BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011574
(482 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 175 bits (444), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 175 bits (443), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 246
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 247 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 300
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 301 MNGKDLEGENIEIVFAKPPDQKRKE 325
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 175 bits (443), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1
Length = 587
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 152/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1
Length = 594
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 152/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>sp|Q5YD48|A1CF_MOUSE APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=2
Length = 595
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+RLM D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDF-NGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>sp|Q923K9|A1CF_RAT APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1
SV=1
Length = 594
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>sp|Q91WT8|RBM47_MOUSE RNA-binding protein 47 OS=Mus musculus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 152 bits (384), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 145/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>sp|Q66H68|RBM47_RAT RNA-binding protein 47 OS=Rattus norvegicus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 152 bits (384), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 144/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E IK F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEETIKRSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>sp|Q9XSR3|RBM47_CANFA RNA-binding protein 47 OS=Canis familiaris GN=RBM47 PE=2 SV=1
Length = 592
Score = 152 bits (383), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 147/257 (57%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV++ K AK+A+
Sbjct: 72 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAKRAV 130
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 131 RELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 190
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 191 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 249
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A+ A+
Sbjct: 250 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVLAMNSL 303
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 304 NGTELEGSCLEVTLAKP 320
>sp|Q5R5P4|RBM47_PONAB RNA-binding protein 47 OS=Pongo abelii GN=RBM47 PE=2 SV=2
Length = 593
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>sp|A0AV96|RBM47_HUMAN RNA-binding protein 47 OS=Homo sapiens GN=RBM47 PE=1 SV=2
Length = 593
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 146/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>sp|P86049|RBM46_MOUSE Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1
Length = 533
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFSKFKPGAVERV------KKLRDYAFVHFFHREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>sp|Q8TBY0|RBM46_HUMAN Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1
Length = 533
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>sp|Q4R2Z0|RBM46_MACFA Probable RNA-binding protein 46 OS=Macaca fascicularis GN=RBM46
PE=2 SV=2
Length = 485
Score = 149 bits (376), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>sp|Q0P4R6|RBM46_XENTR Probable RNA-binding protein 46 OS=Xenopus tropicalis GN=rbm46 PE=2
SV=1
Length = 534
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 147/256 (57%), Gaps = 11/256 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E+ L L G ++E RLM + SGE++G+AFV + +KE A AI
Sbjct: 61 CEVFVGKIPRDMYEDKLVPLFARAGKIYEFRLMME-FSGENRGYAFVMYTNKEEALLAIR 119
Query: 167 ELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E+ +GK I +S RLFIG++P+ ++E + ++ V GV + + +
Sbjct: 120 MLNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEEILEEMKKVTEGVMDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV+Y ++ A +R+K++ F+L G+T ++WA P+ D +VK L
Sbjct: 180 KTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGHTIKVAWASPEKEVDEE-TMQKVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F R+ G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMMSTTEETIKAEFNRYKPGVVERV------KKIRDYAFVHFFRRDYAIAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKP 359
IDG +EV LAKP
Sbjct: 293 GRLIDGARIEVTLAKP 308
>sp|Q08BH5|RBM46_DANRE Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1
Length = 510
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 149/257 (57%), Gaps = 11/257 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + ++E A++AI
Sbjct: 46 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMMEF-SGENRGYAFVMYTTREKAQRAIQL 104
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
L + E++ GK I +S RLFIG++PK+ ++E ++ + V GV + + +
Sbjct: 105 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYPSAVDR 164
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF+FV Y ++ A +R+K++ F+L G+T + WA+P+ D +V+ LY
Sbjct: 165 MKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEE-TMQRVRVLY 223
Query: 287 VKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344
V+N+ +T+ E ++ F + G V +V D+ FIH+ R AL A++
Sbjct: 224 VRNLMLSTTEETLRSEFSQLKPGSVERV------KKLTDYAFIHFYNREDALTALESMNG 277
Query: 345 YEIDGQVLEVVLAKPQT 361
IDG +EV LAKP +
Sbjct: 278 KVIDGSPIEVTLAKPAS 294
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 143/302 (47%), Gaps = 28/302 (9%)
Query: 78 VEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR 137
+EE+ PT + E K + +G+ +++G L SE L D+ PIG V +R
Sbjct: 17 IEEQTAPTTTESETPK--------VETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIR 68
Query: 138 LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET--------KNRL 189
+ +D + S G+A+V+F E KAI++L+ +KGK R S+ +
Sbjct: 69 VCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNI 128
Query: 190 FIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249
+I N+ + G + + ++ D S RGF FV + N + A +
Sbjct: 129 YIKNLHPAIDNKSLHETFSTFG-NILSCKVATDENGVS--RGFGFVHFENESDA----RD 181
Query: 250 MLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEKIKELFQR 305
+ A + N + A S D + +VKA +YVKNI TS E+ +ELF +
Sbjct: 182 AIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGK 241
Query: 306 HGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
+G++T V+ GK R FGF+++ + ++A KAV + + E GQ L V A+ + ++
Sbjct: 242 YGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERL 301
Query: 365 TE 366
E
Sbjct: 302 QE 303
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 121/277 (43%), Gaps = 33/277 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
++I L + L + G++ ++ D E+G S+GF FV F ++ A+ AI+ +
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-ENGVSRGFGFVHFENESDARDAIEAV 186
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ + + +L +K +++ N+ + +++EF ++ G +
Sbjct: 187 DGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGK-I 245
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L KD + + RGF FV + ++A A + ++ FK G + A K
Sbjct: 246 TSAVLEKDSE--GKLRGFGFVNFEDHAAAAKAVDELNELEFK--GQKLYVGRAQKKYERL 301
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+ A Q L+VKN+ D+ EK+KE F G +T VM
Sbjct: 302 QELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
R FGF+ ++ A KA+ + + + G+ L V +A+
Sbjct: 362 RGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L++ P G + ++M+D E+G S+GF FV F + E A KAI
Sbjct: 321 GVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEATKAI 379
Query: 166 DELHSKELKGKTIRCSLSETK 186
E + + + GK + ++++ K
Sbjct: 380 TEKNQQIVAGKPLYVAIAQRK 400
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 130/272 (47%), Gaps = 14/272 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S E +KA
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 165 IDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
++EL+ +KGK R S+ + GNV KN K + D I
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 165
Query: 221 KDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K Q+ N +G+ FV +Y A A + K +N L+ + PK + +
Sbjct: 166 KVAQDELGNSKGYGFV-HYETAEAANNAIKHVNGML-LNEKKVFVGHHIPKK--ERMSKF 221
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
++KA +YVKNI + + E +ELF++HG++T + GK R FGF++Y +
Sbjct: 222 EEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEA 281
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A AV E GQ L V A+ + +++ E
Sbjct: 282 AAVAVDHLNDIEFKGQKLYVGRAQKKHEREEE 313
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+K++ ++ + N + +++ + D ++ED R+L E GD+ + +D + G+S+GF
Sbjct: 214 KKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARD-DQGKSRGFG 272
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIE 208
FV++ E A A+D L+ E KG+ +L++G K+ E+E RK E
Sbjct: 273 FVNYIRHEAAAVAVDHLNDIEFKGQ-----------KLYVGRAQKKHEREEELRKQYE 319
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
G+SKGF FV F + + A KA+ E++ K ++GK + +L++ K+
Sbjct: 422 GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKD 464
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 131/273 (47%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 45 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 104
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 105 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILS 164
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + S D +
Sbjct: 165 CKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 220
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +Y+KN+ S E+ +++F++ GE+T + + GK R FGF++Y+
Sbjct: 221 FEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHD 280
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV + E+ GQ L V A+ + +++ E
Sbjct: 281 SAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEE 313
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 196
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K ++I N+ + +E+EFR++ E G +
Sbjct: 197 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGE-I 255
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L +D + ++RGF FV Y + A + +M + K G + A K +
Sbjct: 256 TSATLSRDQE--GKSRGFGFVNYSTHDSAQAAVDEMNDKEVK--GQKLYVGRAQKKHERE 311
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
A+ Q LYVKN+ D+ EK++E+F +G +T
Sbjct: 312 EELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTIT 359
Score = 40.0 bits (92), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 50/132 (37%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD------------------------ 141
G +++ L D +E LR++ P G + ++M+D
Sbjct: 331 GVNLYVKNLTDDIDDEKLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKP 390
Query: 142 --------------------------KESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175
K G+SKGF FV F S + A KA+ E++ + + G
Sbjct: 391 EAAEKTEEAAKESGDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMING 450
Query: 176 KTIRCSLSETKN 187
K + +L++ K+
Sbjct: 451 KPLYVALAQRKD 462
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 130/269 (48%), Gaps = 14/269 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
+ + +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E +KA
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 165 IDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
I++L+ +KG+ R S+ L GN+ KN D K + D I
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 221 KDPQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K + + +++GF FV + A ++ ++A + N I A S + +
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAA----KEAIDALNGMLLNGQEIYVAPHLSRKERDSQL 211
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ KA LYVKNI T+ E+ +ELF + G + + GK + FGF++Y +
Sbjct: 212 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHED 271
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363
A+KAV+ E++G+ L V A+ + ++
Sbjct: 272 AVKAVEALNDSELNGEKLYVGRAQKKNER 300
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 137/285 (48%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D GD+ ++ D E+G+SKGF FV F + AK+AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK L++ N+ T+++F+++ GP V
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD + +GF FV Y + A + + + ++ +L+G + A K+
Sbjct: 247 -SASLEKDAD--GKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 301
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H A Q L+VKN+ D+ EK++E F +G +T + ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L + P G + ++M+ E+G+SKGF FV F + E A KAI
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAI 379
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 380 TEKNQQIVAGKPLYVAIAQRKD 401
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 133/276 (48%), Gaps = 14/276 (5%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ +
Sbjct: 43 ASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 102
Query: 161 AKKAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVET 216
++A+++L+ +KGK R S+ + GNV KN K + D
Sbjct: 103 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGN 162
Query: 217 IELIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
I K Q+ N +G+ FV +Y A A + K +N N + S D
Sbjct: 163 ILSCKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDR 218
Query: 276 SAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYA 330
+ ++KA +Y+KNI + + E+ +ELF++ GE+T + + GK R FGF++++
Sbjct: 219 QSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFS 278
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV + + EI Q L V A+ + +++ E
Sbjct: 279 THESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEE 314
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 69/118 (58%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V+I + +D +EE+ R+L E G++ L +D+E G+S+GF
Sbjct: 215 KKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFG 273
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIE 208
FV+F + E A+ A+DE++ KE++ + +L++G K+ E+E RK E
Sbjct: 274 FVNFSTHESAQAAVDEMNEKEIRTQ-----------KLYVGRAQKKHEREEELRKQYE 320
Score = 39.3 bits (90), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
G+SKGF FV F S + A KA+ E++ + + GK + +L++ K+
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKD 472
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 14/274 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P + + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 61 PQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGE 120
Query: 163 KAIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ L GNV KN K + D I
Sbjct: 121 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 180
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
K Q+ + N +G+ FV Y + A + K +N N L+ + + PK D +
Sbjct: 181 SCKVAQDENGNSKGYGFVHYETDEAAAQAI-KHVN-NMLLNEKKVYVGYHIPKK--DRQS 236
Query: 278 AASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
++KA +YVKNI + E+ ++LF ++G+VT + GK R FGF+++
Sbjct: 237 KFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTH 296
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A KAV++ E GQ L V A+ + +++ E
Sbjct: 297 ECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEE 330
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 101/427 (23%), Positives = 163/427 (38%), Gaps = 95/427 (22%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E+G SKG+ FV + + E A +AI +
Sbjct: 155 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 213
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
++ L K + + E K +++ N+ T++EFR + G V
Sbjct: 214 NNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYG-DV 272
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L +D + ++RGF FV + + CA + +++ F+ G + A K +
Sbjct: 273 TSSSLARDSE--GKSRGFGFVNFTTHECAAKAVEELNGKEFR--GQDLYVGRAQKKHERE 328
Query: 275 HSA-----AASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPG---- 317
AA KA LY+KN+ D+ +K++++F +G +T VM
Sbjct: 329 EELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKLRQMFSEYGPITSAKVMRDAVTEG 388
Query: 318 -----------------------------------KSGKR------DFGFIHYAERSSAL 336
K G R FGF+ ++ A
Sbjct: 389 SAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTEKKGDRRLGKSKGFGFVCFSNPDDAT 448
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSV 396
KAV + + I+G+ L V LA+ + +K + L AG P +
Sbjct: 449 KAVAEMNQRMIEGKPLYVALAQRKDVRKNQLEASIQ---ARNQLRMQQAAAQAGLPQQYM 505
Query: 397 GTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQPGVQMPPPRPRRVDRSN 456
T A G QQP MP G +P P G +G Q G RP +
Sbjct: 506 QTPVYYAPG-QQPNF-----MPPGGRGMP--FPQGGLGMPAVQGG------RPGQFPPYA 551
Query: 457 GPGGRGG 463
GGRGG
Sbjct: 552 QQGGRGG 558
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 137/273 (50%), Gaps = 21/273 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 128
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q +G++FV + N + AD + ++M N KL K+ D A
Sbjct: 129 VMSDDQGS---KGYAFVHFQNQSAADRAIEEM---NGKLLKGCKVFV-GRFKNRKDREAE 181
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ +
Sbjct: 182 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 241
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A KAV++ +I+GQ++ V A+ + +++ E
Sbjct: 242 AAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 274
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 127/298 (42%), Gaps = 54/298 (18%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LKG + R SE N ++I N + ++ + V G
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-VYIKNFGGDMDDERLKDVFSKYGKT 216
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--S 271
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 217 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 271
Query: 272 TPDHSAAASQVK----------ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
+ Q+K LY+KN+ D EK++ F G +++V + +
Sbjct: 272 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 331
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTH 379
+ FG I ++ A KA+ E++G++L G+ P S L H
Sbjct: 332 KGFGLICFSSPEDATKAMT-----EMNGRIL--------------GSKPLSIALAQRH 370
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + V+I D +E L+D+ G V++M D SG+SKG
Sbjct: 173 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 291
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ R G +I +K Q +++GF + +
Sbjct: 292 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 339
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 129/275 (46%), Gaps = 20/275 (7%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L + +E L D+ P+G + +R+ +D + S G+A+V++ E KKA
Sbjct: 48 NNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKA 107
Query: 165 IDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
I EL+ E+ G+ R SE +FI N+ + G +
Sbjct: 108 IQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSC 167
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276
+ + N +RGF FV + + A + + + ++G ++ PK D
Sbjct: 168 KVALDENGN---SRGFGFVHFKEESDAKDAIEAV--NGMLMNGLEVYVAMHVPKK--DRI 220
Query: 277 AAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
+ + KA +YVKNI T+ E+ ++LF ++GE+ + GK + FGF+++ +
Sbjct: 221 SKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVD 280
Query: 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
++A KAV++ E Q L V A+ + ++ E
Sbjct: 281 HNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEE 315
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 126/285 (44%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L + G+V ++ D E+G S+GF FV F+ + AK AI+ +
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAV 198
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ + G + + L E K +++ N+ T++EF ++ G V
Sbjct: 199 NGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIV 258
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L KD + + +GF FV + ++ A + +++ FK + A K
Sbjct: 259 -SAALEKDAE--GKPKGFGFVNFVDHNAAAKAVEELNGKEFK--SQALYVGRAQKKYERA 313
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
A Q L++KN+ D+ EK+KE F +G +T VM +
Sbjct: 314 EELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNS 373
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++
Sbjct: 374 KGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRSQ 418
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L +E L++ P G + R+M+D+E G SKGF FV F S E A KA+
Sbjct: 333 GVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQE-GNSKGFGFVCFSSPEEATKAM 391
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 392 TEKNQQIVAGKPLYVAIAQRKD 413
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 131/273 (47%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILS 168
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + S D +
Sbjct: 169 CKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 224
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +Y+KNI + E+ +++F++ GE+T + + GK R FGF++++
Sbjct: 225 FEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHD 284
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV + EI GQ L V A+ + +++ E
Sbjct: 285 SAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEE 317
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 91 DEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF 150
+KD+ ++ + N + V+I + ++ ++E+ R + E G++ L +D+E G+S+GF
Sbjct: 217 SKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGF 275
Query: 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV+F + + A+ A+DE++ KE+KG+ +L++G K E+E RK E
Sbjct: 276 GFVNFSTHDSAQAAVDEMNDKEIKGQ-----------KLYVGRAQKKHEREEELRKQYE 323
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 46/128 (35%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES--------------------- 144
G +++ L D +E LR+L P G + ++M+D +
Sbjct: 335 GVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEK 394
Query: 145 -------------------------GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179
G+SKGF FV F S + A KA+ E++ + + GK +
Sbjct: 395 EGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLY 454
Query: 180 CSLSETKN 187
+L++ K+
Sbjct: 455 VALAQRKD 462
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 131/273 (47%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILS 168
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + S D +
Sbjct: 169 CKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 224
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +Y+KNI + E+ +++F++ GE+T + + GK R FGF++++
Sbjct: 225 FEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHD 284
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV + EI GQ L V A+ + +++ E
Sbjct: 285 SAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEE 317
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 68/118 (57%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V+I + ++ ++E+ R + E G++ L +D+E G+S+GF
Sbjct: 218 KKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFG 276
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV+F + + A+ A+DE++ KE+KG+ +L++G K E+E RK E
Sbjct: 277 FVNFSTHDSAQAAVDEMNDKEIKGQ-----------KLYVGRAQKKHEREEELRKQYE 323
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 44/126 (34%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES--------------------- 144
G +++ L D +E LR+L P G + ++M+D +
Sbjct: 335 GVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEG 394
Query: 145 -----------------------GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181
G+SKGF FV F S + A KA+ E++ + + GK + +
Sbjct: 395 EEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVA 454
Query: 182 LSETKN 187
L++ K+
Sbjct: 455 LAQRKD 460
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 142/298 (47%), Gaps = 14/298 (4%)
Query: 79 EEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL 138
E + ++SV D ++ + + N + +++G L +E L ++ PIG V +R+
Sbjct: 39 ESSDATSSSVPADSAEEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRV 98
Query: 139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV- 194
+D S +S G+A+V++ E +KAI+EL+ ++G+ R S+ + R GN+
Sbjct: 99 CRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIF 158
Query: 195 PKNWTEDEFRKVIEDVGPGVETIELIK-DPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253
KN K + D I +K + +++ F FV Y A Q + +
Sbjct: 159 IKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAA----QAAIES 214
Query: 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEV 309
+ N + S D + ++KA +YVKNI + ++ +ELF G++
Sbjct: 215 VNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKI 274
Query: 310 TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
T + + GK + FGF+++ E +A KAV++ EI+GQ + V A+ + ++ E
Sbjct: 275 TSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEE 332
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 132/285 (46%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + V++ D + G+SK F FV + ++E A+ AI+ +
Sbjct: 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 169 HS-----------KELKGKTIRCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ K + K L E K +++ N+ +TE EF ++ G +
Sbjct: 216 NGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGK-I 274
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD + +++GF FV + + A + +++ + +++G + A K
Sbjct: 275 TSIYLEKDAE--GKSKGFGFVNFEEHEAAAKAVEELNDK--EINGQKIYVGRAQKKRERT 330
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ + Q L+VKN+ + +EK++E F+ G +T + +GK
Sbjct: 331 EELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKS 390
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + ++G+ L V LA+ + ++++
Sbjct: 391 KGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQ 435
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L + E L + +P G + ++M D ++G+SKGF FV F + E A KAI
Sbjct: 350 GVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVD-DAGKSKGFGFVCFSTPEEATKAI 408
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + + GK + +L++ K+
Sbjct: 409 TEMNQRMVNGKPLYVALAQRKD 430
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 127/276 (46%), Gaps = 20/276 (7%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ ++
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 164 AIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A+DEL+ +KGK R S+ + +FI N+ G +
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 157
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
+ ++ +D S+ GF ++Y A A + K +N N + S D
Sbjct: 158 SCKVAQDEFGVSKGYGF---VHYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDR 211
Query: 276 SAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYA 330
+ ++KA +Y+KNI E+ ++LF++ GE+T + GK R FGF++++
Sbjct: 212 QSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFS 271
Query: 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV++ E+ Q L V A+ + +++ E
Sbjct: 272 THESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEE 307
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K ++I N+ ++EFRK+ E G +
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE-I 249
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L +D + ++RGF FV + + A + ++M + + + A K +
Sbjct: 250 TSATLSRDSE--GKSRGFGFVNFSTHESAQAAVEEMNDKEVR--SQKLYVGRAQKKHERE 305
Query: 275 HSA-----AASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVT 310
AA KA LYVKN+ D+ +K++ELF +G +T
Sbjct: 306 EELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTIT 353
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 129/284 (45%), Gaps = 39/284 (13%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + ++I + + +E+ R L E G++ L +D E G+S+GF
Sbjct: 208 KKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFG 266
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIEDV 210
FV+F + E A+ A++E++ KE++ + +L++G K E+E RK E
Sbjct: 267 FVNFSTHESAQAAVEEMNDKEVRSQ-----------KLYVGRAQKKHEREEELRKQYEAA 315
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN--------ANFKLDGNTP 262
+ S+ +G + LY N D K+ + K+ +T
Sbjct: 316 -----------RMEKASKYQGVN--LYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTA 362
Query: 263 TISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR 322
+ A P+S SA KA + E+ ++ ++ E P GKS +
Sbjct: 363 PVETATPESETKESANKENEKA---AEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKS--K 417
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
FGF+ ++ A KAV + + ++G+ L V LA+ + ++++
Sbjct: 418 GFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 461
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 131/274 (47%), Gaps = 16/274 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 48 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 107
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 108 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 167
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT---ISWADPKSTPDH 275
K Q+ N +G+ FV +Y A A + K +N D IS D +S D
Sbjct: 168 CKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDE 226
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVM---PPGKSGKRDFGFIHYAER 332
A +Y+KNI + + E+ +++F++ GE+T + P GKS R FGF++Y+
Sbjct: 227 MKA--NFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKS--RGFGFVNYSTH 282
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV + E+ Q L V A+ + +++ E
Sbjct: 283 ESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEE 316
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 128/285 (44%), Gaps = 39/285 (13%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + ++I + D +EE+ R + E G++ L +D E G+S+GF
Sbjct: 217 KKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPE-GKSRGFG 275
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIEDV 210
FV++ + E A+ A+DE+H KE+K + +L++G K+ E+E RK E
Sbjct: 276 FVNYSTHESAQAAVDEMHDKEVKTQ-----------KLYVGRAQKKHEREEELRKQYEAA 324
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM---------LNANFKLDGNT 261
+ S+ +G + LY N D +K+ + + + +T
Sbjct: 325 -----------RLEKASKYQGVN--LYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDST 371
Query: 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
P P S + K + + E +E + K ++ GKS
Sbjct: 372 PAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKESDEEKKDETKKSDKKLL--GKS-- 427
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KAV + + ++G+ L V LA+ + ++++
Sbjct: 428 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 472
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 164/378 (43%), Gaps = 52/378 (13%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D G++ ++ D E+G+SKGF +V F E A +AID L
Sbjct: 125 IFIKNLHPDIDNKALYDTFSVFGNILSSKVATD-ETGKSKGFGYVHFEEDESASEAIDAL 183
Query: 169 HSKELKGKTIRC-----------SLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I E K ++I N+ T+ EF +++ G
Sbjct: 184 NGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGK-T 242
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++ L + P+ N+GF FV + N+ A +++ N FK G ++ A K
Sbjct: 243 DSVVLERTPE--GENKGFGFVNFVNHEDAVKCVEELNNTEFK--GQPLYVNRAQKKYERQ 298
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+T A Q L++KN+ D+ +K++E F +G +T + ++GK
Sbjct: 299 QELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKS 358
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++ + +
Sbjct: 359 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ---------LAQQIQ 409
Query: 382 HAGYGGF-AGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVLQQP 440
F + + G+ F PM YG P P G VP P+ Q+ + P
Sbjct: 410 ARNQMRFQQASAAAAAAAAAGMPGQFMPPMFYGVMP-PRG---VPFNGPNPQMANMGAMP 465
Query: 441 GVQMPPPRPRRVDRSNGP 458
MPP + R NGP
Sbjct: 466 KNGMPPHQFR-----NGP 478
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 129/270 (47%), Gaps = 14/270 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F + AK AI+
Sbjct: 35 ASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIE 94
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
+L+ +KGK R S+ L GN+ KN D K + D I K
Sbjct: 95 KLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKV 154
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ + +++GF +V + D S + ++A + N I S + + +
Sbjct: 155 ATDETGKSKGFGYVHFEE----DESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEE 210
Query: 282 VKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
+KA +Y+KNI T+ ++ +EL + G+ VV+ G+ + FGF+++ A+
Sbjct: 211 MKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAV 270
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
K V++ E GQ L V A+ + +++ E
Sbjct: 271 KCVEELNNTEFKGQPLYVNRAQKKYERQQE 300
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L ++ L + P G + ++M E+G+SKGF FV F + E A KAI
Sbjct: 318 GINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTT-ENGKSKGFGFVCFSTPEEATKAI 376
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 377 TEKNQQIVAGKPLYVAIAQRKD 398
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 133/279 (47%), Gaps = 28/279 (10%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L ++ PIG V +R+ +D S +S G+A+V++ E +KA
Sbjct: 50 NSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKA 109
Query: 165 IDELHSKELKGKTIRCSLSET--------KNRLFIGN----VPKNWTEDEFRKVIEDVGP 212
I+EL+ ++G+ R S+ +FI N + D F + +
Sbjct: 110 IEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSC 169
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
V T E +++ F FV Y A+ + + N N L N + S
Sbjct: 170 KVATDEF-------GQSKCFGFVHY---ETAEAAEAAIENVNGMLL-NDREVFVGKHISK 218
Query: 273 PDHSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFI 327
D + ++KA +YVKNI N S E ++LF G++T + + + GK + FGF+
Sbjct: 219 KDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFV 278
Query: 328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
++ + SA+KAV++ EI+GQ + V A+ + ++ E
Sbjct: 279 NFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEE 317
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 131/285 (45%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D E G+SK F FV + + E A+ AI+ +
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVHYETAEAAEAAIENV 200
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK I E+K +++ N+ N++E+ F K+ G +
Sbjct: 201 NGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGK-I 259
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD +++GF FV + ++ A + +++ + +++G + A K
Sbjct: 260 TSIYLEKD--QDGKSKGFGFVNFEDHESAVKAVEELNDK--EINGQKIYVGRAQKKRERL 315
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ A Q L+VKN+ D +EK++E F+ G +T + ++GK
Sbjct: 316 EELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKS 375
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ + A KA+ + I+G+ L V LA+ + ++++
Sbjct: 376 KGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQ 420
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L E L + +P G + ++M D E+G+SKGF FV F + E A KAI
Sbjct: 335 GVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTPEEATKAI 393
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++++ + GK + +L++ K+
Sbjct: 394 TEMNTRMINGKPLYVALAQRKD 415
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 144/352 (40%), Gaps = 52/352 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G + ++ D E G +KG+ FV F S E A AI+ +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 169 HSKELKGKTIRC--------------SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + +L ++I N+ TE EF + G +
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGE-I 287
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
++ L+KD QN + RGF FV Y N+ CA + ++ + +K G + A K +
Sbjct: 288 TSLSLVKD-QN-DKPRGFGFVNYANHECAQKAVDELNDKEYK--GKKLYVGRAQKKHERE 343
Query: 275 HSAAA--SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
Q+K L++KN+ D E++K F G +T + + GK
Sbjct: 344 EELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKS 403
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSP-GLVPTHL 380
+ FGF+ Y A KAV + + + G+ L V LA+ + ++++
Sbjct: 404 KGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQ 463
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRG--PMPS-----GMHMVP 425
A G YG+ G P+IYG G P+P+ GM MVP
Sbjct: 464 QVAAAAGIPAVQYGATG-----------PLIYGPGGYPIPAAVNGRGMPMVP 504
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 131/273 (47%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P + +++G L +E L +L IG V +R+ +D + S G+A+V+F + E +K
Sbjct: 77 PTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 136
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+DEL+ +KG+ R S+ + ++ GNV KN K + D I
Sbjct: 137 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILS 196
Query: 220 IKDPQNPSRN-RGFSFVLY----YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
K + N +G+ FV + NA ++ +LN G+ +S + +S +
Sbjct: 197 CKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH--HVSRRERQSKVE 254
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
A + +Y+KN+ + ++ +LF + GE+T + + ++ K R FGF++YA
Sbjct: 255 --ALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHE 312
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A KAV + E G+ L V A+ + +++ E
Sbjct: 313 CAQKAVDELNDKEYKGKKLYVGRAQKKHEREEE 345
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L + +E L+ G + ++M D E G+SKGF FV + + E A KA+
Sbjct: 363 GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + L GK + +L++ K
Sbjct: 422 TEMNQRMLAGKPLYVALAQRK 442
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 150/325 (46%), Gaps = 23/325 (7%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGL 114
S A A++ +S E N D P EE + GE E+ A + + +++G L
Sbjct: 2 SAADANQVQESLE-KLNLDSAPVASTEETEQTASGETEE--AADSAQVSDTSASLYVGEL 58
Query: 115 PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174
+E L ++ PIG V +R+ +D + +S G+A+V+F E +KAI++L+ ++
Sbjct: 59 NPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIE 118
Query: 175 GKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
G+ R S+ +FI N+ G + + ++ D
Sbjct: 119 GRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGK-ILSCKVATDDMGI 177
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA-- 284
S+ GF ++Y A A + + +N + N + S D + ++KA
Sbjct: 178 SKCFGF---VHYETAEAAEAAIENVNG---MLLNDREVYVGKHISKKDRESKFEEMKANF 231
Query: 285 --LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKD 341
+Y KNI + S E+ K+LF+ +G++T + + GK + FGF+++ SA+KAV +
Sbjct: 232 TNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDE 291
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+GQ + V A+ + ++ E
Sbjct: 292 LNDKEINGQKIYVGRAQKKRERLEE 316
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 90/370 (24%), Positives = 161/370 (43%), Gaps = 54/370 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D + G SK F FV + + E A+ AI+ +
Sbjct: 141 IFIKNLHPAIDNKALHDTFTAFGKILSCKVATD-DMGISKCFGFVHYETAEAAEAAIENV 199
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK I E+K ++ N+ +++E+EF+K+ E G +
Sbjct: 200 NGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGK-I 258
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD + S+ GF FV + N+ A + ++ + +++G + A K
Sbjct: 259 TSIYLEKDHEGKSK--GFGFVNFENHESAVKAVDELNDK--EINGQKIYVGRAQKKRERL 314
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+T + Q L++KN+ D +EK++E F+ G +T + ++GK
Sbjct: 315 EELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKS 374
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ FGF+ ++ A KA+ + + I G+ L V LA+ + ++++ L
Sbjct: 375 KGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQ-------------LE 421
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPM---PSGMHMVPMVLPDGQIGYVLQ 438
+ TG G+ F PM YG+ P P+G P P+ Q +
Sbjct: 422 QQIQARNQMRMQNAAATG-GIPGQFIPPMFYGQQPGFFPPNGRGNGPFPGPNPQ----MM 476
Query: 439 QPGVQMPPPR 448
P Q+PPP+
Sbjct: 477 MPRGQIPPPQ 486
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L E L + +P G + R+M D E+G+SKGF FV F S E A KAI
Sbjct: 334 GVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVD-ETGKSKGFGFVCFSSPEEATKAI 392
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + + GK + +L++ K+
Sbjct: 393 TEMNQRMIYGKPLYVALAQRKD 414
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 129/271 (47%), Gaps = 16/271 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +E L +L IG V +R+ +D + S G+A+V++ + +KA++
Sbjct: 60 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 119
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
EL+ +KG+ R S+ + GN+ KN K + D I K
Sbjct: 120 ELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKV 179
Query: 223 PQNPSRN-RGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAAS 280
Q+ N +G+ FV Y + A Q + + N L+ + PK D +
Sbjct: 180 AQDEHGNSKGYGFVHYETDEAAS---QAIKHVNGMLLNEKKVYVGHHIPKK--DRQSKFE 234
Query: 281 QVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSA 335
++KA +YVKNI + + E+ +ELF + GEVT + + GK R FGF+++ +A
Sbjct: 235 EMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAA 294
Query: 336 LKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+AV + + GQ L V A+ + +++ E
Sbjct: 295 AQAVDELNGKDFRGQDLYVGRAQKKHEREEE 325
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 80/155 (51%), Gaps = 26/155 (16%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + + ++E+ R+L G+V L +D+E G+S+GF
Sbjct: 226 KKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKSRGFG 284
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV+F + E A +A+DEL+ K+ +G+ + ++ K+
Sbjct: 285 FVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGV 344
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
L+I N+ + +D+ R + + GP + + ++++D
Sbjct: 345 NLYIKNLGDDVDDDKLRAMFSEYGP-ITSAKVMRD 378
Score = 39.7 bits (91), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 141 DKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
D++ G+SKGF FV F + + A KA+ E++ + + GK + +L++ K+
Sbjct: 418 DRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKD 464
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 127/269 (47%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS----AA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ G++L A+ + +++ E
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 127/291 (43%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTP 273
++++++D N +R F FV + + + +++ +++ N K + G A +
Sbjct: 219 -SVKVMRD--NSGHSRCFGFVNFEKH---EEAQKAVVHMNGKEVSGRLLYAGRAQKRVER 272
Query: 274 DHSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG 320
+ Q+K LYVKN+ D+ +K+++ F +G +T VM G
Sbjct: 273 QNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
K FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 K-GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGTKPLYVALAQRK 371
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 132/274 (48%), Gaps = 15/274 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 112 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 171
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 172 CKVAQDEFGNSKGYGFV-HYETAEAAQNAIKHVNGMLL---NDKKVFVGHHIAKKDRQSK 227
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGK-RDFGFIHYAER 332
++KA +YVKNI +T+ E+ ++LF++ GE+T + +SGK R FGF+++
Sbjct: 228 FEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSH 287
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A AV+ + GQ L V A+ + +++ E
Sbjct: 288 DNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEE 321
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 130/285 (45%), Gaps = 38/285 (13%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + +D +EE+ RDL E G++ L +D ESG+S+GF
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNV-PKNWTEDEFRKVIEDV 210
FV+F S + A A++ L+ K+ KG+ +L++G K+ E+E RK E
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQ-----------KLYVGRAQKKHEREEELRKQYE-- 327
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM--LNANFKLDGNTPTISWAD 268
IE S+ +G + LY N D +K+ L +++ + +
Sbjct: 328 ---AARIE------KASKYQGVN--LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFA 376
Query: 269 PKSTPDH-------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
P+ST D S + DN + KE + P GKS
Sbjct: 377 PESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKE--NKAESKKSEKKPLGKS-- 432
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KAV + + + G+ L V LA+ + ++++
Sbjct: 433 KGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQ 477
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 130/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L DA+E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++K+LF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+ + V A+ + +++TE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L+DL G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ ++ + + GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
+++++ D +++GF FV + + A + +M N +L+G + A K
Sbjct: 219 -SVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + +++ T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++KELF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+ + V A+ + +++TE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L++L G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 136/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
+++++ D +++GF FV + + A + +M N +L+G + A K
Sbjct: 219 -SVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + +++ T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 129/273 (47%), Gaps = 20/273 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +E L ++ PIG V +R+ +D S +S G+A+V++ E +KAI+
Sbjct: 52 ASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIE 111
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
EL+ ++G+ R S+ +FI N+ G + + +
Sbjct: 112 ELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGK-ILSCK 170
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ D S+ GF ++Y A A + + +N + N + S D +
Sbjct: 171 VATDDMGQSKCFGF---VHYETAEAAEAAIENVNG---MLLNDREVFVGKHISKKDRESK 224
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +YVKNI S E +K+LF +G +T + + GK + FGF++Y
Sbjct: 225 FEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHE 284
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A+KAV++ EI+GQ + V A+ + ++ E
Sbjct: 285 AAVKAVEELNDKEINGQKIYVGRAQKKRERMEE 317
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 131/285 (45%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D + G+SK F FV + + E A+ AI+ +
Sbjct: 142 IFIKNLHPAIDNKALHDTFSTFGKILSCKVATD-DMGQSKCFGFVHYETAEAAEAAIENV 200
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK I E+K +++ N+ ++E++ +K+ G +
Sbjct: 201 NGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYG-AI 259
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD + S+ GF FV Y + A + +++ + +++G + A K
Sbjct: 260 TSIYLEKDAEGKSK--GFGFVNYEGHEAAVKAVEELNDK--EINGQKIYVGRAQKKRERM 315
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+T + Q L++KN+ D +EK++E F+ G +T + ++GK
Sbjct: 316 EELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKS 375
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + G+ L V LA+ + ++++
Sbjct: 376 KGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDVRRSQ 420
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L E L + +P G + R+M D E+G+SKGF FV F S E A KAI
Sbjct: 335 GVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVD-ETGKSKGFGFVCFSSPEEATKAI 393
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + GK + +L++ K+
Sbjct: 394 TEMNQRMFFGKPLYVALAQRKD 415
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 147/343 (42%), Gaps = 44/343 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L + G + ++ D G SKG+ FV F +E A+ AID+L
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 169 HSKELKGKTIRC---------SLSETK-----NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + SE+ +++ N+PK T+DE +K G +
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYG-DI 265
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ ++KD SR+ F FV + + A + +KM L + + A KS +
Sbjct: 266 SSAVVMKDQSGNSRS--FGFVNFVSPEAAAVAVEKM--NGISLGEDVLYVGRAQKKSDRE 321
Query: 275 HSAAAS------------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
Q LY+KN+ D+ + EK+KE+F +G VT VM +
Sbjct: 322 EELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS 381
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY----SPG-LV 376
R FGF+ Y+ AL A+K+ I + L V LA+ + +++ + SPG +
Sbjct: 382 RGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMS 441
Query: 377 PTHLPHAGY-----GGFAGTPYGSVGTGF-GVAAGFQQPMIYG 413
P P +G+ GG P+ + G G QPM YG
Sbjct: 442 PVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYG 484
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 126/273 (46%), Gaps = 16/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
PN S +++G L +E L DL + V +R+ +D + S G+A+V+F + E A +
Sbjct: 57 PN-SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASR 114
Query: 164 AIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A++ L+ ++ + IR LS K +FI N+ + + G +
Sbjct: 115 AMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG-TIL 173
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPD 274
+ ++ D R++G+ FV + A + K LN D + +
Sbjct: 174 SCKVAMDVV--GRSKGYGFVQFEKEETAQAAIDK-LNGMLLNDKQVFVGHFVRRQDRARS 230
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERS 333
S A +YVKN+P + +++K+ F ++G+++ V+ +SG R FGF+++
Sbjct: 231 ESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPE 290
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A AV+ + VL V A+ ++D++ E
Sbjct: 291 AAAVAVEKMNGISLGEDVLYVGRAQKKSDREEE 323
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 31/183 (16%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + V++ LPK+ ++++L+ GD+ +MKD +SG S+ F FV+F S E A
Sbjct: 236 PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAV 294
Query: 164 AIDELHSKELKGKTIRCSLSETK------------------------NRLFIGNVPKNWT 199
A+++++ L + ++ K + L++ N+ +
Sbjct: 295 AVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVN 354
Query: 200 EDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259
+++ +++ + G V + +++ + Q S RGF FV Y N A + ++M N K+ G
Sbjct: 355 DEKLKEMFSEYG-NVTSCKVMMNSQGLS--RGFGFVAYSNPEEALLAMKEM---NGKMIG 408
Query: 260 NTP 262
P
Sbjct: 409 RKP 411
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++KELF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+ + V A+ + +++TE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L++L G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 136/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
+++++ D +++GF FV + + A + +M N +L+G + A K
Sbjct: 219 -SVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + +++ T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 137/341 (40%), Gaps = 36/341 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
++I L + L D G + ++ D E G S+GF FV + S E A+ AI +
Sbjct: 136 IYIKNLDPAIDNKALHDTFSAFGQILSCKIATD-EFGNSRGFGFVHYESAESAESAIQHV 194
Query: 169 HSKELKGKTIRC-----------SLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + S E KN +FI N+ TE EF +++ G
Sbjct: 195 NGMLLNDKKVFVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNKFG--- 251
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
ET + + + GF FV Y + A + + FK GN A K
Sbjct: 252 ETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFK--GNKLFAGRAKKKYERA 309
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
++ Q LY+KN+ D +K++ F HG +T + ++GK
Sbjct: 310 DELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKS 369
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ FGF+ Y+ A KAV + + G+ L VVLA+ + ++++
Sbjct: 370 KGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLAQRKDVRRSQLQQQIQAKNQMRLQQ 429
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMH 422
A GG G G+ G + GF P GRG MP G +
Sbjct: 430 QAAAGGLPGQYMGNPGVFYPGQPGFMPP---GRGGMPFGAN 467
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 117/268 (43%), Gaps = 10/268 (3%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +E L ++ PIG V VR+ +D + S G+A+V+F ++ +A++
Sbjct: 46 ASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALE 105
Query: 167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
EL+ +K + R S+ + GN+ KN K + D I K
Sbjct: 106 ELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKI 165
Query: 223 PQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS--AAA 279
+ N RGF FV Y + A+ + Q + L+ + PKS S
Sbjct: 166 ATDEFGNSRGFGFVHYESAESAESAIQHV--NGMLLNDKKVFVGPHVPKSDRMQSFEEQK 223
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338
+ +++KN+ + + +EL + GE + V + GK FGF+ Y E A+KA
Sbjct: 224 NSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKA 283
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ + E G L AK + ++ E
Sbjct: 284 IDGLSETEFKGNKLFAGRAKKKYERADE 311
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L ++ LR P G + ++M D E+G+SKGF FV + S E A KA+
Sbjct: 329 GVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVD-EAGKSKGFGFVCYSSPEEATKAV 387
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + + GK + L++ K+
Sbjct: 388 TEMNHRLVAGKPLYVVLAQRKD 409
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 130/273 (47%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 51 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 111 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 170
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + S D +
Sbjct: 171 CKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 226
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +Y+KN+ ++ +++F++ GE+T + + GK R FGF++++
Sbjct: 227 FEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHE 286
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV++ EI Q L V A+ + +++ E
Sbjct: 287 SAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEE 319
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 28/226 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K ++I N+ +DEFRK+ E G +
Sbjct: 203 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGE-I 261
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD----GNTPTISWADPK 270
+ L +D + ++RGF FV + + A + ++M + + G + +
Sbjct: 262 TSATLSRDQE--GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEE 319
Query: 271 STPDHSAA----ASQVKA--LYVKNIPDNTSTEKIKELFQRHGEVT 310
+ AA AS+ + LYVKN+ D+ EK++ELF +G +T
Sbjct: 320 LRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTIT 365
Score = 39.3 bits (90), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
K G+SKGF FV F S + A KA+ E++ + + GK + +L++ K+
Sbjct: 429 KPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKD 474
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 128/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ ++IG L D +E L + P G + +R+ +D + S +A+++F+ A++A+D
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GNV KN E K + D I K
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ +RG+ FV + + A+ + Q M N D + + ++ A +
Sbjct: 131 VCDEHGSRGYGFVHFETHEAANRAIQTM-NGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ ++++E+F G V + SG+ R FGF++Y A KAV
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVS 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+++ V A+ + ++++E
Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQSE 275
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/337 (22%), Positives = 135/337 (40%), Gaps = 52/337 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + + L D G++ +++ D+ S+G+ FV F + E A +AI +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ + R++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
++ D R+RGF FV Y N+ A + +M N +++G + A +
Sbjct: 219 SVKVMMDDS---GRSRGFGFVNYGNHEEAQKAVSEM-NGK-EVNGRMIYVGRAQKRIERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+ Q+K LYVKN+ D +++++ F +G +T VM G K
Sbjct: 274 SELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSK 333
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
FGF+ ++ A KAV + + + L V LA+ + ++K T Y L
Sbjct: 334 -GFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL------ 386
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMP 418
A G GS FQQP Y MP
Sbjct: 387 -ATMRAMPGPLLGS----------FQQPANYFLSAMP 412
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMT--EGGHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVSTKPLYVALAQRK 371
>sp|Q8IYX4|DND1_HUMAN Dead end protein homolog 1 OS=Homo sapiens GN=DND1 PE=1 SV=1
Length = 353
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 4/168 (2%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEVFIG LP+D E L L + +G ++E RLM SG ++GFA+ + S+ A+
Sbjct: 54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQ 112
Query: 163 KAIDELHSKELKGKT-IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI LH+ L+ + S K L + +P N T ++ +GPG++ L+
Sbjct: 113 AAIATLHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLP 172
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
P P+ + + + + ++ A +++ ++ L G + W P
Sbjct: 173 SP-GPAPGQ-IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 143/347 (41%), Gaps = 53/347 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + + L D GD+ ++ D E+G+S+GFAFV + + E A AI +
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAV 194
Query: 169 HSKELK----------GKTIRCS----LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK R S L ++I NV T+ EF +++ GP +
Sbjct: 195 NGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTI 254
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACA----DYSRQKMLNANFKLDGNTPTISWADPK 270
++ L +D + S+ GF FV Y N+ A D +K +N G T S + +
Sbjct: 255 -SVALSRDEKGVSK--GFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAE 311
Query: 271 STPDH------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRD 323
H + A S LYVKN+ D ++++ F+ G +T VM R
Sbjct: 312 LKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRG 371
Query: 324 FGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK----------PQTDKKTEGTFPYSP 373
FGF+ Y+ A KAV + I + L V LA+ Q ++ + Y
Sbjct: 372 FGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQRMQYGA 431
Query: 374 GLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYG---RGPM 417
G G G+ G P G+ G+ QPM RGPM
Sbjct: 432 GF-------PGMQGYMGQPM----YGYPPMPGYGQPMPGMPPVRGPM 467
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 31/195 (15%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+K++ +++ L + V+I + + ++ + DL +P G V L +D E G SKGF
Sbjct: 212 KKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EKGVSKGFG 270
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV++ + E A+KA+DEL+ KE+ GK + ++TK+
Sbjct: 271 FVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGV 330
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
L++ N+ W +D R E G + + ++++D S RGF FV Y + D +
Sbjct: 331 NLYVKNLDDEWDDDRLRAEFEAFG-TITSSKVMRDDSGVS--RGFGFVCY---SSPDEAT 384
Query: 248 QKMLNANFKLDGNTP 262
+ + N K+ G P
Sbjct: 385 KAVSEMNGKMIGTKP 399
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 119/270 (44%), Gaps = 14/270 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +E L ++ IG V +R+ +D + S G+A+V++ + ++A++
Sbjct: 46 ASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 105
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L+ +KG++ R S+ + +FI N+ ++ G + +
Sbjct: 106 HLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFG---DILS 162
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH-SA 277
++RGF+FV Y AD + K +N D K
Sbjct: 163 CKVGTDENGKSRGFAFVHYSTGEAAD-AAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEE 221
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSAL 336
+Q +Y+KN+ + + ++L + G V + + G + FGF++Y SA
Sbjct: 222 LRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESAR 281
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
KAV + + E++G+ L A+ +++++ E
Sbjct: 282 KAVDELNEKEVNGKKLYAGRAQTKSEREAE 311
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L + ++ LR E G + ++M+D +SG S+GF FV + S + A KA+
Sbjct: 329 GVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRD-DSGVSRGFGFVCYSSPDEATKAV 387
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ K + K + +L++ K+
Sbjct: 388 SEMNGKMIGTKPLYVALAQRKD 409
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 143/347 (41%), Gaps = 53/347 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + + L D GD+ ++ D E+G+S+GFAFV + + E A AI +
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAV 194
Query: 169 HSKELK----------GKTIRCS----LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK R S L ++I NV T+ EF +++ GP +
Sbjct: 195 NGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTI 254
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACA----DYSRQKMLNANFKLDGNTPTISWADPK 270
++ L +D + S+ GF FV Y N+ A D +K +N G T S + +
Sbjct: 255 -SVALSRDEKGVSK--GFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAE 311
Query: 271 STPDH------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRD 323
H + A S LYVKN+ D ++++ F+ G +T VM R
Sbjct: 312 LKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRG 371
Query: 324 FGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK----------PQTDKKTEGTFPYSP 373
FGF+ Y+ A KAV + I + L V LA+ Q ++ + Y
Sbjct: 372 FGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQRMQYGA 431
Query: 374 GLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYG---RGPM 417
G G G+ G P G+ G+ QPM RGPM
Sbjct: 432 GF-------PGMQGYMGQPM----YGYPPMPGYGQPMPGMPPVRGPM 467
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 31/195 (15%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+K++ +++ L + V+I + + ++ + DL +P G V L +D E G SKGF
Sbjct: 212 KKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EKGVSKGFG 270
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN------------------------ 187
FV++ + E A+KA+DEL+ KE+ GK + ++TK+
Sbjct: 271 FVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGV 330
Query: 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
L++ N+ W +D R E G + + ++++D S RGF FV Y + D +
Sbjct: 331 NLYVKNLDDEWDDDRLRAEFEAFG-TITSSKVMRDDSGVS--RGFGFVCY---SSPDEAT 384
Query: 248 QKMLNANFKLDGNTP 262
+ + N K+ G P
Sbjct: 385 KAVSEMNGKMIGTKP 399
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 119/270 (44%), Gaps = 14/270 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +E L ++ IG V +R+ +D + S G+A+V++ + ++A++
Sbjct: 46 ASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 105
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
L+ +KG++ R S+ + +FI N+ ++ G + +
Sbjct: 106 HLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFG---DILS 162
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH-SA 277
++RGF+FV Y AD + K +N D K
Sbjct: 163 CKVGTDENGKSRGFAFVHYSTGEAAD-AAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEE 221
Query: 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSAL 336
+Q +Y+KN+ + + ++L + G V + + G + FGF++Y SA
Sbjct: 222 LRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESAR 281
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
KAV + + E++G+ L A+ +++++ E
Sbjct: 282 KAVDELNEKEVNGKKLYAGRAQTKSEREAE 311
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L + ++ LR E G + ++M+D +SG S+GF FV + S + A KA+
Sbjct: 329 GVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRD-DSGVSRGFGFVCYSSPDEATKAV 387
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ K + K + +L++ K+
Sbjct: 388 SEMNGKMIGTKPLYVALAQRKD 409
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 217,195,084
Number of Sequences: 539616
Number of extensions: 11082907
Number of successful extensions: 98357
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1571
Number of HSP's successfully gapped in prelim test: 1283
Number of HSP's that attempted gapping in prelim test: 57718
Number of HSP's gapped (non-prelim): 22868
length of query: 482
length of database: 191,569,459
effective HSP length: 121
effective length of query: 361
effective length of database: 126,275,923
effective search space: 45585608203
effective search space used: 45585608203
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)