+ FG I ++ A KA+ E++G++L
Sbjct: 331 SKGFGLICFSSPEEATKAMT-----EMNGRIL 357
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 138/273 (50%), Gaps = 21/273 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D + S G+A+V+F A+KA+D
Sbjct: 203 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVADAQKALD 262
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 263 TMNFDVIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSTFGK-ILSSK 321
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q ++G++FV + N + AD + ++M N L N + + KS D +
Sbjct: 322 VMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGTLLKNC-RVFVSRFKSRKDRESE 374
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN D+ ++KE+F ++G V + SGK + FGF+ +A
Sbjct: 375 LKNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFVSFASHE 434
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A AV++ +I+GQ++ V A+ + +++ E
Sbjct: 435 AAKNAVEEMNGKDINGQLIFVGRAQKKIERQAE 467
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 127/285 (44%), Gaps = 37/285 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 293 VFIKNLDKSIDNKTLYEHFSTFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 350
Query: 169 HSKELKGKTIRCSL--------SETKNR------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ LK + S SE KN+ ++I N + + ++V G +
Sbjct: 351 NGTLLKNCRVFVSRFKSRKDRESELKNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTL 410
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+++++ D S+ GF FV + ++ A + ++M N K D N I + +
Sbjct: 411 -SVKVMTDSSGKSK--GFGFVSFASHEAAKNAVEEM---NGK-DINGQLIFVGRAQKKIE 463
Query: 275 HSAAASQV--------------KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
A Q+ LY+KN+ D EK+++ F G +++V + +
Sbjct: 464 RQAELKQMFEQLRQERFRRCRGVKLYIKNLDDTIDDEKLRKEFASFGSISRVKVMQEEGR 523
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKT 365
+ FG I ++ A+KA+ + + + L + LA+ ++KT
Sbjct: 524 SKGFGLICFSSHEEAIKAMTEMNGRILGSKPLNIALAQRNEERKT 568
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 32/197 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ KD+ ++L + V+I D + L+++ G V++M D SG+SKG
Sbjct: 366 KSRKDRESELKNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTD-SSGKSKG 424
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AK A++E++ K++ G+ I ++ K
Sbjct: 425 FGFVSFASHEAAKNAVEEMNGKDINGQLIFVGRAQKKIERQAELKQMFEQLRQERFRRCR 484
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
+L+I N+ +++ RK G +I +K Q R++GF + + ++ +
Sbjct: 485 GVKLYIKNLDDTIDDEKLRKEFASFG----SISRVKVMQEEGRSKGFGLICFSSH---EE 537
Query: 246 SRQKMLNANFKLDGNTP 262
+ + M N ++ G+ P
Sbjct: 538 AIKAMTEMNGRILGSKP 554
>gi|355715816|gb|AES05411.1| RNA binding motif protein 46 [Mustela putorius furo]
Length = 149
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 92/150 (61%), Gaps = 2/150 (1%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI L
Sbjct: 1 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIRIL 59
Query: 169 HSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
++ E++ GK I +S RLFIG +PK ++E ++ V GV + + + +
Sbjct: 60 NNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKT 119
Query: 228 RNRGFSFVLYYNNACADYSRQKMLNANFKL 257
+NRGF+FV Y ++ A +R+K++ F+L
Sbjct: 120 KNRGFAFVEYESHRAAAMARRKLIPGTFQL 149
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 139/300 (46%), Gaps = 32/300 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K+ + L D G + ++ D E GES+G+ FV F +E A+KAID +
Sbjct: 98 IFIKNLNKEIDNKALYDTFSAFGTILSCKVAAD-EKGESRGYGFVHFEKEEDAQKAIDTV 156
Query: 169 HSKELKGKTIRCS--LSE---------TKNRLFIGNVPKNW-TEDEFRKVIEDVGPGVET 216
+ K L + + + LS T +++ N+P ++ T D+ +K+ E G T
Sbjct: 157 NGKMLLKQVVTVTKFLSRKEREQQGGRTYTNIYVKNLPDSYATNDDLKKLFEKFGTITST 216
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276
L KD + SR GF FV + N+ A+ + + M + D + A K +
Sbjct: 217 F-LAKDENDKSR--GFGFVNFENSEAANAAVEAMNEKEIETDRKL-FVGRAMKKHERERE 272
Query: 277 AAASQVKA------------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRD 323
K LY+K++P++ + + +++ F + G +T + +M R
Sbjct: 273 LKRIHDKIRQERDEKNKNSNLYIKHLPEDVTEDALRDKFSKFGTITSLKIMTDNNGDSRG 332
Query: 324 FGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE-GTFPYSPGLVPT-HLP 381
FGF+++ A A+++ IDG+ L V LA + D++ + + PG +P +LP
Sbjct: 333 FGFVNFDSADEAAAAIQEMHGSMIDGKPLYVALALRKVDRQKQLASRRTMPGQMPMGYLP 392
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 116/249 (46%), Gaps = 10/249 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L + +E L + +G V +R+ +D S +S G+A+V+++ AK A++
Sbjct: 8 ASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHALE 67
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
EL+ +++ K R ++ R GN+ KN ++ K + D TI K
Sbjct: 68 ELNFEKIHDKPCRIMWAQRNPAARRSGAGNIFIKNLNKEIDNKALYDTFSAFGTILSCKV 127
Query: 223 PQN-PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ +RG+ FV + A + +N L + K
Sbjct: 128 AADEKGESRGYGFVHFEKEEDAQKAIDT-VNGKMLLKQVVTVTKFLSRKEREQQ--GGRT 184
Query: 282 VKALYVKNIPDNTST-EKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAV 339
+YVKN+PD+ +T + +K+LF++ G +T + ++ K R FGF+++ +A AV
Sbjct: 185 YTNIYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDENDKSRGFGFVNFENSEAANAAV 244
Query: 340 KDTEKYEID 348
+ + EI+
Sbjct: 245 EAMNEKEIE 253
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S ++I LP+D +E+ LRD G + +++M D +G+S+GF FV+F S + A AI
Sbjct: 291 SNLYIKHLPEDVTEDALRDKFSKFGTITSLKIMTDN-NGDSRGFGFVNFDSADEAAAAIQ 349
Query: 167 ELHSKELKGKTIRCSLSETK 186
E+H + GK + +L+ K
Sbjct: 350 EMHGSMIDGKPLYVALALRK 369
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 86/186 (46%), Gaps = 11/186 (5%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
L++G++ TE + +G V +I + +D + ++ G+++V Y +A A ++ +
Sbjct: 10 LYVGDLHPEVTEATLYEFFSQMG-SVISIRVCRDAVS-RQSLGYAYVNYQQHADAKHALE 67
Query: 249 KMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
++ NF+ + P I WA S A + +++KN+ + + + F G
Sbjct: 68 EL---NFEKIHDKPCRIMWAQRNPAARRSGAGN----IFIKNLNKEIDNKALYDTFSAFG 120
Query: 308 EVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ + + G+ R +GF+H+ + A KA+ + QV+ V + +++ +
Sbjct: 121 TILSCKVAADEKGESRGYGFVHFEKEEDAQKAIDTVNGKMLLKQVVTVTKFLSRKEREQQ 180
Query: 367 GTFPYS 372
G Y+
Sbjct: 181 GGRTYT 186
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 128/269 (47%), Gaps = 14/269 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L S+ L+ IG V R+ +D + +S G+ +V+F + A++A++
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALE 72
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L+ + L G+ IR S+ K +FI N+ K+ + E G + + +
Sbjct: 73 VLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGR-ILSCK 131
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
++ D S+ G+ FV + CA+ + +K+ N + + PK+ A
Sbjct: 132 IVMDENGQSK--GYGFVHFEKEECAERAIEKI--NNMIIRDRVVYVGKFIPKTERKSQAR 187
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGKRDFGFIHYAERSSALK 337
+ LYVKN P T EK+KE+F GE+ + VM + + FGF+ Y + A
Sbjct: 188 KVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAEN 247
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV+ EI+G+VL A+ + +++ E
Sbjct: 248 AVRTMHGKEIEGRVLYCARAQRKEERQEE 276
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 146/301 (48%), Gaps = 15/301 (4%)
Query: 75 TPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF 134
TPH + K + KDK + A S +++G L D +E+ L G V
Sbjct: 106 TPH-RDCSKSSRGQAHSGKDKEMSVAAKYRMAS-LYVGDLHADVTEDLLFRKFSAAGPVL 163
Query: 135 EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLF---I 191
+R+ +D+ + S G+A+V+F A+KA+D ++ +KGK+IR S+ L I
Sbjct: 164 SIRICRDQVTRRSLGYAYVNFLQLTDAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGI 223
Query: 192 GNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM 250
GNV KN + K + + G I K + ++G++FV + N + AD + ++M
Sbjct: 224 GNVFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEM 283
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSA----AASQVKALYVKNIPDNTSTEKIKELFQRH 306
K + + K+ D A AS+ +Y+KN + E++K++F ++
Sbjct: 284 NGRLLK----SCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKY 339
Query: 307 GEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKT 365
G+ V VM + + FGF+ + +A KAV++ +I+GQ++ V A+ + +++
Sbjct: 340 GKTLSVKVMTDSRGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 399
Query: 366 E 366
E
Sbjct: 400 E 400
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 122/278 (43%), Gaps = 35/278 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 226 VFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 283
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ + LK + R SE N ++I N + ++ + V G
Sbjct: 284 NGRLLKSCKVFVGRFKNRKDREAELRSKASEFTN-IYIKNFGGDMDDERLKDVFSKYGKT 342
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--S 271
+ +++++ D + S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 343 L-SVKVMTDSRGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 397
Query: 272 TPDHSAAASQVK----------ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
+ Q+K LYVKN+ D EK++ F G + +V + +
Sbjct: 398 QAELKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQQEGQS 457
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359
+ FGFI ++ A KA+ + + + + + LA+
Sbjct: 458 KGFGFICFSSLEDATKAMIEMNGRFLGSKPISIALAQS 495
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++++ L +E LR+ G + V++M+ + G+SKGF F+ F S E A KA+
Sbjct: 418 GVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQ--QEGQSKGFGFICFSSLEDATKAM 475
Query: 166 DELHSKELKGKTIRCSLSET 185
E++ + L K I +L+++
Sbjct: 476 IEMNGRFLGSKPISIALAQS 495
>gi|326505362|dbj|BAK03068.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 601
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 111/224 (49%), Gaps = 32/224 (14%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ ++F G +P++ E +LRD+ E G VF++ +++DK++GESKG FV+F S++ A
Sbjct: 34 PDAIKMFCGQIPRNMHEAELRDMFEQFGPVFQLNVLRDKQTGESKGCCFVTFYSRKSALD 93
Query: 164 AIDELHS-KELKGKT--IRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVET 216
A + LH+ + L G I+ ++T+NR LF+G V KN E R + + G +E
Sbjct: 94 AQNALHNLRTLNGSHHPIQMKPADTENRNERKLFVGMVSKNLDEPNIRSLFQSYG-TIED 152
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP-TISWADPKSTPDH 275
+++D ++RG +FV + CA + + M + ++P + +AD
Sbjct: 153 CTVLRDAN--GKSRGCAFVTFQKRQCALNAIKSMHQSQTMEGCSSPLVVKFAD------- 203
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS 319
P + T+KI++ + H PPG S
Sbjct: 204 --------------TPKDKETKKIQQQYTTHNNGLMQQFPPGAS 233
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 13/183 (7%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
++F G +P+N E E R + E GP V + +++D Q ++G FV +Y+ A
Sbjct: 38 KMFCGQIPRNMHEAELRDMFEQFGP-VFQLNVLRDKQT-GESKGCCFVTFYSRKSA-LDA 94
Query: 248 QKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
Q L+ L+G+ I P T + + + L+V + N I+ LFQ +G
Sbjct: 95 QNALHNLRTLNGSHHPIQM-KPADTENRNE-----RKLFVGMVSKNLDEPNIRSLFQSYG 148
Query: 308 EVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKD---TEKYEIDGQVLEVVLAKPQTDK 363
+ + +GK R F+ + +R AL A+K ++ E L V A DK
Sbjct: 149 TIEDCTVLRDANGKSRGCAFVTFQKRQCALNAIKSMHQSQTMEGCSSPLVVKFADTPKDK 208
Query: 364 KTE 366
+T+
Sbjct: 209 ETK 211
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+G+ +FI LP++ ++ DL G + ++ DK + SK F FVSF + A+
Sbjct: 478 PDGANLFIYHLPQEYNDTDLAQAFASYGQIISAKVFVDKTTNRSKCFGFVSFDNPASAQA 537
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI++++ ++ K ++ L + +
Sbjct: 538 AINQMNGFQIGMKRLKVQLKKLR 560
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 134/268 (50%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 72 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 131
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 132 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAEMGAKAKE 190
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ +++KELF ++G+ V VM P GKS R FGF+ Y + A KA
Sbjct: 191 FTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKS--RGFGFVSYEKHEDANKA 248
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ E++G+ + V A+ + +++ E
Sbjct: 249 VEEMNGTELNGKTVFVGRAQKKMERQAE 276
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 145/331 (43%), Gaps = 47/331 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 159
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + + +++ + G +
Sbjct: 160 NGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTL 219
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ DP SR GF FV Y + A+ + ++M +L+G T + A K
Sbjct: 220 -SVKVMTDPTGKSR--GFGFVSYEKHEDANKAVEEMNGT--ELNGKTVFVGRAQKKMERQ 274
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 275 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS- 333
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 334 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI----- 387
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAGFQQPMI 411
G P ++ F A G+ P +
Sbjct: 388 -----AGMRAMPANAIINQFQPAGGYFMPAV 413
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 294 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEEGRSKGFGFVCFSSPEEATKAV 351
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 352 TEMNGRIVGSKPLYVALAQRK 372
>gi|313212996|emb|CBY36886.1| unnamed protein product [Oikopleura dioica]
Length = 404
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 8/171 (4%)
Query: 180 CSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYN 239
CS S RLF+G +PK+ ++E ++ V V + + + ++NRGF+FV Y
Sbjct: 238 CS-SVDNCRLFVGGIPKSRKKEEIMHELKKVTDKVADVIVYPSAADKNKNRGFAFVEYET 296
Query: 240 NACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKI 299
+ A +R+K+++ +L GN + WA+P+ D +VK LYV+N+ TS E +
Sbjct: 297 HKAAAMARRKLVSGRVQLWGNPIAVDWAEPEEDVDDD-IMKEVKVLYVRNLLIETSEESL 355
Query: 300 KELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ 350
+ F ++G+V +V RD+ F+H+ ER SA AVK +DG+
Sbjct: 356 RAHFSQYGQVERV------KKIRDYAFVHFVERESADAAVKAGCSQRLDGE 400
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 159/362 (43%), Gaps = 52/362 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ ++ D SG+SKG+ FV + S+E A+KAI++L
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKVAVD-SSGQSKGYGFVQYDSEEAAQKAIEKL 175
Query: 169 HSKELKGKTIRCS---------LSETKNR---LFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+ L K + ++ K R +F+ N+ ++ E+E RK+ + G + +
Sbjct: 176 NGMLLNDKQVYVGPFVRKHERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFG-AITS 234
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS----- 271
+ ++KD SR GF + + NA D +R +KLD + A KS
Sbjct: 235 VAVMKDEDGKSRCFGF---VNFENA-EDAARAVEALNGYKLDNKDWFVGRAQKKSEREME 290
Query: 272 -------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKR 322
+ + SQ LY+KN+ D+ S EK+KELF +G +T KV+ P K
Sbjct: 291 LKHRFEQSAKEAVDKSQGLNLYIKNLDDSISDEKLKELFSPYGTITSCKVMRDPSGVSKG 350
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPG-------- 374
GF+ ++ A +A+ + + + L V LA+ + +++ +S
Sbjct: 351 S-GFVAFSNPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPIAMASS 409
Query: 375 ------LVPTHLPHAGYGGFAGTPYGSV---GTGFGVAAGFQQPMIYGRGPMPSGMHMVP 425
+ P P G F G P ++ GFG M G GPMP+ +P
Sbjct: 410 VAPRMPMYPPGGPGLGQQIFYGQPQPAMLPPQAGFGYQQQLVPGMRPGGGPMPN--FFMP 467
Query: 426 MV 427
MV
Sbjct: 468 MV 469
>gi|270002294|gb|EEZ98741.1| hypothetical protein TcasGA2_TC001296 [Tribolium castaneum]
Length = 339
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 128/263 (48%), Gaps = 15/263 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEVF+G +P S+++L + G V+ + M D ++G +K FAF+S+ + E A
Sbjct: 28 PPPGSEVFVGNIPSVISDDELIFIFSEAGRVYRFQRMID-DNGNNKPFAFISYHNDEDAN 86
Query: 163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
KA+ H + K + + LS RL+ GN+P+ T+++ + + + + ++
Sbjct: 87 KAVLFFHKFSIRKHRKLNVHLSVNNCRLYFGNIPREMTKEDVMLNLLNFIEKIVKVLVLP 146
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA--DPKSTPDHSAAA 279
N + NRG++FV + ++ A +++++ L G T+ WA +P P
Sbjct: 147 SRCNTALNRGYAFVDFVSHTLAAFAKRQ-LELGLFWGGRHITVEWAYREPLVPP---FIF 202
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD-FGFIHYAERSSALKA 338
Q+K L KNIP + S ++ +T V + K+D F+H+ +A A
Sbjct: 203 LQIKCLIFKNIPIDCSRCVFRKFLSLFVHITTV----RRIYKKDSHAFVHFQSWEAAEIA 258
Query: 339 VKDTEKY--EIDGQVLEVVLAKP 359
+K + I + + V A+P
Sbjct: 259 IKTLRSHILRIYDREIRVEWARP 281
>gi|440800608|gb|ELR21644.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 417
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 118/258 (45%), Gaps = 28/258 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FIG L + +E+ LR+ +P G V V + +D+ + S G+ FV +S+E A A +
Sbjct: 65 LFIGDLARGLNEDQLREAFDPFG-VISVEIKRDRVTNYSLGYGFVLLKSREDAGAAKKAM 123
Query: 169 HSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSR 228
H + + G+ IR ++ LFIG++ + T + R+V GP E +K
Sbjct: 124 HRQVVGGRAIRIGWAQKNTNLFIGDLDPSITSAQLREVFRQFGPIYEEETFVK------- 176
Query: 229 NRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVK 288
NR + FV + + A+ ++++M N L I W D A Q ++++
Sbjct: 177 NRNYGFVRFRHRKHAEMAKREMNNK--VLGARAIRIGWGD---------ANYQRHCVHIQ 225
Query: 289 NIPDN----TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHY----AERSSALKAVK 340
P T +E I + F+ G V V +P + R FGFI+Y A +SA +A+
Sbjct: 226 FEPAESEALTESEVIAK-FEEFGTVMSVNLPRNQGQLRGFGFIYYDDTDAGENSAARAIT 284
Query: 341 DTEKYEIDGQVLEVVLAK 358
I G ++ K
Sbjct: 285 TLNNSPICGVRIQCNYGK 302
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 15/137 (10%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +FIG L + LR++ G ++E ++ +++ + FV FR ++ A+ A
Sbjct: 142 TNLFIGDLDPSITSAQLREVFRQFGPIYE-----EETFVKNRNYGFVRFRHRKHAEMAKR 196
Query: 167 ELHSKELKGKTIRCSLSETKNRLFIGNV------PKNWTEDEFRKVIEDVGPGVETIELI 220
E+++K L + IR + + ++ + TE E E+ G T+ +
Sbjct: 197 EMNNKVLGARAIRIGWGDANYQRHCVHIQFEPAESEALTESEVIAKFEEFG----TVMSV 252
Query: 221 KDPQNPSRNRGFSFVLY 237
P+N + RGF F+ Y
Sbjct: 253 NLPRNQGQLRGFGFIYY 269
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 132/273 (48%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
PN + +++G L +E L +L IG V +R+ +D + S G+A+V++ S ++
Sbjct: 53 PNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGER 112
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A++EL+ +KGK R S+ + GNV KN K + D I
Sbjct: 113 ALEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILS 172
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A S K +N L+ + PK D +
Sbjct: 173 CKVAQDEHGNSKGYGFV-HYETAEAANSAIKSVNGML-LNEKKVFVGHHIPKK--DRMSK 228
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +YVKNI + ++ + LF+++G++T + + GK R FGF++Y
Sbjct: 229 FEEMKANFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKSRGFGFVNYIRHE 288
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A KAV++ + GQ L V A+ + +++ E
Sbjct: 289 DANKAVEELNNSDFKGQALYVGRAQKKHEREEE 321
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 146 VFIKNLDGAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETAEAANSAIKSV 204
Query: 169 HSKELKGKTI----------RCS----LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + R S + +++ N+ T+DEFR + E G +
Sbjct: 205 NGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDPEATDDEFRALFEKYGD-I 263
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L D + ++RGF FV Y + A+ + +++ N++FK G + A K
Sbjct: 264 TSASLAHDQE--GKSRGFGFVNYIRHEDANKAVEELNNSDFK--GQALYVGRAQKKHERE 319
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
+ +A Q LYVKN+ D ++++++F+ +G +T
Sbjct: 320 EELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDDELRKIFEPYGAIT 367
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
G+SKGF FV F + + A KA+ EL+ K + GK + +L++ K
Sbjct: 439 GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRK 480
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 132/268 (49%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI+G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEINGKIIFVGRAQKKVERQAE 275
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 136/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N +++G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EINGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 140/286 (48%), Gaps = 25/286 (8%)
Query: 91 DEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF 150
D K +HA L ++G LP D +E+ L P+G V +R+ +D + S G+
Sbjct: 4 DAKYRHASL----------YVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGY 53
Query: 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKV 206
A+V+F + A+K +D ++ ++GK+IR S+ L IGNV KN K+
Sbjct: 54 AYVNFLNLADAQKVLDTMNFDMIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKM 113
Query: 207 IEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266
+ + I K + +RG++FV + + + AD + ++M A K N +
Sbjct: 114 LYEHFSAFGKILSSKVMSDDKGSRGYAFVHFQSQSAADRAIEEMNGALLK---NCRL--F 168
Query: 267 ADPKSTPDHSAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
P A Q KA +Y+KN D+ E++KE+F ++G++ V + SGK
Sbjct: 169 VGPFKNRKEREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGK 228
Query: 322 -RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ + +A +AV+ +I GQ++ V A+ + +++ E
Sbjct: 229 SKGFGFVSFDTHEAAQRAVEYMNGKDICGQMVFVGRAQKKAERQAE 274
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 118/272 (43%), Gaps = 42/272 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + + L + G + ++M D + S+G+AFV F+S+ A +AI+E+
Sbjct: 100 VFIKNLDRSIDNKMLYEHFSAFGKILSSKVMSDDKG--SRGYAFVHFQSQSAADRAIEEM 157
Query: 169 HSKELKGKTIRCSLSETKNR----------------LFIGNVPKNWTEDEFRKVIEDVGP 212
+ LK R + KNR ++I N + ++ ++V G
Sbjct: 158 NGALLK--NCRLFVGPFKNRKEREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGK 215
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS- 271
V +++++ D S+ GF FV + + A + + M + + G + A K+
Sbjct: 216 IV-SVKVMTDSSGKSK--GFGFVSFDTHEAAQRAVEYMNGKD--ICGQMVFVGRAQKKAE 270
Query: 272 -TPDHSAAASQVK----------ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
+ Q+K LY+KN+ + E+++ F G +++V + +
Sbjct: 271 RQAELKQMFEQLKRERFGRCRGVKLYIKNLDETIDEEQLRRAFSSFGSMSRVKVMEEEGR 330
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352
+ FG I ++ A KA+ E++GQVL
Sbjct: 331 SKGFGLICFSCPEEATKAMA-----EMNGQVL 357
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 132/268 (49%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + KV+ D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 144/325 (44%), Gaps = 47/325 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAG 405
G P ++ F AAG
Sbjct: 387 -----AGMRALPANAILNQFQPAAG 406
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 127/258 (49%), Gaps = 14/258 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L DL PIG V +R+ +D + S G+A+V+F E K+AI+
Sbjct: 47 TSLYVGELDPSVSEALLYDLFSPIGSVASIRVCRDAITKTSLGYAYVNFSDHEAGKQAIE 106
Query: 167 ELHSKELKGKTIRCSLSETKNRLFI---GNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
+L+ +KGK R S+ L GN+ KN +D K + D I K
Sbjct: 107 KLNYTPIKGKLCRIMWSQRDPSLRKKGHGNIFIKNLNQDIDNKALFDTFSVFGNILSSKI 166
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ + +++GF FV + + A+ + ++A + N I A + + + +
Sbjct: 167 ATDETGKSKGFGFVHFEEESAAN----EAIDALNGMLLNGQEIYVAPHLTRKERDSQLEE 222
Query: 282 VKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
KA +YVKNI T+ E+ KE F + G VT V + G GK + FGF++Y + + A+
Sbjct: 223 TKAHFTNVYVKNIDLETTDEEFKEFFGKIGTVTSVALERGPDGKLKGFGFVNYEDHNDAV 282
Query: 337 KAVKDTEKYEIDGQVLEV 354
KAV++ E Q L V
Sbjct: 283 KAVEELNGAEFKDQELFV 300
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 154/353 (43%), Gaps = 51/353 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L +D + L D G++ ++ D E+G+SKGF FV F + A +AID L
Sbjct: 137 IFIKNLNQDIDNKALFDTFSVFGNILSSKIATD-ETGKSKGFGFVHFEEESAANEAIDAL 195
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK +++ N+ T++EF++ +G V
Sbjct: 196 NGMLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKNIDLETTDEEFKEFFGKIGT-V 254
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++ L + P + +GF FV Y ++ A + +++ A FK + A K
Sbjct: 255 TSVALERGPD--GKLKGFGFVNYEDHNDAVKAVEELNGAEFK--DQELFVGRAQKKYERI 310
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
ST A Q L+VKN+ D+ EK++E F G +T V + ++GK
Sbjct: 311 QSLKKQYESTRLEKMAKYQGVNLFVKNLDDSIDDEKLQEEFAPFGNITSVKVMRTENGKS 370
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++ + +
Sbjct: 371 KGFGFVCFSSPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ---------LAQQIQ 421
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYG---------RGPMPSGMHMVP 425
+ + G+ F PM YG GP P M+ VP
Sbjct: 422 ARNQMRYQQATAAAAAAAAGIPGQFMPPMFYGVMPPRGVPFNGPNPQQMNGVP 474
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 9/149 (6%)
Query: 39 GDGNFEENDDDEEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQ 98
G N+E+++D + GA KDQ R ++ +K S ++ K+
Sbjct: 271 GFVNYEDHNDAVKAVEELNGAEFKDQELFVGRAQKKYERIQSLKKQYESTRLEKMAKY-- 328
Query: 99 LLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK 158
G +F+ L +E L++ P G++ V++M+ E+G+SKGF FV F S
Sbjct: 329 ------QGVNLFVKNLDDSIDDEKLQEEFAPFGNITSVKVMR-TENGKSKGFGFVCFSSP 381
Query: 159 EFAKKAIDELHSKELKGKTIRCSLSETKN 187
E A KAI E + + + GK + ++++ K+
Sbjct: 382 EEATKAITEKNQQIVAGKPLYVAIAQRKD 410
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 133/272 (48%), Gaps = 14/272 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S E +KA
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 165 IDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
++EL+ +KGK R S+ + GNV KN K + D I
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 165
Query: 221 KDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K Q+ N +G+ FV +Y A A + K +N L+ + PK + +
Sbjct: 166 KVAQDELGNSKGYGFV-HYETAEAANNAIKHVNGML-LNEKKVFVGHHIPKK--ERMSKF 221
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
++KA +YVKNI + S E+ +ELF++HG++T + + GK R FGF++Y + +
Sbjct: 222 EEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEA 281
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A AV + GQ L V A+ + +++ E
Sbjct: 282 ASAAVDALNDTDFRGQKLYVGRAQKKHEREEE 313
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 91/399 (22%), Positives = 156/399 (39%), Gaps = 102/399 (25%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 169 HSKELKGKTI----------RCS----LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + R S + +++ N+ + +++EFR++ E G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHG-DI 255
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ + +D Q ++RGF FV Y + A + + + +F+ G + A K +
Sbjct: 256 TSASIARDEQ--GKSRGFGFVNYIKHEAASAAVDALNDTDFR--GQKLYVGRAQKKHERE 311
Query: 275 ------HSAAASQVKA------LYVKNIPDNTSTEKIKELFQRHGEVTKV-----VMPP- 316
+ AA + ++ LY+KN+ D+ EK++++F G +T MP
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAE 371
Query: 317 -------------------------GKSGKRD----------------------FGFIHY 329
G K+D FGF+ +
Sbjct: 372 RSETPGDEKKEESKEEAEKTEESKEGADDKKDENKPGEKVTIKGEKKILGKSKGFGFVCF 431
Query: 330 AERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKT--EGTFPYSPGLVPTHLPHAGYGG 387
+ A KAV + + I+G+ L V LA+ + +K E T L +
Sbjct: 432 SNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQARNQL---RMQQQQQQQ 488
Query: 388 FAGTPYGSVGTGFGVAAGFQQPMIY---GRG--PMPSGM 421
F G P + G QQPM++ GRG P P+GM
Sbjct: 489 FGGIPQMFIAPG-------QQPMMFPAGGRGQMPFPAGM 520
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 132/268 (49%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI+G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEINGKIIFVGRAQKKVERQAE 275
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 136/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N +++G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EINGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 136/277 (49%), Gaps = 23/277 (8%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
PN S +++G L +E L ++ IG V +R+ +D + S G+A+V++ + A++
Sbjct: 55 PNTS-LYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAVTRRSLGYAYVNYLNAADAER 113
Query: 164 AIDELHSKELKGKTIRC-------SLSET-KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A+++L+ +K K R SL +T + +FI KN E K + D
Sbjct: 114 ALEQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFI----KNLDETIDNKALHDTFAAFG 169
Query: 216 TIELIKDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
I K + + ++G+ FV Y A+ + K +N +L+ + P+ +
Sbjct: 170 DILSCKVAMDSTGASKGYGFVHYVTAESAE-AAIKGVN-GMQLNDKVVFVGIHVPRR--E 225
Query: 275 HSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHY 329
A +V+A LY+KN+P +TE++ E+F ++G VT + +SGK R FGF++Y
Sbjct: 226 RQAKIDEVRAHFTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADESGKHRGFGFVNY 285
Query: 330 AERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA KAV+ + G +L V A+ + ++ E
Sbjct: 286 ENHESASKAVEALHDKDYKGNILYVARAQKRVERDAE 322
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 92/359 (25%), Positives = 151/359 (42%), Gaps = 43/359 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + + L D GD+ ++ D +G SKG+ FV + + E A+ AI +
Sbjct: 147 IFIKNLDETIDNKALHDTFAAFGDILSCKVAMD-STGASKGYGFVHYVTAESAEAAIKGV 205
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ +L K + + + E + L+I N+P T +E ++ GP V
Sbjct: 206 NGMQLNDKVVFVGIHVPRRERQAKIDEVRAHFTNLYIKNLPTEVTTEELNEMFSKYGP-V 264
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ + D ++RGF FV Y N+ A + + + + ++K GN ++ A + D
Sbjct: 265 TSAAVQAD--ESGKHRGFGFVNYENHESASKAVEALHDKDYK--GNILYVARAQKRVERD 320
Query: 275 ------------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+ Q LY+KN+ D EK++ F G +T VM K
Sbjct: 321 AELRRAHEQQKYETTLKYQGVNLYIKNLDDEYDDEKLQAEFLPFGTITSCKVMKDDKGVS 380
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK--TEGTFPYSPGLVPTH 379
R FGF+ ++ A KAV + + + L V LA+ + +K E +
Sbjct: 381 RGFGFVCFSAPDEATKAVAEMNGKMLGSKPLYVSLAQRKDVRKQQLEAQMSQRAQMRSQQ 440
Query: 380 LPHAGYGGFAGTPYGSVGTG--FGVAAGFQQP---MIYGRGPMPSGMHMVPMVLPDGQI 433
+ A G G PYG+ +G AA + P M Y MP+GM P P GQ+
Sbjct: 441 IAAA---GIPGAPYGAPPNQMYYGGAAAYPPPGRGMAYPPNGMPAGMPPRPRYAPPGQM 496
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 91/194 (46%), Gaps = 31/194 (15%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
+++ A++ + + + ++I LP + + E+L ++ G V + D ESG+ +GF F
Sbjct: 224 RERQAKIDEVRAHFTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQAD-ESGKHRGFGF 282
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK------------------------NR 188
V++ + E A KA++ LH K+ KG + + ++ +
Sbjct: 283 VNYENHESASKAVEALHDKDYKGNILYVARAQKRVERDAELRRAHEQQKYETTLKYQGVN 342
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
L+I N+ + +++ + G + + +++KD + S RGF FV + + D + +
Sbjct: 343 LYIKNLDDEYDDEKLQAEFLPFG-TITSCKVMKDDKGVS--RGFGFVCF---SAPDEATK 396
Query: 249 KMLNANFKLDGNTP 262
+ N K+ G+ P
Sbjct: 397 AVAEMNGKMLGSKP 410
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L + +E L+ P G + ++MKD + G S+GF FV F + + A KA+
Sbjct: 340 GVNLYIKNLDDEYDDEKLQAEFLPFGTITSCKVMKD-DKGVSRGFGFVCFSAPDEATKAV 398
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ K L K + SL++ K+
Sbjct: 399 AEMNGKMLGSKPLYVSLAQRKD 420
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 133/266 (50%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN D+ E++KELF ++G+ V + SGK + FGF+ + + A KAV+
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHEDANKAVE 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ +I+G+++ V A+ + +++ E
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVERQAE 275
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 134/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ D + +++GF FV + + A+ + ++M + ++G + A K
Sbjct: 219 -SVKVMTD--SSGKSKGFGFVSFEKHEDANKAVEEMNGKD--INGKMVFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S + A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPDEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEITGKVIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EITGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 160/362 (44%), Gaps = 51/362 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G + ++ D SG+SKGF FV F ++E A KAI++L
Sbjct: 119 IFIKNLDKAIDHKALHDTFSAFGSILSCKVATD-SSGQSKGFGFVQFDTEEAALKAIEKL 177
Query: 169 HSKELKGKTI----------RCSLSE-TK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+ L K + R S+SE TK N +F+ N+ + +E++ + + + GP + +
Sbjct: 178 NGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGP-ITS 236
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS----- 271
+ +++D + S+ GF + + NA + LN K+DG + A KS
Sbjct: 237 VVVMRDGEGKSKCFGF---VNFENADDAARSVEALNGK-KVDGKEWYVGKAQKKSEREVE 292
Query: 272 -------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRD 323
+ +A Q LYVKN+ D+ +K+KELF G +T VM R
Sbjct: 293 LKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRG 352
Query: 324 FGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYS--------PGL 375
GF+ ++ A +A+ + I + L V LA+ + D++ +S +
Sbjct: 353 SGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSV 412
Query: 376 VPTHLPHAGYGG-------FAGTPYGSVGT---GFGVAAGFQQPMIYGRGPMPSGMHMVP 425
P +P GG F G ++ + GFG M G GPMP+ VP
Sbjct: 413 APRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPN--FFVP 470
Query: 426 MV 427
MV
Sbjct: 471 MV 472
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 161/378 (42%), Gaps = 51/378 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D G++ ++ D+ +G SKGF FV F S E A++AID +
Sbjct: 130 IFIKNLHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAI 189
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ + + L E K ++I N+ E EF + + V P V
Sbjct: 190 NGMLLNGQEVYVAPHVSRKDRQSKLEEAKANFTNVYIKNISLETPEQEFEEFFKKVAP-V 248
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++ L KD + + RGF FV Y +A A + +++ F G + A K
Sbjct: 249 TSVHLEKDSE--GKLRGFGFVNYETHAGAAKAVEELNGVEF--HGQQLHVGRAQKKYERQ 304
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ Q L++KN+ D+ E+++E F G +T V + ++GK
Sbjct: 305 QELRRQYEQSKLEKMEKYQGVNLFIKNLDDSIDDERLREEFSPFGTITSVKVMTTENGKS 364
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++ + +
Sbjct: 365 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ---------LAQQIQ 415
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPD-GQIGYVLQQP 440
+ + G+ F PM YG P P G VP P+ Q+ + P
Sbjct: 416 ARNQMRYQQVTAAAAAAAAGMRGQFMPPMFYGVMP-PRG---VPFNGPNPQQLAAMGGMP 471
Query: 441 GVQMPPPRPRRVDRSNGP 458
MPP + R NGP
Sbjct: 472 KNGMPPQQFR-----NGP 484
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 134/273 (49%), Gaps = 19/273 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E ++AI+
Sbjct: 40 ASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAGRQAIE 99
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIED---VGPGVETIEL 219
+L+ +KG+ R S+ L GN+ KN D K + D V + + ++
Sbjct: 100 KLNYTPIKGQPCRIMWSQRDPSLRKKGSGNIFIKNLHADIDNKALHDTFSVFGNILSCKI 159
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGN----TPTISWADPKSTPD 274
D + ++GF FV + ++ A R+ + N L+G P +S D +S +
Sbjct: 160 ATD-EVTGNSKGFGFVHFESDEAA---REAIDAINGMLLNGQEVYVAPHVSRKDRQSKLE 215
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
A + +Y+KNI T ++ +E F++ VT V + GK R FGF++Y +
Sbjct: 216 E--AKANFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSEGKLRGFGFVNYETHA 273
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A KAV++ E GQ L V A+ + +++ E
Sbjct: 274 GAAKAVEELNGVEFHGQQLHVGRAQKKYERQQE 306
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L +E LR+ P G + V++M E+G+SKGF FV F + E A KAI
Sbjct: 324 GVNLFIKNLDDSIDDERLREEFSPFGTITSVKVMTT-ENGKSKGFGFVCFSTPEEATKAI 382
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 383 TEKNQQIVAGKPLYVAIAQRKD 404
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 129/270 (47%), Gaps = 16/270 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L + ++ L DL +G V VR+ +D +G S G+ +V++ +++ A +AID
Sbjct: 40 TSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAID 99
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L+ L KTIR S+S +FI N+ K+ + G TI
Sbjct: 100 VLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFG----TII 155
Query: 219 LIKDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
K + S +++G+ FV Y + A + K LN D + K D
Sbjct: 156 SCKIATDASGQSKGYGFVQYDSEEAAQTAIDK-LNGMLMNDKQV-YVGVFLRKQDRDSEM 213
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
+ ++ +YVKN+ D+TS + +++ F +G +T VV+ GK + FGF+++ A
Sbjct: 214 SKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAA 273
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
KAV + D + V A+ +++++ E
Sbjct: 274 KAVDALNGKKFDDKEWYVGKAQKKSEREVE 303
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 93/363 (25%), Positives = 156/363 (42%), Gaps = 54/363 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L + G + ++ D SG+SKG+ FV + S+E A+ AID+L
Sbjct: 130 IFIKNLDKSIDIKALHETFSSFGTIISCKIATD-ASGQSKGYGFVQYDSEEAAQTAIDKL 188
Query: 169 HSKELKGKTIRCS-----------LSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+ + K + +S+TK N +++ N+ + +ED+ RK + G + +
Sbjct: 189 NGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGT-ITS 247
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS----- 271
+ +++D +++ F FV + N A + LN K D + A KS
Sbjct: 248 VVVMRDADG--KSKCFGFVNFENPEDAAKAVDA-LNGK-KFDDKEWYVGKAQKKSEREVE 303
Query: 272 -------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRD 323
T Q LYVKN+ D EK+KELF +G +T + SG R
Sbjct: 304 LKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRG 363
Query: 324 FGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYS---PGLVPTHL 380
GF+ ++ A +A+ + I + L V LA+ + +++ +S P +P +
Sbjct: 364 SGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSM 423
Query: 381 -----------PHAGYGGFAG-TPYGSVGTGFGVAAGFQQPMIYGR----GPMPSGMHMV 424
P G F G P + G G+QQ ++ G GPMP+ +
Sbjct: 424 GPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGF--GYQQQLVPGMRPGGGPMPN--FFM 479
Query: 425 PMV 427
PMV
Sbjct: 480 PMV 482
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 138/273 (50%), Gaps = 21/273 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 128 TMNFDMIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 186
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q ++G++FV + N + AD + ++M N KL K+ D A
Sbjct: 187 VMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGKLLKGCKVFV-GRFKNRKDREAE 239
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ +
Sbjct: 240 LRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 299
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A KAV++ +I+GQ++ V A+ + +++ E
Sbjct: 300 AAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 332
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 122/277 (44%), Gaps = 35/277 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 215
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LKG + R SE N ++I N + ++ + V G
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-IYIKNFGGDMDDERLKDVFSKYGKT 274
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--S 271
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 275 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 329
Query: 272 TPDHSAAASQVK----------ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
+ Q+K LY+KN+ D EK++ F G +++V + +
Sbjct: 330 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 389
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
+ FG I ++ A KA+ + + + L + LA+
Sbjct: 390 KGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + ++I D +E L+D+ G V++M D SG+SKG
Sbjct: 231 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 289
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 349
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ R G +I +K Q +++GF + +
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 397
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 133/272 (48%), Gaps = 14/272 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S E +KA
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 165 IDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
++EL+ +KGK R S+ + GNV KN K + D I
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 165
Query: 221 KDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K Q+ N +G+ FV +Y A A + K +N L+ + PK + +
Sbjct: 166 KVAQDELGNSKGYGFV-HYETAEAANNAIKHVNGML-LNEKKVFVGHHIPKK--ERMSKF 221
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
++KA +YVKNI + S E+ +ELF++HG++T + + GK R FGF++Y + +
Sbjct: 222 EEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEA 281
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A AV + GQ L V A+ + +++ E
Sbjct: 282 ASAAVDALNDTDFRGQKLYVGRAQKKHEREEE 313
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 91/399 (22%), Positives = 156/399 (39%), Gaps = 102/399 (25%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 169 HSKELKGKTI----------RCS----LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + R S + +++ N+ + +++EFR++ E G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHG-DI 255
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ + +D Q ++RGF FV Y + A + + + +F+ G + A K +
Sbjct: 256 TSASIARDEQ--GKSRGFGFVNYIKHEAASAAVDALNDTDFR--GQKLYVGRAQKKHERE 311
Query: 275 ------HSAAASQVKA------LYVKNIPDNTSTEKIKELFQRHGEVTKV-----VMPP- 316
+ AA + ++ LY+KN+ D+ EK++++F G +T MP
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAE 371
Query: 317 -------------------------GKSGKRD----------------------FGFIHY 329
G K+D FGF+ +
Sbjct: 372 RSETPGDEKKEEAKEESEKTEESNEGADDKKDENKPGEKVTIKGEKKILGKSKGFGFVCF 431
Query: 330 AERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKT--EGTFPYSPGLVPTHLPHAGYGG 387
+ A KAV + + I+G+ L V LA+ + +K E T L +
Sbjct: 432 SNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQARNQL---RMQQQQQQQ 488
Query: 388 FAGTPYGSVGTGFGVAAGFQQPMIY---GRG--PMPSGM 421
F G P + G QQPM++ GRG P P+GM
Sbjct: 489 FGGIPQMFIAPG-------QQPMMFPAGGRGQMPFPAGM 520
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 93/393 (23%), Positives = 167/393 (42%), Gaps = 67/393 (17%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPTG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAA-GFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQ 439
G P ++ F AA G+ P + GP + + + D Q L
Sbjct: 387 -----AGMRALPANAILNQFQPAAGGYFVPAVPQPGPWSASL------VSDEQ---CLSP 432
Query: 440 PGVQ-MPP------PRP---RRVDRSNGPGGRG 462
PG Q MP PRP N P RG
Sbjct: 433 PGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRG 465
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PTGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 147/305 (48%), Gaps = 28/305 (9%)
Query: 79 EEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL 138
E++++P A+ E ++ + N + +++G L +E L ++ PIG V +R+
Sbjct: 21 EQQQQPVAATTEQSAEEQGDSSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRV 80
Query: 139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET--------KNRLF 190
+D S +S G+A+V++ E +KAI+EL+ ++G+ R S+ +F
Sbjct: 81 CRDAVSKKSLGYAYVNYHKFEDGEKAIEELNYTPIEGRPCRIMWSQRDPSARRSGDGNIF 140
Query: 191 IGN----VPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
I N + D F + + V T EL +++ F FV Y A+ +
Sbjct: 141 IKNLHPAIDNKALHDTFSAFGKILSCKVATDEL-------GQSKCFGFVHY---ETAEAA 190
Query: 247 RQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEKIKEL 302
+ N N L N + S D + ++KA +YVKNI + E+ ++L
Sbjct: 191 EAAIENVNGMLL-NDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLAYTEEEFEKL 249
Query: 303 FQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361
F +G++T + + + GK + FGF+++ E +A+KAV++ EI+GQ + V A+ +
Sbjct: 250 FAPYGKITSIYLEKDQDGKSKGFGFVNFEEHDAAVKAVEELNDKEINGQKIYVGRAQKKR 309
Query: 362 DKKTE 366
++ E
Sbjct: 310 ERMEE 314
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 130/285 (45%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D E G+SK F FV + + E A+ AI+ +
Sbjct: 139 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-ELGQSKCFGFVHYETAEAAEAAIENV 197
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK I E+K +++ N+ +TE+EF K+ G +
Sbjct: 198 NGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLAYTEEEFEKLFAPYGK-I 256
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD +++GF FV + + A + +++ + +++G + A K
Sbjct: 257 TSIYLEKD--QDGKSKGFGFVNFEEHDAAVKAVEELNDK--EINGQKIYVGRAQKKRERM 312
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ A Q L+VKN+ D+ +EK++E F+ G +T + +GK
Sbjct: 313 EELKKQYEAIRLEKLAKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSAKVMVDDAGKS 372
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ + A KA+ + + ++ + L V LA+ + ++++
Sbjct: 373 KGFGFVCFTTPEEATKAITEMNQRMVNNKPLYVALAQRKDVRRSQ 417
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L E L + +P G + ++M D ++G+SKGF FV F + E A KAI
Sbjct: 332 GVNLFVKNLDDSIDSEKLEEEFKPFGTITSAKVMVD-DAGKSKGFGFVCFTTPEEATKAI 390
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + + K + +L++ K+
Sbjct: 391 TEMNQRMVNNKPLYVALAQRKD 412
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 135/268 (50%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ E++KELF ++G+ V VM P GKS + FGF+ + + A KA
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKS--KGFGFVSFEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ +I+G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKDINGKMVFVGRAQKKVERQAE 275
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 143/325 (44%), Gaps = 47/325 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ DP +++GF FV + + A+ + ++M + ++G + A K
Sbjct: 219 -SVKVMTDPTG--KSKGFGFVSFEKHEDANKAVEEMNGKD--INGKMVFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAG 405
G P ++ F AAG
Sbjct: 387 -----AGMRALPANTIINQFQPAAG 406
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEITGKVIFVGRAQKKVERQAE 275
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EITGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 137/273 (50%), Gaps = 21/273 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 287 ASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQKALD 346
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ ++GK+IR S+ L FI N+ K+ + G + + +
Sbjct: 347 TMNFDVIQGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGR-ILSSK 405
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q ++G++FV + N + AD + ++M N KL KS D A
Sbjct: 406 VMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGKLLQGCKVFV-GRFKSRQDREAE 458
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ +
Sbjct: 459 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 518
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A KAV++ +I+GQ++ V A+ + +++ E
Sbjct: 519 AAKKAVEEMNGRDINGQLIFVARAQKKVERQAE 551
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 124/277 (44%), Gaps = 35/277 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 377 VFIKNLDKSIDNKTLYEHFSAFGRILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 434
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K L+G + R SE N ++I N + ++ + V G
Sbjct: 435 NGKLLQGCKVFVGRFKSRQDREAELRSKASEFTN-VYIKNFGGDMDDERLKDVFSKYGKT 493
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--- 270
+ +++++ D S+ GF FV + ++ A + ++M + ++G ++ A K
Sbjct: 494 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVARAQKKVER 548
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
+ QV LYVKN+ D EK+++ F G +++V + +
Sbjct: 549 QAELKQMFEQLKNERIRGCQVVKLYVKNLDDTIDDEKLRKEFSSFGSISRVKVMQEEGQS 608
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
+ FG I ++ ALKA+ + + + L + LA+
Sbjct: 609 KGFGLICFSSPEDALKAMTEMNGRILGSKPLSIALAQ 645
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 135/268 (50%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ E++KELF ++G+ V VM P GKS + FGF+ + + A KA
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKS--KGFGFVSFEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ +I+G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKDINGKMVFVGRAQKKVERQAE 275
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 142/325 (43%), Gaps = 47/325 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ DP S+ GF FV + + A+ + ++M + ++G + A K
Sbjct: 219 -SVKVMTDPTGKSK--GFGFVSFEKHEDANKAVEEMNGKD--INGKMVFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGAITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAG 405
G P ++ F AAG
Sbjct: 387 -----AGMRALPANTIINQFQPAAG 406
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGAITSAKVM--LEDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 132/268 (49%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI+G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEINGKIIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 145/325 (44%), Gaps = 47/325 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N +++G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EINGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAG 405
G P ++ F AAG
Sbjct: 387 -----AGMRALPANAILNQFQPAAG 406
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 135/268 (50%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ E++KELF ++G+ V VM P GKS + FGF+ + + A KA
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKS--KGFGFVSFEKHEEANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ +I+G++L V A+ + +++ E
Sbjct: 248 VEEMNGKDINGKMLFVGRAQKKAERQAE 275
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 143/325 (44%), Gaps = 47/325 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+++++ DP S+ GF FV + + A+ + ++M + ++G + A K+
Sbjct: 219 -SVKVMTDPTGKSK--GFGFVSFEKHEEANKAVEEMNGKD--INGKMLFVGRAQKKAERQ 273
Query: 272 ---------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRRFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAG 405
G P ++ F AAG
Sbjct: 387 -----AGMRALPANTIINQFQPAAG 406
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEITGKVIFVGRAQKKVERQAE 275
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EITGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 133/268 (49%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F A++A+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ E++KE+F ++G+ V VM P GKS R FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKS--RGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ E++G+ + V A+ + +++ E
Sbjct: 248 VEEMNGTELNGKTVFVGRAQKKMERQAE 275
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 146/331 (44%), Gaps = 47/331 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ + G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEIFDKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ DP SR GF FV Y + A+ + ++M +L+G T + A K
Sbjct: 219 -SVKVMTDPSGKSR--GFGFVSYEKHEDANKAVEEMNGT--ELNGKTVFVGRAQKKMERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAGFQQPMI 411
G P ++ F +G+ P +
Sbjct: 387 -----AGMRAMPANAIINQFQPTSGYFMPAV 412
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEEGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 134/274 (48%), Gaps = 14/274 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 56 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGE 115
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ + GNV KN K + D I
Sbjct: 116 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 175
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
K Q+ + N +G+ FV Y + A + K +N L+ + PK D +
Sbjct: 176 SCKVAQDENGNSKGYGFVHYETDEAA-HQAIKHVNGML-LNEKKVYVGHHIPKK--DRQS 231
Query: 278 AASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
++KA +YVKNI S ++ +ELF+++G++T + + GK R FGF+++
Sbjct: 232 KFEEMKANFTNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTH 291
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA KAV++ + GQ L V A+ + +++ E
Sbjct: 292 ESAAKAVEELHGKDFRGQDLYVGRAQKKHEREEE 325
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 83/155 (53%), Gaps = 26/155 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + +AS+++ R+L E GD+ L +D+E G+S+GF
Sbjct: 226 KKDRQSKFEEMKANFTNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQE-GKSRGFG 284
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV+F + E A KA++ELH K+ +G+ + ++ K+
Sbjct: 285 FVNFTTHESAAKAVEELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGV 344
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+I N+ + +++ R++ + GP + + ++++D
Sbjct: 345 NLYIKNLDDDVDDEKLRQMFAEFGP-ITSAKVMRD 378
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 133/291 (45%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP S+ GF FV Y + A+ + ++M ++ G + A K
Sbjct: 219 -SVKVMRDPSGKSK--GFGFVSYEKHEDANKAVEEMNGK--EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 144/325 (44%), Gaps = 47/325 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAG 405
G P ++ F AAG
Sbjct: 387 -----AGMRALPANAILNQFQPAAG 406
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 144/325 (44%), Gaps = 47/325 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAG 405
G P ++ F AAG
Sbjct: 387 -----AGMRALPANAILNQFQPAAG 406
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 136/273 (49%), Gaps = 21/273 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D + S G+A+V+F A+KA+D
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 70 TMNFDTIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-K 128
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q RG++FV + N AD + ++M A K + K+ D A
Sbjct: 129 VMSDDQGS---RGYAFVHFQNQMAADRAIEEMNGALLK----DCRLFVGRFKNRQDREAE 181
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
A++ +Y+KN D+ ++++E+F ++G+ V + +GK + FGF+ +
Sbjct: 182 LQNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKGFGFVSFYSHE 241
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A KAV++ +I+GQ+L V A+ + +++ E
Sbjct: 242 AAQKAVEEMNGKDINGQLLFVGRAQKKAERQAE 274
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 131/305 (42%), Gaps = 49/305 (16%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + S+G+AFV F+++ A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SRGYAFVHFQNQMAADRAIEEM 157
Query: 169 HSKELKGKTIRCSLSETKNR----------------LFIGNVPKNWTEDEFRKVIEDVGP 212
+ LK R + KNR ++I N + + +V G
Sbjct: 158 NGALLKD--CRLFVGRFKNRQDREAELQNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGK 215
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
V +++++ D S+ GF FV +Y++ A + ++M + ++G + A K+
Sbjct: 216 TV-SVKVMTDSTGKSK--GFGFVSFYSHEAAQKAVEEMNGKD--INGQLLFVGRAQKKA- 269
Query: 273 PDHSAAASQV--------------KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK 318
+ A Q+ LY+KN+ D EK++ F G +++V + +
Sbjct: 270 -ERQAELKQMFEQQKQERFRRCQGVKLYIKNLDDTIDDEKLRREFSSFGSISRVKVMKEE 328
Query: 319 SGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLE---VVLAKPQTDKKTEGTFPYSPGL 375
+ FG I ++ A +A+ E++G++L + +A Q+ ++ G S
Sbjct: 329 GRSKGFGLICFSSPEEATRAMT-----EMNGRILGSKPLNIALAQSLQQVXGMLVISAXT 383
Query: 376 VPTHL 380
V +
Sbjct: 384 VLSEF 388
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++I L +E LR G + V++MK E G SKGF + F S E A +A+
Sbjct: 292 GVKLYIKNLDDTIDDEKLRREFSSFGSISRVKVMK--EEGRSKGFGLICFSSPEEATRAM 349
Query: 166 DELHSKELKGKTIRCSLSET 185
E++ + L K + +L+++
Sbjct: 350 TEMNGRILGSKPLNIALAQS 369
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 135/268 (50%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ E++KELF ++G+ V VM P GKS + FGF+ + + A +A
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKS--KGFGFVSFEKHEDANQA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V+D +I+G+++ V A+ + +++ E
Sbjct: 248 VEDMNGKDINGKMVFVGRAQKKVERQAE 275
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 142/325 (43%), Gaps = 47/325 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ DP +++GF FV + + A+ + + M + ++G + A K
Sbjct: 219 -SVKVMTDPSG--KSKGFGFVSFEKHEDANQAVEDMNGKD--INGKMVFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAG 405
G P ++ F AAG
Sbjct: 387 -----AGMRALPANTIINQFQPAAG 406
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEEGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 152/325 (46%), Gaps = 24/325 (7%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGL 114
S A A++ +S E D +E + + GED D LP + +++G L
Sbjct: 2 SAAEANQVQESLEKLNLDSAPVATQETNVSSGNEGEDAADSSQ----LPDTSASLYVGEL 57
Query: 115 PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174
+E L ++ P+G V +R+ +D + +S G+A+V+F E +KAI+EL+ +
Sbjct: 58 NPSVNEALLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIEELNYSLID 117
Query: 175 GKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
G+ R S+ + +FI N+ G + + ++ D Q
Sbjct: 118 GRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGK-ILSCKVATDEQGN 176
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA-- 284
S + F FV Y A+ ++ + N N L N + S D + ++KA
Sbjct: 177 S--KCFGFVHY---ETAEAAKAAIENVNGMLL-NDREVYVGKHVSKKDRESKFEEMKANF 230
Query: 285 --LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKD 341
+YVKNI S E++++LF+ +G++T + + GK + FGF+++ +A+KAV++
Sbjct: 231 TNVYVKNIDLGFSEEEMRKLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEE 290
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+I+GQ L V A+ + ++ E
Sbjct: 291 LNDKDINGQKLYVGRAQKKRERIEE 315
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 87/370 (23%), Positives = 158/370 (42%), Gaps = 54/370 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D E G SK F FV + + E AK AI+ +
Sbjct: 140 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EQGNSKCFGFVHYETAEAAKAAIENV 198
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK + E+K +++ N+ ++E+E RK+ E G +
Sbjct: 199 NGMLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRKLFEPYGK-I 257
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++ L KD + S+ GF FV + ++ A + +++ + + ++G + A K
Sbjct: 258 TSLHLEKDAEGKSK--GFGFVNFESHEAAVKAVEELNDKD--INGQKLYVGRAQKKRERI 313
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ + Q L+VKN+ D+ + K++E F+ G +T + + GK
Sbjct: 314 EELKRQYEAARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKS 373
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ FGF+ ++ A KA+ + + G+ L V LA+ + ++++ L
Sbjct: 374 KGFGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQRKDVRRSQ-------------LE 420
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPM---PSGMHMVPMVLPDGQIGYVLQ 438
+ TG G+ F PM YG+ P P+G P P+ Q +
Sbjct: 421 QQIQARNQMRMQNAAATG-GIPGQFIPPMFYGQQPGFFPPNGRGSAPFPGPNPQ----MM 475
Query: 439 QPGVQMPPPR 448
P Q+PPP+
Sbjct: 476 VPRGQIPPPQ 485
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L L + +P G + R+M D E G+SKGF FV F S E A KAI
Sbjct: 333 GVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVD-EHGKSKGFGFVCFSSPEEATKAI 391
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + GK + +L++ K+
Sbjct: 392 TEMNQRMFHGKPLYVALAQRKD 413
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 144/325 (44%), Gaps = 47/325 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAG 405
G P ++ F AAG
Sbjct: 387 -----AGMRALPANAILNQFQPAAG 406
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 144/325 (44%), Gaps = 47/325 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAG 405
G P ++ F AAG
Sbjct: 387 -----AGMRALPANAILNQFQPAAG 406
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEITGKVIFVGRAQKKVERQAE 275
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 144/325 (44%), Gaps = 47/325 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EITGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAG 405
G P ++ F AAG
Sbjct: 387 -----AGMRALPANAILNQFQPAAG 406
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 132/268 (49%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI+G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEINGKIIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 144/325 (44%), Gaps = 47/325 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP S+ GF FV Y + A+ + ++M N +++G + A K
Sbjct: 219 -SVKVMRDPSGKSK--GFGFVSYEKHEDANKAVEEM-NGK-EINGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAG 405
G P ++ F AAG
Sbjct: 387 -----AGMRALPANAILNQFQPAAG 406
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 143/287 (49%), Gaps = 22/287 (7%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
KDK + A S +++G L D +E+ L +G V +R+ +D+ + S G+A+
Sbjct: 54 KDKEMNVAAKYRMAS-LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAY 112
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFR 204
V+F A+KA+D ++ +KGK+IR S+ L FI N+ K+
Sbjct: 113 VNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLY 172
Query: 205 KVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264
+ G + + +++ D Q ++G++FV + N + AD + ++M N KL
Sbjct: 173 EHFSAFGK-ILSSKVMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGKLLKGCKVF 225
Query: 265 SWADPKSTPDHSA----AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
K+ D A AS+ +Y+KN + E++K++F ++G+ V + SG
Sbjct: 226 V-GRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSG 284
Query: 321 K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
K + FGF+ + +A KAV++ +I+GQ++ V A+ + +++ E
Sbjct: 285 KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 331
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 122/277 (44%), Gaps = 35/277 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 157 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 214
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LKG + R SE N ++I N + ++ + V G
Sbjct: 215 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-IYIKNFGGDMDDERLKDVFSKYGKT 273
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--S 271
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 274 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 328
Query: 272 TPDHSAAASQVK----------ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
+ Q+K LY+KN+ D EK++ F G +++V + +
Sbjct: 329 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 388
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
+ FG I ++ A KA+ + + + L + LA+
Sbjct: 389 KGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 425
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + ++I D +E L+D+ G V++M D SG+SKG
Sbjct: 230 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 288
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 289 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 348
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ R G +I +K Q +++GF + +
Sbjct: 349 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 396
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 132/268 (49%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI+G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEINGKVIFVGRAQKKVERQAE 275
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP S+ GF FV Y + A+ + ++M N +++G + A K
Sbjct: 219 -SVKVMRDPSGKSK--GFGFVSYEKHEDANKAVEEM-NGK-EINGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEINGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|148709768|gb|EDL41714.1| mCG1979, isoform CRA_b [Mus musculus]
Length = 767
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 9/187 (4%)
Query: 175 GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
G+ + S RLF+G +PK +E ++ V GV + + + ++NRGF+F
Sbjct: 296 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAF 355
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNT 294
V Y ++ A +R+++L +L G+ + WA+P+ D +S VK LYV+N+ +T
Sbjct: 356 VEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VKILYVRNLMLST 414
Query: 295 STEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352
S E I++ F + G V +V RD+ F+H++ R A++A+K +DG +
Sbjct: 415 SEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPI 468
Query: 353 EVVLAKP 359
EV LAKP
Sbjct: 469 EVTLAKP 475
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+RLM D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDF-NGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK 174
AI +L++ E++
Sbjct: 111 NAIKQLNNYEIR 122
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 137/273 (50%), Gaps = 21/273 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQKALD 69
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-K 128
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q +G++FV + N + AD + ++M N KL KS D A
Sbjct: 129 VMSDDQGS---KGYAFVHFQNQSAADRAIEEM---NGKLLQGCKVFV-GRFKSRKDREAE 181
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ +
Sbjct: 182 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 241
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A KAV++ +I+GQ++ V A+ + +++ E
Sbjct: 242 AAKKAVEEMNGRDINGQLIFVARAQKKVERQAE 274
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 121/271 (44%), Gaps = 40/271 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K L+G + R SE N ++I N + ++ + V G
Sbjct: 158 NGKLLQGCKVFVGRFKSRKDREAELRSKASEFTN-VYIKNFGGDMDDERLKDVFSKYGKT 216
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--- 270
+ +++++ D S+ GF FV + ++ A + ++M + ++G ++ A K
Sbjct: 217 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVARAQKKVER 271
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
QV LYVKN+ D EK++ F G +++V + +
Sbjct: 272 QAELKQMFEQLKKERIRGCQVVKLYVKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 331
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352
+ FG I ++ ALKA+ E++G++L
Sbjct: 332 KGFGLICFSSPEDALKAMT-----EMNGRIL 357
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
KD+ A+L + + V+I D +E L+D+ G V++M D SG+SKGF F
Sbjct: 176 KDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGF 234
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
VSF S E AKKA++E++ +++ G+ I + ++ K
Sbjct: 235 VSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKK 268
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 138/272 (50%), Gaps = 19/272 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D + S G+A+V+F A+KA+D
Sbjct: 10 ASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ ++ + G + + +
Sbjct: 70 TMNFDMIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSS-K 128
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSA 277
++ D Q +G++FV + N + AD + ++M N D + + K +
Sbjct: 129 VMSDDQGS---KGYAFVHFQNQSAADRAIEEM-NGKLLKDCKVFVGRFKNRKDREAELRN 184
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSS 334
AS+ +Y+KN D+ E+++E+F ++G+ V VM P GKS + FGF+ + +
Sbjct: 185 KASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKS--KGFGFVSFDNHEA 242
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A KAV++ +I+GQ++ V A+ + +++ E
Sbjct: 243 AQKAVEEMNGKDINGQLIFVGRAQKKVERQAE 274
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 122/273 (44%), Gaps = 44/273 (16%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 100 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LK + R SE N ++I N + ++ R+V G
Sbjct: 158 NGKLLKDCKVFVGRFKNRKDREAELRNKASEFTN-VYIKNFGDDMDDERLREVFSKYGKT 216
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP 273
+ +++++ DP S+ GF FV + N+ A + ++M N K D N I +
Sbjct: 217 L-SVKVMTDPSGKSK--GFGFVSFDNHEAAQKAVEEM---NGK-DINGQLIFVGRAQKKV 269
Query: 274 DHSAAASQV--------------KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS 319
+ A Q+ LY+KN+ D EK+++ F G +++V + +
Sbjct: 270 ERQAELKQMFEQQKRERIRKCQGVKLYIKNLDDTIDDEKLRKEFSSFGSISRVKVMQEEG 329
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352
+ FG I ++ A KA+ E++GQ+L
Sbjct: 330 QSKGFGLICFSSPEEATKAMT-----EMNGQIL 357
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + V+I D +E LR++ G V++M D SG+SKG
Sbjct: 173 KNRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTD-PSGKSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF + E A+KA++E++ K++ G+ I ++ K
Sbjct: 232 FGFVSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQKRERIRKCQ 291
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ RK G +I +K Q +++GF + +
Sbjct: 292 GVKLYIKNLDDTIDDEKLRKEFSSFG----SISRVKVMQEEGQSKGFGLICF 339
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++I L +E LR G + V++M+ E G+SKGF + F S E A KA+
Sbjct: 292 GVKLYIKNLDDTIDDEKLRKEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEEATKAM 349
Query: 166 DELHSKELKGKTIRCSLSE 184
E++ + L K + +LS+
Sbjct: 350 TEMNGQILGSKPLNIALSQ 368
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 134/274 (48%), Gaps = 14/274 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 57 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGE 116
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ + GNV KN K + D I
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 176
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
K Q+ + N +G+ FV Y + A + K +N L+ + PK D +
Sbjct: 177 SCKVAQDENGNSKGYGFVHYETDEAA-HQAIKHVNGML-LNEKKVYVGHHIPKK--DRQS 232
Query: 278 AASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
++KA +Y+KNI S ++ +ELF+++G++T + + GK R FGF+++
Sbjct: 233 KFEEMKANFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTH 292
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA KAV++ + GQ L V A+ + +++ E
Sbjct: 293 ESAAKAVEELHGKDFRGQDLYVGRAQKKHEREEE 326
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 83/155 (53%), Gaps = 26/155 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + ++I + +AS+++ R+L E GD+ L +D+E G+S+GF
Sbjct: 227 KKDRQSKFEEMKANFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQE-GKSRGFG 285
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV+F + E A KA++ELH K+ +G+ + ++ K+
Sbjct: 286 FVNFTTHESAAKAVEELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGV 345
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+I N+ + +++ R++ + GP + + ++++D
Sbjct: 346 NLYIKNLDDDVDDEKLRQMFAEFGP-ITSAKVMRD 379
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 136/275 (49%), Gaps = 16/275 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 51 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGE 110
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ + GNV KN K + D I
Sbjct: 111 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 170
Query: 219 LIKDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHS 276
K Q+ + ++G+ FV Y + A +Q + + N L+ + PK D
Sbjct: 171 SCKVAQDENGSSKGYGFVHYETDEAA---QQAIKHVNGMLLNEKKVYVGHHIPKK--DRQ 225
Query: 277 AAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
+ ++KA +YVKNI + ++ +ELF+RHG+VT + + GK R FGF+++
Sbjct: 226 SKFEEMKANFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRGFGFVNFTT 285
Query: 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A KAV++ ++ GQ L V A+ + +++ E
Sbjct: 286 HEAAAKAVEELNNKDLHGQELYVGRAQKKHEREEE 320
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 143/287 (49%), Gaps = 22/287 (7%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
KDK + A S +++G L D +E+ L +G V +R+ +D+ + S G+A+
Sbjct: 55 KDKEMNVAAKYRMAS-LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAY 113
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFR 204
V+F A+KA+D ++ +KGK+IR S+ L FI N+ K+
Sbjct: 114 VNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLY 173
Query: 205 KVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264
+ G + + +++ D Q ++G++FV + N + AD + ++M N KL
Sbjct: 174 EHFSAFGK-ILSSKVMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGKLLKGCKVF 226
Query: 265 SWADPKSTPDHSA----AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
K+ D A AS+ +Y+KN + E++K++F ++G+ V + SG
Sbjct: 227 V-GRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSG 285
Query: 321 K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
K + FGF+ + +A KAV++ +I+GQ++ V A+ + +++ E
Sbjct: 286 KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 332
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 122/277 (44%), Gaps = 35/277 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 215
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LKG + R SE N ++I N + ++ + V G
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-IYIKNFGGDMDDERLKDVFSKYGKT 274
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--S 271
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 275 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 329
Query: 272 TPDHSAAASQVK----------ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
+ Q+K LY+KN+ D EK++ F G +++V + +
Sbjct: 330 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 389
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
+ FG I ++ A KA+ + + + L + LA+
Sbjct: 390 KGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + ++I D +E L+D+ G V++M D SG+SKG
Sbjct: 231 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 289
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 349
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ R G +I +K Q +++GF + +
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 397
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 135/269 (50%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L + +E L ++ +G V +R+ +D + S G+A+V+F + E +++A++
Sbjct: 80 TSLYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSERALE 139
Query: 167 ELHSKELKGKTIRCSLSET---KNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
+L+ ++G+ R S+ + R GN+ KN E K + D I K
Sbjct: 140 QLNYTPIRGRPCRIMWSQRDPGQRRAGQGNIFIKNLDEAIDNKALHDTFAAFGKILSCKV 199
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
N + G+ FV Y +N A+ + K +N N + S D A +
Sbjct: 200 ASNEHGSLGYGFVHYESNDAAE-AAIKHVNGMLL---NDKKVYVGHHISKKDRQAKIEEA 255
Query: 283 KA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
+A +YVKN+ + E+ ++LF+++G++T + + GK R FGF++++E A K
Sbjct: 256 RAHYTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKSRGFGFVNFSEHEQAAK 315
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV++ E GQ L + A+ +++++ E
Sbjct: 316 AVEELNDTEFHGQKLFLGRAQKKSEREEE 344
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 117/277 (42%), Gaps = 34/277 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + + L D G + ++ ++ S G+ FV + S + A+ AI +
Sbjct: 170 IFIKNLDEAIDNKALHDTFAAFGKILSCKVASNEHG--SLGYGFVHYESNDAAEAAIKHV 227
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + + E + +++ N+ T++EF K+ E G +
Sbjct: 228 NGMLLNDKKVYVGHHISKKDRQAKIEEARAHYTNVYVKNLDPAVTQEEFEKLFEKYG-KI 286
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+ + D + ++RGF FV + + A + +++ + F G + A KS
Sbjct: 287 TSAAIATDQEG--KSRGFGFVNFSEHEQAAKAVEELNDTEF--HGQKLFLGRAQKKSERE 342
Query: 272 ---------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+ + Q LY+KN+P++ E+++E F G T VM
Sbjct: 343 EELRRAYEAAKNEKLSKYQGVNLYIKNLPEDFDDERLQEEFAPFGTTTSAKVMRTPTGAS 402
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
R FGF+ Y+ A KAV + I+ + L V LA+
Sbjct: 403 RGFGFVCYSAPEEANKAVAEMNGKMIENRPLYVALAQ 439
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I LP+D +E L++ P G ++M+ +G S+GF FV + + E A KA+
Sbjct: 362 GVNLYIKNLPEDFDDERLQEEFAPFGTTTSAKVMRTP-TGASRGFGFVCYSAPEEANKAV 420
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ K ++ + + +L++ K+
Sbjct: 421 AEMNGKMIENRPLYVALAQRKD 442
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 130/272 (47%), Gaps = 14/272 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S E +KA
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 165 IDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
++EL+ +KGK R S+ + GNV KN K + D I
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 165
Query: 221 KDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K Q+ N +G+ FV +Y A A + K +N L+ + PK + +
Sbjct: 166 KVAQDELGNSKGYGFV-HYETAEAANNAIKHVNGML-LNEKKVFVGHHIPKK--ERMSKF 221
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
++KA +YVKNI + + E +ELF++HG++T + GK R FGF++Y +
Sbjct: 222 EEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEA 281
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A AV E GQ L V A+ + +++ E
Sbjct: 282 AAVAVDHLNDIEFKGQKLYVGRAQKKHEREEE 313
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+K++ ++ + N + +++ + D ++ED R+L E GD+ + +D + G+S+GF
Sbjct: 214 KKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARD-DQGKSRGFG 272
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIE 208
FV++ E A A+D L+ E KG+ +L++G K+ E+E RK E
Sbjct: 273 FVNYIRHEAAAVAVDHLNDIEFKGQ-----------KLYVGRAQKKHEREEELRKQYE 319
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
G+SKGF FV F + + A KA+ E++ K ++GK + +L++ K+
Sbjct: 422 GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKD 464
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 144/325 (44%), Gaps = 47/325 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAG 405
G P ++ F AAG
Sbjct: 387 -----AGMRALPANAILNQFQPAAG 406
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 134/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP S+ GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPNGKSK--GFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 144/325 (44%), Gaps = 47/325 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAG 405
G P ++ F AAG
Sbjct: 387 -----AGMRALPANAILNQFQPAAG 406
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 134/273 (49%), Gaps = 21/273 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D + S G+A+V+F A+KA+D
Sbjct: 10 ASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK IR S+ L FI N+ K+ + G + + +
Sbjct: 70 TMNFDVVKGKAIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKSLYECFSAFGK-ILSSK 128
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D + +G++FV + + + AD + ++M N F D + KS D A
Sbjct: 129 VMSDDRGS---KGYAFVHFQSQSAADRAIEEM-NGKFLKDCKVFVGRF---KSRKDREAE 181
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN D+ E+++E+F +G + V + GK R FGF+ +
Sbjct: 182 LRNKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGFVSFDSHE 241
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A KAV++ E++GQ + V A+ + +++ E
Sbjct: 242 AARKAVEEMNGKEVNGQPIFVGRAQKKVERQAE 274
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ KD+ A+L + V+I D +E LR++ G + V++M + G+S+G
Sbjct: 173 KSRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTN-SCGKSRG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E A+KA++E++ KE+ G+ I ++ K
Sbjct: 232 FGFVSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKERIRGCQ 291
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +N +++ RK G +I +K Q +++GF + +
Sbjct: 292 GAKLYIKNLDENIDDEKLRKEFSSFG----SISRVKVMQEEGQSKGFGLICF 339
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 35/277 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D SKG+AFV F+S+ A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKSLYECFSAFGKILSSKVMSDDRG--SKGYAFVHFQSQSAADRAIEEM 157
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LK + R SE N ++I N + ++ R+V G
Sbjct: 158 NGKFLKDCKVFVGRFKSRKDREAELRNKASEFTN-VYIKNFGDDMDDERLREVFSTYGR- 215
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--- 270
+ +++++ + SR GF FV + ++ A + ++M N +++G + A K
Sbjct: 216 ILSVKVMTNSCGKSR--GFGFVSFDSHEAARKAVEEM-NGK-EVNGQPIFVGRAQKKVER 271
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
Q LY+KN+ +N EK+++ F G +++V + +
Sbjct: 272 QAELKQMFEQLKKERIRGCQGAKLYIKNLDENIDDEKLRKEFSSFGSISRVKVMQEEGQS 331
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
+ FG I ++ A +A+ + + L + LA+
Sbjct: 332 KGFGLICFSSSEDAARAMTVMNGRILGSKPLNIALAQ 368
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 138/273 (50%), Gaps = 21/273 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 186
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q ++G++FV + N + AD + ++M N KL K+ D A
Sbjct: 187 VMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGKLLKGCKVFV-GRFKNRKDREAE 239
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ +
Sbjct: 240 LRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 299
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A KAV++ +I+GQ++ V A+ + +++ E
Sbjct: 300 AAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 332
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 119/277 (42%), Gaps = 35/277 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 215
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LKG + R SE N ++I N + ++ + V G
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-IYIKNFGGDMDDERLKDVFSKYGKT 274
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--- 270
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 275 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 329
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
Q LY+KN+ D EK++ F G +++V + +
Sbjct: 330 QAELKQMFEQLKRERICGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 389
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
+ FG I ++ A KA+ + + + L + LA+
Sbjct: 390 KGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + ++I D +E L+D+ G V++M D SG+SKG
Sbjct: 231 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 289
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERICGCQ 349
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ R G +I +K Q +++GF + +
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 397
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 131/273 (47%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 45 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 104
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 105 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILS 164
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + S D +
Sbjct: 165 CKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 220
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +Y+KN+ S E+ +++F++ GE+T + + GK R FGF++Y+
Sbjct: 221 FEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHD 280
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV + E+ GQ L V A+ + +++ E
Sbjct: 281 SAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEE 313
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 196
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K ++I N+ + +E+EFR++ E G +
Sbjct: 197 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGE-I 255
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L +D + ++RGF FV Y + A + +M + K G + A K +
Sbjct: 256 TSATLSRDQE--GKSRGFGFVNYSTHDSAQAAVDEMNDKEVK--GQKLYVGRAQKKHERE 311
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
A+ Q LYVKN+ D+ EK++E+F +G +T
Sbjct: 312 EELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTIT 359
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 50/132 (37%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD------------------------ 141
G +++ L D +E LR++ P G + ++M+D
Sbjct: 331 GVNLYVKNLTDDIDDEKLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKP 390
Query: 142 --------------------------KESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175
K G+SKGF FV F S + A KA+ E++ + + G
Sbjct: 391 EAAEKTEEAAKESGDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMING 450
Query: 176 KTIRCSLSETKN 187
K + +L++ K+
Sbjct: 451 KPLYVALAQRKD 462
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 135/275 (49%), Gaps = 16/275 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGE 114
Query: 163 KAIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ L GNV KN K + D I
Sbjct: 115 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 174
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHS 276
K Q+ + N +G+ FV Y + A Q + + N L+ + + PK D
Sbjct: 175 SCKVAQDENGNSKGYGFVHYETDEAA---AQAIKHVNGMLLNEKKVYVGYHIPKK--DRQ 229
Query: 277 AAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
+ ++KA +YVKNI + + ++ +ELF++ G+VT + + GK R FGF+++
Sbjct: 230 SKFEEMKANFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKPRGFGFVNFTT 289
Query: 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A KAV+D + GQ L V A+ + +++ E
Sbjct: 290 HEAAFKAVEDLNGKDFRGQELYVGRAQKKHEREEE 324
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 134/327 (40%), Gaps = 75/327 (22%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E+G SKG+ FV + + E A +AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 207
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K +++ N+ + T+DEFR++ E G V
Sbjct: 208 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIGPDVTDDEFRELFEKFG-DV 266
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L +D + + RGF FV + + A + + + +F+ G + A K +
Sbjct: 267 TSSSLARDQE--GKPRGFGFVNFTTHEAAFKAVEDLNGKDFR--GQELYVGRAQKKHERE 322
Query: 275 HSA-----AASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
AA KA LY+KN+ D+ EK++++F G +T KV+ + G
Sbjct: 323 EELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSAKVMRDTPQEG 382
Query: 321 K-----------------------------------------RDFGFIHYAERSSALKAV 339
+ + FGF+ ++ A KAV
Sbjct: 383 EEEVKDQEKDKENQKEAENEAESAESAEKKAEKKSDKKLGKSKGFGFVCFSNPDDATKAV 442
Query: 340 KDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ + I+ + L V LA+ + +K++
Sbjct: 443 AEMNQRMINNKPLYVALAQRKDVRKSQ 469
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 81/155 (52%), Gaps = 26/155 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + D ++++ R+L E GDV L +D+E G+ +GF
Sbjct: 225 KKDRQSKFEEMKANFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQE-GKPRGFG 283
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV+F + E A KA+++L+ K+ +G+ + ++ K+
Sbjct: 284 FVNFTTHEAAFKAVEDLNGKDFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGV 343
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+I N+ + +++ R++ + GP + + ++++D
Sbjct: 344 NLYIKNLDDDVDDEKLRQMFAEFGP-ITSAKVMRD 377
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 131/266 (49%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F A++A+D
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN D E++KE+F+++G+ V + SGK R FGF+ + + A KAV+
Sbjct: 190 FTNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVE 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+ + V A+ + +++ E
Sbjct: 250 EINGTELNGKTVFVGRAQKKMERQAE 275
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 148/331 (44%), Gaps = 47/331 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N +++ +++ E G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDEMEDEQLKEMFEKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+++++ D + ++RGF FV + + A+ + ++ +N +L+G T + A K
Sbjct: 219 -SVKVMTD--SSGKSRGFGFVSFEKHEDANKAVEE-INGT-ELNGKTVFVGRAQKKMERQ 273
Query: 272 ---------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFELLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAGFQQPMI 411
G P ++ F +G+ P +
Sbjct: 387 -----AGMRAMPPNAIINQFQPTSGYFMPAV 412
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 143/287 (49%), Gaps = 22/287 (7%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
KDK + A S +++G L D +E+ L +G V +R+ +D+ + S G+A+
Sbjct: 55 KDKEMNVAAKYRMAS-LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAY 113
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFR 204
V+F A+KA+D ++ +KGK+IR S+ L FI N+ K+
Sbjct: 114 VNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLY 173
Query: 205 KVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264
+ G + + +++ D Q ++G++FV + N + AD + ++M N KL
Sbjct: 174 EHFSAFGK-ILSSKVMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGKLLKGCKVF 226
Query: 265 SWADPKSTPDHSA----AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
K+ D A AS+ +Y+KN + E++K++F ++G+ V + SG
Sbjct: 227 V-GRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSG 285
Query: 321 K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
K + FGF+ + +A KAV++ +I+GQ++ V A+ + +++ E
Sbjct: 286 KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 332
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 122/277 (44%), Gaps = 35/277 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 215
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LKG + R SE N ++I N + ++ + V G
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-VYIKNFGGDMDDERLKDVFSKYGKT 274
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--S 271
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 275 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 329
Query: 272 TPDHSAAASQVK----------ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
+ Q+K LY+KN+ D EK++ F G +++V + +
Sbjct: 330 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 389
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
+ FG I ++ A KA+ + + + L + LA+
Sbjct: 390 KGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + V+I D +E L+D+ G V++M D SG+SKG
Sbjct: 231 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 289
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 349
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ R G +I +K Q +++GF + +
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 397
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 136/292 (46%), Gaps = 32/292 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 169 HSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSR 228
+ L GK + ++ ++ N ++ T+D+ +++ E G +IKD +
Sbjct: 160 NGMLLNGKKLFTNV-------YVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDD---GK 209
Query: 229 NRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKSTPDHSAAAS--QVKA 284
+RGF FV + + D + Q +L N K +G + A K+ Q+K
Sbjct: 210 SRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKL 266
Query: 285 ----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAER 332
LYVKN+ D+ E++++ F G +T KV+M G+S + FGF+ ++
Sbjct: 267 ERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEGRS--KGFGFVCFSAP 324
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAG 384
A KAV + I + L V LA+ + D+K Y L + G
Sbjct: 325 EEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG 376
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 127/270 (47%), Gaps = 34/270 (12%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQK---MLNANFKLDGNTPTISWADPKSTPDHSAA 278
Q+ S ++G+ FV + A+ S + ML KL N
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKLFTN------------------ 172
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALK 337
+YVKN ++ + +K+KE+F+++G +T VM R FGF+ + + +A +
Sbjct: 173 ------VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQ 226
Query: 338 AVKDTEKYEI-DGQVLEVVLAKPQTDKKTE 366
AV + E+ +G+ + V A+ + +++ E
Sbjct: 227 AVLELNGKEVAEGKCMYVGRAQKKAERQQE 256
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 274 GVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVM--MEEGRSKGFGFVCFSAPEEATKAV 331
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 332 TEMNGRIIVTKPLYVALAQRK 352
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 161/362 (44%), Gaps = 51/362 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G + ++ D SG+SKGF FV F ++E A KAI++L
Sbjct: 119 IFIKNLDKAIDHKALHDTFSAFGSILSCKVATD-SSGQSKGFGFVQFDTEEAALKAIEKL 177
Query: 169 HSKELKGKTI----------RCSLSE-TK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+ L K + R S+SE TK N +F+ N+ + +E++ + + + GP + +
Sbjct: 178 NGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGP-ITS 236
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS----- 271
+ +++D + S+ GF + + NA + LN K+DG + A KS
Sbjct: 237 VVVMRDGEGKSKCFGF---VNFENADDAARSVEALNGK-KVDGKEWYVGKAQKKSEREVE 292
Query: 272 -------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRD 323
+ +A Q LYVKN+ D+ +K+KELF G +T VM R
Sbjct: 293 LKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRG 352
Query: 324 FGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK--KTEGTF------PYSPGL 375
GF+ ++ A +A+ + I + L V LA+ + D+ + + F + +
Sbjct: 353 SGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRIARLQAQFSQMQPMAMASSV 412
Query: 376 VPTHLPHAGYGG-------FAGTPYGSVGT---GFGVAAGFQQPMIYGRGPMPSGMHMVP 425
P +P GG F G ++ + GFG M G GPMP+ VP
Sbjct: 413 APRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPN--FFVP 470
Query: 426 MV 427
MV
Sbjct: 471 MV 472
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 130/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + +RG+ FV + + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSRGYGFVHFETHDAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARARE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+Y+KN ++ EK+KE+F + G T V VM G R FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+++ V A+ + +++ E
Sbjct: 250 EMNGKELNGRIMFVGRAQKKMERQME 275
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L+++ G+ VR+M D ESG +G
Sbjct: 174 KSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTD-ESGGGRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF + E A+KA+DE++ KEL G+ + ++ K
Sbjct: 233 FGFVSFENHEDAQKAVDEMNGKELNGRIMFVGRAQKK 269
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 126/291 (43%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G S+G+ FV F + + A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SRGYGFVHFETHDAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETKN----------RLFIGNVPKNWTED----EFRKVIEDVGPGV 214
+ L + + +++ R F KN+ ED + +++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKEIFSKFG-NA 217
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++ ++ D RGF FV + N+ A + +M +L+G + A K
Sbjct: 218 TSVRVMTD--ESGGGRGFGFVSFENHEDAQKAVDEMNGK--ELNGRIMFVGRAQKKMERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
Q LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 274 MELKRRFEQMKQDRTTRYQGVNLYVKNLDDGIDDERLRKEFSPFGSITSAKVMMEGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + +++ Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLITQY 382
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGSITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 133/272 (48%), Gaps = 14/272 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S E +KA
Sbjct: 45 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 104
Query: 165 IDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
++EL+ +KGK R S+ + GNV KN K + D I
Sbjct: 105 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 164
Query: 221 KDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K Q+ N +G+ FV +Y A A + K +N L+ + PK + +
Sbjct: 165 KVAQDEHGNSKGYGFV-HYETAEAANNAIKHVNGML-LNEKKVFVGHHIPKK--ERMSKF 220
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
++KA +YVKNI + + ++ ++LF++HG++T + GK R FGF++Y + +
Sbjct: 221 EEMKANFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEA 280
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A AV+ E GQ L V A+ + +++ E
Sbjct: 281 ASVAVETLNDTEFHGQKLYVGRAQKKHEREEE 312
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 90/398 (22%), Positives = 152/398 (38%), Gaps = 104/398 (26%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 137 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETAEAANNAIKHV 195
Query: 169 HSKELKGKTI----------RCS----LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + R S + +++ N+ + T+DEFR + E G +
Sbjct: 196 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDDEFRDLFEKHG-DI 254
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ + +D Q ++RGF FV Y + A + + + + F G + A K +
Sbjct: 255 TSASIARDDQ--GKSRGFGFVNYIKHEAASVAVETLNDTEFH--GQKLYVGRAQKKHERE 310
Query: 275 ------HSAAASQVKA------LYVKNIPDNTSTEKIKELFQRHGEVTKV-----VMPPG 317
+ AA + ++ LY+KN+ D+ EK++++F G +T MP
Sbjct: 311 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAD 370
Query: 318 KS---------------------------------------------------GK-RDFG 325
+S GK + FG
Sbjct: 371 RSDSPSDKKEEEKDGKEESKETEGEAKEDSTDDKKEDTKAGDKVTIKGEKKILGKSKGFG 430
Query: 326 FIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKT--EGTFPYSPGLVPTHLPHA 383
F+ ++ A KAV + + ++G+ L V LA+ + +K E T L +
Sbjct: 431 FVCFSNPDEATKAVTEMNQKMLEGKPLYVALAQRKDVRKNQLEATIQARNQL---RMQQQ 487
Query: 384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIY---GRGPMP 418
F G P + G QQPM++ GRG MP
Sbjct: 488 QQQQFGGIPQMFIAPG-------QQPMMFPPGGRGQMP 518
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 95/367 (25%), Positives = 159/367 (43%), Gaps = 58/367 (15%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +FI L K + L D G++ ++ D SGESKG+ FV + E A+ AID
Sbjct: 128 ANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATDA-SGESKGYGFVQYERDEAAQAAID 186
Query: 167 ELHSKELKGKTIRC-----------SLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+L+ + K + S + K N +++ N+ +N TED+ +++ G
Sbjct: 187 KLNGMLMNDKKVYVGPFIRKQERDNSPGQVKFNNVYVKNLSENTTEDDLKEIFGKFGTIT 246
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+ + + R++ F FV + + A + Q+ LN K D + A KS
Sbjct: 247 SAVVM---REGDGRSKCFGFVNFESPDDAAQAVQE-LNGK-KFDDKEWYVGRAQKKSERE 301
Query: 272 ---------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+A Q LY+KN+ D+ +K++ELF +G +T VM
Sbjct: 302 MELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKT--EGTF------PYSP 373
R GF+ + A +A+ + + + L V LA+ + D+K + F P +P
Sbjct: 362 RGSGFVAFKSAEDASRALAEMNSKMVGSKPLYVALAQRKEDRKARLQAQFSQLRPVPLAP 421
Query: 374 G------LVPTHLPHAGYGGFAGTP---YGSVGTGFGVAAGFQQPMIYGR----GPMPSG 420
+ P +P G F G P + + GF GFQQP++ G GPMP+
Sbjct: 422 SVGPRMPMFPPGVPGVGQQLFYGQPPPAFINTQPGF----GFQQPLMPGMRPGAGPMPN- 476
Query: 421 MHMVPMV 427
++PMV
Sbjct: 477 -FIMPMV 482
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 126/274 (45%), Gaps = 22/274 (8%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
+ +++G L + L D+ +G V VR+ +D + S G+A+V++ S A +A+
Sbjct: 39 ATSLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARAL 98
Query: 166 DELHSKELKGKTIRCSLSE---------TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+ L+ + GK IR S T N +FI N+ K+ G + +
Sbjct: 99 EMLNFTPINGKPIRIMYSNRDPSLRKSGTAN-IFIKNLDKSIDNKALYDTFCVFG-NILS 156
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT---PTISWADPKSTP 273
++ D S +G+ FV Y + A + K LN D P I K
Sbjct: 157 CKVATDASGES--KGYGFVQYERDEAAQAAIDK-LNGMLMNDKKVYVGPFIR----KQER 209
Query: 274 DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAER 332
D+S + +YVKN+ +NT+ + +KE+F + G +T VVM G + FGF+++
Sbjct: 210 DNSPGQVKFNNVYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFGFVNFESP 269
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A +AV++ + D + V A+ +++++ E
Sbjct: 270 DDAAQAVQELNGKKFDDKEWYVGRAQKKSEREME 303
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 13/147 (8%)
Query: 42 NFEENDDDEEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGE--DEKDKHAQL 99
NFE DD A++ Q + DD +V +K + E ++ +K+ Q
Sbjct: 265 NFESPDD----------AAQAVQELNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQE 314
Query: 100 LALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
A + +++ L ++ LR+L G + ++M+D +G S+G FV+F+S E
Sbjct: 315 AADKYQNTNLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRD-SNGVSRGSGFVAFKSAE 373
Query: 160 FAKKAIDELHSKELKGKTIRCSLSETK 186
A +A+ E++SK + K + +L++ K
Sbjct: 374 DASRALAEMNSKMVGSKPLYVALAQRK 400
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 135/270 (50%), Gaps = 15/270 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D + S G+A+V+F A+KA+D
Sbjct: 109 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 168
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK IR S+ L FI N+ K+ + G + + +
Sbjct: 169 TMNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 227
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSA 277
++ D Q +RG++FV + N AD + ++M A K D + + K +
Sbjct: 228 VMSDDQG---SRGYAFVHFQNQNAADRAIEEMNGALLK-DCRLFVGRFKNRKDREAELQN 283
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
++ +YVKN D+ E++KE+F ++G+ V + GK + FGF+ + +A
Sbjct: 284 KVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGFGFVSFDSHEAAK 343
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
KAV++ +++GQ+L V A+ +++++ E
Sbjct: 344 KAVEEMNGKDVNGQLLFVGRAQKKSERQAE 373
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 124/284 (43%), Gaps = 37/284 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + S+G+AFV F+++ A +AI+E+
Sbjct: 199 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SRGYAFVHFQNQNAADRAIEEM 256
Query: 169 HSKELKGKTIRCSLSETKNR----------------LFIGNVPKNWTEDEFRKVIEDVGP 212
+ LK R + KNR +++ N + ++ ++V G
Sbjct: 257 NGALLK--DCRLFVGRFKNRKDREAELQNKVNEFTNVYVKNFGDDMDDERLKEVFSKYGK 314
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS- 271
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A KS
Sbjct: 315 TL-SVKVMTDSGGKSK--GFGFVSFDSHEAAKKAVEEMNGKD--VNGQLLFVGRAQKKSE 369
Query: 272 -TPDHSAAASQVK----------ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
+ Q+K LY+KN+ D EK+ F G +++V + +
Sbjct: 370 RQAELKQMFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMREEGR 429
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
+ FG I ++ A KA+ + + + L + LA+ ++K
Sbjct: 430 SKGFGLICFSSPEEATKAMAEMNGRILGSKPLYIALAQRPXERK 473
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L D +E L ++ PIG + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSET---KNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S R +GN+ KN K + D +I K
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST----PDHSAA 278
N +RGF FV + + A QK +N + N + KS + A
Sbjct: 131 VYNEHGSRGFGFVHFETHEAA----QKAINTMNGMLLNDRKVFVGHFKSRQKREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A +YVKN+ + + +++LF + G+ V VM R FGFI++ + A K
Sbjct: 187 ALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ GQ+L V A+ + +++ E
Sbjct: 247 AVDHMNGKEVSGQLLYVGRAQKRAERQNE 275
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 126/289 (43%), Gaps = 33/289 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + +++ ++ S+GF FV F + E A+KAI+ +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 158
Query: 169 HSKELKGKTIRCSLSETKNR--------------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ + +++ N+ + E + + G
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGK-T 217
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+++++++D SR GF F+ + + A + M N ++ G + A ++
Sbjct: 218 QSVKVMRDSNGQSR--GFGFINFEKHEEAQKAVDHM-NGK-EVSGQLLYVGRAQKRAERQ 273
Query: 275 HSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR 322
+ Q+K LYVKN+ D+ + +++KE+F +G +T + S +
Sbjct: 274 NELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSHSK 333
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ + + A+L A + +++ L D E+ L+DL G V++M+D +G+S+G
Sbjct: 174 KSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS-------------------ETKNR-- 188
F F++F E A+KA+D ++ KE+ G+ + + E +NR
Sbjct: 233 FGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQ 292
Query: 189 ---LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ + +D ++V G I K S ++GF FV +
Sbjct: 293 GVNLYVKNLDDSINDDRLKEVFSTYG----VITSAKVMTESSHSKGFGFVCF 340
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +++ L+++ G + ++M ES SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGTKPLYVALAQRK 371
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 131/266 (49%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN D EK++ELF ++G + + ++GK R FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+++ V A+ + +++TE
Sbjct: 250 EMNGKEMNGKLMYVGRAQKKVERQTE 275
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I + +E LR+L G+ +R+M D E+G+S+G
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTD-ENGKSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A+KA+DE++ KE+ GK + ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 131/291 (45%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N +++ R++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAM 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
+I ++ D SR GF FV + + A + +M +++G + A K
Sbjct: 219 -SIRVMTDENGKSR--GFGFVSFERHEDAQKAVDEMNGK--EMNGKLMYVGRAQKKVERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 274 TELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + +++ T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 128/265 (48%), Gaps = 8/265 (3%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
+Y+KN + E +KELF + V + P GKS + FGF+ Y + A KAV++
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKAVEE 247
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI G+++ V A+ + +++ E
Sbjct: 248 MNGKEISGKIIFVGRAQKKVERQAE 272
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 135/287 (47%), Gaps = 32/287 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTI----------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
+ L + + R + K + F KN+ E+ + ++++ +++
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSKTLSVK 218
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-------- 270
+++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 VMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQAELK 274
Query: 271 ----STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDF 324
+ Q LY+KN+ D EK+++ F G +T KV++ G+S + F
Sbjct: 275 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS--KGF 332
Query: 325 GFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
GF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 379
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 289 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKA 346
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 347 VTEMNGRIVGSKPLYVALAQRK 368
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 137/285 (48%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D GD+ ++ D E+G+SKGF FV F + AK+AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK L++ N+ T+++F+++ GP V
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEKFQEMFAQFGPIV 246
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD + +GF FV Y N+ A + + + ++ L+G + A K+
Sbjct: 247 -SASLEKDAD--GKLKGFGFVNYENHEDAVKAVEALNESD--LNGEKLYVGRAQKKNERM 301
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H A Q L+VKN+ D+ EK++E F +G +T + ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRSENGKS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 130/269 (48%), Gaps = 14/269 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ + +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E +KA
Sbjct: 36 SSASLYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 165 IDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
ID+L+ +KG+ R S+ L GN+ KN D K + D I
Sbjct: 96 IDQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 221 KDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K + + +++GF FV + A ++ ++A + N I A S + +
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAA----KEAIDALNGMLLNGQEIYVAPHLSRKERDSQL 211
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ KA LYVKNI T+ EK +E+F + G + + GK + FGF++Y
Sbjct: 212 EETKAHYTNLYVKNINSETTDEKFQEMFAQFGPIVSASLEKDADGKLKGFGFVNYENHED 271
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363
A+KAV+ + +++G+ L V A+ + ++
Sbjct: 272 AVKAVEALNESDLNGEKLYVGRAQKKNER 300
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L + P G + ++M+ E+G+SKGF FV F + E A KAI
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRS-ENGKSKGFGFVCFSTPEEATKAI 379
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 380 TEKNQQIVAGKPLYVAIAQRKD 401
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 131/266 (49%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN D EK++ELF ++G + + ++GK R FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+++ V A+ + +++TE
Sbjct: 250 EMNGKEMNGKLMYVGRAQKKVERQTE 275
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I + +E LR+L G+ +R+M D E+G+S+G
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTD-ENGKSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A+KA+DE++ KE+ GK + ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 131/291 (45%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N +++ R++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAM 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
+I ++ D SR GF FV + + A + +M +++G + A K
Sbjct: 219 -SIRVMTDENGKSR--GFGFVSFERHEDAQKAVDEMNGK--EMNGKLMYVGRAQKKVERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 274 TELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + +++ T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>gi|194761400|ref|XP_001962917.1| GF14192 [Drosophila ananassae]
gi|190616614|gb|EDV32138.1| GF14192 [Drosophila ananassae]
Length = 852
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 25/225 (11%)
Query: 57 AGASEKDQSAEANRN----DDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIG 112
AG + ANRN DDD+ + E + GE E D P+ ++F+G
Sbjct: 340 AGLVNNNNPCSANRNVVAMDDDSCFRMDAETAVVTYGEKEPD---------PDNIKMFVG 390
Query: 113 GLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-K 171
+PK E LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K
Sbjct: 391 QVPKSMDESQLREMFEEYGPVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVK 450
Query: 172 ELKGKT--IRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L G I+ ++++NR LF+G + K E++ RK+ E G +E +++D QN
Sbjct: 451 TLNGMYHPIQMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN 508
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP--TISWAD 268
+++G +FV + A + + L+ N ++G T + +AD
Sbjct: 509 -GQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFAD 552
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 764 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 823
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L + K+
Sbjct: 824 AIKAMNGFQVGTKRLKVQLKKPKD 847
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 133/276 (48%), Gaps = 13/276 (4%)
Query: 100 LALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
+A + +++G L D +E+ L +G V +R+ +D + S G+A+V+F
Sbjct: 3 IAAKYRQASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLA 62
Query: 160 FAKKAIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVE 215
A+KA+D ++ +KGK+IR S+ L IGNV KN K + +
Sbjct: 63 DAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFG 122
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
I K + +RG++FV + N AD + ++M A K + KS D
Sbjct: 123 KILSSKVMSDDHGSRGYAFVHFQNQIAADRAIEEMNGALLK----DCRLFVGRFKSRKDR 178
Query: 276 SA----AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYA 330
A A + +Y+KN D E++ E+F ++G+ V + SGK + FGF+ +
Sbjct: 179 EAEFQNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFD 238
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A +AV++ +I+GQ+L V A+ + +++ E
Sbjct: 239 SHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAE 274
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 32/194 (16%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
KD+ A+ + V+I + +E L ++ G V++M D SG+SKGF F
Sbjct: 176 KDREAEFQNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTD-SSGKSKGFGF 234
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK------------------------NR 188
VSF S E AK+A++E++ K++ G+ + ++ K +
Sbjct: 235 VSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCQGAK 294
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
L+I N+ + +++ R+ G +I +K Q R++GF + + + A+ + +
Sbjct: 295 LYIKNLDETIDDEKLRREFSSFG----SISRVKVMQEEGRSKGFGLICF---SSAEEATK 347
Query: 249 KMLNANFKLDGNTP 262
M N ++ G+ P
Sbjct: 348 AMTEMNGRILGSKP 361
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 120/274 (43%), Gaps = 46/274 (16%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + + L + G + ++M D S+G+AFV F+++ A +AI+E+
Sbjct: 100 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDHG--SRGYAFVHFQNQIAADRAIEEM 157
Query: 169 HSKELKGKTIRCSL------------SETKNR------LFIGNVPKNWTEDEFRKVIEDV 210
+ LK C L +E +N+ ++I N ++ +V
Sbjct: 158 NGALLKD----CRLFVGRFKSRKDREAEFQNKAHEFTNVYIKNFGDEMDDERLNEVFSKY 213
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
G + +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 214 GKTL-SVKVMTDSSGKSK--GFGFVSFDSHEAAKRAVEEMNGKD--INGQLLFVGRAQKK 268
Query: 271 S--TPDHSAAASQVK----------ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK 318
+ + Q+K LY+KN+ + EK++ F G +++V + +
Sbjct: 269 AERQAELKQMFEQLKHERFRRCQGAKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEE 328
Query: 319 SGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352
+ FG I ++ A KA+ E++G++L
Sbjct: 329 GRSKGFGLICFSSAEEATKAMT-----EMNGRIL 357
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFIQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFIQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 143/325 (44%), Gaps = 47/325 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP S+ GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPNGKSK--GFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAG 405
G P ++ F AAG
Sbjct: 387 -----AGMRALPANAILNQFQPAAG 406
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 144/325 (44%), Gaps = 47/325 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAG 405
G P ++ F AAG
Sbjct: 387 -----AGMRALPANAILNQFQPAAG 406
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 144/306 (47%), Gaps = 15/306 (4%)
Query: 72 DDDTPHVEEEEKPTASVGEDEKD-KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPI 130
D ++ VE P+ S E + + A ++ + +++G L +E L ++ PI
Sbjct: 24 DQESSTVESSTAPSTSATESTAEGEQASSSSVSETTASLYVGELEPSINEALLFEIFSPI 83
Query: 131 GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE---TKN 187
G V +R+ +D + S G+A+V++ + + +KAIDEL+ +KG+ IR S+ K
Sbjct: 84 GQVSSIRVCRDALTKRSLGYAYVNYHNVKDGEKAIDELNYSVVKGQPIRIMWSQRDPAKR 143
Query: 188 RLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIK-DPQNPSRNRGFSFVLYYNNACADY 245
R GNV KN K + D I K N +++GF FV + + A
Sbjct: 144 RNGEGNVFIKNLHPAIDNKALHDTFSAFGRILSCKVATDNFGQSKGFGFVHFESPEAAQA 203
Query: 246 SRQK----MLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKE 301
+ + +LN N G P ++ D +S + +YVKNI S E++KE
Sbjct: 204 AIENVNGMLLNNNEVYVG--PHVARRDRQSKLEE--VIKSFTNVYVKNIDLEASEEEVKE 259
Query: 302 LFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360
LF G VT + GK R F F++Y E +A+K+++ + G+ L V A+ +
Sbjct: 260 LFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKSIESLNDQDYKGKKLYVGRAQKK 319
Query: 361 TDKKTE 366
+++ E
Sbjct: 320 SERLEE 325
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 151/347 (43%), Gaps = 42/347 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G + ++ D G+SKGF FV F S E A+ AI+ +
Sbjct: 150 VFIKNLHPAIDNKALHDTFSAFGRILSCKVATDN-FGQSKGFGFVHFESPEAAQAAIENV 208
Query: 169 HSKELKGKTIRC--------------SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + ++ +++ N+ +E+E +++ G V
Sbjct: 209 NGMLLNNNEVYVGPHVARRDRQSKLEEVIKSFTNVYVKNIDLEASEEEVKELFTPFGT-V 267
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+ L KD + ++RGF+FV Y + A S + + + ++K G + A KS
Sbjct: 268 TSFYLEKDAE--GKSRGFAFVNYEEHEAAVKSIESLNDQDYK--GKKLYVGRAQKKSERL 323
Query: 272 ---TPDHSAA------ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ AA SQ L+VKN+ D+ EK+KE FQ G ++ V + +SGK
Sbjct: 324 EELKKQYEAARIEKLTKSQGVNLFVKNLDDSIDDEKLKEEFQSFGTISSVKVMIDESGKS 383
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ FGF+ ++ A +A+ + ++ + G+ L V LA+ + D + L
Sbjct: 384 KGFGFVSFSSPEEASRAISEMNQHMLAGKPLYVALAQ-RKDVRRSQLEQQIQARNQLRLQ 442
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIY---GRGPMPSGMHMVP 425
A G G P + T F QQP RGP+P+ ++P
Sbjct: 443 QAAAAG--GLPGQFIPTPFIYG---QQPQFLPPGARGPLPNQPFLIP 484
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L++ + G + V++M D ESG+SKGF FVSF S E A +AI
Sbjct: 343 GVNLFVKNLDDSIDDEKLKEEFQSFGTISSVKVMID-ESGKSKGFGFVSFSSPEEASRAI 401
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ L GK + +L++ K+
Sbjct: 402 SEMNQHMLAGKPLYVALAQRKD 423
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 142/287 (49%), Gaps = 22/287 (7%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
KDK + A S +++G L D +E+ L +G V +R+ +D+ + S G+A+
Sbjct: 55 KDKEMNVAAKYRMAS-LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAY 113
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFR 204
V+F A+KA+D ++ +KGK+IR S+ L FI N+ K+
Sbjct: 114 VNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLY 173
Query: 205 KVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264
+ G + + +++ D Q ++G++FV + N + AD + ++M N KL
Sbjct: 174 EHFSAFGK-ILSSKVMSDDQG---SKGYAFVHFQNQSAADRAIEEM---NGKLLKGCKVF 226
Query: 265 SWADPKSTPDHSA----AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
K+ D A AS+ +Y+KN E++K++F ++G+ V + SG
Sbjct: 227 V-GRFKNRKDREAELRSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSG 285
Query: 321 K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
K + FGF+ + +A KAV++ +I+GQ++ V A+ + +++ E
Sbjct: 286 KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 332
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 121/277 (43%), Gaps = 35/277 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 215
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LKG + R SE N ++I N ++ + V G
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-IYIKNFGGEMDDERLKDVFSKYGKT 274
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--S 271
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 275 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 329
Query: 272 TPDHSAAASQVK----------ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
+ Q+K LY+KN+ D EK++ F G +++V + +
Sbjct: 330 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 389
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
+ FG I ++ A KA+ + + + L + LA+
Sbjct: 390 KGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + ++I + +E L+D+ G V++M D SG+SKG
Sbjct: 231 KNRKDREAELRSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 289
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 349
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ R G +I +K Q +++GF + +
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 397
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 130/272 (47%), Gaps = 14/272 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ + +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E K A
Sbjct: 40 SSASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTA 99
Query: 165 IDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
I++L+ +KG R S+ + + GN+ KN D K + D I
Sbjct: 100 IEKLNYAPIKGVPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKALHDTFSVFGNILSC 159
Query: 221 KDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K + + N RGF FV + ++ A ++ ++A + N + A S D +
Sbjct: 160 KIATDEAGNSRGFGFVHFEDDEAA----KEAIDAINGMLLNGQEVYVAQHVSKKDRQSKL 215
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ KA +YVKNI +T E+ +E F + G +T + GK R FGF++Y +
Sbjct: 216 DEAKANFTNVYVKNIHPDTGDEEFEEFFTKVGPITSAHLEKDNEGKLRGFGFVNYENHND 275
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A KAV++ + + GQ L V A+ + ++ E
Sbjct: 276 AAKAVEELNETDFKGQTLHVGRAQKKHERLQE 307
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 133/285 (46%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D G++ ++ D E+G S+GF FV F E AK+AID +
Sbjct: 132 IFIKNLHPDIDNKALHDTFSVFGNILSCKIATD-EAGNSRGFGFVHFEDDEAAKEAIDAI 190
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ + + L E K +++ N+ + ++EF + VGP +
Sbjct: 191 NGMLLNGQEVYVAQHVSKKDRQSKLDEAKANFTNVYVKNIHPDTGDEEFEEFFTKVGP-I 249
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD N + RGF FV Y N+ A + +++ +FK G T + A K
Sbjct: 250 TSAHLEKD--NEGKLRGFGFVNYENHNDAAKAVEELNETDFK--GQTLHVGRAQKKHERL 305
Query: 275 HSAAAS------------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
Q L+VKN+ D +K++E F +G +T V + ++GK
Sbjct: 306 QELKKQYEAFRLEKLEKYQGVNLFVKNLDDTIDDQKLEEEFAPYGTITSVKVMRSENGKS 365
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++
Sbjct: 366 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 410
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L ++ L + P G + V++M+ E+G+SKGF FV F + E A KAI
Sbjct: 325 GVNLFVKNLDDTIDDQKLEEEFAPYGTITSVKVMRS-ENGKSKGFGFVCFSTPEEATKAI 383
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 384 TEKNQQIVAGKPLYVAIAQRKD 405
>gi|357603823|gb|EHJ63934.1| hypothetical protein KGM_17340 [Danaus plexippus]
Length = 438
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 118/227 (51%), Gaps = 11/227 (4%)
Query: 136 VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNV 194
+RLM D SG ++G+AFV + + A A+ +L+ E++ + I S RLF+GN+
Sbjct: 1 MRLMMDF-SGSNRGYAFVMYTERAEATAAVKQLNGYEIRPRRHIGVVKSVDNCRLFVGNI 59
Query: 195 PKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN 254
PK T+++ R+ + + + L K+ + NRGF+FV + + A +R+ ++
Sbjct: 60 PKTKTKEDVREELSKRVSDIVDVILYKNCFDRKLNRGFAFVEFTCHRAAAMARRALVPGC 119
Query: 255 FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR--HGEVTKV 312
+L + WA+P+ D +VK LYV+N T+ + I+++F+ + +V +V
Sbjct: 120 VRLWDQEVMVDWAEPEPDIDDE-QMQRVKVLYVRNFEIRTTPDVIQKVFESTINHKVERV 178
Query: 313 VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359
D+ FIH+ ER A A+ + +IDG +E+ AKP
Sbjct: 179 ------KKIYDYAFIHFYEREHAELAIAKLQNADIDGSNIEIRWAKP 219
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 130/269 (48%), Gaps = 14/269 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ + +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E +KA
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 165 IDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
I++L+ +KG+ R S+ L GN+ KN D K + D I
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 221 KDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K + + +++GF FV + A ++ ++A + N I A S + +
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAA----KEAIDALNGMLLNGQEIYVAPHLSRKERDSQL 211
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ KA LYVKNI T+ E+ +ELF + G + + GK + FGF++Y +
Sbjct: 212 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHED 271
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363
A+KAV+ E++G+ L V A+ + ++
Sbjct: 272 AVKAVEALNDSELNGEKLYVGRAQKKNER 300
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 137/285 (48%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D GD+ ++ D E+G+SKGF FV F + AK+AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK L++ N+ T+++F+++ GP V
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD + +GF FV Y + A + + + ++ +L+G + A K+
Sbjct: 247 -SASLEKDAD--GKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 301
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H A Q L+VKN+ D+ EK++E F +G +T + ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L + P G + ++M+ E+G+SKGF FV F + E A KAI
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAI 379
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 380 TEKNQQIVAGKPLYVAIAQRKD 401
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 130/269 (48%), Gaps = 14/269 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ + +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E +KA
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 165 IDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
I++L+ +KG+ R S+ L GN+ KN D K + D I
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 221 KDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K + + +++GF FV + A ++ ++A + N I A S + +
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAA----KEAIDALNGMLLNGQEIYVAPHLSRKERDSQL 211
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ KA LYVKNI T+ E+ +ELF + G + + GK + FGF++Y +
Sbjct: 212 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHED 271
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363
A+KAV+ E++G+ L V A+ + ++
Sbjct: 272 AVKAVEALNDSELNGEKLYVGRAQKKNER 300
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 137/285 (48%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D GD+ ++ D E+G+SKGF FV F + AK+AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK L++ N+ T+++F+++ GP V
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD + +GF FV Y + A + + + ++ +L+G + A K+
Sbjct: 247 -SASLEKDAD--GKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 301
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H A Q L+VKN+ D+ EK++E F +G +T + ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L + P G + ++M+ E+G+SKGF FV F + E A KAI
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAI 379
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 380 TEKNQQIVAGKPLYVAIAQRKD 401
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 130/269 (48%), Gaps = 14/269 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ + +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E +KA
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 165 IDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
I++L+ +KG+ R S+ L GN+ KN D K + D I
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 221 KDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K + + +++GF FV + A ++ ++A + N I A S + +
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAA----KEAIDALNGMLLNGQEIYVAPHLSRKERDSQL 211
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ KA LYVKNI T+ E+ +ELF + G + + GK + FGF++Y +
Sbjct: 212 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHED 271
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363
A+KAV+ E++G+ L V A+ + ++
Sbjct: 272 AVKAVEALNDSELNGEKLYVGRAQKKNER 300
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 137/285 (48%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D GD+ ++ D E+G+SKGF FV F + AK+AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK L++ N+ T+++F+++ GP V
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD + +GF FV Y + A + + + ++ +L+G + A K+
Sbjct: 247 -SASLEKDAD--GKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 301
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H A Q L+VKN+ D+ EK++E F +G +T + ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L + P G + ++M+ E+G+SKGF FV F + E A KAI
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAI 379
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 380 TEKNQQIVAGKPLYVAIAQRKD 401
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 130/269 (48%), Gaps = 14/269 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ + +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E +KA
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 165 IDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
I++L+ +KG+ R S+ L GN+ KN D K + D I
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 221 KDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K + + +++GF FV + A ++ ++A + N I A S + +
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAA----KEAIDALNGMLLNGQEIYVAPHLSRKERDSQL 211
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ KA LYVKNI T+ E+ +ELF + G + + GK + FGF++Y +
Sbjct: 212 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHED 271
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363
A+KAV+ E++G+ L V A+ + ++
Sbjct: 272 AVKAVEALNDSELNGEKLYVGRAQKKNER 300
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 137/285 (48%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D GD+ ++ D E+G+SKGF FV F + AK+AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK L++ N+ T+++F+++ GP V
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD + +GF FV Y + A + + + ++ +L+G + A K+
Sbjct: 247 -SASLEKDAD--GKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 301
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H A Q L+VKN+ D+ EK++E F +G +T + ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L + P G + ++M+ E+G+SKGF FV F + E A KAI
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAI 379
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 380 TEKNQQIVAGKPLYVAIAQRKD 401
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +K+LF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEIGGKVIFVGRAQKKVERQAE 275
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 134/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ + + G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EIGGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L+DL G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 143/325 (44%), Gaps = 47/325 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP S+ GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPNGKSK--GFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAG 405
G P ++ F AAG
Sbjct: 387 -----AGMRALPANAILNQFQPAAG 406
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 136/285 (47%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D GD+ ++ D E+G+SKGF FV F + AK+AID L
Sbjct: 17 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 75
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK L++ N+ T+++F+ + GP V
Sbjct: 76 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQDLFIQFGPIV 135
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD + +GF FV Y N+ A + + + ++ L+G + A K+
Sbjct: 136 -SASLEKDAD--GKLKGFGFVNYENHEDAVKAVEALNESD--LNGEKLYVGRAQKKNERM 190
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H A Q L+VKN+ D+ EK++E F +G +T + ++GK
Sbjct: 191 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSAKVMRTENGKS 250
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++
Sbjct: 251 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 295
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L + P G + ++M+ E+G+SKGF FV F + E A KAI
Sbjct: 210 GVNLFVKNLDDSVDDEKLEEEFTPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAI 268
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 269 TEKNQQIVAGKPLYVAIAQRKD 290
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 133/276 (48%), Gaps = 14/276 (5%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ +
Sbjct: 43 ASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 102
Query: 161 AKKAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVET 216
++A+++L+ +KGK R S+ + GNV KN K + D
Sbjct: 103 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGN 162
Query: 217 IELIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
I K Q+ N +G+ FV +Y A A + K +N N + S D
Sbjct: 163 ILSCKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDR 218
Query: 276 SAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYA 330
+ ++KA +Y+KNI + + E+ +ELF++ GE+T + + GK R FGF++++
Sbjct: 219 QSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFS 278
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV + + EI Q L V A+ + +++ E
Sbjct: 279 THESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEE 314
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 69/118 (58%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V+I + +D +EE+ R+L E G++ L +D+E G+S+GF
Sbjct: 215 KKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFG 273
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIE 208
FV+F + E A+ A+DE++ KE++ + +L++G K+ E+E RK E
Sbjct: 274 FVNFSTHESAQAAVDEMNEKEIRTQ-----------KLYVGRAQKKHEREEELRKQYE 320
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
G+SKGF FV F S + A KA+ E++ + + GK + +L++ K+
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKD 472
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 126/274 (45%), Gaps = 22/274 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E + AI+
Sbjct: 50 ASLYVGELDPSVSEALLYDIFSPIGPVTSIRVCRDAITKTSLGYAYVNFNDHESGRTAIE 109
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
+L+ +KGK R S+ L GN+ KN D K + D I K
Sbjct: 110 KLNYSPIKGKPCRIMWSQRDPALRKKGAGNIFIKNLHPDIDNKALHDTFSVFGNILSCKI 169
Query: 223 PQNPS-RNRGFSFVLYYNNACA----DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
+ + +++GF FV + + A D MLN + A S D +
Sbjct: 170 ATDETGKSKGFGFVHFEEDNAAVEAVDAINGMMLNGR--------EVYVAQHVSKKDRES 221
Query: 278 AASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
+VKA +YVKN+ +T ++ LF ++G +T + M GK R FGFI++
Sbjct: 222 KLEEVKANFTNVYVKNVDVDTPEDEFTALFSKYGPITSIAMEKDSEGKFRGFGFINFENH 281
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A KAV++ E GQ L V A+ + ++ E
Sbjct: 282 DDAAKAVEELNDLEFKGQKLYVGRAQKKYERLQE 315
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 156/358 (43%), Gaps = 46/358 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D G++ ++ D E+G+SKGF FV F A +A+D +
Sbjct: 140 IFIKNLHPDIDNKALHDTFSVFGNILSCKIATD-ETGKSKGFGFVHFEEDNAAVEAVDAI 198
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ + + L E K +++ NV + EDEF + GP +
Sbjct: 199 NGMMLNGREVYVAQHVSKKDRESKLEEVKANFTNVYVKNVDVDTPEDEFTALFSKYGP-I 257
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I + KD + + RGF F+ + N+ A + +++ + FK G + A K
Sbjct: 258 TSIAMEKDSE--GKFRGFGFINFENHDDAAKAVEELNDLEFK--GQKLYVGRAQKKYERL 313
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
++ A Q L+VKN+ D+ EK++ F G +T + + GK
Sbjct: 314 QELKKQYEASRLEKLAKYQGVNLFVKNLDDSIDDEKLEAEFAPFGSITSAKVMRNEEGKS 373
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
++FGF+ ++ A KA+ + + + G+ L V +A+ + ++++ + +
Sbjct: 374 KNFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ---------LAQQIQ 424
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQ 439
+ + G+ F QPM YG P P G VP P+ +G V +Q
Sbjct: 425 ARNQLRYQQATAAAAAAAAGMPGQFMQPMFYGVMP-PRG---VPFNGPNSPMGAVPRQ 478
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L P G + ++M+++E G+SK F FV F + E A KAI
Sbjct: 333 GVNLFVKNLDDSIDDEKLEAEFAPFGSITSAKVMRNEE-GKSKNFGFVCFSTPEEATKAI 391
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 392 TEKNQQIVAGKPLYVAIAQRKD 413
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 14/274 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P + + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 61 PQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGE 120
Query: 163 KAIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ L GNV KN K + D I
Sbjct: 121 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 180
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
K Q+ + N +G+ FV Y + A + K +N N L+ + + PK D +
Sbjct: 181 SCKVAQDENGNSKGYGFVHYETDEAAAQAI-KHVN-NMLLNEKKVYVGYHIPKK--DRQS 236
Query: 278 AASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
++KA +YVKNI + E+ ++LF ++G+VT + GK R FGF+++
Sbjct: 237 KFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTH 296
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A KAV++ E GQ L V A+ + +++ E
Sbjct: 297 ECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEE 330
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 101/427 (23%), Positives = 163/427 (38%), Gaps = 95/427 (22%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E+G SKG+ FV + + E A +AI +
Sbjct: 155 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 213
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
++ L K + + E K +++ N+ T++EFR + G V
Sbjct: 214 NNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYG-DV 272
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L +D + ++RGF FV + + CA + +++ F+ G + A K +
Sbjct: 273 TSSSLARDSE--GKSRGFGFVNFTTHECAAKAVEELNGKEFR--GQDLYVGRAQKKHERE 328
Query: 275 HSA-----AASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPG---- 317
AA KA LY+KN+ D+ +K++++F +G +T VM
Sbjct: 329 EELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKLRQMFSEYGPITSAKVMRDAVTEG 388
Query: 318 -----------------------------------KSGKR------DFGFIHYAERSSAL 336
K G R FGF+ ++ A
Sbjct: 389 SAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTEKKGDRRLGKSKGFGFVCFSNPDDAT 448
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSV 396
KAV + + I+G+ L V LA+ + +K + L AG P +
Sbjct: 449 KAVAEMNQRMIEGKPLYVALAQRKDVRKNQLEASIQ---ARNQLRMQQAAAQAGLPQQYM 505
Query: 397 GTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRRVDRSN 456
T A G QQP MP G +P P G +G Q G RP +
Sbjct: 506 QTPVYYAPG-QQPNF-----MPPGGRGMP--FPQGGLGMPAVQGG------RPGQFPPYA 551
Query: 457 GPGGRGG 463
GGRGG
Sbjct: 552 QQGGRGG 558
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 130/269 (48%), Gaps = 14/269 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ + +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E +KA
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 165 IDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
I++L+ +KG+ R S+ L GN+ KN D K + D I
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 221 KDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K + + +++GF FV + A ++ ++A + N I A S + +
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAA----KEAIDALNGMLLNGQEIYVAPHLSRKERDSQL 211
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ KA LYVKNI T+ E+ +ELF + G + + GK + FGF++Y +
Sbjct: 212 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHED 271
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363
A+KAV+ E++G+ L V A+ + ++
Sbjct: 272 AVKAVEALNDSELNGEKLYVGRAQKKNER 300
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 137/285 (48%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D GD+ ++ D E+G+SKGF FV F + AK+AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK L++ N+ T+++F+++ GP V
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD + +GF FV Y + A + + + ++ +L+G + A K+
Sbjct: 247 -SASLEKDAD--GKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 301
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H A Q L+VKN+ D+ EK++E F +G +T + ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L + P G + ++M+ E+G+SKGF FV F + E A KAI
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAI 379
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 380 TEKNQQIVAGKPLYVAIAQRKD 401
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 131/274 (47%), Gaps = 21/274 (7%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK---E 159
P S +++G L KD +E L +L +G V +R+ +D + S G+A+V++ S +
Sbjct: 19 PLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQ 78
Query: 160 FAKKAIDELHSKELKGKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVG 211
A +A++ L+ + GK +R S +FI N+ K G
Sbjct: 79 AADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAFG 138
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP-K 270
+ + ++ D S +G+ FV + + A AD + Q + K++G I + P +
Sbjct: 139 K-ILSCKVATDANGVS--KGYGFVHFEDQAAADRAIQTVNQK--KIEGK---IVYVAPFQ 190
Query: 271 STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHY 329
D A + ++VKN+P + +++ ++ HGE+T VVM K G + FGFI++
Sbjct: 191 KRADRPRARTLYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGFGFINF 250
Query: 330 AERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363
+ SA K V+ + E+ G+ L A+ +T++
Sbjct: 251 KDAESAAKCVEYLNEREMSGKTLYAGRAQKKTER 284
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 143/342 (41%), Gaps = 45/342 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G + ++ D +G SKG+ FV F + A +AI +
Sbjct: 116 IFIKNLDKTIDAKALHDTFSAFGKILSCKVATD-ANGVSKGYGFVHFEDQAAADRAIQTV 174
Query: 169 HSKELKGKTIRCSLSETK----------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
+ K+++GK + + + + +F+ N+P + +DE K+ + G + +
Sbjct: 175 NQKKIEGKIVYVAPFQKRADRPRARTLYTNVFVKNLPADIGDDELGKMATEHGE-ITSAV 233
Query: 219 LIKDPQNPSRNRGFSFVLYYNN----ACADYSRQKMLNANFKLDGNT--PTISWADPKST 272
++KD + S+ GF F+ + + C +Y ++ ++ G T A +
Sbjct: 234 VMKDDKGGSK--GFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQK 291
Query: 273 PDHSAAASQVKA----LYVKNIPDN-TSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGF 326
+ S +K LYVKN+ D + ++ELF G +T VM G + FGF
Sbjct: 292 AEESKQERYLKYQSMNLYVKNLSDEEVDDDALRELFANSGTITSCKVMKDGSGKSKGFGF 351
Query: 327 IHYAERSSALKA-VKDTEKYEIDGQVLEVVLAKPQTDKKT---EGTFPYSPGLVPTHLP- 381
+ + A + V + + G+ L V LA+ + ++ E G+ P
Sbjct: 352 VCFTSHDEATRPPVTEMNGKMVKGKPLYVALAQRKDVRRATQLEANMQARMGMGAMSRPP 411
Query: 382 --HAGYGGFAGT-PYGSVGTGFGVAAGFQQPMIYGRGPMPSG 420
AG + G P+ + G G G+AAG P G
Sbjct: 412 NPMAGMSPYPGAMPFFAPGPG-GMAAG----------PRAPG 442
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 132/273 (48%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 46 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 105
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 106 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 165
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + S D +
Sbjct: 166 CKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 221
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +Y+KNI + + E+ +ELF++ GE+T + + GK R FGF++++
Sbjct: 222 FEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHE 281
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV + + EI Q L V A+ + +++ E
Sbjct: 282 SAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEE 314
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 91 DEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF 150
+KD+ ++ + N + V+I + +D +EE+ R+L E G++ L +D+E G+S+GF
Sbjct: 214 SKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGF 272
Query: 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV+F + E A+ A+DE++ KE++ + +L++G K E+E RK E
Sbjct: 273 GFVNFSTHESAQAAVDEMNEKEIRTQ-----------KLYVGRAQKKHEREEELRKQYE 320
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
G+SKGF FV F S + A KA+ E++ + + GK + +L++ K+
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKD 472
>gi|255556436|ref|XP_002519252.1| Flowering time control protein FCA, putative [Ricinus communis]
gi|223541567|gb|EEF43116.1| Flowering time control protein FCA, putative [Ricinus communis]
Length = 811
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 96/177 (54%), Gaps = 17/177 (9%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+++F+G +P+ ASEED+R L E G+V EV L+KDK +G+ +G FV + + E A +AI
Sbjct: 161 AKLFVGSVPRTASEEDIRPLFEQHGNVIEVALIKDKRTGQQQGCCFVKYATSEEADRAIR 220
Query: 167 ELHSKELKGKTI-----------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
LH++ I R L + +LF+G++ K TE E ++ G VE
Sbjct: 221 ALHNQHTLPGGIGPIQVRFADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYG-HVE 279
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPK 270
+ L++D ++RG FV Y + A + LN +K+ G + P T+ +ADPK
Sbjct: 280 DVYLMRDEMK--QSRGCGFVKYSSREMA-LAAINALNGIYKMRGCDQPLTVRFADPK 333
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 114/265 (43%), Gaps = 18/265 (6%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LF+G+VP+ +E++ R + E G +E + LIKD + + +G FV Y + AD +
Sbjct: 162 KLFVGSVPRTASEEDIRPLFEQHGNVIE-VALIKDKRT-GQQQGCCFVKYATSEEADRAI 219
Query: 248 QKMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
+ + N + G P + +AD + A + K L+V ++ + ++++E+F +
Sbjct: 220 RALHNQHTLPGGIGPIQVRFADGE---RERLGAVEYK-LFVGSLNKQATEKEVEEIFSPY 275
Query: 307 GEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEK-YEIDG--QVLEVVLAKPQTD 362
G V V +M R GF+ Y+ R AL A+ Y++ G Q L V A P+
Sbjct: 276 GHVEDVYLMRDEMKQSRGCGFVKYSSREMALAAINALNGIYKMRGCDQPLTVRFADPKRP 335
Query: 363 KKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMH 422
+ + G+G P + FG A G + P R P M
Sbjct: 336 RPGDSR-------GGPAFGGPGFGPRFQAPGPRLPPNFGDAVGDRVPPSAWRPMSPQDMG 388
Query: 423 MVPMVLPDGQIGYVLQQPGVQMPPP 447
P G ++ +PG PP
Sbjct: 389 PSPNAAIHGFGSQLIPRPGELAAPP 413
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 271 STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFG--FIH 328
++PDH+ S K L+V ++P S E I+ LF++HG V +V + K + G F+
Sbjct: 150 NSPDHTECGSFAK-LFVGSVPRTASEEDIRPLFEQHGNVIEVALIKDKRTGQQQGCCFVK 208
Query: 329 YAERSSALKAVK 340
YA A +A++
Sbjct: 209 YATSEEADRAIR 220
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 131/277 (47%), Gaps = 22/277 (7%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
PN + +++G L +E L +L IG V +R+ +D + S G+A+V++ S ++
Sbjct: 52 PNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSAADGER 111
Query: 164 AIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A++EL+ +KGK R S+ + +FI N+ G +
Sbjct: 112 ALEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 170
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPD 274
+ ++ D S +G+ FV Y +D + Q + + N L+ + PK D
Sbjct: 171 SCKVAVDEHGNS--KGYGFVHY---ETSDAANQAIKSVNGMLLNEKKVFVGHHIPKK--D 223
Query: 275 HSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHY 329
+ ++KA +YVKNI T+ ++ +ELF+++G++T + GK R FGF+++
Sbjct: 224 RMSKFEEMKANFTNIYVKNIDAETTDDEFRELFEKYGQITSASLAHDDQGKVRGFGFVNF 283
Query: 330 AERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A KAV + + GQ L V A+ + +++ E
Sbjct: 284 IRHEDAAKAVDELNDLDFKGQKLYVGRAQKKHEREEE 320
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 99/228 (43%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ D E G SKG+ FV + + + A +AI +
Sbjct: 145 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAVD-EHGNSKGYGFVHYETSDAANQAIKSV 203
Query: 169 HSKELKGKTI----------RCS----LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + R S + +++ N+ T+DEFR++ E G +
Sbjct: 204 NGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDAETTDDEFRELFEKYGQ-I 262
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L D Q + RGF FV + + A + ++ + +FK G + A K
Sbjct: 263 TSASLAHDDQ--GKVRGFGFVNFIRHEDAAKAVDELNDLDFK--GQKLYVGRAQKKHERE 318
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
+ +A Q LYVKN+ D E+++++F+ +G +T
Sbjct: 319 EELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDEELRKIFEPYGAIT 366
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 74/155 (47%), Gaps = 26/155 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + + ++++ R+L E G + L D + G+ +GF
Sbjct: 221 KKDRMSKFEEMKANFTNIYVKNIDAETTDDEFRELFEKYGQITSASLAHD-DQGKVRGFG 279
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV+F E A KA+DEL+ + KG+ + ++ K+
Sbjct: 280 FVNFIRHEDAAKAVDELNDLDFKGQKLYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGV 339
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L++ N+ ++E RK+ E G + + ++++D
Sbjct: 340 NLYVKNLADEIDDEELRKIFEPYG-AITSAKVMRD 373
>gi|298709522|emb|CBJ48537.1| conserved unknown protein (Partial) [Ectocarpus siliculosus]
Length = 579
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 127/302 (42%), Gaps = 54/302 (17%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDK-ESGESKGFAFVSFRSKEFA 161
P+G E+FI LP A+EE ++ + E G +V +R+M K E + G A V F++++ A
Sbjct: 247 PSGKEIFIDNLPPSATEETVKKVAEEQGGEVVSMRVMMTKDEEPKCAGLALVRFQNRDHA 306
Query: 162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTE--------------------- 200
+A++ L +++ + S N LFIGN+ K WT+
Sbjct: 307 ARALERLPEIKMESNKLEARSSSNANTLFIGNLNKTWTKMDKQLLTARPSGNPNTLFIGG 366
Query: 201 -----------DEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249
EF K ++ G+ E+ D N + NRGF F + + + K
Sbjct: 367 LNRTWKKETVLKEFEKEVD----GIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAK 422
Query: 250 MLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309
+ N I WA+ + + +Y+ + + +++ F +G +
Sbjct: 423 YYKDKLTILENKVLIDWAETRGNKQDDE-----RGVYITGLDEKVDEAGLRKHFGSYGTI 477
Query: 310 TKVVM--PPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQV---------LEVVLAK 358
KVV+ G + ++DF I+Y+ +A ++ + G++ LEV +AK
Sbjct: 478 VKVVVGNQVGTAQRKDFAIINYSAAEAAKTCIESMHGTDFMGKLTVTSPAGRKLEVTMAK 537
Query: 359 PQ 360
+
Sbjct: 538 SK 539
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 137/273 (50%), Gaps = 21/273 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 128
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q +G++FV + N + AD + ++M N KL K+ D A
Sbjct: 129 VMSDDQGS---KGYAFVHFQNQSAADRAIEEM---NGKLLKGCKVFV-GRFKNRKDREAE 181
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ +
Sbjct: 182 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 241
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A KAV++ +I+GQ++ V A+ + +++ E
Sbjct: 242 AAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 274
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 127/298 (42%), Gaps = 54/298 (18%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LKG + R SE N ++I N + ++ + V G
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-VYIKNFGGDMDDERLKDVFSKYGKT 216
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--S 271
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 217 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 271
Query: 272 TPDHSAAASQVK----------ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
+ Q+K LY+KN+ D EK++ F G +++V + +
Sbjct: 272 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 331
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTH 379
+ FG I ++ A KA+ E++G++L G+ P S L H
Sbjct: 332 KGFGLICFSSPEDATKAMT-----EMNGRIL--------------GSKPLSIALAQRH 370
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + V+I D +E L+D+ G V++M D SG+SKG
Sbjct: 173 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 291
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ R G +I +K Q +++GF + +
Sbjct: 292 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 339
>gi|322800628|gb|EFZ21595.1| hypothetical protein SINV_12441 [Solenopsis invicta]
Length = 265
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 76/110 (69%), Gaps = 4/110 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D SG ++G+AF++F ++E A+
Sbjct: 156 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQ 215
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
+A+ EL + E+K GK+++ ++S RLF+GN+PK+ ++E ++E+ G
Sbjct: 216 QAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEE---ILEEFG 262
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
++ IP + +++ LF++ G++ +++M P R + FI + R +A +AV++
Sbjct: 162 VFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQQAVREL 221
Query: 343 EKYEID-GQVLEVVLAKPQTDKKTEGTFPYSPG 374
+ +EI G+ L+V ++ P + G P S G
Sbjct: 222 DNHEIKPGKSLKVNISVPNL-RLFVGNIPKSKG 253
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 138/273 (50%), Gaps = 21/273 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 128
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q +G++FV + N + AD + ++M N KL + K+ D A
Sbjct: 129 VMSDDQGS---KGYAFVHFQNQSAADRAIEEM---NGKLLKGCK-VFVGRFKNRKDREAE 181
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ +
Sbjct: 182 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 241
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A KAV++ +I+GQ++ V A+ + +++ E
Sbjct: 242 AAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 274
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 121/271 (44%), Gaps = 40/271 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LKG + R SE N ++I N + ++ + V G
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-VYIKNFGGDMDDERLKDVFSKYGKT 216
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--S 271
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 217 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 271
Query: 272 TPDHSAAASQVK----------ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
+ Q+K LY+KN+ D EK++ F G +++V + +
Sbjct: 272 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 331
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352
+ FG I ++ A KA+ E++G++L
Sbjct: 332 KGFGLICFSSPEDATKAMT-----EMNGRIL 357
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + V+I D +E L+D+ G V++M D SG+SKG
Sbjct: 173 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 291
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ R G +I +K Q +++GF + +
Sbjct: 292 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 339
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 140/276 (50%), Gaps = 13/276 (4%)
Query: 100 LALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
+A + +++G L D +E+ L G V +R+ +D+ + S G+A+V+F
Sbjct: 3 VAAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLT 62
Query: 160 FAKKAIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVE 215
A+KA+D ++ +KGK+IR S+ L IGNV KN + K + + G
Sbjct: 63 DAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFG 122
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
I K + ++G++FV + N + AD + ++M N KL + + K+ D
Sbjct: 123 KILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEM---NGKL-LKSCKVFVGRFKNRKDR 178
Query: 276 SA----AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYA 330
A AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ +
Sbjct: 179 EAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFD 238
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A KAV++ +I+GQ++ V A+ + +++ E
Sbjct: 239 SHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 274
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + ++I D +E L+D+ G V++M D SG+SKG
Sbjct: 173 KNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQ 291
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L++ N+ +++ R G +I +K Q +++GF F+ +
Sbjct: 292 GVKLYVKNLDDTIDDEKLRNEFSSFG----SIIRVKVMQQEGQSKGFGFICF 339
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 121/278 (43%), Gaps = 35/278 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LK + R SE N ++I N + ++ + V G
Sbjct: 158 NGKLLKSCKVFVGRFKNRKDREAELRSKASEFTN-IYIKNFGGDMDDERLKDVFSKYGKT 216
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--S 271
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 217 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 271
Query: 272 TPDHSAAASQVK----------ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
+ Q+K LYVKN+ D EK++ F G + +V + +
Sbjct: 272 QAELKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQQEGQS 331
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359
+ FGFI ++ A KA+ + + + + + LA+
Sbjct: 332 KGFGFICFSSLEDATKAMIEMNGCFLGSKPISIALAQS 369
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++++ L +E LR+ G + V++M+ + G+SKGF F+ F S E A KA+
Sbjct: 292 GVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQ--QEGQSKGFGFICFSSLEDATKAM 349
Query: 166 DELHSKELKGKTIRCSLSET 185
E++ L K I +L+++
Sbjct: 350 IEMNGCFLGSKPISIALAQS 369
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 132/275 (48%), Gaps = 16/275 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P N + +++G L +E L +L IG V +R+ +D + S G+A+V++ + +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATADGE 114
Query: 163 KAIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ L GNV KN K + D I
Sbjct: 115 KALEELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 174
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHS 276
K Q+ + N +G+ FV Y + A Q + + N L+ + PK D
Sbjct: 175 SCKVAQDENGNSKGYGFVHYETDEAAS---QAIKHVNGMLLNEKKVYVGHHIPKK--DRQ 229
Query: 277 AAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
+ ++KA +YVKNI + + + +ELF++ G+VT + + GK R FGF+++
Sbjct: 230 SKFEEMKANFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRGFGFVNFTT 289
Query: 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA KAV D + GQ L V A+ + +++ E
Sbjct: 290 HESASKAVDDLNGKDFHGQDLYVGRAQKKHEREEE 324
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 105/237 (44%), Gaps = 33/237 (13%)
Query: 101 ALPPNGS-EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
AL NG VFI L + L D G++ ++ +D E+G SKG+ FV + + E
Sbjct: 140 ALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDE 198
Query: 160 FAKKAIDELHSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRK 205
A +AI ++ L K + + E K +++ N+ + TED+FR+
Sbjct: 199 AASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAPDVTEDDFRE 258
Query: 206 VIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265
+ E G V + L +D + ++RGF FV + + A + + +F G +
Sbjct: 259 LFEKFGD-VTSSSLARDQE--GKSRGFGFVNFTTHESASKAVDDLNGKDFH--GQDLYVG 313
Query: 266 WADPKSTPDHSA-----AASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVT 310
A K + AA KA LY+KN+ D+ +K++++F G +T
Sbjct: 314 RAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKLRQMFSEFGPIT 370
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 137/276 (49%), Gaps = 25/276 (9%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
+ +++G L +D +E+ L +G V +R+ +D S S G+A+V+F + A+KA+
Sbjct: 9 AASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDAQKAL 68
Query: 166 DELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGP--GVE 215
D ++ ++GK+IR S+ L FI N+ K+ + + E P +
Sbjct: 69 DTMNFDLIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDN---KTLYEHFSPFGKIL 125
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
+ +++ D + RG+ FV Y + + AD + ++M N D T+ KS D
Sbjct: 126 SSKVMSDEEGS---RGYGFVHYQDQSAADRAIEEM-NGKLLRD---CTVFVDRFKSRKDR 178
Query: 276 SA----AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYA 330
A S+ +Y+KN+ DN E +K +F ++G+ V + +GK + FGF+ +
Sbjct: 179 EAELRSKTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSKGFGFVSFY 238
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A AV++ +I+GQ + V A+ + +++ E
Sbjct: 239 NHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAE 274
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 108/248 (43%), Gaps = 35/248 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + P G + ++M D+E S+G+ FV ++ + A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKILSSKVMSDEEG--SRGYGFVHYQDQSAADRAIEEM 157
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K L+ T+ R SE N ++I N+ N ++ + + G
Sbjct: 158 NGKLLRDCTVFVDRFKSRKDREAELRSKTSEFTN-VYIKNLGDNMDDEGLKNIFSKYGQT 216
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--- 270
+ +++++KD S+ GF FV +YN+ A + ++M + ++G T + A K
Sbjct: 217 L-SVKVMKDDNGKSK--GFGFVSFYNHEAARNAVEEMNGQD--INGQTIFVGRAQKKVER 271
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
A Q LY+KN+ + E ++ F G + +V +
Sbjct: 272 QAELKEKFEQMKKERIRARQAAKLYIKNLDETIDDETLRREFSSFGSICRVKVMQEAGQS 331
Query: 322 RDFGFIHY 329
+ FG I +
Sbjct: 332 KGFGLICF 339
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 84/171 (49%), Gaps = 29/171 (16%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
KD+ A+L + + V+I L + +E L+++ G V++MKD ++G+SKGF F
Sbjct: 176 KDREAELRSKTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKD-DNGKSKGFGF 234
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK------------------------NR 188
VSF + E A+ A++E++ +++ G+TI ++ K +
Sbjct: 235 VSFYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAELKEKFEQMKKERIRARQAAK 294
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYN 239
L+I N+ + ++ R+ G +I +K Q +++GF + +++
Sbjct: 295 LYIKNLDETIDDETLRREFSSFG----SICRVKVMQEAGQSKGFGLICFFS 341
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 135/276 (48%), Gaps = 19/276 (6%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 174
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 175 CKVAQDEYGNSKGYGFV-HYETAEAATNAIKHVNGMLL---NEKKVFVGHHIAKKDRQSK 230
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP----PGKSGKRDFGFIHYA 330
++KA +YVKN+ + + E+ + LF+++GE+T + GKS R FGF++++
Sbjct: 231 FEEMKANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKS--RGFGFVNFS 288
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ +A AV+ +YE+ GQ L V A+ + +++ E
Sbjct: 289 DHEAASAAVEGLNEYELKGQKLYVGRAQKKHEREEE 324
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 94/386 (24%), Positives = 158/386 (40%), Gaps = 51/386 (13%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + +D ++E+ R L E G++ L +D E+G+S+GF
Sbjct: 224 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFG 283
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIEDV 210
FV+F E A A++ L+ ELKG+ +L++G K+ E+E RK E
Sbjct: 284 FVNFSDHEAASAAVEGLNEYELKGQ-----------KLYVGRAQKKHEREEELRKQYEAA 332
Query: 211 G-------PGVET-IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262
GV I+ + D + + R F Y N A R+ + + + +
Sbjct: 333 RIEKASKYQGVNLYIKNLSDDIDDEKLREL-FSSYGNITSAKVMREAISDVPADAEKDKE 391
Query: 263 TISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
K T D ++ K+ D S +K K + G+ GK
Sbjct: 392 ADKEKAKKETGDKPEDKAETKS-------DEKSEDKSKSEEKTEGKTDGAKTEKKHLGKS 444
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ FGF+ ++ A KAV + + + G+ L V LA+ + +K++
Sbjct: 445 KGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQ--------------L 490
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQ-QP 440
A V G+A F QP ++ P G LP Q G Q
Sbjct: 491 EASIQARNTIRQQQVAAAAGMAQPFMQPAVFYGAPGQQGF------LPGAQRGMQFAGQA 544
Query: 441 GVQMP-PPRPRRVDRSNGPGGRGGRG 465
G+ MP P R + PG +GGRG
Sbjct: 545 GMVMPGMPGGRPGQFAQFPGQQGGRG 570
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 129/269 (47%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L D +E L ++ PIG + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 74 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 133
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S L +GN+ KN K + D +I K
Sbjct: 134 TMNFEMIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 193
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST----PDHSAA 278
N +RGF FV + + A QK +N + N + KS + A
Sbjct: 194 VYNEHGSRGFGFVHFETHEAA----QKAINTMNGMLLNDRKVFVGHFKSRQKREAELGAR 249
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A +YVKN+ + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 250 ALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQK 309
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ GQ+L V A+ + ++++E
Sbjct: 310 AVDHMNGKEVRGQLLYVGRAQKRAERQSE 338
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 125/289 (43%), Gaps = 33/289 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + +++ ++ S+GF FV F + E A+KAI+ +
Sbjct: 164 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 221
Query: 169 HSKELKGKTIRCSLSETKNR--------------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ + +++ N+ + E + + G +
Sbjct: 222 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGK-M 280
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--T 272
+++++++D SR GF FV + + A + M + G + A ++
Sbjct: 281 QSVKVMRDSNGQSR--GFGFVNFEKHEEAQKAVDHMNGKEVR--GQLLYVGRAQKRAERQ 336
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR 322
+ QVK LYVKN+ D+ + E++KE+F +G +T + S +
Sbjct: 337 SELKRRFEQVKQERQNRYQGVNLYVKNLDDSINDERLKEVFSAYGVITSAKVMTESSHSK 396
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 397 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 445
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ + + A+L A + V++ L D E+ L+DL G + V++M+D +G+S+G
Sbjct: 237 KSRQKREAELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRD-SNGQSRG 295
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL--------SETKNR------------- 188
F FV+F E A+KA+D ++ KE++G+ + SE K R
Sbjct: 296 FGFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQ 355
Query: 189 ---LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ + ++ ++V G I K S ++GF FV +
Sbjct: 356 GVNLYVKNLDDSINDERLKEVFSAYG----VITSAKVMTESSHSKGFGFVCF 403
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 68/148 (45%), Gaps = 10/148 (6%)
Query: 39 GDGNFEENDDDEEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQ 98
G NFE++++ ++ G + Q R E ++ V ++ ++++
Sbjct: 297 GFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRY-- 354
Query: 99 LLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK 158
G +++ L ++E L+++ G + ++M ES SKGF FV F S
Sbjct: 355 ------QGVNLYVKNLDDSINDERLKEVFSAYGVITSAKVMT--ESSHSKGFGFVCFSSP 406
Query: 159 EFAKKAIDELHSKELKGKTIRCSLSETK 186
E A KA+ E++ + + K + +L++ K
Sbjct: 407 EEATKAVTEMNGRIVGTKPLYVALAQRK 434
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 131/269 (48%), Gaps = 11/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 12 ASLYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 71
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GNV KN + K I D I K
Sbjct: 72 TMNFDTIKGKPMRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAIYDTFSAFGNILSCKV 131
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
Q+ + ++GF FV + AD + K+ L+G + P+S + +Q
Sbjct: 132 AQDETGSSKGFGFVHFETQEAADEAMAKV--NGMMLNGKKVYVGRFVPRSERLAAMGEAQ 189
Query: 282 VKA--LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKA 338
+ +YVKN D +K+++ F+++G+V VM R FGF+ Y E SA KA
Sbjct: 190 KRFTNIYVKNFGDKWDDDKLRDFFEKYGKVVSAKVMTDDMGHSRGFGFVSYEEPDSAGKA 249
Query: 339 VKDTEKYEI-DGQVLEVVLAKPQTDKKTE 366
++ E+ DG+ + V A+ + +++ E
Sbjct: 250 CEEMNDMEVDDGRRIYVGRAQKKAERQAE 278
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 131/301 (43%), Gaps = 35/301 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + + D G++ ++ +D E+G SKGF FV F ++E A +A+ ++
Sbjct: 102 VFIKNLDKSIDNKAIYDTFSAFGNILSCKVAQD-ETGSSKGFGFVHFETQEAADEAMAKV 160
Query: 169 HSKELKGKTI-----------RCSLSETKNR---LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK + ++ E + R +++ N W +D+ R E G V
Sbjct: 161 NGMMLNGKKVYVGRFVPRSERLAAMGEAQKRFTNIYVKNFGDKWDDDKLRDFFEKYGKVV 220
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--T 272
+ D +RGF FV Y A + ++M + DG + A K+
Sbjct: 221 SAKVMTDDM---GHSRGFGFVSYEEPDSAGKACEEMNDMEVD-DGRRIYVGRAQKKAERQ 276
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ A ++K LYVKN+ E +++ F + G +T KV+ G+S
Sbjct: 277 AELKAKFEKIKQERIQRYQGVNLYVKNLDSTIDEEILRKEFSQFGTITSSKVMTENGRS- 335
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + D+K + Y + +
Sbjct: 336 -KGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQRKEDRKAQLASQYMQRMAGMRM 394
Query: 381 P 381
P
Sbjct: 395 P 395
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 129/275 (46%), Gaps = 20/275 (7%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L + +E L D+ P+G + +R+ +D + S G+A+V++ E KKA
Sbjct: 48 NNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKA 107
Query: 165 IDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
I EL+ E+ G+ R SE +FI N+ + G +
Sbjct: 108 IQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSC 167
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276
+ + N +RGF FV + + A + + + ++G ++ PK D
Sbjct: 168 KVALDENGN---SRGFGFVHFKEESDAKDAIEAV--NGMLMNGLEVYVAMHVPKK--DRI 220
Query: 277 AAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
+ + KA +YVKNI T+ E+ ++LF ++GE+ + GK + FGF+++ +
Sbjct: 221 SKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVD 280
Query: 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
++A KAV++ E Q L V A+ + ++ E
Sbjct: 281 HNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEE 315
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 126/285 (44%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L + G+V ++ D E+G S+GF FV F+ + AK AI+ +
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAV 198
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ + G + + L E K +++ N+ T++EF ++ G V
Sbjct: 199 NGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIV 258
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L KD + + +GF FV + ++ A + +++ FK + A K
Sbjct: 259 -SAALEKDAE--GKPKGFGFVNFVDHNAAAKAVEELNGKEFK--SQALYVGRAQKKYERA 313
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
A Q L++KN+ D+ EK+KE F +G +T VM +
Sbjct: 314 EELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNS 373
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++
Sbjct: 374 KGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRSQ 418
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L +E L++ P G + R+M+D+E G SKGF FV F S E A KA+
Sbjct: 333 GVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQE-GNSKGFGFVCFSSPEEATKAM 391
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 392 TEKNQQIVAGKPLYVAIAQRKD 413
>gi|115477046|ref|NP_001062119.1| Os08g0492100 [Oryza sativa Japonica Group]
gi|42408771|dbj|BAD10006.1| putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|113624088|dbj|BAF24033.1| Os08g0492100 [Oryza sativa Japonica Group]
gi|215765667|dbj|BAG87364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201366|gb|EEC83793.1| hypothetical protein OsI_29708 [Oryza sativa Indica Group]
gi|222640778|gb|EEE68910.1| hypothetical protein OsJ_27766 [Oryza sativa Japonica Group]
Length = 362
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 105/201 (52%), Gaps = 20/201 (9%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+GGLP+D +E D G++ + +M+DK + + +GF F+++ + + +D+
Sbjct: 24 KIFVGGLPRDTTEADFVKHFGQYGEIVDSVIMRDKHTSQPRGFGFITYSNPAVVDRVMDD 83
Query: 168 LHSKELKGKTIRCSLSETKN----------RLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
+H E GK + + K+ ++F+G +P+ TED+F+ + GP V+
Sbjct: 84 IH--EFNGKQVEIKRTIPKDSVQSKDFKTKKIFVGGLPQALTEDDFKHFFQKYGPVVDH- 140
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPK--STPD 274
++++D Q R+RGF F+++ ++ D + N N L G I A+PK S P
Sbjct: 141 QIMRDHQT-KRSRGFGFIVFSSDQVVD---DLLANGNMIDLAGAKVEIKKAEPKKSSNPP 196
Query: 275 HSAAASQVKALYVKNIPDNTS 295
S+ S ++ Y ++ ++S
Sbjct: 197 PSSHGSASRSAYGRDSRGHSS 217
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 95/366 (25%), Positives = 155/366 (42%), Gaps = 57/366 (15%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +FI L K + L D G++ ++ D SGESKG+ FV + E A AI+
Sbjct: 122 ANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATDA-SGESKGYGFVQYERDEAAHAAIE 180
Query: 167 ELHSKELKGKTIRCSLSETK------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+L+ + K + K N +F+ N+ + TED+ R++ G +
Sbjct: 181 KLNGMLMNDKKVYVGPFIRKQERDNSPGNVKFNNVFVKNLSETTTEDDLREIFGKFGT-I 239
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
++ ++++ R++ F FV + + A + Q LN K D + A KS
Sbjct: 240 TSVVVMRE--GDGRSKCFGFVNFESPDEAALAVQD-LNGK-KFDDKEWYVGRAQKKSERE 295
Query: 272 ---------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+A Q LY+KN+ D EK++ELF G +T VM
Sbjct: 296 MELKEKFEKNLQETADKYQNTNLYLKNLDDTVDDEKLRELFAEFGAITSCKVMRDSNGAS 355
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKT--EGTF------PYSP 373
R GF+ + A +A+ + + + L V LA+ + D+K + F P +P
Sbjct: 356 RGSGFVAFKSAEDASRALAEMNNKMVGSKPLYVALAQRKEDRKARLQAQFSQLRPVPMAP 415
Query: 374 ------GLVPTHLPHAGYGGFAGTP---YGSVGTGFGVAAGFQQPMIYGR---GPMPSGM 421
+ P +P G F G P + + GF GFQQP++ G PMP+
Sbjct: 416 TVGPRMAMFPPGVPGVGQQLFYGQPPPAFINPQPGF----GFQQPLMPGMRPGAPMPN-- 469
Query: 422 HMVPMV 427
M+PMV
Sbjct: 470 FMMPMV 475
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 126/274 (45%), Gaps = 22/274 (8%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
+ +++G L + L D+ IG V VR+ +D + +S G+A+V++ + A +A+
Sbjct: 33 ATSLYVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAARAL 92
Query: 166 DELHSKELKGKTIRCSLSE---------TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+ L+ + G+ IR S T N +FI N+ K+ G + +
Sbjct: 93 EMLNFTPINGRPIRIMYSNRDPSLRKSGTAN-IFIKNLDKSIDNKALYDTFCVFG-NILS 150
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT---PTISWADPKSTP 273
++ D S +G+ FV Y + A + +K LN D P I K
Sbjct: 151 CKVATDASGES--KGYGFVQYERDEAAHAAIEK-LNGMLMNDKKVYVGPFIR----KQER 203
Query: 274 DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAER 332
D+S + ++VKN+ + T+ + ++E+F + G +T VVM G + FGF+++
Sbjct: 204 DNSPGNVKFNNVFVKNLSETTTEDDLREIFGKFGTITSVVVMREGDGRSKCFGFVNFESP 263
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A AV+D + D + V A+ +++++ E
Sbjct: 264 DEAALAVQDLNGKKFDDKEWYVGRAQKKSEREME 297
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 131/272 (48%), Gaps = 14/272 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S E +KA
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 165 IDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
++EL+ +KGK R S+ + GNV KN K + D I
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 165
Query: 221 KDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K Q+ N +G+ FV +Y A A + K +N L+ + PK + +
Sbjct: 166 KVAQDELGNSKGYGFV-HYETAEAANNAIKHVNGML-LNEKKVFVGHHIPKK--ERMSKF 221
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
++KA +YVKNI + S E ++LF++HG++T + GK R FGF++Y + +
Sbjct: 222 EEMKANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEA 281
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A AV + GQ L V A+ + +++ E
Sbjct: 282 ASAAVDALNDTDFRGQKLYVGRAQKKHEREEE 313
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+K++ ++ + N + +++ + D S+ED RDL E GD+ + +D + G+S+GF
Sbjct: 214 KKERMSKFEEMKANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASIARD-DQGKSRGFG 272
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV++ E A A+D L+ + +G+ +L++G K E+E RK E
Sbjct: 273 FVNYIKHEAASAAVDALNDTDFRGQ-----------KLYVGRAQKKHEREEELRKQYE 319
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 50/132 (37%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD------------------------ 141
G ++I L D +E LRD+ P G + ++M+D
Sbjct: 331 GVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAAGSEDATDEKKDESKEESEE 390
Query: 142 --------------------------KESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175
K G+SKGF FV F + + A KA+ E++ K ++
Sbjct: 391 AKDESKEDSDDKKDEKADKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEN 450
Query: 176 KTIRCSLSETKN 187
K + +L++ K+
Sbjct: 451 KPLYVALAQRKD 462
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 134/275 (48%), Gaps = 16/275 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGE 114
Query: 163 KAIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ L GNV KN K + D I
Sbjct: 115 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 174
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHS 276
K Q+ + N +G+ FV Y + A Q + + N L+ + + PK D
Sbjct: 175 SCKVAQDENGNSKGYGFVHYETDEAA---AQAIKHVNGMLLNEKKVYVGYHIPKK--DRQ 229
Query: 277 AAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
+ ++KA +YVKNI + + E ++LF++ G+VT + + GK R FGF+++
Sbjct: 230 SKFEEMKANFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQEGKTRGFGFVNFTT 289
Query: 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A KAV++ + GQ L V A+ + +++ E
Sbjct: 290 HEAAFKAVEELNGKDFRGQDLYVGRAQKKHEREEE 324
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 81/155 (52%), Gaps = 26/155 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + D ++ED R L E GDV L +D+E G+++GF
Sbjct: 225 KKDRQSKFEEMKANFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQE-GKTRGFG 283
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV+F + E A KA++EL+ K+ +G+ + ++ K+
Sbjct: 284 FVNFTTHEAAFKAVEELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGV 343
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+I N+ + +++ R++ + GP + + ++++D
Sbjct: 344 NLYIKNLDDDVDDEKLRQMFAEFGP-ITSAKVMRD 377
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 95/430 (22%), Positives = 165/430 (38%), Gaps = 95/430 (22%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E+G SKG+ FV + + E A +AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 207
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K +++ N+ + T+++FR++ E G V
Sbjct: 208 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIAPDVTDEDFRQLFEKFG-DV 266
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L +D + + RGF FV + + A + +++ +F+ G + A K +
Sbjct: 267 TSSSLARDQE--GKTRGFGFVNFTTHEAAFKAVEELNGKDFR--GQDLYVGRAQKKHERE 322
Query: 275 HSA-----AASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
AA KA LY+KN+ D+ EK++++F G +T KV+ + G
Sbjct: 323 EELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSAKVMRDVPQEG 382
Query: 321 KRD-----------------------------------------FGFIHYAERSSALKAV 339
+ + FGF+ ++ A KAV
Sbjct: 383 EEEAKDQEKDKENQKEGEKEGESAEGAEKKTEKKSDKKLGKSKGFGFVCFSNPDDATKAV 442
Query: 340 KDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTG 399
+ + I+ + L V LA+ + +K++ L AG P +
Sbjct: 443 AEMNQRMINNKPLYVALAQRKDVRKSQLEASIQ---ARNQLRMQQAAAAAGMPQQYM--- 496
Query: 400 FGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRRVDRSNGPG 459
Q P+ Y G P +P G G QPG+ MP + R + G
Sbjct: 497 -------QPPVFYAPGQQPG-------FIPQGGRGIPFPQPGMPMPNVQGGRPGQFPGYP 542
Query: 460 GRGGRGGSSG 469
+GGR G
Sbjct: 543 QQGGRNMPQG 552
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 130/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V + + +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+V+ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKVIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 135/277 (48%), Gaps = 29/277 (10%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G LP D +E L +G V +R+ +D + S G+A+V+F A++A+D
Sbjct: 10 ASLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADAQRALD 69
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ ++G++IR S+ L FI N+ K+ + G + + +
Sbjct: 70 TMNFDVIQGQSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSVFGKILSS-K 128
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKM---LNANFKLDGNTPTISWADP-KSTPD 274
++ D Q +RG+ FV + N A AD + ++M L +F+L + P K+ D
Sbjct: 129 VMCDDQG---SRGYGFVHFQNQAAADRAIEEMNGVLLKDFRL--------FVGPFKNRRD 177
Query: 275 HSA----AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHY 329
A AS+ +Y+KN D EK+KE F +G++ V + SGK + FGF+ +
Sbjct: 178 REAELQNKASEFTNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGFVSF 237
Query: 330 AERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A +AV EI GQ + V A+ + +++ E
Sbjct: 238 DTHEAAKRAVDIVNGREIFGQQVFVGRAQKKAERQAE 274
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+++++ L + EE LR G + V++M+ E G S+GF + F S E A +A+
Sbjct: 292 GTKIYVKNLDETIDEEKLRKAFSSFGSIIRVKVMQ--EEGRSRGFGLICFSSPEEAARAM 349
Query: 166 DELHSKELKGKTIRCSLSE 184
E++ + L K + +L++
Sbjct: 350 AEMNGRLLGSKPVNIALAQ 368
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 107/411 (26%), Positives = 173/411 (42%), Gaps = 72/411 (17%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ ++ D SGES+G+ FV F E A+ AID+L
Sbjct: 125 IFIKNLDKSIDNKALYDTFCAFGNILSCKIATDP-SGESRGYGFVQFEKDESAQSAIDKL 183
Query: 169 HSKELKGKTI------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+ + K + S + + +++ N+ T+DE +++ G + +
Sbjct: 184 NGMLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGT-ITS 242
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT-ISWADPKS---- 271
+++D + ++R F FV + N AD + Q + N K+ + + A KS
Sbjct: 243 AVVMRD--SDGKSRCFGFVNFEN---ADAAAQAVQELNGKIFNDKELYVGRAQKKSEREM 297
Query: 272 --------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKR 322
A Q LY+KN+ +N EK++ELF +G +T VM R
Sbjct: 298 ELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSR 357
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPG-------- 374
GF+ + A +A+ + + + L V LA+ + D+K + +S
Sbjct: 358 GSGFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKAKLQAQFSQMRPVAMAPS 417
Query: 375 ------LVPTHLPHAGYGGFAGTP---YGSVGTGFGVAAGFQQPMIYGR---GPMPSGMH 422
+ P +P G F G P + + GF FQQP++ G GPMP+
Sbjct: 418 VGPRMPMFPPGVPGVGQQLFYGQPPPAFINPQAGF----AFQQPLMPGMRPGGPMPN--F 471
Query: 423 MVPMV-------LPDGQIGYVLQQP----GVQMPPPRPRRVDRSNGPGGRG 462
M+PMV P G+ +QQP G Q PR R R P GRG
Sbjct: 472 MMPMVQQGQQPQRPAGRRAGGMQQPMPMGGQQQVFPRGGRGYRY--PTGRG 520
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 129/272 (47%), Gaps = 18/272 (6%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
+ +++G L + + L D+ +G V VR+ +D S +S G+A+V++ ++ A +A+
Sbjct: 34 ATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARAL 93
Query: 166 DELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
+ L+ + GK IR S +FI N+ K+ G + +
Sbjct: 94 ELLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFG-NILSC 152
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
++ DP S RG+ FV + + A + K LN D + + D
Sbjct: 153 KIATDPSGES--RGYGFVQFEKDESAQSAIDK-LNGMLINDKKVFVGPFVRKQ---DREN 206
Query: 278 AASQVK--ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+S +K +YVKN+ D + +++KE+F ++G +T V+ GK R FGF+++ +
Sbjct: 207 VSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADA 266
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A +AV++ + + L V A+ +++++ E
Sbjct: 267 AAQAVQELNGKIFNDKELYVGRAQKKSEREME 298
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 94 DKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFV 153
+K+ Q +A + +++ L ++ +E LR+L G++ ++M+D +G S+G FV
Sbjct: 304 EKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRD-SNGVSRGSGFV 362
Query: 154 SFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
+F+S E A +A+ E++ K + K + +L++ K
Sbjct: 363 AFKSAEDANRALTEMNGKMVGSKPLYVALAQRK 395
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 126/274 (45%), Gaps = 22/274 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E K AI+
Sbjct: 43 ASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIE 102
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
+L+ +KG+ R S+ +FI N+ + + G + + +
Sbjct: 103 KLNYTAIKGRPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKTLYETFSVFG-NILSCK 161
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGN----TPTISWADPKSTP 273
+ D +++GF FV + N A R+ + N L+G P +S D +S
Sbjct: 162 IAND--ETGKSKGFGFVHFENEEAA---REAIDAINGMLLNGQEVYVAPHVSKKDRQSKL 216
Query: 274 DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
D A + +YVKN+ + E + LF+ +G +T V + GK R FGF+ +
Sbjct: 217 DE--ARANFTNVYVKNLDLEATEEDFENLFKPYGTITSVALEKDAEGKSRGFGFVDFENH 274
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A+KAV+ E GQ L V A+ + ++ E
Sbjct: 275 EDAVKAVEALNDTEYKGQTLYVGRAQKKYERLQE 308
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 90/373 (24%), Positives = 166/373 (44%), Gaps = 52/373 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L + G++ ++ D E+G+SKGF FV F ++E A++AID +
Sbjct: 133 IFIKNLHPDIDNKTLYETFSVFGNILSCKIAND-ETGKSKGFGFVHFENEEAAREAIDAI 191
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ + + L E + +++ N+ TE++F + + G +
Sbjct: 192 NGMLLNGQEVYVAPHVSKKDRQSKLDEARANFTNVYVKNLDLEATEEDFENLFKPYGT-I 250
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++ L KD + SR GF FV + N+ A + + + + +K G T + A K
Sbjct: 251 TSVALEKDAEGKSR--GFGFVDFENHEDAVKAVEALNDTEYK--GQTLYVGRAQKKYERL 306
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
++ A Q L++KN+ D+ EK+KE F G +T + ++GK
Sbjct: 307 QELKKQYQASKLEKLAKYQGINLFIKNLDDSIDDEKLKEEFAPFGTITSARVMRTENGKS 366
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ FGF+ ++ A +A+ + + + G+ L V +A+ + ++++ + +
Sbjct: 367 KGFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRKDVRRSQ---------LAQQIQ 417
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPD-GQIGYVLQQ- 439
+ + G+ F PM YG P P GM P P+ Q+G + Q
Sbjct: 418 ARNQMRYQQATAAAAAAAAGIPGQFMPPMFYGVVP-PRGM---PFNGPNPQQLGGMPPQQ 473
Query: 440 ----PGVQMPPPR 448
P MPPP+
Sbjct: 474 FRNGPAYGMPPPQ 486
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++L N + V++ L +A+EED +L +P G + V L KD E G+S+GF
Sbjct: 209 KKDRQSKLDEARANFTNVYVKNLDLEATEEDFENLFKPYGTITSVALEKDAE-GKSRGFG 267
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
FV F + E A KA++ L+ E KG+T+ ++ K
Sbjct: 268 FVDFENHEDAVKAVEALNDTEYKGQTLYVGRAQKK 302
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L +E L++ P G + R+M+ E+G+SKGF FV F + E A +AI
Sbjct: 326 GINLFIKNLDDSIDDEKLKEEFAPFGTITSARVMRT-ENGKSKGFGFVCFSTPEEATRAI 384
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 385 TEKNQQIVAGKPLYVAIAQRKD 406
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 134/274 (48%), Gaps = 15/274 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 112 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 171
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 172 CKVAQDEFGNSKGYGFV-HYETAEAATNAIKHVNGMLL---NEKKVFVGHHIAKKDRQSK 227
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK-RDFGFIHYAER 332
++KA +YVKN+ S E+ +ELF+++GE+T + G++GK R FGF+++ +
Sbjct: 228 FEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVKH 287
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV++ E GQ L V A+ + +++ E
Sbjct: 288 ESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEE 321
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 94/401 (23%), Positives = 163/401 (40%), Gaps = 88/401 (21%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ L + S E+ R+L E G++ + +D E+G+S+GF
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFG 280
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIEDV 210
FV+F E A A++EL+ KE KG+ +L++G K E+E RK E
Sbjct: 281 FVNFVKHESAAAAVEELNDKEYKGQ-----------KLYVGRAQKKHEREEELRKQHEAA 329
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
+ S+ +G + LY N D +K+ + T D
Sbjct: 330 -----------RVEKASKYQGVN--LYVKNLTDDIDDEKLRDLFISFGNITSARVMRDTA 376
Query: 271 STPDHSAAASQVKALYVKNIPDNTSTE-----------KIKELFQRHGEVTKVVMPPGKS 319
P S + + ++ +N+ D E K+++ ++ K+ GKS
Sbjct: 377 GDPG-SESEKEKESANKENVKDEAKKESGEEDSADKSDKVEKSDSKNATEKKL----GKS 431
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTH 379
+ FGF+ ++ A KAV + + ++G+ L V LA+ + +K++
Sbjct: 432 --KGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQ------------- 476
Query: 380 LPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVL-- 437
A V G++ F QP +Y P GQ G++
Sbjct: 477 -LEASIQARNTIRQQQVAAAAGMSQPFMQPAVY---------------YPPGQQGFIPAN 520
Query: 438 ----------QQPGVQ---MPPPRPRRVDRSNGPGGRGGRG 465
QQPG+ MP RP + + PG +GGRG
Sbjct: 521 AAQRGGMAFGQQPGMVIPGMPGGRPGQF-AAGFPGQQGGRG 560
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 132/266 (49%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN D+ ++KELF ++G+ V + SGK + FGF+ + + A KAV+
Sbjct: 190 FTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVE 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ +I+G+++ V A+ + +++ E
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVERQAE 275
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 133/291 (45%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + + +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ DP +++GF FV + + A+ + ++M + ++G + A K
Sbjct: 219 -SVKVMTDPS--GKSKGFGFVSFEKHEDANKAVEEMNGKD--INGKMVFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S + A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPDEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|168229272|ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus]
gi|148703238|gb|EDL35185.1| mCG12357 [Mus musculus]
Length = 370
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 135/270 (50%), Gaps = 13/270 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
+ +++G L +D +E+ L +G V +R+ +D S S G+A+V+F A+KA+
Sbjct: 9 AASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQKAL 68
Query: 166 DELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIK 221
++ +KGK+IR S+ R +GNV KN + K + + TI K
Sbjct: 69 VTMNFDVIKGKSIRLMWSQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPFGTIMSSK 128
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA-- 279
+ ++G+ FV Y + AD + ++M N KL T+ A KS D A
Sbjct: 129 VMTDGEGSKGYGFVHYQDRRAADRAIEEM---NGKL-LRESTLFVARFKSRKDREAELRD 184
Query: 280 --SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
++ +Y+KN D+ EK++E+F ++G+ V + +GK + FGF+ + +A
Sbjct: 185 KPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGFGFVSFDSHEAAK 244
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV+D +I+GQ + V A+ + +++ E
Sbjct: 245 NAVEDMNGQDINGQTIFVGRAQKKVERQAE 274
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 29/171 (16%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
KD+ A+L P + V+I D +E LR++ G V++MKD +G+SKGF F
Sbjct: 176 KDREAELRDKPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKD-ATGKSKGFGF 234
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK------------------------NR 188
VSF S E AK A+++++ +++ G+TI ++ K +
Sbjct: 235 VSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAK 294
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYN 239
L+I N+ ++ RK G +I +K Q +++GF + +++
Sbjct: 295 LYIKNLDDTIDDETLRKEFSVFG----SICRVKVMQEAGQSKGFGLICFFS 341
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 107/247 (43%), Gaps = 33/247 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + P G + ++M D E SKG+ FV ++ + A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGTIMSSKVMTDGEG--SKGYGFVHYQDRRAADRAIEEM 157
Query: 169 HSKELKGKTIRCS-LSETKNR-------------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ K L+ T+ + K+R ++I N + +++ R+V G +
Sbjct: 158 NGKLLRESTLFVARFKSRKDREAELRDKPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTL 217
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++KD S+ GF FV + ++ A + + M + ++G T + A K
Sbjct: 218 -SVKVMKDATGKSK--GFGFVSFDSHEAAKNAVEDMNGQD--INGQTIFVGRAQKKVERQ 272
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR 322
A Q LY+KN+ D E +++ F G + +V + +
Sbjct: 273 AELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQEAGQSK 332
Query: 323 DFGFIHY 329
FG I +
Sbjct: 333 GFGLICF 339
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 135/305 (44%), Gaps = 37/305 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ R+ +D ESG SKG+ FV F ++E A K+ID +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCRVAQD-ESGSSKGYGFVHFETEEAANKSIDRV 159
Query: 169 HSKELKGKTIRC-----------SLSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ T+D+ +++ E G
Sbjct: 160 NGMLLNGKKVYVGKFISRKEREKELGE-KAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP 273
+ KD ++RGF FV + + AD + LN +G + A K+
Sbjct: 219 TSHKVMSKDD---GKSRGFGFVAFEDPNAADRAVAD-LNGKEIAEGKIMYVGRAQKKAER 274
Query: 274 DHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
Q+K LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 275 QQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSVKVMMEDGRS 334
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTH 379
+ FGF+ ++ A KAV + + + L V LA+ + D+K Y +
Sbjct: 335 --KGFGFVCFSLAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYLQRVANIR 392
Query: 380 LPHAG 384
+ H G
Sbjct: 393 MQHMG 397
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 134/269 (49%), Gaps = 11/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ + R +GNV KN ++ K + D I +
Sbjct: 71 TMNFDIIKGRPIRIMWSQRDPSLRRSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCRV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS--WADPKSTPDHSAAA 279
Q+ S ++G+ FV + A+ S ++ L+G + + + + A
Sbjct: 131 AQDESGSSKGYGFVHFETEEAANKSIDRV--NGMLLNGKKVYVGKFISRKEREKELGEKA 188
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALKA 338
+YVKN ++ + +K+KE+F+++G +T VM R FGF+ + + ++A +A
Sbjct: 189 KLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPNAADRA 248
Query: 339 VKDTEKYEI-DGQVLEVVLAKPQTDKKTE 366
V D EI +G+++ V A+ + +++ E
Sbjct: 249 VADLNGKEIAEGKIMYVGRAQKKAERQQE 277
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + V++M E G SKGF FV F E A KA+
Sbjct: 295 GVNLYVKNLDDTIDDERLRKEFAPFGTITSVKVM--MEDGRSKGFGFVCFSLAEEATKAV 352
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 353 TEMNGRIVGSKPLYVALAQRK 373
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 137/285 (48%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D GD+ ++ D E+G+SKGF FV F + AK+AID L
Sbjct: 17 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 75
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK L++ N+ T+++F+++ GP V
Sbjct: 76 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 135
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD + +GF FV Y + A + + + ++ +L+G + A K+
Sbjct: 136 -SASLEKDAD--GKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 190
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H A Q L+VKN+ D+ EK++E F +G +T + ++GK
Sbjct: 191 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 250
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++
Sbjct: 251 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 295
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L + P G + ++M+ E+G+SKGF FV F + E A KAI
Sbjct: 210 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAI 268
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 269 TEKNQQIVAGKPLYVAIAQRKD 290
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 151/318 (47%), Gaps = 14/318 (4%)
Query: 59 ASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDA 118
A+E +Q E+ + EE+ + + ++ + + N + +++G L
Sbjct: 3 AAETNQLQESMEKLNIGSTSEEQPAAATTTADQSAEEQGESSGVAENSASLYVGELNPSV 62
Query: 119 SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178
+E L ++ PIG V +R+ +D S +S G+A+V++ E +KAI+EL+ ++G+
Sbjct: 63 NEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYTPIEGRPC 122
Query: 179 RCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQNP-SRNRGFS 233
R S+ + R GN+ KN K + D I K + +++ F
Sbjct: 123 RIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVAADEFGQSKCFG 182
Query: 234 FVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA----LYVKN 289
FV Y A+ + + N N L N + S D + ++KA +YVKN
Sbjct: 183 FVHY---ETAEAAEAAIENVNGMLL-NDREVFVGKHISKKDRESKFEEMKANFTNIYVKN 238
Query: 290 IPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEID 348
I N S E ++LF +G++T + + + GK + FGF+++ SA+KAV++ EI+
Sbjct: 239 IDLNYSEESFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFENHDSAVKAVEELNDKEIN 298
Query: 349 GQVLEVVLAKPQTDKKTE 366
GQ + V A+ + ++ E
Sbjct: 299 GQKIYVGRAQKKRERLEE 316
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 130/285 (45%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D E G+SK F FV + + E A+ AI+ +
Sbjct: 141 IFIKNLHPAIDNKALHDTFSAFGKILSCKVAAD-EFGQSKCFGFVHYETAEAAEAAIENV 199
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK I E+K +++ N+ N++E+ F K+ G +
Sbjct: 200 NGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFAPYGK-I 258
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD +++GF FV + N+ A + +++ + +++G + A K
Sbjct: 259 TSIYLEKD--QDGKSKGFGFVNFENHDSAVKAVEELNDK--EINGQKIYVGRAQKKRERL 314
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ A Q L+VKN+ D +EK++E F+ G +T + +GK
Sbjct: 315 EELKKQYEAARLEKLAKYQGVNLFVKNLDDAIDSEKLEEEFKSFGTITSAKVMVDDAGKS 374
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ + A KA+ + I+G+ L V LA+ + ++++
Sbjct: 375 KGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQ 419
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L E L + + G + ++M D ++G+SKGF FV F + E A KAI
Sbjct: 334 GVNLFVKNLDDAIDSEKLEEEFKSFGTITSAKVMVD-DAGKSKGFGFVCFTTPEEATKAI 392
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++++ + GK + +L++ K+
Sbjct: 393 TEMNTRMINGKPLYVALAQRKD 414
>gi|242004750|ref|XP_002423241.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506227|gb|EEB10503.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 487
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 124/257 (48%), Gaps = 10/257 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP+G+E+FI LP D E +L + IG ++EVRL SG ++G+AF+ + A
Sbjct: 23 PPHGTEIFIKNLPDDVFEIELFQIFSTIGRIYEVRL-PVHWSGINRGYAFIRYTKISEAD 81
Query: 163 KAIDELHSKELKGK-TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI E++ K TI+ S RLF+ VP + T +E + + V V+ + +
Sbjct: 82 AAIKAFDMFEIRNKRTIKIERSVDNTRLFLSCVPNDKTSEEIQCDLLTVVDNVKKVYVYP 141
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKML-NANFKLDGNTPTISWADPKSTPDHSAAAS 280
+NPS RG++FV + ++ A +++ + + F L +WA+P + S +
Sbjct: 142 TLENPSIFRGYAFVEFKSHRDAAIAKRILTPDVCFNLFEKKCIAAWANPLPFLNESILKT 201
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
+ L+++N+P + IK++ + E + + F ++ + AL +K
Sbjct: 202 -INILFIRNVPKEIKSNTIKKIIENILEDNSLQKVKRLNNFAFLTFRNHEKAKFALNYIK 260
Query: 341 D------TEKYEIDGQV 351
D +EK +I+ V
Sbjct: 261 DHPSLLGSEKIQIEWAV 277
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 130/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 121
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 122 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 180
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + + +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 181 FTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKS--KGFGFVSYEKHEDANKA 238
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ E+ G+ + V A+ + +++ E
Sbjct: 239 VEEMNGKEMSGKAIFVGRAQKKVERQAE 266
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 133/291 (45%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 92 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 149
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + +D +++ G +
Sbjct: 150 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTL 209
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP S+ GF FV Y + A+ + ++M ++ G + A K
Sbjct: 210 -SVKVMRDPSGKSK--GFGFVSYEKHEDANKAVEEMNGK--EMSGKAIFVGRAQKKVERQ 264
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 265 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 323
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 324 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 373
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +++L++L G V++M+D SG+SKG
Sbjct: 165 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRD-PSGKSKG 223
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 224 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 283
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 284 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 331
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 132/266 (49%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN D+ ++KELF ++G+ V + SGK + FGF+ + + A KAV+
Sbjct: 190 FTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVE 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ +I+G+++ V A+ + +++ E
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVERQAE 275
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 133/291 (45%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + + +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ DP +++GF FV + + A+ + ++M + ++G + A K
Sbjct: 219 -SVKVMTDPS--GKSKGFGFVSFEKHEDANKAVEEMNGKD--INGKMVFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S + A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPDEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 95/362 (26%), Positives = 158/362 (43%), Gaps = 52/362 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ ++ D SG+SKG+ FV + S E A+KAI++L
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKVAVD-SSGQSKGYGFVQYDSDEAAQKAIEKL 175
Query: 169 HSKELKGKTIRCS---------LSETKNR---LFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+ L K + ++ K R +F+ N+ ++ E+E RK+ + G + +
Sbjct: 176 NGMLLNDKQVYVGPFVRKQERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGT-ITS 234
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS----- 271
+ ++KD SR GF + + NA D +R +KLD + A KS
Sbjct: 235 VAVMKDEDGKSRCFGF---VNFENA-EDAARAVEALNGYKLDNKDWFVGRAQKKSEREME 290
Query: 272 -------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKR 322
+ + SQ LY+KN+ D+ S +K+KELF +G +T KV+ P K
Sbjct: 291 LKHRFEQSAQEAVDKSQGLNLYLKNLDDSISDDKLKELFSPYGTITSCKVMRDPSGVSKG 350
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPG-------- 374
GF+ ++ A +A+ + + + L V LA+ + +++ +S
Sbjct: 351 S-GFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPIAMASS 409
Query: 375 ------LVPTHLPHAGYGGFAGTPYGSV---GTGFGVAAGFQQPMIYGRGPMPSGMHMVP 425
+ P P G F G P ++ GFG M G GPMP+ +P
Sbjct: 410 VAPRMPMYPPGGPGLGQQIFYGQPPPAMLPPQAGFGYQQQLVPGMRPGGGPMPN--FFMP 467
Query: 426 MV 427
MV
Sbjct: 468 MV 469
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L S++ L++L P G + ++M+D SG SKG FV+F + E A +A+
Sbjct: 308 GLNLYLKNLDDSISDDKLKELFSPYGTITSCKVMRDP-SGVSKGSGFVAFSTPEEASRAL 366
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ K + K + +L++ K
Sbjct: 367 SEMNGKMVVSKPLYVALAQRK 387
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 134/274 (48%), Gaps = 14/274 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P + + +++G L +E L +L IG V +R+ +D + S G+A+V++ + +
Sbjct: 110 PQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNATADGE 169
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 170 KALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 229
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
K Q+ + N +G+ FV Y + A + K +N L+ + + PK D +
Sbjct: 230 SCKVAQDENGNSKGYGFVHYETDEAAANAI-KHVNGML-LNEKKVYVGYHIPKK--DRQS 285
Query: 278 AASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
++KA +YVKNIP + E+ +ELF ++G+VT + GK R FGF+++
Sbjct: 286 KFEEMKANFTNVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSDEGKSRGFGFVNFTTH 345
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A KAV++ + GQ L V A+ + +++ E
Sbjct: 346 EAASKAVEELNGKDFRGQELYVGRAQKKHEREEE 379
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 99/423 (23%), Positives = 163/423 (38%), Gaps = 90/423 (21%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E+G SKG+ FV + + E A AI +
Sbjct: 204 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAANAIKHV 262
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K +++ N+P T++EFR++ G V
Sbjct: 263 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIPAEVTDEEFRELFAKYG-DV 321
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L + + ++RGF FV + + A + +++ +F+ G + A K +
Sbjct: 322 TSSSLARS--DEGKSRGFGFVNFTTHEAASKAVEELNGKDFR--GQELYVGRAQKKHERE 377
Query: 275 HSA-----AASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPG---- 317
AA Q KA LY+KN+ D+ +K++++F +G +T VM
Sbjct: 378 EELRRSYEAARQEKANKYQGVNLYIKNLGDDVDDDKLRQMFSEYGPITSAKVMRDSVVES 437
Query: 318 ---------------------------------KSGK-RDFGFIHYAERSSALKAVKDTE 343
K GK + FGF+ ++ A KAV +
Sbjct: 438 AAEDEKDKENKKEDEEEKEGETAEKKAETKEKRKLGKSKGFGFVCFSNPDDATKAVTEMN 497
Query: 344 KYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVA 403
+ ID + L V LA+ + +K++ L AG P +
Sbjct: 498 QRMIDNKPLYVALAQRKDVRKSQLEASIQ---ARNQLRMQQAAAQAGIPQQFM------- 547
Query: 404 AGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRRVDRSNGPGGRGG 463
QQP+ Y G P M P G G Q + +PP R G +GG
Sbjct: 548 ---QQPVYYAPGQQPGFMP------PAGGRGMPFAQGAMGIPPQGGRPGQYPPYAGQQGG 598
Query: 464 RGG 466
RGG
Sbjct: 599 RGG 601
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 131/273 (47%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILS 168
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + S D +
Sbjct: 169 CKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 224
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +Y+KNI + E+ +++F++ GE+T + + GK R FGF++++
Sbjct: 225 FEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHD 284
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV + EI GQ L V A+ + +++ E
Sbjct: 285 SAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEE 317
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 91 DEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF 150
+KD+ ++ + N + V+I + ++ ++E+ R + E G++ L +D+E G+S+GF
Sbjct: 217 SKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGF 275
Query: 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV+F + + A+ A+DE++ KE+KG+ +L++G K E+E RK E
Sbjct: 276 GFVNFSTHDSAQAAVDEMNDKEIKGQ-----------KLYVGRAQKKHEREEELRKQYE 323
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 46/128 (35%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES--------------------- 144
G +++ L D +E LR+L P G + ++M+D +
Sbjct: 335 GVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEK 394
Query: 145 -------------------------GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179
G+SKGF FV F S + A KA+ E++ + + GK +
Sbjct: 395 EGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLY 454
Query: 180 CSLSETKN 187
+L++ K+
Sbjct: 455 VALAQRKD 462
>gi|195035643|ref|XP_001989285.1| GH11642 [Drosophila grimshawi]
gi|193905285|gb|EDW04152.1| GH11642 [Drosophila grimshawi]
Length = 833
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 107/206 (51%), Gaps = 21/206 (10%)
Query: 72 DDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIG 131
DDD+ + + + GE E D P+ ++F+G +PK E LR++ E G
Sbjct: 345 DDDSCFRLDSDSAVVTYGEKEPD---------PDNIKMFVGQVPKSMDEAQLREMFEEYG 395
Query: 132 DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGKT--IRCSLSETKNR 188
V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I+ ++++NR
Sbjct: 396 PVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPIQMKPADSENR 455
Query: 189 ----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
LF+G + K E++ RK+ E G G+E +++DP S +G +FV + A
Sbjct: 456 NERKLFVGMLNKKLNENDVRKLFEVHG-GIEECTVLRDPNGQS--KGCAFVTFATKHAAI 512
Query: 245 YSRQKMLNANFKLDGNTP--TISWAD 268
+ + L+ N ++G T + +AD
Sbjct: 513 SAIKVTLSQNKIMEGCTSPLVVKFAD 538
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + E A+
Sbjct: 745 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPESAQM 804
Query: 164 AIDELHSKELKGKTIRCSLSETK 186
AI ++ ++ K ++ L + K
Sbjct: 805 AIKAMNGFQVGTKRLKVQLKKPK 827
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 131/273 (47%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILS 168
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + S D +
Sbjct: 169 CKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 224
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +Y+KNI + E+ +++F++ GE+T + + GK R FGF++++
Sbjct: 225 FEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHD 284
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV + EI GQ L V A+ + +++ E
Sbjct: 285 SAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEE 317
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 68/118 (57%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V+I + ++ ++E+ R + E G++ L +D+E G+S+GF
Sbjct: 218 KKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFG 276
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV+F + + A+ A+DE++ KE+KG+ +L++G K E+E RK E
Sbjct: 277 FVNFSTHDSAQAAVDEMNDKEIKGQ-----------KLYVGRAQKKHEREEELRKQYE 323
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 44/126 (34%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES--------------------- 144
G +++ L D +E LR+L P G + ++M+D +
Sbjct: 335 GVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEG 394
Query: 145 -----------------------GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181
G+SKGF FV F S + A KA+ E++ + + GK + +
Sbjct: 395 EEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVA 454
Query: 182 LSETKN 187
L++ K+
Sbjct: 455 LAQRKD 460
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 141/300 (47%), Gaps = 12/300 (4%)
Query: 75 TPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF 134
TP V+++ K ++ E P S +++G L D +E L + P G V
Sbjct: 2 TPTVKDKSKVVVTLPSTELSLEVFFRGHYPMAS-LYVGDLHSDVTEAMLYEKFSPAGPVL 60
Query: 135 EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLF---I 191
+R+ +D + S G+A+V+F+ A++A+D ++ +KGK IR S+ L +
Sbjct: 61 SIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGV 120
Query: 192 GNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM 250
GNV KN + K + D I K + + ++G++FV + AD + +KM
Sbjct: 121 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKM 180
Query: 251 LNANFKLDGNTPTISWADPKST-PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309
N D + K + A A + +Y+KN + + +KELF + G+
Sbjct: 181 -NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKT 239
Query: 310 TKV-VM--PPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V VM P GKS + FGF+ Y + A KAV++ E+ G+ + V A+ + +++ E
Sbjct: 240 LSVKVMRDPSGKS--KGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAE 297
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 145/325 (44%), Gaps = 47/325 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 123 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 180
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + +D +++ G +
Sbjct: 181 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTL 240
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 241 -SVKVMRDPSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EMSGKAIFVGRAQKKVERQ 295
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 296 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 354
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 355 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV----- 408
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAG 405
G P ++ + F AAG
Sbjct: 409 -----AGMRALPANAILSQFQPAAG 428
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 314 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKA 371
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 372 VTEMNGRIVGSKPLYVALAQRK 393
>gi|313236676|emb|CBY11933.1| unnamed protein product [Oikopleura dioica]
Length = 1059
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 89/152 (58%), Gaps = 17/152 (11%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P G EVF+G +P+D E+++ + E IG ++E+RLM D + G+++GF FV F + A
Sbjct: 68 IPTKGCEVFVGKIPRDLFEDEIFPVFEMIGPIYELRLMMDFD-GKNRGFCFVMFTERSHA 126
Query: 162 KKAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
++AI L++ E+ KG+T+ S RLF+G +PK+ ++E ++ V
Sbjct: 127 RQAISRLNNFEIRKGRTLGVCSSVDNCRLFVGGIPKSRKKEEIMHELKKVT--------- 177
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLN 252
++NRGF+FV Y + A +R+K+++
Sbjct: 178 ------NKNRGFAFVEYETHKAAAMARRKLVS 203
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 132/266 (49%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN D+ ++KELF ++G+ V + SGK + FGF+ + + A KAV+
Sbjct: 190 FTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVE 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ +I+G+++ V A+ + +++ E
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVERQAE 275
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 133/291 (45%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + + +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ DP +++GF FV + + A+ + ++M + ++G + A K
Sbjct: 219 -SVKVMTDPS--GKSKGFGFVSFEKHEDANKAVEEMNGKD--INGKMVFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR P G + ++M E G SKGF FV F S + A KA+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPDEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGSKPLYVALAQRK 371
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 135/276 (48%), Gaps = 19/276 (6%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 174
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 175 CKVAQDEYGNSKGYGFV-HYETAEAATNAIKHVNGMLL---NEKKVFVGHHIAKKDRQSK 230
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP----PGKSGKRDFGFIHYA 330
++KA +YVKN+ + + E+ + LF+++GE+T + GKS R FGF++++
Sbjct: 231 FEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKS--RGFGFVNFS 288
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ +A AV+ +YE+ GQ L V A+ + +++ E
Sbjct: 289 DHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEE 324
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 111/446 (24%), Positives = 182/446 (40%), Gaps = 69/446 (15%)
Query: 50 EEYDHSKAGASEKDQSAEANRNDDDTPHVE----EEEKPTASVGEDEKDKHAQLLALPPN 105
+EY +SK ++AEA N HV E+K +KD+ ++ + N
Sbjct: 180 DEYGNSKGYGFVHYETAEAATNA--IKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKAN 237
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
+ +++ + +D ++E+ R L E G++ L +D E+G+S+GF FV+F E A A+
Sbjct: 238 FTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAV 297
Query: 166 DELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIEDVG-------PGVET- 216
+ L+ ELKG+ +L++G K+ E+E RK E GV
Sbjct: 298 EALNEYELKGQ-----------KLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLY 346
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276
I+ + D + + R F Y N A R+ +++ + + + K D S
Sbjct: 347 IKNLSDDIDDEKLREL-FSSYGNITSAKVMREAIVDVPAETEKDKEADKEKAKKEGGDKS 405
Query: 277 AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSS 334
+ K+ ++ K +E + E TK P K GK + FGF+ ++
Sbjct: 406 EEKGESKS-------ESEDKSKSEEKTEGKTESTK---PEKKHLGKSKGFGFVCFSNPDE 455
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAG---- 390
A KAV + + + G+ L V LA+ + +K++ V T + H F
Sbjct: 456 ASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQ---------VSTKVIHLIRSQFTNIYQL 506
Query: 391 ---------TPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQ-QP 440
V G+A F QP ++ P G LP Q G Q
Sbjct: 507 EASIQARNTIRQQQVAAAAGMAQPFMQPAVFYGAPGQQGF------LPGAQRGMQFAGQA 560
Query: 441 GVQMP-PPRPRRVDRSNGPGGRGGRG 465
G+ MP P R PG +GGRG
Sbjct: 561 GMVMPGMPGGRPGQFPQFPGQQGGRG 586
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 142/298 (47%), Gaps = 14/298 (4%)
Query: 79 EEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL 138
E + ++SV D ++ + + N + +++G L +E L ++ PIG V +R+
Sbjct: 39 ESSDATSSSVPADSAEEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRV 98
Query: 139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV- 194
+D S +S G+A+V++ E +KAI+EL+ ++G+ R S+ + R GN+
Sbjct: 99 CRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIF 158
Query: 195 PKNWTEDEFRKVIEDVGPGVETIELIK-DPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253
KN K + D I +K + +++ F FV Y A Q + +
Sbjct: 159 IKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAA----QAAIES 214
Query: 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEV 309
+ N + S D + ++KA +YVKNI + ++ +ELF G++
Sbjct: 215 VNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKI 274
Query: 310 TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
T + + GK + FGF+++ E +A KAV++ EI+GQ + V A+ + ++ E
Sbjct: 275 TSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEE 332
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 132/285 (46%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + V++ D + G+SK F FV + ++E A+ AI+ +
Sbjct: 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 169 HS-----------KELKGKTIRCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ K + K L E K +++ N+ +TE EF ++ G +
Sbjct: 216 NGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGK-I 274
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD + +++GF FV + + A + +++ + +++G + A K
Sbjct: 275 TSIYLEKDAE--GKSKGFGFVNFEEHEAAAKAVEELNDK--EINGQKIYVGRAQKKRERT 330
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ + Q L+VKN+ + +EK++E F+ G +T + +GK
Sbjct: 331 EELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKS 390
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + ++G+ L V LA+ + ++++
Sbjct: 391 KGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQ 435
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L + E L + +P G + ++M D ++G+SKGF FV F + E A KAI
Sbjct: 350 GVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVD-DAGKSKGFGFVCFSTPEEATKAI 408
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + + GK + +L++ K+
Sbjct: 409 TEMNQRMVNGKPLYVALAQRKD 430
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 129/267 (48%), Gaps = 11/267 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L +E L + IG V +R+ +D + S G+A+V+F+S A AID
Sbjct: 32 SSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAID 91
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+ + + GK IR S+ R +GN+ KN + K + D TI K
Sbjct: 92 VLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSAKV 151
Query: 223 PQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA-S 280
+ + N +G+ FV + A+ ++ + N N ++ N + + D S +
Sbjct: 152 AMDSAGNSKGYGFVQF---ETAEAAQAAIDNVN-GMELNDKQVYVGPFQRRADRSTQGEA 207
Query: 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAV 339
+ +YVKN+ +N S EK++E F HG VT V+ + GK + FGF+ + A AV
Sbjct: 208 KFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKGFGFVCFESPEGAASAV 267
Query: 340 KDTEKYEIDGQVLEVVLAKPQTDKKTE 366
++ + Y D + V A+ + +++ E
Sbjct: 268 ENLDGYTEDEKTWVVCRAQKKAEREAE 294
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 123/280 (43%), Gaps = 42/280 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G + ++ D +G SKG+ FV F + E A+ AID +
Sbjct: 122 IFIKNLDKAIDNKALLDTFAQFGTITSAKVAMD-SAGNSKGYGFVQFETAEAAQAAIDNV 180
Query: 169 HSKELKGKTI----------RCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
+ EL K + R + E K N +++ N+ +N ++++ R+ + G V +
Sbjct: 181 NGMELNDKQVYVGPFQRRADRSTQGEAKFNNVYVKNLSENLSDEKLREKFAEHG-AVTSC 239
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP-TISWADPKSTPDHS 276
++KD + S+ GF FV + S + +A LDG T +W ++
Sbjct: 240 VIMKDEEGKSK--GFGFVCFE-------SPEGAASAVENLDGYTEDEKTWVVCRAQKKAE 290
Query: 277 AAASQVKA-----------------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGK 318
A ++KA LY+KN+ + T EK++ELF G +T VM
Sbjct: 291 REA-ELKAKFEAERRERMEKMAGANLYIKNLEEGTDDEKLRELFNEFGTITSCRVMRDAS 349
Query: 319 SGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
R F+ ++ A +AV + + + L V LA+
Sbjct: 350 GASRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQ 389
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+ ++I L + +E LR+L G + R+M+D SG S+G AFV+F S + A +A+
Sbjct: 312 GANLYIKNLEEGTDDEKLRELFNEFGTITSCRVMRDA-SGASRGSAFVAFSSPDEATRAV 370
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ K + K + +L++ K
Sbjct: 371 TEMNGKMVGAKPLYVALAQRK 391
>gi|213408421|ref|XP_002174981.1| DAZ-associated protein [Schizosaccharomyces japonicus yFS275]
gi|212003028|gb|EEB08688.1| DAZ-associated protein [Schizosaccharomyces japonicus yFS275]
Length = 453
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 132/283 (46%), Gaps = 30/283 (10%)
Query: 12 DLEEDNYMEEMDDDVEEQVE-EDPEEEGGDGNFEENDDD-----EEYDHSKAGASEKDQS 65
+L +D Y EE + E + E E+E G G EE D + + ++ S + +S
Sbjct: 10 ELFKDLYGEEKESKPEIPAKNEQLEKESGAGESEEAATDGKNAEDSREEKQSIPSPQPRS 69
Query: 66 AEANRNDDDTPHVEEEEKPTASVGEDEKDKH------AQLLALPPNGSE---VFIGGLPK 116
+A DD+ + +PTA V ++ +H AQ P E +FIGGL
Sbjct: 70 VDATSTGDDSYGARQSAEPTAPVEAPQERQHTEQKPAAQEEQQSPFNREDGKMFIGGLNW 129
Query: 117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176
+ ++E LRD E G+V + +M+D +G S+GF F++F+ + + + + H L GK
Sbjct: 130 ETTDESLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKDPKCVQVVMSKEH--HLDGK 187
Query: 177 TIRCSLS------ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRN 229
I + E ++F+G VP + TE+EFR G ++ T+ + KD P
Sbjct: 188 IIDPKRAIPREEQEKTAKMFVGGVPADCTEEEFRDFFNQFGRVLDATLMMDKDTGRP--- 244
Query: 230 RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
RGF FV + N A + + M + G + A PK++
Sbjct: 245 RGFGFVTFENEAAVENT---MSQPYITIHGKPVEVKRATPKAS 284
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 16/111 (14%)
Query: 84 PTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKE 143
P ++ +E++K A++ F+GG+P D +EE+ RD G V + LM DK+
Sbjct: 191 PKRAIPREEQEKTAKM----------FVGGVPADCTEEEFRDFFNQFGRVLDATLMMDKD 240
Query: 144 SGESKGFAFVSFRSKEFAKKAIDE----LHSK--ELKGKTIRCSLSETKNR 188
+G +GF FV+F ++ + + + +H K E+K T + S+ + +R
Sbjct: 241 TGRPRGFGFVTFENEAAVENTMSQPYITIHGKPVEVKRATPKASMRDQHDR 291
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 139/307 (45%), Gaps = 41/307 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID++
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDKV 159
Query: 169 HSKELKGKTIRC-----------SLSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ T+D+ +++ E G
Sbjct: 160 NGMLLNGKKVYVGKFIPRKEREKELGE-KAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKS 271
+IKD ++RGF FV + + D + Q +L N K +G + A K+
Sbjct: 219 TSHKVMIKDD---GKSRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKA 272
Query: 272 TPDHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
Q+K LYVKN+ D+ + E+++ F G +T KV+M G
Sbjct: 273 ERQQELKRKFEQLKLERLSRYQGVNLYVKNLDDSINDERLRREFAPFGTITSAKVMMEDG 332
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVP 377
+S + FGF+ ++ A KAV + I + L V LA+ + D+K Y L
Sbjct: 333 RS--KGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLAN 390
Query: 378 THLPHAG 384
+ G
Sbjct: 391 MRMQQMG 397
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 131/269 (48%), Gaps = 11/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
Q+ S ++G+ FV + A+ S K+ L+G + P+ + A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDKV--NGMLLNGKKVYVGKFIPRKEREKELGEKA 188
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALKA 338
+YVKN ++ + +K+KE+F+++G +T VM R FGF+ + + +A +A
Sbjct: 189 KLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQA 248
Query: 339 VKDTEKYEI-DGQVLEVVLAKPQTDKKTE 366
V + E+ +G+ + V A+ + +++ E
Sbjct: 249 VLELNGKEVAEGKCMYVGRAQKKAERQQE 277
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 295 GVNLYVKNLDDSINDERLRREFAPFGTITSAKVM--MEDGRSKGFGFVCFSAPEEATKAV 352
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 353 TEMNGRIIVTKPLYVALAQRK 373
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 134/275 (48%), Gaps = 16/275 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGE 114
Query: 163 KAIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ L GNV KN K + D I
Sbjct: 115 KALEELNYTPIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 174
Query: 219 LIKDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHS 276
K Q+ + ++G+ FV Y + A Q + + N L+ + + PK D
Sbjct: 175 SCKVAQDETGASKGYGFVHYETDEAA---AQAIKHVNGMLLNEKKVYVGYHIPKK--DRQ 229
Query: 277 AAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
+ ++KA +YVKNI + + + +ELF+++G+VT + + GK R FGF+++
Sbjct: 230 SKFEEMKANFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKSRGFGFVNFTT 289
Query: 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A KAV + + GQ L V A+ + +++ E
Sbjct: 290 HEAAYKAVDELNGNDFRGQELYVGRAQKKHEREEE 324
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 80/155 (51%), Gaps = 26/155 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + D ++ + R+L E GDV L +D+E G+S+GF
Sbjct: 225 KKDRQSKFEEMKANFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQE-GKSRGFG 283
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV+F + E A KA+DEL+ + +G+ + ++ K+
Sbjct: 284 FVNFTTHEAAYKAVDELNGNDFRGQELYVGRAQKKHEREEELRKSYEAARLEKASKYQGV 343
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+I N+ + +D+ R++ + GP + + ++++D
Sbjct: 344 NLYIKNLDDDVDDDKLRQMFSEFGP-ITSAKVMRD 377
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 100/228 (43%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E+G SKG+ FV + + E A +AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ETGASKGYGFVHYETDEAAAQAIKHV 207
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K +++ N+ + T++EFR++ E G V
Sbjct: 208 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNISPDVTDNEFRELFEKYG-DV 266
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L +D + ++RGF FV + + A Y LN N G + A K +
Sbjct: 267 TSSSLARDQE--GKSRGFGFVNFTTHEAA-YKAVDELNGN-DFRGQELYVGRAQKKHERE 322
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
A+ Q LY+KN+ D+ +K++++F G +T
Sbjct: 323 EELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDDKLRQMFSEFGPIT 370
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 135/275 (49%), Gaps = 19/275 (6%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S + +KA
Sbjct: 55 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSDDGEKA 114
Query: 165 IDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
++EL+ +KGK R S+ + GNV KN K + D I
Sbjct: 115 LEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSC 174
Query: 221 KDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K Q+ + N +G+ FV +Y A A + K +N L+ + PK D +
Sbjct: 175 KVAQDENGNSKGYGFV-HYETAEAANNAIKAVNGML-LNEKKVFVGHHIPKK--DRMSKF 230
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP----PGKSGKRDFGFIHYAE 331
++KA +YVKNI + ++ +ELF+++G++T + GKS R FGF+++ +
Sbjct: 231 EEMKANFTNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKS--RGFGFVNFVK 288
Query: 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA KAV + + GQ L V A+ + +++ E
Sbjct: 289 HESAAKAVDELNDKDWKGQKLYVGRAQKKHEREEE 323
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 12/118 (10%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + + ++++ R+L E G + L D E+G+S+GF
Sbjct: 223 KKDRMSKFEEMKANFTNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRGFG 282
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV+F E A KA+DEL+ K+ KG+ +L++G K E+E RK E
Sbjct: 283 FVNFVKHESAAKAVDELNDKDWKGQ-----------KLYVGRAQKKHEREEELRKQYE 329
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 131/272 (48%), Gaps = 14/272 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S E +KA
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 165 IDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
++EL+ +KGK R S+ + GNV KN K + D I
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 165
Query: 221 KDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K Q+ N +G+ FV +Y A A + K +N L+ + PK + +
Sbjct: 166 KVAQDELGNSKGYGFV-HYETAEAANNAIKHVNGML-LNEKKVFVGHHIPKK--ERMSKF 221
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
++KA +YVKNI + S + ++LF++HG++T + GK R FGF++Y + +
Sbjct: 222 EEMKANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEA 281
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A AV + GQ L V A+ + +++ E
Sbjct: 282 ASAAVDALNDTDFRGQKLYVGRAQKKHEREEE 313
Score = 38.5 bits (88), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 53/135 (39%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD------------------------ 141
G ++I L D +E LRD+ P G + ++M+D
Sbjct: 331 GVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAAGSEDATDEKKDETKEETEK 390
Query: 142 -----------------------------KESGESKGFAFVSFRSKEFAKKAIDELHSKE 172
K G+SKGF FV F + + A KA+ E++ K
Sbjct: 391 PEEAKDESKEDSDDKKDEKADKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKM 450
Query: 173 LKGKTIRCSLSETKN 187
++ K + +L++ K+
Sbjct: 451 IENKPLYVALAQRKD 465
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 138/307 (44%), Gaps = 41/307 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 169 HSKELKGKTIRC-----------SLSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ T+D+ +++ E G
Sbjct: 160 NGMLLNGKKVYVGKFIPRKEREKELGE-KAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKS 271
+IKD ++RGF FV + + D + Q +L N K +G + A K+
Sbjct: 219 TSHKVMIKDD---GKSRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKA 272
Query: 272 TPDHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
Q+K LYVKN+ D+ E++++ F G +T KV+M G
Sbjct: 273 ERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG 332
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVP 377
+S + FGF+ ++ A KAV + I + L V LA+ + D+K Y L
Sbjct: 333 RS--KGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLAN 390
Query: 378 THLPHAG 384
+ G
Sbjct: 391 MRMQQMG 397
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 131/269 (48%), Gaps = 11/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
Q+ S ++G+ FV + A+ S ++ L+G + P+ + A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRV--NGMLLNGKKVYVGKFIPRKEREKELGEKA 188
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALKA 338
+YVKN ++ + +K+KE+F+++G +T VM R FGF+ + + +A +A
Sbjct: 189 KLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQA 248
Query: 339 VKDTEKYEI-DGQVLEVVLAKPQTDKKTE 366
V + E+ +G+ + V A+ + +++ E
Sbjct: 249 VLELNGKEVAEGKCMYVGRAQKKAERQQE 277
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 295 GVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVM--MEEGRSKGFGFVCFSAPEEATKAV 352
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 353 TEMNGRIIVTKPLYVALAQRK 373
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 135/276 (48%), Gaps = 19/276 (6%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 174
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 175 CKVAQDEYGNSKGYGFV-HYETAEAATNAIKHVNGMLL---NEKKVFVGHHIAKKDRQSK 230
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP----PGKSGKRDFGFIHYA 330
++KA +YVKN+ + + E+ + LF+++GE+T + GKS R FGF++++
Sbjct: 231 FEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKS--RGFGFVNFS 288
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ +A AV+ +YE+ GQ L V A+ + +++ E
Sbjct: 289 DHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEE 324
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 107/431 (24%), Positives = 178/431 (41%), Gaps = 57/431 (13%)
Query: 50 EEYDHSKAGASEKDQSAEANRNDDDTPHVE----EEEKPTASVGEDEKDKHAQLLALPPN 105
+EY +SK ++AEA N HV E+K +KD+ ++ + N
Sbjct: 180 DEYGNSKGYGFVHYETAEAATNA--IKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKAN 237
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
+ +++ + +D ++E+ R L E G++ L +D E+G+S+GF FV+F E A A+
Sbjct: 238 FTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAV 297
Query: 166 DELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIEDVG-------PGVET- 216
+ L+ ELKG+ +L++G K+ E+E RK E GV
Sbjct: 298 EALNEYELKGQ-----------KLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLY 346
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276
I+ + D + + R F Y N A R+ +++A + + + K D S
Sbjct: 347 IKNLSDDIDDEKLREL-FSSYGNITSAKVMREAIVDAPAEAEKDKEADKEKAKKEAGDKS 405
Query: 277 AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
+ K+ D + +E+ E + K + GKS + FGF+ ++ A
Sbjct: 406 EEKGEAKS----ESEDKSKSEEKTEGKTESAKPEKKHL--GKS--KGFGFVCFSNPDEAS 457
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSV 396
KAV + + + G+ L V LA+ + +K++ A V
Sbjct: 458 KAVTEMNQRMVHGKPLYVALAQRKDVRKSQ--------------LEASIQARNTIRQQQV 503
Query: 397 GTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQ-QPGVQMP-PPRPRRVDR 454
G+A F QP ++ P G LP Q G Q G+ MP P R
Sbjct: 504 AAAAGMAQPFMQPAVFYGAPGQQGF------LPGAQRGMQFAGQAGMVMPGMPSGRPGQF 557
Query: 455 SNGPGGRGGRG 465
PG +GGRG
Sbjct: 558 PQFPGQQGGRG 568
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 159/357 (44%), Gaps = 51/357 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ ++ D SG+SKG+ FV F ++E A+KAI++L
Sbjct: 124 IFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDG-SGQSKGYGFVQFDTEEAAQKAIEKL 182
Query: 169 HSKELKGKTIRCSLSETK------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+ L K + K N +F+ N+ ++ T+DE +K + G + +
Sbjct: 183 NGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFG-TITS 241
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQ-KMLNANFKLDGNTPTISWADPKSTPDH 275
+++D +++ F FV + + D +R + LN K+D + A KS +H
Sbjct: 242 AVVMRD--GDGKSKCFGFVNF--ESTDDAARAVEALNGK-KIDDKEWYVGKAQKKSEREH 296
Query: 276 ------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKR 322
+A Q LYVKN+ D+ + EK+KELF +G +T VM R
Sbjct: 297 ELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSR 356
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPH 382
GF+ ++ A +A+ + + + L V LA+ + D++ ++ + P +P
Sbjct: 357 GSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQRKEDRRARLQAQFA-QMRPVSMPP 415
Query: 383 AGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQ 439
+ P G G G Q + YG+GP P ++P Q G+ QQ
Sbjct: 416 SVAPRMPMYPPGGPGMG--------QQIFYGQGP--------PAIIPS-QPGFGYQQ 455
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 138/307 (44%), Gaps = 41/307 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 169 HSKELKGKTIRC-----------SLSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ T+D+ +++ E G
Sbjct: 160 NGMLLNGKKVYVGKFIPRKEREKELGE-KAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKS 271
+IKD ++RGF FV + + D + Q +L N K +G + A K+
Sbjct: 219 TSHKVMIKDD---GKSRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKA 272
Query: 272 TPDHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
Q+K LYVKN+ D+ E++++ F G +T KV+M G
Sbjct: 273 ERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG 332
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVP 377
+S + FGF+ ++ A KAV + I + L V LA+ + D+K Y L
Sbjct: 333 RS--KGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLAN 390
Query: 378 THLPHAG 384
+ G
Sbjct: 391 MRMQQMG 397
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 131/269 (48%), Gaps = 11/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
Q+ S ++G+ FV + A+ S ++ L+G + P+ + A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRV--NGMLLNGKKVYVGKFIPRKEREKELGEKA 188
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALKA 338
+YVKN ++ + +K+KE+F+++G +T VM R FGF+ + + +A +A
Sbjct: 189 KLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQA 248
Query: 339 VKDTEKYEI-DGQVLEVVLAKPQTDKKTE 366
V + E+ +G+ + V A+ + +++ E
Sbjct: 249 VLELNGKEVAEGKCMYVGRAQKKAERQQE 277
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 295 GVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVM--MEEGRSKGFGFVCFSAPEEATKAV 352
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 353 TEMNGRIIVTKPLYVALAQRK 373
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 133/275 (48%), Gaps = 16/275 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P N + +++G L +E L +L IG V +R+ +D + S G+A+V++ + +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGE 114
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ + GNV KN K + D I
Sbjct: 115 KALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 174
Query: 219 LIKDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHS 276
K Q+ + ++G+ FV Y + A Q + + N L+ + PK D
Sbjct: 175 SCKVAQDETGASKGYGFVHYETDEAAS---QAIKHVNGMLLNEKKVYVGHHIPKK--DRQ 229
Query: 277 AAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
+ ++KA +YVKNI + + + ++LF+++G+VT + + GK R FGF+++
Sbjct: 230 SKFEEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTT 289
Query: 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA KAV + + GQ L V A+ + +++ E
Sbjct: 290 HESAFKAVDELNNKDFHGQDLYVGRAQKKHEREEE 324
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 155/381 (40%), Gaps = 70/381 (18%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + D +E+D R L E GDV L +D+E G+S+GF
Sbjct: 225 KKDRQSKFEEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQE-GKSRGFG 283
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIEDV 210
FV+F + E A KA+DEL++K+ G+ L++G K E+E RK
Sbjct: 284 FVNFTTHESAFKAVDELNNKDFHGQD-----------LYVGRAQKKHEREEELRK----- 327
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM--LNANF------KLDGNTP 262
E L K N+ LY N D K+ + +F K+ TP
Sbjct: 328 --SYEAARLEK------ANKYQGVNLYIKNLDDDVDDDKLREMFKDFGSITSAKVMRETP 379
Query: 263 TISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR 322
T D K + + VK S ++ KE + K GKS +
Sbjct: 380 TEGDEDKKEKDESDKENQEEVKEEVKEESKEESKDETKEGEEDKKAEKKSDKKLGKS--K 437
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE---------------- 366
FGF+ ++ A KAV + + +G+ L V LA+ + +K++
Sbjct: 438 GFGFVCFSNPDDATKAVAEMNQRMFNGKPLYVALAQRKDVRKSQLEASIQARNQLRMQQA 497
Query: 367 ---GTFP---------YSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGR 414
P ++PG P ++P G G P G++G G F P GR
Sbjct: 498 AAVAGMPQQYMQPPVYFAPGQQPGYMPQGGRG--VPFPQGAMGMPQGRPGQFPYPQQGGR 555
Query: 415 G----PMPSGMHMVPMVLPDG 431
G MP M+ +P P G
Sbjct: 556 GGVPQQMPPNMYGMPGQFPPG 576
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 138/307 (44%), Gaps = 41/307 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 169 HSKELKGKTIRC-----------SLSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ T+D+ +++ E G
Sbjct: 160 NGMLLNGKKVYVGKFIPRKEREKELGE-KAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKS 271
+IKD ++RGF FV + + D + Q +L N K +G + A K+
Sbjct: 219 TSHKVMIKDD---GKSRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKA 272
Query: 272 TPDHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
Q+K LYVKN+ D+ E++++ F G +T KV+M G
Sbjct: 273 ERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG 332
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVP 377
+S + FGF+ ++ A KAV + I + L V LA+ + D+K Y L
Sbjct: 333 RS--KGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLAN 390
Query: 378 THLPHAG 384
+ G
Sbjct: 391 MRMQQMG 397
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 131/269 (48%), Gaps = 11/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
Q+ S ++G+ FV + A+ S ++ L+G + P+ + A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRV--NGMLLNGKKVYVGKFIPRKEREKELGEKA 188
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALKA 338
+YVKN ++ + +K+KE+F+++G +T VM R FGF+ + + +A +A
Sbjct: 189 KLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQA 248
Query: 339 VKDTEKYEI-DGQVLEVVLAKPQTDKKTE 366
V + E+ +G+ + V A+ + +++ E
Sbjct: 249 VLELNGKEVAEGKCMYVGRAQKKAERQQE 277
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 295 GVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVM--MEEGRSKGFGFVCFSAPEEATKAV 352
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 353 TEMNGRIIVTKPLYVALAQRK 373
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 135/276 (48%), Gaps = 19/276 (6%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 71 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 130
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 131 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 190
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 191 CKVAQDEYGNSKGYGFV-HYETAEAATNAIKHVNGMLL---NEKKVFVGHHIAKKDRQSK 246
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP----PGKSGKRDFGFIHYA 330
++KA +YVKN+ + + E+ + LF+++GE+T + GKS R FGF++++
Sbjct: 247 FEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKS--RGFGFVNFS 304
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ +A AV+ +YE+ GQ L V A+ + +++ E
Sbjct: 305 DHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEE 340
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 97/390 (24%), Positives = 166/390 (42%), Gaps = 43/390 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + +D ++E+ R L E G++ L +D E+G+S+GF
Sbjct: 240 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFG 299
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIEDV 210
FV+F E A A++ L+ ELKG+ +L++G K+ E+E RK E
Sbjct: 300 FVNFSDHEAASAAVEALNEYELKGQ-----------KLYVGRAQKKHEREEELRKQYEAA 348
Query: 211 G-------PGVET-IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262
GV I+ + D + + R F Y N A R+ +++ + + +
Sbjct: 349 RIEKASKYQGVNLYIKNLSDDIDDEKLREL-FSSYGNITSAKVMREAIVDVPAETEKDKE 407
Query: 263 TISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR 322
K T D S + K+ D + +E+ E + K + GKS +
Sbjct: 408 ADKEKAKKETGDKSEEKGESKS----ESEDKSKSEEKTEGKTESAKPEKKHL--GKS--K 459
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGT-----FPYSPGLVP 377
FGF+ ++ A KAV + + + G+ L V LA+ + +K++ + F S +
Sbjct: 460 GFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQVSTKVIHFLRSQ-VTN 518
Query: 378 THLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVL 437
+ A V G+A F QP ++ P G LP Q G
Sbjct: 519 IYQLEASIQARNTIRQQQVAAAAGMAQPFMQPAVFYGAPGQQGF------LPGAQRGMQF 572
Query: 438 Q-QPGVQMP-PPRPRRVDRSNGPGGRGGRG 465
Q G+ MP P R PG +GGRG
Sbjct: 573 AGQAGMVMPGMPGGRPGQFPQFPGQQGGRG 602
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 135/276 (48%), Gaps = 19/276 (6%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 174
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 175 CKVAQDEYGNSKGYGFV-HYETAEAATNAIKHVNGMLL---NEKKVFVGHHIAKKDRQSK 230
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP----PGKSGKRDFGFIHYA 330
++KA +YVKN+ + + E+ + LF+++GE+T + GKS R FGF++++
Sbjct: 231 FEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKS--RGFGFVNFS 288
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ +A AV+ +YE+ GQ L V A+ + +++ E
Sbjct: 289 DHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEE 324
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 158/389 (40%), Gaps = 60/389 (15%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + +D ++E+ R L E G++ L +D E+G+S+GF
Sbjct: 224 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFG 283
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIEDV 210
FV+F E A A++ L+ ELKG+ +L++G K+ E+E RK E
Sbjct: 284 FVNFSDHEAASAAVEALNEYELKGQ-----------KLYVGRAQKKHEREEELRKQYE-- 330
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI-----S 265
IE S+ +G + LY N D +K L F GN + +
Sbjct: 331 ---AARIE------KASKYQGVN--LYIKNLSDDIDDEK-LRELFSSYGNITSAKVMREA 378
Query: 266 WADPKSTPDHSAAASQVKALYV------KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS 319
D + + A + KA K + S +K K + G+
Sbjct: 379 IVDVPAETEKGKEADKEKAKEAGDKSEEKGESKSESEDKSKSEEKSEGKTESAKPEKRHL 438
Query: 320 GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPT 378
GK + FGF+ ++ A KAV + + + G+ L V LA+ + +K++
Sbjct: 439 GKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQ------------ 486
Query: 379 HLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQ 438
A V G+A F QP ++ P G LP Q G
Sbjct: 487 --LEASIQARNTIRQQQVAAAAGMAQPFMQPAVFYGAPGQQGF------LPGAQRGMQFA 538
Query: 439 -QPGVQMP-PPRPRRVDRSNGPGGRGGRG 465
Q G+ MP P R PG +GGRG
Sbjct: 539 GQAGMVMPGMPGGRPGQFPQFPGQQGGRG 567
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 130/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + +RG+ FV + + A + + M N D + K + A A +
Sbjct: 131 VCDENGSRGYGFVHFETHEAATRAIETM-NGMLLNDRKVFVGHFKSRKEREAEVGARAIE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+Y+KN D+ ++++E+F R G+ V VM + FGF+++ + A KAV
Sbjct: 190 FTNVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKAVA 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
D EI+G++L V A+ + ++++E
Sbjct: 250 DMNGKEINGRLLYVGRAQKRLERQSE 275
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 130/327 (39%), Gaps = 63/327 (19%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ +++ D E+G S+G+ FV F + E A +AI+ +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCD-ENG-SRGYGFVHFETHEAATRAIETM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + +D R++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEVGARAIEFTNVYIKNFGDDMDDDRLREIFSRFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFV------------------------LYYNNACADYSRQKM 250
+++++ D N R++GF FV LY A RQ
Sbjct: 219 -SVKVMMD--NNGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYVGRAQKRLERQSE 275
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
L F+ Q LYVKN+ D E++++ F +G +T
Sbjct: 276 LKRKFE--------------QMKQERVNRYQGVNLYVKNLDDGIDDERLRKEFSPYGTIT 321
Query: 311 --KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGT 368
KV+ G+S + FGF+ ++ A KAV + + + L V LA+ + ++K T
Sbjct: 322 SAKVMTEGGRS--KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILT 379
Query: 369 FPYSPGLVPTH-LPHAGYGGFAGTPYG 394
Y L LP G F TP G
Sbjct: 380 NQYMQRLATMRALPGPLLGSFQ-TPSG 405
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A++ A + V+I D ++ LR++ G V++M D +G SKG
Sbjct: 174 KSRKEREAEVGARAIEFTNVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMD-NNGRSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK-------------------NR-- 188
F FV+F E A+KA+ +++ KE+ G+ + ++ + NR
Sbjct: 233 FGFVNFEKHEEAQKAVADMNGKEINGRLLYVGRAQKRLERQSELKRKFEQMKQERVNRYQ 292
Query: 189 ---LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPYG----TITSAKVMTEGGRSKGFGFVCF 340
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMT--EGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVSTKPLYVALAQRK 371
>gi|359477208|ref|XP_002279515.2| PREDICTED: flowering time control protein FCA [Vitis vinifera]
Length = 785
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 99/177 (55%), Gaps = 17/177 (9%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+++F+G +P+ A+EED+R L E G+V EV L+KDK +G+ +G F+ + + E A++AI
Sbjct: 118 AKLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIR 177
Query: 167 ELHSK-ELKGKT----IRCS------LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
LH++ L G +R + L + +LF+G++ K TE E +++ G VE
Sbjct: 178 ALHNQYTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVKEIFSPYG-QVE 236
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPK 270
+ L++D SR GF + + A A + LN + + G + P T+ +ADPK
Sbjct: 237 DVYLMRDELKQSRGCGFVKFSHRDMAMAAIN---ALNGIYTMRGCDQPLTVRFADPK 290
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 91/185 (49%), Gaps = 13/185 (7%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LF+G+VP+ TE++ R + E+ G V + LIKD + + +G F+ Y + A+ +
Sbjct: 119 KLFVGSVPRTATEEDIRPLFEEHG-NVLEVALIKDKRT-GQQQGCCFIKYATSEEAERAI 176
Query: 248 QKMLNANFKLDGNTPTIS--WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
+ + N + L G I +AD + A + K L+V ++ + +++KE+F
Sbjct: 177 RALHN-QYTLPGGVGPIQVRYADGE---RERLGAVEYK-LFVGSLNKQATEKEVKEIFSP 231
Query: 306 HGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEK-YEIDG--QVLEVVLAKPQT 361
+G+V V +M R GF+ ++ R A+ A+ Y + G Q L V A P+
Sbjct: 232 YGQVEDVYLMRDELKQSRGCGFVKFSHRDMAMAAINALNGIYTMRGCDQPLTVRFADPKR 291
Query: 362 DKKTE 366
+ E
Sbjct: 292 PRPGE 296
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 139/307 (45%), Gaps = 41/307 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID++
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDKV 159
Query: 169 HSKELKGKTIRC-----------SLSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ T+D+ +++ E G
Sbjct: 160 NGMLLNGKKVYVGKFIPRKEREKELGE-KAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKS 271
+IKD ++RGF FV + + D + Q +L N K +G + A K+
Sbjct: 219 TSHKVMIKDD---GKSRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKA 272
Query: 272 TPDHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
Q+K LYVKN+ D+ + E+++ F G +T KV+M G
Sbjct: 273 ERQQELKRKFEQLKLERLSRYQGVNLYVKNLDDSINDERLRREFAPFGTITSAKVMMEDG 332
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVP 377
+S + FGF+ ++ A KAV + I + L V LA+ + D+K Y L
Sbjct: 333 RS--KGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLAN 390
Query: 378 THLPHAG 384
+ G
Sbjct: 391 MRMQQMG 397
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 131/269 (48%), Gaps = 11/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
Q+ S ++G+ FV + A+ S K+ L+G + P+ + A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDKV--NGMLLNGKKVYVGKFIPRKEREKELGEKA 188
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALKA 338
+YVKN ++ + +K+KE+F+++G +T VM R FGF+ + + +A +A
Sbjct: 189 KLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQA 248
Query: 339 VKDTEKYEI-DGQVLEVVLAKPQTDKKTE 366
V + E+ +G+ + V A+ + +++ E
Sbjct: 249 VLELNGKEVAEGKCMYVGRAQKKAERQQE 277
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 295 GVNLYVKNLDDSINDERLRREFAPFGTITSAKVM--MEDGRSKGFGFVCFSAPEEATKAV 352
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 353 TEMNGRIIVTKPLYVALAQRK 373
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 130/269 (48%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS----AA 278
+ +RGF FV + + A Q+ +N + N + KS + + A
Sbjct: 131 ACDKHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRRERAAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V + SG+ R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ G++L A+ + +++ E
Sbjct: 247 AVVHMNGKEVSGRLLYASRAQKRVERQNE 275
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 91/403 (22%), Positives = 166/403 (41%), Gaps = 57/403 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ DK S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDKHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTI--------RCSLSETKNR------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + R +E R +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKML 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++D N R+R F FV + + + +++ +++ N K + G S A +
Sbjct: 219 -SVKVMRD--NSGRSRCFGFVNFEKH---EEAQKAVVHMNGKEVSGRLLYASRAQKRVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
+ Q LYVKN+ D+ +K+++ F +G +T + S
Sbjct: 273 QNELKRKFEQMKQDRLSRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGSHS 332
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTH-L 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y L L
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTL 392
Query: 381 PHAGYGGFA-----------GTPYGSVGTGFGVAAGFQ-QPMIYGRGPMPSGMHMV-PMV 427
+ G F P + G G Q P + P PS MV P V
Sbjct: 393 SNPLLGSFQQPSSYFLPAVPQPPAQAAYYGCGPVTPTQPAPRWTSQPPRPSCASMVRPPV 452
Query: 428 LPDGQIGYV--LQQPGVQMP--PPRPRRV----DRSNGPGGRG 462
+P ++ ++Q Q+P P +RV ++ GP G G
Sbjct: 453 MPRCPPAHISSVRQASTQVPRTVPHTQRVANIGTQTTGPSGVG 495
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRD-NSGRSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FV+F E A+KA+ ++ KE+ G+ + S ++ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRKFEQMKQDRLSRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ + +D+ RK G I K S ++GF FV +
Sbjct: 293 GVNLYVKNLDDSIDDDKLRKEFSPYG----VITSAKVMTEGSHSKGFGFVCF 340
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 10/148 (6%)
Query: 39 GDGNFEENDDDEEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQ 98
G NFE++++ ++ G + A+R E ++ + +D ++
Sbjct: 234 GFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRKFEQMKQDRLSRY-- 291
Query: 99 LLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK 158
G +++ L ++ LR P G + ++M E SKGF FV F S
Sbjct: 292 ------QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGSHSKGFGFVCFSSP 343
Query: 159 EFAKKAIDELHSKELKGKTIRCSLSETK 186
E A KA+ E++ + + K + +L++ K
Sbjct: 344 EEATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 139/287 (48%), Gaps = 14/287 (4%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
E ++ +L + N + +++G L +E L ++ PIG V +R+ +D + +S G
Sbjct: 46 EPSSEEQGELGGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLG 105
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRK 205
+A+V++ E +KAIDEL+ ++G+ R S+ + R GN+ KN K
Sbjct: 106 YAYVNYHKFEDGEKAIDELNYSLVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNK 165
Query: 206 VIEDVGPGVETIELIK-DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264
+ D I K + +++ F FV Y A+ + + N N L N +
Sbjct: 166 ALHDTFSAFGRILSCKVATDDMGQSKCFGFVHYETGEAAEAA---IENVNGMLL-NDREV 221
Query: 265 SWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
S D + ++KA +YVKNI + ++ +ELF +G++T + + + G
Sbjct: 222 FVGKHVSKKDRESKFEEMKANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQDG 281
Query: 321 K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
K + FGF++Y E SA+ AV+ EI+GQ + V A+ + ++ E
Sbjct: 282 KSKGFGFVNYEEHKSAVDAVEALNDKEINGQKIYVGRAQKKRERTEE 328
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 88/372 (23%), Positives = 155/372 (41%), Gaps = 50/372 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D + G+SK F FV + + E A+ AI+ +
Sbjct: 153 IFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-DMGQSKCFGFVHYETGEAAEAAIENV 211
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK + E+K +++ N+ +TE EF ++ G +
Sbjct: 212 NGMLLNDREVFVGKHVSKKDRESKFEEMKANYTNIYVKNIDLGFTEKEFEELFAPYGK-I 270
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD +++GF FV Y + A + + + + +++G + A K
Sbjct: 271 TSIYLEKD--QDGKSKGFGFVNYEEHKSAVDAVEALNDK--EINGQKIYVGRAQKKRERT 326
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ + Q L++KN+ D +EK++E F+ G +T + +GK
Sbjct: 327 EELKKQYEAIRLEKLSKYQGVNLFIKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKS 386
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ FGF+ ++ A KA+ + + I+G+ L V LA+ + ++++
Sbjct: 387 KGFGFVCFSTPEEATKAITEMNQRMINGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQN 446
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYG-RGPMPSG--MHMVPMVLPDGQIGYVLQ 438
A GGF G F PM YG +G P G + P P+ Q+
Sbjct: 447 AAAAGGFPGQ--------------FMPPMYYGQQGFFPPGGRGNAAPFPGPNPQMMMRRG 492
Query: 439 QPGVQMPPPRPR 450
QPG P PR
Sbjct: 493 QPGQPFPEQWPR 504
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L E L + +P G + ++M D ++G+SKGF FV F + E A KAI
Sbjct: 346 GVNLFIKNLDDQIDSEKLEEEFKPFGTITSAKVMVD-DAGKSKGFGFVCFSTPEEATKAI 404
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + + GK + +L++ K+
Sbjct: 405 TEMNQRMINGKPLYVALAQRKD 426
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 127/276 (46%), Gaps = 20/276 (7%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ ++
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 164 AIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A+DEL+ +KGK R S+ + +FI N+ G +
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 157
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
+ ++ +D S+ GF ++Y A A + K +N N + S D
Sbjct: 158 SCKVAQDEFGVSKGYGF---VHYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDR 211
Query: 276 SAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYA 330
+ ++KA +Y+KNI E+ ++LF++ GE+T + GK R FGF++++
Sbjct: 212 QSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFS 271
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV++ E+ Q L V A+ + +++ E
Sbjct: 272 THESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEE 307
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K ++I N+ ++EFRK+ E G +
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE-I 249
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L +D + ++RGF FV + + A + ++M + + + A K +
Sbjct: 250 TSATLSRDSE--GKSRGFGFVNFSTHESAQAAVEEMNDKEVR--SQKLYVGRAQKKHERE 305
Query: 275 HSA-----AASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVT 310
AA KA LYVKN+ D+ +K++ELF +G +T
Sbjct: 306 EELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTIT 353
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 129/284 (45%), Gaps = 39/284 (13%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + ++I + + +E+ R L E G++ L +D E G+S+GF
Sbjct: 208 KKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFG 266
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIEDV 210
FV+F + E A+ A++E++ KE++ + +L++G K E+E RK E
Sbjct: 267 FVNFSTHESAQAAVEEMNDKEVRSQ-----------KLYVGRAQKKHEREEELRKQYEAA 315
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN--------ANFKLDGNTP 262
+ S+ +G + LY N D K+ + K+ +T
Sbjct: 316 -----------RMEKASKYQGVN--LYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTA 362
Query: 263 TISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR 322
+ A P+S SA KA + E+ ++ ++ E P GKS +
Sbjct: 363 PVETATPESETKESANKENEKA---AEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKS--K 417
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
FGF+ ++ A KAV + + ++G+ L V LA+ + ++++
Sbjct: 418 GFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 461
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 131/274 (47%), Gaps = 16/274 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 48 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 107
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 108 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 167
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT---ISWADPKSTPDH 275
K Q+ N +G+ FV +Y A A + K +N D IS D +S D
Sbjct: 168 CKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDE 226
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVM---PPGKSGKRDFGFIHYAER 332
A +Y+KNI + + E+ +++F++ GE+T + P GKS R FGF++Y+
Sbjct: 227 MKA--NFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKS--RGFGFVNYSTH 282
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV + E+ Q L V A+ + +++ E
Sbjct: 283 ESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEE 316
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 128/285 (44%), Gaps = 39/285 (13%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + ++I + D +EE+ R + E G++ L +D E G+S+GF
Sbjct: 217 KKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPE-GKSRGFG 275
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIEDV 210
FV++ + E A+ A+DE+H KE+K + +L++G K+ E+E RK E
Sbjct: 276 FVNYSTHESAQAAVDEMHDKEVKTQ-----------KLYVGRAQKKHEREEELRKQYEAA 324
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM---------LNANFKLDGNT 261
+ S+ +G + LY N D +K+ + + + +T
Sbjct: 325 -----------RLEKASKYQGVN--LYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDST 371
Query: 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
P P S + K + + E +E + K ++ GKS
Sbjct: 372 PAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKESDEEKKDETKKSDKKLL--GKS-- 427
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KAV + + ++G+ L V LA+ + ++++
Sbjct: 428 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 472
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 26/258 (10%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L + +E L +L + V +R+ +D+ +S G+A+V+F S + A A++
Sbjct: 35 SSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAME 94
Query: 167 ELHSKELKGKTIRCSLSETKNR-----------LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
L+ + GK IR +S NR +FI N+ + R G V
Sbjct: 95 HLNFTPVNGKPIRIMIS---NRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGT-VL 150
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
+ ++ D S +G+ FV + + A+ S +K+ N L + +
Sbjct: 151 SCKVAVDSNGQS--KGYGFVQFESEESAEISIEKL---NGMLLNDKQVYVGHFIRHQERI 205
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
A SQ +YVKN+P+ T+ + +K LF HG +T ++ +GK + FGF+++ S
Sbjct: 206 RANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDS 265
Query: 335 ALKAVKDTEKYEIDGQVL 352
A AV+ ++DG VL
Sbjct: 266 AAAAVE-----KLDGTVL 278
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 100/395 (25%), Positives = 163/395 (41%), Gaps = 54/395 (13%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ VFI L + LRD G V ++ D +G+SKG+ FV F S+E A+ +I+
Sbjct: 123 ANVFIKNLDLSIDNKALRDTFAAFGTVLSCKVAVD-SNGQSKGYGFVQFESEESAEISIE 181
Query: 167 ELHSKELKGKT------------IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+L+ L K IR + S+ N +++ N+P+ T+D+ + + G
Sbjct: 182 KLNGMLLNDKQVYVGHFIRHQERIRANGSQFTN-VYVKNLPETTTDDDLKNLFAPHGTIT 240
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
I + + +++ F FV + N A + +K L+ D T + A K+ +
Sbjct: 241 SAIVMT---DSNGKSKCFGFVNFQNTDSAAAAVEK-LDGTVLGDDKTLYVGRAQRKAERE 296
Query: 275 HSAAAS------------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
A Q LY+KN+ D+ EK+KELF +G +T VM
Sbjct: 297 AELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLS 356
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ GF+ ++ A KA+ + + L V +A+ + ++K L
Sbjct: 357 KGSGFVAFSSPDEATKALNEMNGKMKGRKPLYVAVAQRKEERKAR--------LQAQFAQ 408
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRG------PMPSGMHMVPMVLPDGQIGY 435
GG + P G G G A Q M YG+G P P+G P ++
Sbjct: 409 IRAAGGISSLPSGIPGFHPGAARVSPQQMYYGQGNPGLAPPQPAGYGFQPQLMSG----- 463
Query: 436 VLQQPGVQMPPPRPRRVDRSNGPGGRGG--RGGSS 468
+PG+ P + R PG R G RGG+S
Sbjct: 464 --MRPGMGPNFLMPYQFQRQGQPGPRLGVRRGGNS 496
>gi|296083224|emb|CBI22860.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 99/177 (55%), Gaps = 17/177 (9%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+++F+G +P+ A+EED+R L E G+V EV L+KDK +G+ +G F+ + + E A++AI
Sbjct: 41 AKLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIR 100
Query: 167 ELHSK-ELKGKT----IRCS------LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
LH++ L G +R + L + +LF+G++ K TE E +++ G VE
Sbjct: 101 ALHNQYTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVKEIFSPYG-QVE 159
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPK 270
+ L++D SR GF + + A A + LN + + G + P T+ +ADPK
Sbjct: 160 DVYLMRDELKQSRGCGFVKFSHRDMAMAAIN---ALNGIYTMRGCDQPLTVRFADPK 213
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LF+G+VP+ TE++ R + E+ G +E + LIKD + + +G F+ Y + A+ +
Sbjct: 42 KLFVGSVPRTATEEDIRPLFEEHGNVLE-VALIKDKRT-GQQQGCCFIKYATSEEAERAI 99
Query: 248 QKMLNANFKLDGNTPTIS--WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
+ + N + L G I +AD + A + K L+V ++ + +++KE+F
Sbjct: 100 RALHN-QYTLPGGVGPIQVRYADGE---RERLGAVEYK-LFVGSLNKQATEKEVKEIFSP 154
Query: 306 HGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEK-YEIDG--QVLEVVLAKP 359
+G+V V +M R GF+ ++ R A+ A+ Y + G Q L V A P
Sbjct: 155 YGQVEDVYLMRDELKQSRGCGFVKFSHRDMAMAAINALNGIYTMRGCDQPLTVRFADP 212
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 26/258 (10%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L + +E L +L + V +R+ +D+ +S G+A+V+F S + A A++
Sbjct: 35 SSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAME 94
Query: 167 ELHSKELKGKTIRCSLSETKNR-----------LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
L+ + GK IR +S NR +FI N+ + R G V
Sbjct: 95 HLNFTPVNGKPIRIMIS---NRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGT-VL 150
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
+ ++ D S +G+ FV + + A+ S +K+ N L + +
Sbjct: 151 SCKVAVDSNGQS--KGYGFVQFESEESAEISIEKL---NGMLLNDKQVYVGHFIRHQERI 205
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
A SQ +YVKN+P+ T+ + +K LF HG +T ++ +GK + FGF+++ S
Sbjct: 206 RANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDS 265
Query: 335 ALKAVKDTEKYEIDGQVL 352
A AV+ ++DG VL
Sbjct: 266 AAAAVE-----KLDGTVL 278
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 100/395 (25%), Positives = 163/395 (41%), Gaps = 54/395 (13%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ VFI L + LRD G V ++ D +G+SKG+ FV F S+E A+ +I+
Sbjct: 123 ANVFIKNLDLSIDNKALRDTFAAFGTVLSCKVAVD-SNGQSKGYGFVQFESEESAEISIE 181
Query: 167 ELHSKELKGKT------------IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+L+ L K IR + S+ N +++ N+P+ T+D+ + + G
Sbjct: 182 KLNGMLLNDKQVYVGHFIRHQERIRANGSQFTN-VYVKNLPETTTDDDLKNLFAPHGTIT 240
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
I + + +++ F FV + N A + +K L+ D T + A K+ +
Sbjct: 241 SAIVMT---DSNGKSKCFGFVNFQNTDSAAAAVEK-LDGTVLGDDKTLYVGRAQRKAERE 296
Query: 275 HSAAAS------------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
A Q LY+KN+ D+ EK+KELF +G +T VM
Sbjct: 297 AELRAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLS 356
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ GF+ ++ A KA+ + + L V +A+ + ++K L
Sbjct: 357 KGSGFVAFSSPDEATKALNEMNGKMKGRKPLYVAVAQRKEERKAR--------LQAQFAQ 408
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRG------PMPSGMHMVPMVLPDGQIGY 435
GG + P G G G A Q M YG+G P P+G P ++
Sbjct: 409 IRAAGGISSLPSGIPGFHPGAARVSPQQMYYGQGNPGLAPPQPAGYGFQPQLMSG----- 463
Query: 436 VLQQPGVQMPPPRPRRVDRSNGPGGRGG--RGGSS 468
+PG+ P + R PG R G RGG+S
Sbjct: 464 --MRPGMGPNFLMPYQFQRQGQPGPRSGVRRGGNS 496
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 137/307 (44%), Gaps = 41/307 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 169 HSKELKGKTIRC-----------SLSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ T+D+ + + E G
Sbjct: 160 NGMLLNGKKVYVGKFIPRKEREKELGE-KAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTI 218
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKS 271
+IKD ++RGF FV + + D + Q +L N K +G + A K+
Sbjct: 219 TSHKVMIKDD---GKSRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKA 272
Query: 272 TPDHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
Q+K LYVKN+ D+ E++++ F G +T KV+M G
Sbjct: 273 ERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG 332
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVP 377
+S + FGF+ ++ A KAV + I + L V LA+ + D+K Y L
Sbjct: 333 RS--KGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLAN 390
Query: 378 THLPHAG 384
+ G
Sbjct: 391 MRMQQMG 397
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 131/269 (48%), Gaps = 11/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
Q+ S ++G+ FV + A+ S ++ L+G + P+ + A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRV--NGMLLNGKKVYVGKFIPRKEREKELGEKA 188
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALKA 338
+YVKN ++ + +K+K++F+++G +T VM R FGF+ + + +A +A
Sbjct: 189 KLFTNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQA 248
Query: 339 VKDTEKYEI-DGQVLEVVLAKPQTDKKTE 366
V + E+ +G+ + V A+ + +++ E
Sbjct: 249 VLELNGKEVAEGKCMYVGRAQKKAERQQE 277
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 295 GVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVM--MEEGRSKGFGFVCFSAPEEATKAV 352
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 353 TEMNGRIIVTKPLYVALAQRK 373
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 131/270 (48%), Gaps = 17/270 (6%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++G L +E L +L IG V +R+ +D + S G+A+V++ ++A++EL
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 169 HSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ +KG+ R S+ L GNV KN K + D I K Q
Sbjct: 115 NYTLIKGRPCRIMWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ 174
Query: 225 NPSRN-RGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQV 282
+ + N +G+ FV Y A+ + Q + N N L+ + PK D + ++
Sbjct: 175 DENANSKGYGFVHY---ETAEAANQAIKNVNGMLLNEKKVFVGHHIPKK--DRMSKVEEM 229
Query: 283 KA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPP-GKSGK-RDFGFIHYAERSSAL 336
KA +YVKNI T+ + +ELF+++G++T + +SGK R FGF++Y A
Sbjct: 230 KANFTNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDAY 289
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
KAV++ + GQ L V A+ + +++ E
Sbjct: 290 KAVEELNDSDFKGQKLYVGRAQKKHEREEE 319
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 108/228 (47%), Gaps = 31/228 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E+ SKG+ FV + + E A +AI +
Sbjct: 143 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-ENANSKGYGFVHYETAEAANQAIKNV 201
Query: 169 HSKELKGKTI----------RCS-LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + R S + E K +++ N+ T++EFR++ E G +
Sbjct: 202 NGMLLNEKKVFVGHHIPKKDRMSKVEEMKANFTNIYVKNIDSETTDNEFRELFEKYGD-I 260
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L D ++ +NRGF FV Y + A + +++ +++FK G + A K +
Sbjct: 261 TSASLAHDNES-GKNRGFGFVNYIRHEDAYKAVEELNDSDFK--GQKLYVGRAQKKHERE 317
Query: 275 HSA-----AASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVT 310
AA Q K+ LYVKN+ D ++++++F+ +G +T
Sbjct: 318 EELRKQYEAARQEKSAKYTGVNLYVKNLADEIDDDELRKVFEPYGAIT 365
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 77/155 (49%), Gaps = 25/155 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ +++ + N + +++ + + ++ + R+L E GD+ L D ESG+++GF
Sbjct: 219 KKDRMSKVEEMKANFTNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFG 278
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV++ E A KA++EL+ + KG+ + ++ K+
Sbjct: 279 FVNYIRHEDAYKAVEELNDSDFKGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYTGV 338
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L++ N+ +DE RKV E G + + ++++D
Sbjct: 339 NLYVKNLADEIDDDELRKVFEPYG-AITSAKVMRD 372
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 120 EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179
++D+ DL + + D ++ K K G+SKGF FV F + + A KA+ EL+ K + GK +
Sbjct: 403 KDDVDDLSKKL-DTVTIQGEK-KLLGKSKGFGFVCFSNPDEATKAVTELNQKMVHGKPLY 460
Query: 180 CSLSETK 186
+L++ K
Sbjct: 461 VALAQRK 467
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 133/274 (48%), Gaps = 15/274 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 112 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 171
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 172 CKVAQDEFGNSKGYGFV-HYETAEAATNAIKHVNGMLL---NEKKVFVGHHIAKKDRQSK 227
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK-RDFGFIHYAER 332
++KA +YVKN+ S E+ +ELF+++GE+T + G++GK R FGF ++ +
Sbjct: 228 FEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFFYFLKH 287
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV++ E GQ L V A+ + +++ E
Sbjct: 288 ESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEE 321
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 93/400 (23%), Positives = 162/400 (40%), Gaps = 86/400 (21%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ L + S E+ R+L E G++ + +D E+G+S+GF
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFG 280
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIEDV 210
F F E A A++EL+ KE KG+ +L++G K+ E+E RK E
Sbjct: 281 FFYFLKHESAAAAVEELNDKEYKGQ-----------KLYVGRAQKKHEREEELRKQHEAA 329
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
+ S+ +G + LY N D +K+ + T D
Sbjct: 330 -----------RVEKASKYQGVN--LYVKNLTDDIDDEKLRDLFISFGNITSARVMRDTA 376
Query: 271 STPDHSAAASQVKALYVKNIPDNTSTE-----------KIKELFQRHGEVTKVVMPPGKS 319
P S + + ++ +N+ D E K+++ ++ K+ GKS
Sbjct: 377 GDPG-SESEKEKESANKENVKDEAKKESGEEDSADKSDKVEKSDSKNATEKKL----GKS 431
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTH 379
+ FGF+ ++ A KAV + + ++G+ L V LA+ + +K++
Sbjct: 432 --KGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQ------------- 476
Query: 380 LPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVL-- 437
A V G++ F QP +Y P GQ G++
Sbjct: 477 -LEASIQARNTIRQQQVAAAAGMSQPFMQPAVY---------------YPPGQQGFIPAN 520
Query: 438 ----------QQPGVQMP-PPRPRRVDRSNG-PGGRGGRG 465
QQPG+ +P P R + G PG +GGRG
Sbjct: 521 AAQRGGMAFGQQPGMVIPGIPGGRPGQFAAGFPGQQGGRG 560
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 138/307 (44%), Gaps = 41/307 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 169 HSKELKGKTIRC-----------SLSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ T+D+ +++ E G
Sbjct: 160 NGMLLNGKKVYVGKFIPRKEREKELGE-KAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKS 271
+IKD ++RGF FV + + D + Q +L N K +G + A K+
Sbjct: 219 TSHKVMIKDD---GKSRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKA 272
Query: 272 TPDHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
Q+K LYVKN+ D+ E++++ F G +T KV+M G
Sbjct: 273 ERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG 332
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVP 377
+S + FGF+ ++ A KAV + I + L V LA+ + D+K Y L
Sbjct: 333 RS--KGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLAN 390
Query: 378 THLPHAG 384
+ G
Sbjct: 391 MRMQQMG 397
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 131/269 (48%), Gaps = 11/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
Q+ S ++G+ FV + A+ S ++ L+G + P+ + A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRV--NGMLLNGKKVYVGKFIPRKEREKELGEKA 188
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALKA 338
+YVKN ++ + +K+KE+F+++G +T VM R FGF+ + + +A +A
Sbjct: 189 KLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQA 248
Query: 339 VKDTEKYEI-DGQVLEVVLAKPQTDKKTE 366
V + E+ +G+ + V A+ + +++ E
Sbjct: 249 VLELNGKEVAEGKCMYVGRAQKKAERQQE 277
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 295 GVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVM--MEEGRSKGFGFVCFSAPEEATKAV 352
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 353 TEMNGRIIVTKPLYVALAQRK 373
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 140/307 (45%), Gaps = 41/307 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+I+++
Sbjct: 123 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVTQD-ESGASKGYGFVHFETEEAANKSIEKV 181
Query: 169 HSKELKGKTIRC-----------SLSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ T+D+ +++ E G
Sbjct: 182 NGMLLNGKKVYVGKFIPRKERQKELGE-KAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 240
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKS 271
+IKD ++RGF FV + + A+ Q +L+ N K +G + A K+
Sbjct: 241 TSHKVMIKDD---GKSRGFGFVAFEDPNSAE---QAVLDLNGKEIAEGKCMYVGRAQKKA 294
Query: 272 TPDHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
Q+K LYVKN+ D E++++ F G +T KV+M G
Sbjct: 295 ERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMMEEG 354
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVP 377
+S + FGF+ +++ A KAV + + + L V LA+ + D+K Y +
Sbjct: 355 RS--KGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRMAN 412
Query: 378 THLPHAG 384
+ G
Sbjct: 413 MRMQQMG 419
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 134/291 (46%), Gaps = 33/291 (11%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRS--------- 157
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+
Sbjct: 11 ASLYVGNLHTDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADVVVVGD 70
Query: 158 -------------KEFAKKAIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTE 200
+ A++A+D ++ +KG+ IR S+ L +GNV KN +
Sbjct: 71 GGSGGGGCGSGSGSQRAERALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDK 130
Query: 201 DEFRKVIEDVGPGVETIELIKDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259
+ K + D I K Q+ S ++G+ FV + A+ S +K+ L+G
Sbjct: 131 NIDNKAMYDTFSAFGNILSCKVTQDESGASKGYGFVHFETEEAANKSIEKV--NGMLLNG 188
Query: 260 NTPTISWADPKS--TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPP 316
+ P+ + A +YVKN ++ + +K+KE+F+++G +T VM
Sbjct: 189 KKVYVGKFIPRKERQKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIK 248
Query: 317 GKSGKRDFGFIHYAERSSALKAVKDTEKYEI-DGQVLEVVLAKPQTDKKTE 366
R FGF+ + + +SA +AV D EI +G+ + V A+ + +++ E
Sbjct: 249 DDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYVGRAQKKAERQQE 299
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F E A KA+
Sbjct: 317 GVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVM--MEEGRSKGFGFVCFSQPEEATKAV 374
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 375 TEMNGRIVGSKPLYVALAQRK 395
>gi|195388102|ref|XP_002052729.1| GJ17715 [Drosophila virilis]
gi|194149186|gb|EDW64884.1| GJ17715 [Drosophila virilis]
Length = 831
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 113/216 (52%), Gaps = 25/216 (11%)
Query: 66 AEANRN----DDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
ANRN DDD+ + + + + GE E D P+ ++F+G +PK E
Sbjct: 335 CSANRNVVSMDDDSCYRLDPDTAVVTYGEKEPD---------PDNIKMFVGQVPKSMDEA 385
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKG--KTI 178
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I
Sbjct: 386 QLREMFEEYGPVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPI 445
Query: 179 RCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +F
Sbjct: 446 QMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAF 502
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNTP--TISWAD 268
V + A + + L+ N ++G T + +AD
Sbjct: 503 VTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFAD 538
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + E A+
Sbjct: 743 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPESAQM 802
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L + K+
Sbjct: 803 AIKAMNGFQVGTKRLKVQLKKPKD 826
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 126/268 (47%), Gaps = 13/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S +++G L +E L + IG V +R+ +D + S G+A+V+F+S A AID
Sbjct: 37 SSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSPNDAAHAID 96
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+ + + GK IR S+ R +GN+ KN + K + D TI K
Sbjct: 97 VLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSAKV 156
Query: 223 PQNPSRN-RGFSFVLYYNNACADYSRQKM--LNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ N +G+ FV + A + + + N K P A+ +T +
Sbjct: 157 AMDGQGNSKGYGFVQFETQEAAQAAIDNVNGMELNDKQVYVGPFQRRAERSNTGE----- 211
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338
++ +YVKN+ +N S EK++E F HG VT V+ + GK + FGF+ Y E A A
Sbjct: 212 AKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMRDEEGKSKGFGFVCYEEPEGAAAA 271
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V+ + Y D + V A+ + +++ E
Sbjct: 272 VEKLDGYTEDEKTWVVCRAQKKAEREAE 299
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 152/346 (43%), Gaps = 63/346 (18%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G + ++ D + G SKG+ FV F ++E A+ AID +
Sbjct: 127 IFIKNLDKAIDNKALLDTFAQFGTITSAKVAMDGQ-GNSKGYGFVQFETQEAAQAAIDNV 185
Query: 169 HSKELKGKTI----------RCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
+ EL K + R + E K N +++ N+ +N ++++ R+ + G V +
Sbjct: 186 NGMELNDKQVYVGPFQRRAERSNTGEAKFNNVYVKNLSENLSDEKLREKFAEHG-AVTSC 244
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
+++D + S+ GF FV Y A + +K+ + D T + A K+ +
Sbjct: 245 VIMRDEEGKSK--GFGFVCYEEPEGAAAAVEKL--DGYTEDEKTWVVCRAQKKAERE--- 297
Query: 278 AASQVKA-----------------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKS 319
+++KA LY+KN+ D T EK++ELF+ G +T VM
Sbjct: 298 --AELKAKFDQERRERMEKMAGANLYIKNLEDGTDDEKLRELFKEFGTITSCRVMRDASG 355
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTH 379
R F+ ++ A +AV + + + L V LA+ + +++ ++
Sbjct: 356 VSRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQRKEERRMRLQAQFA-----QR 410
Query: 380 LPHAGY-GGFAGTPY----GSVGTGFGVAAGFQQPMIYGRGPMPSG 420
+P AG GG A PY G G PM YG+ P P+G
Sbjct: 411 MPGAGMPGGMA--PYMPPPGVPGA----------PMYYGQPP-PAG 443
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+ ++I L +E LR+L + G + R+M+D SG S+G AFV+F S + A +A+
Sbjct: 317 GANLYIKNLEDGTDDEKLRELFKEFGTITSCRVMRDA-SGVSRGSAFVAFSSPDEATRAV 375
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ K + K + +L++ K
Sbjct: 376 TEMNGKMVGAKPLYVALAQRK 396
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 164/365 (44%), Gaps = 54/365 (14%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +FI L K + L D G + ++ D SG SKG+ FV F S+E A+ AID
Sbjct: 121 ANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDA-SGLSKGYGFVQFDSEESAQNAID 179
Query: 167 ELHSKELKGKTIRC-----------SLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+L+ + K + +LS+TK N +++ N+ ++ T++E K + G +
Sbjct: 180 KLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMKFFGEYG-TI 238
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--- 271
+ +++D ++R F FV + N A + + LN K+D + A KS
Sbjct: 239 TSAVIMRDAD--GKSRCFGFVNFENPDDAAKAVEG-LNGK-KVDDKEWYVGKAQKKSERE 294
Query: 272 ---------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ SA Q LY+KN+ D S EK+KE+F +G +T KV+ P G
Sbjct: 295 QELKGRFEQSIKESADKYQGVNLYLKNLDDTISDEKLKEMFAEYGTITSCKVMRDPTGIG 354
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
R GF+ ++ A +A+ + I G+ L V LA+ + D++ +S + P +
Sbjct: 355 -RGSGFVAFSTPEEASRALGEMNGKMIAGKPLYVALAQRKEDRRARLQAQFS-QMRPVAI 412
Query: 381 PHAGYGGFAGTPYGSVGTG----FG----------VAAGFQQPMIYGR----GPMPSGMH 422
+ P G+ G G +G G+QQ ++ G GPMPS
Sbjct: 413 TPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPS--F 470
Query: 423 MVPMV 427
VPMV
Sbjct: 471 FVPMV 475
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 131/294 (44%), Gaps = 39/294 (13%)
Query: 101 ALPPNG-------------SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGES 147
A PPNG + +++G L ++ ++ L DL + V VR+ +D + S
Sbjct: 14 APPPNGVANAPNNPNQFVTTSLYVGDLEQNVNDAQLYDLFNQVVQVVSVRVCRDLTTRRS 73
Query: 148 KGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE---------TKNRLFIGNVPKNW 198
G+ +V+F + + A +A+D L+ L + IR S T N +FI N+ K
Sbjct: 74 LGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSLRKSGTAN-IFIKNLDKAI 132
Query: 199 TEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258
G + + ++ D S +G+ FV + + A NA KL+
Sbjct: 133 DHKALHDTFSSFGL-ILSCKIATDASGLS--KGYGFVQFDSEESAQ-------NAIDKLN 182
Query: 259 G---NTPTISWADPKSTPDHSAAASQVK--ALYVKNIPDNTSTEKIKELFQRHGEVTKVV 313
G N + D A S+ K +YVKN+ ++T+ E++ + F +G +T V
Sbjct: 183 GMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMKFFGEYGTITSAV 242
Query: 314 MPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ GK R FGF+++ A KAV+ ++D + V A+ +++++ E
Sbjct: 243 IMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKVDDKEWYVGKAQKKSEREQE 296
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L S+E L+++ G + ++M+D +G +G FV+F + E A +A+
Sbjct: 314 GVNLYLKNLDDTISDEKLKEMFAEYGTITSCKVMRD-PTGIGRGSGFVAFSTPEEASRAL 372
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ K + GK + +L++ K
Sbjct: 373 GEMNGKMIAGKPLYVALAQRK 393
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 127/276 (46%), Gaps = 20/276 (7%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ ++
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 164 AIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A+DEL+ +KGK R S+ + +FI N+ G +
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 157
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
+ ++ +D S+ GF ++Y A A + K +N N + S D
Sbjct: 158 SCKVAQDEFGVSKGYGF---VHYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDR 211
Query: 276 SAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYA 330
+ ++KA +Y+KNI E+ ++LF++ GE+T + GK R FGF++++
Sbjct: 212 QSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFS 271
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV++ E+ Q L V A+ + +++ E
Sbjct: 272 THESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEE 307
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K ++I N+ ++EFRK+ E G +
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE-I 249
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L +D + ++RGF FV + + A + ++M + + + A K +
Sbjct: 250 TSATLSRDSE--GKSRGFGFVNFSTHESAQAAVEEMNDKEVR--SQKLYVGRAQKKHERE 305
Query: 275 HSA-----AASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVT 310
AA KA LYVKN+ D+ +K++ELF +G +T
Sbjct: 306 EELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTIT 353
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 130/285 (45%), Gaps = 39/285 (13%)
Query: 91 DEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF 150
+KD+ ++ + N + ++I + + +E+ R L E G++ L +D E G+S+GF
Sbjct: 207 SKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGF 265
Query: 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIED 209
FV+F + E A+ A++E++ KE++ + +L++G K+ E+E RK E
Sbjct: 266 GFVNFSTHESAQAAVEEMNDKEVRSQ-----------KLYVGRAQKKHEREEELRKQYEA 314
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN--------ANFKLDGNT 261
+ S+ +G + LY N D K+ + K+ +T
Sbjct: 315 A-----------RMEKASKYQGVN--LYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDT 361
Query: 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
+ A P+S SA KA + E+ ++ ++ E P GKS
Sbjct: 362 APVETATPESETKESANKENEKA---AEGEKEPAAEEKEKEEEKEAEQKPEKKPLGKS-- 416
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KAV + + ++G+ L V LA+ + ++++
Sbjct: 417 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 461
>gi|340712736|ref|XP_003394911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Bombus
terrestris]
Length = 270
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 75/110 (68%), Gaps = 4/110 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G EVF G +PKD E++L L E G ++++RLM D +G ++G+AF++F ++E A+
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
+A+ EL + E+K GK ++ ++S RLF+GN+PK+ ++E ++E+ G
Sbjct: 219 QAVRELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEE---ILEEFG 265
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 98/377 (25%), Positives = 161/377 (42%), Gaps = 45/377 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + + L D GD+ ++ D E G SKG+ FV + + E A+ AI +
Sbjct: 174 IFIKNLDETIDNKALHDTFAAFGDILSCKVATD-EHGASKGYGFVHYVTGESAEAAIKGV 232
Query: 169 HSKELKGKTI-----------RCSLSETKNR---LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ +L K + + + E +++ L+I N+P T +E +V GP +
Sbjct: 233 NGMQLNDKVVFVGIHVPRRDRQAKIDEVRSQFTNLYIKNLPTETTTEELNEVFGKFGP-I 291
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ + D ++RGF FV Y N+ A + + + ++K GN ++ A ++ D
Sbjct: 292 TSAAVQSDEHG--KHRGFGFVNYENHESASKAVDALHDKDYK--GNVLYVARAQKRTERD 347
Query: 275 ------------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+ Q LYVKN+ D EK++ F G +T VM K
Sbjct: 348 AELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKGTS 407
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK--TEGTFPYSPGLVPTH 379
+ FGF+ ++ A KAV + + + L V LA+ + +K E +
Sbjct: 408 KGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQRKEVRKQQLEAQMSQRSQMRSQQ 467
Query: 380 LPHAGYGGFAGTPYGSVGTG--FGVAAGFQ----QPMIYGRGPMPSGMHMVPMVLPDGQI 433
+ A G G PYG+ FG AA + + M+Y MP+GM P P GQ+
Sbjct: 468 IAAA---GIPGAPYGAPPNPMYFGGAAAYPPHGGRGMMYPPNGMPAGMPPRPRYAPPGQM 524
Query: 434 GYVLQQPGVQMPPPRPR 450
+ PG PP P+
Sbjct: 525 A-PMGMPGGAPYPPHPQ 540
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 132/276 (47%), Gaps = 21/276 (7%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
PN S +++G L +E L ++ IG V +R+ +D + S G+A+V++ + A++
Sbjct: 82 PNTS-LYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAER 140
Query: 164 AIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A+++L+ +K K R S+ + +FI N+ + G +
Sbjct: 141 ALEQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFG-DIL 199
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
+ ++ D S +G+ FV Y A+ + K +N +L+ + P+ D
Sbjct: 200 SCKVATDEHGAS--KGYGFVHYVTGESAE-AAIKGVNG-MQLNDKVVFVGIHVPRR--DR 253
Query: 276 SAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYA 330
A +V++ LY+KN+P T+TE++ E+F + G +T + + GK R FGF++Y
Sbjct: 254 QAKIDEVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYE 313
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA KAV + G VL V A+ +T++ E
Sbjct: 314 NHESASKAVDALHDKDYKGNVLYVARAQKRTERDAE 349
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L + +E L++ P G + ++MKD E G SKGF FV F S + A KA+
Sbjct: 367 GVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKD-EKGTSKGFGFVCFSSPDEATKAV 425
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ K L K + SL++ K
Sbjct: 426 AEMNGKMLGSKPLYVSLAQRK 446
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 93/203 (45%), Gaps = 32/203 (15%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
+D+ A++ + + ++I LP + + E+L ++ G + + D E G+ +GF F
Sbjct: 251 RDRQAKIDEVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSD-EHGKHRGFGF 309
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------R 188
V++ + E A KA+D LH K+ KG + + ++ +
Sbjct: 310 VNYENHESASKAVDALHDKDYKGNVLYVARAQKRTERDAELKKAHEQQKYETTLKYQGVN 369
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
L++ N+ + +++ + G + + +++KD + S +GF FV + + D + +
Sbjct: 370 LYVKNLDDEYDDEKLQNEFTPFG-TITSCKVMKDEKGTS--KGFGFVCF---SSPDEATK 423
Query: 249 KMLNANFKLDGNTPT-ISWADPK 270
+ N K+ G+ P +S A K
Sbjct: 424 AVAEMNGKMLGSKPLYVSLAQRK 446
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 137/307 (44%), Gaps = 41/307 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 169 HSKELKGKTIRC-----------SLSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ T+D+ + + E G
Sbjct: 160 NGMLLNGKKVYVGKFIPRKEREKELGE-KAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTI 218
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKS 271
+IKD ++RGF FV + + D + Q +L N K +G + A K+
Sbjct: 219 TSHKVMIKDD---GKSRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKA 272
Query: 272 TPDHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
Q+K LYVKN+ D+ E++++ F G +T KV+M G
Sbjct: 273 ERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG 332
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVP 377
+S + FGF+ ++ A KAV + I + L V LA+ + D+K Y L
Sbjct: 333 RS--KGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLAN 390
Query: 378 THLPHAG 384
+ G
Sbjct: 391 MRMQQMG 397
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 131/269 (48%), Gaps = 11/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
Q+ S ++G+ FV + A+ S ++ L+G + P+ + A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRV--NGMLLNGKKVYVGKFIPRKEREKELGEKA 188
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALKA 338
+YVKN ++ + +K+K++F+++G +T VM R FGF+ + + +A +A
Sbjct: 189 KLFTNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQA 248
Query: 339 VKDTEKYEI-DGQVLEVVLAKPQTDKKTE 366
V + E+ +G+ + V A+ + +++ E
Sbjct: 249 VLELNGKEVAEGKCMYVGRAQKKAERQQE 277
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 295 GVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVM--MEEGRSKGFGFVCFSAPEEATKAV 352
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 353 TEMNGRIIVTKPLYVALAQRK 373
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 131/276 (47%), Gaps = 19/276 (6%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 51 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 111 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 170
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 171 CKVAQDEFGNSKGYGFV-HYETAEAATNAIKHVNGMLL---NEKKVFVGHHIAKKDRQSK 226
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP----PGKSGKRDFGFIHYA 330
++KA +YVKN+ + E+ +ELF+++GE+T + GKS R FGF+++
Sbjct: 227 FEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKS--RGFGFVNFV 284
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV+D E GQ L V A+ + +++ E
Sbjct: 285 NHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEE 320
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 164/391 (41%), Gaps = 68/391 (17%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ L + + E+ R+L E G++ L +D E+G+S+GF
Sbjct: 220 KKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFG 279
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIEDV 210
FV+F + + A A+++L+ KE KG+ +L++G K+ E+E RK E
Sbjct: 280 FVNFVNHDSAAAAVEDLNDKEYKGQ-----------KLYVGRAQKKHEREEELRKQHEAA 328
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
+ S+ +G + LY N D +K+ + T D
Sbjct: 329 -----------RVEKASKYQGVN--LYVKNLTDDIDDEKLRDLFIGFGNITSARVMRD-- 373
Query: 271 STPDHSAAASQVKALYVKNIPDNTSTEKIKEL-FQRHGEVTKVVMPP-------GKSGK- 321
T + + S+ + K+ +N E KE + E T P K GK
Sbjct: 374 -TIGDAGSESEKEKEASKDNKENVKEETKKEAGGEDSAEKTDKAEKPDTKKPTDKKLGKS 432
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ FGF+ ++ A KAV + + ++G+ L V LA+ + +K++
Sbjct: 433 KGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQ--------------L 478
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMH-MVPMVLPDGQIGYVLQQP 440
A V G++ F QP +Y P G +P G + + QQP
Sbjct: 479 EASIQARNTIRQQQVAAAAGMSQPFMQPAVY----YPPGQQGFIPANAQRGGMAFA-QQP 533
Query: 441 GVQ---MPPPRPRRVDRSNGPGG---RGGRG 465
G+ MP RP + PGG +GGRG
Sbjct: 534 GMVLPGMPGGRPGQY-----PGGFPQQGGRG 559
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 128/271 (47%), Gaps = 18/271 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L A+E L IG V R+ +D + S G+ +V+F + A++A++
Sbjct: 1 TSLYVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRNSLGYGYVNFEEPKDAERALE 60
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L+ + G+ IR S+ K +FI N+ K + + +G + + +
Sbjct: 61 NLNYESFMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKTIDQKQLYDTFSFIG-KILSCK 119
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ D S+ G+ FV + CA+ + +K+ ++ + P S ++
Sbjct: 120 IAMDEHGNSK--GYGFVHFEKEECAERAIEKI--NGMMINDRVVYVGKFIPSSDRKSASG 175
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVM---PPGKSGKRDFGFIHYAERSSA 335
+ +YVKN P +T+ EK++++F GE+ + P GKS + FGF+ + + A
Sbjct: 176 KLRFNNIYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKS--KGFGFVCFHDPDHA 233
Query: 336 LKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+AV+ EI+G+ L A+ + +++ E
Sbjct: 234 EQAVRVMHGKEINGRALYASRAQRKEERQEE 264
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 133/285 (46%), Gaps = 34/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K ++ L D IG + ++ D E G SKG+ FV F +E A++AI+++
Sbjct: 91 IFIKNLDKTIDQKQLYDTFSFIGKILSCKIAMD-EHGNSKGYGFVHFEKEECAERAIEKI 149
Query: 169 HSKELK------GKTIRCSLSETK------NRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+ + GK I S ++ N +++ N P + T+++ R + + G +++
Sbjct: 150 NGMMINDRVVYVGKFIPSSDRKSASGKLRFNNIYVKNFPPDTTDEKLRDMFSEFGE-IKS 208
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTPDH 275
+ K+P+ +++GF FV +++ D++ Q + + K ++G S A K
Sbjct: 209 CCVEKNPEG--KSKGFGFVCFHD---PDHAEQAVRVMHGKEINGRALYASRAQRKEERQE 263
Query: 276 SAAASQVKA-------------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
K LYVKN+ DN E++KE F +G +T VM
Sbjct: 264 ELKQRLEKQRAERLSKYVPGVNLYVKNLDDNIDDERLKEAFSHYGPITSAKVMTDANGRS 323
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ + + A +AV + + + L V LA+ + D++ +
Sbjct: 324 KGFGFVCFTQPEQAARAVTEMNATLVGSKPLYVALAQRKEDRRAK 368
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 127/276 (46%), Gaps = 20/276 (7%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ ++
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 164 AIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A+DEL+ +KGK R S+ + +FI N+ G +
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 157
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
+ ++ +D S+ GF ++Y A A + K +N N + S D
Sbjct: 158 SCKVAQDEFGVSKGYGF---VHYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDR 211
Query: 276 SAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYA 330
+ ++KA +Y+KNI E+ ++LF++ GE+T + GK R FGF++++
Sbjct: 212 QSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFS 271
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV++ E+ Q L V A+ + +++ E
Sbjct: 272 THESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEE 307
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 28/226 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K ++I N+ ++EFRK+ E G +
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE-I 249
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD----GNTPTISWADPK 270
+ L +D + ++RGF FV + + A + ++M + + G + +
Sbjct: 250 TSATLSRDSE--GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEE 307
Query: 271 STPDHSAA----ASQVKA--LYVKNIPDNTSTEKIKELFQRHGEVT 310
+ AA AS+ + LYVKN+ D+ +K++ELF +G +T
Sbjct: 308 LRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTIT 353
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 129/285 (45%), Gaps = 39/285 (13%)
Query: 91 DEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF 150
+KD+ ++ + N + ++I + + +E+ R L E G++ L +D E G+S+GF
Sbjct: 207 SKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGF 265
Query: 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIED 209
FV+F + E A+ A++E++ KE++ + +L++G K E+E RK E
Sbjct: 266 GFVNFSTHESAQAAVEEMNDKEVRSQ-----------KLYVGRAQKKHEREEELRKQYEA 314
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN--------ANFKLDGNT 261
+ S+ +G + LY N D K+ + K+ +T
Sbjct: 315 A-----------RMEKASKYQGVN--LYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDT 361
Query: 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
+ A P+S SA KA + E+ ++ ++ E P GKS
Sbjct: 362 APVETATPESETKESANKENEKA---AEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKS-- 416
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KAV + + ++G+ L V LA+ + ++++
Sbjct: 417 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 461
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 133/276 (48%), Gaps = 25/276 (9%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ S +++G L D SE L ++ +G V +R+ +D + S +A++++ + A++A
Sbjct: 6 SSSSLYVGDLHPDVSESHLFEVFNQVGPVANLRICRDNTTRRSLSYAYINYHNSTDAERA 65
Query: 165 IDELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVET 216
+D L++ +KGK R S+ L FI N+ K G + +
Sbjct: 66 LDTLNNTPIKGKACRIMWSQRDPSLRKSGIGNIFIKNLDKTVDHKALYDTFSAFG-NILS 124
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQK---MLNANFKLDGNTPTISWADPKSTP 273
+++ D N S +GF FV Y + A+ + K M+ N K+ + P +
Sbjct: 125 CKVVTDETNTS--KGFGFVHYESQESAEKAIAKVNGMMINNQKV--------FVGPFKSS 174
Query: 274 DHSAAASQVKA--LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYA 330
A +VK +++KN+ ++ S +++ +L Q HG++T + + + GK + FGF ++
Sbjct: 175 KERGATQEVKYTNVFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTDEKGKSKGFGFANFE 234
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A AV++ G+V+ V A+ + +++ E
Sbjct: 235 HADAAKGAVENENGKMFSGKVIYVGRAQKKLEREAE 270
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 123/269 (45%), Gaps = 26/269 (9%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+ SKGF FV + S+E A+KAI ++
Sbjct: 98 IFIKNLDKTVDHKALYDTFSAFGNILSCKVVTD-ETNTSKGFGFVHYESQESAEKAIAKV 156
Query: 169 HSKELKGKTI----------RCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
+ + + + R + E K +FI N+ ++ +E + +++ G + +
Sbjct: 157 NGMMINNQKVFVGPFKSSKERGATQEVKYTNVFIKNLSEDVSEQQLTDLLQAHG-KITNL 215
Query: 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL-DGNTPTISWADPKSTPDHS 276
++ D + S+ GF+ N AD ++ + N N K+ G + A K +
Sbjct: 216 CIMTDEKGKSKGFGFA-----NFEHADAAKGAVENENGKMFSGKVIYVGRAQKKLEREAE 270
Query: 277 A-----AASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHY 329
Q LY+KN+ D+ ++K++ F +G +T KV+ S + FGF+ Y
Sbjct: 271 LKHKFETKYQGVNLYIKNLDDSIDSDKLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCY 330
Query: 330 AERSSALKAVKDTEKYEIDGQVLEVVLAK 358
+ A KAV + + + L V A+
Sbjct: 331 STPDEASKAVAEMHGRMVGSKPLYVAFAQ 359
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L + LR G + ++M+D + SKGF FV + + + A KA+
Sbjct: 281 GVNLYIKNLDDSIDSDKLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCYSTPDEASKAV 340
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E+H + + K + + ++ K+
Sbjct: 341 AEMHGRMVGSKPLYVAFAQRKD 362
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 149/315 (47%), Gaps = 32/315 (10%)
Query: 70 RNDDDTPHVEEEEKPTASVGEDE-KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCE 128
++DD H+ + ++ + S DE K K NG+ +F+G LP + L +L
Sbjct: 198 QSDDQDKHLCKRQELSFSSAHDEGKLKEG-------NGTNLFVGNLPPSLASHKLIELFL 250
Query: 129 PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS----- 183
P G + + R++ D +G SKG+ FV + +A +AI ++ + ++G+ + L+
Sbjct: 251 PFGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEAIKHMNGRMVEGRMLEVRLAGAPSS 310
Query: 184 -ETK----NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY- 237
TK ++L++ N+P ED+ + G V ++++++D ++G+ FV Y
Sbjct: 311 GSTKEMDMSKLYVCNLPLLLHEDKLHDLFVPYGQ-VTSVKVMRD-HATGLSKGYGFVRYS 368
Query: 238 --YNNACADYSRQKMLNANFKLDGNTPTISWADPKST------PDHSAAAS-QVKALYVK 288
+ A A + L K++ +S + ++ DH + +YV+
Sbjct: 369 DPQHAAHAIFQLNGHLIEGKKMEVRVAAVSSSGSNTSVQAISETDHQLTKEVDMSNVYVQ 428
Query: 289 NIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
N+P +T+K+ LF +G+VT KV M + +GF+ +++ A AV +
Sbjct: 429 NLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVIELNGCL 488
Query: 347 IDGQVLEVVLAKPQT 361
++G+ + V + P +
Sbjct: 489 VEGRKILVRVRPPSS 503
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 127/277 (45%), Gaps = 40/277 (14%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
S V++ LP + + L +L P G V ++ D SG SKG+ FV F A A+
Sbjct: 423 SNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVI 482
Query: 167 ELHSKELKGKTIRCSL--------SETKNR---------LFIGNVPKNWTEDEFRKVIED 209
EL+ ++G+ I + S NR L++ N+P + + K++E
Sbjct: 483 ELNGCLVEGRKILVRVRPPSSPVESHANNRTLKEIDMSNLYVCNIPSSMNK---AKLVEL 539
Query: 210 VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA-- 267
P + Q+ + ++G+ FV + ++ CA M+N ++G T ++ A
Sbjct: 540 FLPFGRITHAMVVEQSNNSSKGYGFVKFADSHCAA-EAVAMMNGAL-IEGETISVRVAGL 597
Query: 268 --DPKSTPDHSAAASQVKA--------LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG 317
S+ + S++ A LYV N+P S +K+ LF G++ +VVM
Sbjct: 598 SPSVSSSVSQHSPHSEINASPEINNCRLYVTNLPQTMSADKLVSLFMPFGQIDRVVM--- 654
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354
++ F+ YA+ +SA KA+K + Y I+G+ L V
Sbjct: 655 ---YAEYSFVLYADINSAAKALKHMDGYLIEGKRLVV 688
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 118/292 (40%), Gaps = 55/292 (18%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N +++ LP+ S + L L P G + V + + ++FV + A KA
Sbjct: 621 NNCRLYVTNLPQTMSADKLVSLFMPFGQIDRVVMYAE--------YSFVLYADINSAAKA 672
Query: 165 IDELHSKELKGKTI---------------RCSLSETK-------NRLFIGNVPKNWTEDE 202
+ + ++GK + CS S +K L++G VP T ++
Sbjct: 673 LKHMDGYLIEGKRLVVKGSEPLPANAAQSACSQSGSKLVKEIDMANLYVGRVPSAVTCEQ 732
Query: 203 FRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262
++ G V+ + + G+ + Y N + A + + +++ G+T
Sbjct: 733 LVQIFCLYGEIVQAKKF---------DAGYGMIRYANASSAAAAIDHL--DGYQIGGSTL 781
Query: 263 TI------------SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
+ ++A TP + + LYV +P +T+K+ ELF G++T
Sbjct: 782 VVRVAGLPAESDVATFARTPQTPGNEHRQIDMTNLYVGYLPPYVTTDKLIELFLPCGQIT 841
Query: 311 --KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360
KVV+ + FGF+ +A+ SA A+ Y +DG +L V A Q
Sbjct: 842 QAKVVVDKFTGVSKGFGFVRFADAYSAATAITHMNGYPLDGHMLAVRTAGVQ 893
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 127/266 (47%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 28 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 87
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 88 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 147
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 148 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 206
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + +KELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 207 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVE 266
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E+ G+ + V A+ + +++ E
Sbjct: 267 EMNGKEMSGKAIFVGRAQKKVERQAE 292
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 133/291 (45%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 118 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 175
Query: 169 HSKELKGKTI----------RCSLSETKNRLFIGNVPKNWTED----EFRKVIEDVGPGV 214
+ L + + R + K + F KN+ E+ +++ G +
Sbjct: 176 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 235
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++D + +++GF FV Y + A+ + ++M ++ G + A K
Sbjct: 236 -SVKVMRD--SSGKSKGFGFVSYEKHEDANKAVEEMNGK--EMSGKAIFVGRAQKKVERQ 290
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK++ F G +T KV++ G+S
Sbjct: 291 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRS- 349
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 350 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 399
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ + +L++L G V++M+D SG+SKG
Sbjct: 191 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKG 249
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 250 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 309
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ R+ G +++D R++GF FV +
Sbjct: 310 GVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLED----GRSKGFGFVCF 357
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 130/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW-ADPKSTPDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + + + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKCRREREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++KE F ++G+ V + SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
D +++G+++ V A+ + +++ E
Sbjct: 250 DMNGKDVNGKIMFVGRAQKKVERQAE 275
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 131/291 (45%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F +++ A +AI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 169 HSKELKGKTI-----RCSLSE-----TKNRLFIGNVPKNWTED----EFRKVIEDVGPGV 214
+ L + + +C K + F KN+ ED ++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ DP +++GF FV + + A+ + M + ++G + A K
Sbjct: 219 -SVKVMTDPSG--KSKGFGFVSFERHEDANKAVDDMNGKD--VNGKIMFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G ++I L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEEGRSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 130/268 (48%), Gaps = 10/268 (3%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ ++IG L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ + R +GN+ KN + K + D I K
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRRSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAEFGAKARE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVT---KVVMPPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN D+ E+++E F+++ T KV+M G K FGF+ + A KA
Sbjct: 190 FTNVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSK-GFGFVSFERHEDAQKA 248
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V + E++G+ + V A+ + +++TE
Sbjct: 249 VDEMNTKELNGRAIYVGRAQKKAERQTE 276
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 130/289 (44%), Gaps = 38/289 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A KAI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSET----------KNRLFIGNVPKNWTED----EFRKVIEDVGPGV 214
+ L + + ++ K R F KN+ +D R+ E
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAEFGAKAREFTNVYIKNFGDDMDDERLREYFEQYVGKT 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKS-- 271
+++++ D +++GF FV + + A + +M N K L+G + A K+
Sbjct: 219 LSVKVMMD--EGGKSKGFGFVSFERHEDAQKAVDEM---NTKELNGRAIYVGRAQKKAER 273
Query: 272 ----------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q LYVKN+ DN + E++ + F G +T KV+M G+S
Sbjct: 274 QTELKRKFEMLKQERMSKYQGVNLYVKNLDDNINDERLWKEFSPFGTITSAKVMMEEGRS 333
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGT 368
R FGF+ ++ A KAV + I + L V LA+ + ++K T
Sbjct: 334 --RGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEERKMHLT 380
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L + ++E L P G + ++M E G S+GF FV F S E A KA
Sbjct: 293 QGVNLYVKNLDDNINDERLWKEFSPFGTITSAKVM--MEEGRSRGFGFVCFSSPEEATKA 350
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 351 VTEMNGRIIGSKPLYVALAQRK 372
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 131/276 (47%), Gaps = 19/276 (6%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 51 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 111 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 170
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 171 CKVAQDEFGNSKGYGFV-HYETAEAATNAIKHVNGMLL---NEKKVFVGHHIAKKDRQSK 226
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP----PGKSGKRDFGFIHYA 330
++KA +YVKN+ + E+ +ELF+++GE+T + GKS R FGF+++
Sbjct: 227 FEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKS--RGFGFVNFV 284
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV+D E GQ L V A+ + +++ E
Sbjct: 285 NHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEE 320
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 96/393 (24%), Positives = 164/393 (41%), Gaps = 72/393 (18%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ L + + E+ R+L E G++ L +D E+G+S+GF
Sbjct: 220 KKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFG 279
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIEDV 210
FV+F + + A A+++L+ KE KG+ +L++G K+ E+E RK E
Sbjct: 280 FVNFVNHDSAAAAVEDLNDKEYKGQ-----------KLYVGRAQKKHEREEELRKQHEAA 328
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
+ S+ +G + LY N D +K+ + T D
Sbjct: 329 -----------RVEKASKYQGVN--LYVKNLTDDIDDEKLRDLFIGFGNITSARVMRD-- 373
Query: 271 STPDHSAAASQVKALYVKNIPDNTSTEKIKEL-FQRHGEVTKVVMPP----------GKS 319
T + + S+ + K+ +N E KE + E T P GKS
Sbjct: 374 -TISDAGSESEKEKEASKDNKENVKEETKKEAGGEDSAEKTDKAEKPDTKKPTDKKLGKS 432
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTH 379
+ FGF+ ++ A KAV + + ++G+ L V LA+ + +K++
Sbjct: 433 --KGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQ------------- 477
Query: 380 LPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMH-MVPMVLPDGQIGYVLQ 438
A V G++ F QP +Y P G +P G + + Q
Sbjct: 478 -LEASIQARNTIRQQQVAAAAGMSQPFMQPAVY----YPPGQQGFIPANAQRGGMAFA-Q 531
Query: 439 QPGVQ---MPPPRPRRVDRSNGPGG---RGGRG 465
QPG+ MP RP + PGG +GGRG
Sbjct: 532 QPGMVLPGMPGGRPGQY-----PGGFPQQGGRG 559
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 104/409 (25%), Positives = 176/409 (43%), Gaps = 58/409 (14%)
Query: 101 ALPPNGS-EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
AL GS +FI L D + L D G++ ++ D E+G+SKGF FV F
Sbjct: 121 ALRKKGSANIFIKNLHSDIDNKALYDTFSVFGNILSSKIATD-ETGKSKGFGFVHFEDDT 179
Query: 160 FAKKAIDELHSKELKGKTIRC-----------SLSETK---NRLFIGNVPKNWTEDEFRK 205
AK+AID L+ L G+ I L E+K +++ N+ T++EF +
Sbjct: 180 AAKEAIDALNGMLLNGQEIFVGPHLSRKERDSQLEESKANFTNIYVKNINLETTDEEFTE 239
Query: 206 VIEDVGPGVET-IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264
+ G + +E +D + +GF FV + N+ A + +++ + FK +
Sbjct: 240 LFSKYGKVLSAALEKTED----GKLKGFGFVDFENHEDAAKAVEELNGSQFK--DQELFV 293
Query: 265 SWADPK------------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV 312
S A K ++ A Q L++KN+ D+ EK+KE F +G +T V
Sbjct: 294 SRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFIKNLDDSIDDEKLKEEFAPYGNITSV 353
Query: 313 VMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ ++GK R FGF+ ++ A KA+ + + + G+ L V +A+ + ++++
Sbjct: 354 RVMRTENGKSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ----- 408
Query: 372 SPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDG 431
+ + + + G+ F PM YG P P G VP P+
Sbjct: 409 ----LAQQIQARNQMRYQQATAAAAAAAAGIPGQFMPPMFYGVMP-PRG---VPFNGPNP 460
Query: 432 QIGYVLQQPGVQMPPPRPRRVDRSNG--PGGRGGRGGSSGGDDGNRGRR 478
Q Q GV PP + R G P G R G++G + + +R
Sbjct: 461 Q-----QMNGV--PPQQFRNAPVYGGMPPQGAFPRNGAAGNNHFYQQKR 502
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 132/298 (44%), Gaps = 22/298 (7%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ + +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E KKA
Sbjct: 38 SSASLYVGDLDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKKA 97
Query: 165 IDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
I++L+ +KG+ R S+ +FI KN D K + D
Sbjct: 98 IEKLNYTPIKGRLCRIMWSQRDPALRKKGSANIFI----KNLHSDIDNKALYDTFSVFGN 153
Query: 217 IELIKDPQNPS-RNRGFSFVLYYNNACA----DYSRQKMLNANFKLDGNTPTISWADPKS 271
I K + + +++GF FV + ++ A D +LN G P +S + S
Sbjct: 154 ILSSKIATDETGKSKGFGFVHFEDDTAAKEAIDALNGMLLNGQEIFVG--PHLSRKERDS 211
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYA 330
+ S A +YVKNI T+ E+ ELF ++G+V + + GK + FGF+ +
Sbjct: 212 QLEESKA--NFTNIYVKNINLETTDEEFTELFSKYGKVLSAALEKTEDGKLKGFGFVDFE 269
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGF 388
A KAV++ + Q L V A+ + ++ E Y + + G F
Sbjct: 270 NHEDAAKAVEELNGSQFKDQELFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLF 327
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 42 NFEENDDDEEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLA 101
+FE ++D + G+ KDQ +R ++E +K + ++ K+
Sbjct: 267 DFENHEDAAKAVEELNGSQFKDQELFVSRAQKKYERMQELKKQYEASRLEKMAKY----- 321
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
G +FI L +E L++ P G++ VR+M+ E+G+S+GF FV F + E A
Sbjct: 322 ---QGVNLFIKNLDDSIDDEKLKEEFAPYGNITSVRVMR-TENGKSRGFGFVCFSTPEEA 377
Query: 162 KKAIDELHSKELKGKTIRCSLSETKN 187
KAI E + + + GK + ++++ K+
Sbjct: 378 TKAITEKNQQIVAGKPLYVAIAQRKD 403
>gi|401827787|ref|XP_003888186.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392999386|gb|AFM99205.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 500
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 115/239 (48%), Gaps = 14/239 (5%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++G LP + DL + +G + ++L+K ES S FAFV+F ++E A+KA+ E
Sbjct: 16 IYVGDLPPKTIDSDLFRIFSNVGKILNIKLIKRGESAPS--FAFVTFENEEDAEKAVREY 73
Query: 169 HSKELKGKTIRCSLS-----ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
EL + IR ET N +F+ N+P+++T + G V + ++ P
Sbjct: 74 KHYELHDRQIRVMRKDERPPETGN-IFVKNLPESFTSKDLDDAFSMFGEIV-SCKVATTP 131
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQV 282
Q S+ G+ FV + A + N N L GN + +P+ S S +
Sbjct: 132 QGKSK--GYGFVQFKEKRSAKKVIKNFNNLNGLMLGGNKIVVELYNPEMKKGESKKVSTM 189
Query: 283 -KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAV 339
++KN P + +++ +L +++G+VT + P GK + F F ++ SAL A+
Sbjct: 190 FTNCFIKNFPGSVGEKELLDLLEKYGKVTSLCFPTKDDGKPKGFAFANFETHESALNAI 248
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 130/316 (41%), Gaps = 56/316 (17%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP +F+ LP+ + +DL D G++ ++ + G+SKG+ FV F+ K AK
Sbjct: 92 PPETGNIFVKNLPESFTSKDLDDAFSMFGEIVSCKVATTPQ-GKSKGYGFVQFKEKRSAK 150
Query: 163 KAID-----------------ELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFR 204
K I EL++ E+ KG++ + S T FI N P + E E
Sbjct: 151 KVIKNFNNLNGLMLGGNKIVVELYNPEMKKGESKKVSTMFT--NCFIKNFPGSVGEKELL 208
Query: 205 KVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264
++E G KD P +GF+F + + A LNA L G P
Sbjct: 209 DLLEKYGKVTSLCFPTKDDGKP---KGFAFANFETHESA-------LNAINGLHGTFPFD 258
Query: 265 SWAD-------------------PKSTPDHSAAASQ--VKALYVKNIPDNTSTEKIKELF 303
+ D + + + Q K LY+ NIP+ E++ +F
Sbjct: 259 NGKDGGEPFYIQKGQKREERAEVLRKMFEQLSMQGQNYKKNLYITNIPEGFGAEELSNIF 318
Query: 304 QRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362
+ G +T + V G + ++ + +I Y+ A AV+ + +DG L+V K + +
Sbjct: 319 KEFGSITSMSVGVDGANNQKQYAYICYSTPEEASIAVERGNEIYLDGNRLQVAYFKNKLE 378
Query: 363 KKTE---GTFPYSPGL 375
+ E G Y PG+
Sbjct: 379 RMKEKEFGGLGYKPGI 394
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 129/273 (47%), Gaps = 20/273 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +A+E L D G V +R+ +D + S G+A+V+F+ E A++AID
Sbjct: 11 ASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAID 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ ELKGK IR S+ L +GN+ KN + K++ D I K
Sbjct: 71 TMNFDELKGKAIRIMWSQRDPALRKSGVGNIFIKNLDKTIDNKMLYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDG---NTPTISWADPKS----TPD 274
N + ++G+ FV + A + A KLDG N + KS +
Sbjct: 131 NVNLAGESKGYGFVHFETEEAA-------VKAIEKLDGMLMNDKKVFVGRFKSRGERVRE 183
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
+ A Q +++KN+P K+ E+F HG V V + ++GK R FGF+ +
Sbjct: 184 YGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHE 243
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A K V+ E +G+ + V A+ + +++ E
Sbjct: 244 CAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAE 276
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 127/289 (43%), Gaps = 42/289 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ ++ + +GESKG+ FV F ++E A KAI++L
Sbjct: 101 IFIKNLDKTIDNKMLYDTFSAFGNILSCKVNVNL-AGESKGYGFVHFETEEAAVKAIEKL 159
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ K + +++ +FI N+P W + + +V + G V
Sbjct: 160 DGMLMNDKKVFVGRFKSRGERVREYGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHG-SV 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
++ L D SR F FV + + CA+ +K+ + F +G + A K+
Sbjct: 219 MSVALATDENGKSRQ--FGFVSFETHECAEKVVEKLHDKEF--EGKKIFVGRAQKKA--- 271
Query: 275 HSAAASQVKA---------------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
A +VK LYVKN+ D+ + + ++E F +G +T KV+
Sbjct: 272 ERQAELKVKFEKLKHERNQRYQGVNLYVKNLDDSITDDILREHFAPYGNITSSKVMTDTD 331
Query: 318 KSGKRD--FGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
G R FGF+ + A KAV + I + L V LA+ + ++K
Sbjct: 332 VEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPLYVALAQRKDERK 380
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK--ESGESKGFAFVSFRSKEFAKK 163
G +++ L +++ LR+ P G++ ++M D E SKGF FV F S E A K
Sbjct: 294 GVNLYVKNLDDSITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATK 353
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
A+ E++ + + K + +L++ K+
Sbjct: 354 AVTEMNGRIIASKPLYVALAQRKD 377
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 127/266 (47%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + +KELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 190 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVE 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E+ G+ + V A+ + +++ E
Sbjct: 250 EMNGKEMSGKAIFVGRAQKKVERQAE 275
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTI----------RCSLSETKNRLFIGNVPKNWTED----EFRKVIEDVGPGV 214
+ L + + R + K + F KN+ E+ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++D + +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRD--SSGKSKGFGFVSYEKHEDANKAVEEM-NGK-EMSGKAIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ + +L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 127/266 (47%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + +KELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 190 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVE 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E+ G+ + V A+ + +++ E
Sbjct: 250 EMNGKEMSGKAIFVGRAQKKVERQAE 275
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 134/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTI----------RCSLSETKNRLFIGNVPKNWTED----EFRKVIEDVGPGV 214
+ L + + R + K + F KN+ E+ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++D + +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRD--SSGKSKGFGFVSYEKHEDANKAVEEM-NGK-EMSGKAIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ + +L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ R+ G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 133/275 (48%), Gaps = 16/275 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P N + +++G L +E L +L IG V +R+ +D + S G+A+V++ + +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGE 114
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ + GNV KN K + D I
Sbjct: 115 KALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 174
Query: 219 LIKDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHS 276
K Q+ + ++G+ FV Y + A Q + + N L+ + PK D
Sbjct: 175 SCKVAQDETGASKGYGFVHYETDEAAS---QAIKHVNGMLLNEKKVYVGHHIPKK--DRQ 229
Query: 277 AAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
+ ++KA +YVKNI + + + ++LF+++G+VT + + GK R FGF+++
Sbjct: 230 SKFEEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTT 289
Query: 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA KAV + + GQ L V A+ + +++ E
Sbjct: 290 HESASKAVDELNNKDFHGQDLYVGRAQKKHEREEE 324
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 147/372 (39%), Gaps = 74/372 (19%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + D +E+D R L E GDV L +D+E G+S+GF
Sbjct: 225 KKDRQSKFEEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQE-GKSRGFG 283
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
FV+F + E A KA+DEL++K+ G+ L++G K +E
Sbjct: 284 FVNFTTHESASKAVDELNNKDFHGQD-----------LYVGRAQKKHEREE--------- 323
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271
EL K + R G N C + K++ TPT + K
Sbjct: 324 ------ELRKSYEAARRGEGQQM----NKECGSITSTKVMR-------ETPTEVVEEKKE 366
Query: 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAE 331
+ + VK P S ++ KE + K GKS + FGF+ ++
Sbjct: 367 KAETVKENQEEVKDEVKEEPKEESKDETKEGEEDKKAEKKSDKKLGKS--KGFGFVCFSN 424
Query: 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE-------------------GTFP-- 370
A KAV + + +G+ L V LA+ + +K++ P
Sbjct: 425 PDDATKAVAEMNQRMFNGKPLYVALAQRKDVRKSQLEASIQARNQIRMQQAVAHAGMPQQ 484
Query: 371 -------YSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRG----PMPS 419
++PG P +P G G P G +G G F P GRG MP
Sbjct: 485 YMQPPVYFAPGQQPGFMPQGGRG--VPFPQGGMGMPQGRPGQFPYPQQGGRGGVPQQMPP 542
Query: 420 GMHMVPMVLPDG 431
M+ +P P G
Sbjct: 543 NMYGMPGQFPPG 554
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 129/273 (47%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 47 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 106
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 107 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 166
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + S D +
Sbjct: 167 CKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 222
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +YVKNI + E+ +ELF + G++T + SGK R FGF++Y +
Sbjct: 223 FEEMKANFTNVYVKNIDPEVTDEEFRELFGKFGDITSATISRDDSGKSRGFGFVNYVDHE 282
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A AV D + GQ L V A+ + +++ E
Sbjct: 283 NAQTAVDDLNDKDFHGQKLYVGRAQKKHEREEE 315
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 140 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 198
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K +++ N+ T++EFR++ G +
Sbjct: 199 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYVKNIDPEVTDEEFRELFGKFGD-I 257
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ + +D + ++RGF FV Y ++ A + + + +F G + A K
Sbjct: 258 TSATISRD--DSGKSRGFGFVNYVDHENAQTAVDDLNDKDFH--GQKLYVGRAQKKHERE 313
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
+ A+ Q LYVKN+ D+ EK++ELF G +T
Sbjct: 314 EELRRQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSAFGTIT 361
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 65/118 (55%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + + ++E+ R+L GD+ + +D +SG+S+GF
Sbjct: 216 KKDRQSKFEEMKANFTNVYVKNIDPEVTDEEFRELFGKFGDITSATISRD-DSGKSRGFG 274
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIE 208
FV++ E A+ A+D+L+ K+ G+ +L++G K+ E+E R+ E
Sbjct: 275 FVNYVDHENAQTAVDDLNDKDFHGQ-----------KLYVGRAQKKHEREEELRRQYE 321
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 45/127 (35%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD------------------------ 141
G +++ L D +E LR+L G + ++M+D
Sbjct: 333 GVNLYVKNLTDDVDDEKLRELFSAFGTITSAKVMRDTVGAGSDSEKEETKESSEEVEEPK 392
Query: 142 ---------------------KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
K G+SKGF FV F S + A KA+ E++ + + GK +
Sbjct: 393 EEETNAKTEDEDKTDAKKSDKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 452
Query: 181 SLSETKN 187
+L++ K+
Sbjct: 453 ALAQRKD 459
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 129/269 (47%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS----AA 278
+ +RGF FV + A Q+ +N + N + KS + + A
Sbjct: 131 VCDEHGSRGFGFVHFETYEAA----QQAINTMNGMLLNDRKVFVGHFKSRRERAAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V + SG+ R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDSSGRSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ G++L A+ + +++ E
Sbjct: 247 AVVHMNGKEVSGRLLYASRAQKRVERQNE 275
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRD-SSGRSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FV+F E A+KA+ ++ KE+ G+ + S ++ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKR 269
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 127/290 (43%), Gaps = 35/290 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ +++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETYEAAQQAINTM 158
Query: 169 HSKELKGKTI--------RCSLSETKNR------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + R +E R +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKML 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
++++++D + R+R F FV + + + +++ +++ N K + G S A +
Sbjct: 219 -SVKVMRD--SSGRSRCFGFVNFEKH---EEAQKAVVHMNGKEVSGRLLYASRAQKRVER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
+ Q LYVKN+ D+ K+++ F +G +T + S
Sbjct: 273 QNELKRRFEQMKQDRLSRYQGVNLYVKNLDDSIDDGKLRKEFSPYGVITSAKVMTEGSHS 332
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 10/148 (6%)
Query: 39 GDGNFEENDDDEEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQ 98
G NFE++++ ++ G + A+R E ++ + +D ++
Sbjct: 234 GFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRRFEQMKQDRLSRY-- 291
Query: 99 LLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK 158
G +++ L + LR P G + ++M E SKGF FV F S
Sbjct: 292 ------QGVNLYVKNLDDSIDDGKLRKEFSPYGVITSAKVMT--EGSHSKGFGFVCFSSP 343
Query: 159 EFAKKAIDELHSKELKGKTIRCSLSETK 186
E A KA+ E++ + + K + +L++ K
Sbjct: 344 EEATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 132/275 (48%), Gaps = 16/275 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 56 PQNSASLYVGELDPAVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGE 115
Query: 163 KAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ + GNV KN K + D I
Sbjct: 116 KALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 175
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHS 276
K Q+ + N +G+ FV Y + A Q + + N L+ + PK D
Sbjct: 176 SCKVAQDENGNSKGYGFVHYETDEAA---AQAIKHVNGMLLNEKKVYVGHHIPKK--DRQ 230
Query: 277 AAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
+ ++KA +YVKNI + + ++LF+++G+VT + + GK R FGF+++
Sbjct: 231 SKFEEMKANFTNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKSRGFGFVNFTT 290
Query: 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA KAV + + GQ L V A+ + +++ E
Sbjct: 291 HESAAKAVDELNGKDFRGQDLYVGRAQKKHEREEE 325
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E+G SKG+ FV + + E A +AI +
Sbjct: 150 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 208
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K +++ N+ TED+FR++ E G V
Sbjct: 209 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNISPEATEDDFRQLFEQYG-DV 267
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L +D + ++RGF FV + + A + ++ +F+ G + A K +
Sbjct: 268 TSSSLARDQE--GKSRGFGFVNFTTHESAAKAVDELNGKDFR--GQDLYVGRAQKKHERE 323
Query: 275 HSA-----AASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVT 310
AA KA LY+KN+ D+ +K++++F G +T
Sbjct: 324 EELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKLRQMFSEFGPIT 371
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 134/270 (49%), Gaps = 14/270 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ ++IG L +E L +L IG V +R+ +D + S G+A+V+F + E +KA+D
Sbjct: 69 ASLYIGELDPMVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 128
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
EL+ +KG+ R S+ + ++ GNV KN K + D I K
Sbjct: 129 ELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKV 188
Query: 223 PQNPSRN-RGFSFVLY----YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
+ N +G+ FV + NA ++ +LN G+ IS D +S A
Sbjct: 189 AVDELGNSKGYGFVHFDSVDSANAAIEHVNGMLLNDKKVYVGH--HISRRDRQS--KFEA 244
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
+ +YVKN+ +T+ E+ +LF+++G++T + + +GK R F F+++A SA
Sbjct: 245 LKANFTNVYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKDNAGKFRGFAFVNFATHDSAQ 304
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+AV + +E G+ L V A+ + +++ E
Sbjct: 305 QAVDELNDFEYKGKKLYVGRAQKKHERQEE 334
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 125/286 (43%), Gaps = 35/286 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G + ++ D E G SKG+ FV F S + A AI+ +
Sbjct: 159 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNSKGYGFVHFDSVDSANAAIEHV 217
Query: 169 HSKELKGKTIRC--------------SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + +L +++ N+ + TE+EF K+ E G +
Sbjct: 218 NGMLLNDKKVYVGHHISRRDRQSKFEALKANFTNVYVKNLDLDTTEEEFTKLFEKYGK-I 276
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPK--S 271
++ L KD N + RGF+FV N A D ++Q + N F+ G + A K
Sbjct: 277 TSLSLAKD--NAGKFRGFAFV---NFATHDSAQQAVDELNDFEYKGKKLYVGRAQKKHER 331
Query: 272 TPDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
+ Q+K L+VKN+ D E++K F G +T VM +
Sbjct: 332 QEELRKQYEQMKLEKINKYQGVNLFVKNLQDEIDDERLKSEFSAFGTITSAKVMTDENNK 391
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ Y+ A KA+ + + + G+ L V LA+ + ++++
Sbjct: 392 SKGFGFVCYSNPEEATKAIAEMNQRMLAGKPLYVALAQRKEVRRSQ 437
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L + +E L+ G + ++M D E+ +SKGF FV + + E A KAI
Sbjct: 352 GVNLFVKNLQDEIDDERLKSEFSAFGTITSAKVMTD-ENNKSKGFGFVCYSNPEEATKAI 410
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + L GK + +L++ K
Sbjct: 411 AEMNQRMLAGKPLYVALAQRK 431
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 144/313 (46%), Gaps = 32/313 (10%)
Query: 64 QSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDL 123
QS N ND TP+ S +H+ + +++G L +E L
Sbjct: 36 QSESGNDNDASTPY---------SASPSTAAQHS---------ASLYVGELDPSVTEAML 77
Query: 124 RDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183
+L IG V +R+ +D + S G+A+V++ + ++A+++L+ +KG+ R S
Sbjct: 78 FELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTSIKGRPCRIMWS 137
Query: 184 E---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRN-RGFSFVLYY 238
+ + GNV KN K + D I K Q+ N +G+ FV Y
Sbjct: 138 QRDPALRKTGQGNVFIKNLDAAIDNKALHDTFSQFGNILSCKVAQDELGNSKGYGFVHY- 196
Query: 239 NNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA----LYVKNIPDNT 294
A+ + Q + + N L N + + D + ++KA +Y+KNI ++
Sbjct: 197 --ETAEAANQAIKSVNGMLL-NDKKVFVGHHIAKRDRQSKLEEMKANFTNVYIKNIDESV 253
Query: 295 STEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353
S E+ +LF+ +GEV + ++GK R FGF+++A SA KAV++ E G+ L
Sbjct: 254 SDEEFTKLFEPYGEVVSATITRDENGKSRGFGFVNFASHESAAKAVEELNDKEFHGKKLY 313
Query: 354 VVLAKPQTDKKTE 366
V A+ + +++ E
Sbjct: 314 VGRAQKKHEREEE 326
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
++D+ ++L + N + V+I + + S+E+ L EP G+V + +D E+G+S+GF
Sbjct: 227 KRDRQSKLEEMKANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRD-ENGKSRGFG 285
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV+F S E A KA++EL+ KE GK +L++G K E+E R+ E
Sbjct: 286 FVNFASHESAAKAVEELNDKEFHGK-----------KLYVGRAQKKHEREEELRRQYE 332
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 132/269 (49%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKM----LNANFKLDGNTPTISWADPKSTPDHSAA 278
+ + +RG+ FV + + A+ + M LN GN + + ++ A
Sbjct: 131 VCDENGSRGYGFVHFETHEAANRAIATMNGMLLNDRKVFVGNFKS----RREREAEYGAK 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +Y+KN + S E+++E F G+ V VM + FGF+++ + A K
Sbjct: 187 AMEFTNVYIKNFGEEMSNERLQETFSIFGKTLSVKVMTDNIGRSKGFGFVNFEKHQDAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV+D EI+G++L V A+ + ++++E
Sbjct: 247 AVEDMNGKEINGRMLYVGRAQKRMERQSE 275
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 124/290 (42%), Gaps = 35/290 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ +++ D E+G S+G+ FV F + E A +AI +
Sbjct: 101 IFIKNLDDSIDNKALYDTFSAFGNILSCKVVCD-ENG-SRGYGFVHFETHEAANRAIATM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + + + ++ G +
Sbjct: 159 NGMLLNDRKVFVGNFKSRREREAEYGAKAMEFTNVYIKNFGEEMSNERLQETFSIFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++++ D N R++GF FV + + A + + M N +++G + A +
Sbjct: 219 -SVKVMTD--NIGRSKGFGFVNFEKHQDAQKAVEDM-NGK-EINGRMLYVGRAQKRMERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+ Q LYVKN+ D E++++ F +G +T VM G K
Sbjct: 274 SELKRKFEQIKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSK 333
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 334 -GFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQY 382
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVSTKPLYVALAQRK 371
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 126/292 (43%), Gaps = 54/292 (18%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L KD LRD G++ ++ D + G SKG+ F+ F ++ AK+AI+++
Sbjct: 133 IFIKNLDKDIDTVALRDTFAQFGNIVSAKVATDGQ-GNSKGYGFIQFDTEAAAKEAIEKV 191
Query: 169 HSKELKGKTIRCS---------LSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
+ EL K + +ETK N +F+ N+ T++E RKV E GP V ++
Sbjct: 192 NGMELNDKVVYVGPFQRRAERGTTETKFNNVFVKNLGDEVTDEELRKVFEGFGP-VTSVM 250
Query: 219 LIKDPQNPSRNRGFSFVLY-------------------------YNNACADYSRQKMLNA 253
+ KD S+ GF FV Y A R+ L A
Sbjct: 251 ISKDEDGKSK--GFGFVCYETPEDASKAVEELDGKHGEEDKKWVVCRAQKKAEREAELKA 308
Query: 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV- 312
F+ A+ + + A A+ LY+KN+ D E ++ELF+ G +T
Sbjct: 309 KFE----------AERRERMEKMAGAN----LYIKNLEDGADDETLRELFKEFGTITSCR 354
Query: 313 VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
VM R F+ ++ A +AV + + + L V LA+ + D++
Sbjct: 355 VMRDASGVSRGSAFVAFSSPEEATRAVTELNGKMVGAKPLYVALAQRKEDRR 406
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 122/253 (48%), Gaps = 21/253 (8%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L A+E L +L IG V +R+ +D + S G+A+V+F + A +AID
Sbjct: 43 TSLYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDAARAID 102
Query: 167 ELHSKELKGKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L+ + + GK IR S+ +FI N+ K+ R G + + +
Sbjct: 103 VLNFQVVNGKPIRILYSQRDPTIRKSGVGNIFIKNLDKDIDTVALRDTFAQFG-NIVSAK 161
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ D Q S +G+ F+ + A A + +K+ ++ N + + +
Sbjct: 162 VATDGQGNS--KGYGFIQFDTEAAAKEAIEKVNG----MELNDKVVYVGPFQRRAERGTT 215
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
++ ++VKN+ D + E+++++F+ G VT V++ + GK + FGF+ Y A K
Sbjct: 216 ETKFNNVFVKNLGDEVTDEELRKVFEGFGPVTSVMISKDEDGKSKGFGFVCYETPEDASK 275
Query: 338 AVKDTEKYEIDGQ 350
AV+ E+DG+
Sbjct: 276 AVE-----ELDGK 283
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 11/123 (8%)
Query: 74 DTPHVEEEEKPTASVGEDEKDKHAQLLAL----------PPNGSEVFIGGLPKDASEEDL 123
D H EE++K + + ++ A+L A G+ ++I L A +E L
Sbjct: 281 DGKHGEEDKKWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYIKNLEDGADDETL 340
Query: 124 RDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183
R+L + G + R+M+D SG S+G AFV+F S E A +A+ EL+ K + K + +L+
Sbjct: 341 RELFKEFGTITSCRVMRDA-SGVSRGSAFVAFSSPEEATRAVTELNGKMVGAKPLYVALA 399
Query: 184 ETK 186
+ K
Sbjct: 400 QRK 402
>gi|321465027|gb|EFX76031.1| hypothetical protein DAPPUDRAFT_23823 [Daphnia pulex]
Length = 177
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P V L E L L E G ++E+RL+ D + ++G+AFV+F + E AK+
Sbjct: 32 PLQCTVVCENLHNSVLEHHLIPLLEKCGTIWEIRLIMDTVTNLNRGYAFVTFTTTEAAKE 91
Query: 164 AIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
A+++LH E++G+ ++ LS ++ RLF+GN+P + ++ E G+ + + K P
Sbjct: 92 AVNQLHDFEMRGRHMKVRLSVSELRLFVGNIPNSKSKVEIMAEFNKFAAGLTEVIIYKSP 151
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKM 250
+ N GF F+ Y ++ A ++Q++
Sbjct: 152 -DLEENGGFCFLEYDSHKSASMAKQRL 177
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 146/352 (41%), Gaps = 52/352 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G + ++ D E G +KG+ FV F S E A AI+ +
Sbjct: 156 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHV 214
Query: 169 HSKELKGKTIRC--------------SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + +L ++I N+ TE EF + G +
Sbjct: 215 NGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGE-I 273
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
++ L+KD QN + RGF FV Y N+ CA + ++ + +K G + A K +
Sbjct: 274 TSLSLVKD-QN-DKPRGFGFVNYANHECAQKAVDELNDKEYK--GKKLYVGRAQKKHERE 329
Query: 275 HSA--AASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
A Q+K L++KN+ D E++K F G +T + + GK
Sbjct: 330 EELRKAYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKS 389
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY-SPGLVPTHL 380
+ FGF+ Y A KAV + + + G+ L V LA+ + ++++ +
Sbjct: 390 KGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQ 449
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRG--PMPS-----GMHMVP 425
A G YG+ G P+IYG G P+P+ GM MVP
Sbjct: 450 QVAAAAGIPAVQYGATG-----------PLIYGPGGYPIPAAVNGRGMPMVP 490
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 131/273 (47%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P + +++G L +E L +L IG V +R+ +D + S G+A+V+F + E +K
Sbjct: 63 PTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 122
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+DEL+ +KG+ R S+ + ++ GNV KN K + D I
Sbjct: 123 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILS 182
Query: 220 IKDPQNPSRN-RGFSFVLY----YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
K + N +G+ FV + NA ++ +LN G+ +S + +S +
Sbjct: 183 CKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH--HVSRRERQSKVE 240
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
A + +Y+KN+ + ++ +LF + GE+T + + ++ K R FGF++YA
Sbjct: 241 --ALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHE 298
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A KAV + E G+ L V A+ + +++ E
Sbjct: 299 CAQKAVDELNDKEYKGKKLYVGRAQKKHEREEE 331
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L + +E L+ G + ++M D E G+SKGF FV + + E A KA+
Sbjct: 349 GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 407
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + L GK + +L++ K
Sbjct: 408 TEMNQRMLAGKPLYVALAQRK 428
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 164/378 (43%), Gaps = 52/378 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D G++ ++ D E+G+SKGF +V F E A +AID L
Sbjct: 125 IFIKNLHPDIDNKALYDTFSVFGNILSSKVATD-ETGKSKGFGYVHFEEDESASEAIDAL 183
Query: 169 HSKELKGKTIRC-----------SLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I E K ++I N+ T+ EF +++ G
Sbjct: 184 NGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGK-T 242
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++ L + P+ N+GF FV + N+ A +++ N FK G ++ A K
Sbjct: 243 DSVVLERTPE--GENKGFGFVNFVNHEDAVKCVEELNNTEFK--GQPLYVNRAQKKYERQ 298
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+T A Q L++KN+ D+ +K++E F +G +T + ++GK
Sbjct: 299 QELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKS 358
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++ + +
Sbjct: 359 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ---------LAQQIQ 409
Query: 382 HAGYGGF-AGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQP 440
F + + G+ F PM YG P P G VP P+ Q+ + P
Sbjct: 410 ARNQMRFQQASAAAAAAAAAGMPGQFMPPMFYGVMP-PRG---VPFNGPNPQMANMGAMP 465
Query: 441 GVQMPPPRPRRVDRSNGP 458
MPP + R NGP
Sbjct: 466 KNGMPPHQFR-----NGP 478
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 129/270 (47%), Gaps = 14/270 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F + AK AI+
Sbjct: 35 ASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIE 94
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
+L+ +KGK R S+ L GN+ KN D K + D I K
Sbjct: 95 KLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKV 154
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ + +++GF +V + D S + ++A + N I S + + +
Sbjct: 155 ATDETGKSKGFGYVHFEE----DESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEE 210
Query: 282 VKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
+KA +Y+KNI T+ ++ +EL + G+ VV+ G+ + FGF+++ A+
Sbjct: 211 MKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAV 270
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
K V++ E GQ L V A+ + +++ E
Sbjct: 271 KCVEELNNTEFKGQPLYVNRAQKKYERQQE 300
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L ++ L + P G + ++M E+G+SKGF FV F + E A KAI
Sbjct: 318 GINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTT-ENGKSKGFGFVCFSTPEEATKAI 376
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 377 TEKNQQIVAGKPLYVAIAQRKD 398
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 133/279 (47%), Gaps = 28/279 (10%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L ++ PIG V +R+ +D S +S G+A+V++ E +KA
Sbjct: 50 NSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKA 109
Query: 165 IDELHSKELKGKTIRCSLSET--------KNRLFIGN----VPKNWTEDEFRKVIEDVGP 212
I+EL+ ++G+ R S+ +FI N + D F + +
Sbjct: 110 IEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSC 169
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
V T E +++ F FV Y A+ + + N N L N + S
Sbjct: 170 KVATDEF-------GQSKCFGFVHY---ETAEAAEAAIENVNGMLL-NDREVFVGKHISK 218
Query: 273 PDHSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFI 327
D + ++KA +YVKNI N S E ++LF G++T + + + GK + FGF+
Sbjct: 219 KDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFV 278
Query: 328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
++ + SA+KAV++ EI+GQ + V A+ + ++ E
Sbjct: 279 NFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEE 317
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 131/285 (45%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D E G+SK F FV + + E A+ AI+ +
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVHYETAEAAEAAIENV 200
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK I E+K +++ N+ N++E+ F K+ G +
Sbjct: 201 NGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGK-I 259
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD +++GF FV + ++ A + +++ + +++G + A K
Sbjct: 260 TSIYLEKD--QDGKSKGFGFVNFEDHESAVKAVEELNDK--EINGQKIYVGRAQKKRERL 315
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ A Q L+VKN+ D +EK++E F+ G +T + ++GK
Sbjct: 316 EELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKS 375
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ + A KA+ + I+G+ L V LA+ + ++++
Sbjct: 376 KGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQ 420
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L E L + +P G + ++M D E+G+SKGF FV F + E A KAI
Sbjct: 335 GVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTPEEATKAI 393
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++++ + GK + +L++ K+
Sbjct: 394 TEMNTRMINGKPLYVALAQRKD 415
>gi|283838931|gb|ADB44797.1| FCA [Vitis vinifera]
Length = 281
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 97/177 (54%), Gaps = 17/177 (9%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+++F+G +P+ A+EED+R L E G+V EV L+KDK +G+ +G F+ + + E A++AI
Sbjct: 102 AKLFVGSVPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIR 161
Query: 167 ELHSK-ELKGKT----IRCS------LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
LH++ L G +R + L + +LF+G++ K TE E +++ G VE
Sbjct: 162 ALHNQYTLPGGVGPIEVRYADGERERLGAVEYKLFVGSLNKQATEKEVKEIFSPYGQ-VE 220
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG--NTPTISWADPK 270
+ L++D SR GF + + A A + LN + + G T+ +ADPK
Sbjct: 221 DVYLMRDELKQSRGCGFVNFSHRDMAMAAIN---ALNGIYTMKGCDQPLTVRFADPK 274
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 92/184 (50%), Gaps = 11/184 (5%)
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
+LF+G+VP+ TE++ R + E+ G +E + LIKD + + +G F+ Y + A+ +
Sbjct: 103 KLFVGSVPRTATEEDIRPLFEEHGNVLE-VALIKDKRT-GQQQGCCFIKYATSEEAERAI 160
Query: 248 QKMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
+ + N G P + +AD + A + K L+V ++ + +++KE+F +
Sbjct: 161 RALHNQYTLPGGVGPIEVRYADGER---ERLGAVEYK-LFVGSLNKQATEKEVKEIFSPY 216
Query: 307 GEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEK-YEIDG--QVLEVVLAKPQTD 362
G+V V +M R GF++++ R A+ A+ Y + G Q L V A P+
Sbjct: 217 GQVEDVYLMRDELKQSRGCGFVNFSHRDMAMAAINALNGIYTMKGCDQPLTVRFADPKRP 276
Query: 363 KKTE 366
+ E
Sbjct: 277 RPGE 280
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 133/277 (48%), Gaps = 16/277 (5%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P + +++G L +E L +L IG V +R+ +D + S G+A+V++ +
Sbjct: 56 AHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTID 115
Query: 161 AKKAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVET 216
+KA++EL+ +KG+ R S+ + GNV KN K + D
Sbjct: 116 GEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGN 175
Query: 217 IELIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPD 274
I K Q+ S N +G+ FV Y + A Q + + N L+ + PK D
Sbjct: 176 ILSCKVAQDESGNSKGYGFVHYETDEAAS---QAIKHVNGMLLNEKKVFVGHHIPKK--D 230
Query: 275 HSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHY 329
+ ++KA +YVKNIP + + ++ +ELF++ G+VT + ++GK R FGF+++
Sbjct: 231 RQSKFEEMKANFTNIYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRGFGFVNF 290
Query: 330 AERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A AV + + GQ L V A+ + +++ E
Sbjct: 291 INHEHASAAVDELNGKDFMGQDLYVGRAQKKHEREEE 327
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D ESG SKG+ FV + + E A +AI +
Sbjct: 152 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ESGNSKGYGFVHYETDEAASQAIKHV 210
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K +++ N+P + T+D+FR++ E G V
Sbjct: 211 NGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPADATDDQFRELFEKFG-DV 269
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L +D +NRGF FV + N+ A + ++ +F G + A K
Sbjct: 270 TSASLARD--EAGKNRGFGFVNFINHEHASAAVDELNGKDFM--GQDLYVGRAQKKHERE 325
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
+ A+ Q LYVKN+ D+ EK++ELF +G +T
Sbjct: 326 EELRKSYEAARIEKASKYQGVNLYVKNLEDDVDDEKLRELFAPYGAIT 373
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
G+SKGF FV F + + A KA+ E++ + + GK + +L++ K+
Sbjct: 447 GKSKGFGFVCFNNPDEATKAVTEMNQRMVNGKPLYVALAQRKD 489
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 132/292 (45%), Gaps = 40/292 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID++
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDKV 159
Query: 169 HSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSR 228
+ L GK N ++ T+D+ +++ E G +IKD +
Sbjct: 160 NGMLLNGKK---------------NFGEDMTDDKLKEMFEKYGTITSHKVMIKDD---GK 201
Query: 229 NRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKSTPDHSAAAS--QVKA 284
+RGF FV + + D + Q +L N K +G + A K+ Q+K
Sbjct: 202 SRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKL 258
Query: 285 ----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAER 332
LYVKN+ D+ + E+++ F G +T KV+M G+S + FGF+ ++
Sbjct: 259 ERLSRYQGVNLYVKNLDDSINDERLRREFAPFGTITSAKVMMEDGRS--KGFGFVCFSAP 316
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAG 384
A KAV + I + L V LA+ + D+K Y L + G
Sbjct: 317 EEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG 368
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 123/267 (46%), Gaps = 36/267 (13%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
Q+ S ++G+ FV + A+ S K+ L+G
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDKV--NGMLLNGK--------------------- 167
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALKAVK 340
KN ++ + +K+KE+F+++G +T VM R FGF+ + + +A +AV
Sbjct: 168 ------KNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVL 221
Query: 341 DTEKYEI-DGQVLEVVLAKPQTDKKTE 366
+ E+ +G+ + V A+ + +++ E
Sbjct: 222 ELNGKEVAEGKCMYVGRAQKKAERQQE 248
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 266 GVNLYVKNLDDSINDERLRREFAPFGTITSAKVM--MEDGRSKGFGFVCFSAPEEATKAV 323
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 324 TEMNGRIIVTKPLYVALAQRK 344
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 123/271 (45%), Gaps = 20/271 (7%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++G L +E L DL PIG V +R+ +D + S G+A+V+F + AI++L
Sbjct: 42 LYVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYAYVNFHDHNAGRTAIEKL 101
Query: 169 HSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
+ +KG+ R S+ L FI N+ G + + ++
Sbjct: 102 NYTPIKGRPCRIMWSQRDPSLRKKGSGNVFIKNLHPAIDNKALHDTFSVFG-NILSCKIA 160
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG----NTPTISWADPKSTPDHS 276
D SR GF +++ A +N L+G P +S D +S D
Sbjct: 161 TDETGKSRKFGF---VHFEEEEAAKEAIDAINGML-LNGLEVYVAPHVSKKDRQSKLDE- 215
Query: 277 AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSA 335
S +YVKNI T+ E+ +++F +G +T V+ GK R FGF+++ + ++A
Sbjct: 216 -VKSNFTNVYVKNIDSETTQEEFEKMFSNYGAITSAVLERDNEGKLRGFGFVNFEDHNAA 274
Query: 336 LKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
LKA ++ + GQ L V A+ + ++ E
Sbjct: 275 LKACEELNDTDFKGQKLYVGRAQKKYERLQE 305
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 133/285 (46%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ D E+G+S+ F FV F +E AK+AID +
Sbjct: 130 VFIKNLHPAIDNKALHDTFSVFGNILSCKIATD-ETGKSRKFGFVHFEEEEAAKEAIDAI 188
Query: 169 HSKELKGKTIRCS-----------LSETKNR---LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G + + L E K+ +++ N+ T++EF K+ + G +
Sbjct: 189 NGMLLNGLEVYVAPHVSKKDRQSKLDEVKSNFTNVYVKNIDSETTQEEFEKMFSNYG-AI 247
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L +D N + RGF FV + ++ A + +++ + +FK G + A K
Sbjct: 248 TSAVLERD--NEGKLRGFGFVNFEDHNAALKACEELNDTDFK--GQKLYVGRAQKKYERL 303
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
S+ A Q L+VKN+ D+ +K++E F G +T V VM
Sbjct: 304 QELKKQYESSRMEKLAKYQGVNLFVKNLDDSVDDQKLEEEFAPFGTITSVKVMRDEAGNS 363
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++
Sbjct: 364 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRSQ 408
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L ++ L + P G + V++M+D E+G SKGF FV F + E A KAI
Sbjct: 323 GVNLFVKNLDDSVDDQKLEEEFAPFGTITSVKVMRD-EAGNSKGFGFVCFSTPEEATKAI 381
Query: 166 DELHSKELKGKTIRCSLSETK 186
E + + + GK + ++++ K
Sbjct: 382 TEKNQQIVAGKPLYVAIAQRK 402
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 129/271 (47%), Gaps = 16/271 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +E L +L IG V +R+ +D + S G+A+V++ + +KA++
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 120
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
EL+ +KG+ R S+ + GN+ KN K + D I K
Sbjct: 121 ELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKV 180
Query: 223 PQNPSRN-RGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAAS 280
Q+ N +G+ FV Y + A Q + + N L+ + PK D +
Sbjct: 181 AQDEHGNSKGYGFVHYETDEAAS---QAIKHVNGMLLNEKKVYVGHHIPKK--DRQSKFE 235
Query: 281 QVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSA 335
++KA +YVKNI + ++ +ELF++ GEVT + + GK R FGF+++ +A
Sbjct: 236 EMKANFTNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAA 295
Query: 336 LKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
KAV D + GQ L V A+ + +++ E
Sbjct: 296 AKAVDDLNGKDFRGQDLYVGRAQKKHEREEE 326
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 131/326 (40%), Gaps = 74/326 (22%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ +D E G SKG+ FV + + E A +AI +
Sbjct: 151 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAASQAIKHV 209
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K +++ N+ T+DEFR++ E G V
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINHEVTDDEFRELFEKFGE-V 268
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L +D + + RGF FV + + A + + +F+ G + A K +
Sbjct: 269 TSSSLARDQE--GKTRGFGFVNFTTHEAAAKAVDDLNGKDFR--GQDLYVGRAQKKHERE 324
Query: 275 HSA-----AASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPG---- 317
AA KA LY+KN+ D+ EK++ +F +G +T VM
Sbjct: 325 EELRRSYEAARLEKANKYQGVNLYIKNLGDDVDDEKLRAMFSEYGPITSAKVMRDSLIEG 384
Query: 318 ------------------------------------KSGK-RDFGFIHYAERSSALKAVK 340
K GK + FGF+ ++ A KAV
Sbjct: 385 EEKDEKDKENKKEGETKEEEEKEGSAEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVT 444
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ + +DG+ L V LA+ + +K++
Sbjct: 445 EMNQRMVDGKPLYVALAQRKDVRKSQ 470
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 81/155 (52%), Gaps = 26/155 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + + ++++ R+L E G+V L +D+E G+++GF
Sbjct: 227 KKDRQSKFEEMKANFTNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQE-GKTRGFG 285
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV+F + E A KA+D+L+ K+ +G+ + ++ K+
Sbjct: 286 FVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRRSYEAARLEKANKYQGV 345
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+I N+ + +++ R + + GP + + ++++D
Sbjct: 346 NLYIKNLGDDVDDEKLRAMFSEYGP-ITSAKVMRD 379
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 129/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D S S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ +R S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + +RG FV + A + Q M N D + K + A A +
Sbjct: 131 VCDENGSRGHGFVHFETQEAATRAIQTM-NGMLLNDRKVFVGHFKSRKEREAEFGARAME 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN D+ +++E+F R G+ V + +G+ + FGF+++ + A KAV
Sbjct: 190 FTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVA 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
D EI+G+++ V A+ + ++++E
Sbjct: 250 DMNGKEINGRMVYVGRAQKRLERQSE 275
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 133/313 (42%), Gaps = 38/313 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ +++ D E+G S+G FV F ++E A +AI +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCD-ENG-SRGHGFVHFETQEAATRAIQTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ R++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
+++++ D + R++GF FV + + + +++ + + N K ++G + A +
Sbjct: 219 -SVKVMMD--HTGRSKGFGFVNFEKH---EEAQKAVADMNGKEINGRMVYVGRAQKRLER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
+ Q LYVKN+ D E++++ F +G +T VM G
Sbjct: 273 QSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHS 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTH- 379
K FGF+ ++ A KAV + + + L V LA+ + ++K T Y L
Sbjct: 333 K-GFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRA 391
Query: 380 LPHAGYGGFAGTP 392
LP G F P
Sbjct: 392 LPGPFLGSFQPPP 404
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+ A + V+I D + LR++ G V++M D +G SKG
Sbjct: 174 KSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ +++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVADMNGKEINGRMV 261
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVSTKPLYVALAQRK 371
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 41/307 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID++
Sbjct: 144 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGASKGYGFVHFETEEAANKSIDKV 202
Query: 169 HSKELKGKTIRC-----------SLSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ TED+ + + E G
Sbjct: 203 NGMLLNGKKVYVGKFIPRKEREKELGE-KAKLFTNVYVKNFGEDMTEDKLKDMFEKYGTI 261
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKS 271
+ KD ++RGF FV + + D + Q +L N K +G + A K+
Sbjct: 262 TSHKVMSKDD---GKSRGFGFVAFED---PDAAEQAVLELNGKEIAEGKCMYVGRAQKKA 315
Query: 272 TPDHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
Q+K LYVKN+ D E++++ F G +T KV+M G
Sbjct: 316 ERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMMEEG 375
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVP 377
+S + FGF+ +++ A KAV + + + L V LA+ + D+K Y +
Sbjct: 376 RS--KGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRMAN 433
Query: 378 THLPHAG 384
+ G
Sbjct: 434 VRMQQMG 440
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F E A KA+
Sbjct: 338 GVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVM--MEEGRSKGFGFVCFSQPEEATKAV 395
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 396 TEMNGRIVGSKPLYVALAQRK 416
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 127/269 (47%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS----AA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + ++ELF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ G++L A+ + +++ E
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L++L G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDN-SGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 128/291 (43%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E +++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKML 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTP 273
++++++D N +R F FV + + + +++ +++ N K + G A +
Sbjct: 219 -SVKVMRD--NSGHSRCFGFVNFEKH---EEAQKAVVHMNGKEVSGRLLYAGRAQKRVER 272
Query: 274 DHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
+ Q+K LYVKN+ D+ +K+++ F +G +T VM G
Sbjct: 273 QNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
K FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 K-GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGTKPLYVALAQRK 371
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 127/266 (47%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + +KELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 190 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVE 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E+ G+ + V A+ + +++ E
Sbjct: 250 EMNGKEMSGKAIFVGRAQKKVERQAE 275
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 143/325 (44%), Gaps = 47/325 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTI----------RCSLSETKNRLFIGNVPKNWTED----EFRKVIEDVGPGV 214
+ L + + R + K + F KN+ E+ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++D + +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRD--SSGKSKGFGFVSYEKHEDANKAVEEM-NGK-EMSGKAIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAG 405
G P ++ F AAG
Sbjct: 387 -----AGMRALPASAILNQFQPAAG 406
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ + +L++L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ R+ G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|339248325|ref|XP_003375796.1| RNA-binding protein squid [Trichinella spiralis]
gi|316970795|gb|EFV54670.1| RNA-binding protein squid [Trichinella spiralis]
Length = 329
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 79/134 (58%), Gaps = 9/134 (6%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+GG+ D +E DL + GDV V++ D +G S+GFAFV F + E KKA+ +
Sbjct: 59 KIFVGGISWDTNENDLTNHFNQFGDVVHVQVKYDHYTGRSRGFAFVEFATAEACKKALAK 118
Query: 168 LHSKELKGKTIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+ ELKGK +C + K+R LF+G +P ++TE+ RK +E G VE IE D
Sbjct: 119 KDA-ELKGK--KCEVKPAKSRENKKLFVGGLPSDYTEELLRKHMEQFGR-VEEIEWPFDK 174
Query: 224 QNPSRNRGFSFVLY 237
N R + F+F+++
Sbjct: 175 VNNKR-KNFAFIVF 187
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 138/307 (44%), Gaps = 41/307 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID++
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGASKGYGFVHFETEEAANKSIDKV 159
Query: 169 HSKELKGKTIRC-----------SLSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ T+D+ +++ E G
Sbjct: 160 NGMLLNGKKVYVGKFIPRKEREKELGE-KAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKS 271
+ KD ++RGF FV + + D + Q +L N K +G + A K+
Sbjct: 219 TSHKVMSKDD---GKSRGFGFVAFED---PDAAEQAVLELNGKDISEGKCMYVGRAQKKA 272
Query: 272 TPDHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPG 317
Q+K LYVKN+ D E++++ F G +T KV+M G
Sbjct: 273 ERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMMEEG 332
Query: 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVP 377
+S + FGF+ +++ A KAV + + + L V LA+ + D+K Y +
Sbjct: 333 RS--KGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRMAN 390
Query: 378 THLPHAG 384
+ G
Sbjct: 391 VRMQQMG 397
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 131/269 (48%), Gaps = 11/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
Q+ S ++G+ FV + A+ S K+ L+G + P+ + A
Sbjct: 131 AQDESGASKGYGFVHFETEEAANKSIDKV--NGMLLNGKKVYVGKFIPRKEREKELGEKA 188
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALKA 338
+YVKN ++ + +K+KE+F+++G +T VM R FGF+ + + +A +A
Sbjct: 189 KLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQA 248
Query: 339 VKDTEKYEI-DGQVLEVVLAKPQTDKKTE 366
V + +I +G+ + V A+ + +++ E
Sbjct: 249 VLELNGKDISEGKCMYVGRAQKKAERQQE 277
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F E A KA+
Sbjct: 295 GVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVM--MEEGRSKGFGFVCFSQPEEATKAV 352
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 353 TEMNGRIVGSKPLYVALAQRK 373
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 132/271 (48%), Gaps = 18/271 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L ++ +G V +R+ +D + S G+A+V++ + + A +A++
Sbjct: 24 TSLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRALE 83
Query: 167 ELHSKELKGKTIRCSLSE---------TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
L+ + GK IR S T N +FI N+ K+ K + D TI
Sbjct: 84 LLNFNAVNGKPIRIMFSHRDPSIRKSGTAN-IFIKNLDKSIDN----KALHDTFAAFGTI 138
Query: 218 ELIKDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276
K +PS +++G+ FV + A + +K+ L+ + + D S
Sbjct: 139 LSCKVATDPSGQSKGYGFVQFEQEESAQTAIEKV--NGMLLNDKQVFVGPFVRRQERDQS 196
Query: 277 AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSA 335
S+ +YVKN+ D+T+ +++K++F+ +G ++ V+ GK + FGF+++ A
Sbjct: 197 GVVSKFNNVYVKNLADSTTDDELKKVFEAYGPISSAVVMRDNEGKSKCFGFVNFEHADDA 256
Query: 336 LKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
KAV+ + D + V A+ +++++ E
Sbjct: 257 AKAVEALNGKKFDEKEWYVGRAQKKSEREAE 287
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 137/308 (44%), Gaps = 42/308 (13%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +FI L K + L D G + ++ D SG+SKG+ FV F +E A+ AI+
Sbjct: 112 ANIFIKNLDKSIDNKALHDTFAAFGTILSCKVATDP-SGQSKGYGFVQFEQEESAQTAIE 170
Query: 167 ELHSKELKGKTI------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+++ L K + + + N +++ N+ + T+DE +KV E GP +
Sbjct: 171 KVNGMLLNDKQVFVGPFVRRQERDQSGVVSKFNNVYVKNLADSTTDDELKKVFEAYGP-I 229
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM--LNANFKLDGNTPTISWADPKST 272
+ +++D N +++ F FV N AD + + + LN K D + A KS
Sbjct: 230 SSAVVMRD--NEGKSKCFGFV---NFEHADDAAKAVEALNGK-KFDEKEWYVGRAQKKSE 283
Query: 273 PDHSAAAS------------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKS 319
+ A Q LY+KN+ D EK++E+F +G + VM +
Sbjct: 284 REAELRAKFEQERKERIEKYQGVNLYLKNLDDTIDDEKLREIFSEYGTIVSCKVMRDPQG 343
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKT--EGTF----PYSP 373
R GF+ ++ A +AV + + + L V LA+ + +++ + F P P
Sbjct: 344 QSRGSGFVAFSSPDEATRAVTEMNGKMVGSKPLYVALAQRKEERRNRLQAAFAQRTPVGP 403
Query: 374 GLVPTHLP 381
VPT LP
Sbjct: 404 A-VPTSLP 410
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 8/129 (6%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR++ G + ++M+D + G+S+G FV+F S + A +A+
Sbjct: 305 GVNLYLKNLDDTIDDEKLREIFSEYGTIVSCKVMRDPQ-GQSRGSGFVAFSSPDEATRAV 363
Query: 166 DELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
E++ K + K + +L++ K +N + F + VGP V T + P
Sbjct: 364 TEMNGKMVGSKPLYVALAQRKEER------RNRLQAAFAQRTP-VGPAVPTSLPMYHPAG 416
Query: 226 PSRNRGFSF 234
P G S+
Sbjct: 417 PGMGPGMSY 425
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 131/276 (47%), Gaps = 19/276 (6%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 51 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 111 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 170
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 171 CKVAQDEFGNSKGYGFV-HYETAEAATNAIKHVNGMLL---NEKKVFVGHHIAKKDRQSK 226
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP----PGKSGKRDFGFIHYA 330
++KA +YVKN+ + E+ +ELF+++GE+T + GKS R FGF+++
Sbjct: 227 FEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKS--RGFGFVNFV 284
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV+D E GQ L V A+ + +++ E
Sbjct: 285 NHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEE 320
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 164/391 (41%), Gaps = 68/391 (17%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ L + + E+ R+L E G++ L +D E+G+S+GF
Sbjct: 220 KKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFG 279
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIEDV 210
FV+F + + A A+++L+ KE KG+ +L++G K+ E+E RK E
Sbjct: 280 FVNFVNHDSAAAAVEDLNDKEYKGQ-----------KLYVGRAQKKHEREEELRKQHEAA 328
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
+ S+ +G + LY N D +K+ + T D
Sbjct: 329 -----------RVEKASKYQGVN--LYVKNLTDDIDDEKLRDLFIGFGNITSARVMRD-- 373
Query: 271 STPDHSAAASQVKALYVKNIPDNTSTEKIKEL-FQRHGEVTKVVMPP-------GKSGK- 321
T + + S+ + K+ +N E KE + E T P K GK
Sbjct: 374 -TIGDAGSESEKEKEASKDNKENVREETKKEAGGEDSAEKTDKAEKPDTKKPTDKKLGKS 432
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ FGF+ ++ A KAV + + ++G+ L V LA+ + +K++
Sbjct: 433 KGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQ--------------L 478
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMH-MVPMVLPDGQIGYVLQQP 440
A V G++ F QP +Y P G +P G + + QQP
Sbjct: 479 EASIQARNTIRQQQVAAAAGMSQPFMQPAVY----YPPGQQGFIPANAQRGGMAFA-QQP 533
Query: 441 GVQ---MPPPRPRRVDRSNGPGG---RGGRG 465
G+ MP RP + PGG +GGRG
Sbjct: 534 GMVLPGMPGGRPGQY-----PGGFPQQGGRG 559
>gi|302811484|ref|XP_002987431.1| hypothetical protein SELMODRAFT_269263 [Selaginella moellendorffii]
gi|300144837|gb|EFJ11518.1| hypothetical protein SELMODRAFT_269263 [Selaginella moellendorffii]
Length = 428
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ ++F+G +PK ++E+L + E G VF++ ++KDK + +S+G F+++ S+ A
Sbjct: 8 PDAVKLFVGQIPKHLTQEELLPIFEEAGAVFDINIIKDKSTKQSRGCCFLTYSSRSEADN 67
Query: 164 AIDELHSKE--------LKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
AID H+K+ ++ K L +++LFIG +PK+ TE E R V + G ++
Sbjct: 68 AIDLFHNKKTISPMNSPMQVKYADGELERLEHKLFIGMLPKSVTEAEVRDVFSEYG-NIK 126
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP--TISWAD 268
+++IK Q ++ F L Y + LN ++++G + + WAD
Sbjct: 127 ELQVIKGSQQTAKACAF---LKYETREEAAGAVEALNGIYRMEGASSALVVKWAD 178
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI +P + + +L G+V ++ DK +G SK F FVS+ S E A+
Sbjct: 340 PPGANLFIYHIPAEFGDSELSTAFASFGNVISAKVFVDKTTGISKCFGFVSYDSPEAAQS 399
Query: 164 AIDELHSKELKGKTIRCSL 182
AI+ ++ +L GK ++ L
Sbjct: 400 AINVMNGFQLSGKRLKVQL 418
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 127/266 (47%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 28 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 87
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 88 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 147
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 148 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 206
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + +KELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 207 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVE 266
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E+ G+ + V A+ + +++ E
Sbjct: 267 EMNGKEMSGKAIFVGRAQKKVERQAE 292
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 143/325 (44%), Gaps = 47/325 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 118 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 175
Query: 169 HSKELKGKTI----------RCSLSETKNRLFIGNVPKNWTED----EFRKVIEDVGPGV 214
+ L + + R + K + F KN+ E+ +++ G +
Sbjct: 176 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 235
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++D + +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 236 -SVKVMRD--SSGKSKGFGFVSYEKHEDANKAVEEM-NGK-EMSGKAIFVGRAQKKVERQ 290
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK++ F G +T KV++ G+S
Sbjct: 291 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRS- 349
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y +
Sbjct: 350 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV----- 403
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAG 405
G P ++ F AAG
Sbjct: 404 -----AGMRALPASAILNQFQPAAG 423
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ + +L++L G V++M+D SG+SKG
Sbjct: 191 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKG 249
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 250 FGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 309
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ R+ G +++D R++GF FV +
Sbjct: 310 GVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLED----GRSKGFGFVCF 357
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 139/306 (45%), Gaps = 25/306 (8%)
Query: 81 EEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMK 140
EE P S E+ + A S +++G L +E DL + PIG V +R+ +
Sbjct: 27 EETPATSTEAAEESNESSTQASETLAS-LYVGELDPTVTESDLYEFFSPIGSVNSIRVCR 85
Query: 141 DKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN----------RLF 190
D + S G+ +V+F S+ ++A++EL+ E+KG +RC L ++ +F
Sbjct: 86 DAVTKRSLGYGYVNFHSQAAGERALEELNYAEIKG--VRCRLMWSQRDPSLRRSGSGNIF 143
Query: 191 IGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK- 249
I N+ G V + ++ D S +GF FV Y ++ A + +
Sbjct: 144 IKNLDPAIENKTLHDTFSSFG-KVLSCKVATDENGNS--KGFGFVHYESDEAAQAAIENI 200
Query: 250 ---MLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
+LN G P ++ D +S ++VKN ++ ++++ELF+ +
Sbjct: 201 NGMLLNGREIYVG--PHLAKKDRESR--FQEMIKNYTNVFVKNFDTESTEDELRELFESY 256
Query: 307 GEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKT 365
G +T + + G + FGF+++AE A+KAV+ E G+ L V A+ + ++
Sbjct: 257 GPITSIHLQVDSEGHNKGFGFVNFAEHDDAVKAVEALNDKEYKGKPLYVGRAQKKNERVH 316
Query: 366 EGTFPY 371
E T Y
Sbjct: 317 ELTKKY 322
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 144/347 (41%), Gaps = 50/347 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G V ++ D E+G SKGF FV + S E A+ AI+ +
Sbjct: 142 IFIKNLDPAIENKTLHDTFSSFGKVLSCKVATD-ENGNSKGFGFVHYESDEAAQAAIENI 200
Query: 169 HSKELKGKTIRC--------------SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + + +F+ N TEDE R++ E GP +
Sbjct: 201 NGMLLNGREIYVGPHLAKKDRESRFQEMIKNYTNVFVKNFDTESTEDELRELFESYGP-I 259
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+I L D + N+GF FV + + A + + + + +K G + A K+
Sbjct: 260 TSIHLQVDSE--GHNKGFGFVNFAEHDDAVKAVEALNDKEYK--GKPLYVGRAQKKNERV 315
Query: 275 HSAAAS------------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H Q L++KN+ ++ +++E F+ G +T + ++GK
Sbjct: 316 HELTKKYEADRLEKLQKYQSVNLFIKNLDESIDDARLEEEFKPFGTITSAKVMLDENGKS 375
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
R FGF+ + A KA+ + + + + L V LA+P+ ++++
Sbjct: 376 RGFGFVCLSTPEEATKAISEMNQRMVANKPLYVALAQPKAIRRSQ--------------- 420
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGP--MPSGMHMVPM 426
A G G+ F QP+ YG+ P +P G + PM
Sbjct: 421 LAQQIQARNQMRMQQQAGPGIPNQFVQPIFYGQQPGMLPPGARVPPM 467
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 131/292 (44%), Gaps = 40/292 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 169 HSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSR 228
+ L GK N ++ T+D+ +++ E G +IKD +
Sbjct: 160 NGMLLNGKK---------------NFGEDMTDDKLKEMFEKYGTITSHKVMIKDD---GK 201
Query: 229 NRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKSTPDHSAAAS--QVKA 284
+RGF FV + + D + Q +L N K +G + A K+ Q+K
Sbjct: 202 SRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKL 258
Query: 285 ----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAER 332
LYVKN+ D+ E++++ F G +T KV+M G+S + FGF+ ++
Sbjct: 259 ERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEGRS--KGFGFVCFSAP 316
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAG 384
A KAV + I + L V LA+ + D+K Y L + G
Sbjct: 317 EEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG 368
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 123/267 (46%), Gaps = 36/267 (13%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
Q+ S ++G+ FV + A+ S ++ L+G
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRV--NGMLLNGK--------------------- 167
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALKAVK 340
KN ++ + +K+KE+F+++G +T VM R FGF+ + + +A +AV
Sbjct: 168 ------KNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVL 221
Query: 341 DTEKYEI-DGQVLEVVLAKPQTDKKTE 366
+ E+ +G+ + V A+ + +++ E
Sbjct: 222 ELNGKEVAEGKCMYVGRAQKKAERQQE 248
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 266 GVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVM--MEEGRSKGFGFVCFSAPEEATKAV 323
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 324 TEMNGRIIVTKPLYVALAQRK 344
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 127/269 (47%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS----AA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + ++ELF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ G++L A+ + +++ E
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L++L G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRD-NSGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
>gi|221121498|ref|XP_002156904.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Hydra
magnipapillata]
Length = 635
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 125/272 (45%), Gaps = 19/272 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++AID
Sbjct: 11 ASLYVGDLNPDVTEAMLFEKFSQTGPVLSIRVCRDLVTRRSLGYAYVNFQQPADAERAID 70
Query: 167 ELHSKELKGKTIRCSLSE---TKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KG+ R S+ T R +FI N+ KN G + + +
Sbjct: 71 TMNYDPIKGRPCRIMWSQRDPTLRRSGVGNIFIKNLDKNIDNKGLYDAFSAFG-NILSCK 129
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQK----MLNANFKLDGNTPTISWADPKSTPD 274
+ D +N SR G+ FV Y A + K MLN G + +
Sbjct: 130 IAVDSKNVSR--GYGFVHYETKEAAHEAIAKVNGMMLNDKKVFVGEF----MSKRERLEK 183
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSS 334
A + K ++VKN D+ EK+KE+F +HGE+T V+ + FGF+ + +
Sbjct: 184 LGDQAKKFKNVFVKNFGDSLDEEKLKEMFGKHGEITSCVVMAESGKSKGFGFVAFEAPEA 243
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A AV + EI+G+ L V A+ + ++ E
Sbjct: 244 AEAAVNELNGLEIEGRKLVVCRAQKKAERTME 275
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/317 (20%), Positives = 132/317 (41%), Gaps = 40/317 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K+ + L D G++ ++ D ++ S+G+ FV + +KE A +AI ++
Sbjct: 101 IFIKNLDKNIDNKGLYDAFSAFGNILSCKIAVDSKN-VSRGYGFVHYETKEAAHEAIAKV 159
Query: 169 HSKELKGKTIRC-SLSETKNRL-------------FIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + RL F+ N + E++ +++ G
Sbjct: 160 NGMMLNDKKVFVGEFMSKRERLEKLGDQAKKFKNVFVKNFGDSLDEEKLKEMFGKHGEIT 219
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ + + +++GF FV + A+ + ++ +++G + A K+
Sbjct: 220 SCVVMAES----GKSKGFGFVAFEAPEAAEAAVNEL--NGLEIEGRKLVVCRAQKKAERT 273
Query: 275 HSAAAS------------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+ Q LY+KN+ D E+++ F +G +T VM K
Sbjct: 274 MELKSRFEAQKMERINRYQGVNLYIKNLEDGLDDERLRSEFSTYGTITSAKVMKDEKGIS 333
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTH-- 379
+ FGF+ ++ A KAV + + + L V LA+ + +++ + + + + P
Sbjct: 334 KGFGFVCFSSPDEATKAVTEMNGRILVTKPLYVALAQRKEERRAQLSTQFLQRVNPLRYN 393
Query: 380 ----LPHAGYGGFAGTP 392
+P AGY AG P
Sbjct: 394 ASGTMPQAGYSFQAGQP 410
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L +E LR G + ++MKD E G SKGF FV F S + A KA+
Sbjct: 293 GVNLYIKNLEDGLDDERLRSEFSTYGTITSAKVMKD-EKGISKGFGFVCFSSPDEATKAV 351
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + L K + +L++ K
Sbjct: 352 TEMNGRILVTKPLYVALAQRK 372
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 130/270 (48%), Gaps = 18/270 (6%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++G L +E L ++ IG V +R+ +D + S G+A+V++ + ++A+++L
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 169 HSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
+ +KG+ R S+ + +FI N+ + G V + ++
Sbjct: 110 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFAAFG-NVLSCKVA 168
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT---PTISWADPKSTPDHSA 277
D R++G+ FV Y AD + K +N D P IS + +S +
Sbjct: 169 TDEH--GRSKGYGFVHYETAEAAD-TAIKAVNGMLLNDKKVYVGPHISRKERQSKIEEMK 225
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
A Q +YVKNI + E+ ++LF++ G VT V+ + G+ + FGF+++ + A
Sbjct: 226 A--QFTNVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDEEGRSKGFGFVNFEKHEEAQ 283
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
K V+ +E++G+ L V A+ + +++ E
Sbjct: 284 KGVESLHDFELNGKKLFVTRAQKKAEREEE 313
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 125/277 (45%), Gaps = 33/277 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + + L D G+V ++ D E G SKG+ FV + + E A AI +
Sbjct: 138 IFIKNLDEGIDNKALHDTFAAFGNVLSCKVATD-EHGRSKGYGFVHYETAEAADTAIKAV 196
Query: 169 HSKELKGKTI-----------RCSLSETKNR---LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + + E K + +++ N+ T++EFR++ E G V
Sbjct: 197 NGMLLNDKKVYVGPHISRKERQSKIEEMKAQFTNVYVKNIDAEVTDEEFRQLFEQFG-NV 255
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ + +D + R++GF FV + + A + + +F+L+G ++ A K+ +
Sbjct: 256 TSAVIQRDEE--GRSKGFGFVNFEKHEEAQKGVESL--HDFELNGKKLFVTRAQKKAERE 311
Query: 275 HSAAASQVKA------------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
S +A LY+KN+ D E++++ F+ G +T VM K
Sbjct: 312 EELRKSYEQAKNEKLSKYQGVNLYIKNLEDEVDDERLRQEFEPFGTITSAKVMRDEKGSS 371
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
+ FGF+ ++ A KAV + I + L V LA+
Sbjct: 372 KGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQ 408
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Query: 79 EEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL 138
EEE + + ++EK Q G ++I L + +E LR EP G + ++
Sbjct: 311 EEELRKSYEQAKNEKLSKYQ-------GVNLYIKNLEDEVDDERLRQEFEPFGTITSAKV 363
Query: 139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
M+D E G SKGF FV F S + A KA+ E+++K + K + SL++ +
Sbjct: 364 MRD-EKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRR 410
>gi|302786984|ref|XP_002975262.1| hypothetical protein SELMODRAFT_442777 [Selaginella moellendorffii]
gi|300156836|gb|EFJ23463.1| hypothetical protein SELMODRAFT_442777 [Selaginella moellendorffii]
Length = 427
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ ++F+G +PK ++E+L + E G VF++ ++KDK + +S+G F+++ S+ A
Sbjct: 8 PDAVKLFVGQIPKHLTQEELLPIFEEAGAVFDINIIKDKSTKQSRGCCFLTYSSRSEADN 67
Query: 164 AIDELHSKE--------LKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
AID H+K+ ++ K L +++LFIG +PK+ TE E R V + G ++
Sbjct: 68 AIDLFHNKKTISPMNSPMQVKYADGELERLEHKLFIGMLPKSVTEAEVRDVFSEYG-NIK 126
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP--TISWAD 268
+++IK Q ++ F L Y + LN ++++G + + WAD
Sbjct: 127 ELQVIKGSQQTAKACAF---LKYETREEAAGAVEALNGIYRMEGASSALVVKWAD 178
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G+ +FI +P + + +L G+V ++ DK +G SK F FVS+ S E A+
Sbjct: 339 PPGANLFIYHIPAEFGDSELSTAFASFGNVISAKVFVDKTTGISKCFGFVSYDSPEAAQS 398
Query: 164 AIDELHSKELKGKTIRCSL 182
AI+ ++ +L GK ++ L
Sbjct: 399 AINVMNGFQLSGKRLKVQL 417
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 129/273 (47%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 42 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 101
Query: 164 AIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ L GNV KN K + D I
Sbjct: 102 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNILS 161
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + S D +
Sbjct: 162 CKVAQDEFANSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 217
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +Y+KNI + ++ + +F+ GE+T + + GK R FGF++YA
Sbjct: 218 FEEMKANFTNIYIKNIDLEITDDEFRTMFEAFGEITSATLSHDQDGKSRGFGFVNYANHE 277
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV + + E+ Q L V A+ + +++ E
Sbjct: 278 SAEAAVAEMNEKEVKSQKLYVGRAQKKHEREEE 310
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 96/228 (42%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E SKG+ FV + + E A AI +
Sbjct: 135 VFIKNLDNAIDNKALHDTFAAFGNILSCKVAQD-EFANSKGYGFVHYETAEAANNAIKHV 193
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K ++I N+ T+DEFR + E G +
Sbjct: 194 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDLEITDDEFRTMFEAFGE-I 252
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L D ++RGF FV Y N+ A+ + +M K + A K +
Sbjct: 253 TSATLSHD--QDGKSRGFGFVNYANHESAEAAVAEMNEKEVK--SQKLYVGRAQKKHERE 308
Query: 275 HSA-----AASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVT 310
AA KA LYVKN+ D+ EK+++LF +G +T
Sbjct: 309 EELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEKLRDLFTPYGTIT 356
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 131 GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
G+ E + + K G+SKGF FV F S + A KA+ E++ + + GK + +L++ K+
Sbjct: 410 GEATEEKKTEKKAFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKD 466
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 128/273 (46%), Gaps = 21/273 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++ ++
Sbjct: 316 ASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNFQQLADAERVLE 375
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK +R S+ L FI N+ K+ K G + + +
Sbjct: 376 TMNLDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLEKSIDNKALYKTFSAFG-NILSCK 434
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH--- 275
+I D ++G+ FV + N AD + +KM N + KS +
Sbjct: 435 VISDENG---SKGYGFVHFENQQAADKAIEKMNGVRL----NNLKVYVGRFKSRKERELE 487
Query: 276 -SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
A A + +Y+KN ++ +++ E+F + G V + +SGK + FGF+ Y +
Sbjct: 488 LGARAREFTNVYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTDESGKSKGFGFVSYEKHE 547
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A +AV + E +G+ + V A+ + +++TE
Sbjct: 548 DAQRAVDEMNGKEFNGKRIYVGRAQKKGERQTE 580
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 129/293 (44%), Gaps = 41/293 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L G++ +++ D E+G SKG+ FV F +++ A KAI+++
Sbjct: 406 IFIKNLEKSIDNKALYKTFSAFGNILSCKVISD-ENG-SKGYGFVHFENQQAADKAIEKM 463
Query: 169 HSKELKGKTIRCSLSETKNR----------------LFIGNVPKNWTEDEFRKVIEDVGP 212
+ L ++ + K+R ++I N ++ D +V G
Sbjct: 464 NGVRLN--NLKVYVGRFKSRKERELELGARAREFTNVYIKNFGEDMDNDRLTEVFGKFGH 521
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-- 270
+ +++++ D +++GF FV Y + A + +M F +G + A K
Sbjct: 522 AL-SVKVMTD--ESGKSKGFGFVSYEKHEDAQRAVDEMNGKEF--NGKRIYVGRAQKKGE 576
Query: 271 ----------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGK 318
++ Q LYVKN+ D+ E++++ F G +T KV+M G
Sbjct: 577 RQTELKRHFEQVKQERSSRYQGVNLYVKNLDDSIDDERLRKAFSPFGTITSAKVMMEGGH 636
Query: 319 SGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
S R FGF+ ++ A KAV + + + L V LA+ + D++ T Y
Sbjct: 637 S--RGFGFVCFSAPEEAAKAVSEMNGKLVATKPLYVALAQRKRDRQVHLTNQY 687
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ +L A + V+I +D + L ++ G V++M D ESG+SKG
Sbjct: 479 KSRKERELELGARAREFTNVYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTD-ESGKSKG 537
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN---------------------- 187
F FVS+ E A++A+DE++ KE GK I ++ K
Sbjct: 538 FGFVSYEKHEDAQRAVDEMNGKEFNGKRIYVGRAQKKGERQTELKRHFEQVKQERSSRYQ 597
Query: 188 --RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ + ++ RK G TI K +RGF FV +
Sbjct: 598 GVNLYVKNLDDSIDDERLRKAFSPFG----TITSAKVMMEGGHSRGFGFVCF 645
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G S+GF FV F + E A KA+
Sbjct: 598 GVNLYVKNLDDSIDDERLRKAFSPFGTITSAKVM--MEGGHSRGFGFVCFSAPEEAAKAV 655
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ K + K + +L++ K
Sbjct: 656 SEMNGKLVATKPLYVALAQRK 676
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 128/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAANKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + E ++ELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVE 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E+ G+ + V A+ + +++ E
Sbjct: 250 EMNGKEMSGKSIFVGRAQKKVERQAE 275
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 134/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ R++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++D S+ GF FV Y + A+ + ++M N ++ G + + A K
Sbjct: 219 -SVKVMRDCSGKSK--GFGFVSYEKHEDANKAVEEM-NGK-EMSGKSIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+LR+L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK+I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 142/331 (42%), Gaps = 37/331 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VF+ L L DL + G++ +++ + G+SKG+ FV F S+E A AI++L
Sbjct: 102 VFVKNLAGSIDNAGLHDLFQKYGNILSSKVVMSGD-GKSKGYGFVQFESEESANNAIEKL 160
Query: 169 HSKEL------------KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+ + KG I L+I N+ + TE ++ G +
Sbjct: 161 NGSTVGDKQIYVGKFVRKGDRILPGYDAKYTNLYIKNLDSDITEALLQEKFSSFG---KI 217
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDH 275
I L+ + ++GF+FV Y N D +R+ M N K ++ A K+ +
Sbjct: 218 ISLVISKDDNGLSKGFAFVNYEN---PDDARKAMEAMNGLKFGSKNLYVARAQKKAEREQ 274
Query: 276 ------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKR 322
Q LYVKNI D+ + +++++LF G +T V VM K +
Sbjct: 275 ILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRDDKGISK 334
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSP---GLVPTH 379
FGF+ ++ A KAV+ + L + +A+ + D+KT+ Y+P GL +
Sbjct: 335 GFGFVCFSNPEEANKAVRSFNGCMFHRKPLYIAIAQRKMDRKTQLNLHYAPQQTGLDGSS 394
Query: 380 LPHAGYGGFAGTPYGSVGTGFGVAAGFQQPM 410
P GGF Y SV + + QP+
Sbjct: 395 TPVIP-GGFPPYFYHSVASQMFQSGLLYQPL 424
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/284 (19%), Positives = 124/284 (43%), Gaps = 33/284 (11%)
Query: 97 AQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFR 156
A + A+P + +++G L + + L + + VR+ +D+ + +S + +V+F+
Sbjct: 5 ATVAAVP---ASLYVGDLHSEVVDHHLFEAFAEFKTMDSVRVCRDRVTMKSLCYGYVNFK 61
Query: 157 SKEFAKKAIDELHSKELKGKTIRCSLSE--------TKNRLFIGNVPKNWTEDEFRKVIE 208
S++ A +A+ ++ L GK IR S + +F+ N+ + + +
Sbjct: 62 SQQDAIRAMKLKNNSYLNGKVIRVMWSHPDPSARKSGRGNVFVKNLAGSIDNAGLHDLFQ 121
Query: 209 DVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP------ 262
G + + ++ +++G+ FV + + A+ NA KL+G+T
Sbjct: 122 KYGNILSSKVVM---SGDGKSKGYGFVQFESEESAN-------NAIEKLNGSTVGDKQIY 171
Query: 263 --TISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
+ P + A + LY+KN+ + + ++E F G++ +V+ +G
Sbjct: 172 VGKFVRKGDRILPGYDAKYTN---LYIKNLDSDITEALLQEKFSSFGKIISLVISKDDNG 228
Query: 321 -KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363
+ F F++Y A KA++ + + L V A+ + ++
Sbjct: 229 LSKGFAFVNYENPDDARKAMEAMNGLKFGSKNLYVARAQKKAER 272
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
L S +++ + D ++++LRDL G + V++M+D + G SKGF FV F + E A
Sbjct: 289 LKYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRD-DKGISKGFGFVCFSNPEEA 347
Query: 162 KKAIDELHSKELKGKTIRCSLSETK 186
KA+ + K + ++++ K
Sbjct: 348 NKAVRSFNGCMFHRKPLYIAIAQRK 372
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 125/266 (46%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L P G + +R+ +D + S G+A+V+F+ A+ A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAECALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GN+ KN E K + D I K
Sbjct: 71 TMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ ++G+ FV + A+ + + M N D + K + + A +
Sbjct: 131 VCDEKGSKGYGFVHFETQEAANRAIETM-NGMLLNDRKVFVGHFKSRKEREVEFGSKAMK 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+Y+KN ++ + EK+KE+F G V VM K R FGF++YA A KAV
Sbjct: 190 FTNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQKAVN 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ EI+G++L V A+ + +++ E
Sbjct: 250 EMNGKEINGKILYVGRAQKRLERQGE 275
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 135/295 (45%), Gaps = 37/295 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI + + + L D G++ +++ D++ SKG+ FV F ++E A +AI+ +
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDEKG--SKGYGFVHFETQEAANRAIETM 158
Query: 169 -------------HSKELKGKTIRCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
H K K + + K ++I N +++T+++ ++V G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREVEFGSKAMKFTNVYIKNFGEDFTDEKLKEVFSAFGRTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN-ANFK-LDGNTPTISWADPK-- 270
++ ++KD + R+RGF FV Y ++ A QK +N N K ++G + A +
Sbjct: 219 -SVRVMKDEKG--RSRGFGFVNYAHHEDA----QKAVNEMNGKEINGKILYVGRAQKRLE 271
Query: 271 STPDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
+ Q+K LYVKN+ D+ E++++ F +G +T + S
Sbjct: 272 RQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGSQ 331
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGL 375
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y L
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQRL 386
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 29/155 (18%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ V+I +D ++E L+++ G VR+MKD E G S+GF FV++ E A+KA++
Sbjct: 191 TNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKD-EKGRSRGFGFVNYAHHEDAQKAVN 249
Query: 167 ELHSKELKGKTIRCSLSETK------------------------NRLFIGNVPKNWTEDE 202
E++ KE+ GK + ++ + L++ N+ + ++
Sbjct: 250 EMNGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSIDDER 309
Query: 203 FRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
RK G TI K + S+++GF FV +
Sbjct: 310 LRKEFAPYG----TITSAKVMTDGSQSKGFGFVCF 340
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M D +SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMTD--GSQSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ +
Sbjct: 351 TEMNGRIVATKPLYVALAQRR 371
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 127/269 (47%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P+G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GN+ KN K + D I K
Sbjct: 71 TMNFEMIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEASIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS----AA 278
+ +RGF FV + + A ++ +N + N + KS + A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAAQHA----INTMNGMLLNDHKVFVGHFKSRREREVELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+ + + ++ELF + G++ V VM R FGF+++ A K
Sbjct: 187 AMEFTNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETHEEAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ G++L V A+ + +++ E
Sbjct: 247 AVVHMNGKEVSGRLLYVGRAQKRVERQNE 275
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/369 (22%), Positives = 149/369 (40%), Gaps = 66/369 (17%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ D+ S+GF FV F + E A+ AI+ +
Sbjct: 101 IFIKNLEASIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQHAINTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + +++ +++ N+ + E +++ G +
Sbjct: 159 NGMLLNDHKVFVGHFKSRREREVELGARAMEFTNIYVKNLQADVDEQGLQELFSQFGKML 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTP 273
++++++D SR GF FV N + +++ +++ N K + G + A +
Sbjct: 219 -SVKVMRDSSGHSR--GFGFV---NFETHEEAQKAVVHMNGKEVSGRLLYVGRAQKRVER 272
Query: 274 DHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
+ Q+K LYVKN+ D+ EK+++ F +G +T VM G
Sbjct: 273 QNELKRRFEQMKQDRMNRYQGVNLYVKNLDDSIDDEKLRKEFSPYGMITSAKVMTEGGHS 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
K FGF+ ++ A KAV + + + L V LA+ + ++K T Y L
Sbjct: 333 K-GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL----- 386
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQP 440
+ ++G+ F FQQP Y +P P GQ Y
Sbjct: 387 ----------STMRALGSPF--LGSFQQPTSYFLPAVPQ---------PPGQAAYY---G 422
Query: 441 GVQMPPPRP 449
MPPP+P
Sbjct: 423 SSSMPPPQP 431
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYVKNLDDSIDDEKLRKEFSPYGMITSAKVMT--EGGHSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGTKPLYVALAQRK 371
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 135/276 (48%), Gaps = 19/276 (6%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 174
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 175 CKVAQDEYGNSKGYGFV-HYETAEAATNAIKHVNGMLL---NEKKVFVGHHIAKKDRQSK 230
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP----PGKSGKRDFGFIHYA 330
++KA +YVKN+ + + E+ + LF+++GE+T + GKS R FGF++++
Sbjct: 231 FEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKS--RGFGFVNFS 288
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ +A AV+ +YE+ GQ L V A+ + +++ E
Sbjct: 289 DHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEE 324
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 12/118 (10%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + +D ++E+ R L E G++ L +D E+G+S+GF
Sbjct: 224 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFG 283
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIE 208
FV+F E A A++ L+ ELKG+ +L++G K+ E+E RK E
Sbjct: 284 FVNFSDHEAASAAVEALNEYELKGQ-----------KLYVGRAQKKHEREEELRKQYE 330
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 128/279 (45%), Gaps = 25/279 (8%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
PN + +++G L +E L +L +G V +R+ +D + S G+A+V++ S ++
Sbjct: 58 PNSASLYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGER 117
Query: 164 AIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A++EL+ +KG+ R S+ +FI N+ G +
Sbjct: 118 ALEELNYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDGAIDNKALHDTFAAFG-NIL 176
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
+ ++ D S+ GF ++Y A A K +N L+ + PK D
Sbjct: 177 SCKVAVDELGNSKGYGF---VHYETAEAASQAIKSVNGML-LNEKKVFVGHHIPKK--DR 230
Query: 276 SAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP----PGKSGKRDFGFI 327
+ ++KA +YVKNI + ++ +ELF+++GE+T + GKS R FGF+
Sbjct: 231 MSKFEEMKANFTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKS--RGFGFV 288
Query: 328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+Y A KAV + + GQ L V A+ + +++ E
Sbjct: 289 NYINHEDAYKAVDELNDSDFHGQKLYVGRAQKKHEREEE 327
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 120/272 (44%), Gaps = 40/272 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ D E G SKG+ FV + + E A +AI +
Sbjct: 151 VFIKNLDGAIDNKALHDTFAAFGNILSCKVAVD-ELGNSKGYGFVHYETAEAASQAIKSV 209
Query: 169 HSKELKGKTI----------RCS----LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + R S + +++ N+ T+DEFR++ E G +
Sbjct: 210 NGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIETEVTDDEFRELFEKYGE-I 268
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L D + ++RGF FV Y N+ A + ++ +++F G + A K +
Sbjct: 269 TSASLAHDNET-GKSRGFGFVNYINHEDAYKAVDELNDSDFH--GQKLYVGRAQKKHERE 325
Query: 275 HSA-----AASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
AA Q K+ LYVKN+ D E+++++F+ +G +T VM
Sbjct: 326 EELRKQYEAARQEKSAKYQGVNLYVKNLADEVDDEELRKIFEAYGAITSAKVM------- 378
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353
RD + AE + D EK ++DG+ E
Sbjct: 379 RDVTPLDKAETDAKENKTDDKEK-QVDGEPTE 409
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 127/299 (42%), Gaps = 63/299 (21%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + +++ + + ++++ R+L E G++ L D E+G+S+GF
Sbjct: 227 KKDRMSKFEEMKANFTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFG 286
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV++ + E A KA+DEL+ + G+ + ++ K+
Sbjct: 287 FVNYINHEDAYKAVDELNDSDFHGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYQGV 346
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
L++ N+ ++E RK+ E G + + ++++D V + A D
Sbjct: 347 NLYVKNLADEVDDEELRKIFEAYG-AITSAKVMRD------------VTPLDKAETDAKE 393
Query: 248 QKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
K + ++DG + T D + + K + T + K L
Sbjct: 394 NKTDDKEKQVDG----------EPTEDKNGEEQEDMEELEKKMDTVTIGGEKKVL----- 438
Query: 308 EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
GKS + FGF+ ++ A KAV + + I G+ L V LA+ + +KT+
Sbjct: 439 ---------GKS--KGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKTQ 486
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 128/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAANKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + E ++ELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVE 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E+ G+ + V A+ + +++ E
Sbjct: 250 EMNGKEMSGKSIFVGRAQKKVERQAE 275
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 133/291 (45%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ R++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++D S+ GF FV Y + A+ + ++M ++ G + + A K
Sbjct: 219 -SVKVMRDCSGKSK--GFGFVSYEKHEDANKAVEEMNGK--EMSGKSIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+LR+L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK+I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 128/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAANKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + E ++ELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVE 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E+ G+ + V A+ + +++ E
Sbjct: 250 EMNGKEMSGKSIFVGRAQKKVERQAE 275
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ R++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++D +++GF FV Y + A+ + ++M N ++ G + + A K
Sbjct: 219 -SVKVMRDCSG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EMSGKSIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+LR+L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK+I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 130/272 (47%), Gaps = 19/272 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G LP D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG---NTPTISWADPKSTPDHS--- 276
+ +RGF FV + + A NA ++G N + KS +
Sbjct: 131 VCDEHGSRGFGFVHFETHEAAQ-------NAISTMNGMLLNDRKVFVGHFKSRREREVEL 183
Query: 277 -AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSS 334
A A + +YVKN+ + +++++LF + G++ V VM R FGF+++ +
Sbjct: 184 GARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEE 243
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A KAV + E+ G++L V A+ + +++ E
Sbjct: 244 AQKAVVNMNGREVSGRLLYVGRAQKRVERQNE 275
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 127/291 (43%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ +++ D+ S+GF FV F + E A+ AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQNAISTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+ + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKML 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTP 273
++++++D + +RGF FV + + + +++ ++N N + + G + A +
Sbjct: 219 -SVKVMRD--DSGHSRGFGFVNFEKH---EEAQKAVVNMNGREVSGRLLYVGRAQKRVER 272
Query: 274 DHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
+ Q+K LYVKN+ D+ EK+++ F +G +T VM G
Sbjct: 273 QNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
K FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 K-GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ +L A + +++ L D E+ L+DL G + V++M+D +SG S+G
Sbjct: 174 KSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ +E+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVNMNGREVSGRLL 261
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGTKPLYVALAQRK 371
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 130/275 (47%), Gaps = 16/275 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 64 PQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSVADGE 123
Query: 163 KAIDELHSKELKGKTIRCSLSETKNRLFI---GNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KGK R S+ L GN+ KN K + D I
Sbjct: 124 KALEELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNIL 183
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHS 276
K + + N +G+ FV Y + A Q + + N L+ + + PK D
Sbjct: 184 SCKVATDENGNSKGYGFVHYETDEAAA---QAIKHVNGMLLNEKKVYVGYHIPKK--DRQ 238
Query: 277 AAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
+ ++KA +Y+KNI + E+ +E F + GE+T + GK R FGF++Y+
Sbjct: 239 SKFEEMKANYTNVYIKNINLEVTEEEFREFFSKWGEITSSTLARDAEGKPRGFGFVNYST 298
Query: 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+SA K V++ E GQ L V A+ + +++ E
Sbjct: 299 HASAAKCVEEMNGKEWRGQELYVGRAQKKHEREEE 333
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 127/327 (38%), Gaps = 75/327 (22%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ D E+G SKG+ FV + + E A +AI +
Sbjct: 158 IFIKNLDAAIDNKALHDTFAAFGNILSCKVATD-ENGNSKGYGFVHYETDEAAAQAIKHV 216
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K ++I N+ TE+EFR+ G +
Sbjct: 217 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANYTNVYIKNINLEVTEEEFREFFSKWGE-I 275
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L +D + + RGF FV Y +A A ++M ++ G + A K +
Sbjct: 276 TSSTLARDAE--GKPRGFGFVNYSTHASAAKCVEEMNGKEWR--GQELYVGRAQKKHERE 331
Query: 275 HSAAASQVKA------------LYVKNIPDNTSTEKIKELFQRHGEVT------------ 310
S A LY+KN+ D EK++ +F G +T
Sbjct: 332 EELRKSYEAARLEKQNKYQGVNLYIKNLSDEVDDEKLRAMFAEFGPITSAKVMRDTPPEP 391
Query: 311 ------------------------------KVVMPPGKSGK-RDFGFIHYAERSSALKAV 339
+V P K GK + FGF+ +A A KAV
Sbjct: 392 AKDEKNKENNKESEKEGEKKEGEGEGDKKPEVKKPERKLGKSKGFGFVCFANPDDATKAV 451
Query: 340 KDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ + +DG+ L V LA+ + +K++
Sbjct: 452 AEMNQRMVDGKPLYVALAQRKEVRKSQ 478
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 128/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAANKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN + E ++ELF + G+ V + SGK + FGF+ Y + A KAV+
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVE 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E+ G+ + V A+ + +++ E
Sbjct: 250 EMNGKEMSGKSIFVGRAQKKVERQAE 275
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 134/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ R++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++D S+ GF FV Y + A+ + ++M N ++ G + + A K
Sbjct: 219 -SVKVMRDCSGKSK--GFGFVSYEKHEDANKAVEEM-NGK-EMSGKSIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E+LR+L G V++M+D SG+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK+I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 125/266 (46%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GNV ED K + D I K
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ +RGF FV + + A + M N D + + + A A+
Sbjct: 131 VCDDHGSRGFGFVHFETHEAAQQAISTM-NGMLLNDRKVFVGHFKSRREREAELGARATA 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+YVKN+P + +++LF + G++ V VM R FGF+++ + A KAV
Sbjct: 190 FTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVM 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
D ++ G++L V A+ + +++ E
Sbjct: 250 DMNGMQVSGRLLYVGRAQKRGERQNE 275
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 126/291 (43%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ +++ D S+GF FV F + E A++AI +
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQQAISTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARATAFTNIYVKNLPGHVDERGLQDLFSQFGKML 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPK--- 270
++++++D + +RGF FV + + + +++ +++ N ++ G + A +
Sbjct: 219 -SVKVMRD--DSGHSRGFGFVNFEKH---EEAQKAVMDMNGMQVSGRLLYVGRAQKRGER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
T Q LYVKN+ D+ EK+++ F +G +T VM G
Sbjct: 273 QNELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
K FGF+ ++ A KAV + I + L V LA+ + ++K T Y
Sbjct: 333 K-GFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALAQRKEERKAILTNQY 382
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP E L+DL G + V++M+D +SG S+G
Sbjct: 174 KSRREREAELGARATAFTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRD-DSGHSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ +++ ++ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVMDMNGMQVSGRLL 261
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIIGTKPLYVALAQRK 371
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 134/285 (47%), Gaps = 34/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K +++L D G + ++ D E+G SKG+ FV F ++E AK+AI ++
Sbjct: 92 IFIKNLAKTIEQKELYDTFSLFGRILSCKIAMD-ENGNSKGYGFVHFENEECAKRAIQKV 150
Query: 169 HSKELKGKTIRC------SLSETKNR------LFIGNVPKNWTEDEFRKVIEDVGPGVET 216
++ + GK + S +++NR +++ N P +++ +++ + G +++
Sbjct: 151 NNMSICGKVVYVGNFIPRSDRKSQNRKQKFNNIYVKNFPPETDDEKLKEMFTEFGE-IKS 209
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK------ 270
++KD + S +GF FV Y N A+ + M ++ G + S A K
Sbjct: 210 ACVMKDSEGKS--KGFGFVCYLNPEHAEAAVAAMHGK--EIGGRSLYASRAQRKEERQEE 265
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
S S V LYVKN+ D E++KE+F ++G ++ VM +
Sbjct: 266 LKLRLEKQKAERRSKYVSNVN-LYVKNLDDEIDDERLKEIFSKYGPISSAKVMTDSNNRS 324
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ + A KAV + + L V +A+ + D++ E
Sbjct: 325 KGFGFVCFTNPEQATKAVTEANGRVEYSKPLYVAIAQRKEDRRAE 369
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 89/180 (49%), Gaps = 11/180 (6%)
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
L++G++ + +D+ R ++GP V + +D + ++ G+ +V + + A+ + +
Sbjct: 4 LYVGDLHPDINDDQLRMKFSEIGP-VAVAHVCRDVTS-RKSLGYGYVNFEDPKDAERALE 61
Query: 249 KMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
+M N+++ P I W S D S S + +++KN+ +++ + F G
Sbjct: 62 QM---NYEVVMGRPIRIMW----SQRDPSLRKSGLGNIFIKNLAKTIEQKELYDTFSLFG 114
Query: 308 EVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ + ++G + +GF+H+ A +A++ I G+V+ V P++D+K++
Sbjct: 115 RILSCKIAMDENGNSKGYGFVHFENEECAKRAIQKVNNMSICGKVVYVGNFIPRSDRKSQ 174
>gi|215712317|dbj|BAG94444.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 436
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 92/182 (50%), Gaps = 24/182 (13%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
++F+GGLP+D +E D G++ + +M+DK + + +GF F+++ + + +D+
Sbjct: 24 KIFVGGLPRDTTEADFVKHFGQYGEIVDSVIMRDKHTSQPRGFGFITYSNPAVVDRVMDD 83
Query: 168 LHSKELKGKTIRCSLSETKN----------RLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
+H E GK + + K+ ++F+G +P+ TED+F+ + GP V+
Sbjct: 84 IH--EFNGKQVEIKRTIPKDSVQSKDFKTKKIFVGGLPQALTEDDFKHFFQKYGPVVDH- 140
Query: 218 ELIKDPQNPSRNRGFSFVLY----------YNNACADYSRQKMLNANFKLDGNTPTISWA 267
++++D Q R+RGF F+++ N D + K+++AN L A
Sbjct: 141 QIMRDHQT-KRSRGFGFIVFSSDQVVDDLLANGNMIDLAGAKLIDANGLLCSLHRAAGGA 199
Query: 268 DP 269
DP
Sbjct: 200 DP 201
>gi|195117924|ref|XP_002003495.1| GI17944 [Drosophila mojavensis]
gi|193914070|gb|EDW12937.1| GI17944 [Drosophila mojavensis]
Length = 851
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 21/206 (10%)
Query: 72 DDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIG 131
DDD+ + + + + GE E D P+ ++F+G +PK E LR++ E G
Sbjct: 365 DDDSCYRLDPDTAVVTYGEKEPD---------PDNIKMFVGQVPKSMDEAQLREMFEEYG 415
Query: 132 DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGKT--IRCSLSETKNR 188
V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I+ ++++NR
Sbjct: 416 PVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLSGMYHPIQMKPADSENR 475
Query: 189 ----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
LFIG + K E++ RK+ E G +E +++D QN +++G +FV + A
Sbjct: 476 NERKLFIGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAFVTFATKHAAI 532
Query: 245 YSRQKMLNANFKLDGNTP--TISWAD 268
+ + L+ N ++G T + +AD
Sbjct: 533 SAIKVTLSQNKIMEGCTSPLVVKFAD 558
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + E A+
Sbjct: 763 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPESAQM 822
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L + K+
Sbjct: 823 AIKSMNGFQVGTKRLKVQLKKPKD 846
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 132/266 (49%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ +K+K++F ++G + + ++GK R FGF+ + A +AV
Sbjct: 190 FTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+++ V A+ + +++TE
Sbjct: 250 EMNGKEMNGKLIYVGRAQKKVERQTE 275
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D ++ L+D+ G+ +R+M D E+G+S+G
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A++A+DE++ KE+ GK I ++ K
Sbjct: 233 FGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K + R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMDGGRSKGFGFVCF 340
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 133/291 (45%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ +D+ + + G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAM 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
+I ++ D SR GF FV + + A + +M N +++G + A K
Sbjct: 219 -SIRVMTDENGKSR--GFGFVSFERHEDAQRAVDEM-NGK-EMNGKLIYVGRAQKKVERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 274 TELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + +++ T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M D G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMD--GGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>gi|351709863|gb|EHB12782.1| Heterogeneous nuclear ribonucleoprotein A3 [Heterocephalus glaber]
Length = 392
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 123/256 (48%), Gaps = 28/256 (10%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P ++FIGGL + +++ LR+ E G + + +M+D ++ S+GF FV++
Sbjct: 31 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFDFVTY------- 83
Query: 163 KAIDELHS-KELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
++E H KE E +LFIG + T+D R+ E G + + +++
Sbjct: 84 SCVEEGHDPKE----------PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCV-VMR 132
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
DPQ R+RGF FV Y +C + M K+DG A + A
Sbjct: 133 DPQT-KRSRGFGFVTY---SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLT 188
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG-KRDFGFIHYAERSSALKAV 339
VK ++V I ++T +++ F+++G++ + VM +SG KR F F+ + + + K V
Sbjct: 189 VKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 248
Query: 340 KDTEKYE-IDGQVLEV 354
+KY I+G EV
Sbjct: 249 --VQKYHTINGHNCEV 262
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 146/332 (43%), Gaps = 39/332 (11%)
Query: 64 QSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDL 123
Q A+A R D E + KP + ++D + + +F+ L + + L
Sbjct: 59 QVADAERALDSMNFTEIKGKP-CRIMWSQRDPSMRRSGV----GNIFVKNLHEGIDNKQL 113
Query: 124 RDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183
D G++ +++ DK +G SKG+ +V + + E A AI++L + GK ++ +
Sbjct: 114 YDTFSLFGNILSCKVVTDKATGLSKGYGYVHYETNEAAASAIEKLDGMLIDGKEVQVGVF 173
Query: 184 ETK-NR--------LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ NR +FI N+P WTED+ R+ E G V P+ + GF F
Sbjct: 174 MRRDNRPGQADWTNVFIKNIPFEWTEDKLREEFEGFGEVVSA-----KPKEVQGSLGFGF 228
Query: 235 VLYYNNACADYSRQKMLNANFKL--DGNTPT----ISWADPKSTPDHSAAAS-------- 280
V + + A + ++M + F + DG T + A K+ + A
Sbjct: 229 VNFATHEAAAAAVKEMNDKEFTVTEDGEEVTKVLFVGRAQKKAERERELRAKYEAEKIDR 288
Query: 281 ----QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG-KRDFGFIHYAERSS 334
Q LYVKN+ D + + +++ F G +T VM K+G R FGF+ Y+
Sbjct: 289 IAKFQGVNLYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPED 348
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A +AV + I G+ + V LA+ + ++ +
Sbjct: 349 ATRAVNEMNGKIILGKPIFVALAQRRDVRRAQ 380
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 129/271 (47%), Gaps = 18/271 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ ++IG L + +E L ++ +G V +R+ +D + S G+A+V++ A++A+D
Sbjct: 9 ASLYIGDLLPEVNEGFLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQVADAERALD 68
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGP---GVETIEL 219
++ E+KGK R S+ + R +GN+ KN E K + D + + ++
Sbjct: 69 SMNFTEIKGKPCRIMWSQRDPSMRRSGVGNIFVKNLHEGIDNKQLYDTFSLFGNILSCKV 128
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ D + ++G+ +V Y N A + +K+ +DG + + D+
Sbjct: 129 VTD-KATGLSKGYGYVHYETNEAAASAIEKL--DGMLIDGKEVQVGVFMRR---DNRPGQ 182
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
+ +++KNIP + +K++E F+ GEV P G FGF+++A +A AV
Sbjct: 183 ADWTNVFIKNIPFEWTEDKLREEFEGFGEVVS-AKPKEVQGSLGFGFVNFATHEAAAAAV 241
Query: 340 KDTEKYEI----DGQVLEVVLAKPQTDKKTE 366
K+ E DG+ + VL + KK E
Sbjct: 242 KEMNDKEFTVTEDGEEVTKVLFVGRAQKKAE 272
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 132/274 (48%), Gaps = 15/274 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 51 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 111 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 170
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 171 CKVAQDEFGNSKGYGFV-HYETAEAAQNAIKHVNGMLL---NDKKVFVGHHIAKKDRQSK 226
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGK-RDFGFIHYAER 332
++KA +YVKNI +T+ E+ +ELF++ GE+T + +SGK R FGF+++
Sbjct: 227 FEEMKANFTNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSH 286
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV + + + Q L V A+ + +++ E
Sbjct: 287 ESAAAAVDNLNEKDFKSQKLYVGRAQKKHEREEE 320
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 96/386 (24%), Positives = 163/386 (42%), Gaps = 62/386 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + +D ++E+ R+L E G++ L +D ESG+S+GF
Sbjct: 220 KKDRQSKFEEMKANFTNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFG 279
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIEDV 210
FV+F S E A A+D L+ K+ K + +L++G K+ E+E RK E
Sbjct: 280 FVNFTSHESAAAAVDNLNEKDFKSQ-----------KLYVGRAQKKHEREEELRKQYE-- 326
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
IE S+ +G + LY N D +K+ + T D
Sbjct: 327 ---AARIE------KASKYQGVN--LYIKNLSDDIDDEKLRDLFSGYGTITSAKVMRDNL 375
Query: 271 STPDHSAAASQVKALYVKNIP---------DNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
+ S + + K+ +N P + T+ KE + K ++ GKS
Sbjct: 376 AAESSSDSEKEAKSEGKENEPPEESKDEAAEKAETKDTKEAKTESKKADKKLL--GKS-- 431
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ FGF+ ++ A KAV + + ++G+ L V LA+ + ++++
Sbjct: 432 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ--------------L 477
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQ-PMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQP 440
A G+ F Q P+ YG G LP+ + G QQP
Sbjct: 478 EASIQARNTIRQQQAAAAAGMPQPFMQPPVFYGPGQQ--------NFLPNQRGGMPFQQP 529
Query: 441 GVQMPP-PRPRRVDRSNGPGGRGGRG 465
G+ +P P R S PG +GGRG
Sbjct: 530 GMVIPQMPGGRHGQFSGFPGQQGGRG 555
>gi|224060419|ref|XP_002300190.1| predicted protein [Populus trichocarpa]
gi|222847448|gb|EEE84995.1| predicted protein [Populus trichocarpa]
Length = 689
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 129/278 (46%), Gaps = 14/278 (5%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
+VF+GGL K A EEDLR + + +V +VRL D ES K AF++F + E A++AI E
Sbjct: 72 KVFVGGLDKYAKEEDLRKVFGGVEEVTKVRLSWDSES--KKRVAFLTFATVELARRAICE 129
Query: 168 LHSKELKGKTIRCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDP 223
+ + GK RC ++ ++ L++ N+ K WT+D+ + + G E + L
Sbjct: 130 ISDPVINGK--RCWTAQIQDGSKTLYVPNICKEWTKDDLEDKLAEYGVKNYEILTLNPAR 187
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
+N +NRG++ + + + A + + + N N + K + S VK
Sbjct: 188 ENKEKNRGYAHLDFRSGKDASEALELLKKENVSFGQNRAAKADFSRKYASGNDEIMSHVK 247
Query: 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG--KSGKRDFGFIHYAERSSALKAVKD 341
+Y+ IP E +K+ + G + KV + + + ++ ++ + +A V
Sbjct: 248 RVYLDGIPRAWREEHVKKHLKEFGRIVKVELARHIPSAIRTNYCYVTFETHEAAATCVNG 307
Query: 342 TE---KYEIDGQVLEVV-LAKPQTDKKTEGTFPYSPGL 375
Y D +V LAKP+ +EGT S +
Sbjct: 308 VNVDGLYFRDKRVNAWADLAKPRVRIPSEGTAQASSSV 345
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 144/352 (40%), Gaps = 52/352 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G + ++ D E G +KG+ FV F S E A AI+ +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 169 HSKELKGKTIRC--------------SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + +L ++I N+ TE EF + G +
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGE-I 287
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
++ L+KD QN + RGF FV Y N+ CA + ++ + +K G + A K +
Sbjct: 288 TSLSLVKD-QN-DKPRGFGFVNYANHECAQKAVDELNDKEYK--GKKLYVGRAQKKHERE 343
Query: 275 HSAAA--SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
Q+K L++KN+ D E++K F G +T + + GK
Sbjct: 344 EELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKS 403
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSP-GLVPTHL 380
+ FGF+ Y A KAV + + + G+ L V LA+ + ++++
Sbjct: 404 KGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQ 463
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRG--PMPS-----GMHMVP 425
A G YG+ G P+IYG G P+P+ GM MVP
Sbjct: 464 QVAAAAGIPAVQYGATG-----------PLIYGPGGYPIPAAVNGRGMPMVP 504
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 131/273 (47%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P + +++G L +E L +L IG V +R+ +D + S G+A+V+F + E +K
Sbjct: 77 PTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 136
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+DEL+ +KG+ R S+ + ++ GNV KN K + D I
Sbjct: 137 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILS 196
Query: 220 IKDPQNPSRN-RGFSFVLY----YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
K + N +G+ FV + NA ++ +LN G+ +S + +S +
Sbjct: 197 CKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH--HVSRRERQSKVE 254
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
A + +Y+KN+ + ++ +LF + GE+T + + ++ K R FGF++YA
Sbjct: 255 --ALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHE 312
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A KAV + E G+ L V A+ + +++ E
Sbjct: 313 CAQKAVDELNDKEYKGKKLYVGRAQKKHEREEE 345
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L + +E L+ G + ++M D E G+SKGF FV + + E A KA+
Sbjct: 363 GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + L GK + +L++ K
Sbjct: 422 TEMNQRMLAGKPLYVALAQRK 442
>gi|185135189|ref|NP_001118133.1| dead-end [Oncorhynchus mykiss]
gi|116089887|gb|ABJ55663.1| dead-end [Oncorhynchus mykiss]
Length = 364
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 91/179 (50%), Gaps = 9/179 (5%)
Query: 100 LALPPN-GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK 158
L PP G EVFI +P+D E+ L L +G ++E RLM + SG+++GFA+ + S
Sbjct: 45 LGAPPGPGCEVFISQIPRDVFEDQLIPLFRAVGPLWEFRLMMNF-SGQNRGFAYAKYDSP 103
Query: 159 EFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
A AI LH + L+ G + S K +L +G +P + ++ +V+ D GVE +
Sbjct: 104 ASAAAAIRSLHGRALESGARLSVRRSTEKRQLCLGELPTSTRREQLLQVLLDFSEGVEGV 163
Query: 218 ELIKDPQNPSRNRGFS-FVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
L P R +G S V+Y ++ A +++ ++ A K G T+ W S P H
Sbjct: 164 SLRAGP----REQGLSAVVVYASHHAASMAKKVLIEAFKKRFGLAITLKWQS-SSRPKH 217
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 144/308 (46%), Gaps = 28/308 (9%)
Query: 76 PHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE 135
P VE + A+ E ++ +L + N + +++G L +E L ++ PIG V
Sbjct: 30 PAVESDAPAGAAPAEPSSEEQGELGGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSS 89
Query: 136 VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET--------KN 187
+R+ +D S +S G+A+V++ E +KAIDEL+ ++ + R S+
Sbjct: 90 IRVCRDAVSKKSLGYAYVNYHKFEDGEKAIDELNYSLIENRPCRIMWSQRDPSARRSGDG 149
Query: 188 RLFIGN----VPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
+FI N + D F + V T +L +++ F FV Y A
Sbjct: 150 NIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDDL-------GQSKCFGFVHY---ETA 199
Query: 244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEKI 299
+ + + N N L N + S D + ++KA +YVKNI S ++
Sbjct: 200 EAAEAAIENVNGMLL-NDREVYVGKHVSKKDRESKFEEMKANYTNIYVKNIDLEFSEKEF 258
Query: 300 KELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
++LF +G++T + + + GK + FGF++Y E SA++AV+ EI+GQ + V A+
Sbjct: 259 EDLFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVEAVEALNDKEINGQKIYVGRAQ 318
Query: 359 PQTDKKTE 366
+ ++ E
Sbjct: 319 KKRERTEE 326
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 90/385 (23%), Positives = 156/385 (40%), Gaps = 56/385 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D + G+SK F FV + + E A+ AI+ +
Sbjct: 151 IFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-DLGQSKCFGFVHYETAEAAEAAIENV 209
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK + E+K +++ N+ ++E EF + G +
Sbjct: 210 NGMLLNDREVYVGKHVSKKDRESKFEEMKANYTNIYVKNIDLEFSEKEFEDLFAPYGK-I 268
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD +++GF FV Y + A + + + + +++G + A K
Sbjct: 269 TSIYLEKD--QDGKSKGFGFVNYEEHKSAVEAVEALNDK--EINGQKIYVGRAQKKRERT 324
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ + Q L+VKN+ D +EK++E F+ G +T + +GK
Sbjct: 325 EELKKQYEAIRLEKLSKYQGVNLFVKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKS 384
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
R FGF+ ++ A KA+ + + ++G+ L V LA+ + ++++
Sbjct: 385 RGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQN 444
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPM--PSGMHMVPMVLPDGQIGYVLQQ 439
A GF G F PM YG+ P G P P+ Q+ Q
Sbjct: 445 AAAAAGFPGQ--------------FMPPMYYGQQGFFPPGGRGNAPFPGPNPQMMMRRGQ 490
Query: 440 PGVQMPPPRPRRVDRSNGPGGRGGR 464
PG P PR PGG G+
Sbjct: 491 PGQPFPEQWPR-------PGGPNGQ 508
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L E L + +P G + ++M D ++G+S+GF FV F + E A KAI
Sbjct: 344 GVNLFVKNLDDQIDSEKLEEEFKPFGTITSAKVMVD-DAGKSRGFGFVCFSTPEEATKAI 402
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + + GK + +L++ K+
Sbjct: 403 TEMNQRMVNGKPLYVALAQRKD 424
>gi|449668124|ref|XP_002167931.2| PREDICTED: CUGBP Elav-like family member 2-like [Hydra
magnipapillata]
Length = 511
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 92/169 (54%), Gaps = 11/169 (6%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P ++FIG +P++ +E++LR + EP G++ E+ ++ DK +G+ KG AF+ F KE A +
Sbjct: 18 PEACKLFIGQVPRNWTEKELRPILEPYGEIHELSILYDKYTGQHKGCAFLVFYEKEAANR 77
Query: 164 AIDELHSKE-LKGKTIRCSL----SETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
+ELH K L G + + SE K +LFIG + K ED+ R + G +E
Sbjct: 78 CQNELHEKRTLPGSVNKMQVKPAESEIKTEDRKLFIGMLSKKLNEDDLRIMFSPYGT-IE 136
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264
+ ++++P S +G +F+ Y A + + M N+ + ++P +
Sbjct: 137 ELTILRNPDGGS--KGCAFIKYSTRLQAQNAIKAMHNSQTMENCSSPVV 183
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+G+ +FI LP++ ++ DL P G+V ++ DK + SK F FVS+ + A
Sbjct: 422 PDGANLFIYHLPQEFTDADLMQTFMPFGNVVSAKVFIDKPTLLSKCFGFVSYDNSLSATN 481
Query: 164 AIDELHSKELKGKTIRCSLSETKNR 188
AI+ +H + K ++ L K++
Sbjct: 482 AINAMHGFSIGSKRLKVQLKRPKDK 506
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 129/269 (47%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH----SAA 278
+ +RGF FV + + A +Q + N L N + KS + A
Sbjct: 131 VCDDHGSRGFGFVHFETHEAA---QQAITTMNGMLL-NDRKVFVGHFKSRREREVELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+ + + +++LF R G++ V VM R FGF+++ + A K
Sbjct: 187 AMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV D E+ G++L V A+ + ++++E
Sbjct: 247 AVMDMNGKEVSGRLLYVGRAQKRVERQSE 275
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ +L A + +++ L D E+ L+DL G + V++M+D +SG S+G
Sbjct: 174 KSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F+ E A+KA+ +++ KE+ G+ +
Sbjct: 233 FGFVNFQKHEEAQKAVMDMNGKEVSGRLL 261
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 127/291 (43%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ +++ D S+GF FV F + E A++AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQQAITTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+ + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKML 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--S 271
++++++D + +RGF FV + + + +++ +++ N K + G + A +
Sbjct: 219 -SVKVMRD--DSGHSRGFGFVNFQKH---EEAQKAVMDMNGKEVSGRLLYVGRAQKRVER 272
Query: 272 TPDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
+ Q+K LYVKN+ D+ EK+++ F +G +T VM G
Sbjct: 273 QSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
K FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 K-GFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQRKEERKAILTNQY 382
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + L K + +L++ K
Sbjct: 350 VTEMNGRILGTKPLYVALAQRK 371
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 135/284 (47%), Gaps = 29/284 (10%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P + +++G L + +E L +L IG V +R+ +D + S G+A+V++ S
Sbjct: 53 AHPQASASLYVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSTAD 112
Query: 161 AKKAIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGP 212
+KA++EL+ +K + R S+ + +FI KN K + D
Sbjct: 113 GEKALEELNYTLIKNRPCRIMWSQRDPALRKTGQGNIFI----KNLDAAIDNKALHDTFA 168
Query: 213 GVETIELIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPK 270
I K Q+ N +G+ FV Y + A +Q + + N L+ + PK
Sbjct: 169 AFGNILSCKVAQDEHGNSKGYGFVHYETDEAA---QQAIKHVNGMLLNEKKVYVGHHIPK 225
Query: 271 STPDHSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP----PGKSGKR 322
D + ++KA +Y+KN+ + + ++ ++LF+++G VT + GKS R
Sbjct: 226 K--DRQSKFEEMKANYTNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKS--R 281
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
FGFI++ SA KAV++ EI GQ L V A+ + +++ E
Sbjct: 282 GFGFINFTTHESAAKAVEELNSREIHGQELYVGRAQKKHEREEE 325
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 106/228 (46%), Gaps = 31/228 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ +D E G SKG+ FV + + E A++AI +
Sbjct: 149 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAAQQAIKHV 207
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K ++I N+ + T+DEFRK+ E G V
Sbjct: 208 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANYTNIYIKNLHADVTDDEFRKLFEQYG-AV 266
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ + +D Q ++RGF F+ + + A + ++ LN+ ++ G + A K +
Sbjct: 267 TSSTIARD-QETGKSRGFGFINFTTHESAAKAVEE-LNSR-EIHGQELYVGRAQKKHERE 323
Query: 275 HSA-----AASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVT 310
AA Q KA LY+KN+ D EK++ELF +G +T
Sbjct: 324 EELRKSYEAARQEKASKYVGVNLYIKNLDDEVDDEKLRELFAPYGPIT 371
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 150/325 (46%), Gaps = 23/325 (7%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGL 114
S A A++ +S E N D P EE + GE E+ A + + +++G L
Sbjct: 2 SAADANQVQESLE-KLNLDSAPVASTEETEQTASGETEE--AADSAQVSDTSASLYVGEL 58
Query: 115 PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174
+E L ++ PIG V +R+ +D + +S G+A+V+F E +KAI++L+ ++
Sbjct: 59 NPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIE 118
Query: 175 GKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
G+ R S+ +FI N+ G + + ++ D
Sbjct: 119 GRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGK-ILSCKVATDDMGI 177
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA-- 284
S+ GF ++Y A A + + +N + N + S D + ++KA
Sbjct: 178 SKCFGF---VHYETAEAAEAAIENVNG---MLLNDREVYVGKHISKKDRESKFEEMKANF 231
Query: 285 --LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKD 341
+Y KNI + S E+ K+LF+ +G++T + + GK + FGF+++ SA+KAV +
Sbjct: 232 TNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDE 291
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+GQ + V A+ + ++ E
Sbjct: 292 LNDKEINGQKIYVGRAQKKRERLEE 316
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 90/370 (24%), Positives = 161/370 (43%), Gaps = 54/370 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D + G SK F FV + + E A+ AI+ +
Sbjct: 141 IFIKNLHPAIDNKALHDTFTAFGKILSCKVATD-DMGISKCFGFVHYETAEAAEAAIENV 199
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK I E+K ++ N+ +++E+EF+K+ E G +
Sbjct: 200 NGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGK-I 258
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD + S+ GF FV + N+ A + ++ + +++G + A K
Sbjct: 259 TSIYLEKDHEGKSK--GFGFVNFENHESAVKAVDELNDK--EINGQKIYVGRAQKKRERL 314
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+T + Q L++KN+ D +EK++E F+ G +T + ++GK
Sbjct: 315 EELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKS 374
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ FGF+ ++ A KA+ + + I G+ L V LA+ + ++++ L
Sbjct: 375 KGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQ-------------LE 421
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPM---PSGMHMVPMVLPDGQIGYVLQ 438
+ TG G+ F PM YG+ P P+G P P+ Q +
Sbjct: 422 QQIQARNQMRMQNAAATG-GIPGQFIPPMFYGQQPGFFPPNGRGNGPFPGPNPQ----MM 476
Query: 439 QPGVQMPPPR 448
P Q+PPP+
Sbjct: 477 MPRGQIPPPQ 486
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L E L + +P G + R+M D E+G+SKGF FV F S E A KAI
Sbjct: 334 GVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVD-ETGKSKGFGFVCFSSPEEATKAI 392
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + + GK + +L++ K+
Sbjct: 393 TEMNQRMIYGKPLYVALAQRKD 414
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 126/270 (46%), Gaps = 14/270 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +E L ++ IG V +R+ +D + S G+A+V++ + ++A++
Sbjct: 56 ASLYVGELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 115
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
+L+ +K + R S+ + +FI N+ + G V + +
Sbjct: 116 QLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDHKALHDTFAAFG-NVLSCK 174
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH-SA 277
+ D R+RGF FV +Y+ A A + K +N D + K H
Sbjct: 175 VATDENG--RSRGFGFV-HYDTAEAADTAIKAVNGMLLNDKKVFVGHYISKKERQAHIDE 231
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
SQ LYVKN+ + ++ ++F + GEVT V+ + GK + FGF+++ + SA
Sbjct: 232 QKSQFTNLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEGKSKGFGFVNFKDHESAQ 291
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E++G+ L V A+ + +++ E
Sbjct: 292 AAVDALHDTELNGKKLFVTRAQKKAEREEE 321
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 117/273 (42%), Gaps = 33/273 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + + L D G+V ++ D E+G S+GF FV + + E A AI +
Sbjct: 146 IFIKNLDEQIDHKALHDTFAAFGNVLSCKVATD-ENGRSRGFGFVHYDTAEAADTAIKAV 204
Query: 169 HSKELKGKTI-----------RCSLSETKNR---LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + + E K++ L++ N+ T+DEF + G
Sbjct: 205 NGMLLNDKKVFVGHYISKKERQAHIDEQKSQFTNLYVKNLDTEVTDDEFNDMFAKFG--- 261
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
E + +++GF FV + ++ A + + + +L+G ++ A K+ +
Sbjct: 262 EVTSAVVQKDEEGKSKGFGFVNFKDHESAQAAVDALHDT--ELNGKKLFVTRAQKKAERE 319
Query: 275 HSAAASQVKA------------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
S +A LY+KN+ D+ +K++ F+ G +T +M K
Sbjct: 320 EELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDKLRAEFEPFGTITSCKIMRDEKGTS 379
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354
+ FGF+ Y+ A KAV + + + L V
Sbjct: 380 KGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYV 412
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 31/180 (17%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++ L + ++++ D+ G+V + KD+E G+SKGF FV+F+ E A+ A+D
Sbjct: 237 TNLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEE-GKSKGFGFVNFKDHESAQAAVD 295
Query: 167 ELHSKELKGKTIRCSLSETK------------------------NRLFIGNVPKNWTEDE 202
LH EL GK + + ++ K L+I N+ + +D+
Sbjct: 296 ALHDTELNGKKLFVTRAQKKAEREEELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDK 355
Query: 203 FRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262
R E G + + ++++D + S +GF FV Y + A + +M N K+ G+ P
Sbjct: 356 LRAEFEPFG-TITSCKIMRDEKGTS--KGFGFVCYSSPEEATKAVAEM---NNKMLGSKP 409
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G+ ++I L D ++ LR EP G + ++M+D E G SKGF FV + S E A KA+
Sbjct: 339 GANLYIKNLEDDMDDDKLRAEFEPFGTITSCKIMRD-EKGTSKGFGFVCYSSPEEATKAV 397
Query: 166 DELHSKELKGKTIRCSLSETK 186
E+++K L K + S ++ +
Sbjct: 398 AEMNNKMLGSKPLYVSPAQRR 418
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 130/292 (44%), Gaps = 40/292 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D ESG SKG+ FV F ++E A K+ID +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 169 HSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSR 228
+ L GK N ++ T+D+ + + E G +IKD +
Sbjct: 160 NGMLLNGKK---------------NFGEDMTDDKLKDMFEKYGTITSHKVMIKDD---GK 201
Query: 229 NRGFSFVLYYNNACADYSRQKMLNANFK--LDGNTPTISWADPKSTPDHSAAAS--QVKA 284
+RGF FV + + D + Q +L N K +G + A K+ Q+K
Sbjct: 202 SRGFGFVAFED---PDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKL 258
Query: 285 ----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAER 332
LYVKN+ D+ E++++ F G +T KV+M G+S + FGF+ ++
Sbjct: 259 ERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEGRS--KGFGFVCFSAP 316
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAG 384
A KAV + I + L V LA+ + D+K Y L + G
Sbjct: 317 EEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG 368
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 123/267 (46%), Gaps = 36/267 (13%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
Q+ S ++G+ FV + A+ S ++ L+G
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRV--NGMLLNGK--------------------- 167
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALKAVK 340
KN ++ + +K+K++F+++G +T VM R FGF+ + + +A +AV
Sbjct: 168 ------KNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVL 221
Query: 341 DTEKYEI-DGQVLEVVLAKPQTDKKTE 366
+ E+ +G+ + V A+ + +++ E
Sbjct: 222 ELNGKEVAEGKCMYVGRAQKKAERQQE 248
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 266 GVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVM--MEEGRSKGFGFVCFSAPEEATKAV 323
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 324 TEMNGRIIVTKPLYVALAQRK 344
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 129/271 (47%), Gaps = 16/271 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +E L +L IG V +R+ +D + S G+A+V++ + +KA++
Sbjct: 60 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 119
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
EL+ +KG+ R S+ + GN+ KN K + D I K
Sbjct: 120 ELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKV 179
Query: 223 PQNPSRN-RGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAAS 280
Q+ N +G+ FV Y + A Q + + N L+ + PK D +
Sbjct: 180 AQDEHGNSKGYGFVHYETDEAAS---QAIKHVNGMLLNEKKVYVGHHIPKK--DRQSKFE 234
Query: 281 QVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSA 335
++KA +YVKNI + + E+ +ELF + GEVT + + GK R FGF+++ +A
Sbjct: 235 EMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAA 294
Query: 336 LKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+AV + + GQ L V A+ + +++ E
Sbjct: 295 AQAVDELNGKDFRGQDLYVGRAQKKHEREEE 325
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 80/155 (51%), Gaps = 26/155 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + + ++E+ R+L G+V L +D+E G+S+GF
Sbjct: 226 KKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKSRGFG 284
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV+F + E A +A+DEL+ K+ +G+ + ++ K+
Sbjct: 285 FVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGV 344
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+I N+ + +D+ R + + GP + + ++++D
Sbjct: 345 NLYIKNLGDDVDDDKLRAMFSEYGP-ITSAKVMRD 378
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 141 DKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
D++ G+SKGF FV F + + A KA+ E++ + + GK + +L++ K+
Sbjct: 418 DRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKD 464
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 127/269 (47%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS----AA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ G++L A+ + +++ E
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 127/291 (43%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTP 273
++++++D N +R F FV + + + +++ +++ N K + G A +
Sbjct: 219 -SVKVMRD--NSGHSRCFGFVNFEKH---EEAQKAVVHMNGKEVSGRLLYAGRAQKRVER 272
Query: 274 DHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
+ Q+K LYVKN+ D+ +K+++ F +G +T VM G
Sbjct: 273 QNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
K FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 K-GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGTKPLYVALAQRK 371
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 138/305 (45%), Gaps = 38/305 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D E G SKG+ FV F ++E A +I+++
Sbjct: 92 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-EKGNSKGYGFVHFETEESANTSIEKV 150
Query: 169 HSKELKGKTIRC-----------SLSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L GK + L E K +LF KN+ ++ +++ E G
Sbjct: 151 NGMLLNGKKVYVGRFIPRKEREKELGE-KAKLFTNVYVKNFGDELNDETLKEMFEKYGTI 209
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-- 271
+IKD ++RGF FV + N A+++ Q+ LN +G + A K+
Sbjct: 210 TSHRVMIKD----GKSRGFGFVAFENPESAEHAVQE-LNGKELGEGKILYVGRAQKKNER 264
Query: 272 TPDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q+K LYVKN+ D+ E++++ F G +T KV++ G+S
Sbjct: 265 QMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVMLEEGRS 324
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTH 379
+ FGF+ ++ A KAV + + + L V LA+ + D+K Y +
Sbjct: 325 --KGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRMANMR 382
Query: 380 LPHAG 384
+ H G
Sbjct: 383 MQHMG 387
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 134/270 (49%), Gaps = 14/270 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 2 ASLYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 62 TMNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 121
Query: 223 PQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
Q+ N +G+ FV + A+ S +K+ L+G + P+ + A
Sbjct: 122 AQDEKGNSKGYGFVHFETEESANTSIEKV--NGMLLNGKKVYVGRFIPRKEREKELGEKA 179
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALK 337
+YVKN D + E +KE+F+++G +T +V++ GKS R FGF+ + SA
Sbjct: 180 KLFTNVYVKNFGDELNDETLKEMFEKYGTITSHRVMIKDGKS--RGFGFVAFENPESAEH 237
Query: 338 AVKDTEKYEI-DGQVLEVVLAKPQTDKKTE 366
AV++ E+ +G++L V A+ + +++ E
Sbjct: 238 AVQELNGKELGEGKILYVGRAQKKNERQME 267
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 285 GVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVM--LEEGRSKGFGFVCFSAAEEATKAV 342
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 343 TEMNGRIVGSKPLYVALAQRK 363
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 130/268 (48%), Gaps = 10/268 (3%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + +S G+A+V+F A++ +D
Sbjct: 12 TSLYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAERVLD 71
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ LKGK IR S+ L IGNV KN + K + D I K
Sbjct: 72 TMNFDLLKGKPIRIMWSQRDPSLRKSGIGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKV 131
Query: 223 P-QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
+ ++G+ FV + + A+ + +K+ L+G + P++ + +
Sbjct: 132 AIDDDGVSKGYGFVHFESIEAANKAIEKV--NGMLLNGKKVYVGKFIPRAEREKEIGEKS 189
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALKA 338
+ +YVKN N + E++ +LF+ +G +T VVM + FGFI + E SA KA
Sbjct: 190 KKYTNVYVKNFGRNLTQEQLYDLFKNYGTITSCVVMANPDGTSKGFGFIAFEEPESAEKA 249
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V + YE++G L V A+ ++++ E
Sbjct: 250 VTEMNNYELNGTNLYVGRAQKKSERIKE 277
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 131/284 (46%), Gaps = 36/284 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + + D G++ ++ D + G SKG+ FV F S E A KAI+++
Sbjct: 102 VFIKNLDKSIDNKAMYDTFSAFGNILSCKVAID-DDGVSKGYGFVHFESIEAANKAIEKV 160
Query: 169 HSKELKGKTIRC--------------SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK + S+ +++ N +N T+++ + ++ G +
Sbjct: 161 NGMLLNGKKVYVGKFIPRAEREKEIGEKSKKYTNVYVKNFGRNLTQEQLYDLFKNYGT-I 219
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--T 272
+ ++ +P S+ GF F+ + A+ + +M N++L+G + A KS
Sbjct: 220 TSCVVMANPDGTSK--GFGFIAFEEPESAEKAVTEM--NNYELNGTNLYVGRAQKKSERI 275
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K +Y+KN+ D +++++ F + G +T KV+ G+S
Sbjct: 276 KELKKCYEQMKLERYNRIQGANVYIKNLDDTFDNDRLRKEFSQFGAITSAKVMTEGGRS- 334
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
+ FGF+ ++ A KA+ + + I + + V LA+ D++
Sbjct: 335 -KGFGFVCFSTPEEASKAITEMDGRMIGSKPIYVALAQRYEDRR 377
>gi|195351033|ref|XP_002042041.1| GM26763 [Drosophila sechellia]
gi|194123865|gb|EDW45908.1| GM26763 [Drosophila sechellia]
Length = 816
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 110/216 (50%), Gaps = 25/216 (11%)
Query: 66 AEANRND----DDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
ANRN DD + T + GE E D P+ ++F+G +PK E
Sbjct: 315 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPD---------PDNIKMFVGQVPKSMDES 365
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGKT--I 178
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I
Sbjct: 366 QLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPI 425
Query: 179 RCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +F
Sbjct: 426 QMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAF 482
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNTP--TISWAD 268
V + A + + L+ N ++G T + +AD
Sbjct: 483 VTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFAD 518
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 729 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 788
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L + K+
Sbjct: 789 AIKAMNGFQVGTKRLKVQLKKPKD 812
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 127/269 (47%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS----AA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ G++L A+ + +++ E
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 127/291 (43%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTP 273
++++++D N +R F FV + + + +++ +++ N K + G A +
Sbjct: 219 -SVKVMRD--NSGHSRCFGFVNFEKH---EEAQKAVVHMNGKEVSGRLLYAGRAQKRVER 272
Query: 274 DHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
+ Q+K LYVKN+ D+ +K+++ F +G +T VM G
Sbjct: 273 QNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
K FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 K-GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGTKPLYVALAQRK 371
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 130/270 (48%), Gaps = 10/270 (3%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+GS +++G L + +E L ++ IG V +R+ +D + S G+A+V+F + A++
Sbjct: 43 PSGS-LYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAER 101
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+D L+ ++GK R S+ + +GNV KN + K + D I
Sbjct: 102 ALDTLNYSLIRGKPCRIMWSQRDPAVRKSGLGNVFIKNLDKTIDNKALLDTFSAFGNILS 161
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP-KSTPDHSAA 278
K + + ++G+ FV Y A+ + K+ ++G + P K +
Sbjct: 162 CKVVTDENGSKGYGFVHYETQEAAETAIAKV--NGMVINGKQVFVGIFVPRKERVELGEG 219
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK--SGKRDFGFIHYAERSSAL 336
++ ++VKN+P++T+ + ++F + G++T VV+ + FGF+ Y + A
Sbjct: 220 VTKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQ 279
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ G+ L V A+ + +++ E
Sbjct: 280 AAVNALNGTELAGKTLFVARAQKKAEREAE 309
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 129/288 (44%), Gaps = 38/288 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+ FV + ++E A+ AI ++
Sbjct: 135 VFIKNLDKTIDNKALLDTFSAFGNILSCKVVTD-ENG-SKGYGFVHYETQEAAETAIAKV 192
Query: 169 HSKELKGKTI----------RCSLSETKNR---LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
+ + GK + R L E + +F+ N+P++ T+ + G +
Sbjct: 193 NGMVINGKQVFVGIFVPRKERVELGEGVTKFTNVFVKNLPEDTTDAALNDMFSKFGK-IT 251
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA--NFKLDGNTPTISWADPKSTP 273
++ ++K + +++GF FV Y A Q +NA +L G T ++ A K+
Sbjct: 252 SVVIMKSSDD-DKSKGFGFVCYEKVEDA----QAAVNALNGTELAGKTLFVARAQKKAER 306
Query: 274 DHSAAAS------------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
+ Q LYVKN+ D +KI+ F G +T V +M K
Sbjct: 307 EAELKQRYDALRLERINKYQGINLYVKNLDDAIDEDKIRTEFAPFGTITSVKIMRDEKGK 366
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDG--QVLEVVLAKPQTDKKTE 366
R FGFI ++ A KAV + I G + L V LA+ D++ +
Sbjct: 367 SRGFGFICFSSAEEATKAVTEMNGQTIQGFPKPLYVALAQRAEDRRAQ 414
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 27/155 (17%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ VF+ LP+D ++ L D+ G + V +MK + +SKGF FV + E A+ A++
Sbjct: 224 TNVFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVN 283
Query: 167 ELHSKELKGKTIRCSL--------SETKNR----------------LFIGNVPKNWTEDE 202
L+ EL GKT+ + +E K R L++ N+ ED+
Sbjct: 284 ALNGTELAGKTLFVARAQKKAEREAELKQRYDALRLERINKYQGINLYVKNLDDAIDEDK 343
Query: 203 FRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
R G + ++++++D + S RGF F+ +
Sbjct: 344 IRTEFAPFGT-ITSVKIMRDEKGKS--RGFGFICF 375
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L E+ +R P G + V++M+D E G+S+GF F+ F S E A KA+
Sbjct: 327 GINLYVKNLDDAIDEDKIRTEFAPFGTITSVKIMRD-EKGKSRGFGFICFSSAEEATKAV 385
Query: 166 DELHSKELKG 175
E++ + ++G
Sbjct: 386 TEMNGQTIQG 395
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 135/330 (40%), Gaps = 55/330 (16%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G + ++ D +G SKG+ FV F + A +AI +
Sbjct: 114 IFIKNLDKSIDAKALHDTFSAFGKILSCKVATD-ANGVSKGYGFVHFEDQAAADRAIQTV 172
Query: 169 HSKELKGKTI----------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
+ KE++GK + R + +F+ N+P +DE K+ + G V +
Sbjct: 173 NQKEIEGKIVYVGPFQKRADRPQGKDVYTNVFVKNLPAELGDDELSKMATEFGE-VTSAV 231
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
++KD + S+ GF F+ + + CA + + N K G + K T +
Sbjct: 232 VMKDEKGSSK--GFGFINFKDAECAAKCVEAL---NDKEIGGKVLYAGRAQKKTEREAML 286
Query: 279 ASQVKA-------------LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDF 324
+V+ LYVKN+ D + +++LF G +T + SGK + F
Sbjct: 287 RQKVEESKQERYLKYQGMNLYVKNLADEVDDDALRDLFTSCGTITSCKVMKDTSGKSKGF 346
Query: 325 GFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE------------------ 366
GF+ + A +AV + + G+ L V LA+ + ++ +
Sbjct: 347 GFVCFTSHDEATRAVTEMNGKMVKGKPLYVALAQRKDVRRAQLEANVQNRLGMGAMTRPP 406
Query: 367 ----GTFPYSPGLVPTHLPHAGYGGFAGTP 392
G PY PG +P AG GG P
Sbjct: 407 NPMTGMGPYGPGAMPFF--AAGPGGMPAGP 434
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 128/276 (46%), Gaps = 21/276 (7%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK---E 159
P S +++G L KD +E L +L +G V +R+ +D + S G+A+V++ S +
Sbjct: 17 PLTNSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQ 76
Query: 160 FAKKAIDELHSKELKGKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVG 211
A++A++ L+ L GK +R S +FI N+ K+ G
Sbjct: 77 AAERAMETLNYHVLNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKSIDAKALHDTFSAFG 136
Query: 212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP-K 270
+ + ++ D S +G+ FV + + A AD + Q + +++G I + P +
Sbjct: 137 K-ILSCKVATDANGVS--KGYGFVHFEDQAAADRAIQTVNQK--EIEGK---IVYVGPFQ 188
Query: 271 STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHY 329
D ++VKN+P +++ ++ GEVT VVM K + FGFI++
Sbjct: 189 KRADRPQGKDVYTNVFVKNLPAELGDDELSKMATEFGEVTSAVVMKDEKGSSKGFGFINF 248
Query: 330 AERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKT 365
+ A K V+ EI G+VL A+ +T+++
Sbjct: 249 KDAECAAKCVEALNDKEIGGKVLYAGRAQKKTEREA 284
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
L G +++ L + ++ LRDL G + ++MKD SG+SKGF FV F S + A
Sbjct: 299 LKYQGMNLYVKNLADEVDDDALRDLFTSCGTITSCKVMKDT-SGKSKGFGFVCFTSHDEA 357
Query: 162 KKAIDELHSKELKGKTIRCSLSETKN 187
+A+ E++ K +KGK + +L++ K+
Sbjct: 358 TRAVTEMNGKMVKGKPLYVALAQRKD 383
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 132/269 (49%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D+ + S G+A V+F+ E A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS----AA 278
+ + ++G+ FV + A+ + +KM N F N + KS D A
Sbjct: 131 VCDENGSKGYGFVHFETQEEAERAIEKM-NGMFL---NDRKVFVGRFKSRRDRQAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
A + +Y+KN+ ++ E++++LF R G V + +SGK + FGF+ + A K
Sbjct: 187 AKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV + +++G+ + V A+ + +++TE
Sbjct: 247 AVDEMNGKDLNGKQIYVGRAQKKVERQTE 275
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +D+ A+L A + V+I L +D +E L+DL G V++M D ESG+SKG
Sbjct: 174 KSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A+KA+DE++ K+L GK I ++ K
Sbjct: 233 FGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKK 269
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 140/322 (43%), Gaps = 54/322 (16%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+F+ L + + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEEAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N+ ++ ++ + + GP +
Sbjct: 159 NGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPAL 218
Query: 215 ETIELIKDPQNPSRNRGFSFV------------------------LYYNNACADYSRQKM 250
+++++ D +++GF FV +Y A RQ
Sbjct: 219 -SVKVMTD--ESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTE 275
Query: 251 LNANF-KLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309
L F ++ + P I + P + Q LYVKN+ D E++++ F G +
Sbjct: 276 LKHKFGQMKQDKPKI-----EQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTI 330
Query: 310 T--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEG 367
T KV M G+S + FGF+ ++ A KAV + + + L V LA+ + +++
Sbjct: 331 TSAKVTMEGGRS--KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHL 388
Query: 368 TFPYSPGLVPTH-LPHAGYGGF 388
+ Y + T +P+ G F
Sbjct: 389 SNQYMQRMASTSAVPNPGINPF 410
>gi|24583873|ref|NP_723737.1| arrest, isoform B [Drosophila melanogaster]
gi|442627569|ref|NP_001260403.1| arrest, isoform G [Drosophila melanogaster]
gi|22946318|gb|AAN10810.1| arrest, isoform B [Drosophila melanogaster]
gi|375065944|gb|AFA28453.1| FI19388p1 [Drosophila melanogaster]
gi|440213733|gb|AGB92938.1| arrest, isoform G [Drosophila melanogaster]
Length = 810
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 110/216 (50%), Gaps = 25/216 (11%)
Query: 66 AEANRND----DDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
ANRN DD + T + GE E D P+ ++F+G +PK E
Sbjct: 321 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPD---------PDNIKMFVGQVPKSMDES 371
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGKT--I 178
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I
Sbjct: 372 QLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKTLNGMYHPI 431
Query: 179 RCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +F
Sbjct: 432 QMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAF 488
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNTP--TISWAD 268
V + A + + L+ N ++G T + +AD
Sbjct: 489 VTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFAD 524
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 723 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 782
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L + K+
Sbjct: 783 AIKAMNGFQVGTKRLKVQLKKPKD 806
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 132/274 (48%), Gaps = 15/274 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 52 PHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 112 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 171
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 172 CKVAQDEFGNSKGYGFV-HYETAEAATNAIKHVNGMLL---NEKKVFVGHHIAKKDRQSK 227
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK-RDFGFIHYAER 332
++KA +YVKN+ + E+ +ELF ++G++T + ++GK R FGF+++ +
Sbjct: 228 FEEMKANFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKH 287
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV++ E GQ L V A+ + +++ E
Sbjct: 288 ESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEE 321
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 92/385 (23%), Positives = 159/385 (41%), Gaps = 56/385 (14%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ L + E+ R+L GD+ + D E+G+S+GF
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFG 280
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIEDV 210
FV+F E A A++EL+ KE KG+ +L++G K E+E RK E
Sbjct: 281 FVNFVKHESAAAAVEELNDKEFKGQ-----------KLYVGRAQKKHEREEELRKQHEAA 329
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI-----S 265
+ S+ +G + LY N D +K+ + F GN + +
Sbjct: 330 -----------RVEKASKYQGVN--LYVKNLTDDIDDEKLRDL-FIGFGNITSARVMRDT 375
Query: 266 WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFG 325
AD S + S + + + ++ E + + +K + + FG
Sbjct: 376 IADAGSESEKEKEISNKENVKEEAKKESAEEESSDKSDKAEKSDSKKTLEKKLGKSKGFG 435
Query: 326 FIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGY 385
F+ ++ A KAV + + ++G+ L V LA+ + +K++ A
Sbjct: 436 FVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQ--------------LEASI 481
Query: 386 GGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMH-MVPMVLPDGQIGYVL--QQPGV 442
V G++ F QP +Y P G +P GQ G + QQPG+
Sbjct: 482 QARNTIRQQQVAAAAGMSQPFMQPAVY----YPPGQQGFIPT--NAGQRGGMAFGQQPGM 535
Query: 443 QMP-PPRPRRVDRSNG-PGGRGGRG 465
+P P R + G PG +GGRG
Sbjct: 536 VLPGMPGGRPGQFAGGFPGQQGGRG 560
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 127/269 (47%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS----AA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ G++L A+ + +++ E
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 127/291 (43%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTP 273
++++++D N +R F FV + + + +++ +++ N K + G A +
Sbjct: 219 -SVKVMRD--NSGHSRCFGFVNFEKH---EEAQKAVVHMNGKEVSGRLLYAGRAQKRVER 272
Query: 274 DHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
+ Q+K LYVKN+ D+ +K+++ F +G +T VM G
Sbjct: 273 QNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
K FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 K-GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGTKPLYVALAQRK 371
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 127/266 (47%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D S S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ +R S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + +RG FV + A + + M N D + K + A A +
Sbjct: 131 VCDENGSRGHGFVHFETQEAATRAIETM-NGMLLNDRKVFVGHFKSRKEREAEFGARAME 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+Y+KN D+ +++E+F R G+ V VM + FGF+++ + A KAV
Sbjct: 190 FTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVA 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
D EI+G+++ V A+ + ++++E
Sbjct: 250 DMNGKEINGRMVYVGRAQKRLERQSE 275
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 134/313 (42%), Gaps = 38/313 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ +++ D E+G S+G FV F ++E A +AI+ +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCD-ENG-SRGHGFVHFETQEAATRAIETM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ R++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--- 270
+++++ D N R++GF FV + + + +++ + + N K ++G + A +
Sbjct: 219 -SVKVMMD--NTGRSKGFGFVNFEKH---EEAQKAVADMNGKEINGRMVYVGRAQKRLER 272
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
+ Q LYVKN+ D E++++ F +G +T VM G
Sbjct: 273 QSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHS 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTH- 379
K FGF+ ++ A KAV + + + L V LA+ + ++K T Y L
Sbjct: 333 K-GFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRA 391
Query: 380 LPHAGYGGFAGTP 392
LP G F P
Sbjct: 392 LPGPFLGSFQPPP 404
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+ A + V+I D + LR++ G V++M D +G SKG
Sbjct: 174 KSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-NTGRSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ +++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVADMNGKEINGRMV 261
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVSTKPLYVALAQRK 371
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 132/274 (48%), Gaps = 15/274 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 112 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 171
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 172 CKVAQDEFGNSKGYGFV-HYETAEAAQNAIKHVNGMLL---NDKKVFVGHHIAKKDRQSK 227
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGK-RDFGFIHYAER 332
++KA +YVKNI +T+ E+ ++LF++ GE+T + +SGK R FGF+++
Sbjct: 228 FEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSH 287
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A AV+ + GQ L V A+ + +++ E
Sbjct: 288 DNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEE 321
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 130/285 (45%), Gaps = 38/285 (13%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + +D +EE+ RDL E G++ L +D ESG+S+GF
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIEDV 210
FV+F S + A A++ L+ K+ KG+ +L++G K+ E+E RK E
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQ-----------KLYVGRAQKKHEREEELRKQYE-- 327
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM--LNANFKLDGNTPTISWAD 268
IE S+ +G + LY N D +K+ L +++ + +
Sbjct: 328 ---AARIE------KASKYQGVN--LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFA 376
Query: 269 PKSTPDH-------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
P+ST D S + DN + KE + P GKS
Sbjct: 377 PESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKE--NKAESKKSEKKPLGKS-- 432
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KAV + + + G+ L V LA+ + ++++
Sbjct: 433 KGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQ 477
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 129/271 (47%), Gaps = 16/271 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +E L +L IG V +R+ +D + S G+A+V++ + +KA++
Sbjct: 60 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 119
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
EL+ +KG+ R S+ + GN+ KN K + D I K
Sbjct: 120 ELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKV 179
Query: 223 PQNPSRN-RGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAAS 280
Q+ N +G+ FV Y + A Q + + N L+ + PK D +
Sbjct: 180 AQDEHGNSKGYGFVHYETDEAAS---QAIKHVNGMLLNEKKVYVGHHIPKK--DRQSKFE 234
Query: 281 QVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSA 335
++KA +YVKNI + + E+ +ELF + GEVT + + GK R FGF+++ +A
Sbjct: 235 EMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAA 294
Query: 336 LKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+AV + + GQ L V A+ + +++ E
Sbjct: 295 AQAVDELNGKDFRGQDLYVGRAQKKHEREEE 325
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 80/155 (51%), Gaps = 26/155 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + + ++E+ R+L G+V L +D+E G+++GF
Sbjct: 226 KKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKTRGFG 284
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV+F + E A +A+DEL+ K+ +G+ + ++ K+
Sbjct: 285 FVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGV 344
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+I N+ + +D+ R + + GP + + ++++D
Sbjct: 345 NLYIKNLGDDVDDDKLRAMFSEYGP-ITSAKVMRD 378
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 141 DKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
D++ G+SKGF FV F + + A KA+ E++ + + GK + +L++ K+
Sbjct: 417 DRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKD 463
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 127/269 (47%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS----AA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 VCDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ G++L A+ + +++ E
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 128/291 (43%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ +++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTP 273
++++++D N +R F FV + + + +++ +++ N K + G A +
Sbjct: 219 -SVKVMRD--NSGHSRCFGFVNFEKH---EEAQKAVVHMNGKEVSGRLLYAGRAQKRVER 272
Query: 274 DHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
+ Q+K LYVKN+ D+ +K+++ F +G +T VM G
Sbjct: 273 QNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
K FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 K-GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGTKPLYVALAQRK 371
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 143/347 (41%), Gaps = 53/347 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + + L D GD+ ++ D E+G+S+GFAFV + + E A AI +
Sbjct: 138 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAV 196
Query: 169 HSKELK----------GKTIRCS----LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK R S L ++I NV T+ EF +++ GP +
Sbjct: 197 NGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTI 256
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACA----DYSRQKMLNANFKLDGNTPTISWADPK 270
++ L +D Q S+ GF FV Y N+ A D +K +N G T S + +
Sbjct: 257 -SVALSRDEQGVSK--GFGFVNYENHESAKQAVDELNEKEINGKKLYAGRAQTKSEREAE 313
Query: 271 STPDH------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRD 323
H + A S LY+KN+ D ++++ F+ G +T VM R
Sbjct: 314 LKKSHEEKRIENEAKSAGVNLYIKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRG 373
Query: 324 FGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK----------PQTDKKTEGTFPYSP 373
FGF+ Y+ A KAV + I + L V LA+ Q ++ + Y
Sbjct: 374 FGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQRMQYGA 433
Query: 374 GLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYG---RGPM 417
G G G+ G P G+ G+ QPM RGPM
Sbjct: 434 GF-------PGMQGYMGQPM----YGYPPMPGYGQPMPGMPPVRGPM 469
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 31/195 (15%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+K++ +++ L + V+I + + ++ + DL +P G V L +D E G SKGF
Sbjct: 214 KKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EQGVSKGFG 272
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV++ + E AK+A+DEL+ KE+ GK + ++TK+
Sbjct: 273 FVNYENHESAKQAVDELNEKEINGKKLYAGRAQTKSEREAELKKSHEEKRIENEAKSAGV 332
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
L+I N+ W +D R E G + + ++++D S RGF FV Y + D +
Sbjct: 333 NLYIKNLDDEWDDDRLRAEFEAFGT-ITSSKVMRDDSGVS--RGFGFVCY---SSPDEAT 386
Query: 248 QKMLNANFKLDGNTP 262
+ + N K+ G P
Sbjct: 387 KAVSEMNGKMIGTKP 401
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 119/270 (44%), Gaps = 14/270 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +E L ++ IG V +R+ +D + S G+A+V++ + ++A++
Sbjct: 48 ASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 107
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L+ +KG++ R S+ + +FI N+ ++ G + +
Sbjct: 108 HLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFG---DILS 164
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH-SA 277
++RGF+FV Y AD + K +N D K
Sbjct: 165 CKVGTDENGKSRGFAFVHYSTGEAAD-AAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEE 223
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSAL 336
+Q +Y+KN+ + + ++L + G V + + G + FGF++Y SA
Sbjct: 224 LRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEQGVSKGFGFVNYENHESAK 283
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+AV + + EI+G+ L A+ +++++ E
Sbjct: 284 QAVDELNEKEINGKKLYAGRAQTKSEREAE 313
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L + ++ LR E G + ++M+D +SG S+GF FV + S + A KA+
Sbjct: 331 GVNLYIKNLDDEWDDDRLRAEFEAFGTITSSKVMRD-DSGVSRGFGFVCYSSPDEATKAV 389
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ K + K + +L++ K+
Sbjct: 390 SEMNGKMIGTKPLYVALAQRKD 411
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 129/273 (47%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 42 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 101
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 102 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNILS 161
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + S D +
Sbjct: 162 CKVAQDEFANSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 217
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +Y+KNI + ++ + +F+ GE+T + + GK R FGF++YA
Sbjct: 218 FEEMKANFTNIYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQDGKSRGFGFVNYANHE 277
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV + + E+ Q L V A+ + +++ E
Sbjct: 278 SAEAAVAEMNEKEVKTQKLYVGRAQKKHEREEE 310
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 28/226 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E SKG+ FV + + E A AI +
Sbjct: 135 VFIKNLDNAIDNKALHDTFAAFGNILSCKVAQD-EFANSKGYGFVHYETAEAANNAIKHV 193
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K ++I N+ T+DEFR + E G +
Sbjct: 194 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDLEITDDEFRVMFEAFGE-I 252
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD----GNTPTISWADPK 270
+ L D ++RGF FV Y N+ A+ + +M K G + +
Sbjct: 253 TSATLSHD--QDGKSRGFGFVNYANHESAEAAVAEMNEKEVKTQKLYVGRAQKKHEREEE 310
Query: 271 STPDHSAA----ASQVKA--LYVKNIPDNTSTEKIKELFQRHGEVT 310
+ AA AS+ + LYVKN+ D+ EK+++LF +G +T
Sbjct: 311 LRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEKLRDLFTPYGTIT 356
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 131 GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
G+ E + + K G+SKGF FV F S + A KA+ E++ + + K + +L++ K+
Sbjct: 409 GEASEEKKAEKKAFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNAKPLYVALAQRKD 465
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 132/274 (48%), Gaps = 15/274 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 52 PHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 112 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 171
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 172 CKVAQDEFGNSKGYGFV-HYETAEAATNAIKHVNGMLL---NEKKVFVGHHIAKKDRQSK 227
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK-RDFGFIHYAER 332
++KA +YVKN+ + E+ +ELF ++G++T + ++GK R FGF+++ +
Sbjct: 228 FEEMKANFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKH 287
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV++ E GQ L V A+ + +++ E
Sbjct: 288 ESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEE 321
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 92/385 (23%), Positives = 160/385 (41%), Gaps = 56/385 (14%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ L + + E+ R+L GD+ + D E+G+S+GF
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFG 280
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIEDV 210
FV+F E A A++EL+ KE KG+ +L++G K E+E RK E
Sbjct: 281 FVNFVKHESAAAAVEELNDKEFKGQ-----------KLYVGRAQKKHEREEELRKQHEAA 329
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI-----S 265
+ S+ +G + LY N D +K+ + F GN + +
Sbjct: 330 -----------RVEKASKYQGVN--LYVKNLTDDIDDEKLRDL-FIGFGNITSARVMRDT 375
Query: 266 WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFG 325
AD S + S + + + ++ E + + +K + + FG
Sbjct: 376 IADAGSESEKEKEISNKENVKEEAKKESAEEESSDKSDKAEKSDSKKTLEKKLGKSKGFG 435
Query: 326 FIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGY 385
F+ ++ A KAV + + ++G+ L V LA+ + +K++ A
Sbjct: 436 FVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQ--------------LEASI 481
Query: 386 GGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMH-MVPMVLPDGQIGYVL--QQPGV 442
V G++ F QP +Y P G +P GQ G + QQPG+
Sbjct: 482 QARNTIRQQQVAAAAGMSQPFMQPAVY----YPPGQQGFIPA--NAGQRGGMAFGQQPGM 535
Query: 443 QMP-PPRPRRVDRSNG-PGGRGGRG 465
+P P R + G PG +GGRG
Sbjct: 536 VLPGMPGGRPGQFAGGFPGQQGGRG 560
>gi|195578717|ref|XP_002079210.1| GD23828 [Drosophila simulans]
gi|194191219|gb|EDX04795.1| GD23828 [Drosophila simulans]
Length = 821
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 110/216 (50%), Gaps = 25/216 (11%)
Query: 66 AEANRND----DDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
ANRN DD + T + GE E D P+ ++F+G +PK E
Sbjct: 320 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPD---------PDNIKMFVGQVPKSMDES 370
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGKT--I 178
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I
Sbjct: 371 QLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPI 430
Query: 179 RCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +F
Sbjct: 431 QMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAF 487
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNTP--TISWAD 268
V + A + + L+ N ++G T + +AD
Sbjct: 488 VTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFAD 523
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 734 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 793
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L + K+
Sbjct: 794 AIKAMNGFQVGTKRLKVQLKKPKD 817
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 98/377 (25%), Positives = 161/377 (42%), Gaps = 45/377 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + + L D GD+ ++ D E G SKG+ FV + + E A+ AI +
Sbjct: 263 IFIKNLDETIDNKALHDTFAAFGDILSCKVATD-EHGASKGYGFVHYVTGESAEAAIKGV 321
Query: 169 HSKELKGKTI-----------RCSLSETKNR---LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ +L K + + + E +++ L+I N+P T +E +V GP +
Sbjct: 322 NGMQLNDKVVFVGIHVPRRDRQAKIDEVRSQFTNLYIKNLPTETTTEELNEVFGKFGP-I 380
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ + D ++RGF FV Y N+ A + + + ++K GN ++ A ++ D
Sbjct: 381 TSAAVQSDEHG--KHRGFGFVNYENHESASKAVDALHDKDYK--GNVLYVARAQKRTERD 436
Query: 275 ------------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+ Q LYVKN+ D EK++ F G +T VM K
Sbjct: 437 AELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKGTS 496
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK--TEGTFPYSPGLVPTH 379
+ FGF+ ++ A KAV + + + L V LA+ + +K E +
Sbjct: 497 KGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQRKEVRKQQLEAQMSQRSQMRSQQ 556
Query: 380 LPHAGYGGFAGTPYGSVGTG--FGVAAGFQ----QPMIYGRGPMPSGMHMVPMVLPDGQI 433
+ A G G PYG+ FG AA + + M+Y MP+GM P P GQ+
Sbjct: 557 IAAA---GIPGAPYGAPPNPMYFGGAAAYPPHGGRGMMYPPNGMPAGMPPRPRYAPPGQM 613
Query: 434 GYVLQQPGVQMPPPRPR 450
+ PG PP P+
Sbjct: 614 A-PMGMPGGAPYPPHPQ 629
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 134/276 (48%), Gaps = 21/276 (7%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
PN S +++G L +E L ++ IG V +R+ +D + S G+A+V++ + A++
Sbjct: 171 PNTS-LYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAER 229
Query: 164 AIDELHSKELKGKTIRC-------SLSET-KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A+++L+ +K K R SL +T + +FI N+ + G +
Sbjct: 230 ALEQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFG-DIL 288
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
+ ++ D S +G+ FV Y A+ + K +N +L+ + P+ D
Sbjct: 289 SCKVATDEHGAS--KGYGFVHYVTGESAE-AAIKGVNG-MQLNDKVVFVGIHVPRR--DR 342
Query: 276 SAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYA 330
A +V++ LY+KN+P T+TE++ E+F + G +T + + GK R FGF++Y
Sbjct: 343 QAKIDEVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYE 402
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA KAV + G VL V A+ +T++ E
Sbjct: 403 NHESASKAVDALHDKDYKGNVLYVARAQKRTERDAE 438
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L + +E L++ P G + ++MKD E G SKGF FV F S + A KA+
Sbjct: 456 GVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKD-EKGTSKGFGFVCFSSPDEATKAV 514
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ K L K + SL++ K
Sbjct: 515 AEMNGKMLGSKPLYVSLAQRK 535
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 93/203 (45%), Gaps = 32/203 (15%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
+D+ A++ + + ++I LP + + E+L ++ G + + D E G+ +GF F
Sbjct: 340 RDRQAKIDEVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSD-EHGKHRGFGF 398
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------R 188
V++ + E A KA+D LH K+ KG + + ++ +
Sbjct: 399 VNYENHESASKAVDALHDKDYKGNVLYVARAQKRTERDAELKKAHEQQKYETTLKYQGVN 458
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
L++ N+ + +++ + G + + +++KD + S +GF FV + + D + +
Sbjct: 459 LYVKNLDDEYDDEKLQNEFTPFG-TITSCKVMKDEKGTS--KGFGFVCF---SSPDEATK 512
Query: 249 KMLNANFKLDGNTPT-ISWADPK 270
+ N K+ G+ P +S A K
Sbjct: 513 AVAEMNGKMLGSKPLYVSLAQRK 535
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 157/328 (47%), Gaps = 22/328 (6%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPN------GSE 108
SK GA + +A + +++ +V +E T S E ++K ++ + P+ +
Sbjct: 23 SKNGA--ETTTASTVQKENNKENVTKESTETESKKETTQEKSSEASSGTPSDGNAPKNTS 80
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+++G L +E L ++ +G V +R+ +D + +S G+A+V++ + + +KA++EL
Sbjct: 81 LYVGELDPSVTEAMLFEIFSTVGPVASIRVCRDAVTRQSLGYAYVNYHNADDGEKALEEL 140
Query: 169 HSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
+ +KG+ R S+ + + GN+ KN K + D TI K
Sbjct: 141 NYSLIKGRACRIMWSQRDPSLRKTGTGNIFIKNLDPAIDNKALHDTFSAFGTILSCKVAL 200
Query: 225 NPSRN-RGFSFVLYYN----NACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ N +G+ FV + + NA ++ +LN G+ +S D +S A
Sbjct: 201 DEYGNSKGYGFVHFASIDSANAAIEHVNGMLLNDKKVYVGH--HVSRRDRQS--KFEAMK 256
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338
+ +Y+KNI + E+ LF++ G +T + +SGK R FGF+++ +A KA
Sbjct: 257 ANFTNVYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKPRGFGFVNFESHEAAQKA 316
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V + YE G+ L V A+ + +++ E
Sbjct: 317 VDEMNDYEFHGKKLYVGRAQKRHEREAE 344
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 120/285 (42%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D E G SKG+ FV F S + A AI+ +
Sbjct: 169 IFIKNLDPAIDNKALHDTFSAFGTILSCKVALD-EYGNSKGYGFVHFASIDSANAAIEHV 227
Query: 169 HSKELKGKTIRC--------------SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + ++ ++I N+ T++EF + E G +
Sbjct: 228 NGMLLNDKKVYVGHHVSRRDRQSKFEAMKANFTNVYIKNIDPEVTDEEFSGLFEKFG-AI 286
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L+KD + RGF FV + ++ A + +M +++ G + A + +
Sbjct: 287 TSFSLVKD--ESGKPRGFGFVNFESHEAAQKAVDEM--NDYEFHGKKLYVGRAQKRHERE 342
Query: 275 ------------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ Q L++KN+ D +K F G +T + ++GK
Sbjct: 343 AELRKRYEQMKLEKMSKYQGVNLFIKNLSDEVDDNLLKTEFSAFGTITSAKVMTDENGKS 402
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ Y+ A KA+ + + + G+ L V LA+ + ++++
Sbjct: 403 KGFGFVCYSSPEEATKAIAEMNQRMLAGKPLYVALAQRKDVRRSQ 447
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L + + L+ G + ++M D E+G+SKGF FV + S E A KAI
Sbjct: 362 GVNLFIKNLSDEVDDNLLKTEFSAFGTITSAKVMTD-ENGKSKGFGFVCYSSPEEATKAI 420
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + L GK + +L++ K+
Sbjct: 421 AEMNQRMLAGKPLYVALAQRKD 442
>gi|410076202|ref|XP_003955683.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
gi|372462266|emb|CCF56548.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
Length = 582
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 132/269 (49%), Gaps = 14/269 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E K A
Sbjct: 38 NSTSLYVGDLDPSVSEALLYDIFSPIGSVTSIRVCRDAITKTSLGYAYVNFADHEAGKVA 97
Query: 165 IDELHSKELKGKTIRCSLSETKNRLFI---GNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
I+ L+ +KG+ R S+ L GN+ KN D K + D I
Sbjct: 98 IERLNYTPIKGRLCRIMWSQRDPALRKKGNGNIFIKNLNADIDNKALYDTFSVFGNILSS 157
Query: 221 KDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGN----TPTISWADPKSTPDH 275
K + + N +GF FV ++ A LN L+G P +S + S +
Sbjct: 158 KIATDENGNSKGFGFV-HFEEEAAAKEAIDALNGML-LNGQEIYVAPHLSRKERDSQLEK 215
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ A +YVKN+P +T+ E+ KELF++ G+ + +V+ G+ GK + FGF++Y
Sbjct: 216 TRA--NFTNVYVKNVPLDTTEEEFKELFEKPGKTSSIVLEKGEDGKLKGFGFVNYENHED 273
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363
ALKAV++ E GQ L V A+ + ++
Sbjct: 274 ALKAVEELNNTEFKGQELYVGRAQKKYER 302
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 155/353 (43%), Gaps = 51/353 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D G++ ++ D E+G SKGF FV F + AK+AID L
Sbjct: 130 IFIKNLNADIDNKALYDTFSVFGNILSSKIATD-ENGNSKGFGFVHFEEEAAAKEAIDAL 188
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L +T+ +++ NVP + TE+EF+++ E G
Sbjct: 189 NGMLLNGQEIYVAPHLSRKERDSQLEKTRANFTNVYVKNVPLDTTEEEFKELFEKPG--- 245
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+T ++ + + +GF FV Y N+ A + +++ N FK G + A K
Sbjct: 246 KTSSIVLEKGEDGKLKGFGFVNYENHEDALKAVEELNNTEFK--GQELYVGRAQKKYERM 303
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+T A Q L++KN+ D+ EK+KE F G +T + ++GK
Sbjct: 304 QALKQQYEATRLEKMAKYQGVNLFIKNLDDSIDDEKLKEEFAPFGTITSTKVMRTENGKS 363
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++ + +
Sbjct: 364 KGFGFVCFSSPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRSQ---------LAQQIQ 414
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYG---------RGPMPSGMHMVP 425
+ + G+ F PM YG GP P M+ VP
Sbjct: 415 ARSQMRYQQATAAAAAAAAGIPGQFMPPMFYGVMPPRGVPFNGPNPQQMNGVP 467
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L +E L++ P G + ++M+ E+G+SKGF FV F S E A KAI
Sbjct: 323 GVNLFIKNLDDSIDDEKLKEEFAPFGTITSTKVMRT-ENGKSKGFGFVCFSSPEEATKAI 381
Query: 166 DELHSKELKGKTIRCSLSETK 186
E + + + GK + ++++ K
Sbjct: 382 TEKNQQIVAGKPLYVAIAQRK 402
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 132/284 (46%), Gaps = 22/284 (7%)
Query: 100 LALPPNGS----EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSF 155
+ PPN + ++IG L D +E L + G V +R+ +D S S G+A+V+F
Sbjct: 41 MGYPPNATYSMASLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNF 100
Query: 156 RSKEFAKKAIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVI 207
+ A++A+D ++ + + G+ +R S+ +FI N+ +
Sbjct: 101 QQPADAERALDTMNFETIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTF 160
Query: 208 EDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267
G + + ++ D S RG+ FV + A + +K+ L G +
Sbjct: 161 SLFG-NILSCKVAADEDGSS--RGYGFVHFETEESAQIAIEKV--NGMLLSGKKVYVGKF 215
Query: 268 DPKSTPDHSAAASQVKA--LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDF 324
++ S +K ++VKN ++ EK+ ++F ++GE+T V+ GK + F
Sbjct: 216 QTRAQRLKELGESGLKYTNVFVKNFGEHLDQEKLTKMFSKYGEITSAVVMTDADGKPKGF 275
Query: 325 GFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGT 368
GF+ YA+ +A KAV D + ++G L++ + + Q KK+E T
Sbjct: 276 GFVAYADPDAAQKAVDDLNEKTLEGTDLKLSVCRAQ--KKSERT 317
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 72/336 (21%), Positives = 136/336 (40%), Gaps = 57/336 (16%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + + + D G++ ++ D E G S+G+ FV F ++E A+ AI+++
Sbjct: 142 IFIKNLDRVIDNKSIYDTFSLFGNILSCKVAAD-EDGSSRGYGFVHFETEESAQIAIEKV 200
Query: 169 HSKELKGKTIRCSLSETKNR--------------LFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK + +T+ + +F+ N ++ +++ K+ G
Sbjct: 201 NGMLLSGKKVYVGKFQTRAQRLKELGESGLKYTNVFVKNFGEHLDQEKLTKMFSKYGEIT 260
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYN-----NACADYSRQKMLNANFKLDGNTPTISWADP 269
+ + P +GF FV Y + A D + + + + KL ++ A
Sbjct: 261 SAVVMTDADGKP---KGFGFVAYADPDAAQKAVDDLNEKTLEGTDLKL-----SVCRAQK 312
Query: 270 KS--TPDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG 317
KS T D +K LYVKNI + + E ++ F G +T +
Sbjct: 313 KSERTADLKRKYEALKQERVQRYQGVNLYVKNIDEELTDEGLRAHFASFGTITSAKVMVD 372
Query: 318 KSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYS---- 372
++G+ + FGF+ + + A AV + + + L V LA+ + D++ + Y
Sbjct: 373 ENGRSKGFGFVCFEKPEEATAAVTEMNSKMMGSKPLYVALAQRKEDRRAQLASQYMQKLA 432
Query: 373 -----------PGLVPTHLPHAGYGGFAGTPYGSVG 397
PG+ P + P G F P + G
Sbjct: 433 TLRMGQQTNGVPGMAPIY-PQGQQGFFVPNPMAAQG 467
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ + ++ ++E LR G + ++M D E+G SKGF FV F E A A+
Sbjct: 337 GVNLYVKNIDEELTDEGLRAHFASFGTITSAKVMVD-ENGRSKGFGFVCFEKPEEATAAV 395
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++SK + K + +L++ K
Sbjct: 396 TEMNSKMMGSKPLYVALAQRK 416
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 127/269 (47%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS----AA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 VCDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ G++L A+ + +++ E
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 118/302 (39%), Gaps = 59/302 (19%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ +++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 215 ETIELIKDPQNPSRNRGFSFV------------------------LYYNNACADYSRQKM 250
++++++D N +R F FV LY A RQ
Sbjct: 219 -SVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
L F+ Q LYVKN+ D+ +K+++ F +G +T
Sbjct: 276 LKRRFE--------------QMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVIT 321
Query: 311 KV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTF 369
VM G K FGF+ ++ A KAV + + + L V LA+ + ++K T
Sbjct: 322 SAKVMTEGGHSK-GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTN 380
Query: 370 PY 371
Y
Sbjct: 381 QY 382
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGTKPLYVALAQRK 371
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 131/284 (46%), Gaps = 25/284 (8%)
Query: 102 LPPNGS-------EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
LPP S +++G L +E + ++ IG V +R+ +D + S G+A+V+
Sbjct: 33 LPPQTSISSAPSASLYVGELDPTVTEAMIFEIFNMIGPVASIRVCRDAVTRRSLGYAYVN 92
Query: 155 FRSKEFAKKAIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKV 206
+ + ++A+++L+ +KG+ R S+ + +FI N+ +
Sbjct: 93 YLNTADGERALEQLNYSLIKGRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDT 152
Query: 207 IEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT---PT 263
G V + ++ D Q R++G+ FV +Y A A + K +N D P
Sbjct: 153 FVAFG-NVLSCKVATDEQG--RSKGYGFV-HYETAEAAETAIKAVNGMLLNDKKVYVGPH 208
Query: 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-R 322
I + +S D A Q LY+KN+ + E+ +ELF R+G VT ++ G+ +
Sbjct: 209 IPRKERQSKLDEMKA--QFTNLYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDEGRSK 266
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
FGF++Y A AV + ++ G+ L V A+ + +++ E
Sbjct: 267 GFGFVNYESHEEAQAAVDNLHDTDLKGKKLYVTRAQKKAEREEE 310
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 119/277 (42%), Gaps = 33/277 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + + L D G+V ++ D E G SKG+ FV + + E A+ AI +
Sbjct: 135 IFIKNLDEQIDNKALHDTFVAFGNVLSCKVATD-EQGRSKGYGFVHYETAEAAETAIKAV 193
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + L E K L+I N+ T++EF ++ G
Sbjct: 194 NGMLLNDKKVYVGPHIPRKERQSKLDEMKAQFTNLYIKNLDTEVTQEEFEELFNRYGSVT 253
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
I + D R++GF FV Y ++ A + + + + K G ++ A K+ +
Sbjct: 254 SAIVQVDDE---GRSKGFGFVNYESHEEAQAAVDNLHDTDLK--GKKLYVTRAQKKAERE 308
Query: 275 HSAAASQVKA------------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
S +A LYVKN+ D+ +K++ F+ G +T VM K
Sbjct: 309 EELRRSYEQAKMEKLSKYQGVNLYVKNLEDDVDDDKLRAEFEPFGTITSCKVMSDEKGSS 368
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
+ FGF+ ++ A KA+ + I + L V LA+
Sbjct: 369 KGFGFVCFSSPDEATKAIAEMNNKMIGSKPLYVSLAQ 405
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 93 KDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF 152
K++ ++L + + ++I L + ++E+ +L G V + D E G SKGF F
Sbjct: 212 KERQSKLDEMKAQFTNLYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDE-GRSKGFGF 270
Query: 153 VSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------R 188
V++ S E A+ A+D LH +LKGK + + ++ K
Sbjct: 271 VNYESHEEAQAAVDNLHDTDLKGKKLYVTRAQKKAEREEELRRSYEQAKMEKLSKYQGVN 330
Query: 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
L++ N+ + +D+ R E G + + +++ D + S +GF FV + + D + +
Sbjct: 331 LYVKNLEDDVDDDKLRAEFEPFG-TITSCKVMSDEKGSS--KGFGFVCF---SSPDEATK 384
Query: 249 KMLNANFKLDGNTP 262
+ N K+ G+ P
Sbjct: 385 AIAEMNNKMIGSKP 398
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L D ++ LR EP G + ++M D E G SKGF FV F S + A KAI
Sbjct: 328 GVNLYVKNLEDDVDDDKLRAEFEPFGTITSCKVMSD-EKGSSKGFGFVCFSSPDEATKAI 386
Query: 166 DELHSKELKGKTIRCSLSETK 186
E+++K + K + SL++ +
Sbjct: 387 AEMNNKMIGSKPLYVSLAQRR 407
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 132/274 (48%), Gaps = 15/274 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 112 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 171
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 172 CKVAQDEFGNSKGYGFV-HYETAEAAQNAIKHVNGMLL---NDKKVFVGHHIAKKDRQSK 227
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGK-RDFGFIHYAER 332
++KA +YVKNI +T+ E+ ++LF++ GE+T + +SGK R FGF+++
Sbjct: 228 FEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSH 287
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A AV+ + GQ L V A+ + +++ E
Sbjct: 288 DNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEE 321
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 130/285 (45%), Gaps = 38/285 (13%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + +D +EE+ RDL E G++ L +D ESG+S+GF
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIEDV 210
FV+F S + A A++ L+ K+ KG+ +L++G K+ E+E RK E
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQ-----------KLYVGRAQKKHEREEELRKQYE-- 327
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM--LNANFKLDGNTPTISWAD 268
IE S+ +G + LY N D +K+ L +++ + +
Sbjct: 328 ---AARIE------KASKYQGVN--LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFA 376
Query: 269 PKSTPDH-------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
P+ST D S + DN + KE + P GKS
Sbjct: 377 PESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKE--NKAESKKSEKKPLGKS-- 432
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KAV + + + G+ L V LA+ + ++++
Sbjct: 433 KGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQ 477
>gi|348582963|ref|XP_003477245.1| PREDICTED: dead end protein homolog 1-like [Cavia porcellus]
Length = 353
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 6/169 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEVFIG LP+D E L L + +G ++E RLM SG ++GFA+ + S+ A+
Sbjct: 54 PPPGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTF-SGLNRGFAYARYSSRRGAQ 112
Query: 163 KAIDELHSKELKGKT-IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI LH+ L+ + S K L + +P T + ++ +GPG++ +L+
Sbjct: 113 AAIATLHNHPLRPSCPLLVCRSTEKCELSVDGLPLAVTHNMLLLALQPLGPGLQEAQLLP 172
Query: 222 DP-QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
P Q P++ + + + ++ A +++ ++ +L G + W P
Sbjct: 173 SPGQAPAQ---IALLKFSSHRAAAMAKKALVEGQSRLCGEQVAVEWLKP 218
>gi|259089631|gb|ACV91671.1| AT31783p [Drosophila melanogaster]
Length = 810
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 110/216 (50%), Gaps = 25/216 (11%)
Query: 66 AEANRND----DDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
ANRN DD + T + GE E D P+ ++F+G +PK E
Sbjct: 321 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPD---------PDNIKMFVGQVPKSMDES 371
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGKT--I 178
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I
Sbjct: 372 QLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPI 431
Query: 179 RCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +F
Sbjct: 432 QMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAF 488
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNTP--TISWAD 268
V + A + + L+ N ++G T + +AD
Sbjct: 489 VTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFAD 524
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 723 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 782
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L + K+
Sbjct: 783 AIKAMNGFQVGTKRLKVQLKKPKD 806
>gi|2231301|gb|AAB61993.1| testis-specific RNP-type RNA binding protein [Drosophila
melanogaster]
Length = 808
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 25/218 (11%)
Query: 66 AEANRND----DDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
ANRN DD + T + GE E D P+ ++F+G +PK E
Sbjct: 319 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPD---------PDNIKMFVGQVPKSMDES 369
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGKT--I 178
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I
Sbjct: 370 QLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPI 429
Query: 179 RCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +F
Sbjct: 430 QMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAF 486
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNTP--TISWADPK 270
V + A + + L+ N ++G T + +AD +
Sbjct: 487 VTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFADTQ 524
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 721 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 780
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L + K+
Sbjct: 781 AIKAMNGFQVGTKRLKVQLKKPKD 804
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 140/295 (47%), Gaps = 20/295 (6%)
Query: 85 TASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES 144
+A+ G+D P N + +++G L +E L +L IG V +R+ +D +
Sbjct: 33 SAATGDDAGPTPNSAAPHPQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVT 92
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTE 200
S G+A+V++ S +KA++EL+ +KG+ R S+ L GNV KN
Sbjct: 93 RRSLGYAYVNYNSTPDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDV 152
Query: 201 DEFRKVIEDVGPGVETIELIKDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNAN-FKLD 258
K + D I K Q+ + ++G+ FV Y + A +Q + + N L+
Sbjct: 153 AIDNKALHDTFAAFGNILSCKVAQDETGSSKGYGFVHYETDEAA---QQAIKHVNGMLLN 209
Query: 259 GNTPTISWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVM 314
+ PK D + ++KA +Y+KNI + + ++ + LF+ HG+VT +
Sbjct: 210 EKKVYVGHHIPKK--DRQSKFEEMKANFTNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSI 267
Query: 315 ---PPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
P GKS R FGF+++ +A AV++ + GQ L V A+ + +++ E
Sbjct: 268 ARDPDGKS--RGFGFVNFTTHEAASAAVEELNNKDFHGQELYVGRAQKKHEREEE 320
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E+G SKG+ FV + + E A++AI +
Sbjct: 145 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ETGSSKGYGFVHYETDEAAQQAIKHV 203
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K ++I N+ + T+D+FR + E G V
Sbjct: 204 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYIKNIAPDVTDDQFRVLFEAHG-DV 262
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ + +DP ++RGF FV + + A + +++ N +F G + A K
Sbjct: 263 TSSSIARDPD--GKSRGFGFVNFTTHEAASAAVEELNNKDFH--GQELYVGRAQKKHERE 318
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
+ A+ Q LY+KN+ D+ EK++ +F G +T
Sbjct: 319 EELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDEKLRTMFTEFGPIT 366
>gi|195472345|ref|XP_002088461.1| GE18580 [Drosophila yakuba]
gi|194174562|gb|EDW88173.1| GE18580 [Drosophila yakuba]
Length = 830
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 25/218 (11%)
Query: 66 AEANRND----DDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
ANRN DD + T + GE E D P+ ++F+G +PK E
Sbjct: 329 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPD---------PDNIKMFVGQVPKSMDES 379
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGKT--I 178
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I
Sbjct: 380 QLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPI 439
Query: 179 RCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +F
Sbjct: 440 QMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAF 496
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNTP--TISWADPK 270
V + A + + L+ N ++G T + +AD +
Sbjct: 497 VTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFADTQ 534
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 743 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 802
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L + K+
Sbjct: 803 AIKAMNGFQVGTKRLKVQLKKPKD 826
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 127/269 (47%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS----AA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 VCDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ G++L A+ + +++ E
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 118/302 (39%), Gaps = 59/302 (19%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ +++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 215 ETIELIKDPQNPSRNRGFSFV------------------------LYYNNACADYSRQKM 250
++++++D N +R F FV LY A RQ
Sbjct: 219 -SVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
L F+ Q LYVKN+ D+ +K+++ F +G +T
Sbjct: 276 LKRRFE--------------QMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVIT 321
Query: 311 KV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTF 369
VM G K FGF+ ++ A KAV + + + L V LA+ + ++K T
Sbjct: 322 SAKVMTEGGHSK-GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTN 380
Query: 370 PY 371
Y
Sbjct: 381 QY 382
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGTKPLYVALAQRK 371
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++KELF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+ + V A+ + +++TE
Sbjct: 250 EMNGKELNGKQIYVGRAQKRVERQTE 275
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L++L G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A+KA+DE++ KEL GK I ++ +
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKRVERQTELKRKFEQMKQDRITRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 136/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
+++++ D +++GF FV + + A + +M N +L+G + A +
Sbjct: 219 -SVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKRVERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + +++ T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>gi|194861289|ref|XP_001969750.1| GG23776 [Drosophila erecta]
gi|190661617|gb|EDV58809.1| GG23776 [Drosophila erecta]
Length = 837
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 110/216 (50%), Gaps = 25/216 (11%)
Query: 66 AEANRND----DDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEE 121
ANRN DD + T + GE E D P+ ++F+G +PK E
Sbjct: 336 CSANRNVVAMVDDDACFRLDTDATVTYGEKEPD---------PDNIKMFVGQVPKSMDES 386
Query: 122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGKT--I 178
LR++ E G V + +++DK +G SKG FV+F ++ A KA D LH+ K L G I
Sbjct: 387 QLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPI 446
Query: 179 RCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
+ ++++NR LF+G + K E++ RK+ E G +E +++D QN +++G +F
Sbjct: 447 QMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD-QN-GQSKGCAF 503
Query: 235 VLYYNNACADYSRQKMLNANFKLDGNTP--TISWAD 268
V + A + + L+ N ++G T + +AD
Sbjct: 504 VTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFAD 539
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P G +FI LP++ ++ DL P G+V ++ DK++ SK F FVSF + + A+
Sbjct: 750 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 809
Query: 164 AIDELHSKELKGKTIRCSLSETKN 187
AI ++ ++ K ++ L + K+
Sbjct: 810 AIKAMNGFQVGTKRLKVQLKKPKD 833
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 147/343 (42%), Gaps = 44/343 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L + G + ++ D G SKG+ FV F +E A+ AID+L
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 192
Query: 169 HSKELKGKTIRC---------SLSETK-----NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + SE+ +++ N+PK T+DE +K G +
Sbjct: 193 NGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYG-DI 251
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ ++KD SR+ F FV + + A + +KM L + + A KS +
Sbjct: 252 SSAVVMKDQSGNSRS--FGFVNFVSPEAAAVAVEKM--NGISLGEDVLYVGRAQKKSDRE 307
Query: 275 HSAAAS------------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
Q LY+KN+ D+ + EK+KE+F +G VT VM +
Sbjct: 308 EELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS 367
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY----SPG-LV 376
R FGF+ Y+ AL A+K+ I + L V LA+ + +++ + SPG +
Sbjct: 368 RGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMS 427
Query: 377 PTHLPHAGY-----GGFAGTPYGSVGTGF-GVAAGFQQPMIYG 413
P P +G+ GG P+ + G G QPM YG
Sbjct: 428 PVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYG 470
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 126/273 (46%), Gaps = 16/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
PN S +++G L +E L DL + V +R+ +D + S G+A+V+F + E A +
Sbjct: 43 PN-SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASR 100
Query: 164 AIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A++ L+ ++ + IR LS K +FI N+ + + G +
Sbjct: 101 AMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG-TIL 159
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPD 274
+ ++ D R++G+ FV + A + K LN D + +
Sbjct: 160 SCKVAMDVV--GRSKGYGFVQFEKEETAQAAIDK-LNGMLLNDKQVFVGHFVRRQDRARS 216
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
S A +YVKN+P + +++K+ F ++G+++ V+ +SG R FGF+++
Sbjct: 217 ESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPE 276
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A AV+ + VL V A+ ++D++ E
Sbjct: 277 AAAVAVEKMNGISLGEDVLYVGRAQKKSDREEE 309
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 31/183 (16%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + V++ LPK+ ++++L+ GD+ +MKD +SG S+ F FV+F S E A
Sbjct: 222 PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAV 280
Query: 164 AIDELHSKELKGKTIRCSLSETK------------------------NRLFIGNVPKNWT 199
A+++++ L + ++ K + L++ N+ +
Sbjct: 281 AVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVN 340
Query: 200 EDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259
+++ +++ + G V + +++ + Q S RGF FV Y N A + ++M N K+ G
Sbjct: 341 DEKLKEMFSEYG-NVTSCKVMMNSQGLS--RGFGFVAYSNPEEALLAMKEM---NGKMIG 394
Query: 260 NTP 262
P
Sbjct: 395 RKP 397
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++KELF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+ + V A+ + +++TE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L++L G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 136/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
+++++ D +++GF FV + + A + +M N +L+G + A K
Sbjct: 219 -SVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + +++ T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 137/302 (45%), Gaps = 23/302 (7%)
Query: 78 VEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR 137
VE+ E S ED+ P + +++G L SE L D+ PIG V +R
Sbjct: 9 VEQLENLKISESEDQPSTTTSTETSP---ASLYVGELDPTVSEALLYDIFSPIGSVSSIR 65
Query: 138 LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET--------KNRL 189
+ +D + S G+A+V+F E KKAI++L+ +KG+ R S+ +
Sbjct: 66 VCRDAVTKTSLGYAYVNFNDHEAGKKAIEQLNYTPIKGRLCRIMWSQRDPALRKKGSGNI 125
Query: 190 FIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249
FI N+ + + G + + ++ D +++GF FV + + + A ++
Sbjct: 126 FIKNLHPDIDNKALFETFSVFG-NILSSKIATD--ETGKSKGFGFVHFEHESSA----KE 178
Query: 250 MLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEKIKELFQR 305
++A + N I A + + + + KA +YVKNI T+ E+ ELF +
Sbjct: 179 AIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKNINLETTDEEFNELFAK 238
Query: 306 HGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
+G V + + GK + FGF+ + + A KAV++ E Q L V A+ + ++
Sbjct: 239 YGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEELNGTEFKDQTLFVSRAQKKYERM 298
Query: 365 TE 366
E
Sbjct: 299 QE 300
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 101/388 (26%), Positives = 167/388 (43%), Gaps = 61/388 (15%)
Query: 101 ALPPNGS-EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
AL GS +FI L D + L + G++ ++ D E+G+SKGF FV F +
Sbjct: 116 ALRKKGSGNIFIKNLHPDIDNKALFETFSVFGNILSSKIATD-ETGKSKGFGFVHFEHES 174
Query: 160 FAKKAIDELHSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRK 205
AK+AID L+ L G+ I + L ETK +++ N+ T++EF +
Sbjct: 175 SAKEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKNINLETTDEEFNE 234
Query: 206 VIEDVGPGVET-IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264
+ G + + +E +D + +GF FV + + A + +++ FK T +
Sbjct: 235 LFAKYGNVLSSSLEKTED----GKLKGFGFVDFEKHEDAAKAVEELNGTEFK--DQTLFV 288
Query: 265 SWADPK------------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV 312
S A K ++ A Q L+VKN+ D+ EK+KE F +G +T V
Sbjct: 289 SRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFVKNLDDSIDDEKLKEEFAPYGTITSV 348
Query: 313 -VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
VM + FGF+ ++ A KA+ + + + G+ L V +A+ + ++++
Sbjct: 349 RVMRTDNGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ----- 403
Query: 372 SPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDG 431
+ + + + G+ F PM YG P P G VP P+
Sbjct: 404 ----LAQQIQARTQMRYQQATAAAAAAAAGIPGQFMPPMFYGVMP-PRG---VPFNGPNP 455
Query: 432 QIGYVLQQPGVQMPPPRPRRVDRSNGPG 459
Q Q GV PP+ R NGPG
Sbjct: 456 Q-----QMNGV---PPQQFR----NGPG 471
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 9/149 (6%)
Query: 39 GDGNFEENDDDEEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQ 98
G +FE+++D + G KDQ+ +R ++E +K + ++ K+
Sbjct: 259 GFVDFEKHEDAAKAVEELNGTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKY-- 316
Query: 99 LLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK 158
G +F+ L +E L++ P G + VR+M+ ++G+SKGF FV F +
Sbjct: 317 ------QGVNLFVKNLDDSIDDEKLKEEFAPYGTITSVRVMRT-DNGKSKGFGFVCFSTP 369
Query: 159 EFAKKAIDELHSKELKGKTIRCSLSETKN 187
E A KAI E + + + GK + ++++ K+
Sbjct: 370 EEATKAITEKNQQIVAGKPLYVAIAQRKD 398
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSQKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++KELF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+ + V A+ + +++TE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +K++ A+L A + V+I +D +E L++L G V++M D ESG+SKG
Sbjct: 174 KSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 136/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
+++++ D +++GF FV + + A + +M N +L+G + A K
Sbjct: 219 -SVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + +++ T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>gi|225717924|gb|ACO14808.1| Heterogeneous nuclear ribonucleoprotein Q [Caligus clemensi]
Length = 373
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
+P NG EVF G +P+D E++L L E G ++ +RLM D +G ++G+AF++F K A
Sbjct: 251 VPGNGCEVFCGKIPRDMYEDELIPLFEKCGTIWGLRLMMDLMTGLNRGYAFITFTDKGAA 310
Query: 162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEF 203
++A+ +L+ EL+ G+ I ++S +RLFIGN+PK ++
Sbjct: 311 QEAVKKLNEHELRGGRRIGVTISFNNHRLFIGNIPKGCDREQL 353
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 138/305 (45%), Gaps = 38/305 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K+ + + D G++ ++ +D E G SKG+ FV F ++E A +I+++
Sbjct: 92 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-EKGNSKGYGFVHFETEESANTSIEKV 150
Query: 169 HSKELKGKTIRC-----------SLSETKNRLFIGNVPKNW----TEDEFRKVIEDVGPG 213
+ L K + L E K +LF KN+ T++ +++ E G
Sbjct: 151 NGMLLNAKKVFVGRFIPRKEREKELGE-KAKLFTNVYVKNFGDELTDESLKEMFEKYGTI 209
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-- 271
+IK+ +++RGF FV + N A+ + Q+ LN DG + A K+
Sbjct: 210 TSHRVMIKE----NKSRGFGFVAFENPESAEVAVQE-LNGKELGDGKVLYVGRAQKKNER 264
Query: 272 TPDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKS 319
+ Q+K LYVKN+ D+ E++++ F G +T KV++ G+S
Sbjct: 265 QMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVMLEEGRS 324
Query: 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTH 379
+ FGF+ ++ A KAV + + + L V LA+ + D+K Y +
Sbjct: 325 --KGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRMANMR 382
Query: 380 LPHAG 384
+ H G
Sbjct: 383 MQHMG 387
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 132/270 (48%), Gaps = 14/270 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 2 ASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ IR S+ L +GNV KN ++ K + D I K
Sbjct: 62 TMNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 121
Query: 223 PQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
Q+ N +G+ FV + A+ S +K+ L+ + P+ + A
Sbjct: 122 AQDEKGNSKGYGFVHFETEESANTSIEKV--NGMLLNAKKVFVGRFIPRKEREKELGEKA 179
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALK 337
+YVKN D + E +KE+F+++G +T +V++ KS R FGF+ + SA
Sbjct: 180 KLFTNVYVKNFGDELTDESLKEMFEKYGTITSHRVMIKENKS--RGFGFVAFENPESAEV 237
Query: 338 AVKDTEKYEI-DGQVLEVVLAKPQTDKKTE 366
AV++ E+ DG+VL V A+ + +++ E
Sbjct: 238 AVQELNGKELGDGKVLYVGRAQKKNERQME 267
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F + E A KA+
Sbjct: 285 GVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVM--LEEGRSKGFGFVCFSAAEEATKAV 342
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 343 TEMNGRIVGSKPLYVALAQRK 363
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 147/343 (42%), Gaps = 44/343 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L + G + ++ D G SKG+ FV F +E A+ AID+L
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 192
Query: 169 HSKELKGKTIRC---------SLSETK-----NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + SE+ +++ N+PK T+DE +K G +
Sbjct: 193 NGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYG-DI 251
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ ++KD SR+ F FV + + A + +KM L + + A KS +
Sbjct: 252 SSAVVMKDQSGNSRS--FGFVNFVSPEAAAVAVEKM--NGISLGEDVLYVGRAQKKSDRE 307
Query: 275 HSAAAS------------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
Q LY+KN+ D+ + EK+KE+F +G VT VM +
Sbjct: 308 EELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS 367
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY----SPG-LV 376
R FGF+ Y+ AL A+K+ I + L V LA+ + +++ + SPG +
Sbjct: 368 RGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMS 427
Query: 377 PTHLPHAGY-----GGFAGTPYGSVGTGF-GVAAGFQQPMIYG 413
P P +G+ GG P+ + G G QPM YG
Sbjct: 428 PVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYG 470
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 126/273 (46%), Gaps = 16/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
PN S +++G L +E L DL + V +R+ +D + S G+A+V+F + E A +
Sbjct: 43 PN-SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASR 100
Query: 164 AIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A++ L+ ++ + IR LS K +FI N+ + + G +
Sbjct: 101 AMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG-TIL 159
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPD 274
+ ++ D R++G+ FV + A + K LN D + +
Sbjct: 160 SCKVAMDVV--GRSKGYGFVQFEKEETAQAAIDK-LNGMLLNDKQVFVGHFVRRQDRARS 216
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
S A +YVKN+P + +++K+ F ++G+++ V+ +SG R FGF+++
Sbjct: 217 ESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPE 276
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A AV+ + VL V A+ ++D++ E
Sbjct: 277 AAAVAVEKMNGISLGEDVLYVGRAQKKSDREEE 309
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 31/183 (16%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + V++ LPK+ ++++L+ GD+ +MKD +SG S+ F FV+F S E A
Sbjct: 222 PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAV 280
Query: 164 AIDELHSKELKGKTIRCSLSETK------------------------NRLFIGNVPKNWT 199
A+++++ L + ++ K + L++ N+ +
Sbjct: 281 AVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVN 340
Query: 200 EDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259
+++ +++ + G V + +++ + Q S RGF FV Y N A + ++M N K+ G
Sbjct: 341 DEKLKEMFSEYG-NVTSCKVMMNSQGLS--RGFGFVAYSNPEEALLAMKEM---NGKMIG 394
Query: 260 NTP 262
P
Sbjct: 395 RKP 397
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 98/377 (25%), Positives = 165/377 (43%), Gaps = 53/377 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ ++ D SG+SKG+ FV + ++E A+KA+ +L
Sbjct: 130 IFIKNLDKSIDHKALHDTFSVFGNIISCKVAVD-SSGQSKGYGFVQYETEESAQKAMGQL 188
Query: 169 HSKELKGKTI-------RCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVET 216
+ L K + R T N+ +++ N+ ++ T+D+ + + + G + +
Sbjct: 189 NGMLLNDKQVYVGPFLRRQERDSTGNKTIFTNVYVKNLAESTTDDDLKNIFGEFGK-ITS 247
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKS---- 271
++KD + + +GF FV + N AD + + + + N K D + A KS
Sbjct: 248 AVVMKDGEG--KPKGFGFVNFEN---ADDAAKAVESLNGKTFDDKEWFVGRAQKKSEREM 302
Query: 272 --------TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKR 322
+ +A Q LYVKN+ D+ S EK+KELF +G VT VM R
Sbjct: 303 ELKVQYEQSLKEAADKFQSSNLYVKNLDDSVSDEKLKELFTPYGTVTSCKVMRDPNGMSR 362
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPH 382
GF+ ++ A KA+ + I+ + L V +A+ + D++ +S + P +P
Sbjct: 363 GSGFVAFSTPEEATKAMSEMSGKMIENKPLYVAVAQRKEDRRARLQAQFSQ-MRPVAMP- 420
Query: 383 AGYGGFAGTPYG-SVGTGFGVAAGFQQPMIYGRGP--MPSG-------MHMVPMVLPDGQ 432
P G + G QPM YG+ P M S +VP + P G
Sbjct: 421 --------PPVGPRMPIYPPGGPGIGQPMFYGQAPPTMISSQPGFGYQQQLVPGMRPGGA 472
Query: 433 IGYVLQQPGVQMPPPRP 449
+ P VQ RP
Sbjct: 473 PMHNFFMPMVQQGQQRP 489
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 127/281 (45%), Gaps = 20/281 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L + ++ L D +G V VR+ +D + S G+ +V+F S + A +AI
Sbjct: 40 TSLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARAIQ 99
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
EL+ L GK +R S +FI N+ K+ G + + +
Sbjct: 100 ELNYIPLNGKPVRVMYSHRDPSVRRSGAGNIFIKNLDKSIDHKALHDTFSVFG-NIISCK 158
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT---PTISWADPKSTPDH 275
+ D + +++G+ FV Y A + + LN D P + + ST +
Sbjct: 159 VAVD--SSGQSKGYGFVQYETEESAQKAMGQ-LNGMLLNDKQVYVGPFLRRQERDSTGNK 215
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSS 334
+ + +YVKN+ ++T+ + +K +F G++T VVM G+ + FGF+++
Sbjct: 216 TIFTN----VYVKNLAESTTDDDLKNIFGEFGKITSAVVMKDGEGKPKGFGFVNFENADD 271
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGL 375
A KAV+ D + V A+ +++++ E Y L
Sbjct: 272 AAKAVESLNGKTFDDKEWFVGRAQKKSEREMELKVQYEQSL 312
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 9/145 (6%)
Query: 42 NFEENDDDEEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLA 101
NFE DD + S G + D+ R + E + ++ DK
Sbjct: 265 NFENADDAAKAVESLNGKTFDDKEWFVGRAQKKSEREMELKVQYEQSLKEAADKF----- 319
Query: 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
S +++ L S+E L++L P G V ++M+D +G S+G FV+F + E A
Sbjct: 320 ---QSSNLYVKNLDDSVSDEKLKELFTPYGTVTSCKVMRDP-NGMSRGSGFVAFSTPEEA 375
Query: 162 KKAIDELHSKELKGKTIRCSLSETK 186
KA+ E+ K ++ K + ++++ K
Sbjct: 376 TKAMSEMSGKMIENKPLYVAVAQRK 400
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 127/269 (47%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS----AA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ G++L A+ + +++ E
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 132/274 (48%), Gaps = 15/274 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 112 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 171
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 172 CKVAQDEFGNSKGYGFV-HYETAEAAQNAIKHVNGMLL---NDKKVFVGHHIAKKDRQSK 227
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGK-RDFGFIHYAER 332
++KA +YVKNI +T+ E+ ++LF++ GE+T + +SGK R FGF+++
Sbjct: 228 FEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSH 287
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A AV+ + GQ L V A+ + +++ E
Sbjct: 288 DNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEE 321
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 130/285 (45%), Gaps = 38/285 (13%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + +D +EE+ RDL E G++ L +D ESG+S+GF
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIEDV 210
FV+F S + A A++ L+ K+ KG+ +L++G K+ E+E RK E
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQ-----------KLYVGRAQKKHEREEELRKQYE-- 327
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM--LNANFKLDGNTPTISWAD 268
IE S+ +G + LY N D +K+ L +++ + +
Sbjct: 328 ---AARIE------KASKYQGVN--LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFA 376
Query: 269 PKSTPDH-------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
P+ST D S + DN + KE + P GKS
Sbjct: 377 PESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKE--NKAESKKSEKKPLGKS-- 432
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KAV + + + G+ L V LA+ + ++++
Sbjct: 433 KGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQ 477
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++KELF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+ + V A+ + +++TE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L++L G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 136/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
+++++ D +++GF FV + + A + +M N +L+G + A K
Sbjct: 219 -SVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + +++ T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 130/273 (47%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 51 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 111 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 170
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + S D +
Sbjct: 171 CKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 226
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +Y+KN+ ++ +++F++ GE+T + + GK R FGF++++
Sbjct: 227 FEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHE 286
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV++ EI Q L V A+ + +++ E
Sbjct: 287 SAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEE 319
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 28/226 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K ++I N+ +DEFRK+ E G +
Sbjct: 203 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGE-I 261
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD----GNTPTISWADPK 270
+ L +D + ++RGF FV + + A + ++M + + G + +
Sbjct: 262 TSATLSRDQE--GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEE 319
Query: 271 STPDHSAA----ASQVKA--LYVKNIPDNTSTEKIKELFQRHGEVT 310
+ AA AS+ + LYVKN+ D+ EK++ELF +G +T
Sbjct: 320 LRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTIT 365
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 135 EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
E + K G+SKGF FV F S + A KA+ E++ + + GK + +L++ K+
Sbjct: 422 EAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKD 474
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 127/269 (47%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS----AA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ G++L A+ + +++ E
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 127/295 (43%), Gaps = 37/295 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTP 273
++++++D N +R F FV N + +++ +++ N K + G A +
Sbjct: 219 -SVKVMRD--NSGHSRCFGFV---NFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVER 272
Query: 274 DHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
+ Q+K LYVKN+ D+ +K+++ F +G +T VM G
Sbjct: 273 QNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGL 375
K FGF+ ++ A KAV + + + L V LA+ + ++K T Y L
Sbjct: 333 K-GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVGTKPLYVALAQRK 371
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 130/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L DA+E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++K+LF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+ + V A+ + +++TE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L+DL G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ ++ + + GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
+++++ D +++GF FV + + A + +M N +L+G + A K
Sbjct: 219 -SVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + +++ T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 128/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARARE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN D+ EK++++F ++G + + SGK R FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDDSGKSRGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+ + V A+ + +++ E
Sbjct: 250 EMNGKEMNGKPIYVGRAQKKVERQAE 275
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I D EE LRD+ G+ +R+M D +SG+S+G
Sbjct: 174 KSRKEREAELGARAREFTNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTD-DSGKSRG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
F FVSF E A+KA+DE++ KE+ GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKEMNGKPIYVGRAQKK 269
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 134/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + E++ R V G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGDDMDEEKLRDVFNKYGNAM 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
+I ++ D + ++RGF FV + + A + +M N +++G + A K
Sbjct: 219 -SIRVMTD--DSGKSRGFGFVSFERHEDAQKAVDEM-NGK-EMNGKPIYVGRAQKKVERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K LYVKN+ D E++++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLEGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + +++ T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--LEGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++KELF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+ + V A+ + +++TE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L++L G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 136/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
+++++ D +++GF FV + + A + +M N +L+G + A K
Sbjct: 219 -SVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + +++ T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 168/395 (42%), Gaps = 73/395 (18%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
+ +FI L K + L D G + R++ D ++G SKG+ FV F +E A+ AI
Sbjct: 113 AANIFIKNLEKSIDNKALHDTFSAFGTILSCRVVMD-DAGNSKGYGFVQFEKEESAQIAI 171
Query: 166 DELHSKELKGKTIRCS-----------LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
++++ + + + + S+ N +++ N+ + T+++ RKV GP +
Sbjct: 172 EKVNGMLINDRQVSVAPFIRKQERDMASSKNFNNVYVKNLAEATTDEDLRKVFAGFGP-I 230
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL-DGNTPTISWADPKSTP 273
+ +++D S+ F FV + N D + + N N KL + + A KS
Sbjct: 231 SSAVVMRDADGKSK--CFGFVNFEN---VDDAANAVENLNGKLINEKEWYVGRAQKKSER 285
Query: 274 DHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
+ A QV+ LY+KNI D+ EK++ELF G VT VM +
Sbjct: 286 EAELKAKFEQVRKEKEEKFQGVNLYLKNIDDSIDDEKLRELFAVFGTVTSCKVMKSPQGQ 345
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKT--EGTFP-------- 370
GF+ ++ A++AV D + + L V LA+ + +++ + F
Sbjct: 346 SMGSGFVTFSAPEEAMQAVNDMNGKMVGSKPLYVALAQRKEERRARLQAQFAQMQIVAPN 405
Query: 371 -----------YSPGLVPTHLPH-AGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMP 418
Y PG P + H YG A S GF G+QQPM+ P
Sbjct: 406 APPMAPNPPSMYHPG--PQGMGHQMFYGQPAPGLLPSQANGF----GYQQPMVPTMRPTS 459
Query: 419 SGM--HMVPMVLPDGQIGYVLQQPGVQMPPPRPRR 451
+G+ + +P +Q+PG Q+ P RR
Sbjct: 460 AGVPNYFMP-----------VQRPGQQIQRPVNRR 483
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 132/287 (45%), Gaps = 21/287 (7%)
Query: 95 KHAQLLALPPNGSE------VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESK 148
+ A +A P +GS +++G L D SE +L ++ IG V +R+ +D + +S
Sbjct: 8 QQAPTIATPISGSSPYVAPSLYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKKSL 67
Query: 149 GFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTE 200
G+A+V++ + + A +A++ L+ +KGK IR S +FI N+ K+
Sbjct: 68 GYAYVNYGTHQDASQALELLNFTLVKGKPIRIMYSHRDPSIRKSGAANIFIKNLEKSIDN 127
Query: 201 DEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN 260
G + ++ D N ++G+ FV + A + +K +N D
Sbjct: 128 KALHDTFSAFGTILSCRVVMDDAGN---SKGYGFVQFEKEESAQIAIEK-VNGMLINDRQ 183
Query: 261 TPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG 320
+ + A++ +YVKN+ + T+ E ++++F G ++ V+ G
Sbjct: 184 VSVAPFI--RKQERDMASSKNFNNVYVKNLAEATTDEDLRKVFAGFGPISSAVVMRDADG 241
Query: 321 K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
K + FGF+++ A AV++ I+ + V A+ +++++ E
Sbjct: 242 KSKCFGFVNFENVDDAANAVENLNGKLINEKEWYVGRAQKKSEREAE 288
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++KELF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+ + V A+ + +++TE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L++L G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
+++++ D +++GF FV + + A + +M +L+G + A K
Sbjct: 219 -SVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEMNGK--ELNGKQIYVGRAQKKVERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + +++ T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 147/343 (42%), Gaps = 44/343 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L + G + ++ D G SKG+ FV F +E A+ AID+L
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 169 HSKELKGKTIRC---------SLSETK-----NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + SE+ +++ N+PK T+DE +K G +
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYG-DI 265
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ ++KD SR+ F FV + + A + +KM L + + A KS +
Sbjct: 266 SSAVVMKDQSGNSRS--FGFVNFVSPEAAAVAVEKM--NGISLGEDVLYVGRAQKKSDRE 321
Query: 275 HSAAAS------------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
Q LY+KN+ D+ + EK+KE+F +G VT VM +
Sbjct: 322 EELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS 381
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY----SPG-LV 376
R FGF+ Y+ AL A+K+ I + L V LA+ + +++ + SPG +
Sbjct: 382 RGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMS 441
Query: 377 PTHLPHAGY-----GGFAGTPYGSVGTGF-GVAAGFQQPMIYG 413
P P +G+ GG P+ + G G QPM YG
Sbjct: 442 PVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYG 484
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 126/273 (46%), Gaps = 16/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
PN S +++G L +E L DL + V +R+ +D + S G+A+V+F + E A +
Sbjct: 57 PN-SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASR 114
Query: 164 AIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A++ L+ ++ + IR LS K +FI N+ + + G +
Sbjct: 115 AMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG-TIL 173
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPD 274
+ ++ D R++G+ FV + A + K LN D + +
Sbjct: 174 SCKVAMDVV--GRSKGYGFVQFEKEETAQAAIDK-LNGMLLNDKQVFVGHFVRRQDRARS 230
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERS 333
S A +YVKN+P + +++K+ F ++G+++ V+ +SG R FGF+++
Sbjct: 231 ESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPE 290
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A AV+ + VL V A+ ++D++ E
Sbjct: 291 AAAVAVEKMNGISLGEDVLYVGRAQKKSDREEE 323
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 31/183 (16%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + V++ LPK+ ++++L+ GD+ +MKD +SG S+ F FV+F S E A
Sbjct: 236 PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAV 294
Query: 164 AIDELHSKELKGKTIRCSLSETK------------------------NRLFIGNVPKNWT 199
A+++++ L + ++ K + L++ N+ +
Sbjct: 295 AVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVN 354
Query: 200 EDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259
+++ +++ + G V + +++ + Q S RGF FV Y N A + ++M N K+ G
Sbjct: 355 DEKLKEMFSEYG-NVTSCKVMMNSQGLS--RGFGFVAYSNPEEALLAMKEM---NGKMIG 408
Query: 260 NTP 262
P
Sbjct: 409 RKP 411
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 129/273 (47%), Gaps = 20/273 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +E L ++ PIG V +R+ +D S +S G+A+V++ E +KAI+
Sbjct: 52 ASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIE 111
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
EL+ ++G+ R S+ +FI N+ G + + +
Sbjct: 112 ELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGK-ILSCK 170
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ D S+ GF ++Y A A + + +N + N + S D +
Sbjct: 171 VATDDMGQSKCFGF---VHYETAEAAEAAIENVNG---MLLNDREVFVGKHISKKDRESK 224
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +YVKNI S E +K+LF +G +T + + GK + FGF++Y
Sbjct: 225 FEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHE 284
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A+KAV++ EI+GQ + V A+ + ++ E
Sbjct: 285 AAVKAVEELNDKEINGQKIYVGRAQKKRERMEE 317
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 131/285 (45%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D + G+SK F FV + + E A+ AI+ +
Sbjct: 142 IFIKNLHPAIDNKALHDTFSTFGKILSCKVATD-DMGQSKCFGFVHYETAEAAEAAIENV 200
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK I E+K +++ N+ ++E++ +K+ G +
Sbjct: 201 NGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYG-AI 259
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD + S+ GF FV Y + A + +++ + +++G + A K
Sbjct: 260 TSIYLEKDAEGKSK--GFGFVNYEGHEAAVKAVEELNDK--EINGQKIYVGRAQKKRERM 315
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+T + Q L++KN+ D +EK++E F+ G +T + ++GK
Sbjct: 316 EELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKS 375
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + G+ L V LA+ + ++++
Sbjct: 376 KGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDVRRSQ 420
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L E L + +P G + R+M D E+G+SKGF FV F S E A KAI
Sbjct: 335 GVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVD-ETGKSKGFGFVCFSSPEEATKAI 393
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + GK + +L++ K+
Sbjct: 394 TEMNQRMFFGKPLYVALAQRKD 415
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++KELF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+ + V A+ + +++TE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L++L G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 136/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
+++++ D +++GF FV + + A + +M N +L+G + A K
Sbjct: 219 -SVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + +++ T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 129/272 (47%), Gaps = 15/272 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
PN S +++G L + +E L DL + V +R+ +D+ S G+A+V+F + + A
Sbjct: 21 PN-SSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAAN 79
Query: 164 AIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A++ L+ L GK IR +S +FI N+ + ++ GP V
Sbjct: 80 AMELLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFASFGP-VL 138
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
+ ++ D N +++G+ FV + N A + + LN D + + +
Sbjct: 139 SCKVAVD--NNGQSKGYGFVQFENEEAAQSAINR-LNGMLINDKEVFVGRFVRHQERIE- 194
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ + + +YVKN+ + TS E +K+ F +G +T ++ +SGK + FGF+++ S
Sbjct: 195 ATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDS 254
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A AV+ + +V V A+ + +++ E
Sbjct: 255 AAAAVEKLNGTTFNDKVWYVGRAQRKGEREAE 286
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 80/359 (22%), Positives = 147/359 (40%), Gaps = 46/359 (12%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ VFI L + L++ G V ++ D +G+SKG+ FV F ++E A+ AI+
Sbjct: 111 ANVFIKNLDTSIDNKALQETFASFGPVLSCKVAVDN-NGQSKGYGFVQFENEEAAQSAIN 169
Query: 167 ELHSKELKGK------------TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
L+ + K I + S +++ N+ + ++++ +K + G
Sbjct: 170 RLNGMLINDKEVFVGRFVRHQERIEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSIT 229
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
I ++KD +++GF FV + + A + +K+ F + + A K +
Sbjct: 230 SAI-VMKD--QSGKSKGFGFVNFQSPDSAAAAVEKLNGTTF--NDKVWYVGRAQRKGERE 284
Query: 275 HSAAAS----------QVKA--LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
A ++KA LY+KN+ D EK+KELF G +T VM +
Sbjct: 285 AELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLS 344
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ GF+ ++ A +A+ I + L V +A+ + ++K + H
Sbjct: 345 KGSGFVAFSTPEEASRALNGMNGKMIGKKPLYVAVAQRREERKAR---------LQAHFT 395
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRG------PMPSGMHMVPMVLPDGQIG 434
G + P G G G Q + +G+G P P+G +LP + G
Sbjct: 396 QIQAPGLSPMPSGLPGYHPGAPRLAPQQLFFGQGTAGMMPPQPAGYGFQQQLLPGMRAG 454
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 129/273 (47%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 47 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 106
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 107 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 166
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + S D +
Sbjct: 167 CKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 222
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +YVKNI + E+ +ELF ++G++T + SGK R FGF++Y +
Sbjct: 223 FEEMKANFTNVYVKNIDPEVTDEEFRELFGKYGDITSATISRDDSGKSRGFGFVNYVDHQ 282
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A AV + + Q L V A+ + +++ E
Sbjct: 283 NAQSAVDELNDKDFHSQKLYVGRAQKKHEREEE 315
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 96/226 (42%), Gaps = 28/226 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 140 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 198
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K +++ N+ T++EFR++ G +
Sbjct: 199 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYVKNIDPEVTDEEFRELFGKYG-DI 257
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACA----------DYSRQKMLNANFKLDGNTPTI 264
+ + +D + ++RGF FV Y ++ A D+ QK+ +
Sbjct: 258 TSATISRD--DSGKSRGFGFVNYVDHQNAQSAVDELNDKDFHSQKLYVGRAQKKHEREEE 315
Query: 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
++ A+ Q LYVKN+ D+ +K++ELF G +T
Sbjct: 316 LRRQYEAARLEKASKYQGVNLYVKNLTDDVDDDKLRELFSPFGTIT 361
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 47/129 (36%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD-------------KES-------- 144
G +++ L D ++ LR+L P G + ++M+D KE+
Sbjct: 333 GVNLYVKNLTDDVDDDKLRELFSPFGTITSAKVMRDTVGVSSDSDKEEGKEASEKEGEEA 392
Query: 145 --------------------------GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178
G+SKGF FV F S + A KA+ E++ + + GK +
Sbjct: 393 SEKEETKVKAEDEEKTETKKPEKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPL 452
Query: 179 RCSLSETKN 187
+L++ K+
Sbjct: 453 YVALAQRKD 461
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,084,729,106
Number of Sequences: 23463169
Number of extensions: 460439565
Number of successful extensions: 3659662
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 22878
Number of HSP's successfully gapped in prelim test: 19944
Number of HSP's that attempted gapping in prelim test: 2955171
Number of HSP's gapped (non-prelim): 402284
length of query: 482
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 336
effective length of database: 8,933,572,693
effective search space: 3001680424848
effective search space used: 3001680424848
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 79 (35.0 bits)