Query 011574
Match_columns 482
No_of_seqs 424 out of 3793
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 02:53:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 1.7E-59 3.7E-64 423.0 36.3 258 102-366 79-337 (506)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 3E-48 6.4E-53 380.8 36.7 252 103-362 55-309 (578)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.4E-45 9.5E-50 353.3 31.5 256 105-362 2-351 (352)
4 TIGR01628 PABP-1234 polyadenyl 100.0 5.3E-43 1.1E-47 357.9 38.0 254 107-363 1-367 (562)
5 KOG0145 RNA-binding protein EL 100.0 3E-42 6.5E-47 289.7 23.1 254 105-360 40-358 (360)
6 KOG0148 Apoptosis-promoting RN 100.0 4.9E-39 1.1E-43 272.3 22.5 226 105-363 5-241 (321)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7.9E-37 1.7E-41 304.1 30.0 241 106-361 2-352 (481)
8 TIGR01622 SF-CC1 splicing fact 100.0 3.2E-36 6.9E-41 301.3 29.9 249 104-359 87-447 (457)
9 KOG0127 Nucleolar protein fibr 100.0 1.9E-36 4E-41 280.2 23.2 252 105-361 4-379 (678)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7.5E-35 1.6E-39 289.9 29.6 242 106-360 96-480 (481)
11 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4.6E-35 1E-39 297.2 27.8 244 105-359 174-501 (509)
12 TIGR01659 sex-lethal sex-letha 100.0 9.1E-35 2E-39 272.7 26.5 173 102-364 103-279 (346)
13 KOG0144 RNA-binding protein CU 100.0 3.2E-35 6.9E-40 264.8 18.8 255 105-362 33-506 (510)
14 TIGR01645 half-pint poly-U bin 100.0 2.6E-33 5.5E-38 275.7 29.8 161 104-268 105-282 (612)
15 KOG0123 Polyadenylate-binding 100.0 1E-30 2.2E-35 246.4 21.9 243 107-362 2-248 (369)
16 KOG0123 Polyadenylate-binding 100.0 6.1E-31 1.3E-35 247.9 19.9 251 106-364 76-353 (369)
17 KOG0127 Nucleolar protein fibr 100.0 5.7E-29 1.2E-33 230.8 15.9 234 106-342 117-516 (678)
18 KOG0124 Polypyrimidine tract-b 100.0 1E-27 2.2E-32 211.7 19.3 249 105-357 112-532 (544)
19 KOG0110 RNA-binding protein (R 99.9 4.8E-27 1E-31 225.4 17.5 249 104-361 383-694 (725)
20 TIGR01645 half-pint poly-U bin 99.9 1.4E-26 3E-31 228.3 20.8 172 186-361 107-285 (612)
21 KOG0147 Transcriptional coacti 99.9 3E-27 6.5E-32 220.8 11.4 247 104-358 177-526 (549)
22 KOG0148 Apoptosis-promoting RN 99.9 2.6E-26 5.7E-31 195.2 15.0 157 106-272 62-240 (321)
23 KOG4212 RNA-binding protein hn 99.9 4.2E-25 9.1E-30 199.7 23.1 144 105-252 43-278 (608)
24 KOG0117 Heterogeneous nuclear 99.9 4.7E-24 1E-28 193.9 29.5 188 156-363 42-251 (506)
25 KOG0144 RNA-binding protein CU 99.9 2.6E-26 5.6E-31 207.5 13.7 172 187-365 35-211 (510)
26 KOG4211 Splicing factor hnRNP- 99.9 4.1E-24 8.8E-29 197.2 27.0 246 102-358 6-356 (510)
27 TIGR01648 hnRNP-R-Q heterogene 99.9 4.1E-24 8.9E-29 210.8 27.8 192 105-308 137-367 (578)
28 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 5.7E-25 1.2E-29 212.9 20.8 168 185-362 2-173 (352)
29 KOG0131 Splicing factor 3b, su 99.9 5.3E-25 1.1E-29 176.5 12.5 169 105-362 8-179 (203)
30 TIGR01622 SF-CC1 splicing fact 99.9 2.8E-24 6.1E-29 215.2 19.5 172 184-360 87-266 (457)
31 KOG0109 RNA-binding protein LA 99.9 1.3E-24 2.8E-29 186.8 13.9 152 108-365 4-155 (346)
32 KOG4205 RNA-binding protein mu 99.9 1.6E-23 3.4E-28 190.2 20.8 176 105-366 5-182 (311)
33 TIGR01628 PABP-1234 polyadenyl 99.9 3.3E-24 7.2E-29 219.5 18.6 168 188-363 2-170 (562)
34 KOG0145 RNA-binding protein EL 99.9 9.5E-24 2.1E-28 178.4 13.0 170 184-363 39-212 (360)
35 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.1E-21 2.5E-26 199.2 19.4 169 183-361 172-376 (509)
36 KOG0146 RNA-binding protein ET 99.9 6.1E-21 1.3E-25 162.1 14.5 255 105-363 18-368 (371)
37 KOG0124 Polypyrimidine tract-b 99.8 6.7E-21 1.5E-25 168.8 11.2 168 187-360 114-290 (544)
38 KOG0110 RNA-binding protein (R 99.8 2E-20 4.2E-25 180.3 13.3 160 107-270 516-693 (725)
39 KOG1190 Polypyrimidine tract-b 99.8 1.8E-19 3.9E-24 162.3 15.9 241 105-361 27-374 (492)
40 PLN03134 glycine-rich RNA-bind 99.8 6.8E-19 1.5E-23 144.5 14.7 82 280-361 32-115 (144)
41 KOG4206 Spliceosomal protein s 99.8 4E-18 8.6E-23 143.2 17.8 207 106-358 9-220 (221)
42 KOG0120 Splicing factor U2AF, 99.8 1.4E-18 3.1E-23 165.5 16.0 243 105-358 174-490 (500)
43 KOG1548 Transcription elongati 99.8 1.5E-17 3.3E-22 147.1 18.2 204 102-360 130-352 (382)
44 KOG4211 Splicing factor hnRNP- 99.8 6.5E-17 1.4E-21 149.9 21.4 167 188-363 12-185 (510)
45 KOG0105 Alternative splicing f 99.8 2.8E-17 6.1E-22 132.3 13.7 141 104-256 4-176 (241)
46 KOG1365 RNA-binding protein Fu 99.7 1.9E-16 4.1E-21 141.7 18.4 251 104-360 58-362 (508)
47 PLN03134 glycine-rich RNA-bind 99.7 1.9E-17 4.2E-22 136.0 11.0 82 105-186 33-114 (144)
48 KOG1190 Polypyrimidine tract-b 99.7 7.3E-16 1.6E-20 139.3 20.3 240 105-359 149-490 (492)
49 KOG0147 Transcriptional coacti 99.7 2.9E-17 6.2E-22 154.4 9.7 174 186-364 179-362 (549)
50 KOG1457 RNA binding protein (c 99.7 2.4E-16 5.3E-21 130.9 10.2 221 104-347 32-273 (284)
51 KOG1456 Heterogeneous nuclear 99.7 2.1E-14 4.6E-19 128.3 20.1 245 101-361 26-364 (494)
52 KOG0125 Ataxin 2-binding prote 99.6 1.3E-15 2.9E-20 133.9 9.0 89 275-363 89-177 (376)
53 KOG0105 Alternative splicing f 99.6 1.6E-14 3.4E-19 116.6 12.9 153 185-349 5-177 (241)
54 KOG0122 Translation initiation 99.6 3.4E-15 7.5E-20 126.2 9.4 82 105-186 188-269 (270)
55 PF00076 RRM_1: RNA recognitio 99.6 3.5E-15 7.6E-20 107.9 8.2 69 285-353 1-70 (70)
56 PF00076 RRM_1: RNA recognitio 99.6 3.5E-15 7.5E-20 107.9 8.1 70 109-179 1-70 (70)
57 KOG0107 Alternative splicing f 99.6 2.8E-14 6E-19 114.5 13.4 76 282-360 10-85 (195)
58 KOG0106 Alternative splicing f 99.6 2.7E-15 5.9E-20 127.9 8.0 166 107-356 2-167 (216)
59 KOG0121 Nuclear cap-binding pr 99.6 3.7E-15 8.1E-20 112.7 7.5 81 280-360 34-116 (153)
60 KOG0149 Predicted RNA-binding 99.6 3.4E-15 7.3E-20 125.9 6.8 78 106-184 12-89 (247)
61 KOG0121 Nuclear cap-binding pr 99.6 4.5E-15 9.8E-20 112.2 6.4 81 104-184 34-114 (153)
62 KOG1456 Heterogeneous nuclear 99.6 1.9E-12 4.2E-17 115.9 23.1 236 111-360 127-491 (494)
63 KOG0122 Translation initiation 99.6 1.3E-14 2.8E-19 122.7 8.5 81 280-360 187-269 (270)
64 PF14259 RRM_6: RNA recognitio 99.5 2.7E-14 5.8E-19 103.0 8.7 70 109-179 1-70 (70)
65 TIGR01659 sex-lethal sex-letha 99.5 2E-14 4.3E-19 135.6 10.0 81 280-360 105-187 (346)
66 KOG0126 Predicted RNA-binding 99.5 1.1E-15 2.3E-20 123.0 0.7 82 103-184 32-113 (219)
67 PLN03120 nucleic acid binding 99.5 3.9E-14 8.5E-19 124.2 10.4 77 282-360 4-80 (260)
68 PF14259 RRM_6: RNA recognitio 99.5 4E-14 8.7E-19 102.1 8.5 69 285-353 1-70 (70)
69 KOG4207 Predicted splicing fac 99.5 6.2E-14 1.3E-18 115.3 9.1 80 282-361 13-94 (256)
70 KOG4212 RNA-binding protein hn 99.5 3.9E-13 8.4E-18 122.7 15.1 170 186-359 44-293 (608)
71 PLN03120 nucleic acid binding 99.5 8.2E-14 1.8E-18 122.2 10.1 76 106-185 4-79 (260)
72 KOG0107 Alternative splicing f 99.5 6.5E-14 1.4E-18 112.4 7.6 75 105-184 9-83 (195)
73 COG0724 RNA-binding proteins ( 99.5 3.6E-13 7.8E-18 126.8 13.5 167 106-340 115-285 (306)
74 KOG0114 Predicted RNA-binding 99.5 2E-13 4.4E-18 99.3 8.8 78 105-185 17-94 (124)
75 KOG0149 Predicted RNA-binding 99.5 1.5E-13 3.2E-18 116.1 9.1 77 282-359 12-90 (247)
76 KOG4207 Predicted splicing fac 99.5 6.1E-14 1.3E-18 115.4 6.3 81 104-184 11-91 (256)
77 KOG0114 Predicted RNA-binding 99.5 4E-13 8.8E-18 97.7 9.6 78 282-360 18-95 (124)
78 KOG0113 U1 small nuclear ribon 99.5 1.5E-13 3.3E-18 119.6 8.5 80 105-184 100-179 (335)
79 PLN03121 nucleic acid binding 99.5 2.9E-13 6.3E-18 116.6 9.9 78 104-185 3-80 (243)
80 PLN03213 repressor of silencin 99.5 2.6E-13 5.6E-18 125.8 9.3 77 282-360 10-88 (759)
81 PLN03121 nucleic acid binding 99.4 7.4E-13 1.6E-17 114.1 10.3 78 281-360 4-81 (243)
82 KOG0130 RNA-binding protein RB 99.4 2.5E-13 5.5E-18 103.8 6.1 80 105-184 71-150 (170)
83 PLN03213 repressor of silencin 99.4 4.4E-13 9.5E-18 124.3 8.8 78 105-186 9-88 (759)
84 KOG0113 U1 small nuclear ribon 99.4 1.1E-12 2.4E-17 114.3 10.6 83 280-362 99-183 (335)
85 KOG0111 Cyclophilin-type pepti 99.4 1.9E-13 4.2E-18 113.4 5.3 87 280-366 8-96 (298)
86 smart00362 RRM_2 RNA recogniti 99.4 1.4E-12 3.1E-17 94.4 9.1 72 108-181 1-72 (72)
87 smart00362 RRM_2 RNA recogniti 99.4 1.7E-12 3.6E-17 94.1 9.2 72 284-355 1-72 (72)
88 KOG0125 Ataxin 2-binding prote 99.4 6.3E-13 1.4E-17 117.3 8.0 78 106-185 96-173 (376)
89 smart00360 RRM RNA recognition 99.4 2.6E-12 5.7E-17 92.7 8.4 71 111-181 1-71 (71)
90 KOG0130 RNA-binding protein RB 99.4 1.3E-12 2.9E-17 99.9 6.8 82 280-361 70-153 (170)
91 KOG0126 Predicted RNA-binding 99.4 2.3E-13 5.1E-18 109.7 2.0 107 244-360 7-115 (219)
92 PF13893 RRM_5: RNA recognitio 99.4 4.8E-12 1E-16 86.4 8.1 56 299-357 1-56 (56)
93 KOG0128 RNA-binding protein SA 99.4 1.9E-13 4.1E-18 135.1 1.6 232 105-364 570-819 (881)
94 cd00590 RRM RRM (RNA recogniti 99.3 1.1E-11 2.3E-16 90.3 9.6 73 284-356 1-74 (74)
95 cd00590 RRM RRM (RNA recogniti 99.3 1.5E-11 3.3E-16 89.5 9.5 74 108-182 1-74 (74)
96 smart00360 RRM RNA recognition 99.3 8.3E-12 1.8E-16 90.0 8.0 69 287-355 1-71 (71)
97 KOG0131 Splicing factor 3b, su 99.3 3.5E-12 7.7E-17 103.2 6.0 79 280-358 7-87 (203)
98 KOG0111 Cyclophilin-type pepti 99.3 3.4E-12 7.4E-17 106.1 6.1 83 104-186 8-90 (298)
99 KOG0108 mRNA cleavage and poly 99.3 6.4E-12 1.4E-16 120.0 8.6 79 107-185 19-97 (435)
100 KOG0132 RNA polymerase II C-te 99.3 7.2E-10 1.6E-14 108.9 21.4 78 282-363 421-498 (894)
101 KOG4307 RNA binding protein RB 99.2 1E-10 2.2E-15 113.1 12.6 163 189-357 314-511 (944)
102 smart00361 RRM_1 RNA recogniti 99.2 4.8E-11 1E-15 85.4 7.6 61 120-180 2-69 (70)
103 PF13893 RRM_5: RNA recognitio 99.2 8.4E-11 1.8E-15 80.2 7.9 56 123-183 1-56 (56)
104 KOG0116 RasGAP SH3 binding pro 99.2 1.4E-10 3.1E-15 110.1 12.0 79 283-362 289-369 (419)
105 KOG4660 Protein Mei2, essentia 99.2 6.6E-11 1.4E-15 112.3 9.4 72 104-180 73-144 (549)
106 smart00361 RRM_1 RNA recogniti 99.2 6.8E-11 1.5E-15 84.6 7.2 60 296-355 2-70 (70)
107 KOG0108 mRNA cleavage and poly 99.2 5.6E-11 1.2E-15 113.6 8.2 80 283-362 19-100 (435)
108 KOG1365 RNA-binding protein Fu 99.2 5.6E-11 1.2E-15 107.0 7.2 144 106-253 161-347 (508)
109 KOG0109 RNA-binding protein LA 99.2 4.7E-11 1E-15 103.9 6.3 74 283-362 3-76 (346)
110 KOG4307 RNA binding protein RB 99.2 2.5E-09 5.4E-14 103.7 18.6 139 104-247 309-493 (944)
111 COG0724 RNA-binding proteins ( 99.2 1.4E-10 3E-15 109.1 10.1 78 282-359 115-194 (306)
112 KOG0129 Predicted RNA-binding 99.1 8.3E-10 1.8E-14 104.1 13.4 169 102-341 255-432 (520)
113 KOG0146 RNA-binding protein ET 99.1 6.5E-11 1.4E-15 101.5 5.2 86 101-186 280-365 (371)
114 KOG4210 Nuclear localization s 99.1 3.2E-10 7E-15 103.6 9.7 177 105-362 87-266 (285)
115 KOG0415 Predicted peptidyl pro 99.1 1.6E-10 3.4E-15 103.2 6.2 83 103-185 236-318 (479)
116 KOG4206 Spliceosomal protein s 99.1 3.8E-10 8.2E-15 95.5 7.8 79 283-363 10-93 (221)
117 KOG0120 Splicing factor U2AF, 99.1 9.2E-10 2E-14 105.9 10.4 161 104-267 287-489 (500)
118 KOG4208 Nucleolar RNA-binding 99.0 7.5E-10 1.6E-14 92.0 8.2 81 105-185 48-129 (214)
119 KOG4454 RNA binding protein (R 99.0 5.1E-11 1.1E-15 99.3 1.0 133 104-341 7-144 (267)
120 KOG4661 Hsp27-ERE-TATA-binding 99.0 9.1E-10 2E-14 104.2 8.5 84 102-185 401-484 (940)
121 KOG0153 Predicted RNA-binding 99.0 1.3E-09 2.8E-14 97.5 8.5 77 279-359 225-302 (377)
122 KOG0415 Predicted peptidyl pro 99.0 6.1E-10 1.3E-14 99.5 6.2 83 280-362 237-321 (479)
123 KOG0132 RNA polymerase II C-te 99.0 1.2E-09 2.5E-14 107.5 8.0 75 105-185 420-494 (894)
124 KOG0112 Large RNA-binding prot 99.0 7E-10 1.5E-14 110.8 5.6 161 186-363 372-534 (975)
125 KOG4208 Nucleolar RNA-binding 98.9 3.8E-09 8.2E-14 87.9 7.3 79 282-360 49-130 (214)
126 KOG0128 RNA-binding protein SA 98.9 1.7E-10 3.7E-15 114.7 -0.9 136 104-253 665-800 (881)
127 KOG4661 Hsp27-ERE-TATA-binding 98.9 2.7E-09 5.9E-14 101.1 6.7 77 282-358 405-483 (940)
128 KOG4676 Splicing factor, argin 98.9 6E-10 1.3E-14 100.9 1.0 211 107-358 8-224 (479)
129 KOG1457 RNA binding protein (c 98.8 2.5E-08 5.5E-13 83.7 10.1 86 281-366 33-124 (284)
130 KOG0153 Predicted RNA-binding 98.8 1.5E-08 3.3E-13 90.8 8.0 77 103-185 225-302 (377)
131 KOG4205 RNA-binding protein mu 98.8 7.3E-09 1.6E-13 95.0 5.2 85 281-366 5-91 (311)
132 KOG0533 RRM motif-containing p 98.8 2.6E-08 5.7E-13 87.5 8.4 82 282-363 83-165 (243)
133 KOG0533 RRM motif-containing p 98.8 3.8E-08 8.3E-13 86.5 8.9 82 103-185 80-161 (243)
134 KOG0226 RNA-binding proteins [ 98.7 9.3E-09 2E-13 88.1 4.2 135 225-361 135-271 (290)
135 KOG0112 Large RNA-binding prot 98.7 1.6E-08 3.6E-13 101.3 5.2 161 101-270 367-531 (975)
136 PF04059 RRM_2: RNA recognitio 98.7 1.3E-07 2.8E-12 70.8 8.8 78 107-184 2-85 (97)
137 KOG1548 Transcription elongati 98.6 7.9E-08 1.7E-12 86.2 7.6 79 282-360 134-221 (382)
138 PF04059 RRM_2: RNA recognitio 98.6 2.3E-07 4.9E-12 69.5 8.5 78 283-360 2-87 (97)
139 KOG4209 Splicing factor RNPS1, 98.6 7.8E-08 1.7E-12 85.0 6.2 80 104-184 99-178 (231)
140 KOG4454 RNA binding protein (R 98.6 2.2E-08 4.7E-13 83.8 2.6 79 281-359 8-86 (267)
141 KOG0116 RasGAP SH3 binding pro 98.6 9E-08 2E-12 91.3 6.9 78 105-183 287-364 (419)
142 KOG0226 RNA-binding proteins [ 98.6 4.7E-08 1E-12 83.9 4.4 84 100-183 184-267 (290)
143 PF11608 Limkain-b1: Limkain b 98.6 3.1E-07 6.7E-12 64.9 7.7 70 107-186 3-77 (90)
144 PF11608 Limkain-b1: Limkain b 98.6 4.5E-07 9.8E-12 64.2 7.7 70 283-360 3-77 (90)
145 KOG0106 Alternative splicing f 98.5 1.6E-07 3.6E-12 80.6 5.8 73 283-361 2-74 (216)
146 KOG1995 Conserved Zn-finger pr 98.5 4.4E-07 9.5E-12 82.4 7.9 83 280-362 64-156 (351)
147 KOG2193 IGF-II mRNA-binding pr 98.5 3.9E-08 8.5E-13 90.2 0.8 155 187-360 2-157 (584)
148 KOG4209 Splicing factor RNPS1, 98.5 4.6E-07 9.9E-12 80.2 7.5 80 280-360 99-180 (231)
149 KOG4660 Protein Mei2, essentia 98.4 2E-07 4.3E-12 89.2 5.0 71 280-353 73-143 (549)
150 KOG3973 Uncharacterized conser 98.4 2.9E-06 6.3E-11 76.1 11.3 19 397-415 375-393 (465)
151 KOG4849 mRNA cleavage factor I 98.3 1.5E-05 3.3E-10 71.7 13.7 73 283-355 81-157 (498)
152 PF08777 RRM_3: RNA binding mo 98.3 2.2E-06 4.7E-11 66.0 6.1 71 283-357 2-77 (105)
153 KOG3152 TBP-binding protein, a 98.3 6.1E-07 1.3E-11 77.3 3.3 74 105-178 73-158 (278)
154 KOG0151 Predicted splicing reg 98.3 1.9E-06 4.2E-11 84.5 7.0 82 103-184 171-255 (877)
155 KOG0151 Predicted splicing reg 98.2 3.4E-06 7.5E-11 82.8 8.5 82 280-361 172-258 (877)
156 KOG1995 Conserved Zn-finger pr 98.2 1.6E-06 3.5E-11 78.8 4.2 83 105-187 65-155 (351)
157 PF08777 RRM_3: RNA binding mo 98.1 6.3E-06 1.4E-10 63.5 6.3 60 106-171 1-60 (105)
158 KOG0921 Dosage compensation co 98.1 2.5E-05 5.3E-10 79.4 11.8 10 229-238 901-910 (1282)
159 KOG1855 Predicted RNA-binding 97.9 0.00038 8.3E-09 64.9 13.7 66 280-345 229-309 (484)
160 KOG2193 IGF-II mRNA-binding pr 97.9 4.3E-06 9.4E-11 77.1 0.8 136 108-255 3-144 (584)
161 KOG3973 Uncharacterized conser 97.8 0.00015 3.3E-09 65.4 10.3 7 298-304 244-250 (465)
162 PF14605 Nup35_RRM_2: Nup53/35 97.8 5.6E-05 1.2E-09 50.1 5.7 52 283-339 2-53 (53)
163 COG5175 MOT2 Transcriptional r 97.8 5.3E-05 1.1E-09 68.0 6.1 88 107-194 115-212 (480)
164 KOG4849 mRNA cleavage factor I 97.8 4.3E-05 9.2E-10 68.9 5.4 79 106-184 80-160 (498)
165 KOG2314 Translation initiation 97.7 0.00015 3.2E-09 69.8 8.1 75 283-357 59-141 (698)
166 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00012 2.5E-09 48.6 4.9 52 107-165 2-53 (53)
167 KOG4210 Nuclear localization s 97.6 4.1E-05 9E-10 70.4 3.3 80 106-186 184-264 (285)
168 COG5175 MOT2 Transcriptional r 97.6 0.00016 3.4E-09 65.1 6.7 79 282-360 114-203 (480)
169 KOG2416 Acinus (induces apopto 97.5 0.00019 4.2E-09 69.5 6.8 77 104-186 442-522 (718)
170 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00054 1.2E-08 51.9 7.9 75 282-358 6-90 (100)
171 KOG0115 RNA-binding protein p5 97.5 0.00033 7.2E-09 60.9 6.7 92 160-255 6-97 (275)
172 PF08952 DUF1866: Domain of un 97.5 0.00061 1.3E-08 54.7 7.5 56 298-360 52-107 (146)
173 KOG2202 U2 snRNP splicing fact 97.4 7.8E-05 1.7E-09 64.9 2.2 64 297-360 83-148 (260)
174 KOG0115 RNA-binding protein p5 97.4 0.00041 8.8E-09 60.4 6.3 102 242-358 6-112 (275)
175 KOG2314 Translation initiation 97.4 0.00048 1E-08 66.4 6.9 77 105-182 57-140 (698)
176 KOG1996 mRNA splicing factor [ 97.3 0.0007 1.5E-08 59.9 6.6 63 296-358 300-365 (378)
177 KOG3152 TBP-binding protein, a 97.3 0.00018 3.9E-09 62.4 2.6 69 283-351 75-157 (278)
178 KOG2416 Acinus (induces apopto 97.2 0.00091 2E-08 65.0 6.9 79 278-360 440-522 (718)
179 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0016 3.5E-08 49.3 6.3 78 105-184 5-90 (100)
180 KOG1855 Predicted RNA-binding 97.1 0.00047 1E-08 64.3 3.8 68 105-172 230-310 (484)
181 KOG4676 Splicing factor, argin 97.0 0.00095 2.1E-08 61.5 5.0 77 283-360 8-89 (479)
182 KOG0129 Predicted RNA-binding 97.0 0.0036 7.8E-08 60.2 8.6 64 104-167 368-432 (520)
183 PF08952 DUF1866: Domain of un 96.9 0.0034 7.3E-08 50.6 6.7 76 101-185 22-106 (146)
184 KOG2318 Uncharacterized conser 96.6 0.011 2.4E-07 57.7 9.1 80 103-182 171-304 (650)
185 KOG2202 U2 snRNP splicing fact 96.6 0.00099 2.1E-08 58.2 1.8 63 121-184 83-146 (260)
186 PF08675 RNA_bind: RNA binding 96.5 0.016 3.5E-07 41.5 7.0 57 105-170 8-64 (87)
187 PF10309 DUF2414: Protein of u 96.3 0.022 4.8E-07 38.7 6.5 54 283-342 6-62 (62)
188 KOG1996 mRNA splicing factor [ 96.2 0.014 3.1E-07 51.9 6.4 64 120-183 300-364 (378)
189 PF10309 DUF2414: Protein of u 96.1 0.027 5.9E-07 38.2 6.1 54 107-168 6-62 (62)
190 PF03467 Smg4_UPF3: Smg-4/UPF3 96.1 0.0041 8.8E-08 53.0 2.5 71 105-175 6-82 (176)
191 KOG1924 RhoA GTPase effector D 95.9 0.054 1.2E-06 55.0 9.8 15 156-170 207-221 (1102)
192 PF08675 RNA_bind: RNA binding 95.9 0.043 9.3E-07 39.4 6.5 55 283-344 10-64 (87)
193 PF15023 DUF4523: Protein of u 95.8 0.05 1.1E-06 43.2 7.1 74 103-184 83-160 (166)
194 KOG2135 Proteins containing th 95.7 0.0057 1.2E-07 58.1 2.0 76 105-187 371-447 (526)
195 KOG1999 RNA polymerase II tran 95.6 0.01 2.2E-07 61.6 3.6 29 146-174 208-236 (1024)
196 PF15023 DUF4523: Protein of u 95.6 0.083 1.8E-06 42.0 7.7 72 281-358 85-160 (166)
197 KOG2135 Proteins containing th 95.6 0.0082 1.8E-07 57.1 2.6 74 283-361 373-447 (526)
198 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.034 7.4E-07 47.4 6.1 78 282-359 7-97 (176)
199 PF07576 BRAP2: BRCA1-associat 95.5 0.13 2.7E-06 39.9 8.5 67 283-349 14-81 (110)
200 KOG2591 c-Mpl binding protein, 95.5 0.019 4.2E-07 55.7 4.7 70 105-181 174-247 (684)
201 KOG1924 RhoA GTPase effector D 95.4 0.13 2.7E-06 52.5 10.3 12 119-130 84-95 (1102)
202 PF04847 Calcipressin: Calcipr 95.3 0.059 1.3E-06 46.1 6.5 62 295-360 8-71 (184)
203 PRK11634 ATP-dependent RNA hel 95.1 0.36 7.8E-06 50.4 13.0 60 292-358 497-561 (629)
204 PF07576 BRAP2: BRCA1-associat 94.7 0.25 5.3E-06 38.3 8.0 68 106-175 12-81 (110)
205 KOG0804 Cytoplasmic Zn-finger 94.7 0.077 1.7E-06 50.5 6.1 74 100-175 68-142 (493)
206 PF04931 DNA_pol_phi: DNA poly 94.3 0.027 5.8E-07 60.4 2.7 7 123-129 741-747 (784)
207 KOG4285 Mitotic phosphoprotein 94.2 0.35 7.6E-06 43.6 8.8 74 283-362 198-272 (350)
208 PF04147 Nop14: Nop14-like fam 94.1 0.096 2.1E-06 56.4 6.2 14 118-131 426-439 (840)
209 KOG2068 MOT2 transcription fac 94.1 0.021 4.6E-07 52.3 1.1 78 283-360 78-163 (327)
210 KOG2068 MOT2 transcription fac 93.8 0.031 6.7E-07 51.3 1.5 80 107-186 78-163 (327)
211 KOG0804 Cytoplasmic Zn-finger 93.3 0.21 4.6E-06 47.6 6.1 68 282-349 74-142 (493)
212 PF03880 DbpA: DbpA RNA bindin 93.2 0.58 1.3E-05 33.5 7.1 59 116-183 11-74 (74)
213 KOG2591 c-Mpl binding protein, 93.1 0.41 8.9E-06 46.9 7.9 100 158-265 147-247 (684)
214 PF03880 DbpA: DbpA RNA bindin 92.9 0.41 9E-06 34.2 6.0 59 292-357 11-74 (74)
215 PF04847 Calcipressin: Calcipr 92.7 0.26 5.7E-06 42.2 5.4 60 119-184 8-69 (184)
216 KOG2253 U1 snRNP complex, subu 92.7 0.081 1.8E-06 52.9 2.6 71 280-357 38-108 (668)
217 PF10567 Nab6_mRNP_bdg: RNA-re 92.6 4.3 9.3E-05 36.9 12.9 158 187-345 16-214 (309)
218 KOG4483 Uncharacterized conser 92.4 0.26 5.6E-06 46.2 5.3 56 105-167 390-446 (528)
219 KOG4285 Mitotic phosphoprotein 92.1 0.59 1.3E-05 42.2 7.0 73 106-186 197-270 (350)
220 KOG4574 RNA-binding protein (c 92.1 0.099 2.1E-06 53.6 2.5 73 285-361 301-375 (1007)
221 KOG2236 Uncharacterized conser 92.1 7.2 0.00016 37.8 14.5 13 232-244 261-273 (483)
222 PF05918 API5: Apoptosis inhib 91.9 0.047 1E-06 54.7 0.0 11 351-361 456-466 (556)
223 PF07292 NID: Nmi/IFP 35 domai 91.7 0.18 3.8E-06 37.2 2.8 57 151-208 1-74 (88)
224 KOG4574 RNA-binding protein (c 90.7 0.15 3.2E-06 52.5 2.1 70 109-184 301-372 (1007)
225 PF05285 SDA1: SDA1; InterPro 90.0 0.23 4.9E-06 47.1 2.6 8 118-125 190-197 (324)
226 KOG1999 RNA polymerase II tran 89.7 0.16 3.4E-06 53.2 1.4 17 289-305 446-462 (1024)
227 PF05918 API5: Apoptosis inhib 89.0 0.12 2.6E-06 51.9 0.0 12 116-127 188-199 (556)
228 PF11767 SET_assoc: Histone ly 88.9 2.5 5.3E-05 29.3 6.4 56 292-354 10-65 (66)
229 KOG2318 Uncharacterized conser 88.7 1.7 3.6E-05 43.2 7.4 78 280-357 172-305 (650)
230 KOG2253 U1 snRNP complex, subu 88.2 0.32 7E-06 48.8 2.3 70 104-182 38-107 (668)
231 PF11767 SET_assoc: Histone ly 87.6 2.8 6.2E-05 29.0 6.0 55 117-180 11-65 (66)
232 PF04147 Nop14: Nop14-like fam 87.1 0.8 1.7E-05 49.5 4.7 9 350-358 743-751 (840)
233 KOG2044 5'-3' exonuclease HKE1 85.9 7.8 0.00017 40.4 10.4 15 233-247 634-648 (931)
234 PF05285 SDA1: SDA1; InterPro 84.3 0.7 1.5E-05 43.8 2.4 7 198-204 231-237 (324)
235 KOG2038 CAATT-binding transcri 84.1 1.7 3.6E-05 44.8 4.9 19 109-127 958-976 (988)
236 KOG2141 Protein involved in hi 80.3 1.8 3.9E-05 44.2 3.6 28 323-350 622-649 (822)
237 KOG4019 Calcineurin-mediated s 79.6 2.3 5.1E-05 35.6 3.4 75 283-361 11-91 (193)
238 PF02724 CDC45: CDC45-like pro 79.3 1.5 3.2E-05 45.8 2.8 14 239-252 400-413 (622)
239 KOG2295 C2H2 Zn-finger protein 78.4 0.43 9.3E-06 46.8 -1.3 74 105-178 230-303 (648)
240 PF02724 CDC45: CDC45-like pro 77.9 1.6 3.4E-05 45.6 2.5 16 237-252 395-410 (622)
241 KOG2141 Protein involved in hi 77.2 2.2 4.7E-05 43.7 3.1 10 291-300 553-562 (822)
242 KOG2891 Surface glycoprotein [ 77.0 5 0.00011 35.9 4.9 36 281-316 148-195 (445)
243 COG4547 CobT Cobalamin biosynt 74.7 3.7 8.1E-05 39.7 3.8 11 172-182 425-435 (620)
244 PF07530 PRE_C2HC: Associated 74.6 5.3 0.00011 28.0 3.6 63 121-186 2-65 (68)
245 PRK14548 50S ribosomal protein 74.4 11 0.00023 27.7 5.3 58 284-342 22-81 (84)
246 PF07292 NID: Nmi/IFP 35 domai 74.2 3.4 7.4E-05 30.5 2.7 70 233-303 1-73 (88)
247 KOG4019 Calcineurin-mediated s 73.8 3.2 7E-05 34.8 2.8 75 106-186 10-90 (193)
248 TIGR03636 L23_arch archaeal ri 73.7 11 0.00024 27.0 5.2 57 284-341 15-73 (77)
249 PF14111 DUF4283: Domain of un 70.0 3.9 8.4E-05 33.9 2.6 95 230-327 55-150 (153)
250 COG4547 CobT Cobalamin biosynt 68.7 7.5 0.00016 37.7 4.4 17 107-123 317-333 (620)
251 KOG2891 Surface glycoprotein [ 68.3 1.7 3.7E-05 38.7 0.1 68 106-173 149-247 (445)
252 PF03468 XS: XS domain; Inter 68.3 2.6 5.7E-05 33.1 1.1 50 283-333 9-67 (116)
253 KOG2567 Uncharacterized conser 67.7 11 0.00024 30.9 4.5 7 403-409 121-127 (179)
254 smart00596 PRE_C2HC PRE_C2HC d 67.6 8.1 0.00017 26.9 3.2 63 121-186 2-65 (69)
255 TIGR01651 CobT cobaltochelatas 67.2 10 0.00022 38.6 5.1 14 106-119 295-308 (600)
256 KOG0262 RNA polymerase I, larg 66.6 6.7 0.00014 42.9 3.9 11 298-308 1541-1551(1640)
257 PF09073 BUD22: BUD22; InterP 66.5 9 0.0002 38.1 4.7 23 331-353 408-430 (432)
258 KOG4213 RNA-binding protein La 64.0 8.7 0.00019 32.2 3.3 57 107-167 112-169 (205)
259 PF02714 DUF221: Domain of unk 63.8 14 0.0003 35.2 5.3 57 151-209 1-57 (325)
260 PRK14548 50S ribosomal protein 63.8 19 0.00042 26.3 4.8 57 108-167 22-80 (84)
261 KOG1295 Nonsense-mediated deca 63.7 7.5 0.00016 36.8 3.3 68 106-173 7-77 (376)
262 TIGR02542 B_forsyth_147 Bacter 63.1 32 0.00068 26.5 5.9 108 112-240 9-129 (145)
263 PF10567 Nab6_mRNP_bdg: RNA-re 62.3 14 0.00031 33.7 4.7 78 282-359 15-107 (309)
264 PF15513 DUF4651: Domain of un 61.1 17 0.00037 24.7 3.7 20 297-316 9-28 (62)
265 KOG4483 Uncharacterized conser 59.8 51 0.0011 31.6 7.8 54 282-340 391-445 (528)
266 TIGR03636 L23_arch archaeal ri 59.1 28 0.00061 25.0 4.8 57 108-167 15-73 (77)
267 KOG2773 Apoptosis antagonizing 57.9 9.3 0.0002 37.1 2.9 6 349-354 446-451 (483)
268 KOG3262 H/ACA small nucleolar 56.6 55 0.0012 27.7 6.7 17 296-312 88-104 (215)
269 PF12782 Innate_immun: Inverte 55.9 47 0.001 28.5 6.4 6 335-340 13-18 (311)
270 KOG4410 5-formyltetrahydrofola 55.4 13 0.00029 33.5 3.3 49 105-159 329-378 (396)
271 COG1512 Beta-propeller domains 54.0 16 0.00036 33.4 3.7 33 176-208 101-134 (271)
272 PF03468 XS: XS domain; Inter 53.5 12 0.00025 29.5 2.4 55 108-165 10-74 (116)
273 KOG0650 WD40 repeat nucleolar 53.4 26 0.00056 35.5 5.1 13 107-119 119-131 (733)
274 TIGR00927 2A1904 K+-dependent 52.1 9.5 0.00021 41.0 2.1 10 107-116 905-914 (1096)
275 KOG2295 C2H2 Zn-finger protein 50.4 3.8 8.3E-05 40.5 -0.9 71 282-352 231-303 (648)
276 KOG0262 RNA polymerase I, larg 49.8 15 0.00032 40.4 3.1 10 202-211 1521-1530(1640)
277 KOG4761 Proteasome formation i 49.7 1.7E+02 0.0036 26.2 8.9 13 440-452 249-261 (266)
278 PHA03169 hypothetical protein; 48.1 60 0.0013 30.8 6.3 8 203-210 303-310 (413)
279 PF14111 DUF4283: Domain of un 48.0 11 0.00024 31.1 1.6 96 117-219 28-137 (153)
280 KOG4213 RNA-binding protein La 47.4 25 0.00054 29.6 3.4 55 283-341 112-169 (205)
281 KOG1308 Hsp70-interacting prot 47.4 58 0.0013 30.8 6.1 16 148-163 154-169 (377)
282 PF03896 TRAP_alpha: Transloco 47.1 12 0.00026 34.6 1.7 7 107-113 85-91 (285)
283 COG5593 Nucleic-acid-binding p 46.9 19 0.00042 35.7 3.2 20 108-127 800-819 (821)
284 KOG4410 5-formyltetrahydrofola 44.9 53 0.0011 29.9 5.3 46 283-332 331-377 (396)
285 PF04202 Mfp-3: Foot protein 3 44.4 48 0.001 22.6 3.7 10 471-480 61-70 (71)
286 TIGR01651 CobT cobaltochelatas 44.4 27 0.00058 35.7 3.8 8 297-304 543-550 (600)
287 KOG1295 Nonsense-mediated deca 44.2 32 0.0007 32.8 4.1 65 283-347 8-77 (376)
288 PF11823 DUF3343: Protein of u 43.8 1.1E+02 0.0024 21.5 6.2 24 150-173 3-26 (73)
289 PTZ00191 60S ribosomal protein 43.2 70 0.0015 26.2 5.3 56 284-340 83-140 (145)
290 KOG3130 Uncharacterized conser 43.1 28 0.0006 33.3 3.4 21 110-130 354-374 (514)
291 KOG4264 Nucleo-cytoplasmic pro 42.4 18 0.0004 35.7 2.3 9 324-332 443-451 (694)
292 KOG0772 Uncharacterized conser 42.3 18 0.00039 35.8 2.2 20 99-118 172-191 (641)
293 PF09073 BUD22: BUD22; InterP 42.2 40 0.00086 33.6 4.7 7 159-165 321-327 (432)
294 KOG0699 Serine/threonine prote 41.0 18 0.00038 34.1 1.8 13 292-304 511-523 (542)
295 KOG4365 Uncharacterized conser 40.9 4.3 9.2E-05 38.9 -2.1 77 283-360 4-82 (572)
296 TIGR00927 2A1904 K+-dependent 39.8 19 0.00042 38.8 2.1 7 150-156 933-939 (1096)
297 KOG4365 Uncharacterized conser 39.7 5.2 0.00011 38.4 -1.7 77 107-184 4-80 (572)
298 COG5193 LHP1 La protein, small 39.2 16 0.00034 35.0 1.2 61 105-165 173-243 (438)
299 PF03276 Gag_spuma: Spumavirus 38.9 4.4E+02 0.0095 26.8 13.2 10 344-353 427-436 (582)
300 KOG1060 Vesicle coat complex A 38.7 50 0.0011 34.8 4.7 8 151-158 772-779 (968)
301 KOG4008 rRNA processing protei 38.1 28 0.0006 30.7 2.5 35 280-314 38-72 (261)
302 KOG4264 Nucleo-cytoplasmic pro 37.7 27 0.00059 34.5 2.6 13 152-164 213-225 (694)
303 PF07530 PRE_C2HC: Associated 36.0 94 0.002 21.7 4.5 61 297-360 2-65 (68)
304 COG5638 Uncharacterized conser 35.6 1.1E+02 0.0024 29.5 6.1 78 280-357 144-295 (622)
305 KOG3118 Disrupter of silencing 35.4 12 0.00026 36.6 -0.1 27 104-130 188-214 (517)
306 PF05470 eIF-3c_N: Eukaryotic 34.8 35 0.00077 35.4 3.1 10 332-341 516-525 (595)
307 cd04889 ACT_PDH-BS-like C-term 33.3 1.3E+02 0.0029 19.4 4.9 42 297-339 13-55 (56)
308 PF02714 DUF221: Domain of unk 33.1 44 0.00095 31.7 3.4 34 325-360 1-34 (325)
309 PF08734 GYD: GYD domain; Int 32.0 1.9E+02 0.004 21.5 5.8 46 296-343 22-68 (91)
310 KOG4364 Chromatin assembly fac 31.5 32 0.0007 35.2 2.1 12 12-23 520-531 (811)
311 PF05764 YL1: YL1 nuclear prot 30.4 43 0.00092 30.3 2.6 9 196-204 183-191 (240)
312 KOG4008 rRNA processing protei 30.2 38 0.00082 29.9 2.0 34 103-136 37-70 (261)
313 PF11823 DUF3343: Protein of u 28.9 66 0.0014 22.7 2.9 27 323-349 2-28 (73)
314 PF04626 DEC-1_C: Dec-1 protei 28.8 58 0.0013 25.1 2.6 14 453-466 80-93 (132)
315 PF07423 DUF1510: Protein of u 28.2 59 0.0013 28.7 3.0 10 118-127 150-159 (217)
316 PF05764 YL1: YL1 nuclear prot 27.5 46 0.001 30.1 2.3 6 294-299 185-190 (240)
317 PTZ00191 60S ribosomal protein 27.1 1.5E+02 0.0031 24.4 4.7 54 109-165 84-139 (145)
318 PF14026 DUF4242: Protein of u 26.9 2.4E+02 0.0052 20.2 7.2 61 285-346 3-70 (77)
319 PF00403 HMA: Heavy-metal-asso 26.9 2E+02 0.0042 19.1 5.9 54 284-341 1-58 (62)
320 KOG2192 PolyC-binding hnRNP-K 26.6 4.9E+02 0.011 23.6 8.2 8 201-208 100-107 (390)
321 COG1512 Beta-propeller domains 26.3 92 0.002 28.7 3.9 11 289-299 119-129 (271)
322 KOG0338 ATP-dependent RNA heli 26.3 27 0.00059 34.8 0.6 19 187-205 283-301 (691)
323 PF07423 DUF1510: Protein of u 26.2 53 0.0012 29.0 2.3 13 158-170 152-164 (217)
324 PRK11901 hypothetical protein; 25.4 2E+02 0.0042 27.2 5.8 67 99-170 238-306 (327)
325 KOG1980 Uncharacterized conser 25.1 25 0.00055 35.9 0.2 17 122-138 466-482 (754)
326 KOG2266 Chromatin-associated p 24.2 93 0.002 30.7 3.7 161 6-168 83-265 (594)
327 KOG2393 Transcription initiati 24.1 60 0.0013 32.5 2.5 18 287-304 478-495 (555)
328 KOG2236 Uncharacterized conser 24.0 7.3E+02 0.016 24.7 9.9 8 109-116 187-194 (483)
329 COG5638 Uncharacterized conser 23.4 1.7E+02 0.0038 28.2 5.2 39 104-142 144-187 (622)
330 PF15063 TC1: Thyroid cancer p 23.2 41 0.00089 23.8 0.9 50 283-342 26-78 (79)
331 KOG2187 tRNA uracil-5-methyltr 22.8 85 0.0018 31.6 3.2 42 322-363 63-104 (534)
332 cd04908 ACT_Bt0572_1 N-termina 22.8 2.5E+02 0.0054 18.9 8.0 49 295-346 14-63 (66)
333 PF05470 eIF-3c_N: Eukaryotic 22.6 53 0.0011 34.1 1.9 8 243-250 389-396 (595)
334 cd04904 ACT_AAAH ACT domain of 22.5 2.8E+02 0.0061 19.4 5.8 50 295-344 13-65 (74)
335 COG5271 MDN1 AAA ATPase contai 22.1 95 0.0021 36.8 3.6 20 323-342 4409-4428(4600)
336 PF11702 DUF3295: Protein of u 21.6 55 0.0012 32.7 1.7 7 46-52 309-315 (507)
337 PRK11230 glycolate oxidase sub 20.6 4.1E+02 0.0089 27.1 7.8 65 105-170 188-256 (499)
338 KOG0156 Cytochrome P450 CYP2 s 20.1 1.8E+02 0.0039 29.6 5.0 58 110-177 36-96 (489)
339 KOG2897 DNA-binding protein YL 20.0 42 0.00091 31.9 0.5 66 3-69 26-91 (390)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.7e-59 Score=422.97 Aligned_cols=258 Identities=43% Similarity=0.757 Sum_probs=247.0
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCc-CCeEEEE
Q 011574 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL-KGKTIRC 180 (482)
Q Consensus 102 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~-~g~~l~v 180 (482)
.++.+|.|||+.||.++.|++|..||.+.|+|.+++|++|+.+|.++|||||.|++++.|++||+.||+.+| .|+.|.|
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 447899999999999999999999999999999999999999999999999999999999999999999998 6999999
Q ss_pred eecCCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCC
Q 011574 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN 260 (482)
Q Consensus 181 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~ 260 (482)
..+..+++|||+|+|+++++++|.+.|++.++.|..|.|...|....++||||||+|.++.+|..|.++|....+.+.+.
T Consensus 159 c~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn 238 (506)
T KOG0117|consen 159 CVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGN 238 (506)
T ss_pred EEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 011574 261 TPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (482)
Q Consensus 261 ~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~ 340 (482)
.+.|.||.|...+... .....+.|||+||+.++|++.|+++|++||.|++|+.++ .||||.|.+.++|.+|++
T Consensus 239 ~~tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r------DYaFVHf~eR~davkAm~ 311 (506)
T KOG0117|consen 239 AITVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR------DYAFVHFAEREDAVKAMK 311 (506)
T ss_pred cceeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc------ceeEEeecchHHHHHHHH
Confidence 9999999999988877 447889999999999999999999999999999998875 489999999999999999
Q ss_pred HcCCceeCCcEEEEEEccCCCCCCCC
Q 011574 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366 (482)
Q Consensus 341 ~l~~~~~~g~~l~v~~a~~~~~~~~~ 366 (482)
.+|+..|+|..|.|.+|+|..+++..
T Consensus 312 ~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 312 ETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred HhcCceecCceEEEEecCChhhhccc
Confidence 99999999999999999998876654
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=3e-48 Score=380.78 Aligned_cols=252 Identities=35% Similarity=0.651 Sum_probs=227.2
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcC-CeEEEEe
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCS 181 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~-g~~l~v~ 181 (482)
+...++|||+|||+++++++|+++|++||.|.+|+|+++ .+++++|||||+|.+.++|++||+.||+..|. ++.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 445799999999999999999999999999999999999 77999999999999999999999999999885 8999999
Q ss_pred ecCCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCC
Q 011574 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (482)
Q Consensus 182 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (482)
.+..+++|||+|||..+++++|.++|..++..+..+.++..+....++++||||+|.+..+|..|++.|....+.+.++.
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 99999999999999999999999999999865766666655556778999999999999999999999987778889999
Q ss_pred CeeeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcc--cceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHH
Q 011574 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (482)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~ 339 (482)
|.|.|+.+........ ....++|||+||+..+|+++|+++|++| |.|++|.+++ +||||+|.+.++|.+||
T Consensus 214 I~VdwA~p~~~~d~~~-~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r------gfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDV-MAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR------DYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEEEeecccccccccc-cccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec------CeEEEEeCCHHHHHHHH
Confidence 9999998875443222 2345789999999999999999999999 9999997753 69999999999999999
Q ss_pred HHcCCceeCCcEEEEEEccCCCC
Q 011574 340 KDTEKYEIDGQVLEVVLAKPQTD 362 (482)
Q Consensus 340 ~~l~~~~~~g~~l~v~~a~~~~~ 362 (482)
+.||+..|.|+.|+|.|++++..
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCc
Confidence 99999999999999999987654
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=4.4e-45 Score=353.31 Aligned_cols=256 Identities=22% Similarity=0.414 Sum_probs=224.3
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
..++|||+|||.++|+++|+++|+.||+|.+|+|++++.+|+++|||||+|.+.++|.+||+.||+..|.|+.|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C------cceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccC
Q 011574 185 T------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258 (482)
Q Consensus 185 ~------~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 258 (482)
+ .++|||+|||..+++++|+.+|+.||. |..+.++.+. .++.+++||||.|.+.++|..|++.|++..+...
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~~~~~~~~-~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ-IITSRILSDN-VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCC-EEEEEEEecC-CCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 3 458999999999999999999999998 8888888873 5678999999999999999999999998766555
Q ss_pred CCCCeeeecCCCCCCCc---------------------------------------------------------------
Q 011574 259 GNTPTISWADPKSTPDH--------------------------------------------------------------- 275 (482)
Q Consensus 259 ~~~~~v~~~~~~~~~~~--------------------------------------------------------------- 275 (482)
...+.+.|+........
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQH 239 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccc
Confidence 56677777643321000
Q ss_pred -----------------------cccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeC
Q 011574 276 -----------------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYA 330 (482)
Q Consensus 276 -----------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~ 330 (482)
........+|||+|||+.+++++|+++|++||.|++|+|+.+.. +. ||||||+|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~ 319 (352)
T TIGR01661 240 AAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMT 319 (352)
T ss_pred ccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEEC
Confidence 00001123699999999999999999999999999999998874 44 999999999
Q ss_pred CHHHHHHHHHHcCCceeCCcEEEEEEccCCCC
Q 011574 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (482)
Q Consensus 331 ~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 362 (482)
+.++|.+||..|||..|+||.|+|.|+..+..
T Consensus 320 ~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 320 NYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999999999999987753
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=5.3e-43 Score=357.89 Aligned_cols=254 Identities=29% Similarity=0.519 Sum_probs=222.0
Q ss_pred CEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCCc
Q 011574 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~~ 186 (482)
.+|||+|||+++|+++|+++|++||.|.+|+|+++..|++++|||||+|.+.++|.+||..+++..|.|+.|+|.|+...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999775310
Q ss_pred --------------------------------------------------------------------------------
Q 011574 187 -------------------------------------------------------------------------------- 186 (482)
Q Consensus 187 -------------------------------------------------------------------------------- 186 (482)
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence
Q ss_pred ------------------ceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHH
Q 011574 187 ------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248 (482)
Q Consensus 187 ------------------~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~ 248 (482)
++|||+||+..+++++|+++|+.||. |..+.++++ ..+.+++||||.|.+.++|.+|++
T Consensus 161 v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~-i~~~~i~~~--~~g~~~G~afV~F~~~e~A~~Av~ 237 (562)
T TIGR01628 161 VGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE-ITSAAVMKD--GSGRSRGFAFVNFEKHEDAAKAVE 237 (562)
T ss_pred EeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC-EEEEEEEEC--CCCCcccEEEEEECCHHHHHHHHH
Confidence 13889999999999999999999998 888888887 357889999999999999999999
Q ss_pred HHhccccccC--CCCCeeeecCCCCCCCc------------cccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEc
Q 011574 249 KMLNANFKLD--GNTPTISWADPKSTPDH------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVM 314 (482)
Q Consensus 249 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i 314 (482)
.+++..+... ++.+.+.++........ ........+|||+||+..+|+++|+++|++||.|++|+|
T Consensus 238 ~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i 317 (562)
T TIGR01628 238 EMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKV 317 (562)
T ss_pred HhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEE
Confidence 9987654322 77888887765543210 111234578999999999999999999999999999999
Q ss_pred CCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCCCC
Q 011574 315 PPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (482)
Q Consensus 315 ~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 363 (482)
+.+..+. +|||||+|.+.++|.+|+..||+..|.|++|.|.+|..+..+
T Consensus 318 ~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 318 MLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred EECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 9987666 999999999999999999999999999999999999877544
No 5
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3e-42 Score=289.74 Aligned_cols=254 Identities=23% Similarity=0.412 Sum_probs=227.4
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
..+.|.|.-||..+|+++|+.+|...|+|.+|++++|+.+|.+.||+||.|.++++|++|+..|||..|..+.|+|.+++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cc------ceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccC
Q 011574 185 TK------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258 (482)
Q Consensus 185 ~~------~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 258 (482)
+. .+|||.+||+.+|..+|..+|++||. |-..+|+.| ..++.+||.+||.|....+|..|++.|++..-.-.
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr-IItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR-IITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhhh-hhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 75 58999999999999999999999998 555666666 57799999999999999999999999999877777
Q ss_pred CCCCeeeecCCCCCCCccc---------------------------------------------------------cccC
Q 011574 259 GNTPTISWADPKSTPDHSA---------------------------------------------------------AASQ 281 (482)
Q Consensus 259 ~~~~~v~~~~~~~~~~~~~---------------------------------------------------------~~~~ 281 (482)
...|.|+++.......... ....
T Consensus 198 tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~ 277 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG 277 (360)
T ss_pred CCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCC
Confidence 7788888875542211000 0111
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
..+|||-||.+++.+.-|+++|.+||.|+.|+|++|..+. |||+||.+.+-++|..||..|||..+.+|.|.|+|...
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 4789999999999999999999999999999999998855 99999999999999999999999999999999999865
Q ss_pred C
Q 011574 360 Q 360 (482)
Q Consensus 360 ~ 360 (482)
+
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 4
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-39 Score=272.31 Aligned_cols=226 Identities=21% Similarity=0.397 Sum_probs=189.8
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHH-HhCCCCcCCeEEEEeec
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID-ELHSKELKGKTIRCSLS 183 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~-~l~~~~~~g~~l~v~~~ 183 (482)
..+||||+||..++|++-|..||++.|.|..++|+.+.. + +..|.. ....+....++
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~-~---------------v~wa~~p~nQsk~t~~~h------ 62 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL-K---------------VNWATAPGNQSKPTSNQH------ 62 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh-c---------------cccccCcccCCCCccccc------
Confidence 458999999999999999999999999999999988722 0 000000 00111111111
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCe
Q 011574 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (482)
Q Consensus 184 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (482)
--+||+.|...++.+.|++.|.+||+ |..++|++| ..+++++||+||.|.+..+|+.|+..|+++ .|..|.|+
T Consensus 63 ---fhvfvgdls~eI~~e~lr~aF~pFGe-vS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq--WlG~R~IR 135 (321)
T KOG0148|consen 63 ---FHVFVGDLSPEIDNEKLREAFAPFGE-VSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQMNGQ--WLGRRTIR 135 (321)
T ss_pred ---eeEEehhcchhcchHHHHHHhccccc-cccceEeec-ccCCcccceeEEeccchHHHHHHHHHhCCe--eeccceee
Confidence 24789999999999999999999999 999999999 588999999999999999999999999987 78899999
Q ss_pred eeecCCCCCCCc----------cccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHH
Q 011574 264 ISWADPKSTPDH----------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERS 333 (482)
Q Consensus 264 v~~~~~~~~~~~----------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e 333 (482)
..|+..+..... .......++|||+||+..+|+++|++.|++||.|..|+|.+++ ||+||.|.+.|
T Consensus 136 TNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q----GYaFVrF~tkE 211 (321)
T KOG0148|consen 136 TNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ----GYAFVRFETKE 211 (321)
T ss_pred ccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc----ceEEEEecchh
Confidence 999987753221 1123457899999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHcCCceeCCcEEEEEEccCCCCC
Q 011574 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (482)
Q Consensus 334 ~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 363 (482)
+|.+||..+|+..|.|..++|.|.+.....
T Consensus 212 aAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 212 AAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred hHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 999999999999999999999998765443
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=7.9e-37 Score=304.07 Aligned_cols=241 Identities=22% Similarity=0.267 Sum_probs=203.5
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHh--CCCCcCCeEEEEeec
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL--HSKELKGKTIRCSLS 183 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l--~~~~~~g~~l~v~~~ 183 (482)
+++|||+|||+++|+++|+++|+.||.|.+|.++++ +++|||+|.+.++|.+|++.+ ++..|.|+.|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 578999999999999999999999999999999864 579999999999999999864 678899999999986
Q ss_pred CCc------------------ceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHH
Q 011574 184 ETK------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245 (482)
Q Consensus 184 ~~~------------------~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~ 245 (482)
... .+|||.||++.+++++|+++|+.||. |..|.++++. .+++|||+|.+.++|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~-V~~v~i~~~~-----~~~~afVef~~~~~A~~ 149 (481)
T TIGR01649 76 TSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGK-VLRIVTFTKN-----NVFQALVEFESVNSAQH 149 (481)
T ss_pred CCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCC-EEEEEEEecC-----CceEEEEEECCHHHHHH
Confidence 421 26899999999999999999999998 9999888752 24689999999999999
Q ss_pred HHHHHhccccccCCCCCeeeecCCCCCC--------------------C----------c--------------------
Q 011574 246 SRQKMLNANFKLDGNTPTISWADPKSTP--------------------D----------H-------------------- 275 (482)
Q Consensus 246 a~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~----------~-------------------- 275 (482)
|++.|++..+.-..+.+.|.|+.+.... . .
T Consensus 150 A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 229 (481)
T TIGR01649 150 AKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHG 229 (481)
T ss_pred HHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCC
Confidence 9999999876544445555555431100 0 0
Q ss_pred ---------------------------------------cccccCcceEEEecCCC-CCCHHHHHHHHhcccceeEEEcC
Q 011574 276 ---------------------------------------SAAASQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMP 315 (482)
Q Consensus 276 ---------------------------------------~~~~~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~v~~v~i~ 315 (482)
.......++|||+||+. .+|+++|+++|+.||.|.+|+|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~ 309 (481)
T TIGR01649 230 GPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFM 309 (481)
T ss_pred CCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 00012456999999997 69999999999999999999998
Q ss_pred CCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCC
Q 011574 316 PGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (482)
Q Consensus 316 ~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 361 (482)
.++ ++||||+|.+.++|..||..||+..|.|++|+|.+++...
T Consensus 310 ~~~---~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 310 KNK---KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred eCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 864 5899999999999999999999999999999999986553
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=3.2e-36 Score=301.33 Aligned_cols=249 Identities=25% Similarity=0.411 Sum_probs=213.9
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||..+|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|| .|++..|.|++|.|..+
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEeec
Confidence 45789999999999999999999999999999999999999999999999999999999999 58999999999999875
Q ss_pred CC------------------cceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHH
Q 011574 184 ET------------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245 (482)
Q Consensus 184 ~~------------------~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~ 245 (482)
.. .++|||+|||..+++++|+++|+.||. |..|.++.++ .++.+++||||.|.+.++|..
T Consensus 166 ~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~-i~~v~~~~d~-~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 166 QAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGD-IEDVQLHRDP-ETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred chhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEEEcC-CCCccceEEEEEECCHHHHHH
Confidence 31 268999999999999999999999998 9999999984 567899999999999999999
Q ss_pred HHHHHhccccccCCCCCeeeecCCCCCCC---------------------------------------------------
Q 011574 246 SRQKMLNANFKLDGNTPTISWADPKSTPD--------------------------------------------------- 274 (482)
Q Consensus 246 a~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------------------------------------- 274 (482)
|+..|++ +.+.++.|.|.|+.......
T Consensus 244 A~~~l~g--~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T TIGR01622 244 ALEVMNG--FELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIAL 321 (457)
T ss_pred HHHhcCC--cEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhh
Confidence 9999987 56788999998853210000
Q ss_pred -----------------------------c----cccccCcceEEEecCCCCCC----------HHHHHHHHhcccceeE
Q 011574 275 -----------------------------H----SAAASQVKALYVKNIPDNTS----------TEKIKELFQRHGEVTK 311 (482)
Q Consensus 275 -----------------------------~----~~~~~~~~~l~v~nlp~~~t----------~~~l~~~F~~~G~v~~ 311 (482)
. .......++|+|.||....+ .++|++.|++||.|+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~ 401 (457)
T TIGR01622 322 MQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVH 401 (457)
T ss_pred hccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeE
Confidence 0 00113357899999965444 2689999999999999
Q ss_pred EEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 312 VVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 312 v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
|.|..... .|++||+|.++++|.+|++.|||..|+|+.|.|.+...
T Consensus 402 v~v~~~~~--~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 402 IYVDTKNS--AGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred EEEeCCCC--ceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 99874432 59999999999999999999999999999999999753
No 9
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.9e-36 Score=280.16 Aligned_cols=252 Identities=25% Similarity=0.483 Sum_probs=220.4
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
++.||||++||+.++.++|.++|+.+|+|..+.++.++.++.++||+||.|.-.+++++|++.+++..|.|+.|+|.++.
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C--------------------------------cceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcce
Q 011574 185 T--------------------------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGF 232 (482)
Q Consensus 185 ~--------------------------------~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~ 232 (482)
. +.+|+|+|||+.+...+|..+|+.||. |..|.|++. ..++-.||
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~-V~Ei~IP~k--~dgklcGF 160 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK-VVEIVIPRK--KDGKLCGF 160 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcce-EEEEEcccC--CCCCccce
Confidence 2 247999999999999999999999998 999999865 34555599
Q ss_pred EEEEeCCHHHHHHHHHHHhccccccCCCCCeeeecCCCCCCCccc-----------------------------------
Q 011574 233 SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA----------------------------------- 277 (482)
Q Consensus 233 afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------------------------- 277 (482)
|||+|....+|..|++.+++. .+.++++.|.||.++.......
T Consensus 161 aFV~fk~~~dA~~Al~~~N~~--~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d 238 (678)
T KOG0127|consen 161 AFVQFKEKKDAEKALEFFNGN--KIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEED 238 (678)
T ss_pred EEEEEeeHHHHHHHHHhccCc--eecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccc
Confidence 999999999999999999775 7889999999997662111100
Q ss_pred -------c------------------------------------------ccCcceEEEecCCCCCCHHHHHHHHhcccc
Q 011574 278 -------A------------------------------------------ASQVKALYVKNIPDNTSTEKIKELFQRHGE 308 (482)
Q Consensus 278 -------~------------------------------------------~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~ 308 (482)
. .....+|||+|||+++|+++|.++|++||.
T Consensus 239 ~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~ 318 (678)
T KOG0127|consen 239 SEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGE 318 (678)
T ss_pred ccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhcc
Confidence 0 000267999999999999999999999999
Q ss_pred eeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHc-----CC-ceeCCcEEEEEEccCCC
Q 011574 309 VTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT-----EK-YEIDGQVLEVVLAKPQT 361 (482)
Q Consensus 309 v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l-----~~-~~~~g~~l~v~~a~~~~ 361 (482)
|..+.|+.++.+. +|.|||.|.+..+|..||... .+ ..|.||.|.|.+|-.+.
T Consensus 319 v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 319 VKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred ceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchH
Confidence 9999999888765 999999999999999999976 23 67899999999987654
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=7.5e-35 Score=289.93 Aligned_cols=242 Identities=17% Similarity=0.258 Sum_probs=203.8
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCC--eEEEEeec
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG--KTIRCSLS 183 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g--~~l~v~~~ 183 (482)
..+|||.||++.+|+++|+++|+.||.|..|.|+++.. +++|||+|.+.++|.+|++.||+..|.+ +.|+|.++
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 45799999999999999999999999999999987643 4689999999999999999999999864 35555443
Q ss_pred C-------------------------------------------------------------------------------
Q 011574 184 E------------------------------------------------------------------------------- 184 (482)
Q Consensus 184 ~------------------------------------------------------------------------------- 184 (482)
+
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 2
Q ss_pred ----------------------CcceeeeCCCCC-CCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHH
Q 011574 185 ----------------------TKNRLFIGNVPK-NWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNA 241 (482)
Q Consensus 185 ----------------------~~~~l~v~nLp~-~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~ 241 (482)
+.++|||+||+. .+++++|+++|+.||. |..|+++++ .++||||+|.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~-V~~vki~~~------~~g~afV~f~~~~ 324 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGN-VERVKFMKN------KKETALIEMADPY 324 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCC-eEEEEEEeC------CCCEEEEEECCHH
Confidence 124799999998 6999999999999998 999999886 3689999999999
Q ss_pred HHHHHHHHHhccccccCCCCCeeeecCCCCCCCc-------------------------c------ccccCcceEEEecC
Q 011574 242 CADYSRQKMLNANFKLDGNTPTISWADPKSTPDH-------------------------S------AAASQVKALYVKNI 290 (482)
Q Consensus 242 ~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------------------~------~~~~~~~~l~v~nl 290 (482)
+|..|+..|++. .+.++.|.|.++........ . ....+..+|||+||
T Consensus 325 ~A~~Ai~~lng~--~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NL 402 (481)
T TIGR01649 325 QAQLALTHLNGV--KLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNI 402 (481)
T ss_pred HHHHHHHHhCCC--EECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecC
Confidence 999999999876 56789999888744311000 0 00123568999999
Q ss_pred CCCCCHHHHHHHHhcccc--eeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcE------EEEEEccCC
Q 011574 291 PDNTSTEKIKELFQRHGE--VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQV------LEVVLAKPQ 360 (482)
Q Consensus 291 p~~~t~~~l~~~F~~~G~--v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~------l~v~~a~~~ 360 (482)
|..+|+++|+++|+.||. |+.|++...+..++++|||+|.+.++|.+||..||++.|.++. |+|+|++++
T Consensus 403 p~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 403 PLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 999999999999999998 8889887665555799999999999999999999999999985 999999764
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=4.6e-35 Score=297.17 Aligned_cols=244 Identities=23% Similarity=0.385 Sum_probs=200.7
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccC------------CCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPI------------GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~------------G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~ 172 (482)
..++|||+|||+.+|+++|+++|.++ +.|..+.+ .+.+|||||+|.+.++|..|| .|++..
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~g~~ 246 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALDSII 246 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCCCeE
Confidence 56899999999999999999999875 24444544 345789999999999999999 699999
Q ss_pred cCCeEEEEeecC-----------------------------------CcceeeeCCCCCCCCHHHHHHHHhhhCCcccEE
Q 011574 173 LKGKTIRCSLSE-----------------------------------TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217 (482)
Q Consensus 173 ~~g~~l~v~~~~-----------------------------------~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~ 217 (482)
|.|+.|+|.... ..++|||+|||..+++++|+++|+.||. |..+
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~~ 325 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD-LKAF 325 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eeEE
Confidence 999999996421 1258999999999999999999999998 9999
Q ss_pred EEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeeeecCCCCCCCcc---------------------
Q 011574 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS--------------------- 276 (482)
Q Consensus 218 ~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------------- 276 (482)
.+++++ .++.++|||||+|.+..+|..|+..|++. .+.++.|.|.++.........
T Consensus 326 ~~~~~~-~~g~~~g~afv~f~~~~~a~~A~~~l~g~--~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (509)
T TIGR01642 326 NLIKDI-ATGLSKGYAFCEYKDPSVTDVAIAALNGK--DTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSIL 402 (509)
T ss_pred EEEecC-CCCCcCeEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEECccCCCCCCccccccccccccccccchhhhc
Confidence 999884 67889999999999999999999999775 567888888887543211100
Q ss_pred -ccccCcceEEEecCCCCC----------CHHHHHHHHhcccceeEEEcCCCCC----CC-CcEEEEEeCCHHHHHHHHH
Q 011574 277 -AAASQVKALYVKNIPDNT----------STEKIKELFQRHGEVTKVVMPPGKS----GK-RDFGFIHYAERSSALKAVK 340 (482)
Q Consensus 277 -~~~~~~~~l~v~nlp~~~----------t~~~l~~~F~~~G~v~~v~i~~~~~----~~-kg~afV~f~~~e~A~~A~~ 340 (482)
.......+|+|.||.... ..++|+++|++||.|+.|.|++... +. .|+|||+|.+.++|++||.
T Consensus 403 ~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~ 482 (509)
T TIGR01642 403 QIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAME 482 (509)
T ss_pred cccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHH
Confidence 001245789999996421 2367999999999999999987532 22 6899999999999999999
Q ss_pred HcCCceeCCcEEEEEEccC
Q 011574 341 DTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 341 ~l~~~~~~g~~l~v~~a~~ 359 (482)
.|||..|+|+.|.|.|...
T Consensus 483 ~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 483 GMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HcCCCEECCeEEEEEEeCH
Confidence 9999999999999999753
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=9.1e-35 Score=272.66 Aligned_cols=173 Identities=26% Similarity=0.484 Sum_probs=152.5
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 102 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
.....++|||+|||+++|+++|+++|+.||.|++|+|+.+..|++++|||||+|.++++|.+||+.|++..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 33467899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ecCCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCC
Q 011574 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (482)
Q Consensus 182 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (482)
++++...
T Consensus 183 ~a~p~~~------------------------------------------------------------------------- 189 (346)
T TIGR01659 183 YARPGGE------------------------------------------------------------------------- 189 (346)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 6542100
Q ss_pred CeeeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHH
Q 011574 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAV 339 (482)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~ 339 (482)
....++|||+|||..+|+++|+++|++||.|+.|.|+.++. +. ++||||+|.+.++|++||
T Consensus 190 -----------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 252 (346)
T TIGR01659 190 -----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAI 252 (346)
T ss_pred -----------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 00125799999999999999999999999999999998874 34 899999999999999999
Q ss_pred HHcCCceeCC--cEEEEEEccCCCCCC
Q 011574 340 KDTEKYEIDG--QVLEVVLAKPQTDKK 364 (482)
Q Consensus 340 ~~l~~~~~~g--~~l~v~~a~~~~~~~ 364 (482)
+.||+..|.+ ++|+|.++.......
T Consensus 253 ~~lng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 253 SALNNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred HHhCCCccCCCceeEEEEECCcccccc
Confidence 9999998876 789999998765433
No 13
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.2e-35 Score=264.76 Aligned_cols=255 Identities=27% Similarity=0.497 Sum_probs=221.5
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCC-cC--CeEEEEe
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LK--GKTIRCS 181 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~-~~--g~~l~v~ 181 (482)
+.-.|||+.||..|+|.||+.+|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+..||+.. |. ..+|.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 34569999999999999999999999999999999999999999999999999999999999999876 44 4678888
Q ss_pred ecCC-------cceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccc
Q 011574 182 LSET-------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN 254 (482)
Q Consensus 182 ~~~~-------~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 254 (482)
++.. .++|||+-|++.+++.+++++|++||. |++|.|+++ ..+.+|||+||.|.+.+.|..|++.|++..
T Consensus 113 ~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~-Ied~~ilrd--~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 113 YADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGH-IEDCYILRD--PDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ccchhhhccccchhhhhhhccccccHHHHHHHHHhhCc-cchhhheec--ccccccceeEEEEehHHHHHHHHHhhccce
Confidence 8763 478999999999999999999999998 999999998 468899999999999999999999998754
Q ss_pred c-ccCCCCCeeeecCCCCCCCcccc-------------------------------------------------------
Q 011574 255 F-KLDGNTPTISWADPKSTPDHSAA------------------------------------------------------- 278 (482)
Q Consensus 255 ~-~~~~~~~~v~~~~~~~~~~~~~~------------------------------------------------------- 278 (482)
. .-...++.|+|+.+.........
T Consensus 190 tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l 269 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPL 269 (510)
T ss_pred eeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCc
Confidence 3 33456788888876621110000
Q ss_pred --------------------------c--------------c--------------------------------------
Q 011574 279 --------------------------A--------------S-------------------------------------- 280 (482)
Q Consensus 279 --------------------------~--------------~-------------------------------------- 280 (482)
. .
T Consensus 270 ~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~ 349 (510)
T KOG0144|consen 270 NATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAG 349 (510)
T ss_pred chhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccc
Confidence 0 0
Q ss_pred -------------------------------------------------------------------------CcceEEE
Q 011574 281 -------------------------------------------------------------------------QVKALYV 287 (482)
Q Consensus 281 -------------------------------------------------------------------------~~~~l~v 287 (482)
...+|||
T Consensus 350 ~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfi 429 (510)
T KOG0144|consen 350 GMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFI 429 (510)
T ss_pred ccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceee
Confidence 0244999
Q ss_pred ecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCCC
Q 011574 288 KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (482)
Q Consensus 288 ~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 362 (482)
.+||.+.-+.+|...|..||.|.+.++..++.+. |.|+||.|++..+|..||..|||..|+.++|+|.+...+..
T Consensus 430 yhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 430 YHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred eeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 9999999999999999999999999998888766 99999999999999999999999999999999999876654
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.6e-33 Score=275.72 Aligned_cols=161 Identities=22% Similarity=0.443 Sum_probs=145.6
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++++++|+++|.+||.|.+|+|+.++.|++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CC-----------------cceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHH
Q 011574 184 ET-----------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246 (482)
Q Consensus 184 ~~-----------------~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a 246 (482)
.. .++|||+||+..+++++|+++|+.||. |..++|++++ .++.++|||||.|.+.++|.+|
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~-I~svrl~~D~-~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARAP-TGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC-eeEEEEEecC-CCCCcCCeEEEEECCHHHHHHH
Confidence 31 258999999999999999999999998 9999999985 5688999999999999999999
Q ss_pred HHHHhccccccCCCCCeeeecC
Q 011574 247 RQKMLNANFKLDGNTPTISWAD 268 (482)
Q Consensus 247 ~~~~~~~~~~~~~~~~~v~~~~ 268 (482)
+..|++. .+.|+.|.|.++.
T Consensus 263 I~amNg~--elgGr~LrV~kAi 282 (612)
T TIGR01645 263 IASMNLF--DLGGQYLRVGKCV 282 (612)
T ss_pred HHHhCCC--eeCCeEEEEEecC
Confidence 9999754 5556666665543
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1e-30 Score=246.36 Aligned_cols=243 Identities=25% Similarity=0.459 Sum_probs=218.0
Q ss_pred CEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCCc
Q 011574 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~~ 186 (482)
..|||+ +++|+..|.++|+.+|+|++|+++++. | +.|||||.|.++++|.+||.++|...+.|++|+|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 358999 999999999999999999999999998 7 9999999999999999999999999999999999998754
Q ss_pred -ceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeee
Q 011574 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (482)
Q Consensus 187 -~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (482)
..|||.||+..++...|.++|+.||. |.+|+++.+... +++| ||+|.+...|.+|+..+++. .+.++.+.+.
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~-ilS~kv~~~~~g---~kg~-FV~f~~e~~a~~ai~~~ng~--ll~~kki~vg 148 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGN-ILSCKVATDENG---SKGY-FVQFESEESAKKAIEKLNGM--LLNGKKIYVG 148 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcC-eeEEEEEEcCCC---ceee-EEEeCCHHHHHHHHHHhcCc--ccCCCeeEEe
Confidence 45999999999999999999999998 999999998533 9999 99999999999999999876 5678888887
Q ss_pred ecCCCCCCCccc--cccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHc
Q 011574 266 WADPKSTPDHSA--AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342 (482)
Q Consensus 266 ~~~~~~~~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l 342 (482)
..........+. .......++|.|++..+++..|..+|+.+|.|+.+.++.+..+. ++|+||.|.++++|..|+..|
T Consensus 149 ~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l 228 (369)
T KOG0123|consen 149 LFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETL 228 (369)
T ss_pred eccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhc
Confidence 776654433222 23445789999999999999999999999999999999999887 999999999999999999999
Q ss_pred CCceeCCcEEEEEEccCCCC
Q 011574 343 EKYEIDGQVLEVVLAKPQTD 362 (482)
Q Consensus 343 ~~~~~~g~~l~v~~a~~~~~ 362 (482)
|+..+.+..+.|..+..+.+
T Consensus 229 ~~~~~~~~~~~V~~aqkk~e 248 (369)
T KOG0123|consen 229 NGKIFGDKELYVGRAQKKSE 248 (369)
T ss_pred cCCcCCccceeecccccchh
Confidence 99999999999988876443
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.1e-31 Score=247.88 Aligned_cols=251 Identities=29% Similarity=0.504 Sum_probs=218.9
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~ 185 (482)
.+.|||.||+.+++..+|.++|+.||.|++|++..+.. | ++|| ||+|.++++|.+|++.+||..+.+++|.|.....
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 34499999999999999999999999999999999987 5 9999 9999999999999999999999999999976543
Q ss_pred --------------cceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHh
Q 011574 186 --------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKML 251 (482)
Q Consensus 186 --------------~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 251 (482)
-+.++|.+++...++..|..+|..+|. |..+.++.+ ..+.+++|+||.|.+.++|..|+..++
T Consensus 153 ~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~-i~s~~v~~~--~~g~~~~~gfv~f~~~e~a~~av~~l~ 229 (369)
T KOG0123|consen 153 KEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS-ITSVAVMRD--SIGKSKGFGFVNFENPEDAKKAVETLN 229 (369)
T ss_pred hhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCc-ceEEEEeec--CCCCCCCccceeecChhHHHHHHHhcc
Confidence 256899999999999999999999998 999999997 456699999999999999999999998
Q ss_pred ccccccCCCCCeeeecCCCCCCC------------ccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC
Q 011574 252 NANFKLDGNTPTISWADPKSTPD------------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS 319 (482)
Q Consensus 252 ~~~~~~~~~~~~v~~~~~~~~~~------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~ 319 (482)
+..+. +..+.|..+....... .........+|||.||+..++.+.|+.+|+.||.|+.++|+.+..
T Consensus 230 ~~~~~--~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~ 307 (369)
T KOG0123|consen 230 GKIFG--DKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDEN 307 (369)
T ss_pred CCcCC--ccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccC
Confidence 87554 5566666555521111 111134467899999999999999999999999999999999988
Q ss_pred CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCCCCC
Q 011574 320 GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364 (482)
Q Consensus 320 ~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 364 (482)
+. +||+||+|.+.++|.+|+..+|+..+.+++|.|.++..+..+.
T Consensus 308 g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 308 GKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred CCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccch
Confidence 88 9999999999999999999999999999999999998554443
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=5.7e-29 Score=230.76 Aligned_cols=234 Identities=23% Similarity=0.409 Sum_probs=192.3
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~ 185 (482)
..+|+|+||||.+...+|+.+|+.||.|..|.|.+... |+..|||||+|....+|.+||+.+|+..|.||+|-|.|+.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 57899999999999999999999999999999998777 55569999999999999999999999999999999999753
Q ss_pred c-------------------------------------------------------------------------------
Q 011574 186 K------------------------------------------------------------------------------- 186 (482)
Q Consensus 186 ~------------------------------------------------------------------------------- 186 (482)
+
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 2
Q ss_pred -----------------ceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHH
Q 011574 187 -----------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249 (482)
Q Consensus 187 -----------------~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~ 249 (482)
.+|||+|||+.+|+++|.+.|+.||+ |..+.|+.++ .+++++|.|||.|.+..+|..|+..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~-v~ya~iV~~k-~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGE-VKYAIIVKDK-DTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhcc-ceeEEEEecc-CCCCcccceEEEeccHHHHHHHHHh
Confidence 36999999999999999999999998 9999999995 8899999999999999999999988
Q ss_pred Hh----ccccccCCCCCeeeecCCCCCCC---------------------------------------------------
Q 011574 250 ML----NANFKLDGNTPTISWADPKSTPD--------------------------------------------------- 274 (482)
Q Consensus 250 ~~----~~~~~~~~~~~~v~~~~~~~~~~--------------------------------------------------- 274 (482)
.. ...+.+.|+.+.|..+.+.....
T Consensus 354 Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~ 433 (678)
T KOG0127|consen 354 ASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKR 433 (678)
T ss_pred cCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHH
Confidence 72 22367888888888876552111
Q ss_pred ----ccccccCcceEEEecCCCCCCHHHHHHHHhc----c-ccee-EEEcCCC-----CCCCCcEEEEEeCCHHHHHHHH
Q 011574 275 ----HSAAASQVKALYVKNIPDNTSTEKIKELFQR----H-GEVT-KVVMPPG-----KSGKRDFGFIHYAERSSALKAV 339 (482)
Q Consensus 275 ----~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~----~-G~v~-~v~i~~~-----~~~~kg~afV~f~~~e~A~~A~ 339 (482)
.+......++|.|+|||..++...|..+.-+ | +.|. .|+.+.. ++.+.+|+||.|..++.|.+|+
T Consensus 434 k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkal 513 (678)
T KOG0127|consen 434 KKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKAL 513 (678)
T ss_pred HhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhh
Confidence 0111122467899999999999999888754 2 2222 2333322 2223799999999999999999
Q ss_pred HHc
Q 011574 340 KDT 342 (482)
Q Consensus 340 ~~l 342 (482)
..+
T Consensus 514 k~~ 516 (678)
T KOG0127|consen 514 KVL 516 (678)
T ss_pred hcc
Confidence 865
No 18
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1e-27 Score=211.71 Aligned_cols=249 Identities=20% Similarity=0.380 Sum_probs=204.0
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
--|+|||+.|.+.+.++.|+..|..||+|.+|.+.+|+.|++.+|||||+|.-++.|+.|++.||+..+.||.|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred C-----------------cceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHH
Q 011574 185 T-----------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247 (482)
Q Consensus 185 ~-----------------~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~ 247 (482)
. -++|||..+-++.++++|+..|+.||+ |..|.+.+.| ....++||+|++|.+..+...|+
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~-I~~C~LAr~p-t~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARAP-TGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc-eeeEEeeccC-CCCCccceeeEEeccccchHHHh
Confidence 2 268999999999999999999999999 9999999996 66788999999999999988888
Q ss_pred HHHhccccccCCCCCeeeecCCCCCCC-----------------------------------------------------
Q 011574 248 QKMLNANFKLDGNTPTISWADPKSTPD----------------------------------------------------- 274 (482)
Q Consensus 248 ~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------------------------------------------- 274 (482)
..|+- +.+.|..++|..+.......
T Consensus 270 asMNl--FDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~ 347 (544)
T KOG0124|consen 270 ASMNL--FDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQ 347 (544)
T ss_pred hhcch--hhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccC
Confidence 87753 34445444443321110000
Q ss_pred ------------------------ccc-----------------------------------------------------
Q 011574 275 ------------------------HSA----------------------------------------------------- 277 (482)
Q Consensus 275 ------------------------~~~----------------------------------------------------- 277 (482)
.+.
T Consensus 348 p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI 427 (544)
T KOG0124|consen 348 PLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSI 427 (544)
T ss_pred CCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccc
Confidence 000
Q ss_pred --------------cccCcceEEEecC--CCCCCH---HHHHHHHhcccceeEEEcCCCCCCC------CcEEEEEeCCH
Q 011574 278 --------------AASQVKALYVKNI--PDNTST---EKIKELFQRHGEVTKVVMPPGKSGK------RDFGFIHYAER 332 (482)
Q Consensus 278 --------------~~~~~~~l~v~nl--p~~~t~---~~l~~~F~~~G~v~~v~i~~~~~~~------kg~afV~f~~~ 332 (482)
....++.|.++|+ |.++++ .+|++.|.+||.|.+|.|...+.+. ----||+|...
T Consensus 428 ~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~ 507 (544)
T KOG0124|consen 428 SGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIA 507 (544)
T ss_pred cCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechh
Confidence 0000345777887 345544 5789999999999999998877543 12469999999
Q ss_pred HHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 333 SSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 333 e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
.++.+|+..|+|+.|.|+++.....
T Consensus 508 ~e~~rak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 508 SETHRAKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred hHHHHHHHhhccceecCceeehhhh
Confidence 9999999999999999999887654
No 19
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.95 E-value=4.8e-27 Score=225.37 Aligned_cols=249 Identities=22% Similarity=0.364 Sum_probs=206.3
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...+.|+|+|||..+..++|..+|..||.|..|.+... | -.|+|.|.++.+|.+|+..|....+...++.+.|+
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a 456 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---G---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA 456 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc---c---ceeeeeecCccchHHHHHHhchhhhccCccccccC
Confidence 34578999999999999999999999999999955422 2 14999999999999999999988887777766553
Q ss_pred CCc--------------------------------------------------------ceeeeCCCCCCCCHHHHHHHH
Q 011574 184 ETK--------------------------------------------------------NRLFIGNVPKNWTEDEFRKVI 207 (482)
Q Consensus 184 ~~~--------------------------------------------------------~~l~v~nLp~~~t~~~l~~~f 207 (482)
... ++|||.||++..|.+.|..+|
T Consensus 457 P~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F 536 (725)
T KOG0110|consen 457 PEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLF 536 (725)
T ss_pred hhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHH
Confidence 210 249999999999999999999
Q ss_pred hhhCCcccEEEEee--CCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeeeecCCCCCCC---ccccccCc
Q 011574 208 EDVGPGVETIELIK--DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD---HSAAASQV 282 (482)
Q Consensus 208 ~~~G~~i~~~~~~~--d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~ 282 (482)
...|. |..+.|.. ++.....+.||+||+|.+.++|..|++.|++. .+.|+.+.+.++....... ........
T Consensus 537 ~k~G~-VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt--vldGH~l~lk~S~~k~~~~~gK~~~~kk~~ 613 (725)
T KOG0110|consen 537 SKQGT-VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT--VLDGHKLELKISENKPASTVGKKKSKKKKG 613 (725)
T ss_pred HhcCe-EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc--eecCceEEEEeccCcccccccccccccccc
Confidence 99997 77777664 44445678899999999999999999999764 7889999998887221111 11112235
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
++|+|+|||+..+..+|+++|..||.|.+|+|+...... +|||||.|-++.+|.+|+..|..+.|-||.|.+.||...
T Consensus 614 tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 614 TKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred ceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 789999999999999999999999999999999884322 899999999999999999999999999999999999765
Q ss_pred C
Q 011574 361 T 361 (482)
Q Consensus 361 ~ 361 (482)
.
T Consensus 694 ~ 694 (725)
T KOG0110|consen 694 N 694 (725)
T ss_pred h
Confidence 4
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=1.4e-26 Score=228.31 Aligned_cols=172 Identities=23% Similarity=0.479 Sum_probs=149.0
Q ss_pred cceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeee
Q 011574 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (482)
Q Consensus 186 ~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (482)
.++|||+||++.+++++|+++|..||. |..|.+++|+ .+++++|||||+|.+.++|..|+..|++. .+.++.|.|.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~-I~sV~I~~D~-~TgkskGfAFVeF~s~e~A~~Ai~~lnG~--~i~GR~IkV~ 182 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWDP-ATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVG 182 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCC-EEEEEEeecC-CCCCcCCeEEEEeCcHHHHHHHHHhcCCe--EEecceeeec
Confidence 468999999999999999999999998 9999999984 67899999999999999999999999764 6779999888
Q ss_pred ecCCCCCCCc-----cccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHH
Q 011574 266 WADPKSTPDH-----SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKA 338 (482)
Q Consensus 266 ~~~~~~~~~~-----~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A 338 (482)
+......... .......++|||+||+..+++++|+++|+.||.|+.|+|.+++.+. ||||||+|.+.++|.+|
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHH
Confidence 6543221110 1111235799999999999999999999999999999999987643 99999999999999999
Q ss_pred HHHcCCceeCCcEEEEEEccCCC
Q 011574 339 VKDTEKYEIDGQVLEVVLAKPQT 361 (482)
Q Consensus 339 ~~~l~~~~~~g~~l~v~~a~~~~ 361 (482)
|..||+..|+|+.|+|.++.++.
T Consensus 263 I~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 263 IASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHHhCCCeeCCeEEEEEecCCCc
Confidence 99999999999999999998653
No 21
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.94 E-value=3e-27 Score=220.79 Aligned_cols=247 Identities=26% Similarity=0.425 Sum_probs=208.0
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
.+.+|||+-.|+..++..+|.+||+.+|+|..|.++.|..+++++|.|||+|.+.+.+..|| .|.|..+.|.+|.|..+
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEeccc
Confidence 35689999999999999999999999999999999999999999999999999999999999 89999999999999875
Q ss_pred CCc--------------------ceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHH
Q 011574 184 ETK--------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243 (482)
Q Consensus 184 ~~~--------------------~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a 243 (482)
... ..|||+||-+++++..|+.+|++||. |..|.+.+| ..++.++||+|++|.+.++|
T Consensus 256 Eaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~-Ie~v~l~~d-~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 256 EAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGK-IENVQLTKD-SETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred HHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCccc-ceeeeeccc-cccccccCcceEEEecHHHH
Confidence 421 34899999999999999999999998 999999998 36899999999999999999
Q ss_pred HHHHHHHhccccccCCCCCeeeecCCCCCCCc------------------------------------------------
Q 011574 244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDH------------------------------------------------ 275 (482)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------------------------------------------ 275 (482)
.+|+..|++ +.+.|+.|.|...........
T Consensus 334 r~a~e~lng--felAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~ 411 (549)
T KOG0147|consen 334 RKALEQLNG--FELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLL 411 (549)
T ss_pred HHHHHHhcc--ceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHh
Confidence 999999988 888888887755422210000
Q ss_pred ------------------cccc-------cCcceEEEecCCC--CCCH--------HHHHHHHhcccceeEEEcCCCCCC
Q 011574 276 ------------------SAAA-------SQVKALYVKNIPD--NTST--------EKIKELFQRHGEVTKVVMPPGKSG 320 (482)
Q Consensus 276 ------------------~~~~-------~~~~~l~v~nlp~--~~t~--------~~l~~~F~~~G~v~~v~i~~~~~~ 320 (482)
.... ....|+.+.|+=. ..|+ ++|.+.+.+||.|..|.|..+..
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~- 490 (549)
T KOG0147|consen 412 LAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA- 490 (549)
T ss_pred ccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-
Confidence 0000 1234455566522 2221 67888999999999999977653
Q ss_pred CCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 321 ~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
|+.||.|.+.+.|..|+.+|||.+|.|+.|+..|..
T Consensus 491 --g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 491 --GCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred --ceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 899999999999999999999999999999999874
No 22
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.6e-26 Score=195.16 Aligned_cols=157 Identities=30% Similarity=0.597 Sum_probs=146.4
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~ 185 (482)
...|||+.|...++-++|++.|.+||+|.+++|++|..|+++|||+||.|.+.++|++||..|||.-|.+|.|+..|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred ----------------------cceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHH
Q 011574 186 ----------------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243 (482)
Q Consensus 186 ----------------------~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a 243 (482)
++++||+|++..++++.|++.|++||. |..|++.++ +||+||.|.+.++|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~-I~EVRvFk~-------qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP-IQEVRVFKD-------QGYAFVRFETKEAA 213 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc-ceEEEEecc-------cceEEEEecchhhH
Confidence 368999999999999999999999998 999999987 68999999999999
Q ss_pred HHHHHHHhccccccCCCCCeeeecCCCCC
Q 011574 244 DYSRQKMLNANFKLDGNTPTISWADPKST 272 (482)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~v~~~~~~~~ 272 (482)
..|+..+++. .+.+..+++.|.+....
T Consensus 214 ahAIv~mNnt--ei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 214 AHAIVQMNNT--EIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHHHhcCc--eeCceEEEEeccccCCC
Confidence 9999999886 67788899998766543
No 23
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.94 E-value=4.2e-25 Score=199.67 Aligned_cols=144 Identities=26% Similarity=0.461 Sum_probs=128.8
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhc-cCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCE-PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~-~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
..+.|||.|||+++.+.+|++||. +.|+|..|.|+.|.. |+++|+|.|+|+++|.+++|++.||.+.+.||+|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 345699999999999999999995 678999999999976 999999999999999999999999999999999999764
Q ss_pred CCc-----------------------------------------------------------------------------
Q 011574 184 ETK----------------------------------------------------------------------------- 186 (482)
Q Consensus 184 ~~~----------------------------------------------------------------------------- 186 (482)
...
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 321
Q ss_pred --------------ceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhc
Q 011574 187 --------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN 252 (482)
Q Consensus 187 --------------~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 252 (482)
.++||.||...+....|.+.|.-.|. ++.+.+..| ..+.+++|+.++|.++-.|..|+..+..
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk-v~~vdf~id--KeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK-VQSVDFSID--KEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcccee-eeeeceeec--cccccCCeeEEEecchHHHHHHHHhhcc
Confidence 36899999999999999999999998 999988887 3468889999999999999999988764
No 24
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=4.7e-24 Score=193.94 Aligned_cols=188 Identities=26% Similarity=0.435 Sum_probs=155.7
Q ss_pred CCHHHHHHHHHHhCCCCcCCeEEEEeecC----------------CcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEE
Q 011574 156 RSKEFAKKAIDELHSKELKGKTIRCSLSE----------------TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219 (482)
Q Consensus 156 ~~~e~A~~al~~l~~~~~~g~~l~v~~~~----------------~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~ 219 (482)
.+.++|.++|..-. |..|.|.... ..+.|||+.||.++.+++|.-+|++.|+ |..++|
T Consensus 42 ~~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~-I~elRL 115 (506)
T KOG0117|consen 42 QSEEAALKALLERT-----GYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGK-IYELRL 115 (506)
T ss_pred ccHHHHHHHHHHhc-----CceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccc-eeeEEE
Confidence 34677888875433 3345554432 2378999999999999999999999999 999999
Q ss_pred eeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeeeecCCCCCCCccccccCcceEEEecCCCCCCHHHH
Q 011574 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKI 299 (482)
Q Consensus 220 ~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l 299 (482)
|+|+ .++.+||||||.|.+.+.|+.|++.|++..+. .|+.|.|..+ ...++|||+|||..+++++|
T Consensus 116 MmD~-~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc~S------------van~RLFiG~IPK~k~keeI 181 (506)
T KOG0117|consen 116 MMDP-FSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVCVS------------VANCRLFIGNIPKTKKKEEI 181 (506)
T ss_pred eecc-cCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEEEe------------eecceeEeccCCccccHHHH
Confidence 9995 78999999999999999999999999987665 6777777754 33489999999999999999
Q ss_pred HHHHhccc-ceeEEEcCCCCC--CC-CcEEEEEeCCHHHHHHHHHHcC--CceeCCcEEEEEEccCCCCC
Q 011574 300 KELFQRHG-EVTKVVMPPGKS--GK-RDFGFIHYAERSSALKAVKDTE--KYEIDGQVLEVVLAKPQTDK 363 (482)
Q Consensus 300 ~~~F~~~G-~v~~v~i~~~~~--~~-kg~afV~f~~~e~A~~A~~~l~--~~~~~g~~l~v~~a~~~~~~ 363 (482)
.+.|++.+ -|+.|.|..... ++ ||||||+|.++..|..|-++|- ...+.|+.+.|.||.+....
T Consensus 182 lee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ 251 (506)
T KOG0117|consen 182 LEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEP 251 (506)
T ss_pred HHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCC
Confidence 99999987 477777765543 23 9999999999999999998874 34689999999999887654
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.6e-26 Score=207.47 Aligned_cols=172 Identities=26% Similarity=0.466 Sum_probs=150.4
Q ss_pred ceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhcccc-ccCCCCCeee
Q 011574 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANF-KLDGNTPTIS 265 (482)
Q Consensus 187 ~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~-~~~~~~~~v~ 265 (482)
-+|||+.+|..|++.+|+.+|++||. |..|.|++| ..++.++|||||.|.+.++|.+|+.+|++... .-....+.|+
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~-V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGN-VYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCc-eeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 47999999999999999999999998 999999999 57889999999999999999999999987643 2234566777
Q ss_pred ecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCC
Q 011574 266 WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEK 344 (482)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~ 344 (482)
++....... ...++|||+-|+..+|+.+|+++|++||.|++|.|.++..+. ||||||+|.+.+.|..||+.||+
T Consensus 113 ~Ad~E~er~-----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng 187 (510)
T KOG0144|consen 113 YADGERERI-----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNG 187 (510)
T ss_pred ccchhhhcc-----ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhcc
Confidence 766554432 235799999999999999999999999999999999999887 99999999999999999999998
Q ss_pred c-eeCC--cEEEEEEccCCCCCCC
Q 011574 345 Y-EIDG--QVLEVVLAKPQTDKKT 365 (482)
Q Consensus 345 ~-~~~g--~~l~v~~a~~~~~~~~ 365 (482)
. ++.| .+|.|+||.++..+..
T Consensus 188 ~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 188 TQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred ceeeccCCCceEEEecccCCCchH
Confidence 6 5766 6899999998876644
No 26
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.94 E-value=4.1e-24 Score=197.23 Aligned_cols=246 Identities=17% Similarity=0.255 Sum_probs=187.0
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 102 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
.......|.+++|||++|+++|.+||+.++ |.++.+.+. +|+..|-|||+|.+.+++++||+ ++...+..|.|.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 344567799999999999999999999995 677666554 59999999999999999999995 58888999999998
Q ss_pred ecCC-----------------cceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHH
Q 011574 182 LSET-----------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (482)
Q Consensus 182 ~~~~-----------------~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~ 244 (482)
.+.. ...|.++.||+.+|+++|.++|+.+-..-..|.++.+ ..+++.+.|||+|.+.+.|+
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d--~rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD--QRGRPTGEAFVQFESQESAE 159 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc--CCCCcccceEEEecCHHHHH
Confidence 7632 2468889999999999999999988752223556665 45669999999999999999
Q ss_pred HHHHHHhccccccCCCCCeeeec-----------------------------------CCCC------------------
Q 011574 245 YSRQKMLNANFKLDGNTPTISWA-----------------------------------DPKS------------------ 271 (482)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~v~~~-----------------------------------~~~~------------------ 271 (482)
.|+..... .+..+-|.|..+ ....
T Consensus 160 ~Al~rhre---~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~ 236 (510)
T KOG4211|consen 160 IALGRHRE---NIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGF 236 (510)
T ss_pred HHHHHHHH---hhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCcccc
Confidence 99976533 122222211110 0000
Q ss_pred ------CC-------------Cccc---c------------ccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCC
Q 011574 272 ------TP-------------DHSA---A------------ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG 317 (482)
Q Consensus 272 ------~~-------------~~~~---~------------~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~ 317 (482)
.. .... . ......+++++||+..++.+|..+|+..- ...|.|...
T Consensus 237 ~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~-p~~v~i~ig 315 (510)
T KOG4211|consen 237 SRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLN-PYRVHIEIG 315 (510)
T ss_pred ccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCC-ceeEEEEeC
Confidence 00 0000 0 00125689999999999999999999874 447888777
Q ss_pred CCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 318 KSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 318 ~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
..++ .|-|+|+|.++++|..|+. -++..+..+.|.+.+..
T Consensus 316 ~dGr~TGEAdveF~t~edav~Ams-kd~anm~hrYVElFln~ 356 (510)
T KOG4211|consen 316 PDGRATGEADVEFATGEDAVGAMG-KDGANMGHRYVELFLNG 356 (510)
T ss_pred CCCccCCcceeecccchhhHhhhc-cCCcccCcceeeecccC
Confidence 7777 8999999999999999998 47788899999887763
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.93 E-value=4.1e-24 Score=210.79 Aligned_cols=192 Identities=20% Similarity=0.357 Sum_probs=157.4
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCC-eeEEEEec-cCCCCCccceEEEEeCCHHHHHHHHHHhCC--CCcCCeEEEE
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLMK-DKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIRC 180 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~-v~~v~~~~-~~~~g~~~g~afV~f~~~e~A~~al~~l~~--~~~~g~~l~v 180 (482)
..++|||+|||+++|+++|.++|++++. |+.+.++. ...+++++|||||+|.+.++|..|+..|+. ..+.|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4689999999999999999999999863 44444433 334467899999999999999999988764 3578999999
Q ss_pred eecCCc-----------ceeeeCCCCCCCCHHHHHHHHhhh--CCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHH
Q 011574 181 SLSETK-----------NRLFIGNVPKNWTEDEFRKVIEDV--GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247 (482)
Q Consensus 181 ~~~~~~-----------~~l~v~nLp~~~t~~~l~~~f~~~--G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~ 247 (482)
.++.+. ++|||+||+..+++++|+++|+.| |. |..|.+++ +||||+|.+.++|.+|+
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~-I~rV~~~r---------gfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGK-VERVKKIR---------DYAFVHFEDREDAVKAM 286 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCc-eEEEEeec---------CeEEEEeCCHHHHHHHH
Confidence 987642 579999999999999999999999 87 88887764 49999999999999999
Q ss_pred HHHhccccccCCCCCeeeecCCCCCCCc----------------------cccccCcceEEEecCCCCCCHHHHHHHHhc
Q 011574 248 QKMLNANFKLDGNTPTISWADPKSTPDH----------------------SAAASQVKALYVKNIPDNTSTEKIKELFQR 305 (482)
Q Consensus 248 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~ 305 (482)
+.|++. .+.++.|.|.|+.+...... ........++++.||++.++++-|..+|..
T Consensus 287 ~~lnG~--~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~ 364 (578)
T TIGR01648 287 DELNGK--ELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRM 364 (578)
T ss_pred HHhCCC--EECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhcccc
Confidence 999876 67899999999988643310 011123578999999999988888888877
Q ss_pred ccc
Q 011574 306 HGE 308 (482)
Q Consensus 306 ~G~ 308 (482)
+|.
T Consensus 365 ~g~ 367 (578)
T TIGR01648 365 PGP 367 (578)
T ss_pred Ccc
Confidence 654
No 28
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.93 E-value=5.7e-25 Score=212.85 Aligned_cols=168 Identities=23% Similarity=0.462 Sum_probs=149.2
Q ss_pred CcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCee
Q 011574 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (482)
Q Consensus 185 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (482)
++++|||+|||..+++++|+++|+.||+ |..|+|+++. .+++++|||||+|.+.++|.+|+..|++. .+.++.|.|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~-i~~v~i~~d~-~~g~s~g~afV~f~~~~~A~~Ai~~l~g~--~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGE-IESCKLVRDK-VTGQSLGYGFVNYVRPEDAEKAVNSLNGL--RLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCC-EEEEEEEEcC-CCCccceEEEEEECcHHHHHHHHhhcccE--EECCeeEEE
Confidence 4679999999999999999999999998 9999999984 56889999999999999999999999874 678999999
Q ss_pred eecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHc
Q 011574 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDT 342 (482)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l 342 (482)
.|+.+.... ...++|||+|||..+++++|+.+|++||.|..+.|+.+.. +. ++||||+|.+.++|..||+.|
T Consensus 78 ~~a~~~~~~------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l 151 (352)
T TIGR01661 78 SYARPSSDS------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTL 151 (352)
T ss_pred Eeecccccc------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 998776432 2346899999999999999999999999999999887764 33 899999999999999999999
Q ss_pred CCceeCC--cEEEEEEccCCCC
Q 011574 343 EKYEIDG--QVLEVVLAKPQTD 362 (482)
Q Consensus 343 ~~~~~~g--~~l~v~~a~~~~~ 362 (482)
|+..+.| ++|.|.++..+..
T Consensus 152 ~g~~~~g~~~~i~v~~a~~~~~ 173 (352)
T TIGR01661 152 NGTTPSGCTEPITVKFANNPSS 173 (352)
T ss_pred CCCccCCCceeEEEEECCCCCc
Confidence 9999877 6789999876653
No 29
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=5.3e-25 Score=176.50 Aligned_cols=169 Identities=22% Similarity=0.362 Sum_probs=148.6
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
...||||+||+..++++-|.++|-+.|+|+++++.+++.+...+|||||+|.++++|.-|++-||...|.||+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCee
Q 011574 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (482)
Q Consensus 185 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (482)
...+ .+
T Consensus 88 ~~~~------------------------------------------------------------------------nl-- 93 (203)
T KOG0131|consen 88 AHQK------------------------------------------------------------------------NL-- 93 (203)
T ss_pred cccc------------------------------------------------------------------------cc--
Confidence 1100 00
Q ss_pred eecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEE-EcCCCCCC-C-CcEEEEEeCCHHHHHHHHHH
Q 011574 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG-K-RDFGFIHYAERSSALKAVKD 341 (482)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v-~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~ 341 (482)
....+|||+||.+.+.+..|.+.|+.||.+... .|+++..+ + ++||||.|.+.+.+.+|+..
T Consensus 94 ---------------~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 94 ---------------DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred ---------------cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHH
Confidence 112589999999999999999999999988763 67777763 3 89999999999999999999
Q ss_pred cCCceeCCcEEEEEEccCCCC
Q 011574 342 TEKYEIDGQVLEVVLAKPQTD 362 (482)
Q Consensus 342 l~~~~~~g~~l~v~~a~~~~~ 362 (482)
+|+..++.++|+|+++..+..
T Consensus 159 ~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred hccchhcCCceEEEEEEecCC
Confidence 999999999999999986654
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=2.8e-24 Score=215.20 Aligned_cols=172 Identities=19% Similarity=0.389 Sum_probs=146.1
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCe
Q 011574 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (482)
Q Consensus 184 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (482)
...++|||+|||..+++++|+++|+.+|. |..|.++.+ ..++.++|||||+|.+.++|.+|+. +++ ..+.++.|.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~-v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l~g--~~~~g~~i~ 161 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGK-VRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-LTG--QMLLGRPII 161 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-hCC--CEECCeeeE
Confidence 34678999999999999999999999997 999999998 4678999999999999999999985 444 356788888
Q ss_pred eeecCCCCCCCc------cccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHH
Q 011574 264 ISWADPKSTPDH------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSA 335 (482)
Q Consensus 264 v~~~~~~~~~~~------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A 335 (482)
+.+......... .......++|||+|||..+|+++|+++|++||.|..|.|+.+..+ . +|||||+|.+.++|
T Consensus 162 v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 162 VQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred EeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 876543322111 111123589999999999999999999999999999999988765 4 89999999999999
Q ss_pred HHHHHHcCCceeCCcEEEEEEccCC
Q 011574 336 LKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 336 ~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
.+|+..|||..|.|++|.|.|+...
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEccCC
Confidence 9999999999999999999998743
No 31
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=1.3e-24 Score=186.78 Aligned_cols=152 Identities=29% Similarity=0.562 Sum_probs=139.6
Q ss_pred EEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCCcc
Q 011574 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187 (482)
Q Consensus 108 ~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~~~ 187 (482)
.|||+|||..+++.+|+.+|++||+|++|.|+++ |+||...+...|..||..||+..|+|..|.|+.++.++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 5999999999999999999999999999999976 89999999999999999999999999999998776432
Q ss_pred eeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeeeec
Q 011574 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267 (482)
Q Consensus 188 ~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~ 267 (482)
+
T Consensus 76 k------------------------------------------------------------------------------- 76 (346)
T KOG0109|consen 76 K------------------------------------------------------------------------------- 76 (346)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCcee
Q 011574 268 DPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI 347 (482)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~ 347 (482)
..++|+|+||.+.++.++|+..|++||.|..+.|.+ +|+||.|.-.++|..||+.|++..|
T Consensus 77 -------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk------dy~fvh~d~~eda~~air~l~~~~~ 137 (346)
T KOG0109|consen 77 -------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK------DYAFVHFDRAEDAVEAIRGLDNTEF 137 (346)
T ss_pred -------------CccccccCCCCccccCHHHhhhhcccCCceeeeeec------ceeEEEEeeccchHHHHhccccccc
Confidence 126899999999999999999999999999999876 6899999999999999999999999
Q ss_pred CCcEEEEEEccCCCCCCC
Q 011574 348 DGQVLEVVLAKPQTDKKT 365 (482)
Q Consensus 348 ~g~~l~v~~a~~~~~~~~ 365 (482)
.|++|+|.++.++.....
T Consensus 138 ~gk~m~vq~stsrlrtap 155 (346)
T KOG0109|consen 138 QGKRMHVQLSTSRLRTAP 155 (346)
T ss_pred ccceeeeeeeccccccCC
Confidence 999999999988766544
No 32
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.92 E-value=1.6e-23 Score=190.20 Aligned_cols=176 Identities=26% Similarity=0.514 Sum_probs=149.9
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
+.+.|||++|+|+++++.|+++|.+||+|..|.+++++.+++++||+||+|.+++.+..+|. ...+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 56889999999999999999999999999999999999999999999999999999999884 45677778877766554
Q ss_pred CcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCee
Q 011574 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (482)
Q Consensus 185 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (482)
+.
T Consensus 84 ~r------------------------------------------------------------------------------ 85 (311)
T KOG4205|consen 84 SR------------------------------------------------------------------------------ 85 (311)
T ss_pred Cc------------------------------------------------------------------------------
Confidence 22
Q ss_pred eecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHc
Q 011574 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT 342 (482)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l 342 (482)
.............+|||+.||..+++++|+++|.+||.|..+.|+.++... ++|+||.|.+.+.+.+++. .
T Consensus 86 ------~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~ 158 (311)
T KOG4205|consen 86 ------EDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-Q 158 (311)
T ss_pred ------ccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-c
Confidence 111111111234789999999999999999999999999999999888765 9999999999999999887 7
Q ss_pred CCceeCCcEEEEEEccCCCCCCCC
Q 011574 343 EKYEIDGQVLEVVLAKPQTDKKTE 366 (482)
Q Consensus 343 ~~~~~~g~~l~v~~a~~~~~~~~~ 366 (482)
.-+.|+++.|.|..|.++......
T Consensus 159 ~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 159 KFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred ceeeecCceeeEeeccchhhcccc
Confidence 889999999999999999877655
No 33
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.92 E-value=3.3e-24 Score=219.52 Aligned_cols=168 Identities=21% Similarity=0.444 Sum_probs=148.2
Q ss_pred eeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeeeec
Q 011574 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267 (482)
Q Consensus 188 ~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~ 267 (482)
+|||+|||..+|+++|+++|+.||. |..|+|++| ..+++++|||||.|.+.++|.+|+..++.. .+.++.|.+.|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~-v~~v~v~~d-~~t~~s~G~afV~F~~~~~A~~Al~~ln~~--~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGP-VLSVRVCRD-SVTRRSLGYGYVNFQNPADAERALETMNFK--RLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHhCCC--EECCeeEEeecc
Confidence 6999999999999999999999998 999999999 467889999999999999999999998764 467999999997
Q ss_pred CCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCce
Q 011574 268 DPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE 346 (482)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~ 346 (482)
....... .....+|||+|||.++++++|+++|+.||.|..|.|..+..++ +|||||+|.+.++|.+|+..||+..
T Consensus 78 ~~~~~~~----~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 153 (562)
T TIGR01628 78 QRDPSLR----RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGML 153 (562)
T ss_pred ccccccc----ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccE
Confidence 5433221 2234689999999999999999999999999999999888776 9999999999999999999999999
Q ss_pred eCCcEEEEEEccCCCCC
Q 011574 347 IDGQVLEVVLAKPQTDK 363 (482)
Q Consensus 347 ~~g~~l~v~~a~~~~~~ 363 (482)
+.++.|.|.....+..+
T Consensus 154 ~~~~~i~v~~~~~~~~~ 170 (562)
T TIGR01628 154 LNDKEVYVGRFIKKHER 170 (562)
T ss_pred ecCceEEEecccccccc
Confidence 99999999776554443
No 34
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=9.5e-24 Score=178.38 Aligned_cols=170 Identities=25% Similarity=0.479 Sum_probs=152.0
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCe
Q 011574 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (482)
Q Consensus 184 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (482)
..+++|.|.-||..+|+++++.+|...|+ |++|++++| ..++.+-||+||-|.++.+|++|+..+++ +.+..+.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGe-iEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlNG--LrLQ~KTIK 114 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLNG--LRLQNKTIK 114 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccc-eeeeeeeec-cccccccccceeeecChHHHHHHHhhhcc--eeeccceEE
Confidence 34678999999999999999999999999 999999999 58899999999999999999999999976 578899999
Q ss_pred eeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHH
Q 011574 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKD 341 (482)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~ 341 (482)
|+++.|.....+. .+|||.+||..+|..+|.++|++||.|..-+|..+..+. ||.+||.|....+|+.||+.
T Consensus 115 VSyARPSs~~Ik~------aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 115 VSYARPSSDSIKD------ANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred EEeccCChhhhcc------cceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 9999998765443 579999999999999999999999998877777666544 99999999999999999999
Q ss_pred cCCceeCC--cEEEEEEccCCCCC
Q 011574 342 TEKYEIDG--QVLEVVLAKPQTDK 363 (482)
Q Consensus 342 l~~~~~~g--~~l~v~~a~~~~~~ 363 (482)
|||+.-.| -+|.|.||..+...
T Consensus 189 lNG~~P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 189 LNGQKPSGCTEPITVKFANNPSQK 212 (360)
T ss_pred ccCCCCCCCCCCeEEEecCCcccc
Confidence 99998766 58999999876543
No 35
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=1.1e-21 Score=199.25 Aligned_cols=169 Identities=16% Similarity=0.305 Sum_probs=132.4
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHHhhhC-----------CcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHh
Q 011574 183 SETKNRLFIGNVPKNWTEDEFRKVIEDVG-----------PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKML 251 (482)
Q Consensus 183 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G-----------~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~ 251 (482)
....++|||+|||+.+|+++|.++|..++ ..|..+.+ ...++||||+|.+.++|..|+ .|+
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-------~~~kg~afVeF~~~e~A~~Al-~l~ 243 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-------NKEKNFAFLEFRTVEEATFAM-ALD 243 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-------CCCCCEEEEEeCCHHHHhhhh-cCC
Confidence 34567999999999999999999999862 11233322 345789999999999999999 465
Q ss_pred ccccccCCCCCeeeecCCCCCCC-----------------------ccccccCcceEEEecCCCCCCHHHHHHHHhcccc
Q 011574 252 NANFKLDGNTPTISWADPKSTPD-----------------------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308 (482)
Q Consensus 252 ~~~~~~~~~~~~v~~~~~~~~~~-----------------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~ 308 (482)
+ +.+.+..|.|.+........ ........++|||+|||..+|+++|+++|++||.
T Consensus 244 g--~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~ 321 (509)
T TIGR01642 244 S--IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD 321 (509)
T ss_pred C--eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 5 35667777775432211000 0001233578999999999999999999999999
Q ss_pred eeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCC
Q 011574 309 VTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (482)
Q Consensus 309 v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 361 (482)
|..+.|+.+.. +. +|||||+|.+.++|..||..||+..|.|+.|.|.++....
T Consensus 322 i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 322 LKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred eeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 99999988764 33 8999999999999999999999999999999999997543
No 36
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=6.1e-21 Score=162.12 Aligned_cols=255 Identities=21% Similarity=0.364 Sum_probs=162.2
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCC-cCC--eEEEEe
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKG--KTIRCS 181 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~-~~g--~~l~v~ 181 (482)
+.+.|||+-|...-.|+|++.+|..||.|.+|.+.+... |.+||+|||.|.+..+|..||..||+.. +.| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 456799999999999999999999999999999999887 9999999999999999999999999976 333 578888
Q ss_pred ecCCcce---------------------------------------eeeC----CCCCCCCHH----HHHHHHhhhCC--
Q 011574 182 LSETKNR---------------------------------------LFIG----NVPKNWTED----EFRKVIEDVGP-- 212 (482)
Q Consensus 182 ~~~~~~~---------------------------------------l~v~----nLp~~~t~~----~l~~~f~~~G~-- 212 (482)
+++..+. +.-. .|.+-++.. ++...++.-|-
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 8765310 0001 111111110 11111111110
Q ss_pred -ccc--------------EEEEeeCCCCCCCCcce-EEEEeCCHHHHHHHHHHHhccccccC------------------
Q 011574 213 -GVE--------------TIELIKDPQNPSRNRGF-SFVLYYNNACADYSRQKMLNANFKLD------------------ 258 (482)
Q Consensus 213 -~i~--------------~~~~~~d~~~~~~~~g~-afv~f~~~~~a~~a~~~~~~~~~~~~------------------ 258 (482)
.|. .+..+.- ..+. .+| +.+.+.+...|..++-.-.-..+...
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A--~~g~-ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y 253 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPA--PIGV-NGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQY 253 (371)
T ss_pred CCcCccccCCCCCcccccccCCccc--cccc-ccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHH
Confidence 000 0000000 0010 011 11122221222111110000000000
Q ss_pred -----C--CCCeeeecCC-CCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEE
Q 011574 259 -----G--NTPTISWADP-KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIH 328 (482)
Q Consensus 259 -----~--~~~~v~~~~~-~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~ 328 (482)
. ..+...+..+ .............++|||-.||....+.+|.+.|-.||.|++.+|+.|+.++ |.|+||.
T Consensus 254 ~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVS 333 (371)
T KOG0146|consen 254 AAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVS 333 (371)
T ss_pred hhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEe
Confidence 0 0000001111 1111112223457999999999999999999999999999999888888665 9999999
Q ss_pred eCCHHHHHHHHHHcCCceeCCcEEEEEEccCCCCC
Q 011574 329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (482)
Q Consensus 329 f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 363 (482)
|+++.+|+.||..|||..|+=++|+|.+.+|+...
T Consensus 334 fDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred cCCchhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 99999999999999999999999999999988653
No 37
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=6.7e-21 Score=168.77 Aligned_cols=168 Identities=24% Similarity=0.513 Sum_probs=148.4
Q ss_pred ceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeeee
Q 011574 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (482)
Q Consensus 187 ~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (482)
+++||+.+.+.+.++.|+..|.+||+ |.+|.+.+|| .++++++|+||+|.-++.|..|++.|++. .+.|+.|.|.+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGP-IKSInMSWDp-~T~kHKgFAFVEYEvPEaAqLAlEqMNg~--mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWDP-ATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCC-cceeeccccc-ccccccceEEEEEeCcHHHHHHHHHhccc--cccCccccccC
Confidence 67999999999999999999999998 9999999996 78999999999999999999999999886 66789998875
Q ss_pred cCCCCCCCccc-------cccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHH
Q 011574 267 ADPKSTPDHSA-------AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALK 337 (482)
Q Consensus 267 ~~~~~~~~~~~-------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~ 337 (482)
.. +.+.... ....-++|||..+..+++++||+.+|+.||.|..|.+.+...+. |||+||+|.+..+-..
T Consensus 190 Ps--NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 190 PS--NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred CC--CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 43 3322211 12335889999999999999999999999999999999998765 9999999999999999
Q ss_pred HHHHcCCceeCCcEEEEEEccCC
Q 011574 338 AVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 338 A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
||..||-+.++|..|+|-.+..+
T Consensus 268 AiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 268 AIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred HhhhcchhhcccceEecccccCC
Confidence 99999999999999999876543
No 38
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.84 E-value=2e-20 Score=180.27 Aligned_cols=160 Identities=28% Similarity=0.476 Sum_probs=143.7
Q ss_pred CEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCC---CCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES---GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~---g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
++|||.||++++|.++|..+|...|.|.+|.|...++. -.|.|||||+|.++++|++|++.|+++.|.|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 34999999999999999999999999999988776542 246799999999999999999999999999999999988
Q ss_pred CC---------------cceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHH
Q 011574 184 ET---------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248 (482)
Q Consensus 184 ~~---------------~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~ 248 (482)
.. -++|.|.|||+..+..+++.+|..||. +.+|+|+.- ...+.++|||||.|.++..|.+|+.
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGq-lksvRlPKK-~~k~a~rGF~Fv~f~t~~ea~nA~~ 673 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQ-LKSVRLPKK-IGKGAHRGFGFVDFLTPREAKNAFD 673 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccc-eeeeccchh-hcchhhccceeeeccCcHHHHHHHH
Confidence 71 148999999999999999999999998 999999886 5677889999999999999999999
Q ss_pred HHhccccccCCCCCeeeecCCC
Q 011574 249 KMLNANFKLDGNTPTISWADPK 270 (482)
Q Consensus 249 ~~~~~~~~~~~~~~~v~~~~~~ 270 (482)
+|. ...+-|+.+.+.|+...
T Consensus 674 al~--STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 674 ALG--STHLYGRRLVLEWAKSD 693 (725)
T ss_pred hhc--ccceechhhheehhccc
Confidence 997 45788999999998654
No 39
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.83 E-value=1.8e-19 Score=162.32 Aligned_cols=241 Identities=24% Similarity=0.306 Sum_probs=185.2
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCC--CcCCeEEEEee
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK--ELKGKTIRCSL 182 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~--~~~g~~l~v~~ 182 (482)
.+..|.++|||++++|++|..++..||+|..+.+.+-++ .|||+|.+.++|...+...... .|.++.|.|.+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 567899999999999999999999999999999987543 7999999999998744332222 25666666665
Q ss_pred cCCc----------------------------------------------ceeeeCCCCCCCCHHHHHHHHhhhCCcccE
Q 011574 183 SETK----------------------------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216 (482)
Q Consensus 183 ~~~~----------------------------------------------~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~ 216 (482)
+... -.++|.++-..++-+-|..+|++||. |..
T Consensus 101 sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~-VlK 179 (492)
T KOG1190|consen 101 SNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF-VLK 179 (492)
T ss_pred hhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce-eEE
Confidence 4311 14678899999999999999999998 544
Q ss_pred EEEeeCCCCCCCCcce-EEEEeCCHHHHHHHHHHHhccccccCCCCCeeeecCCCC------------------CCC---
Q 011574 217 IELIKDPQNPSRNRGF-SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS------------------TPD--- 274 (482)
Q Consensus 217 ~~~~~d~~~~~~~~g~-afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~------------------~~~--- 274 (482)
|.-.. ++.+| |+|+|.+...|..|...|.++.+.-..+.+++.+..-.. ...
T Consensus 180 IiTF~------Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~ 253 (492)
T KOG1190|consen 180 IITFT------KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQ 253 (492)
T ss_pred EEEEe------cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccc
Confidence 43322 23344 899999999999999999998876655555554432110 000
Q ss_pred ---------------------------------c-ccccc--CcceEEEecCC-CCCCHHHHHHHHhcccceeEEEcCCC
Q 011574 275 ---------------------------------H-SAAAS--QVKALYVKNIP-DNTSTEKIKELFQRHGEVTKVVMPPG 317 (482)
Q Consensus 275 ---------------------------------~-~~~~~--~~~~l~v~nlp-~~~t~~~l~~~F~~~G~v~~v~i~~~ 317 (482)
. ..... ....|.|.||. ..+|.+.|..+|.-||.|.+|.|..+
T Consensus 254 p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n 333 (492)
T KOG1190|consen 254 PSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN 333 (492)
T ss_pred cccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec
Confidence 0 00000 13668888887 67999999999999999999999987
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCC
Q 011574 318 KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (482)
Q Consensus 318 ~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 361 (482)
+. .-|.|+|.+...|+.|+..|+|+.|.|++|+|.+++-..
T Consensus 334 kk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 334 KK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred CC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 73 579999999999999999999999999999999987443
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=6.8e-19 Score=144.54 Aligned_cols=82 Identities=18% Similarity=0.425 Sum_probs=75.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||+.+|+++|+++|++||.|..|.|+.++.+ . ++||||+|.+.++|++||+.||++.|.|++|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34578999999999999999999999999999999888754 3 899999999999999999999999999999999999
Q ss_pred cCCC
Q 011574 358 KPQT 361 (482)
Q Consensus 358 ~~~~ 361 (482)
..+.
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 7654
No 41
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.80 E-value=4e-18 Score=143.23 Aligned_cols=207 Identities=17% Similarity=0.353 Sum_probs=147.7
Q ss_pred CCEEEECCCCCCCCHHHHHH----hhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 106 GSEVFIGGLPKDASEEDLRD----LCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~----~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
..||||.||+..+..++|+. +|++||.|..|..++. .+.+|.|||.|.+.+.|..|+..|+|..+.|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999999998 9999999999998764 6789999999999999999999999999999999999
Q ss_pred ecCCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCC
Q 011574 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (482)
Q Consensus 182 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (482)
+++.++.++..--+..+..+ ..+...++.+.+.. ...++......
T Consensus 86 yA~s~sdii~~~~~~~v~~~----------~k~~~~~~~~~~~~----------------------~~~ng~~~~~~--- 130 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKE----------KKINGEILARIKQP----------------------LDTNGHFYNMN--- 130 (221)
T ss_pred cccCccchhhccCceecccc----------CccccccccccCCc----------------------ccccccccccc---
Confidence 99988765432111000000 00000000000000 00000000000
Q ss_pred CeeeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 011574 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (482)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~ 341 (482)
......+. . .....+...||+.|||..++.+.|..+|.+|.-...|+++... ++.|||+|.+...|..|...
T Consensus 131 -~~~~p~p~---~-~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~---~~iAfve~~~d~~a~~a~~~ 202 (221)
T KOG4206|consen 131 -RMNLPPPF---L-AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR---SGIAFVEFLSDRQASAAQQA 202 (221)
T ss_pred -cccCCCCc---c-ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC---CceeEEecchhhhhHHHhhh
Confidence 00000011 0 1223456789999999999999999999999999999887755 47999999999999999999
Q ss_pred cCCceeC-CcEEEEEEcc
Q 011574 342 TEKYEID-GQVLEVVLAK 358 (482)
Q Consensus 342 l~~~~~~-g~~l~v~~a~ 358 (482)
|.+..|. ...+.|.++.
T Consensus 203 lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 203 LQGFKITKKNTMQITFAK 220 (221)
T ss_pred hccceeccCceEEecccC
Confidence 9998886 7888888764
No 42
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=1.4e-18 Score=165.52 Aligned_cols=243 Identities=20% Similarity=0.404 Sum_probs=189.3
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccC-----------C-CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPI-----------G-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~-----------G-~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~ 172 (482)
..+.++|.++|+.++++.+..+|..- | .|..+.+... +.+|||+|.+.+.|..|+ .+++..
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~------~nfa~ie~~s~~~at~~~-~~~~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE------KNFAFIEFRSISEATEAM-ALDGII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc------ccceeEEecCCCchhhhh-cccchh
Confidence 46789999999999999999998654 2 4677777554 459999999999999999 678888
Q ss_pred cCCeEEEEeecCC-----------------------------cceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCC
Q 011574 173 LKGKTIRCSLSET-----------------------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223 (482)
Q Consensus 173 ~~g~~l~v~~~~~-----------------------------~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~ 223 (482)
+.|..+++..... ..++||++||...++.++++++..||. +....++.+.
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~-lk~f~lv~d~ 325 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP-LKAFRLVKDS 325 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc-chhheeeccc
Confidence 8888887754321 257999999999999999999999998 9999999995
Q ss_pred CCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeeeecCCCCCCCcccc------------------ccCcceE
Q 011574 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA------------------ASQVKAL 285 (482)
Q Consensus 224 ~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~l 285 (482)
.++.+++|||++|.+......|+..|++. .+.++.+.+..+........... ......|
T Consensus 326 -~~g~skg~af~ey~dpsvtd~A~agLnGm--~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl 402 (500)
T KOG0120|consen 326 -ATGNSKGFAFCEYCDPSVTDQAIAGLNGM--QLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVL 402 (500)
T ss_pred -ccccccceeeeeeeCCcchhhhhcccchh--hhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhh
Confidence 55899999999999999999999998875 44566666666544332221111 1112334
Q ss_pred EEecCC--CCC-CH-------HHHHHHHhcccceeEEEcCCC-CCC---C-CcEEEEEeCCHHHHHHHHHHcCCceeCCc
Q 011574 286 YVKNIP--DNT-ST-------EKIKELFQRHGEVTKVVMPPG-KSG---K-RDFGFIHYAERSSALKAVKDTEKYEIDGQ 350 (482)
Q Consensus 286 ~v~nlp--~~~-t~-------~~l~~~F~~~G~v~~v~i~~~-~~~---~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~ 350 (482)
.+.|+- ..+ .+ ++|+..|++||.|..|.|++. ... . .|..||+|++.+++++|+..|+|..|.+|
T Consensus 403 ~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 403 CLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred hhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc
Confidence 444431 111 11 467778899999999999988 322 1 57789999999999999999999999999
Q ss_pred EEEEEEcc
Q 011574 351 VLEVVLAK 358 (482)
Q Consensus 351 ~l~v~~a~ 358 (482)
.|..+|..
T Consensus 483 tVvtsYyd 490 (500)
T KOG0120|consen 483 TVVASYYD 490 (500)
T ss_pred EEEEEecC
Confidence 99998864
No 43
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.78 E-value=1.5e-17 Score=147.14 Aligned_cols=204 Identities=21% Similarity=0.353 Sum_probs=145.1
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHhhccCCCee--------EEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCc
Q 011574 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF--------EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (482)
Q Consensus 102 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~--------~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~ 173 (482)
.+..++.|||.|||.++|.+++.++|++||-|. .|+|.++.. |+.+|-|++.|...+++..|++.|++..|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 355678899999999999999999999999774 488999887 99999999999999999999999999999
Q ss_pred CCeEEEEeecCCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhcc
Q 011574 174 KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (482)
Q Consensus 174 ~g~~l~v~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 253 (482)
.|+.|+|..++- +.-|. . ..+.+.++- ..-.+-+..+...
T Consensus 209 rg~~~rVerAkf----------------------q~Kge-~---------~~~~k~k~k--------~~~~kk~~k~q~k 248 (382)
T KOG1548|consen 209 RGKKLRVERAKF----------------------QMKGE-Y---------DASKKEKGK--------CKDKKKLKKQQQK 248 (382)
T ss_pred cCcEEEEehhhh----------------------hhccC-c---------Ccccccccc--------cccHHHHHHHHHh
Confidence 999999998752 11111 0 000000000 0000111111111
Q ss_pred ccccCCCCCeeeecCCCCCCCccccccCcceEEEecCC----CCCC-------HHHHHHHHhcccceeEEEcCCCCCCCC
Q 011574 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIP----DNTS-------TEKIKELFQRHGEVTKVVMPPGKSGKR 322 (482)
Q Consensus 254 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp----~~~t-------~~~l~~~F~~~G~v~~v~i~~~~~~~k 322 (482)
.+ + |.... .........++|.|+||= ...+ .++|++-+++||.|.+|.|..... .
T Consensus 249 ~~---d------w~pd~---~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hP--d 314 (382)
T KOG1548|consen 249 LL---D------WRPDR---DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHP--D 314 (382)
T ss_pred hc---c------cCCCc---cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCC--C
Confidence 11 1 11111 011112445789999973 2223 256778899999999999875443 3
Q ss_pred cEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 323 g~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
|.+.|.|.+.++|..||+.|+|+.|.||.|..++...+
T Consensus 315 GvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 315 GVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred ceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 89999999999999999999999999999999886544
No 44
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.77 E-value=6.5e-17 Score=149.95 Aligned_cols=167 Identities=17% Similarity=0.252 Sum_probs=132.9
Q ss_pred eeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeeeec
Q 011574 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267 (482)
Q Consensus 188 ~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~ 267 (482)
.|.+..||+.+|+++|.++|+.++ |+.+.+.+ .+++.+|-|||+|.+.+++.+|+++-.. .+..+-|.|-.+
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~--I~~~~~~r---~~Gr~sGeA~Ve~~seedv~~AlkkdR~---~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCG--IENLEIPR---RNGRPSGEAYVEFTSEEDVEKALKKDRE---SMGHRYIEVFTA 83 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCc--eeEEEEec---cCCCcCcceEEEeechHHHHHHHHhhHH---HhCCceEEEEcc
Confidence 455689999999999999999998 88877765 4689999999999999999999986543 466677777665
Q ss_pred CCCCCCCc-----cccccCcceEEEecCCCCCCHHHHHHHHhcccceeE-EEcCCCCCCC-CcEEEEEeCCHHHHHHHHH
Q 011574 268 DPKSTPDH-----SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGK-RDFGFIHYAERSSALKAVK 340 (482)
Q Consensus 268 ~~~~~~~~-----~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~-v~i~~~~~~~-kg~afV~f~~~e~A~~A~~ 340 (482)
.+...... .........|.+++||+.||+++|.+||+..-.|.. |.++.+..++ .|.|||+|++.+.|++||.
T Consensus 84 ~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH
Confidence 44322111 111134578999999999999999999998866665 6677777777 8999999999999999998
Q ss_pred HcCCceeCCcEEEEEEccCCCCC
Q 011574 341 DTEKYEIDGQVLEVVLAKPQTDK 363 (482)
Q Consensus 341 ~l~~~~~~g~~l~v~~a~~~~~~ 363 (482)
. |...|+.|.|.|..+.-...+
T Consensus 164 r-hre~iGhRYIEvF~Ss~~e~~ 185 (510)
T KOG4211|consen 164 R-HRENIGHRYIEVFRSSRAEVK 185 (510)
T ss_pred H-HHHhhccceEEeehhHHHHHH
Confidence 4 778899999999887644433
No 45
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=2.8e-17 Score=132.26 Aligned_cols=141 Identities=23% Similarity=0.425 Sum_probs=125.1
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||.++.+.+|.++|.+||.|..|.|...+ ..-.||||+|.++.+|+.||..-++..+.|..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 356899999999999999999999999999999985442 34569999999999999999999999999999999987
Q ss_pred CCc--------------------------------ceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcc
Q 011574 184 ETK--------------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRG 231 (482)
Q Consensus 184 ~~~--------------------------------~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g 231 (482)
... ..+.|..||+..++++|++.+...|. |....+.+| +
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGd-vCfadv~rD--------g 151 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGD-VCFADVQRD--------G 151 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCC-eeeeeeecc--------c
Confidence 532 36899999999999999999999998 888888887 4
Q ss_pred eEEEEeCCHHHHHHHHHHHhccccc
Q 011574 232 FSFVLYYNNACADYSRQKMLNANFK 256 (482)
Q Consensus 232 ~afv~f~~~~~a~~a~~~~~~~~~~ 256 (482)
.+.|.|...++...|++.|....+.
T Consensus 152 ~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 152 VGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ceeeeeeehhhHHHHHHhhcccccc
Confidence 8999999999999999998776543
No 46
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.74 E-value=1.9e-16 Score=141.71 Aligned_cols=251 Identities=16% Similarity=0.212 Sum_probs=185.3
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
.+...|..++|||..++.+|..+|+-.-.+.-...+.....|+..|.+.|.|.+++.-..|++. |.+.+.++.|.|..+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeecc
Confidence 3556788999999999999999998654333333333333478889999999999999999966 888899999999765
Q ss_pred CCc----------------------ceeeeCCCCCCCCHHHHHHHHhhh---CCcccEEEEeeCCCCCCCCcceEEEEeC
Q 011574 184 ETK----------------------NRLFIGNVPKNWTEDEFRKVIEDV---GPGVETIELIKDPQNPSRNRGFSFVLYY 238 (482)
Q Consensus 184 ~~~----------------------~~l~v~nLp~~~t~~~l~~~f~~~---G~~i~~~~~~~d~~~~~~~~g~afv~f~ 238 (482)
... --|.+++||++++..++..+|.+. +.....+.++.. ..++..|-|||.|.
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r--pdgrpTGdAFvlfa 214 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR--PDGRPTGDAFVLFA 214 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC--CCCCcccceEEEec
Confidence 432 235668999999999999999633 323566666664 56889999999999
Q ss_pred CHHHHHHHHHHHhccccccCCCCCeee----------------------ecCCC---CCCCccccccCcceEEEecCCCC
Q 011574 239 NNACADYSRQKMLNANFKLDGNTPTIS----------------------WADPK---STPDHSAAASQVKALYVKNIPDN 293 (482)
Q Consensus 239 ~~~~a~~a~~~~~~~~~~~~~~~~~v~----------------------~~~~~---~~~~~~~~~~~~~~l~v~nlp~~ 293 (482)
.+..|..|+.+-... +.-+.|.+. ...+- .............+|.+++||+.
T Consensus 215 ~ee~aq~aL~khrq~---iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~ 291 (508)
T KOG1365|consen 215 CEEDAQFALRKHRQN---IGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYE 291 (508)
T ss_pred CHHHHHHHHHHHHHH---HhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChh
Confidence 999999998754321 111111000 00000 00000111123578999999999
Q ss_pred CCHHHHHHHHhccc-ceeE--EEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 294 TSTEKIKELFQRHG-EVTK--VVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 294 ~t~~~l~~~F~~~G-~v~~--v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
.+.++|.+||..|- .|.. |.+..+..++ .|-|||+|.+.+.|..|..+.+++....|.|.|.-+...
T Consensus 292 AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 292 ATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred hhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 99999999999986 3433 7787788777 999999999999999999999998889999999877533
No 47
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=1.9e-17 Score=135.96 Aligned_cols=82 Identities=37% Similarity=0.695 Sum_probs=78.5
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
.+++|||+|||+++|+++|+++|++||.|.+|.|+.++.|++++|||||+|.+.++|++||+.||+..|.|+.|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred Cc
Q 011574 185 TK 186 (482)
Q Consensus 185 ~~ 186 (482)
.+
T Consensus 113 ~~ 114 (144)
T PLN03134 113 DR 114 (144)
T ss_pred cC
Confidence 54
No 48
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.72 E-value=7.3e-16 Score=139.26 Aligned_cols=240 Identities=18% Similarity=0.221 Sum_probs=186.1
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcC-C-eEEEEee
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-G-KTIRCSL 182 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~-g-~~l~v~~ 182 (482)
.--+++|.|+-+-+|-+-|..+|++||.|..|..+.... .=.|+|+|.+.+.|..|...|+|..|- | ..|+|.+
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn----~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~ 224 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN----GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDF 224 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc----chhhhhhccchhhHHHHHHhccCCcccCceeEEEeeh
Confidence 334688999999999999999999999998887765432 224999999999999999999998874 3 4566655
Q ss_pred cCC---------------------------------------------------------------------cceeeeCC
Q 011574 183 SET---------------------------------------------------------------------KNRLFIGN 193 (482)
Q Consensus 183 ~~~---------------------------------------------------------------------~~~l~v~n 193 (482)
++- +..|.|.|
T Consensus 225 Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsn 304 (492)
T KOG1190|consen 225 SKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSN 304 (492)
T ss_pred hhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEec
Confidence 320 02356666
Q ss_pred CC-CCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeeeecCCCCC
Q 011574 194 VP-KNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272 (482)
Q Consensus 194 Lp-~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~ 272 (482)
|. ..+|.+.|..+|.-||. |..|+|+... +..|+|++.+...|..|+..|.+. .+.++.|++.+.+-...
T Consensus 305 ln~~~VT~d~LftlFgvYGd-VqRVkil~nk------kd~ALIQmsd~~qAqLA~~hL~g~--~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 305 LNEEAVTPDVLFTLFGVYGD-VQRVKILYNK------KDNALIQMSDGQQAQLAMEHLEGH--KLYGKKLRVTLSKHTNV 375 (492)
T ss_pred CchhccchhHHHHHHhhhcc-eEEEEeeecC------CcceeeeecchhHHHHHHHHhhcc--eecCceEEEeeccCccc
Confidence 64 45899999999999998 9999998862 357999999999999999999876 55678887776543211
Q ss_pred CCc-----------------------------cccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCc
Q 011574 273 PDH-----------------------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRD 323 (482)
Q Consensus 273 ~~~-----------------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg 323 (482)
... .....++.+|++.|+|.++++++|+.+|..-|-.........+. +.
T Consensus 376 qlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd--~k 453 (492)
T KOG1190|consen 376 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD--RK 453 (492)
T ss_pred cCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCC--cc
Confidence 100 00112356899999999999999999999988765543333221 37
Q ss_pred EEEEEeCCHHHHHHHHHHcCCceeCC-cEEEEEEccC
Q 011574 324 FGFIHYAERSSALKAVKDTEKYEIDG-QVLEVVLAKP 359 (482)
Q Consensus 324 ~afV~f~~~e~A~~A~~~l~~~~~~g-~~l~v~~a~~ 359 (482)
+|.+.+.+.++|..|+..++.+.+.. ..|+|+|++.
T Consensus 454 mal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 454 MALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred eeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999999999976 5899999864
No 49
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.71 E-value=2.9e-17 Score=154.41 Aligned_cols=174 Identities=19% Similarity=0.447 Sum_probs=141.8
Q ss_pred cceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeee
Q 011574 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (482)
Q Consensus 186 ~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (482)
.+++|+-.|+...+..+|.++|+.+|. |..|.++.| +.+.+++|.+||+|.+......|+ .|.++ .+.+.++.|+
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gk-VrdVriI~D-r~s~rskgi~Yvef~D~~sVp~ai-aLsGq--rllg~pv~vq 253 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGK-VRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAI-ALSGQ--RLLGVPVIVQ 253 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcC-cceeEeecc-ccchhhcceeEEEEecccchhhHh-hhcCC--cccCceeEec
Confidence 467888889999999999999999998 999999999 688999999999999999888887 45544 4456666665
Q ss_pred ecCCCCCCCc--------cccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCC-CCC-CcEEEEEeCCHHHH
Q 011574 266 WADPKSTPDH--------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAERSSA 335 (482)
Q Consensus 266 ~~~~~~~~~~--------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~~-kg~afV~f~~~e~A 335 (482)
.......... .....+...|||+||.+.+++++|+.+|++||.|..|.++.+. .+. +||+||+|.+.++|
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 4422211100 0001122349999999999999999999999999999999997 444 99999999999999
Q ss_pred HHHHHHcCCceeCCcEEEEEEccCCCCCC
Q 011574 336 LKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364 (482)
Q Consensus 336 ~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 364 (482)
.+|+..|||..|.|+.|+|.....+....
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTERVDTK 362 (549)
T ss_pred HHHHHHhccceecCceEEEEEeeeecccc
Confidence 99999999999999999999987766544
No 50
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.68 E-value=2.4e-16 Score=130.86 Aligned_cols=221 Identities=17% Similarity=0.212 Sum_probs=129.4
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEec-cCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcC---CeEEE
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMK-DKESGESKGFAFVSFRSKEFAKKAIDELHSKELK---GKTIR 179 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~-~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~---g~~l~ 179 (482)
..-+||||.+||.++...+|..+|..|---..+.|.. ++.....+.+|||.|.+...|..|+..|||..|. +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 3468999999999999999999999986444444433 2222345679999999999999999999999984 78999
Q ss_pred EeecCCcceeeeCCCCCC---CC----HHHHHHHH-hhhCCcccEEEEeeCCCCCCCCcceEE----EEeCCHHHHHHHH
Q 011574 180 CSLSETKNRLFIGNVPKN---WT----EDEFRKVI-EDVGPGVETIELIKDPQNPSRNRGFSF----VLYYNNACADYSR 247 (482)
Q Consensus 180 v~~~~~~~~l~v~nLp~~---~t----~~~l~~~f-~~~G~~i~~~~~~~d~~~~~~~~g~af----v~f~~~~~a~~a~ 247 (482)
|+.++.+++.--...... .+ ..--...+ +.. ...+....+|..... .+.+- -.+...+.-
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~---~qhd~~l~~p~~l~~-~~~a~al~~~~~t~~~~l---- 183 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSAD---DQHDEGLSDPDELQE-PGNADALKENDTTKSEAL---- 183 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccch---hhccccccCccccCC-ccccccCCCccccchhhh----
Confidence 999887654322211110 00 00000000 000 000000001000000 00000 000000000
Q ss_pred HHHhccccccCCCCCeeeecCCC-----CCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCC
Q 011574 248 QKMLNANFKLDGNTPTISWADPK-----STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR 322 (482)
Q Consensus 248 ~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~k 322 (482)
.....|+.+. ...........+.+|||.||...+|+++|+.+|+.|--...++|.... ..
T Consensus 184 -------------~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~--g~ 248 (284)
T KOG1457|consen 184 -------------SAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG--GM 248 (284)
T ss_pred -------------hhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC--Cc
Confidence 0001111111 000111122345789999999999999999999999766666554332 13
Q ss_pred cEEEEEeCCHHHHHHHHHHcCCcee
Q 011574 323 DFGFIHYAERSSALKAVKDTEKYEI 347 (482)
Q Consensus 323 g~afV~f~~~e~A~~A~~~l~~~~~ 347 (482)
..|||.|.+.+.|..|+..|.|..|
T Consensus 249 ~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 249 PVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred ceEeecHHHHHHHHHHHHHhhccee
Confidence 7899999999999999998887665
No 51
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.65 E-value=2.1e-14 Score=128.28 Aligned_cols=245 Identities=20% Similarity=0.216 Sum_probs=193.4
Q ss_pred CCCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhC--CCCcCCeEE
Q 011574 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTI 178 (482)
Q Consensus 101 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~--~~~~~g~~l 178 (482)
..+..+-.|.|++|-..+++.+|.+.++.||.|..|.++..+ ..|.|+|.+.+.|++|+..-. ...+.|+..
T Consensus 26 hk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~A 99 (494)
T KOG1456|consen 26 HKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQA 99 (494)
T ss_pred CCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchh
Confidence 345567789999999999999999999999999999887654 379999999999999984322 223455555
Q ss_pred EEeecC-------------Ccceee--eCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHH
Q 011574 179 RCSLSE-------------TKNRLF--IGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243 (482)
Q Consensus 179 ~v~~~~-------------~~~~l~--v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a 243 (482)
.+.++. +++.|. |-|--..+|-+-|..+..+.|. |..|.|++. +---|.|+|.+.+.|
T Consensus 100 l~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk-VlRIvIfkk------ngVQAmVEFdsv~~A 172 (494)
T KOG1456|consen 100 LFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGK-VLRIVIFKK------NGVQAMVEFDSVEVA 172 (494)
T ss_pred hcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCc-eEEEEEEec------cceeeEEeechhHHH
Confidence 554442 223333 3455567999999999999998 888888763 234699999999999
Q ss_pred HHHHHHHhccccccCCCCCeeeecCCCCCCC-------------------------------------------------
Q 011574 244 DYSRQKMLNANFKLDGNTPTISWADPKSTPD------------------------------------------------- 274 (482)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------------------------------------------- 274 (482)
.+|...|++..+.....++++.+++|.....
T Consensus 173 qrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y 252 (494)
T KOG1456|consen 173 QRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGY 252 (494)
T ss_pred HHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCC
Confidence 9999999999988888888888887651000
Q ss_pred ---------------------------ccccccCcceEEEecCCC-CCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEE
Q 011574 275 ---------------------------HSAAASQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGF 326 (482)
Q Consensus 275 ---------------------------~~~~~~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~af 326 (482)
.+.-..+...+.|.+|.. .++-+.|..+|-.||.|.+|++++.+. +.|.
T Consensus 253 ~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~---gtam 329 (494)
T KOG1456|consen 253 YSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP---GTAM 329 (494)
T ss_pred cccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc---ceeE
Confidence 000011245689999985 567788999999999999999988774 6899
Q ss_pred EEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCC
Q 011574 327 IHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (482)
Q Consensus 327 V~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 361 (482)
|++.+..+.++|+..||+..+-|.+|.|.+++...
T Consensus 330 Vemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 330 VEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred EEcCcHHHHHHHHHHhccCccccceEEEeeccccc
Confidence 99999999999999999999999999999986554
No 52
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=1.3e-15 Score=133.88 Aligned_cols=89 Identities=24% Similarity=0.391 Sum_probs=81.7
Q ss_pred ccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEE
Q 011574 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (482)
Q Consensus 275 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v 354 (482)
........++|+|.|||+..-+-||+.+|.+||.|.+|.|+.+..|+|||+||+|++.++|.+|-.+|||.+|.||+|.|
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 34444667999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 011574 355 VLAKPQTDK 363 (482)
Q Consensus 355 ~~a~~~~~~ 363 (482)
..|..+...
T Consensus 169 n~ATarV~n 177 (376)
T KOG0125|consen 169 NNATARVHN 177 (376)
T ss_pred eccchhhcc
Confidence 999877543
No 53
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=1.6e-14 Score=116.60 Aligned_cols=153 Identities=17% Similarity=0.308 Sum_probs=126.8
Q ss_pred CcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCee
Q 011574 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (482)
Q Consensus 185 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (482)
..+.|||+|||..+.+.+|.++|-+||. |..|.|... .....||||+|.++.+|..|+..-++ +.+.+..|.|
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~-i~~ieLK~r----~g~ppfafVeFEd~RDAeDAiygRdG--Ydydg~rLRV 77 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGR-IREIELKNR----PGPPPFAFVEFEDPRDAEDAIYGRDG--YDYDGCRLRV 77 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcc-eEEEEeccC----CCCCCeeEEEecCccchhhhhhcccc--cccCcceEEE
Confidence 4578999999999999999999999998 999888543 34567999999999999999987654 5678899999
Q ss_pred eecCCCCCCC--------------------ccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcE
Q 011574 265 SWADPKSTPD--------------------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDF 324 (482)
Q Consensus 265 ~~~~~~~~~~--------------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~ 324 (482)
.++..-.... -+.......+|.|.+||.+.+|++|+++..+-|.|....+.++ ++
T Consensus 78 Efprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-----g~ 152 (241)
T KOG0105|consen 78 EFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-----GV 152 (241)
T ss_pred EeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-----cc
Confidence 9886542111 1222344578999999999999999999999999998888776 58
Q ss_pred EEEEeCCHHHHHHHHHHcCCceeCC
Q 011574 325 GFIHYAERSSALKAVKDTEKYEIDG 349 (482)
Q Consensus 325 afV~f~~~e~A~~A~~~l~~~~~~g 349 (482)
+.|+|...++.+=|+.+|....+..
T Consensus 153 GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 153 GVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred eeeeeeehhhHHHHHHhhccccccC
Confidence 9999999999999999998776643
No 54
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3.4e-15 Score=126.15 Aligned_cols=82 Identities=37% Similarity=0.590 Sum_probs=79.5
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
+.++|.|.||+.++++++|++||..||.|..|.|.+++.||.++|||||.|.+.++|.+||..|||.-+..-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cc
Q 011574 185 TK 186 (482)
Q Consensus 185 ~~ 186 (482)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 55
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=3.5e-15 Score=107.88 Aligned_cols=69 Identities=25% Similarity=0.616 Sum_probs=64.9
Q ss_pred EEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEE
Q 011574 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353 (482)
Q Consensus 285 l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~ 353 (482)
|||+|||..+|+++|+++|++||.|..+.+..+..+. +++|||+|.+.++|.+|+..|++..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999998875555 89999999999999999999999999999986
No 56
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=3.5e-15 Score=107.89 Aligned_cols=70 Identities=44% Similarity=0.872 Sum_probs=66.9
Q ss_pred EEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEE
Q 011574 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (482)
Q Consensus 109 v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~ 179 (482)
|||+|||.++|+++|+++|++||.|..+.+..+ .+++++++|||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5689999999999999999999999999999999985
No 57
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=2.8e-14 Score=114.48 Aligned_cols=76 Identities=20% Similarity=0.378 Sum_probs=71.2
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
.++|||+||+..+++.+|..+|..||.|..|.|...+ .|||||+|+++.+|..|+..|+|..|+|..|+|.++...
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP---PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP---PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC---CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 4799999999999999999999999999999998755 489999999999999999999999999999999998654
No 58
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=2.7e-15 Score=127.89 Aligned_cols=166 Identities=27% Similarity=0.446 Sum_probs=129.3
Q ss_pred CEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCCc
Q 011574 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~~ 186 (482)
..|||++||+.+.+.+|..||..||.|..|.+. .||+||+|.+..+|..|+..||+..|.+-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999999885 358999999999999999999999999988888776532
Q ss_pred ceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeeee
Q 011574 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (482)
Q Consensus 187 ~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (482)
..- .+.+.+ + .+.. |
T Consensus 74 ~~~------------------------------------~g~~~~-g-------------------------~r~~---~ 88 (216)
T KOG0106|consen 74 RRG------------------------------------RGRPRG-G-------------------------DRRS---D 88 (216)
T ss_pred ccc------------------------------------cCCCCC-C-------------------------Cccc---h
Confidence 100 000000 0 0000 0
Q ss_pred cCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCce
Q 011574 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (482)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~ 346 (482)
... ......+.+.|.|.|++..+++++|.++|.++|.++...+ .++++||+|.+.++|.+|+..|++..
T Consensus 89 ~~~-----~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------~~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 89 SRR-----YRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------RRNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred hhc-----cCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh------hccccceeehhhhhhhhcchhccchh
Confidence 000 0111134478999999999999999999999999966555 23789999999999999999999999
Q ss_pred eCCcEEEEEE
Q 011574 347 IDGQVLEVVL 356 (482)
Q Consensus 347 ~~g~~l~v~~ 356 (482)
+.++.|.+..
T Consensus 158 ~~~~~l~~~~ 167 (216)
T KOG0106|consen 158 LNGRRISVEK 167 (216)
T ss_pred hcCceeeecc
Confidence 9999999933
No 59
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=3.7e-15 Score=112.70 Aligned_cols=81 Identities=23% Similarity=0.384 Sum_probs=74.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
..+++|||+||++.+++++|.++|+++|.|..|.+-.++..+ -|||||+|.+.++|..|++.+++..++.++|+|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 345899999999999999999999999999999988887765 799999999999999999999999999999999997
Q ss_pred cCC
Q 011574 358 KPQ 360 (482)
Q Consensus 358 ~~~ 360 (482)
..-
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 433
No 60
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=3.4e-15 Score=125.86 Aligned_cols=78 Identities=33% Similarity=0.681 Sum_probs=72.0
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
-+.|||++|+|.++.+.|+++|++||+|+++.|+.|+.|++++||+||+|++.++|.+|++. -+-+|.||+..|.++.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 46799999999999999999999999999999999999999999999999999999999965 5567899998887653
No 61
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=4.5e-15 Score=112.25 Aligned_cols=81 Identities=23% Similarity=0.407 Sum_probs=77.0
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
..++||||+||++.+||++|.+||+++|.|..|.+=.|+.+..+-|||||+|.+.++|..|++.+++..|..+.|+|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 46899999999999999999999999999999999999998999999999999999999999999999999999999875
Q ss_pred C
Q 011574 184 E 184 (482)
Q Consensus 184 ~ 184 (482)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 3
No 62
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.56 E-value=1.9e-12 Score=115.94 Aligned_cols=236 Identities=18% Similarity=0.281 Sum_probs=180.5
Q ss_pred ECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcC--CeEEEEeecCCc--
Q 011574 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK--GKTIRCSLSETK-- 186 (482)
Q Consensus 111 v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~--g~~l~v~~~~~~-- 186 (482)
|-|--+.+|.+-|..++...|+|..|.|++.. | =.|.|+|.+.+.|++|...|||..|- -.+|+|+++++.
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkkn--g---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKKN--G---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEecc--c---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 34555679999999999999999999998752 2 36999999999999999999998863 467888877643
Q ss_pred --------------------------------------------------------------------------------
Q 011574 187 -------------------------------------------------------------------------------- 186 (482)
Q Consensus 187 -------------------------------------------------------------------------------- 186 (482)
T Consensus 202 nV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p 281 (494)
T KOG1456|consen 202 NVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASP 281 (494)
T ss_pred eeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCC
Confidence
Q ss_pred ------ceeeeCCCCC-CCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCC
Q 011574 187 ------NRLFIGNVPK-NWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259 (482)
Q Consensus 187 ------~~l~v~nLp~-~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 259 (482)
..+.|-+|.. .++-+.|-.+|-.||. |..|++|+.. .+.|.|+..+..+.++|+..|++..+ .+
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGN-V~rvkFmkTk------~gtamVemgd~~aver~v~hLnn~~l--fG 352 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGN-VERVKFMKTK------PGTAMVEMGDAYAVERAVTHLNNIPL--FG 352 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCc-eeeEEEeecc------cceeEEEcCcHHHHHHHHHHhccCcc--cc
Confidence 1245555654 3677788999999998 9999999862 46899999999999999999987644 56
Q ss_pred CCCeeeecCCCCCCC-------------------------------ccccccCcceEEEecCCCCCCHHHHHHHHhccc-
Q 011574 260 NTPTISWADPKSTPD-------------------------------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHG- 307 (482)
Q Consensus 260 ~~~~v~~~~~~~~~~-------------------------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G- 307 (482)
.+|.+...+...... +.....+++.|+.-|.|..+|++.|..+|...+
T Consensus 353 ~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v 432 (494)
T KOG1456|consen 353 GKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDV 432 (494)
T ss_pred ceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCC
Confidence 666665543221000 011123467899999999999999999998765
Q ss_pred ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCC------cEEEEEEccCC
Q 011574 308 EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG------QVLEVVLAKPQ 360 (482)
Q Consensus 308 ~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g------~~l~v~~a~~~ 360 (482)
..++|+|+..+.-+..-+.++|++.++|..||..+|...|.+ -.|++-|+.++
T Consensus 433 ~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 433 PPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred CcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 345778887775555678999999999999999999988876 24566665544
No 63
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.3e-14 Score=122.68 Aligned_cols=81 Identities=26% Similarity=0.537 Sum_probs=76.8
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|.|.||+.++++.+|+++|.+||.|.+|.|.+++.+. ||||||.|.+.++|.+||..|||+-++.-.|+|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 356789999999999999999999999999999999999865 999999999999999999999999999999999999
Q ss_pred cCC
Q 011574 358 KPQ 360 (482)
Q Consensus 358 ~~~ 360 (482)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 876
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.55 E-value=2.7e-14 Score=103.02 Aligned_cols=70 Identities=49% Similarity=0.851 Sum_probs=65.1
Q ss_pred EEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEE
Q 011574 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (482)
Q Consensus 109 v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~ 179 (482)
|||+|||+++++++|+++|+.||.|..+.+..++. +.++++|||+|.+.++|.+|+..+++..|.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 89999999999999999999999988999999884
No 65
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.54 E-value=2e-14 Score=135.58 Aligned_cols=81 Identities=16% Similarity=0.355 Sum_probs=74.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||+++|+++|+++|++||.|+.|+|+.+..+ . ++||||+|.+.++|.+||+.||+..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 45689999999999999999999999999999999988653 3 899999999999999999999999999999999998
Q ss_pred cCC
Q 011574 358 KPQ 360 (482)
Q Consensus 358 ~~~ 360 (482)
.+.
T Consensus 185 ~p~ 187 (346)
T TIGR01659 185 RPG 187 (346)
T ss_pred ccc
Confidence 764
No 66
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.1e-15 Score=123.01 Aligned_cols=82 Identities=30% Similarity=0.623 Sum_probs=78.1
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
-.++.-|||+|||+++|+.||.-+|++||.|+.|.|++|+.||+|+||||+.|.+..+...|+..|||..|.||.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 34778899999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cC
Q 011574 183 SE 184 (482)
Q Consensus 183 ~~ 184 (482)
..
T Consensus 112 v~ 113 (219)
T KOG0126|consen 112 VS 113 (219)
T ss_pred cc
Confidence 54
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=3.9e-14 Score=124.16 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=71.1
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.++. .++||||+|.+.++|..||. |||..|.|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 47999999999999999999999999999999988764 36899999999999999996 9999999999999998644
No 68
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.53 E-value=4e-14 Score=102.10 Aligned_cols=69 Identities=33% Similarity=0.654 Sum_probs=63.3
Q ss_pred EEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEE
Q 011574 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353 (482)
Q Consensus 285 l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~ 353 (482)
|||+|||+.+++++|+++|+.||.|..|.+..++.+. +++|||+|.+.++|.+|+..+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999887755 89999999999999999999999999999885
No 69
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.51 E-value=6.2e-14 Score=115.34 Aligned_cols=80 Identities=25% Similarity=0.499 Sum_probs=75.6
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
...|.|-||.+-+|.++|+.+|++||.|.+|.|+.++.+. +|||||.|....+|+.|+.+|+|.+|+|+.|+|++|+.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 4789999999999999999999999999999999999876 99999999999999999999999999999999999975
Q ss_pred CC
Q 011574 360 QT 361 (482)
Q Consensus 360 ~~ 361 (482)
..
T Consensus 93 gr 94 (256)
T KOG4207|consen 93 GR 94 (256)
T ss_pred CC
Confidence 43
No 70
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.51 E-value=3.9e-13 Score=122.75 Aligned_cols=170 Identities=19% Similarity=0.363 Sum_probs=141.0
Q ss_pred cceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeee
Q 011574 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (482)
Q Consensus 186 ~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (482)
.+.+||.|+|++..+++|+++|....-.|+.|.++.| ..++++++|.|+|++++.+++|++.|+. +.+.++.|.|+
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~lnk--~~~~GR~l~vK 119 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLNK--YEVNGRELVVK 119 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhhh--ccccCceEEEe
Confidence 4569999999999999999999987655999999998 6799999999999999999999999975 46677777766
Q ss_pred ecCCCCC---------------------------------------------CCc-------------------------
Q 011574 266 WADPKST---------------------------------------------PDH------------------------- 275 (482)
Q Consensus 266 ~~~~~~~---------------------------------------------~~~------------------------- 275 (482)
-...... ...
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 5433100 000
Q ss_pred ---------cccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCc
Q 011574 276 ---------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKY 345 (482)
Q Consensus 276 ---------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~ 345 (482)
....+...++||.||.+.+....|++.|.-.|.|+.|.+-.++.+. +|||.|+|..+-.|..||..|++.
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccC
Confidence 0001113569999999999999999999999999999999999888 999999999999999999999987
Q ss_pred eeCCcEEEEEEccC
Q 011574 346 EIDGQVLEVVLAKP 359 (482)
Q Consensus 346 ~~~g~~l~v~~a~~ 359 (482)
-+..++..+.+..-
T Consensus 280 g~~~~~~~~Rl~~~ 293 (608)
T KOG4212|consen 280 GLFDRRMTVRLDRI 293 (608)
T ss_pred CCccccceeecccc
Confidence 78888888888543
No 71
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.51 E-value=8.2e-14 Score=122.19 Aligned_cols=76 Identities=20% Similarity=0.336 Sum_probs=70.8
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~ 185 (482)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.+.. ++|||||+|.++++|..|| .|++..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57899999999999999999999999999999998853 5789999999999999999 6999999999999999763
No 72
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=6.5e-14 Score=112.39 Aligned_cols=75 Identities=29% Similarity=0.505 Sum_probs=70.5
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
-.+.|||+||+..+++.+|..+|..||+|.+|+|-..+ .|||||+|.++.+|..|+..|++..|.|..|+|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 36889999999999999999999999999999998754 6899999999999999999999999999999999876
No 73
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.49 E-value=3.6e-13 Score=126.82 Aligned_cols=167 Identities=35% Similarity=0.638 Sum_probs=121.5
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~ 185 (482)
.++|||+|||+++|+++|.++|..||.|..|.+..++.+++++|+|||+|.+.++|..|+..+++..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999998999999999999999999999999999999999999998652
Q ss_pred --cceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCe
Q 011574 186 --KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (482)
Q Consensus 186 --~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (482)
.......++ . . ...... .
T Consensus 195 ~~~~~~~~~~~-----------~-----------------------------------~-----~~~~~~-------~-- 214 (306)
T COG0724 195 ASQPRSELSNN-----------L-----------------------------------D-----ASFAKK-------L-- 214 (306)
T ss_pred ccccccccccc-----------c-----------------------------------c-----hhhhcc-------c--
Confidence 000000000 0 0 000000 0
Q ss_pred eeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHH
Q 011574 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVK 340 (482)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~ 340 (482)
.............+++.+++..++...+..+|..+|.+..+.+....... ..+.++.+.....+..++.
T Consensus 215 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 215 --------SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred --------cccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 00001111334789999999999999999999999999887776665443 3333444444444444443
No 74
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=2e-13 Score=99.29 Aligned_cols=78 Identities=26% Similarity=0.375 Sum_probs=72.1
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
..+.|||+|||+++|.+++.++|.+||.|..|+|=..+. .+|.|||.|.+..+|++|+..|++..+.++.|.|....
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 467899999999999999999999999999999977655 58999999999999999999999999999999998776
Q ss_pred C
Q 011574 185 T 185 (482)
Q Consensus 185 ~ 185 (482)
+
T Consensus 94 ~ 94 (124)
T KOG0114|consen 94 P 94 (124)
T ss_pred H
Confidence 4
No 75
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=1.5e-13 Score=116.06 Aligned_cols=77 Identities=25% Similarity=0.469 Sum_probs=70.4
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
.++|||++|++.++.+.|+++|++||.|+.+.|+.|+... |||+||+|.+.++|.+|++- -+-.|+||+..|.+|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 3789999999999999999999999999999999988744 99999999999999999984 45689999999999875
No 76
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.48 E-value=6.1e-14 Score=115.37 Aligned_cols=81 Identities=30% Similarity=0.500 Sum_probs=77.6
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
..-++|.|-||.+-+|.++|+.+|++||.|-+|.|.+|..|..++|||||.|....+|+.|+.+|++.+|.|+.|+|.++
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred C
Q 011574 184 E 184 (482)
Q Consensus 184 ~ 184 (482)
.
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 5
No 77
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=4e-13 Score=97.74 Aligned_cols=78 Identities=26% Similarity=0.499 Sum_probs=71.8
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
.+.|||+|||+.+|.+++.++|.+||.|..|+|-..+.+ +|.|||.|++..+|.+|+..|+|..+.++.|.|-+..+.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T-rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET-RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc-CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 478999999999999999999999999999999777644 689999999999999999999999999999999887654
No 78
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.5e-13 Score=119.62 Aligned_cols=80 Identities=29% Similarity=0.496 Sum_probs=76.4
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
.=+||||.-|+++++|..|+..|+.||+|..|.|+.++.||+++|||||+|.++.+...|.+..++.+|.|+.|.|..-.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998654
No 79
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=2.9e-13 Score=116.58 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=71.7
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
+.+.+|||+||++.+|+++|++||+.||+|.+|+|+++. ..+++|||+|.++++|..|+ .|+|..|.+++|.|.+.
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 356899999999999999999999999999999999984 45689999999999999999 89999999999999886
Q ss_pred CC
Q 011574 184 ET 185 (482)
Q Consensus 184 ~~ 185 (482)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 53
No 80
>PLN03213 repressor of silencing 3; Provisional
Probab=99.45 E-value=2.6e-13 Score=125.77 Aligned_cols=77 Identities=21% Similarity=0.287 Sum_probs=70.7
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCH--HHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAER--SSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~--e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
..+|||+||++.+++++|+.+|+.||.|.+|.|++.+. ||||||+|.+. .++.+||..|||..|.|+.|+|..|++
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 36899999999999999999999999999999995543 89999999987 789999999999999999999999975
Q ss_pred C
Q 011574 360 Q 360 (482)
Q Consensus 360 ~ 360 (482)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 4
No 81
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.43 E-value=7.4e-13 Score=114.10 Aligned_cols=78 Identities=12% Similarity=0.095 Sum_probs=70.7
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
...+|||+||++.+|+++|++||+.||.|.+|.|+++... ++||||+|.+.++|..|+. |+|..|.+++|.|..+...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et-~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY-ACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc-ceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCccc
Confidence 3479999999999999999999999999999999988532 5899999999999999997 9999999999999887543
No 82
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=2.5e-13 Score=103.76 Aligned_cols=80 Identities=30% Similarity=0.534 Sum_probs=77.1
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
.+-.|||.++...+|+++|.+.|..||+|.+|.|--|..||..+|||+|+|.+.+.|++|+..+|+..|.|..|.|.|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999873
No 83
>PLN03213 repressor of silencing 3; Provisional
Probab=99.42 E-value=4.4e-13 Score=124.26 Aligned_cols=78 Identities=23% Similarity=0.489 Sum_probs=71.7
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCH--HHHHHHHHHhCCCCcCCeEEEEee
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK--EFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~--e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
...+|||+||++++|+++|+.+|..||.|..|.|++ .|| +|||||+|.+. .++.+||+.||+..|.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 347899999999999999999999999999999994 456 99999999987 789999999999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8754
No 84
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=1.1e-12 Score=114.31 Aligned_cols=83 Identities=25% Similarity=0.448 Sum_probs=76.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
.+-+||||..|++.+++..|+..|+.||.|+.|.|+.++.+ + +|||||+|.+..+...|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 44589999999999999999999999999999999999754 4 999999999999999999999999999999999997
Q ss_pred cCCCC
Q 011574 358 KPQTD 362 (482)
Q Consensus 358 ~~~~~ 362 (482)
..+..
T Consensus 179 RgRTv 183 (335)
T KOG0113|consen 179 RGRTV 183 (335)
T ss_pred ccccc
Confidence 65543
No 85
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.9e-13 Score=113.43 Aligned_cols=87 Identities=26% Similarity=0.528 Sum_probs=79.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||++|...+++.-|...|-+||.|+.|.|+.+.... |+||||+|...++|.+||..||...|.||.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 456899999999999999999999999999999999988644 999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 011574 358 KPQTDKKTE 366 (482)
Q Consensus 358 ~~~~~~~~~ 366 (482)
+|...+...
T Consensus 88 kP~kikegs 96 (298)
T KOG0111|consen 88 KPEKIKEGS 96 (298)
T ss_pred CCccccCCC
Confidence 988765443
No 86
>smart00362 RRM_2 RNA recognition motif.
Probab=99.41 E-value=1.4e-12 Score=94.43 Aligned_cols=72 Identities=46% Similarity=0.803 Sum_probs=67.3
Q ss_pred EEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 108 ~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
+|+|+|||..++.++|+++|.+||.|..+.+..+. +.++++|||+|.+.+.|.+|++.+++..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 6788999999999999999999999999999998873
No 87
>smart00362 RRM_2 RNA recognition motif.
Probab=99.40 E-value=1.7e-12 Score=94.07 Aligned_cols=72 Identities=28% Similarity=0.583 Sum_probs=66.0
Q ss_pred eEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEE
Q 011574 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (482)
Q Consensus 284 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~ 355 (482)
+|+|+|||..+++++|+++|.+||.|..+.+..+....+++|||+|.+.++|.+|+..+++..|.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999999999999999888772238999999999999999999999999999999873
No 88
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=6.3e-13 Score=117.27 Aligned_cols=78 Identities=27% Similarity=0.501 Sum_probs=73.0
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~ 185 (482)
..+|+|+|||+...+-||+.+|.+||+|.+|.|+-+.. -||||+||+|.+.++|++|.+.||+..+.||+|.|..+..
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER--GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER--GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC--CCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 46899999999999999999999999999999998764 4899999999999999999999999999999999998764
No 89
>smart00360 RRM RNA recognition motif.
Probab=99.37 E-value=2.6e-12 Score=92.70 Aligned_cols=71 Identities=48% Similarity=0.863 Sum_probs=67.0
Q ss_pred ECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 111 v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
|+|||..+++++|+.+|+.||.|..+.+..++.++.++++|||+|.+.++|.+|+..+++..+.++.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988788999999999999999999999999999999998873
No 90
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.3e-12 Score=99.89 Aligned_cols=82 Identities=16% Similarity=0.289 Sum_probs=76.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
.....|||.++...+|+++|.+.|..||.|+.|.|..++.+. ||||.|+|++.++|++||..||+..|.|.+|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 445789999999999999999999999999999999888755 999999999999999999999999999999999999
Q ss_pred cCCC
Q 011574 358 KPQT 361 (482)
Q Consensus 358 ~~~~ 361 (482)
..+.
T Consensus 150 Fv~g 153 (170)
T KOG0130|consen 150 FVKG 153 (170)
T ss_pred EecC
Confidence 7664
No 91
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=2.3e-13 Score=109.69 Aligned_cols=107 Identities=20% Similarity=0.329 Sum_probs=85.0
Q ss_pred HHHHHHHhccccccCCCCCeeeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--
Q 011574 244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-- 321 (482)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-- 321 (482)
.+-+..|+...+.+.... ..+|..... .+.-|||+|||+.+|+-+|.-+|++||.|+.|.|++++.+.
T Consensus 7 vk~i~~lne~Elq~g~~~-~~SWH~~Yk---------dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKS 76 (219)
T KOG0126|consen 7 VKNIQKLNERELQLGIAD-KKSWHQEYK---------DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKS 76 (219)
T ss_pred HHHHHHhhHHhhcccccc-ccchhhhcc---------cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcc
Confidence 344455555544333222 445543332 23579999999999999999999999999999999999754
Q ss_pred CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 322 kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
+||||+.|++..+...|+..|||..|.||.|+|.-....
T Consensus 77 KGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Y 115 (219)
T KOG0126|consen 77 KGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNY 115 (219)
T ss_pred cceEEEEecCccceEEEEeccCCceecceeEEeeecccc
Confidence 999999999999999999999999999999999876543
No 92
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.35 E-value=4.8e-12 Score=86.45 Aligned_cols=56 Identities=32% Similarity=0.554 Sum_probs=51.6
Q ss_pred HHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 299 IKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 299 l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
|+++|++||.|..|.+...+ +++|||+|.+.++|..|+..||+..|.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998776 489999999999999999999999999999999986
No 93
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.9e-13 Score=135.15 Aligned_cols=232 Identities=17% Similarity=0.209 Sum_probs=189.2
Q ss_pred CCCEEEECCCCCCCCHH-HHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 105 NGSEVFIGGLPKDASEE-DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~-~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
......+.++.+..... ..+..|+.++.|..|++......-..-.+.++.+....+++.|. ...+..+.++.+.|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCCC
Confidence 44556777887776655 56788999999999998763221223338899999999999998 56888888888888776
Q ss_pred CCc----------------ceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHH
Q 011574 184 ETK----------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247 (482)
Q Consensus 184 ~~~----------------~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~ 247 (482)
.+. .++||.||+..+.+.+|...|..++. +..+.+. -....++.+|+||+.|.....+.+|+
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~-~e~vqi~-~h~n~~~~rG~~Y~~F~~~~~~~aaV 726 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGT-IEVVQIV-IHKNEKRFRGKAYVEFLKPEHAGAAV 726 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccch-hhhHHHH-HHhhccccccceeeEeecCCchhhhh
Confidence 643 36899999999999999999999986 6666665 22467888999999999999998888
Q ss_pred HHHhccccccCCCCCeeeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEE
Q 011574 248 QKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGF 326 (482)
Q Consensus 248 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~af 326 (482)
.......+ ....|+|.|+|+..|.+.|+.+|+.+|.+++++++..+.++ +|.||
T Consensus 727 ~f~d~~~~-------------------------gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~ 781 (881)
T KOG0128|consen 727 AFRDSCFF-------------------------GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKAR 781 (881)
T ss_pred hhhhhhhh-------------------------hhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhcccccccee
Confidence 65433211 12579999999999999999999999999999999999988 99999
Q ss_pred EEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCCCCC
Q 011574 327 IHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364 (482)
Q Consensus 327 V~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 364 (482)
|.|.+..+|.+++.......+.-+.+.|..++|...+.
T Consensus 782 v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~K~ 819 (881)
T KOG0128|consen 782 VDYNTEADASRKVASVDVAGKRENNGEVQVSNPERDKK 819 (881)
T ss_pred ccCCCcchhhhhcccchhhhhhhcCccccccCCccccc
Confidence 99999999999999888888888889999887754443
No 94
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.33 E-value=1.1e-11 Score=90.34 Aligned_cols=73 Identities=30% Similarity=0.590 Sum_probs=68.0
Q ss_pred eEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEE
Q 011574 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (482)
Q Consensus 284 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~ 356 (482)
+|+|+|||..+++++|+++|+.||.|..+.+.....+. +++|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999998877655 79999999999999999999999999999999874
No 95
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.31 E-value=1.5e-11 Score=89.50 Aligned_cols=74 Identities=47% Similarity=0.846 Sum_probs=68.7
Q ss_pred EEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 108 ~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+ ..+++|||+|.+.++|..|+..+++..+.+++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988764 7789999999999999999999999999999998863
No 96
>smart00360 RRM RNA recognition motif.
Probab=99.31 E-value=8.3e-12 Score=90.04 Aligned_cols=69 Identities=32% Similarity=0.623 Sum_probs=63.2
Q ss_pred EecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEE
Q 011574 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (482)
Q Consensus 287 v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~ 355 (482)
|+|||..+++++|+++|++||.|..+.|..++. +. +++|||+|.+.++|.+|+..+++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999999988764 33 8999999999999999999999999999999873
No 97
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.30 E-value=3.5e-12 Score=103.19 Aligned_cols=79 Identities=27% Similarity=0.423 Sum_probs=74.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
.+..+|||+||+..++++.|.++|-+.|.|..++|++++... +|||||+|.+.++|.=||+-||...|-||+|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 345799999999999999999999999999999999998755 899999999999999999999988999999999999
Q ss_pred c
Q 011574 358 K 358 (482)
Q Consensus 358 ~ 358 (482)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 98
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=3.4e-12 Score=106.11 Aligned_cols=83 Identities=34% Similarity=0.606 Sum_probs=79.5
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||++|..++|+.-|...|-.||.|..|.+..|..+.+.+||+||+|...++|..||..||...|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
++.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 865
No 99
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.30 E-value=6.4e-12 Score=119.98 Aligned_cols=79 Identities=37% Similarity=0.718 Sum_probs=77.2
Q ss_pred CEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCC
Q 011574 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~ 185 (482)
+.|||+|||+++++++|..+|+..|.|.+++++.|+.||+++||+|++|.+.+.|..|++.||+..+.||+|+|.++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999998764
No 100
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.28 E-value=7.2e-10 Score=108.93 Aligned_cols=78 Identities=23% Similarity=0.497 Sum_probs=73.0
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCC
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 361 (482)
++||||+.|+..+++.+|.++|+.||.|.+|.++..+ +||||++....+|.+|+.+|+++.|.++.|+|.|+..+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R----~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR----GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC----ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 5889999999999999999999999999999998776 999999999999999999999999999999999997665
Q ss_pred CC
Q 011574 362 DK 363 (482)
Q Consensus 362 ~~ 363 (482)
.+
T Consensus 497 ~k 498 (894)
T KOG0132|consen 497 PK 498 (894)
T ss_pred cc
Confidence 44
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.23 E-value=1e-10 Score=113.06 Aligned_cols=163 Identities=13% Similarity=0.081 Sum_probs=111.7
Q ss_pred eeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCee----
Q 011574 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI---- 264 (482)
Q Consensus 189 l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v---- 264 (482)
+.+...++.....+++++|...- +....|..+ .......|-++|.|.....+.+|++.-... .-.+.+.+
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~~--~~~~~l~~~-~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~---~~~R~~q~~P~g 387 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGRN--AQSTDLSEN-RVAPPQTGRKTVMFTPQAPFQNAFTRNPSD---DVNRPFQTGPPG 387 (944)
T ss_pred eeecccccccccchhhhhcCccc--ccccchhhh-hcCCCcCCceEEEecCcchHHHHHhcCchh---hhhcceeecCCC
Confidence 34466777888889999988654 555555554 233344789999999999999997642211 11111111
Q ss_pred --eec---------C------------------CCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeE-EEc
Q 011574 265 --SWA---------D------------------PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVM 314 (482)
Q Consensus 265 --~~~---------~------------------~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~-v~i 314 (482)
.|. . ...-...........+|||..||..++..++.++|...-.|++ |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 110 0 0000001111223578999999999999999999998777776 788
Q ss_pred CCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 315 PPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 315 ~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
.+...+. ++.|||.|..++++..|+..-+.+.++.+.|+|.-.
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 7777766 899999999999999988766777788888988654
No 102
>smart00361 RRM_1 RNA recognition motif.
Probab=99.22 E-value=4.8e-11 Score=85.42 Aligned_cols=61 Identities=23% Similarity=0.463 Sum_probs=55.6
Q ss_pred HHHHHHhhc----cCCCeeEEE-EeccCCC--CCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEE
Q 011574 120 EEDLRDLCE----PIGDVFEVR-LMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (482)
Q Consensus 120 ~~~l~~~f~----~~G~v~~v~-~~~~~~~--g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v 180 (482)
+++|+++|+ +||.|.+|. ++.++.+ +.++|+|||+|.+.++|.+|++.||+..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 568888888 999999995 7777766 899999999999999999999999999999999986
No 103
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.20 E-value=8.4e-11 Score=80.24 Aligned_cols=56 Identities=38% Similarity=0.705 Sum_probs=50.8
Q ss_pred HHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 123 LRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 123 l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
|+++|++||.|..|.+.... +++|||+|.+.++|.+|++.||+..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998764 579999999999999999999999999999999875
No 104
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.20 E-value=1.4e-10 Score=110.10 Aligned_cols=79 Identities=24% Similarity=0.519 Sum_probs=66.8
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCC-CCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
.+|||+|||.+++..+|+++|.+||.|+...|.... .++ ..||||+|.+..++..||. .+-..|++++|.|...++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEecccc
Confidence 459999999999999999999999999977665433 222 4899999999999999999 4688899999999987665
Q ss_pred CC
Q 011574 361 TD 362 (482)
Q Consensus 361 ~~ 362 (482)
..
T Consensus 368 ~~ 369 (419)
T KOG0116|consen 368 FR 369 (419)
T ss_pred cc
Confidence 43
No 105
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=6.6e-11 Score=112.35 Aligned_cols=72 Identities=26% Similarity=0.480 Sum_probs=65.0
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEE
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v 180 (482)
...++|+|-|||..+++++|..+|..||+|..|+.-.. .++.+||+|.+..+|+.|++.|++..+.|+.|..
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 35689999999999999999999999999999766443 4789999999999999999999999999998883
No 106
>smart00361 RRM_1 RNA recognition motif.
Probab=99.19 E-value=6.8e-11 Score=84.63 Aligned_cols=60 Identities=22% Similarity=0.324 Sum_probs=51.0
Q ss_pred HHHHHHHHh----cccceeEEE-cCCCCC---CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEE
Q 011574 296 TEKIKELFQ----RHGEVTKVV-MPPGKS---GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (482)
Q Consensus 296 ~~~l~~~F~----~~G~v~~v~-i~~~~~---~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~ 355 (482)
+++|+++|+ +||.|.+|. |..++. +. +|||||+|.+.++|.+|+..|||+.|.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 577888888 999999985 444432 33 9999999999999999999999999999999873
No 107
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.18 E-value=5.6e-11 Score=113.61 Aligned_cols=80 Identities=24% Similarity=0.457 Sum_probs=75.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
+.|||+|||+.+++++|..+|+..|.|..+++..|+.+. +||||++|.+.++|..|++.||+..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 789999999999999999999999999999999998754 999999999999999999999999999999999999765
Q ss_pred CC
Q 011574 361 TD 362 (482)
Q Consensus 361 ~~ 362 (482)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 108
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.17 E-value=5.6e-11 Score=107.05 Aligned_cols=144 Identities=22% Similarity=0.316 Sum_probs=113.5
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccC----CCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPI----GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~----G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
.-.|.+++||+++|+.++.+||..- |-+..|.++...+ |+..|-|||.|..+++|+.||.+ |...|.-|.|.+.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 3468899999999999999999632 2345666666655 99999999999999999999954 5444444443332
Q ss_pred -------------------------------------ecCCcceeeeCCCCCCCCHHHHHHHHhhhCCcccE--EEEeeC
Q 011574 182 -------------------------------------LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET--IELIKD 222 (482)
Q Consensus 182 -------------------------------------~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~--~~~~~d 222 (482)
..+.+.+|.+++||+..+.++|..+|..|-..|.. +.++.+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 23345789999999999999999999999866655 666664
Q ss_pred CCCCCCCcceEEEEeCCHHHHHHHHHHHhcc
Q 011574 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (482)
Q Consensus 223 ~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 253 (482)
..++..|-|||+|.+.+.|..|..+..++
T Consensus 319 --~qGrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 319 --GQGRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred --CCCCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 67999999999999999999888876654
No 109
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.16 E-value=4.7e-11 Score=103.85 Aligned_cols=74 Identities=22% Similarity=0.570 Sum_probs=69.5
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCCC
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 362 (482)
.+|||+|||..+++.+|+.+|++||+|..|.|++ .||||..++...|..||..||+.+|.|..|+|..++.+.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk 76 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK 76 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec------ccceEEeecccccHHHHhhcccceecceEEEEEeccccCC
Confidence 4799999999999999999999999999999976 5799999999999999999999999999999999988843
No 110
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.16 E-value=2.5e-09 Score=103.71 Aligned_cols=139 Identities=13% Similarity=0.090 Sum_probs=108.8
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
.+.+-|-+++.++++...+++++|... .|..+.|..+...+...|-++|.|.....+.+|++. |...+..|.+.|.++
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPP 386 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCC
Confidence 456778889999999999999999754 355566666655444588999999999999999955 777788888888664
Q ss_pred CCc---------------------------------------------ceeeeCCCCCCCCHHHHHHHHhhhCCcccE-E
Q 011574 184 ETK---------------------------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVET-I 217 (482)
Q Consensus 184 ~~~---------------------------------------------~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~-~ 217 (482)
... ..|||..||..++...+.++|...-. |++ |
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~-Ved~I 465 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAA-VEDFI 465 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhh-hhhee
Confidence 311 47999999999999999999999887 555 5
Q ss_pred EEeeCCCCCCCCcceEEEEeCCHHHHHHHH
Q 011574 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSR 247 (482)
Q Consensus 218 ~~~~d~~~~~~~~g~afv~f~~~~~a~~a~ 247 (482)
.|.+ ..+++.++.|||.|...+++..|+
T Consensus 466 ~lt~--~P~~~~~~~afv~F~~~~a~~~a~ 493 (944)
T KOG4307|consen 466 ELTR--LPTDLLRPAAFVAFIHPTAPLTAS 493 (944)
T ss_pred Eecc--CCcccccchhhheeccccccchhh
Confidence 5555 457788889999999866554443
No 111
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.16 E-value=1.4e-10 Score=109.13 Aligned_cols=78 Identities=33% Similarity=0.652 Sum_probs=73.2
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCC-CCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
.++|||+|||..+|+++|+++|.+||.|..|.|..++ .+. +|||||+|.+.++|..|+..+++..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 4899999999999999999999999999999999986 344 99999999999999999999999999999999999764
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=8.3e-10 Score=104.12 Aligned_cols=169 Identities=20% Similarity=0.351 Sum_probs=112.3
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEec-cCCC--CCccc---eEEEEeCCHHHHHHHHHHhCCCCcCC
Q 011574 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMK-DKES--GESKG---FAFVSFRSKEFAKKAIDELHSKELKG 175 (482)
Q Consensus 102 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~-~~~~--g~~~g---~afV~f~~~e~A~~al~~l~~~~~~g 175 (482)
.+.-++.|||++||++++++.|...|..||.+.- .... .... -..+| |+|+.|.++..+..-|....- .-..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~ 332 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGN 332 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccc
Confidence 3445788999999999999999999999998642 2221 1111 13466 999999999999887766442 1122
Q ss_pred eEEEEeecCCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhcccc
Q 011574 176 KTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANF 255 (482)
Q Consensus 176 ~~l~v~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~ 255 (482)
-.|.|.....+.+ .|. |.-+.+. | --||
T Consensus 333 ~yf~vss~~~k~k-~VQ---------------------IrPW~la-D---------s~fv-------------------- 360 (520)
T KOG0129|consen 333 YYFKVSSPTIKDK-EVQ---------------------IRPWVLA-D---------SDFV-------------------- 360 (520)
T ss_pred eEEEEecCccccc-cee---------------------EEeeEec-c---------chhh--------------------
Confidence 2233332221111 000 1111110 0 0000
Q ss_pred ccCCCCCeeeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHh-cccceeEEEcCCCCCCC--CcEEEEEeCCH
Q 011574 256 KLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ-RHGEVTKVVMPPGKSGK--RDFGFIHYAER 332 (482)
Q Consensus 256 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~--kg~afV~f~~~ 332 (482)
.. ......+.+||||++||..++.++|-.+|. -||.|..+-|..|..-+ +|-|-|+|.+.
T Consensus 361 -~d----------------~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnq 423 (520)
T KOG0129|consen 361 -LD----------------HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQ 423 (520)
T ss_pred -hc----------------cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeeccc
Confidence 00 011113458999999999999999999999 59999999999996544 99999999999
Q ss_pred HHHHHHHHH
Q 011574 333 SSALKAVKD 341 (482)
Q Consensus 333 e~A~~A~~~ 341 (482)
.+-.+||.+
T Consensus 424 qsYi~AIsa 432 (520)
T KOG0129|consen 424 QAYIKAISA 432 (520)
T ss_pred HHHHHHHhh
Confidence 999999984
No 113
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=6.5e-11 Score=101.54 Aligned_cols=86 Identities=27% Similarity=0.505 Sum_probs=80.3
Q ss_pred CCCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEE
Q 011574 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (482)
Q Consensus 101 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v 180 (482)
..-+++|+|||-.||.+..+.+|..+|-.||.|++.+++.|+.|..+|.|+||.|.++.+|+.||..|||..|.=++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999899988
Q ss_pred eecCCc
Q 011574 181 SLSETK 186 (482)
Q Consensus 181 ~~~~~~ 186 (482)
..-+++
T Consensus 360 QLKRPk 365 (371)
T KOG0146|consen 360 QLKRPK 365 (371)
T ss_pred hhcCcc
Confidence 776554
No 114
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.11 E-value=3.2e-10 Score=103.64 Aligned_cols=177 Identities=21% Similarity=0.334 Sum_probs=134.4
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
..+++|++++.+.+.+.++..++..+|.+..+.+........++++++|.|...+.+..||.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 56889999999999999999999999988888888777778999999999999999999995533234444433222111
Q ss_pred CcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCee
Q 011574 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (482)
Q Consensus 185 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (482)
.. ..+. ..
T Consensus 167 ~~--------------------------------~~~~-----------------------------------~n----- 174 (285)
T KOG4210|consen 167 RR--------------------------------GLRP-----------------------------------KN----- 174 (285)
T ss_pred cc--------------------------------cccc-----------------------------------cc-----
Confidence 00 0000 00
Q ss_pred eecCCCCCCCccccccCcceE-EEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHH
Q 011574 265 SWADPKSTPDHSAAASQVKAL-YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKD 341 (482)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l-~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~ 341 (482)
... ........++ +|.||++.+++++|+.+|..+|.|+.++++....+. ++||+|.|.+...+..++..
T Consensus 175 -------~~~-~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 175 -------KLS-RLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred -------hhc-ccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 000 0000112344 499999999999999999999999999999888765 99999999999999999986
Q ss_pred cCCceeCCcEEEEEEccCCCC
Q 011574 342 TEKYEIDGQVLEVVLAKPQTD 362 (482)
Q Consensus 342 l~~~~~~g~~l~v~~a~~~~~ 362 (482)
..+.+.++++.|....+...
T Consensus 247 -~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 247 -QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred -ccCcccCcccccccCCCCcc
Confidence 78899999999999876643
No 115
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.6e-10 Score=103.16 Aligned_cols=83 Identities=22% Similarity=0.462 Sum_probs=78.7
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
.++...|||..|.+-+|.++|.-+|+.||+|.+|.++++..||.+.-||||+|.+.+++++|.=.|++..|..+.|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 011574 183 SET 185 (482)
Q Consensus 183 ~~~ 185 (482)
+..
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 864
No 116
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.07 E-value=3.8e-10 Score=95.53 Aligned_cols=79 Identities=22% Similarity=0.450 Sum_probs=72.0
Q ss_pred ceEEEecCCCCCCHHHHHH----HHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 283 KALYVKNIPDNTSTEKIKE----LFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~----~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
.+|||.||...+..++|+. +|++||.|..|...... + +|-|||.|.+.+.|..|+..|+|..|-|++++|.+|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~--KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP--KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC--CccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 4999999999999999988 99999999999876554 4 799999999999999999999999999999999999
Q ss_pred cCCCCC
Q 011574 358 KPQTDK 363 (482)
Q Consensus 358 ~~~~~~ 363 (482)
..+..-
T Consensus 88 ~s~sdi 93 (221)
T KOG4206|consen 88 KSDSDI 93 (221)
T ss_pred cCccch
Confidence 877543
No 117
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=9.2e-10 Score=105.88 Aligned_cols=161 Identities=25% Similarity=0.442 Sum_probs=123.6
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
-....+||++||..+++.++++++..||.+....++.+..+|.++||||.+|.++.....|+..|||..+.++.|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 35567999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCcce-e---------eeCCCCC-----------------CCCHH-------------HHHHHHhhhCCcccEEEEeeC-
Q 011574 184 ETKNR-L---------FIGNVPK-----------------NWTED-------------EFRKVIEDVGPGVETIELIKD- 222 (482)
Q Consensus 184 ~~~~~-l---------~v~nLp~-----------------~~t~~-------------~l~~~f~~~G~~i~~~~~~~d- 222 (482)
-.... + -|-.|+. -++.+ +++.-+.+||. |..|.+.++
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~-v~~v~ipr~~ 445 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGA-VRSVEIPRPY 445 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCc-eeEEecCCCC
Confidence 43210 0 0111111 12222 22334557786 888888776
Q ss_pred CC-CCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeeeec
Q 011574 223 PQ-NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267 (482)
Q Consensus 223 ~~-~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~ 267 (482)
.. ......|..||+|.+.+++++|+++|.+. ++.++.+...+.
T Consensus 446 ~~~~~~~G~GkVFVefas~ed~qrA~~~L~Gr--KF~nRtVvtsYy 489 (500)
T KOG0120|consen 446 PDENPVPGTGKVFVEFADTEDSQRAMEELTGR--KFANRTVVASYY 489 (500)
T ss_pred CCCCcCCCcccEEEEecChHHHHHHHHHccCc--eeCCcEEEEEec
Confidence 21 22345678999999999999999999887 455666555443
No 118
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.05 E-value=7.5e-10 Score=92.03 Aligned_cols=81 Identities=28% Similarity=0.501 Sum_probs=74.7
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccC-CCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPI-GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~-G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
....++|..||.-+-+..|..+|.+| |.|..+++.+++.||.++|||||+|.+++.|.-|.+.||+..|.++-|.|..-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45678999999999999999999998 78899999999999999999999999999999999999999999999988765
Q ss_pred CC
Q 011574 184 ET 185 (482)
Q Consensus 184 ~~ 185 (482)
.+
T Consensus 128 pp 129 (214)
T KOG4208|consen 128 PP 129 (214)
T ss_pred Cc
Confidence 44
No 119
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=5.1e-11 Score=99.32 Aligned_cols=133 Identities=23% Similarity=0.390 Sum_probs=109.8
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
+..+||||.||-..++++-|.++|-+.|+|..|.|...+. +..+ ||||.|.++..+.-|++.+|+..|.++.|.|.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~- 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL- 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc-
Confidence 3458899999999999999999999999999999988776 6666 999999999999999999999888888776542
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCe
Q 011574 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (482)
Q Consensus 184 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (482)
T Consensus 84 -------------------------------------------------------------------------------- 83 (267)
T KOG4454|consen 84 -------------------------------------------------------------------------------- 83 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecCCCCCCCccccccCcceEEEec----CCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHH
Q 011574 264 ISWADPKSTPDHSAAASQVKALYVKN----IPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338 (482)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~v~n----lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A 338 (482)
+.++ |...++.+.+..+|+.-|.+..+++..+.+++ +.++||.+-...+.-.+
T Consensus 84 ----------------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 84 ----------------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred ----------------------ccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHH
Confidence 2222 34567788888999999999999999998877 88999988655555555
Q ss_pred HHH
Q 011574 339 VKD 341 (482)
Q Consensus 339 ~~~ 341 (482)
+..
T Consensus 142 ~~~ 144 (267)
T KOG4454|consen 142 LDL 144 (267)
T ss_pred hhh
Confidence 553
No 120
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.01 E-value=9.1e-10 Score=104.24 Aligned_cols=84 Identities=24% Similarity=0.477 Sum_probs=77.5
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 102 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
....+++|||.+|...+...+|+.+|++||+|+-.+++.+..+--.+.|+||++.+.++|.+||..||.+.|+|+-|.|.
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 34567899999999999999999999999999999999987776678899999999999999999999999999999999
Q ss_pred ecCC
Q 011574 182 LSET 185 (482)
Q Consensus 182 ~~~~ 185 (482)
.++.
T Consensus 481 kaKN 484 (940)
T KOG4661|consen 481 KAKN 484 (940)
T ss_pred eccc
Confidence 8763
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=1.3e-09 Score=97.55 Aligned_cols=77 Identities=26% Similarity=0.534 Sum_probs=69.6
Q ss_pred ccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHc-CCceeCCcEEEEEEc
Q 011574 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLA 357 (482)
Q Consensus 279 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l-~~~~~~g~~l~v~~a 357 (482)
....++|||++|-..+++.+|+++|-+||.|..|.+...+ ++|||+|.+.++|+.|..++ |...|+|++|+|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc----ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 3456899999999999999999999999999999998776 79999999999999988765 566789999999999
Q ss_pred cC
Q 011574 358 KP 359 (482)
Q Consensus 358 ~~ 359 (482)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 87
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=6.1e-10 Score=99.46 Aligned_cols=83 Identities=17% Similarity=0.329 Sum_probs=75.8
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
++.+.|||.-|.+-+|+++|.-+|+.||.|..|.|+++..+. -.||||+|.+.+++++|+-+|++..|+.+.|+|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 345789999999999999999999999999999999998765 679999999999999999999999999999999998
Q ss_pred cCCCC
Q 011574 358 KPQTD 362 (482)
Q Consensus 358 ~~~~~ 362 (482)
.+-..
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 65543
No 123
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.98 E-value=1.2e-09 Score=107.46 Aligned_cols=75 Identities=28% Similarity=0.562 Sum_probs=71.0
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
.++||||+.|+..+++.||..+|+.||.|.+|.++.. +++|||.+....+|.+||.+|++..+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 5789999999999999999999999999999999765 7799999999999999999999999999999999986
Q ss_pred C
Q 011574 185 T 185 (482)
Q Consensus 185 ~ 185 (482)
.
T Consensus 494 g 494 (894)
T KOG0132|consen 494 G 494 (894)
T ss_pred c
Confidence 4
No 124
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=7e-10 Score=110.83 Aligned_cols=161 Identities=21% Similarity=0.361 Sum_probs=131.8
Q ss_pred cceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeee
Q 011574 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (482)
Q Consensus 186 ~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (482)
..+||++||+..+++.+|+..|..+|. +..|.|.... .+.-..|+||.|.+...+..|...+....+.-.... +.
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gk-ve~VDiKtP~--~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r--~g 446 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGK-VEEVDIKTPH--IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR--IG 446 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhcc-ccccccccCC--CCcccchhhhhhhccccCcccchhhcCCccccCccc--cc
Confidence 478999999999999999999999998 8988887653 344456899999999999998888876644333332 22
Q ss_pred ecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCc
Q 011574 266 WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345 (482)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~ 345 (482)
+..+.. ...+.|||++|..++....|...|..||.|..|.+.... -||+|.|.+...|+.|++.|.+.
T Consensus 447 lG~~ks--------t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq----~yayi~yes~~~aq~a~~~~rga 514 (975)
T KOG0112|consen 447 LGQPKS--------TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ----PYAYIQYESPPAAQAATHDMRGA 514 (975)
T ss_pred cccccc--------ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC----cceeeecccCccchhhHHHHhcC
Confidence 222211 234789999999999999999999999999998886655 79999999999999999999999
Q ss_pred eeCC--cEEEEEEccCCCCC
Q 011574 346 EIDG--QVLEVVLAKPQTDK 363 (482)
Q Consensus 346 ~~~g--~~l~v~~a~~~~~~ 363 (482)
.|++ +.|+|.|+.+....
T Consensus 515 p~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 515 PLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred cCCCCCcccccccccCCCCC
Confidence 9987 88999999876543
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.91 E-value=3.8e-09 Score=87.93 Aligned_cols=79 Identities=23% Similarity=0.458 Sum_probs=71.7
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcc-cceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRH-GEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~-G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
...++|..+|..+.+..|..+|.+| |.|+.+++-+++. |+ ||||||+|++.+.|.-|.+.||+.-|.++.|.|.+..
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 4679999999999999999999998 7888899967665 44 9999999999999999999999999999999999986
Q ss_pred CC
Q 011574 359 PQ 360 (482)
Q Consensus 359 ~~ 360 (482)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 65
No 126
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=1.7e-10 Score=114.66 Aligned_cols=136 Identities=24% Similarity=0.310 Sum_probs=116.6
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...+++||+||+..+.+.+|...|..++.|..+.+....+.++.+|+|||.|..++++.+||.... ..+.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d-~~~~g-------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD-SCFFG-------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh-hhhhh--------
Confidence 345789999999999999999999999988888887777779999999999999999999996544 44444
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhcc
Q 011574 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (482)
Q Consensus 184 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 253 (482)
+..+||.|+|+..|.+.++.++..+|. +..++++.. ..++++|.++|.|.+..++..+...+...
T Consensus 736 --K~~v~i~g~pf~gt~e~~k~l~~~~gn-~~~~~~vt~--r~gkpkg~a~v~y~~ea~~s~~~~s~d~~ 800 (881)
T KOG0128|consen 736 --KISVAISGPPFQGTKEELKSLASKTGN-VTSLRLVTV--RAGKPKGKARVDYNTEADASRKVASVDVA 800 (881)
T ss_pred --hhhhheeCCCCCCchHHHHhhccccCC-ccccchhhh--hccccccceeccCCCcchhhhhcccchhh
Confidence 567899999999999999999999998 777776653 56899999999999999998887665544
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.89 E-value=2.7e-09 Score=101.11 Aligned_cols=77 Identities=23% Similarity=0.451 Sum_probs=71.8
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
.++|||.+|...+-..+|+.+|++||.|+..+|+.+.... ++|+||++.+..+|.+||..||.+.|.|+.|.|..++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 5789999999999999999999999999999888777544 9999999999999999999999999999999999886
No 128
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.86 E-value=6e-10 Score=100.87 Aligned_cols=211 Identities=15% Similarity=0.206 Sum_probs=130.0
Q ss_pred CEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCC---CCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES---GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~---g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
..|-|.||.+.+|.++|..||..+|+|..+.|+..... ......|||.|.+...+..|. .|.+++|-++.|.|.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 37999999999999999999999999999999874331 234568999999999998887 78889998998888765
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhcccc-ccCCCCC
Q 011574 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANF-KLDGNTP 262 (482)
Q Consensus 184 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~-~~~~~~~ 262 (482)
... +-+... +|..++..-..-.++.. -| |.|.+ ..+ .++..+.
T Consensus 87 ~~~-----------~~p~r~--af~~l~~~navprll~p-------dg---~Lp~~-------------~~lt~~nh~p~ 130 (479)
T KOG4676|consen 87 GDE-----------VIPDRF--AFVELADQNAVPRLLPP-------DG---VLPGD-------------RPLTKINHSPN 130 (479)
T ss_pred CCC-----------CCccHH--HHHhcCcccccccccCC-------CC---ccCCC-------------CccccccCCcc
Confidence 321 111111 33333320000000000 00 00000 000 0111111
Q ss_pred eeeecCCCCCCCcccc--ccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 011574 263 TISWADPKSTPDHSAA--ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (482)
Q Consensus 263 ~v~~~~~~~~~~~~~~--~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~ 340 (482)
. -+..|...+..... ....++|+|.+|+..+-..++.++|..+|.|....+..... ..+|-|.|........|+.
T Consensus 131 a-ilktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~--s~~c~~sf~~qts~~halr 207 (479)
T KOG4676|consen 131 A-ILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSR--SSSCSHSFRKQTSSKHALR 207 (479)
T ss_pred c-eecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC--CcchhhhHhhhhhHHHHHH
Confidence 1 11111111111111 11237899999999999999999999999998877654443 3678899988888888888
Q ss_pred HcCCceeCCcEEEEEEcc
Q 011574 341 DTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 341 ~l~~~~~~g~~l~v~~a~ 358 (482)
++|..+.-....+....
T Consensus 208 -~~gre~k~qhsr~ai~k 224 (479)
T KOG4676|consen 208 -SHGRERKRQHSRRAIIK 224 (479)
T ss_pred -hcchhhhhhhhhhhhcC
Confidence 67776654333333333
No 129
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.84 E-value=2.5e-08 Score=83.69 Aligned_cols=86 Identities=24% Similarity=0.443 Sum_probs=72.0
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCC-CCCC--CcEEEEEeCCHHHHHHHHHHcCCceeC---CcEEEE
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG-KSGK--RDFGFIHYAERSSALKAVKDTEKYEID---GQVLEV 354 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~---g~~l~v 354 (482)
..++|||.+||.++...+|..+|..|--.+...|... +.++ +.+|||.|.+...|++|+..|||..|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3689999999999999999999999976666655433 3333 789999999999999999999999986 689999
Q ss_pred EEccCCCCCCCC
Q 011574 355 VLAKPQTDKKTE 366 (482)
Q Consensus 355 ~~a~~~~~~~~~ 366 (482)
.+|+...+++..
T Consensus 113 ElAKSNtK~kr~ 124 (284)
T KOG1457|consen 113 ELAKSNTKRKRR 124 (284)
T ss_pred eehhcCcccccC
Confidence 999877665543
No 130
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=1.5e-08 Score=90.77 Aligned_cols=77 Identities=27% Similarity=0.505 Sum_probs=67.3
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHh-CCCCcCCeEEEEe
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRCS 181 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l-~~~~~~g~~l~v~ 181 (482)
....++|||++|-..+++.+|+++|-+||.|.+|.++.. +++|||+|.+.++|+.|...+ +...|.|++|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 345789999999999999999999999999999999876 459999999999999987654 4455799999999
Q ss_pred ecCC
Q 011574 182 LSET 185 (482)
Q Consensus 182 ~~~~ 185 (482)
|..+
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9876
No 131
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.77 E-value=7.3e-09 Score=94.95 Aligned_cols=85 Identities=25% Similarity=0.424 Sum_probs=76.2
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
..++|||++|++.++++.|+.+|.+||.|..+.|++++... ++|+||+|++++...++|. ...+.|.|+.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 45899999999999999999999999999999999998755 9999999999999988887 57789999999999999
Q ss_pred CCCCCCCC
Q 011574 359 PQTDKKTE 366 (482)
Q Consensus 359 ~~~~~~~~ 366 (482)
++......
T Consensus 84 ~r~~~~~~ 91 (311)
T KOG4205|consen 84 SREDQTKV 91 (311)
T ss_pred Cccccccc
Confidence 88765443
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.77 E-value=2.6e-08 Score=87.52 Aligned_cols=82 Identities=22% Similarity=0.410 Sum_probs=76.1
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
..+|+|.|||+.+++++|+++|..||.++.+.|..++.+. .|.|-|.|...++|.+|++.+|+..++|++|++....+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 3689999999999999999999999999999999999888 899999999999999999999999999999999988765
Q ss_pred CCC
Q 011574 361 TDK 363 (482)
Q Consensus 361 ~~~ 363 (482)
...
T Consensus 163 ~~~ 165 (243)
T KOG0533|consen 163 SQS 165 (243)
T ss_pred ccc
Confidence 443
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.75 E-value=3.8e-08 Score=86.51 Aligned_cols=82 Identities=24% Similarity=0.447 Sum_probs=74.1
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|+|.|||+.++++||++||..||.+..+.+-.++. |++.|+|-|.|...++|..|++.+++..|.|+.|.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 34458899999999999999999999999888888888776 99999999999999999999999999999999998876
Q ss_pred cCC
Q 011574 183 SET 185 (482)
Q Consensus 183 ~~~ 185 (482)
...
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 543
No 134
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.73 E-value=9.3e-09 Score=88.11 Aligned_cols=135 Identities=8% Similarity=0.175 Sum_probs=97.4
Q ss_pred CCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeeeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHh
Q 011574 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ 304 (482)
Q Consensus 225 ~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~ 304 (482)
..+.-++++|+.|.....-.++-..-..+ .+....++......-..+....-.....+||.+.|...++++.|-..|.
T Consensus 135 ~p~~~~~~~~~~~k~s~a~~k~~~~~~~K--ki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~ 212 (290)
T KOG0226|consen 135 RPQPIRPEAFESFKASDALLKAETEKEKK--KIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFK 212 (290)
T ss_pred CCCccCcccccCcchhhhhhhhccccccc--cccCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHH
Confidence 34566788999887665555444333322 2222223332222222222222234457899999999999999999999
Q ss_pred cccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCC
Q 011574 305 RHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (482)
Q Consensus 305 ~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 361 (482)
+|-.....++++++.+. +||+||.|.++.++..|+..|+|..++.++|++.....+.
T Consensus 213 Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 213 KFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred hccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 99888888888888644 9999999999999999999999999999999998776554
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=1.6e-08 Score=101.29 Aligned_cols=161 Identities=19% Similarity=0.269 Sum_probs=133.1
Q ss_pred CCCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEE
Q 011574 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (482)
Q Consensus 101 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v 180 (482)
.+....+|||++||+..+++.+|+..|..+|.|..|.|-.-.. +.-.-|+||.|.+...+-+|+..+.+..|..-.+++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 3444678999999999999999999999999999998866533 445568999999999999999888888775444444
Q ss_pred ee----cCCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccc
Q 011574 181 SL----SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK 256 (482)
Q Consensus 181 ~~----~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~ 256 (482)
.+ +...+.++++.|+.-+....|...|..||. |..|.+-. ...|++|.|.+...+..|.+.|.+-.+.
T Consensus 446 glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGp-ir~Idy~h-------gq~yayi~yes~~~aq~a~~~~rgap~G 517 (975)
T KOG0112|consen 446 GLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGP-IRIIDYRH-------GQPYAYIQYESPPAAQAATHDMRGAPLG 517 (975)
T ss_pred cccccccccceeeccCCCCCCChHHHHHHHhhccCc-ceeeeccc-------CCcceeeecccCccchhhHHHHhcCcCC
Confidence 43 345678999999999999999999999998 77776633 3459999999999999999999888777
Q ss_pred cCCCCCeeeecCCC
Q 011574 257 LDGNTPTISWADPK 270 (482)
Q Consensus 257 ~~~~~~~v~~~~~~ 270 (482)
--.+.+.|.++.+.
T Consensus 518 ~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 518 GPPRRLRVDLASPP 531 (975)
T ss_pred CCCcccccccccCC
Confidence 77778888887655
No 136
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.69 E-value=1.3e-07 Score=70.80 Aligned_cols=78 Identities=23% Similarity=0.279 Sum_probs=66.4
Q ss_pred CEEEECCCCCCCCHHHHHHhhccC--CCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcC----CeEEEE
Q 011574 107 SEVFIGGLPKDASEEDLRDLCEPI--GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK----GKTIRC 180 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~~~f~~~--G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~----g~~l~v 180 (482)
|||.|+|||...|.++|.+++... |...-+-+..|..++.+.|||||.|.+++.|.+..+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999888543 56666788888888999999999999999999999999998874 455566
Q ss_pred eecC
Q 011574 181 SLSE 184 (482)
Q Consensus 181 ~~~~ 184 (482)
.+|+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6654
No 137
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.64 E-value=7.9e-08 Score=86.21 Aligned_cols=79 Identities=27% Similarity=0.383 Sum_probs=73.1
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccccee--------EEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEE
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVT--------KVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~--------~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l 352 (482)
.+.|||.|||.++|.+++.++|++||.|. .|+|.++..|. ||=|.|.|-..+++..||+.|++..|.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 46799999999999999999999999886 58888999888 9999999999999999999999999999999
Q ss_pred EEEEccCC
Q 011574 353 EVVLAKPQ 360 (482)
Q Consensus 353 ~v~~a~~~ 360 (482)
+|..|+=.
T Consensus 214 rVerAkfq 221 (382)
T KOG1548|consen 214 RVERAKFQ 221 (382)
T ss_pred EEehhhhh
Confidence 99998643
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.63 E-value=2.3e-07 Score=69.53 Aligned_cols=78 Identities=18% Similarity=0.360 Sum_probs=67.5
Q ss_pred ceEEEecCCCCCCHHHHHHHHhc--ccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeC----CcEEEE
Q 011574 283 KALYVKNIPDNTSTEKIKELFQR--HGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEID----GQVLEV 354 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~--~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~----g~~l~v 354 (482)
++|.|+|||...|.++|.+++.. .|....+.|+.|.... .|||||-|.+++.|.+-.+.++|+.+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998876 3677778888887654 899999999999999999999999876 578899
Q ss_pred EEccCC
Q 011574 355 VLAKPQ 360 (482)
Q Consensus 355 ~~a~~~ 360 (482)
.+|+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 998644
No 139
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.60 E-value=7.8e-08 Score=85.04 Aligned_cols=80 Identities=29% Similarity=0.451 Sum_probs=74.9
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
.+.+.|||+|+.+.+|.++|..+|+.||.|..|.+..++.++.++||+||+|.+.+.+.+||. |++..|.++.|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 356789999999999999999999999999999999999999999999999999999999996 9999999999998865
Q ss_pred C
Q 011574 184 E 184 (482)
Q Consensus 184 ~ 184 (482)
.
T Consensus 178 r 178 (231)
T KOG4209|consen 178 R 178 (231)
T ss_pred e
Confidence 4
No 140
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=2.2e-08 Score=83.85 Aligned_cols=79 Identities=23% Similarity=0.348 Sum_probs=72.8
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
..++|||.||...++++.|.++|-+-|.|..|.|+.++.+.-.||||.|.+.....-|+..+||..+.+..|.|.+-..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 3479999999999999999999999999999999999988833999999999999999999999999999999988653
No 141
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.59 E-value=9e-08 Score=91.29 Aligned_cols=78 Identities=23% Similarity=0.470 Sum_probs=66.3
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...+|||+|||++++..+|+++|+.||.|....|......++...||||+|.+..+++.||.+ +...|.+++|.|+.-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 455699999999999999999999999999888866543344458999999999999999976 678889999988753
No 142
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.59 E-value=4.7e-08 Score=83.85 Aligned_cols=84 Identities=24% Similarity=0.429 Sum_probs=77.1
Q ss_pred cCCCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEE
Q 011574 100 LALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (482)
Q Consensus 100 ~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~ 179 (482)
...+.+..+||++.|..+++.+-|-..|++|-.-...++++++.||+++||+||.|.++.++..|++.|++..+..+.|.
T Consensus 184 ~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 184 AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIK 263 (290)
T ss_pred ccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhH
Confidence 34455678999999999999999999999999888899999999999999999999999999999999999999999988
Q ss_pred Eeec
Q 011574 180 CSLS 183 (482)
Q Consensus 180 v~~~ 183 (482)
...+
T Consensus 264 lRkS 267 (290)
T KOG0226|consen 264 LRKS 267 (290)
T ss_pred hhhh
Confidence 7654
No 143
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.59 E-value=3.1e-07 Score=64.95 Aligned_cols=70 Identities=26% Similarity=0.528 Sum_probs=48.5
Q ss_pred CEEEECCCCCCCCHHHHH----HhhccCC-CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 107 SEVFIGGLPKDASEEDLR----DLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~----~~f~~~G-~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
+.|+|.|||.+.+...|+ .++..|| +|..|. .+.|+|.|.+++.|.+|++.|++..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 569999999999887765 5556776 666552 3579999999999999999999999999999999
Q ss_pred ecCCc
Q 011574 182 LSETK 186 (482)
Q Consensus 182 ~~~~~ 186 (482)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87543
No 144
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.55 E-value=4.5e-07 Score=64.15 Aligned_cols=70 Identities=23% Similarity=0.387 Sum_probs=49.0
Q ss_pred ceEEEecCCCCCCHHH----HHHHHhccc-ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 283 KALYVKNIPDNTSTEK----IKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~----l~~~F~~~G-~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
..|+|.|||....... |++++..|| .|..|. .+.|+|.|.+.+.|.+|.+.|+|..+-|+.|.|+|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 4699999999887755 567777886 777773 167999999999999999999999999999999998
Q ss_pred cCC
Q 011574 358 KPQ 360 (482)
Q Consensus 358 ~~~ 360 (482)
...
T Consensus 75 ~~~ 77 (90)
T PF11608_consen 75 PKN 77 (90)
T ss_dssp --S
T ss_pred CCc
Confidence 433
No 145
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.52 E-value=1.6e-07 Score=80.63 Aligned_cols=73 Identities=23% Similarity=0.453 Sum_probs=66.6
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCC
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 361 (482)
..|||++||+.+.+.+|..||..||.|..|.+.. +|+||+|.+..+|..|+..||+..|.+-.+.|.++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec------ccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 4799999999999999999999999999987744 789999999999999999999999999889999987543
No 146
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.48 E-value=4.4e-07 Score=82.39 Aligned_cols=83 Identities=19% Similarity=0.311 Sum_probs=73.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccccee--------EEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--------KVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~--------~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g 349 (482)
....+|||.+||..++.++|.++|.+||.|. .|.|.+++.+. |+-|.|.|.+...|+.||..+++..|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 4457899999999999999999999999886 46666777554 9999999999999999999999999999
Q ss_pred cEEEEEEccCCCC
Q 011574 350 QVLEVVLAKPQTD 362 (482)
Q Consensus 350 ~~l~v~~a~~~~~ 362 (482)
.+|+|.+|..+..
T Consensus 144 n~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 144 NTIKVSLAERRTG 156 (351)
T ss_pred CCchhhhhhhccC
Confidence 9999999986653
No 147
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.47 E-value=3.9e-08 Score=90.16 Aligned_cols=155 Identities=19% Similarity=0.308 Sum_probs=123.2
Q ss_pred ceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeeee
Q 011574 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (482)
Q Consensus 187 ~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (482)
++||++||.+.++..+|..+|.........-.+++ .+|+||.+.+...|.+|++.++++ ..+.|..+.+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k--------~gyafvd~pdq~wa~kaie~~sgk-~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK--------SGYAFVDCPDQQWANKAIETLSGK-VELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee--------cceeeccCCchhhhhhhHHhhchh-hhhcCceeeccc
Confidence 47899999999999999999987643222222322 479999999999999999998764 567788777776
Q ss_pred cCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCC-CCCCCCcEEEEEeCCHHHHHHHHHHcCCc
Q 011574 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPP-GKSGKRDFGFIHYAERSSALKAVKDTEKY 345 (482)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~-~~~~~kg~afV~f~~~e~A~~A~~~l~~~ 345 (482)
..++.. .++++-|+|+|...-|+.|..+..+||.|..|.... +..+ -..-|+|.+.+.+..||.+|+++
T Consensus 73 sv~kkq--------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et--avvnvty~~~~~~~~ai~kl~g~ 142 (584)
T KOG2193|consen 73 SVPKKQ--------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET--AVVNVTYSAQQQHRQAIHKLNGP 142 (584)
T ss_pred hhhHHH--------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH--HHHHHHHHHHHHHHHHHHhhcch
Confidence 655543 236799999999999999999999999999886533 2222 33457889999999999999999
Q ss_pred eeCCcEEEEEEccCC
Q 011574 346 EIDGQVLEVVLAKPQ 360 (482)
Q Consensus 346 ~~~g~~l~v~~a~~~ 360 (482)
.|....++|.|-...
T Consensus 143 Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 143 QLENQHLKVGYIPDE 157 (584)
T ss_pred HhhhhhhhcccCchh
Confidence 999999999887443
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.46 E-value=4.6e-07 Score=80.19 Aligned_cols=80 Identities=23% Similarity=0.394 Sum_probs=73.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
.....+||+|+.+.+|.++|...|+.||.|..|.|+.++... |+|+||+|.+.+.+..|+. |++..|.++.|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 345789999999999999999999999999999999888753 9999999999999999999 9999999999999998
Q ss_pred cCC
Q 011574 358 KPQ 360 (482)
Q Consensus 358 ~~~ 360 (482)
+..
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 655
No 149
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=2e-07 Score=89.15 Aligned_cols=71 Identities=25% Similarity=0.455 Sum_probs=65.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEE
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~ 353 (482)
....+|+|-|||..++.++|+.+|+.||+|..|+..+.+ ++.+||+|-++.+|++|++.|++..|.|+.|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~---~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK---RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc---CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 445899999999999999999999999999998766555 47999999999999999999999999999888
No 150
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=98.42 E-value=2.9e-06 Score=76.12 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 011574 397 GTGFGVAAGFQQPMIYGRG 415 (482)
Q Consensus 397 g~g~g~~~g~~~~~~~g~~ 415 (482)
|+|.|++++|++|+.|..+
T Consensus 375 ggG~GGGggyqqp~~~~~~ 393 (465)
T KOG3973|consen 375 GGGRGGGGGYQQPQQQQQQ 393 (465)
T ss_pred CCCCCCCCCCcCchhhhhc
Confidence 3555666778877766543
No 151
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.33 E-value=1.5e-05 Score=71.72 Aligned_cols=73 Identities=15% Similarity=0.263 Sum_probs=60.5
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccc--ceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEE
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~ 355 (482)
.++||+||-|++|+++|.+.....| .|..++++.++. +. ||||.|-..+..+.++.++.|-.++|.|..-.|.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 5899999999999999999998877 455666666654 44 9999999999999999999999999998655443
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.26 E-value=2.2e-06 Score=66.03 Aligned_cols=71 Identities=28% Similarity=0.438 Sum_probs=46.0
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcC-----CceeCCcEEEEEEc
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE-----KYEIDGQVLEVVLA 357 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~-----~~~~~g~~l~v~~a 357 (482)
..|+|.+++..++.++|+++|++||.|..|.+.... ..|||.|.+.+.|++|+..+. +..|.+..+.+..-
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~----~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD----TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC----CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 468999999999999999999999999999998776 679999999999999998764 33667777766653
No 153
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.26 E-value=6.1e-07 Score=77.32 Aligned_cols=74 Identities=26% Similarity=0.395 Sum_probs=63.1
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCC--------CCcc----ceEEEEeCCHHHHHHHHHHhCCCC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES--------GESK----GFAFVSFRSKEFAKKAIDELHSKE 172 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~--------g~~~----g~afV~f~~~e~A~~al~~l~~~~ 172 (482)
..-.|||++||+.+...-|+++|+.||.|-.|.|.....+ |.+. .-++|+|.+...|+++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3467999999999999999999999999999999876554 2222 238899999999999999999999
Q ss_pred cCCeEE
Q 011574 173 LKGKTI 178 (482)
Q Consensus 173 ~~g~~l 178 (482)
|.|++-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 988754
No 154
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.26 E-value=1.9e-06 Score=84.46 Aligned_cols=82 Identities=18% Similarity=0.337 Sum_probs=71.9
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCC---CCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEE
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKE---SGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~ 179 (482)
.+..++|||.||++.++++.|...|..||+|.+|+|+.-.. ..+.+-++||.|-+..+|++|++.|++..+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 34568899999999999999999999999999999876321 234566999999999999999999999999999999
Q ss_pred EeecC
Q 011574 180 CSLSE 184 (482)
Q Consensus 180 v~~~~ 184 (482)
+-|.+
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 99874
No 155
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.25 E-value=3.4e-06 Score=82.78 Aligned_cols=82 Identities=21% Similarity=0.339 Sum_probs=73.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC----CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEE
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS----GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~----~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v 354 (482)
...++|||+||++.++++.|...|..||.|..|+|+..+. .+ +.|+||.|-+..+|++|++.|+|..+....+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 4568999999999999999999999999999998876543 22 789999999999999999999999999999999
Q ss_pred EEccCCC
Q 011574 355 VLAKPQT 361 (482)
Q Consensus 355 ~~a~~~~ 361 (482)
-|++.-.
T Consensus 252 gWgk~V~ 258 (877)
T KOG0151|consen 252 GWGKAVP 258 (877)
T ss_pred ccccccc
Confidence 9986543
No 156
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.17 E-value=1.6e-06 Score=78.79 Aligned_cols=83 Identities=33% Similarity=0.514 Sum_probs=75.4
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCee--------EEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCe
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVF--------EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~--------~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~ 176 (482)
...+|||.+||..+++++|.++|.+++.|. .|+|.+++.|++.++-|.|.|.+...|+.|+.-+++..|.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 456799999999999999999999999873 478888999999999999999999999999999999999999
Q ss_pred EEEEeecCCcc
Q 011574 177 TIRCSLSETKN 187 (482)
Q Consensus 177 ~l~v~~~~~~~ 187 (482)
+|+|.++...+
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998876543
No 157
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.14 E-value=6.3e-06 Score=63.50 Aligned_cols=60 Identities=27% Similarity=0.468 Sum_probs=39.9
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~ 171 (482)
++.|+|.+++..++.++|+++|+.||.|..|.+..... .|||.|.+++.|+.|++.+...
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 36799999999999999999999999999999876433 7999999999999999876654
No 158
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.13 E-value=2.5e-05 Score=79.42 Aligned_cols=10 Identities=20% Similarity=0.205 Sum_probs=3.6
Q ss_pred CcceEEEEeC
Q 011574 229 NRGFSFVLYY 238 (482)
Q Consensus 229 ~~g~afv~f~ 238 (482)
.++|+--.|.
T Consensus 901 q~~~~g~kfs 910 (1282)
T KOG0921|consen 901 QRKFAGNKFS 910 (1282)
T ss_pred hhhccccccc
Confidence 3333333333
No 159
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.87 E-value=0.00038 Score=64.88 Aligned_cols=66 Identities=18% Similarity=0.324 Sum_probs=55.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCC---CC---C---------CCcEEEEEeCCHHHHHHHHHHcCC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG---KS---G---------KRDFGFIHYAERSSALKAVKDTEK 344 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~---~---------~kg~afV~f~~~e~A~~A~~~l~~ 344 (482)
.+.++|.+.|||.+-.-+.|.++|..||.|..|+|..- .. + .+-+|||+|...+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 45689999999999888999999999999999999765 11 1 145799999999999999998764
Q ss_pred c
Q 011574 345 Y 345 (482)
Q Consensus 345 ~ 345 (482)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 4
No 160
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.85 E-value=4.3e-06 Score=77.07 Aligned_cols=136 Identities=23% Similarity=0.340 Sum_probs=104.7
Q ss_pred EEEECCCCCCCCHHHHHHhhccCCC-eeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCC-cCCeEEEEeecCC
Q 011574 108 EVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKGKTIRCSLSET 185 (482)
Q Consensus 108 ~v~v~nLp~~~t~~~l~~~f~~~G~-v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~-~~g~~l~v~~~~~ 185 (482)
.+|++||.+.++..+|..+|...-. ...-.++ ..||+||.+.+...|.+|++.++++. +.|+++.|..+-+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 5899999999999999999976421 1111122 25799999999999999999999875 8999999988765
Q ss_pred c----ceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhcccc
Q 011574 186 K----NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANF 255 (482)
Q Consensus 186 ~----~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~ 255 (482)
+ +++-|.|+|+...++-|..|+..+|. ++.|..+.. ..-....-|+|.+.+.+..|+..+++..+
T Consensus 76 kkqrsrk~Qirnippql~wevld~Ll~qyg~-ve~~eqvnt----~~etavvnvty~~~~~~~~ai~kl~g~Q~ 144 (584)
T KOG2193|consen 76 KKQRSRKIQIRNIPPQLQWEVLDSLLAQYGT-VENCEQVNT----DSETAVVNVTYSAQQQHRQAIHKLNGPQL 144 (584)
T ss_pred HHHHhhhhhHhcCCHHHHHHHHHHHHhccCC-HhHhhhhcc----chHHHHHHHHHHHHHHHHHHHHhhcchHh
Confidence 4 67999999999999999999999998 777765321 11122234577777888888888876544
No 161
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.85 E-value=0.00015 Score=65.43 Aligned_cols=7 Identities=14% Similarity=0.567 Sum_probs=3.2
Q ss_pred HHHHHHh
Q 011574 298 KIKELFQ 304 (482)
Q Consensus 298 ~l~~~F~ 304 (482)
+|...|+
T Consensus 244 ei~~~~~ 250 (465)
T KOG3973|consen 244 EIQSILS 250 (465)
T ss_pred HHHHHHH
Confidence 4444443
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.83 E-value=5.6e-05 Score=50.09 Aligned_cols=52 Identities=25% Similarity=0.511 Sum_probs=43.1
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHH
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~ 339 (482)
+.|.|.+.+....+. |..+|.+||.|..+.+.... .+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~----~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST----NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC----cEEEEEECCHHHHHhhC
Confidence 568889998776554 55689999999999998443 68999999999999985
No 163
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.77 E-value=5.3e-05 Score=68.00 Aligned_cols=88 Identities=20% Similarity=0.436 Sum_probs=65.0
Q ss_pred CEEEECCCCCCCCHHH----H--HHhhccCCCeeEEEEeccCCCCC-ccce--EEEEeCCHHHHHHHHHHhCCCCcCCeE
Q 011574 107 SEVFIGGLPKDASEED----L--RDLCEPIGDVFEVRLMKDKESGE-SKGF--AFVSFRSKEFAKKAIDELHSKELKGKT 177 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~----l--~~~f~~~G~v~~v~~~~~~~~g~-~~g~--afV~f~~~e~A~~al~~l~~~~~~g~~ 177 (482)
.-|||-+||+.+..++ | .++|.+||.|..|.+-+...+-. ..+. .||+|.+.++|.+||...++..+.||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 3578999998887666 2 27999999998887755331111 1222 499999999999999999999999999
Q ss_pred EEEeecCCc-ceeeeCCC
Q 011574 178 IRCSLSETK-NRLFIGNV 194 (482)
Q Consensus 178 l~v~~~~~~-~~l~v~nL 194 (482)
|+..+-..+ ++.|++|+
T Consensus 195 lkatYGTTKYCtsYLRn~ 212 (480)
T COG5175 195 LKATYGTTKYCTSYLRNA 212 (480)
T ss_pred EeeecCchHHHHHHHcCC
Confidence 999876544 33344443
No 164
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.76 E-value=4.3e-05 Score=68.89 Aligned_cols=79 Identities=19% Similarity=0.388 Sum_probs=70.5
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCC--CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G--~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
.-++||+||-|.+|.+||.+.+...| .+.+++++.++..|.++|||+|...+..++++.++.|-.+.|+|..-.|..+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 35789999999999999999998888 6788999999999999999999999999999999999999999887666544
Q ss_pred C
Q 011574 184 E 184 (482)
Q Consensus 184 ~ 184 (482)
+
T Consensus 160 N 160 (498)
T KOG4849|consen 160 N 160 (498)
T ss_pred c
Confidence 3
No 165
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00015 Score=69.82 Aligned_cols=75 Identities=23% Similarity=0.394 Sum_probs=63.4
Q ss_pred ceEEEecCCCCCCH------HHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeC-CcEEEE
Q 011574 283 KALYVKNIPDNTST------EKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEID-GQVLEV 354 (482)
Q Consensus 283 ~~l~v~nlp~~~t~------~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~-g~~l~v 354 (482)
..|+|.|+|---.. ..|.++|+++|.|+.+.++.+..++ +||.|++|++..+|..|++.|||+.|. .++..|
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v 138 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFV 138 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEe
Confidence 68999999843222 3477899999999999999888877 999999999999999999999999885 577777
Q ss_pred EEc
Q 011574 355 VLA 357 (482)
Q Consensus 355 ~~a 357 (482)
..-
T Consensus 139 ~~f 141 (698)
T KOG2314|consen 139 RLF 141 (698)
T ss_pred ehh
Confidence 654
No 166
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.64 E-value=0.00012 Score=48.55 Aligned_cols=52 Identities=17% Similarity=0.500 Sum_probs=42.7
Q ss_pred CEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHH
Q 011574 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al 165 (482)
+.|-|.+.+++..+ .|..+|..||+|..+.+... .-+.||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 57899999988765 45558999999999888632 348999999999999986
No 167
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.61 E-value=4.1e-05 Score=70.35 Aligned_cols=80 Identities=31% Similarity=0.609 Sum_probs=72.1
Q ss_pred CCEEE-ECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 106 GSEVF-IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 106 ~~~v~-v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
..++| |.+|+++++.++|+.+|..+|.|..+++..+..++.++|+|||.|.+...+..++.. ....+.++++.+....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 34455 999999999999999999999999999999999999999999999999999999966 7788899999988766
Q ss_pred Cc
Q 011574 185 TK 186 (482)
Q Consensus 185 ~~ 186 (482)
..
T Consensus 263 ~~ 264 (285)
T KOG4210|consen 263 PR 264 (285)
T ss_pred CC
Confidence 43
No 168
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.61 E-value=0.00016 Score=65.06 Aligned_cols=79 Identities=23% Similarity=0.491 Sum_probs=64.1
Q ss_pred cceEEEecCCCCCCHHH----H--HHHHhcccceeEEEcCCCCCC--C-CcEE--EEEeCCHHHHHHHHHHcCCceeCCc
Q 011574 282 VKALYVKNIPDNTSTEK----I--KELFQRHGEVTKVVMPPGKSG--K-RDFG--FIHYAERSSALKAVKDTEKYEIDGQ 350 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~----l--~~~F~~~G~v~~v~i~~~~~~--~-kg~a--fV~f~~~e~A~~A~~~l~~~~~~g~ 350 (482)
.+-+||-+|++.+..++ | .++|.+||.|..|.|-+.... . .+.+ ||+|.+.++|.+||...+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35689999998887766 2 479999999999988765421 1 2323 9999999999999999999999999
Q ss_pred EEEEEEccCC
Q 011574 351 VLEVVLAKPQ 360 (482)
Q Consensus 351 ~l~v~~a~~~ 360 (482)
.|+..+...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999987533
No 169
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.55 E-value=0.00019 Score=69.49 Aligned_cols=77 Identities=23% Similarity=0.298 Sum_probs=63.3
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhc-cCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCc---CCeEEE
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCE-PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL---KGKTIR 179 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~-~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~---~g~~l~ 179 (482)
..+..|+|.||-.-+|.-+|+.|+. .+|.|...+| |+. +..|||.|.+.++|...+.+||+..| +.+.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHh----hcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 3567899999999999999999998 5667777643 332 45799999999999999999999987 678888
Q ss_pred EeecCCc
Q 011574 180 CSLSETK 186 (482)
Q Consensus 180 v~~~~~~ 186 (482)
|.+....
T Consensus 516 adf~~~d 522 (718)
T KOG2416|consen 516 ADFVRAD 522 (718)
T ss_pred eeecchh
Confidence 8876543
No 170
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.54 E-value=0.00054 Score=51.88 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=51.5
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEE-cCCC-------CCC-CCcEEEEEeCCHHHHHHHHHHcCCceeCCc-E
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVV-MPPG-------KSG-KRDFGFIHYAERSSALKAVKDTEKYEIDGQ-V 351 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~-i~~~-------~~~-~kg~afV~f~~~e~A~~A~~~l~~~~~~g~-~ 351 (482)
.+-|.|-+.|.. ....|.++|++||.|.+.. +.++ ... ...+..|+|.++.+|.+||. .||..|.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 356889999987 4566788999999998774 2221 111 14789999999999999999 699999885 4
Q ss_pred EEEEEcc
Q 011574 352 LEVVLAK 358 (482)
Q Consensus 352 l~v~~a~ 358 (482)
+-|.+..
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5576663
No 171
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.47 E-value=0.00033 Score=60.88 Aligned_cols=92 Identities=18% Similarity=0.299 Sum_probs=79.0
Q ss_pred HHHHHHHHhCCCCcCCeEEEEeecCCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCC
Q 011574 160 FAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYN 239 (482)
Q Consensus 160 ~A~~al~~l~~~~~~g~~l~v~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~ 239 (482)
-|..|...|++....++.|+|.++.. ..|+|.||+..+..+.+...|+.||+ |....++.| ..++..+-++|.|..
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~-~e~av~~vD--~r~k~t~eg~v~~~~ 81 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGP-IERAVAKVD--DRGKPTREGIVEFAK 81 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCc-cchheeeec--ccccccccchhhhhc
Confidence 45666667899999999999999998 99999999999999999999999998 766666665 457788899999999
Q ss_pred HHHHHHHHHHHhcccc
Q 011574 240 NACADYSRQKMLNANF 255 (482)
Q Consensus 240 ~~~a~~a~~~~~~~~~ 255 (482)
.-.+.+|+.......+
T Consensus 82 k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 82 KPNARKAARRCREGGF 97 (275)
T ss_pred chhHHHHHHHhccCcc
Confidence 9999999988755443
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.45 E-value=0.00061 Score=54.75 Aligned_cols=56 Identities=23% Similarity=0.441 Sum_probs=46.4
Q ss_pred HHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 298 KIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 298 ~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
+|.+.|.+||.|.-|++..+. -+|+|.+-+.|.+|+. ++|..|+|+.|+|++..+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~~------mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGDT------MWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETTC------EEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCCe------EEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 678889999999988877654 7999999999999999 8999999999999998754
No 173
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.41 E-value=7.8e-05 Score=64.87 Aligned_cols=64 Identities=13% Similarity=0.201 Sum_probs=54.3
Q ss_pred HHHHHHHh-cccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 297 EKIKELFQ-RHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 297 ~~l~~~F~-~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
++|...|+ +||.|+.+.|..+..-. +|-++|.|...++|++|+..||+.+|.|++|...+..-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 45555555 89999999887776555 888999999999999999999999999999999997543
No 174
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.40 E-value=0.00041 Score=60.36 Aligned_cols=102 Identities=21% Similarity=0.352 Sum_probs=78.4
Q ss_pred HHHHHHHHHhccccccCCCCCeeeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC
Q 011574 242 CADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321 (482)
Q Consensus 242 ~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~ 321 (482)
-|..|...|.+. ...++.+.|.++.. ..|+|.||...++.+.|.+.|+.||.|....+..+..++
T Consensus 6 ~ae~ak~eLd~~--~~~~~~lr~rfa~~-------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k 70 (275)
T KOG0115|consen 6 LAEIAKRELDGR--FPKGRSLRVRFAMH-------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGK 70 (275)
T ss_pred HHHHHHHhcCCC--CCCCCceEEEeecc-------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccccc
Confidence 345555555443 55678888887643 479999999999999999999999999988777777666
Q ss_pred -CcEEEEEeCCHHHHHHHHHHcCC----ceeCCcEEEEEEcc
Q 011574 322 -RDFGFIHYAERSSALKAVKDTEK----YEIDGQVLEVVLAK 358 (482)
Q Consensus 322 -kg~afV~f~~~e~A~~A~~~l~~----~~~~g~~l~v~~a~ 358 (482)
.+-++|.|...-.|.+|+..++- .+..++++-|....
T Consensus 71 ~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 71 PTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred ccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhh
Confidence 78899999999999999988742 24455666665544
No 175
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00048 Score=66.44 Aligned_cols=77 Identities=31% Similarity=0.420 Sum_probs=62.8
Q ss_pred CCCEEEECCCCCC--CCH----HHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcC-CeE
Q 011574 105 NGSEVFIGGLPKD--ASE----EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKT 177 (482)
Q Consensus 105 ~~~~v~v~nLp~~--~t~----~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~-g~~ 177 (482)
-.+.|+|.|+|.- ... .-|.++|+++|+|+.+.+..+.. |.++||.|++|.+..+|+.|++.|||+.|. .++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3468999999963 222 34568999999999999998887 459999999999999999999999999874 566
Q ss_pred EEEee
Q 011574 178 IRCSL 182 (482)
Q Consensus 178 l~v~~ 182 (482)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66654
No 176
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.29 E-value=0.0007 Score=59.89 Aligned_cols=63 Identities=24% Similarity=0.274 Sum_probs=52.9
Q ss_pred HHHHHHHHhcccceeEEEcCCCCCCC---CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 296 TEKIKELFQRHGEVTKVVMPPGKSGK---RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 296 ~~~l~~~F~~~G~v~~v~i~~~~~~~---kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
+++++..+.+||.|..|.|....... ---.||+|...++|.+|+-.|||+.|+||.++..|.+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 35688999999999999887665432 2347999999999999999999999999999887764
No 177
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.25 E-value=0.00018 Score=62.44 Aligned_cols=69 Identities=20% Similarity=0.456 Sum_probs=59.6
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC----------C--C--cEEEEEeCCHHHHHHHHHHcCCceeC
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG----------K--R--DFGFIHYAERSSALKAVKDTEKYEID 348 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~----------~--k--g~afV~f~~~e~A~~A~~~l~~~~~~ 348 (482)
-.||+++||+.+.-.-|+++|++||.|-+|.|.+.... + . .-|.|+|.+...|.++...||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 57999999999999999999999999999998764432 1 1 23789999999999999999999999
Q ss_pred CcE
Q 011574 349 GQV 351 (482)
Q Consensus 349 g~~ 351 (482)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 863
No 178
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.20 E-value=0.00091 Score=65.01 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=66.1
Q ss_pred cccCcceEEEecCCCCCCHHHHHHHHh-cccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCcee---CCcEEE
Q 011574 278 AASQVKALYVKNIPDNTSTEKIKELFQ-RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI---DGQVLE 353 (482)
Q Consensus 278 ~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~---~g~~l~ 353 (482)
....++.|+|.||-..+|.-+|+.++. .+|.|+...|..-+ ..|||.|.+.++|...+.+|||..| +.+.|.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK----ShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK----SHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh----cceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 345568899999999999999999999 57788877664444 6799999999999999999999976 568899
Q ss_pred EEEccCC
Q 011574 354 VVLAKPQ 360 (482)
Q Consensus 354 v~~a~~~ 360 (482)
+.|+...
T Consensus 516 adf~~~d 522 (718)
T KOG2416|consen 516 ADFVRAD 522 (718)
T ss_pred eeecchh
Confidence 9998644
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.12 E-value=0.0016 Score=49.29 Aligned_cols=78 Identities=10% Similarity=0.206 Sum_probs=51.5
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEe-ccC------CCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeE
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLM-KDK------ESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~-~~~------~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~ 177 (482)
..+.|.|-+.|+. ....|..+|++||.|.+..-. ++. ..-.......|+|.++.+|.+|| ..||..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 3567999999998 456788899999999877511 000 00112348999999999999999 55999998865
Q ss_pred EE-EeecC
Q 011574 178 IR-CSLSE 184 (482)
Q Consensus 178 l~-v~~~~ 184 (482)
+- |.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 54 55553
No 180
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.10 E-value=0.00047 Score=64.32 Aligned_cols=68 Identities=28% Similarity=0.423 Sum_probs=56.7
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEecc---CCC--CCc--------cceEEEEeCCHHHHHHHHHHhCCC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD---KES--GES--------KGFAFVSFRSKEFAKKAIDELHSK 171 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~---~~~--g~~--------~g~afV~f~~~e~A~~al~~l~~~ 171 (482)
.+++|.+.|||.+-.-+.|.++|..+|.|..|+|+.- +.. +.. +-+|+|+|...+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6789999999999999999999999999999999875 221 212 446999999999999999877643
Q ss_pred C
Q 011574 172 E 172 (482)
Q Consensus 172 ~ 172 (482)
.
T Consensus 310 ~ 310 (484)
T KOG1855|consen 310 Q 310 (484)
T ss_pred h
Confidence 3
No 181
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.03 E-value=0.00095 Score=61.52 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=64.9
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-----CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-----RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-----kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
..|.|.||.+.+|.+++..+|...|.|..+.|+...... .-.|||.|.+...+..|.. |.++.|-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 479999999999999999999999999999988754321 5689999999999998887 7888888888888776
Q ss_pred cCC
Q 011574 358 KPQ 360 (482)
Q Consensus 358 ~~~ 360 (482)
...
T Consensus 87 ~~~ 89 (479)
T KOG4676|consen 87 GDE 89 (479)
T ss_pred CCC
Confidence 433
No 182
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0036 Score=60.20 Aligned_cols=64 Identities=31% Similarity=0.440 Sum_probs=59.1
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhc-cCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHH
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCE-PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~-~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~ 167 (482)
...+||||++||.-+|.++|..+|. -||.|..+-|-.|++-+..+|.+-|+|.+..+-.+||++
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3568999999999999999999998 799999999999977789999999999999999999965
No 183
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.92 E-value=0.0034 Score=50.55 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=53.3
Q ss_pred CCCCCCCEEEECCCCC-----CCCHH----HHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q 011574 101 ALPPNGSEVFIGGLPK-----DASEE----DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171 (482)
Q Consensus 101 ~~~~~~~~v~v~nLp~-----~~t~~----~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~ 171 (482)
..-+...||.|.=+.+ ..-.+ +|.+.|..||.|.-|+++.+ .-+|+|.+-+.|.+|+ .+++.
T Consensus 22 ~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~ 92 (146)
T PF08952_consen 22 SQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGI 92 (146)
T ss_dssp ----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCS
T ss_pred hcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCc
Confidence 3444556777776651 12222 67788899999998888765 4899999999999999 78999
Q ss_pred CcCCeEEEEeecCC
Q 011574 172 ELKGKTIRCSLSET 185 (482)
Q Consensus 172 ~~~g~~l~v~~~~~ 185 (482)
.+.|+.|+|+.-.+
T Consensus 93 ~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 93 QVNGRTLKIRLKTP 106 (146)
T ss_dssp EETTEEEEEEE---
T ss_pred EECCEEEEEEeCCc
Confidence 99999999987654
No 184
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.011 Score=57.67 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=60.3
Q ss_pred CCCCCEEEECCCCCC-CCHHHHHHhhccC----CCeeEEEEeccCC----------CCC---------------------
Q 011574 103 PPNGSEVFIGGLPKD-ASEEDLRDLCEPI----GDVFEVRLMKDKE----------SGE--------------------- 146 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~-~t~~~l~~~f~~~----G~v~~v~~~~~~~----------~g~--------------------- 146 (482)
....++|-|-||.|+ +...+|.-+|+.| |.|.+|.|+...- .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345678999999996 7888999999877 5899999876211 121
Q ss_pred ----------------ccceEEEEeCCHHHHHHHHHHhCCCCcCC--eEEEEee
Q 011574 147 ----------------SKGFAFVSFRSKEFAKKAIDELHSKELKG--KTIRCSL 182 (482)
Q Consensus 147 ----------------~~g~afV~f~~~e~A~~al~~l~~~~~~g--~~l~v~~ 182 (482)
..-||.|+|.+.+.|.+..+.++|..|.. ..|-+++
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 11369999999999999999999998854 4444433
No 185
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.62 E-value=0.00099 Score=58.19 Aligned_cols=63 Identities=29% Similarity=0.437 Sum_probs=51.5
Q ss_pred HHHHHhhc-cCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 121 EDLRDLCE-PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 121 ~~l~~~f~-~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
++|...|. +||+|.+++|..+.. -...|-+||.|...++|++|++.||+..+.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444444 899999998776543 4567889999999999999999999999999999887664
No 186
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.51 E-value=0.016 Score=41.47 Aligned_cols=57 Identities=25% Similarity=0.514 Sum_probs=41.8
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~ 170 (482)
.....+|. .|..+...||.++|+.||.|. |..+.+- .|||...+.+.|..++..+..
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 34555565 999999999999999999864 4444442 699999999999999987763
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.33 E-value=0.022 Score=38.68 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=44.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcc---cceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHc
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRH---GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l 342 (482)
..|+|+++. .++.++|+.+|..| .....|..+.+. -|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHHcC
Confidence 689999996 57888899999998 134577777775 5899999999999999864
No 188
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.18 E-value=0.014 Score=51.91 Aligned_cols=64 Identities=25% Similarity=0.380 Sum_probs=51.2
Q ss_pred HHHHHHhhccCCCeeEEEEeccCCCCCc-cceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 120 EEDLRDLCEPIGDVFEVRLMKDKESGES-KGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 120 ~~~l~~~f~~~G~v~~v~~~~~~~~g~~-~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
++++++-+.+||.|..|.|+..+.--.. .--.||+|...++|.+|+-.|||..|.||.++..+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 4568889999999999998876431111 113799999999999999999999999999876654
No 189
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.10 E-value=0.027 Score=38.22 Aligned_cols=54 Identities=24% Similarity=0.409 Sum_probs=43.9
Q ss_pred CEEEECCCCCCCCHHHHHHhhccC---CCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHh
Q 011574 107 SEVFIGGLPKDASEEDLRDLCEPI---GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~~~f~~~---G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l 168 (482)
..|+|++| .+++.++|+.+|..| .....|..+-|. .|=|.|.+.+.|.+||..|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 35999999 558889999999998 134677777765 4999999999999999754
No 190
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.07 E-value=0.0041 Score=53.04 Aligned_cols=71 Identities=21% Similarity=0.330 Sum_probs=45.8
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhcc-CCCe---eEEEEeccCCC-C-CccceEEEEeCCHHHHHHHHHHhCCCCcCC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEP-IGDV---FEVRLMKDKES-G-ESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~-~G~v---~~v~~~~~~~~-g-~~~g~afV~f~~~e~A~~al~~l~~~~~~g 175 (482)
..+.|.||+||+.+|++++.+.++. ++.. ..+.-.....+ . ....-|||.|.+.+++...+..+++..|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 4568999999999999999998877 6655 23331121111 1 112349999999999999999999987743
No 191
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=95.92 E-value=0.054 Score=54.98 Aligned_cols=15 Identities=0% Similarity=0.102 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHhCC
Q 011574 156 RSKEFAKKAIDELHS 170 (482)
Q Consensus 156 ~~~e~A~~al~~l~~ 170 (482)
.+...+.+||+++-+
T Consensus 207 k~~~eiIrClka~mN 221 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMN 221 (1102)
T ss_pred HHHHHHHHHHHHHhc
Confidence 344556666655433
No 192
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.89 E-value=0.043 Score=39.38 Aligned_cols=55 Identities=18% Similarity=0.296 Sum_probs=40.2
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCC
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~ 344 (482)
...+|. +|..+-..||.++|+.||.|.---| .+ .-|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~d-----TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-ND-----TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CT-----TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cC-----CcEEEEeecHHHHHHHHHHhcc
Confidence 345555 9999999999999999998853333 33 4699999999999999987763
No 193
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.79 E-value=0.05 Score=43.22 Aligned_cols=74 Identities=23% Similarity=0.301 Sum_probs=56.5
Q ss_pred CCCCCEEEECCCCCCCC----HHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEE
Q 011574 103 PPNGSEVFIGGLPKDAS----EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t----~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l 178 (482)
.+.-.||.|+=|..++. ...+...++.||+|.+|.++- +-.|.|.|.+..+|-+|+.+++. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 44567888887766653 334556778999999999863 23699999999999999988665 6678888
Q ss_pred EEeecC
Q 011574 179 RCSLSE 184 (482)
Q Consensus 179 ~v~~~~ 184 (482)
.+.|..
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 887754
No 194
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.70 E-value=0.0057 Score=58.10 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=62.9
Q ss_pred CCCEEEECCCCCCC-CHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 105 NGSEVFIGGLPKDA-SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 105 ~~~~v~v~nLp~~~-t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
+.+.|-+.-+|+.+ |-++|..+|.+||.|..|.+-.. .-.|.|+|.+..+|-.|. +.++..|++|.|+|.|.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 55667777777765 56789999999999999988544 226999999999998888 66999999999999998
Q ss_pred CCcc
Q 011574 184 ETKN 187 (482)
Q Consensus 184 ~~~~ 187 (482)
++..
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 8754
No 195
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=95.63 E-value=0.01 Score=61.64 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=24.2
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCCcC
Q 011574 146 ESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (482)
Q Consensus 146 ~~~g~afV~f~~~e~A~~al~~l~~~~~~ 174 (482)
.-+||-||+=.....+..||+.+-+....
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec
Confidence 34899999999999999999887766555
No 196
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.59 E-value=0.083 Score=42.01 Aligned_cols=72 Identities=17% Similarity=0.282 Sum_probs=54.9
Q ss_pred CcceEEEecCCCCCCH-H---HHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEE
Q 011574 281 QVKALYVKNIPDNTST-E---KIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~-~---~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~ 356 (482)
...+|.|+-|...+.. + .|...++.||.|.+|.+.- +..|.|.|.+..+|-+|+.++.. ..-|..+.++|
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-----rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-----RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-----CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 3468888777655432 3 4555678899999998753 35799999999999999998776 66788888888
Q ss_pred cc
Q 011574 357 AK 358 (482)
Q Consensus 357 a~ 358 (482)
-.
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 64
No 197
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.58 E-value=0.0082 Score=57.09 Aligned_cols=74 Identities=12% Similarity=0.262 Sum_probs=61.4
Q ss_pred ceEEEecCCCCC-CHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCC
Q 011574 283 KALYVKNIPDNT-STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (482)
Q Consensus 283 ~~l~v~nlp~~~-t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 361 (482)
+.|-+.-+|+.+ +..+|...|.+||.|..|.|.... -.|.|+|.+..+|-.|.. .++..|+++.|+|.|.++..
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~----~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS----LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCch----hhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 456666666655 568899999999999999886653 459999999999988776 78999999999999998743
No 198
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.56 E-value=0.034 Score=47.42 Aligned_cols=78 Identities=10% Similarity=0.029 Sum_probs=51.2
Q ss_pred cceEEEecCCCCCCHHHHHHHHhc-ccce---eEEE--cCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCC----
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQR-HGEV---TKVV--MPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDG---- 349 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~-~G~v---~~v~--i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g---- 349 (482)
..+|.|++||+.+|++++.+.++. ++.. ..+. +....... -.-|||.|.+.+++...+..++|+.|-+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 368999999999999999987776 5544 2332 22111111 3459999999999999999999988754
Q ss_pred -cEEEEEEccC
Q 011574 350 -QVLEVVLAKP 359 (482)
Q Consensus 350 -~~l~v~~a~~ 359 (482)
.+..|.+|.-
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 3566777754
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.53 E-value=0.13 Score=39.92 Aligned_cols=67 Identities=9% Similarity=0.072 Sum_probs=52.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccc-ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCC
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g 349 (482)
..+.+-..|..++-++|..+.+.+- .|..++|+++....+-.+.++|.+.++|..-...+||+.|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4455555666677777877766654 677888988876557789999999999999999999998865
No 200
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.48 E-value=0.019 Score=55.66 Aligned_cols=70 Identities=19% Similarity=0.320 Sum_probs=58.2
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhcc--CCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCC--CcCCeEEEE
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEP--IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK--ELKGKTIRC 180 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~--~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~--~~~g~~l~v 180 (482)
..|.|+|+-||..+..++|+.||+. |-++++|.+-.+.. =||+|.+..+|+.|.+.|... .|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4578899999999999999999965 67889999866543 699999999999999887653 478887754
Q ss_pred e
Q 011574 181 S 181 (482)
Q Consensus 181 ~ 181 (482)
+
T Consensus 247 R 247 (684)
T KOG2591|consen 247 R 247 (684)
T ss_pred h
Confidence 4
No 201
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=95.44 E-value=0.13 Score=52.50 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=5.1
Q ss_pred CHHHHHHhhccC
Q 011574 119 SEEDLRDLCEPI 130 (482)
Q Consensus 119 t~~~l~~~f~~~ 130 (482)
+..++-.+|...
T Consensus 84 s~~e~~~~F~~~ 95 (1102)
T KOG1924|consen 84 SSNEVLELFELM 95 (1102)
T ss_pred cHHHHHHHHHHH
Confidence 334444444443
No 202
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.25 E-value=0.059 Score=46.13 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=46.6
Q ss_pred CHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcC--CceeCCcEEEEEEccCC
Q 011574 295 STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 295 t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~--~~~~~g~~l~v~~a~~~ 360 (482)
..+.|+.+|..|+.+..+.+.+.- +-..|.|.+.+.|.+|...|+ +..|.|..|+|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 357899999999988887766655 458999999999999999999 99999999999998543
No 203
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=95.10 E-value=0.36 Score=50.40 Aligned_cols=60 Identities=10% Similarity=0.186 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHhccccee-----EEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 292 DNTSTEKIKELFQRHGEVT-----KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 292 ~~~t~~~l~~~F~~~G~v~-----~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
..++..+|..++..-+.|. .|.|.. .|.||+. ....|...+..|++..+.|+.|.|..+.
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~------~~s~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFA------SHSTIEL-PKGMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeC------CceEEEc-ChhhHHHHHHHhccccccCCceEEEECC
Confidence 4677777877776655444 455543 5789998 4677888999999999999999999885
No 204
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.71 E-value=0.25 Score=38.34 Aligned_cols=68 Identities=19% Similarity=0.337 Sum_probs=48.8
Q ss_pred CCEEEECCCCCC-CCHHHHHHhhccCC-CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCC
Q 011574 106 GSEVFIGGLPKD-ASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (482)
Q Consensus 106 ~~~v~v~nLp~~-~t~~~l~~~f~~~G-~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g 175 (482)
.++|.|=-+|+. ++.++|..+...+- .|..++|+++.. .++-.+.+.|.+.+.|......+||+.++-
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344555555554 55556665555554 677888888753 356679999999999999999999988753
No 205
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.67 E-value=0.077 Score=50.45 Aligned_cols=74 Identities=18% Similarity=0.366 Sum_probs=61.9
Q ss_pred cCCCCCCCEEEECCCCCCCCHHHHHHhhccCC-CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCC
Q 011574 100 LALPPNGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (482)
Q Consensus 100 ~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g 175 (482)
.+.+..++.|+|-.+|..+|-.||..|+..+- .|..|+++++.. .++-.++|.|.+.++|......+||..|..
T Consensus 68 ~~~~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 68 LKNASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred cccCCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 33444588999999999999999999997654 789999999653 345579999999999999999999998864
No 206
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=94.35 E-value=0.027 Score=60.45 Aligned_cols=7 Identities=14% Similarity=0.278 Sum_probs=2.9
Q ss_pred HHHhhcc
Q 011574 123 LRDLCEP 129 (482)
Q Consensus 123 l~~~f~~ 129 (482)
|.++|+.
T Consensus 741 La~~Fk~ 747 (784)
T PF04931_consen 741 LAAIFKE 747 (784)
T ss_pred HHHHHHH
Confidence 3344443
No 207
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.22 E-value=0.35 Score=43.64 Aligned_cols=74 Identities=30% Similarity=0.438 Sum_probs=56.0
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCc-EEEEEEccCCC
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ-VLEVVLAKPQT 361 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~-~l~v~~a~~~~ 361 (482)
.=|.|-++|... -..|..+|++||.|.+.....+ + .+-+|.|.+.-+|.+||. -||+.|+|. .|-|..+..+.
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~n--g--NwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSN--G--NWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecCCC--C--ceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCHH
Confidence 446777777654 3457789999999998876632 2 689999999999999999 599999884 45566655554
Q ss_pred C
Q 011574 362 D 362 (482)
Q Consensus 362 ~ 362 (482)
.
T Consensus 272 v 272 (350)
T KOG4285|consen 272 V 272 (350)
T ss_pred H
Confidence 3
No 208
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=94.10 E-value=0.096 Score=56.36 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=10.7
Q ss_pred CCHHHHHHhhccCC
Q 011574 118 ASEEDLRDLCEPIG 131 (482)
Q Consensus 118 ~t~~~l~~~f~~~G 131 (482)
.|-++|..++..+-
T Consensus 426 ~s~eel~~lL~~~~ 439 (840)
T PF04147_consen 426 SSHEELLELLDGYS 439 (840)
T ss_pred CCHHHHHHHHhcCC
Confidence 36788999988774
No 209
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.09 E-value=0.021 Score=52.26 Aligned_cols=78 Identities=24% Similarity=0.428 Sum_probs=61.9
Q ss_pred ceEEEecCCCCCCHHHHH---HHHhcccceeEEEcCCCCC--CC---CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEE
Q 011574 283 KALYVKNIPDNTSTEKIK---ELFQRHGEVTKVVMPPGKS--GK---RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~---~~F~~~G~v~~v~i~~~~~--~~---kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v 354 (482)
+-+||-+|+..+..+.+. ++|.+||.|..|.+..+.. .. ..-++|+|...++|..||...+|..+.|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888888776555543 5889999999999888662 11 334899999999999999999999999999888
Q ss_pred EEccCC
Q 011574 355 VLAKPQ 360 (482)
Q Consensus 355 ~~a~~~ 360 (482)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 777644
No 210
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.75 E-value=0.031 Score=51.26 Aligned_cols=80 Identities=24% Similarity=0.414 Sum_probs=60.8
Q ss_pred CEEEECCCCCCCCHHHHH---HhhccCCCeeEEEEeccCC--CC-CccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEE
Q 011574 107 SEVFIGGLPKDASEEDLR---DLCEPIGDVFEVRLMKDKE--SG-ESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~---~~f~~~G~v~~v~~~~~~~--~g-~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v 180 (482)
.-+||-+|+..+..+.+. +.|.+||.|..|.+..+.. .+ ...-.+||+|...++|..||...++..+.|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 347788888877655544 5899999999999888652 11 11224999999999999999999999999999776
Q ss_pred eecCCc
Q 011574 181 SLSETK 186 (482)
Q Consensus 181 ~~~~~~ 186 (482)
.....+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 665443
No 211
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.29 E-value=0.21 Score=47.63 Aligned_cols=68 Identities=7% Similarity=0.167 Sum_probs=60.5
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccc-ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCC
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g 349 (482)
.+.|+|-.+|..+|-.||..|+..|- .|..|+|+++....+-.+.|+|.+.++|......+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 57899999999999999999998764 678999999776667789999999999999999999998876
No 212
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.15 E-value=0.58 Score=33.45 Aligned_cols=59 Identities=22% Similarity=0.428 Sum_probs=36.0
Q ss_pred CCCCHHHHHHhhccCC-----CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 116 KDASEEDLRDLCEPIG-----DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 116 ~~~t~~~l~~~f~~~G-----~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
..++..+|..++...+ .|-.|.+..+ |+||+.... .|..++..|++..+.|++|+|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4578888888886664 4667777544 799988765 688889999999999999999864
No 213
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.12 E-value=0.41 Score=46.93 Aligned_cols=100 Identities=8% Similarity=0.154 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhCCCCcCCeEEEEeecCCcceeeeCCCCCCCCHHHHHHHHhhhC-CcccEEEEeeCCCCCCCCcceEEEE
Q 011574 158 KEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVL 236 (482)
Q Consensus 158 ~e~A~~al~~l~~~~~~g~~l~v~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G-~~i~~~~~~~d~~~~~~~~g~afv~ 236 (482)
.+-...+|....+..+..+-++|......+-++++-||...-.+.++.||..-- +.+..|.+-.+ .-.||.
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--------~nWyIT 218 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--------DNWYIT 218 (684)
T ss_pred hHHHHHHHhcCCCceeccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--------CceEEE
Confidence 444555666667777888889999888888888999999999999999998521 22555555433 246999
Q ss_pred eCCHHHHHHHHHHHhccccccCCCCCeee
Q 011574 237 YYNNACADYSRQKMLNANFKLDGNTPTIS 265 (482)
Q Consensus 237 f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (482)
|.+..+|..|.+.|......+.++.|...
T Consensus 219 fesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 219 FESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 99999999999999887767777766543
No 214
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.90 E-value=0.41 Score=34.22 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHhccc-----ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 292 DNTSTEKIKELFQRHG-----EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 292 ~~~t~~~l~~~F~~~G-----~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
..++..+|..++...+ .|-.|.|.. .|+||+-. .+.|..++..|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~------~~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD------NFSFVEVP-EEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S------S-EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee------eEEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3567788888887654 455777755 47999984 56889999999999999999999875
No 215
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.69 E-value=0.26 Score=42.21 Aligned_cols=60 Identities=23% Similarity=0.300 Sum_probs=46.0
Q ss_pred CHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhC--CCCcCCeEEEEeecC
Q 011574 119 SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTIRCSLSE 184 (482)
Q Consensus 119 t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~--~~~~~g~~l~v~~~~ 184 (482)
....|+++|..|+.+..+.+++... =..|.|.+.+.|.+|...|+ +..+.|..|+|.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR------RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT------EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC------EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 3578999999999998888876543 59999999999999999999 889999999998774
No 216
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.68 E-value=0.081 Score=52.86 Aligned_cols=71 Identities=24% Similarity=0.293 Sum_probs=62.5
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
....++||+|+...+..+-++.+...||.|..+... -|+|..|..+..+.+|+..++...+++..+.+..-
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~-------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD-------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh-------hhcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 455799999999999999999999999999887554 38999999999999999999999999988877663
No 217
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=92.59 E-value=4.3 Score=36.91 Aligned_cols=158 Identities=15% Similarity=0.222 Sum_probs=97.7
Q ss_pred ceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCC------CCCCCcceEEEEeCCHHHHHH----HHHHHhccccc
Q 011574 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ------NPSRNRGFSFVLYYNNACADY----SRQKMLNANFK 256 (482)
Q Consensus 187 ~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~------~~~~~~g~afv~f~~~~~a~~----a~~~~~~~~~~ 256 (482)
+.|.+.|+...++-..+...|-+||+ |+.|-++.+.. ..-+...-..+.|-+...|.. .++.+..-...
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~p-IESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGP-IESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCc-eeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 56788899999999999999999998 99999998741 112334567788888887753 34445444445
Q ss_pred cCCCCCeeeecCCCCCC---------C-----------ccccccCcceEEEecCCCCCCHHHHHHHH---hccc----ce
Q 011574 257 LDGNTPTISWADPKSTP---------D-----------HSAAASQVKALYVKNIPDNTSTEKIKELF---QRHG----EV 309 (482)
Q Consensus 257 ~~~~~~~v~~~~~~~~~---------~-----------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F---~~~G----~v 309 (482)
+....+.+.+..-.-.. . ........+.|.|.=-....+++-|.+.+ ..-+ .|
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n~RYVl 174 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNNKRYVL 174 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCCceEEE
Confidence 66666666654311000 0 01111224556665333222333333322 2212 56
Q ss_pred eEEEcCCCCCCC----CcEEEEEeCCHHHHHHHHHHcCCc
Q 011574 310 TKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTEKY 345 (482)
Q Consensus 310 ~~v~i~~~~~~~----kg~afV~f~~~e~A~~A~~~l~~~ 345 (482)
++|.|+...... +.||.++|-+...|...+..+.-.
T Consensus 175 EsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 175 ESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred EEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 788777554321 789999999999999999877643
No 218
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.44 E-value=0.26 Score=46.15 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=45.8
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCC-eeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHH
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~-v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~ 167 (482)
-.+.|-|.++|.....+||..+|..|+. =..|+++-+. .||..|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 4578999999999999999999999973 3455555543 599999999999999943
No 219
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.13 E-value=0.59 Score=42.23 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=55.0
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeE-EEEeecC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT-IRCSLSE 184 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~-l~v~~~~ 184 (482)
.+-|-|-+.|+...- -|..+|.+||.|+......+ --+-+|.|.+.-+|.+||. .|+.+|.|.. |-|..|.
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 467888888876543 56779999999987766432 3389999999999999995 5999998765 4466655
Q ss_pred Cc
Q 011574 185 TK 186 (482)
Q Consensus 185 ~~ 186 (482)
++
T Consensus 269 Dk 270 (350)
T KOG4285|consen 269 DK 270 (350)
T ss_pred CH
Confidence 43
No 220
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.12 E-value=0.099 Score=53.65 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=62.1
Q ss_pred EEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCce--eCCcEEEEEEccCCC
Q 011574 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE--IDGQVLEVVLAKPQT 361 (482)
Q Consensus 285 l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~--~~g~~l~v~~a~~~~ 361 (482)
..+.|.+-..+-..|..+|++||.|.+++..++- ..|.|.|.+.+.|..|+.+|+|+. +.|-+.+|.+|+.-.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 4555666677778899999999999999988877 579999999999999999999986 468899999997553
No 221
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.09 E-value=7.2 Score=37.85 Aligned_cols=13 Identities=8% Similarity=0.174 Sum_probs=9.2
Q ss_pred eEEEEeCCHHHHH
Q 011574 232 FSFVLYYNNACAD 244 (482)
Q Consensus 232 ~afv~f~~~~~a~ 244 (482)
|-.|.|.+.+.+.
T Consensus 261 ~YvvRFnS~~e~~ 273 (483)
T KOG2236|consen 261 YYVVRFNSEEEIS 273 (483)
T ss_pred eEEEecCchhhhh
Confidence 6677887776664
No 222
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.87 E-value=0.047 Score=54.71 Aligned_cols=11 Identities=0% Similarity=0.102 Sum_probs=2.0
Q ss_pred EEEEEEccCCC
Q 011574 351 VLEVVLAKPQT 361 (482)
Q Consensus 351 ~l~v~~a~~~~ 361 (482)
+|.++|.....
T Consensus 456 ~itlSWk~~~~ 466 (556)
T PF05918_consen 456 NITLSWKEAKK 466 (556)
T ss_dssp ----TTS----
T ss_pred ccceeeeeccc
Confidence 46666665544
No 223
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.75 E-value=0.18 Score=37.17 Aligned_cols=57 Identities=19% Similarity=0.452 Sum_probs=41.6
Q ss_pred EEEEeCCHHHHHHHHHHhCCCC--cCCeEEEEe---------------ecCCcceeeeCCCCCCCCHHHHHHHHh
Q 011574 151 AFVSFRSKEFAKKAIDELHSKE--LKGKTIRCS---------------LSETKNRLFIGNVPKNWTEDEFRKVIE 208 (482)
Q Consensus 151 afV~f~~~e~A~~al~~l~~~~--~~g~~l~v~---------------~~~~~~~l~v~nLp~~~t~~~l~~~f~ 208 (482)
|+|+|..+.-|++.++. ..+. +.+..+.|. ....+++|.|.+||..+.++.|++.++
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999854 3332 344444443 233568999999999999999987543
No 224
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.73 E-value=0.15 Score=52.47 Aligned_cols=70 Identities=30% Similarity=0.416 Sum_probs=59.2
Q ss_pred EEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCc--CCeEEEEeecC
Q 011574 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL--KGKTIRCSLSE 184 (482)
Q Consensus 109 v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~--~g~~l~v~~~~ 184 (482)
..+.|.+-..+-..|..+|.+||.|.+++..++.+ .|.|.|.+.+.|..|+.+|+|..+ .|-+.+|.+++
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 34445555677788999999999999999988865 799999999999999999999875 57888888776
No 225
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=89.99 E-value=0.23 Score=47.10 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=4.7
Q ss_pred CCHHHHHH
Q 011574 118 ASEEDLRD 125 (482)
Q Consensus 118 ~t~~~l~~ 125 (482)
+|.+|+..
T Consensus 190 LT~eDF~k 197 (324)
T PF05285_consen 190 LTPEDFAK 197 (324)
T ss_pred CCHHHHHH
Confidence 46666554
No 226
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=89.68 E-value=0.16 Score=53.19 Aligned_cols=17 Identities=12% Similarity=0.348 Sum_probs=12.4
Q ss_pred cCCCCCCHHHHHHHHhc
Q 011574 289 NIPDNTSTEKIKELFQR 305 (482)
Q Consensus 289 nlp~~~t~~~l~~~F~~ 305 (482)
+.|..+....|+++|+.
T Consensus 446 ~~pl~~~~~eLrKyF~~ 462 (1024)
T KOG1999|consen 446 KGPLEVPASELRKYFEP 462 (1024)
T ss_pred CCccccchHhhhhhccC
Confidence 34567777888888863
No 227
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.00 E-value=0.12 Score=51.92 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=4.7
Q ss_pred CCCCHHHHHHhh
Q 011574 116 KDASEEDLRDLC 127 (482)
Q Consensus 116 ~~~t~~~l~~~f 127 (482)
.++|.+++.-+|
T Consensus 188 ~DVTaeEF~l~m 199 (556)
T PF05918_consen 188 QDVTAEEFELFM 199 (556)
T ss_dssp TT--HHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 345555554433
No 228
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.91 E-value=2.5 Score=29.33 Aligned_cols=56 Identities=9% Similarity=0.235 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEE
Q 011574 292 DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (482)
Q Consensus 292 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v 354 (482)
..++-++|+..+..|. -.+|. .++. || ||.|.+..+|+++....++..+....|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~-~~~I~--~d~t---Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYR-WDRIR--DDRT---GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCC-cceEE--ecCC---EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3577899999999994 34444 3332 44 99999999999999999998887766543
No 229
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.74 E-value=1.7 Score=43.19 Aligned_cols=78 Identities=17% Similarity=0.294 Sum_probs=60.3
Q ss_pred cCcceEEEecCCCC-CCHHHHHHHHhcc----cceeEEEcCCCCCC----------------------------------
Q 011574 280 SQVKALYVKNIPDN-TSTEKIKELFQRH----GEVTKVVMPPGKSG---------------------------------- 320 (482)
Q Consensus 280 ~~~~~l~v~nlp~~-~t~~~l~~~F~~~----G~v~~v~i~~~~~~---------------------------------- 320 (482)
...++|-|.||.|. +...+|.-+|+.| |.|.+|.|....-|
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 44589999999975 7889999999887 58888888532100
Q ss_pred -------------C--CcEEEEEeCCHHHHHHHHHHcCCceeCC--cEEEEEEc
Q 011574 321 -------------K--RDFGFIHYAERSSALKAVKDTEKYEIDG--QVLEVVLA 357 (482)
Q Consensus 321 -------------~--kg~afV~f~~~e~A~~A~~~l~~~~~~g--~~l~v~~a 357 (482)
+ -=||.|+|.+++.|......++|..|.. ..|-+.|.
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 0 1279999999999999999999999865 55556554
No 230
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.19 E-value=0.32 Score=48.80 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=61.6
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
+...+|||+||...+..+-++..+..+|-|.+++... |+|..|..+..+..|+..++...+.+..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3567899999999999999999999999988777653 899999999999999999998888888887754
No 231
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.58 E-value=2.8 Score=29.03 Aligned_cols=55 Identities=13% Similarity=0.192 Sum_probs=42.6
Q ss_pred CCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEE
Q 011574 117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (482)
Q Consensus 117 ~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v 180 (482)
.++-++|+..|+.|.- .+|..++ .| =||.|.+..+|++|....++..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4678899999999963 2344443 23 589999999999999999998887776654
No 232
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=87.09 E-value=0.8 Score=49.50 Aligned_cols=9 Identities=22% Similarity=0.224 Sum_probs=3.8
Q ss_pred cEEEEEEcc
Q 011574 350 QVLEVVLAK 358 (482)
Q Consensus 350 ~~l~v~~a~ 358 (482)
++|.+.-.+
T Consensus 743 ~PL~l~~~k 751 (840)
T PF04147_consen 743 RPLQLQKHK 751 (840)
T ss_pred CCceeccCC
Confidence 344444333
No 233
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=85.86 E-value=7.8 Score=40.36 Aligned_cols=15 Identities=0% Similarity=-0.013 Sum_probs=6.3
Q ss_pred EEEEeCCHHHHHHHH
Q 011574 233 SFVLYYNNACADYSR 247 (482)
Q Consensus 233 afv~f~~~~~a~~a~ 247 (482)
|.+-|.+..--..|+
T Consensus 634 alLPFiDe~rLl~a~ 648 (931)
T KOG2044|consen 634 ALLPFIDERRLLSAV 648 (931)
T ss_pred ccccccchhhHHHHH
Confidence 334454444333333
No 234
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=84.28 E-value=0.7 Score=43.82 Aligned_cols=7 Identities=0% Similarity=0.074 Sum_probs=2.7
Q ss_pred CCHHHHH
Q 011574 198 WTEDEFR 204 (482)
Q Consensus 198 ~t~~~l~ 204 (482)
++..+|.
T Consensus 231 v~~~dIe 237 (324)
T PF05285_consen 231 VDPSDIE 237 (324)
T ss_pred CCHHHHH
Confidence 3333333
No 235
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=84.09 E-value=1.7 Score=44.82 Aligned_cols=19 Identities=26% Similarity=0.158 Sum_probs=9.3
Q ss_pred EEECCCCCCCCHHHHHHhh
Q 011574 109 VFIGGLPKDASEEDLRDLC 127 (482)
Q Consensus 109 v~v~nLp~~~t~~~l~~~f 127 (482)
..++.+|--++.++...++
T Consensus 958 k~~~d~pvFAsaeey~hll 976 (988)
T KOG2038|consen 958 KGLNDSPVFASAEEYAHLL 976 (988)
T ss_pred hccccchhhhhHHHHHHHh
Confidence 3445566445555444443
No 236
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=80.35 E-value=1.8 Score=44.22 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=16.2
Q ss_pred cEEEEEeCCHHHHHHHHHHcCCceeCCc
Q 011574 323 DFGFIHYAERSSALKAVKDTEKYEIDGQ 350 (482)
Q Consensus 323 g~afV~f~~~e~A~~A~~~l~~~~~~g~ 350 (482)
.--||...+.++-..|+++|-...+.|+
T Consensus 622 r~IFcsImsaeDyiDAFEklLkL~LK~~ 649 (822)
T KOG2141|consen 622 RAIFCSIMSAEDYIDAFEKLLKLSLKGK 649 (822)
T ss_pred hhheeeeecchHHHHHHHHHHhccCCCc
Confidence 3446666666666666666555455443
No 237
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=79.59 E-value=2.3 Score=35.58 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=53.8
Q ss_pred ceEEEecCCCCCCH-----HHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCc-EEEEEE
Q 011574 283 KALYVKNIPDNTST-----EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ-VLEVVL 356 (482)
Q Consensus 283 ~~l~v~nlp~~~t~-----~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~-~l~v~~ 356 (482)
..+.+.+|+..+.. .....+|.+|-......+.+.. ++.-|.|.+++.|..|..+++...|.|+ .+++-+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf----rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF----RRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh----ceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 45777777754322 2345566666555555555444 5677899999999999999999999998 888888
Q ss_pred ccCCC
Q 011574 357 AKPQT 361 (482)
Q Consensus 357 a~~~~ 361 (482)
+.+..
T Consensus 87 aQ~~~ 91 (193)
T KOG4019|consen 87 AQPGH 91 (193)
T ss_pred ccCCC
Confidence 86554
No 238
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=79.29 E-value=1.5 Score=45.75 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHHhc
Q 011574 239 NNACADYSRQKMLN 252 (482)
Q Consensus 239 ~~~~a~~a~~~~~~ 252 (482)
+..++..|+.++..
T Consensus 400 SA~D~v~al~ALLE 413 (622)
T PF02724_consen 400 SASDVVYALTALLE 413 (622)
T ss_pred eHHHHHHHHHHHhc
Confidence 44555566666543
No 239
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=78.36 E-value=0.43 Score=46.79 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=54.3
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEE
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l 178 (482)
..|+|||+|++++++-.+|..+|+.+--+..+.+.....-.+...+.+|.|+---...-|+.+||+..+.-..+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 35789999999999999999999998765555554433223445678999987777777777778776654433
No 240
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=77.91 E-value=1.6 Score=45.56 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=8.4
Q ss_pred eCCHHHHHHHHHHHhc
Q 011574 237 YYNNACADYSRQKMLN 252 (482)
Q Consensus 237 f~~~~~a~~a~~~~~~ 252 (482)
|...-+|..+...+..
T Consensus 395 y~~~lSA~D~v~al~A 410 (622)
T PF02724_consen 395 YRGKLSASDVVYALTA 410 (622)
T ss_pred CCCceeHHHHHHHHHH
Confidence 3455555555555543
No 241
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=77.24 E-value=2.2 Score=43.69 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=4.3
Q ss_pred CCCCCHHHHH
Q 011574 291 PDNTSTEKIK 300 (482)
Q Consensus 291 p~~~t~~~l~ 300 (482)
|-.+|+++|.
T Consensus 553 ~l~vTledll 562 (822)
T KOG2141|consen 553 PLSVTLEDLL 562 (822)
T ss_pred cccccHHHhh
Confidence 3334444443
No 242
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=77.00 E-value=5 Score=35.90 Aligned_cols=36 Identities=22% Similarity=0.514 Sum_probs=28.0
Q ss_pred CcceEEEecCCCC------------CCHHHHHHHHhcccceeEEEcCC
Q 011574 281 QVKALYVKNIPDN------------TSTEKIKELFQRHGEVTKVVMPP 316 (482)
Q Consensus 281 ~~~~l~v~nlp~~------------~t~~~l~~~F~~~G~v~~v~i~~ 316 (482)
...+|++.+||-. -+++.|+..|..||.|..|.|+.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3567888888732 24578999999999999988863
No 243
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=74.69 E-value=3.7 Score=39.68 Aligned_cols=11 Identities=18% Similarity=0.570 Sum_probs=6.1
Q ss_pred CcCCeEEEEee
Q 011574 172 ELKGKTIRCSL 182 (482)
Q Consensus 172 ~~~g~~l~v~~ 182 (482)
.+.||+|.|-.
T Consensus 425 SMrGRpItvAa 435 (620)
T COG4547 425 SMRGRPITVAA 435 (620)
T ss_pred CcCCcceehhH
Confidence 34566666543
No 244
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=74.58 E-value=5.3 Score=27.95 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=47.2
Q ss_pred HHHHHhhccCC-CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCCc
Q 011574 121 EDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (482)
Q Consensus 121 ~~l~~~f~~~G-~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~~ 186 (482)
++|++.|...| .|..|.-+....+......-||++....+...++ +=..|.+..|.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCCC
Confidence 46888888888 7888888777766777778899988776644443 445678889999887654
No 245
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=74.36 E-value=11 Score=27.65 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=42.5
Q ss_pred eEEEecCCCCCCHHHHHHHHhc-cc-ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHc
Q 011574 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (482)
Q Consensus 284 ~l~v~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l 342 (482)
+-|+-.++..++..+|++.++. |+ .|..|....-+.+ ..-|||++..-..|.....++
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~-~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG-EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC-cEEEEEEeCCCCcHHHHHHhh
Confidence 4566667888999999999988 66 6777765544432 235999999888888776543
No 246
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=74.23 E-value=3.4 Score=30.50 Aligned_cols=70 Identities=11% Similarity=0.172 Sum_probs=42.8
Q ss_pred EEEEeCCHHHHHHHHHHHhccccccCCCCCeeeecCCC---CCCCccccccCcceEEEecCCCCCCHHHHHHHH
Q 011574 233 SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---STPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303 (482)
Q Consensus 233 afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F 303 (482)
|.|+|.....|...++.- ...+.+....+.+....-. ...-........++|.|.|||..+.++.|++..
T Consensus 1 AlITF~e~~VA~~i~~~~-~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKK-KHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCC-EEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 578898888888766532 2333444444444322111 111112233456899999999999999998754
No 247
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=73.82 E-value=3.2 Score=34.77 Aligned_cols=75 Identities=16% Similarity=0.248 Sum_probs=54.7
Q ss_pred CCEEEECCCCCCCC-----HHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCe-EEE
Q 011574 106 GSEVFIGGLPKDAS-----EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK-TIR 179 (482)
Q Consensus 106 ~~~v~v~nLp~~~t-----~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~-~l~ 179 (482)
.+++++.+|+..+- ......+|.+|-+..-..+++. .+..-|.|.+++.|..|...++...|.|+ .+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 35577778876542 2345567777766555555543 45788999999999999999999999988 888
Q ss_pred EeecCCc
Q 011574 180 CSLSETK 186 (482)
Q Consensus 180 v~~~~~~ 186 (482)
..++...
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 7777654
No 248
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=73.73 E-value=11 Score=27.03 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=41.7
Q ss_pred eEEEecCCCCCCHHHHHHHHhc-cc-ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 011574 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (482)
Q Consensus 284 ~l~v~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~ 341 (482)
+-|+-.++..++..+|+..+++ |+ .|..|....-+.+ ..-|||++..-..|.....+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~-~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG-EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC-ceEEEEEECCCCcHHHHHHh
Confidence 5677778889999999999988 66 5666655444322 23599999988888776554
No 249
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=70.03 E-value=3.9 Score=33.92 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=60.6
Q ss_pred cceEEEEeCCHHHHHHHHHHHhccccccCCCCCeeeecCCCCCCCccccccCcceEEEecCCCC-CCHHHHHHHHhcccc
Q 011574 230 RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDN-TSTEKIKELFQRHGE 308 (482)
Q Consensus 230 ~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~ 308 (482)
.++..+.|.+..++.+++. .....+.+..+.+..-.+..............=|.|.|||.. .+++-|+.+.+.+|.
T Consensus 55 ~~~fl~~F~~~~d~~~vl~---~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~ 131 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLK---GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGE 131 (153)
T ss_pred CCeEEEEEEeccceeEEEe---cccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCC
Confidence 4688889999888876665 344555666665554443332222222122334777899965 788899999999999
Q ss_pred eeEEEcCCCCCCCCcEEEE
Q 011574 309 VTKVVMPPGKSGKRDFGFI 327 (482)
Q Consensus 309 v~~v~i~~~~~~~kg~afV 327 (482)
+..+...........|+-|
T Consensus 132 ~i~vD~~t~~~~~~~~~Rv 150 (153)
T PF14111_consen 132 PIEVDENTLKRTRLDFARV 150 (153)
T ss_pred eEEEEcCCCCcccccEEEE
Confidence 9999776554333345544
No 250
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=68.70 E-value=7.5 Score=37.71 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=7.3
Q ss_pred CEEEECCCCCCCCHHHH
Q 011574 107 SEVFIGGLPKDASEEDL 123 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l 123 (482)
-+||-+.....+..++|
T Consensus 317 Ykvftr~fDe~v~aeel 333 (620)
T COG4547 317 YKVFTREFDEIVLAEEL 333 (620)
T ss_pred ccccchhhhhhhhHHHh
Confidence 34554444444433333
No 251
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=68.35 E-value=1.7 Score=38.72 Aligned_cols=68 Identities=28% Similarity=0.472 Sum_probs=44.3
Q ss_pred CCEEEECCCCCC------------CCHHHHHHhhccCCCeeEEEEecc-----CCCCCccc-----e---------EEEE
Q 011574 106 GSEVFIGGLPKD------------ASEEDLRDLCEPIGDVFEVRLMKD-----KESGESKG-----F---------AFVS 154 (482)
Q Consensus 106 ~~~v~v~nLp~~------------~t~~~l~~~f~~~G~v~~v~~~~~-----~~~g~~~g-----~---------afV~ 154 (482)
.-||++-+||-. -+++-|+..|..||.|..|.|... ..+|+..| | |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 457889888853 256789999999999998877542 22344433 3 4456
Q ss_pred eCCHHHHHHHHHHhCCCCc
Q 011574 155 FRSKEFAKKAIDELHSKEL 173 (482)
Q Consensus 155 f~~~e~A~~al~~l~~~~~ 173 (482)
|..-..-..|+..|.+..|
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 6555555566666666544
No 252
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=68.26 E-value=2.6 Score=33.08 Aligned_cols=50 Identities=20% Similarity=0.307 Sum_probs=27.7
Q ss_pred ceEEEecCCCC---------CCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHH
Q 011574 283 KALYVKNIPDN---------TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERS 333 (482)
Q Consensus 283 ~~l~v~nlp~~---------~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e 333 (482)
-++.|.|++.. ++.+.|++.|+.|..++ |+...+..+..++++|+|..--
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCCh
Confidence 46777787643 35578999999998765 5555555555899999998543
No 253
>KOG2567 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.72 E-value=11 Score=30.92 Aligned_cols=7 Identities=43% Similarity=1.104 Sum_probs=3.0
Q ss_pred CCCCCCC
Q 011574 403 AAGFQQP 409 (482)
Q Consensus 403 ~~g~~~~ 409 (482)
..|||.|
T Consensus 121 ~~GyQ~P 127 (179)
T KOG2567|consen 121 SPGYQPP 127 (179)
T ss_pred CCCccCC
Confidence 3444443
No 254
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=67.58 E-value=8.1 Score=26.87 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=46.6
Q ss_pred HHHHHhhccCC-CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCCc
Q 011574 121 EDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (482)
Q Consensus 121 ~~l~~~f~~~G-~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~~ 186 (482)
.+|++.|+..| .+..|..+....+......-+|+.....+... -++=+.|.++++.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46888899988 78888888887766677788888877654444 23556678899999876543
No 255
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=67.21 E-value=10 Score=38.58 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=7.4
Q ss_pred CCEEEECCCCCCCC
Q 011574 106 GSEVFIGGLPKDAS 119 (482)
Q Consensus 106 ~~~v~v~nLp~~~t 119 (482)
.-.||-.-....+.
T Consensus 295 ~Y~vfTt~fDe~i~ 308 (600)
T TIGR01651 295 DYKVFTTAFDETVD 308 (600)
T ss_pred cceecchhhhhhcc
Confidence 45566665554443
No 256
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=66.57 E-value=6.7 Score=42.93 Aligned_cols=11 Identities=18% Similarity=0.486 Sum_probs=5.1
Q ss_pred HHHHHHhcccc
Q 011574 298 KIKELFQRHGE 308 (482)
Q Consensus 298 ~l~~~F~~~G~ 308 (482)
+|..+|.-||.
T Consensus 1541 Ev~~VF~vYGI 1551 (1640)
T KOG0262|consen 1541 EVNNVFKVYGI 1551 (1640)
T ss_pred HHHHhhhheee
Confidence 34444555543
No 257
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=66.51 E-value=9 Score=38.10 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHcCCceeCCcEEE
Q 011574 331 ERSSALKAVKDTEKYEIDGQVLE 353 (482)
Q Consensus 331 ~~e~A~~A~~~l~~~~~~g~~l~ 353 (482)
+.+++.+|-+.+....|.|+.|+
T Consensus 408 SWeAkkk~Ke~~~~a~FqGKKI~ 430 (432)
T PF09073_consen 408 SWEAKKKAKEKQKIAKFQGKKIV 430 (432)
T ss_pred cHHHHHHHHHHhccCCCCCCccc
Confidence 45555555555544455555553
No 258
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=64.03 E-value=8.7 Score=32.17 Aligned_cols=57 Identities=25% Similarity=0.289 Sum_probs=40.3
Q ss_pred CEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCC-CCccceEEEEeCCHHHHHHHHHH
Q 011574 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES-GESKGFAFVSFRSKEFAKKAIDE 167 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~-g~~~g~afV~f~~~e~A~~al~~ 167 (482)
++++.. |.+...++|..+-+ |.+..|.+.+.... ...+|..||+|.+.+.|..+++.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 456666 44444555555555 78888887665441 25789999999999999998855
No 259
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=63.82 E-value=14 Score=35.24 Aligned_cols=57 Identities=26% Similarity=0.347 Sum_probs=46.2
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCCcceeeeCCCCCCCCHHHHHHHHhh
Q 011574 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209 (482)
Q Consensus 151 afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~~~~l~v~nLp~~~t~~~l~~~f~~ 209 (482)
|||+|.+..+|..|++.+.... .+.+.|..+.+.+.++=.||.....+..++.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccccccCCChHHHHHHHHHHH
Confidence 7999999999999998655443 46668999998899999999888888888766553
No 260
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=63.82 E-value=19 Score=26.35 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=42.1
Q ss_pred EEEECCCCCCCCHHHHHHhhcc-CC-CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHH
Q 011574 108 EVFIGGLPKDASEEDLRDLCEP-IG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167 (482)
Q Consensus 108 ~v~v~nLp~~~t~~~l~~~f~~-~G-~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~ 167 (482)
..|+--++..++..+|+..++. |+ .|.+|..+.-+. + .--|||.+.....|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~--~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-G--EKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--cEEEEEEeCCCCcHHHHHHh
Confidence 3566677889999999999977 56 777777765542 2 22499999998888876544
No 261
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=63.68 E-value=7.5 Score=36.85 Aligned_cols=68 Identities=21% Similarity=0.245 Sum_probs=48.2
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCC-CeeEEEEeccCCC--CCccceEEEEeCCHHHHHHHHHHhCCCCc
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~~--g~~~g~afV~f~~~e~A~~al~~l~~~~~ 173 (482)
-+.|.|++||+.+|+.+|.+....|- .|....+.....+ ....+.|||.|..+++.......+++++|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 35699999999999999998887765 3333344321110 11256799999999998888877777665
No 262
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=63.12 E-value=32 Score=26.54 Aligned_cols=108 Identities=21% Similarity=0.298 Sum_probs=61.3
Q ss_pred CCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCC--cCCeEEEEeecCCccee
Q 011574 112 GGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTIRCSLSETKNRL 189 (482)
Q Consensus 112 ~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~--~~g~~l~v~~~~~~~~l 189 (482)
--||+-+. .|.++|..-|+|.+|..+..-. -..|+-.++|.. +.|. |+|-.......+
T Consensus 9 qVlPPYTn--KLSDYfeSPGKI~svItvtqyp-----------------dndal~~~~G~lE~vDg~-i~IGs~q~~~sV 68 (145)
T TIGR02542 9 QVLPPYTN--KLSDYFESPGKIQSVITVTQYP-----------------DNDALLYVHGTLEQVDGN-IRIGSGQTPASV 68 (145)
T ss_pred EecCCccc--hhhHHhcCCCceEEEEEEeccC-----------------CchhhheeeeehhhccCc-EEEccCCCcccE
Confidence 34777665 5889999999999987754321 112333444432 3343 555554444455
Q ss_pred eeCC---------CCCCCCHHHHHHHHhhhCC--cccEEEEeeCCCCCCCCcceEEEEeCCH
Q 011574 190 FIGN---------VPKNWTEDEFRKVIEDVGP--GVETIELIKDPQNPSRNRGFSFVLYYNN 240 (482)
Q Consensus 190 ~v~n---------Lp~~~t~~~l~~~f~~~G~--~i~~~~~~~d~~~~~~~~g~afv~f~~~ 240 (482)
+|.+ -|..+|..+++++|+.--. .|..-.+.+|- ....+-..||..|...
T Consensus 69 ~i~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdG-LP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 69 RIQGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDG-LPEGSYRICFRLFNAT 129 (145)
T ss_pred EEecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcC-CCCCceEEEEEEeccc
Confidence 5433 3557899999999986311 13333344442 2233445677776544
No 263
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=62.30 E-value=14 Score=33.66 Aligned_cols=78 Identities=12% Similarity=0.244 Sum_probs=61.6
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCC--------CCC-CcEEEEEeCCHHHHHHHH----HHcC--Cce
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK--------SGK-RDFGFIHYAERSSALKAV----KDTE--KYE 346 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--------~~~-kg~afV~f~~~e~A~~A~----~~l~--~~~ 346 (482)
.+.|.+.||...++-..+...|.+||.|++|.++.+. ..+ .....+.|-+.+.+..-. ++|+ ...
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999999999999999999998776 222 567889999988876543 3344 346
Q ss_pred eCCcEEEEEEccC
Q 011574 347 IDGQVLEVVLAKP 359 (482)
Q Consensus 347 ~~g~~l~v~~a~~ 359 (482)
+....|.|+|..-
T Consensus 95 L~S~~L~lsFV~l 107 (309)
T PF10567_consen 95 LKSESLTLSFVSL 107 (309)
T ss_pred cCCcceeEEEEEE
Confidence 7788899888864
No 264
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=61.10 E-value=17 Score=24.71 Aligned_cols=20 Identities=25% Similarity=0.660 Sum_probs=16.6
Q ss_pred HHHHHHHhcccceeEEEcCC
Q 011574 297 EKIKELFQRHGEVTKVVMPP 316 (482)
Q Consensus 297 ~~l~~~F~~~G~v~~v~i~~ 316 (482)
.+||++|+..|.|.-+.|..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 67999999999998776643
No 265
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.80 E-value=51 Score=31.56 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=43.7
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccce-eEEEcCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v-~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~ 340 (482)
...|-|.++|.....+||...|+.|+.= -+|..+.+ ..||-.|.+...|..||.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-----thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-----THALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-----ceeEEeecchHHHHHHhh
Confidence 4679999999988888999999998642 24444444 479999999999999997
No 266
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=59.13 E-value=28 Score=25.03 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=41.1
Q ss_pred EEEECCCCCCCCHHHHHHhhcc-CC-CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHH
Q 011574 108 EVFIGGLPKDASEEDLRDLCEP-IG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167 (482)
Q Consensus 108 ~v~v~nLp~~~t~~~l~~~f~~-~G-~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~ 167 (482)
.-|+-.++.+++..+|+..++. |+ .|..|..+.-+. + .--|||.+..-..|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~--~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-G--EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--ceEEEEEECCCCcHHHHHHh
Confidence 3667778899999999998877 55 677776655432 2 22499999988888766533
No 267
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.94 E-value=9.3 Score=37.06 Aligned_cols=6 Identities=33% Similarity=0.540 Sum_probs=2.9
Q ss_pred CcEEEE
Q 011574 349 GQVLEV 354 (482)
Q Consensus 349 g~~l~v 354 (482)
||+|+-
T Consensus 446 gRKLrY 451 (483)
T KOG2773|consen 446 GRKLRY 451 (483)
T ss_pred Cceeee
Confidence 455543
No 268
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=56.59 E-value=55 Score=27.68 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=8.0
Q ss_pred HHHHHHHHhcccceeEE
Q 011574 296 TEKIKELFQRHGEVTKV 312 (482)
Q Consensus 296 ~~~l~~~F~~~G~v~~v 312 (482)
.++|-++=+-||.|.++
T Consensus 88 k~qIGKVDEIfG~i~d~ 104 (215)
T KOG3262|consen 88 KEQIGKVDEIFGPINDV 104 (215)
T ss_pred hhhhcchhhhccccccc
Confidence 34444444445666544
No 269
>PF12782 Innate_immun: Invertebrate innate immunity transcript family
Probab=55.89 E-value=47 Score=28.49 Aligned_cols=6 Identities=33% Similarity=0.263 Sum_probs=2.5
Q ss_pred HHHHHH
Q 011574 335 ALKAVK 340 (482)
Q Consensus 335 A~~A~~ 340 (482)
|..||.
T Consensus 13 aalais 18 (311)
T PF12782_consen 13 AALAIS 18 (311)
T ss_pred HHHHHH
Confidence 334444
No 270
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=55.36 E-value=13 Score=33.48 Aligned_cols=49 Identities=16% Similarity=0.318 Sum_probs=36.2
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCe-eEEEEeccCCCCCccceEEEEeCCHH
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDV-FEVRLMKDKESGESKGFAFVSFRSKE 159 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v-~~v~~~~~~~~g~~~g~afV~f~~~e 159 (482)
..+-|+|.|||.++.-.||+..+.+.+.+ .++.. . | ..|-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw--k---g-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW--K---G-HFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee--e---c-CCcceeEecCCcc
Confidence 34569999999999999999999888743 23333 1 2 3567999997643
No 271
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=53.96 E-value=16 Score=33.44 Aligned_cols=33 Identities=12% Similarity=0.304 Sum_probs=16.9
Q ss_pred eEEEEeecCCcceeeeC-CCCCCCCHHHHHHHHh
Q 011574 176 KTIRCSLSETKNRLFIG-NVPKNWTEDEFRKVIE 208 (482)
Q Consensus 176 ~~l~v~~~~~~~~l~v~-nLp~~~t~~~l~~~f~ 208 (482)
--|.|.+...+..|-|+ .|-..+|+.....+..
T Consensus 101 vLLlVa~~dr~~rIevGyGLEg~ltD~~a~~iIr 134 (271)
T COG1512 101 VLLLVAMNDRRVRIEVGYGLEGVLTDAQAGRIIR 134 (271)
T ss_pred EEEEEEcCCCeEEEEEecCcccccChHHHHHHHH
Confidence 44445544444444443 4666666665555533
No 272
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=53.52 E-value=12 Score=29.47 Aligned_cols=55 Identities=27% Similarity=0.359 Sum_probs=29.8
Q ss_pred EEEECCCCCC---------CCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCH-HHHHHHH
Q 011574 108 EVFIGGLPKD---------ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK-EFAKKAI 165 (482)
Q Consensus 108 ~v~v~nLp~~---------~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~-e~A~~al 165 (482)
++.|-|+|.. ++.+.|++.|+.|..+. ++.+..+. -..|+++|.|..- .--..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHH
Confidence 4667777654 35578999999998764 55555543 4678999999865 4444455
No 273
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=53.44 E-value=26 Score=35.46 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=8.9
Q ss_pred CEEEECCCCCCCC
Q 011574 107 SEVFIGGLPKDAS 119 (482)
Q Consensus 107 ~~v~v~nLp~~~t 119 (482)
++-.|+|||..+=
T Consensus 119 ~rntvgnipl~wY 131 (733)
T KOG0650|consen 119 TRNTVGNIPLKWY 131 (733)
T ss_pred hhcccCCcccccc
Confidence 4556888887653
No 274
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=52.11 E-value=9.5 Score=41.00 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=5.7
Q ss_pred CEEEECCCCC
Q 011574 107 SEVFIGGLPK 116 (482)
Q Consensus 107 ~~v~v~nLp~ 116 (482)
..+||-.+|.
T Consensus 905 ~~~wvl~~Pi 914 (1096)
T TIGR00927 905 QAIYLFLLPI 914 (1096)
T ss_pred eeEeEEecch
Confidence 3466666664
No 275
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=50.42 E-value=3.8 Score=40.50 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=51.6
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEE
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l 352 (482)
.+.|||.|+++.++-.+|..+|+.+-.+..+.+.....-+ ..+..|+|.---....|+.+||++.+....+
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 4789999999999999999999988766666655444322 4578899986656666666667666654433
No 276
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=49.79 E-value=15 Score=40.45 Aligned_cols=10 Identities=10% Similarity=0.541 Sum_probs=4.1
Q ss_pred HHHHHHhhhC
Q 011574 202 EFRKVIEDVG 211 (482)
Q Consensus 202 ~l~~~f~~~G 211 (482)
+|..++..||
T Consensus 1521 DI~ail~tyG 1530 (1640)
T KOG0262|consen 1521 DIHAILNTYG 1530 (1640)
T ss_pred hHHHHHHHhh
Confidence 3334444444
No 277
>KOG4761 consensus Proteasome formation inhibitor PI31 [Posttranslational modification, protein turnover, chaperones]
Probab=49.67 E-value=1.7e+02 Score=26.17 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=5.4
Q ss_pred CCCCCCCCCCCCC
Q 011574 440 PGVQMPPPRPRRV 452 (482)
Q Consensus 440 ~~~~~~~~~~~~~ 452 (482)
+++.|.+.+|+++
T Consensus 249 ~gpnpdh~~PP~~ 261 (266)
T KOG4761|consen 249 PGPNPDHLPPPGY 261 (266)
T ss_pred CCCCccccCCCCC
Confidence 3344444444443
No 278
>PHA03169 hypothetical protein; Provisional
Probab=48.11 E-value=60 Score=30.80 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=3.9
Q ss_pred HHHHHhhh
Q 011574 203 FRKVIEDV 210 (482)
Q Consensus 203 l~~~f~~~ 210 (482)
.+.||.++
T Consensus 303 r~~Ffr~~ 310 (413)
T PHA03169 303 RRRFFRQV 310 (413)
T ss_pred HHHHHHHh
Confidence 34455554
No 279
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=47.97 E-value=11 Score=31.13 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=63.7
Q ss_pred CCCHHHHHHhhcc-CCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCCcc--------
Q 011574 117 DASEEDLRDLCEP-IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN-------- 187 (482)
Q Consensus 117 ~~t~~~l~~~f~~-~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~~~-------- 187 (482)
..+-..|...+.+ .+....+.+..- ..++..+.|.+.+++.+++. .....+.+..|.+....+..
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~ 101 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFE 101 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccccccee
Confidence 4556666665544 232223333221 14589999999999999994 46667788888777655321
Q ss_pred ----eeeeCCCCCC-CCHHHHHHHHhhhCCcccEEEE
Q 011574 188 ----RLFIGNVPKN-WTEDEFRKVIEDVGPGVETIEL 219 (482)
Q Consensus 188 ----~l~v~nLp~~-~t~~~l~~~f~~~G~~i~~~~~ 219 (482)
=+.|.+||.. ++++-++.+.+.+|. +..+..
T Consensus 102 ~~~vWVri~glP~~~~~~~~~~~i~~~iG~-~i~vD~ 137 (153)
T PF14111_consen 102 HIPVWVRIYGLPLHLWSEEILKAIGSKIGE-PIEVDE 137 (153)
T ss_pred ccchhhhhccCCHHHhhhHHHHHHHHhcCC-eEEEEc
Confidence 1556799987 788899999999997 444443
No 280
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=47.43 E-value=25 Score=29.57 Aligned_cols=55 Identities=11% Similarity=0.183 Sum_probs=37.1
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC--C-CcEEEEEeCCHHHHHHHHHH
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--K-RDFGFIHYAERSSALKAVKD 341 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~--~-kg~afV~f~~~e~A~~A~~~ 341 (482)
++++.. +.....++|.++-+ |.+..|.+.+.... . +|-.||+|.+.+.|.+.+..
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 455555 22233344444444 68888887766554 3 89999999999999987763
No 281
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.37 E-value=58 Score=30.85 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=10.2
Q ss_pred cceEEEEeCCHHHHHH
Q 011574 148 KGFAFVSFRSKEFAKK 163 (482)
Q Consensus 148 ~g~afV~f~~~e~A~~ 163 (482)
|+.+||....+..|.+
T Consensus 154 r~sv~lkl~kp~~air 169 (377)
T KOG1308|consen 154 RASVFLKLKKPNAAIR 169 (377)
T ss_pred ccceeeeccCCchhhh
Confidence 5567777776655544
No 282
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=47.08 E-value=12 Score=34.64 Aligned_cols=7 Identities=14% Similarity=0.112 Sum_probs=4.2
Q ss_pred CEEEECC
Q 011574 107 SEVFIGG 113 (482)
Q Consensus 107 ~~v~v~n 113 (482)
+.+|..+
T Consensus 85 ~~~F~~~ 91 (285)
T PF03896_consen 85 TILFPKP 91 (285)
T ss_pred EEEeccc
Confidence 4566666
No 283
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=46.86 E-value=19 Score=35.73 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=13.9
Q ss_pred EEEECCCCCCCCHHHHHHhh
Q 011574 108 EVFIGGLPKDASEEDLRDLC 127 (482)
Q Consensus 108 ~v~v~nLp~~~t~~~l~~~f 127 (482)
+-.|+.||--++.++-..++
T Consensus 800 k~~lk~lpvfa~ad~ya~~l 819 (821)
T COG5593 800 KNMLKSLPVFASADDYAQYL 819 (821)
T ss_pred HHHHhcCCcccchHHHHHHh
Confidence 34577888877777766654
No 284
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=44.94 E-value=53 Score=29.85 Aligned_cols=46 Identities=11% Similarity=0.269 Sum_probs=34.6
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccccee-EEEcCCCCCCCCcEEEEEeCCH
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVT-KVVMPPGKSGKRDFGFIHYAER 332 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~~~kg~afV~f~~~ 332 (482)
.-|+++||+.++--.+|+..+.+-+.+- +|...- ..+-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg----~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG----HFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeec----CCcceeEecCCc
Confidence 4599999999999999999998876443 443322 246799999753
No 285
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=44.44 E-value=48 Score=22.64 Aligned_cols=10 Identities=40% Similarity=0.474 Sum_probs=6.0
Q ss_pred CCCCCCCCCC
Q 011574 471 DDGNRGRRYR 480 (482)
Q Consensus 471 ~~~~~g~r~~ 480 (482)
.++.+|+++|
T Consensus 61 ~Gw~~g~wgr 70 (71)
T PF04202_consen 61 NGWKRGRWGR 70 (71)
T ss_pred cccccCcccc
Confidence 3466766655
No 286
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=44.43 E-value=27 Score=35.71 Aligned_cols=8 Identities=0% Similarity=0.459 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 011574 297 EKIKELFQ 304 (482)
Q Consensus 297 ~~l~~~F~ 304 (482)
.+|+.+..
T Consensus 543 ~hLr~vi~ 550 (600)
T TIGR01651 543 RHLRAVIE 550 (600)
T ss_pred HHHHHHHH
Confidence 33444433
No 287
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=44.19 E-value=32 Score=32.78 Aligned_cols=65 Identities=12% Similarity=0.217 Sum_probs=45.1
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccc-eeEEEcCCCCCC---C-CcEEEEEeCCHHHHHHHHHHcCCcee
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGE-VTKVVMPPGKSG---K-RDFGFIHYAERSSALKAVKDTEKYEI 347 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~---~-kg~afV~f~~~e~A~~A~~~l~~~~~ 347 (482)
..|.|.+||..++.++|.+....|-. |....+.....+ . ...|+|.|...++...-...++|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 68999999999999998887777542 222222222111 1 46789999999997777776777654
No 288
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=43.84 E-value=1.1e+02 Score=21.46 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=19.9
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCCc
Q 011574 150 FAFVSFRSKEFAKKAIDELHSKEL 173 (482)
Q Consensus 150 ~afV~f~~~e~A~~al~~l~~~~~ 173 (482)
+.+|.|.+..+|.+|-+.|...-+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 689999999999999887765443
No 289
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=43.18 E-value=70 Score=26.15 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=38.7
Q ss_pred eEEEecCCCCCCHHHHHHHHhc-cc-ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 011574 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (482)
Q Consensus 284 ~l~v~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~ 340 (482)
+-++-.++...+..+|++.++. |+ .|..|....-..+. --|||++....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~-KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL-KKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc-eEEEEEECCCCcHHHHHH
Confidence 4666667788999999999987 65 56666554444332 359999987777655443
No 290
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.10 E-value=28 Score=33.26 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=11.7
Q ss_pred EECCCCCCCCHHHHHHhhccC
Q 011574 110 FIGGLPKDASEEDLRDLCEPI 130 (482)
Q Consensus 110 ~v~nLp~~~t~~~l~~~f~~~ 130 (482)
|.--||.--+..+|...|-.+
T Consensus 354 fAq~lp~i~~p~d~y~~F~~~ 374 (514)
T KOG3130|consen 354 FAQELPTIRTPADIYRAFVDV 374 (514)
T ss_pred ccccCCccCCcchhhhhheec
Confidence 445566555666666555443
No 291
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=42.45 E-value=18 Score=35.68 Aligned_cols=9 Identities=22% Similarity=0.169 Sum_probs=5.2
Q ss_pred EEEEEeCCH
Q 011574 324 FGFIHYAER 332 (482)
Q Consensus 324 ~afV~f~~~ 332 (482)
-|.+.+.+.
T Consensus 443 ~ap~~~s~~ 451 (694)
T KOG4264|consen 443 RAPSHQSDR 451 (694)
T ss_pred ccccccccc
Confidence 466666543
No 292
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=42.27 E-value=18 Score=35.77 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=14.3
Q ss_pred hcCCCCCCCEEEECCCCCCC
Q 011574 99 LLALPPNGSEVFIGGLPKDA 118 (482)
Q Consensus 99 ~~~~~~~~~~v~v~nLp~~~ 118 (482)
.....+.+.+++-+.|.+++
T Consensus 172 al~~Dp~GaR~~sGs~Dy~v 191 (641)
T KOG0772|consen 172 ALAVDPSGARFVSGSLDYTV 191 (641)
T ss_pred EeeecCCCceeeeccccceE
Confidence 44455677888888888765
No 293
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=42.19 E-value=40 Score=33.60 Aligned_cols=7 Identities=43% Similarity=0.605 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 011574 159 EFAKKAI 165 (482)
Q Consensus 159 e~A~~al 165 (482)
+-|.++|
T Consensus 321 QrAR~~i 327 (432)
T PF09073_consen 321 QRARRAI 327 (432)
T ss_pred HHHHHHH
Confidence 3455544
No 294
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=40.96 E-value=18 Score=34.11 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=5.5
Q ss_pred CCCCHHHHHHHHh
Q 011574 292 DNTSTEKIKELFQ 304 (482)
Q Consensus 292 ~~~t~~~l~~~F~ 304 (482)
+..++..|.+..+
T Consensus 511 pnq~e~kldq~~s 523 (542)
T KOG0699|consen 511 PNQTEDKLDQSAS 523 (542)
T ss_pred CcchhhHHHHHHH
Confidence 3344444444443
No 295
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.88 E-value=4.3 Score=38.93 Aligned_cols=77 Identities=6% Similarity=0.003 Sum_probs=59.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
.+.|+..||...++.++.-+|..||.|..+.+.+.-++. +-.+||+-. ..+|..+|..+.-..+.+..++|.++...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~-~~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAK-KANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeee-ccCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 356778899999999999999999999999887776655 667888774 34566666666666777888888887643
No 296
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=39.82 E-value=19 Score=38.83 Aligned_cols=7 Identities=29% Similarity=0.676 Sum_probs=3.1
Q ss_pred eEEEEeC
Q 011574 150 FAFVSFR 156 (482)
Q Consensus 150 ~afV~f~ 156 (482)
+-.|.|-
T Consensus 933 ~y~ltFi 939 (1096)
T TIGR00927 933 FFVITFL 939 (1096)
T ss_pred eeeehHH
Confidence 4444444
No 297
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.69 E-value=5.2 Score=38.36 Aligned_cols=77 Identities=6% Similarity=-0.128 Sum_probs=58.5
Q ss_pred CEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
++.|+..||...++.++.-+|..||.|.-+.+.+..+.+...-.+||...+ ..|..||..+.-..+++..++|..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 456788999999999999999999999888877666556666678887664 34667776666666777777776654
No 298
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=39.23 E-value=16 Score=34.95 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=50.0
Q ss_pred CCCEEEECCCCCCCCHH--------HHHHhhcc--CCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHH
Q 011574 105 NGSEVFIGGLPKDASEE--------DLRDLCEP--IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~--------~l~~~f~~--~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al 165 (482)
.-+.+|+.+.....+.+ ++...|.. .+.+..|...++.....++|..|++|+....|++++
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 34567888887765554 89999988 678888888888766788999999999999999887
No 299
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=38.87 E-value=4.4e+02 Score=26.84 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=7.2
Q ss_pred CceeCCcEEE
Q 011574 344 KYEIDGQVLE 353 (482)
Q Consensus 344 ~~~~~g~~l~ 353 (482)
|....|+.|+
T Consensus 427 GLn~~Gqsir 436 (582)
T PF03276_consen 427 GLNARGQSIR 436 (582)
T ss_pred Cccccccccc
Confidence 5566778888
No 300
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.71 E-value=50 Score=34.84 Aligned_cols=8 Identities=13% Similarity=0.114 Sum_probs=3.4
Q ss_pred EEEEeCCH
Q 011574 151 AFVSFRSK 158 (482)
Q Consensus 151 afV~f~~~ 158 (482)
.+|.+++.
T Consensus 772 ~~i~~~~~ 779 (968)
T KOG1060|consen 772 THIEEKSI 779 (968)
T ss_pred ccCcchhH
Confidence 34444433
No 301
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=38.11 E-value=28 Score=30.75 Aligned_cols=35 Identities=20% Similarity=0.468 Sum_probs=29.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVM 314 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i 314 (482)
....+||+-|||..+|++.|..+.+++|.+..+..
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 44579999999999999999999999986665443
No 302
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=37.70 E-value=27 Score=34.55 Aligned_cols=13 Identities=38% Similarity=0.360 Sum_probs=6.3
Q ss_pred EEEeCCHHHHHHH
Q 011574 152 FVSFRSKEFAKKA 164 (482)
Q Consensus 152 fV~f~~~e~A~~a 164 (482)
.=.|...+.|-+.
T Consensus 213 HDrF~e~eQaPKS 225 (694)
T KOG4264|consen 213 HDRFDEKEQAPKS 225 (694)
T ss_pred cccchhhhcCchH
Confidence 3445555555443
No 303
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=35.97 E-value=94 Score=21.70 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=40.4
Q ss_pred HHHHHHHhccc-ceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 297 EKIKELFQRHG-EVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 297 ~~l~~~F~~~G-~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
++|++-|...| .|..|.-+..+.++ -..-||+++...+...+ ++=..|++..|+|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 46777888777 67777766666333 45678888765553333 3445788888888876544
No 304
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=35.63 E-value=1.1e+02 Score=29.46 Aligned_cols=78 Identities=18% Similarity=0.358 Sum_probs=56.5
Q ss_pred cCcceEEEecCCCC-CCHHHHHHHHhcc----cceeEEEcCCCCC-----------------------------------
Q 011574 280 SQVKALYVKNIPDN-TSTEKIKELFQRH----GEVTKVVMPPGKS----------------------------------- 319 (482)
Q Consensus 280 ~~~~~l~v~nlp~~-~t~~~l~~~F~~~----G~v~~v~i~~~~~----------------------------------- 319 (482)
...++|-|-||.|. +...+|..+|+.| |.|..|.|.+..-
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Confidence 44578999999975 6778899999876 5677776642100
Q ss_pred ------C-------CCc-------------------EEEEEeCCHHHHHHHHHHcCCceeCC--cEEEEEEc
Q 011574 320 ------G-------KRD-------------------FGFIHYAERSSALKAVKDTEKYEIDG--QVLEVVLA 357 (482)
Q Consensus 320 ------~-------~kg-------------------~afV~f~~~e~A~~A~~~l~~~~~~g--~~l~v~~a 357 (482)
+ -+| ||.|+|.+.+.+......++|..+.. ..+.+.|.
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 0 011 78999999999999999999988764 45556554
No 305
>KOG3118 consensus Disrupter of silencing SAS10 [Chromatin structure and dynamics]
Probab=35.43 E-value=12 Score=36.56 Aligned_cols=27 Identities=15% Similarity=0.380 Sum_probs=15.6
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccC
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPI 130 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~ 130 (482)
...+++.+-|.|..--...|+.+|..|
T Consensus 188 ~~a~~~l~~~~~~~~~d~~le~i~kdl 214 (517)
T KOG3118|consen 188 KQATKVLTFNKPKEDKDTHLEEIVKDL 214 (517)
T ss_pred ccceehhhhcCcchhHHHHHHHHHHHH
Confidence 345566777777655555555555444
No 306
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=34.76 E-value=35 Score=35.36 Aligned_cols=10 Identities=10% Similarity=0.169 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 011574 332 RSSALKAVKD 341 (482)
Q Consensus 332 ~e~A~~A~~~ 341 (482)
..+|..+|..
T Consensus 516 I~eah~~L~e 525 (595)
T PF05470_consen 516 IKEAHQCLSE 525 (595)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 307
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=33.30 E-value=1.3e+02 Score=19.39 Aligned_cols=42 Identities=10% Similarity=0.308 Sum_probs=29.1
Q ss_pred HHHHHHHhccc-ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHH
Q 011574 297 EKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (482)
Q Consensus 297 ~~l~~~F~~~G-~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~ 339 (482)
..|..+|.+.| .|..+.+.... +......+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR-GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECCHHHHHHHh
Confidence 45667777776 77777765543 33567778888888887765
No 308
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=33.09 E-value=44 Score=31.75 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=25.1
Q ss_pred EEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 325 GFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 325 afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
|||+|++..+|..|++.+.... .+.++|..|..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 7999999999999998654433 355577776544
No 309
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=31.96 E-value=1.9e+02 Score=21.54 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=34.4
Q ss_pred HHHHHHHHhccc-ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcC
Q 011574 296 TEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (482)
Q Consensus 296 ~~~l~~~F~~~G-~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~ 343 (482)
.+.++++++++| .+.++.+...... ....+++.+.+.|.++...+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD--~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYD--FVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCC--EEEEEEcCCHHHHHHHHHHHH
Confidence 356788888876 8888888766543 678889999998888775544
No 310
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=31.53 E-value=32 Score=35.23 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=5.3
Q ss_pred CccccccccccC
Q 011574 12 DLEEDNYMEEMD 23 (482)
Q Consensus 12 ~~~~~~~~e~~~ 23 (482)
+++.++++||++
T Consensus 520 EVdSDeEWEEEe 531 (811)
T KOG4364|consen 520 EVDSDEEWEEEE 531 (811)
T ss_pred cccCcccccccC
Confidence 344444444443
No 311
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=30.45 E-value=43 Score=30.31 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=3.9
Q ss_pred CCCCHHHHH
Q 011574 196 KNWTEDEFR 204 (482)
Q Consensus 196 ~~~t~~~l~ 204 (482)
..+|.++|.
T Consensus 183 ~~lTQeElL 191 (240)
T PF05764_consen 183 RPLTQEELL 191 (240)
T ss_pred CCCCHHHHH
Confidence 334444443
No 312
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=30.18 E-value=38 Score=29.94 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=28.2
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEE
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEV 136 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v 136 (482)
.....+||+-|||..+|++.|..+.+++|-+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3455789999999999999999999999854433
No 313
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=28.92 E-value=66 Score=22.68 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=21.6
Q ss_pred cEEEEEeCCHHHHHHHHHHcCCceeCC
Q 011574 323 DFGFIHYAERSSALKAVKDTEKYEIDG 349 (482)
Q Consensus 323 g~afV~f~~~e~A~~A~~~l~~~~~~g 349 (482)
.+.+|.|.+..+|.+|-+.|....|..
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 468999999999999998877655433
No 314
>PF04626 DEC-1_C: Dec-1 protein, C terminal region; InterPro: IPR006720 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Alternative splicing generates different carboxy terminal ends in different protein isoforms. This domain is the most C-terminal region that is present in the main isoforms.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=28.80 E-value=58 Score=25.13 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=6.3
Q ss_pred CCCCCCCCCCCCCC
Q 011574 453 DRSNGPGGRGGRGG 466 (482)
Q Consensus 453 ~~~~g~~~~gg~gg 466 (482)
++++||.|...||.
T Consensus 80 sYg~ggyGsnaYG~ 93 (132)
T PF04626_consen 80 SYGGGGYGSNAYGV 93 (132)
T ss_pred eecCCcccccccCC
Confidence 34444444444443
No 315
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=28.17 E-value=59 Score=28.75 Aligned_cols=10 Identities=0% Similarity=-0.040 Sum_probs=4.3
Q ss_pred CCHHHHHHhh
Q 011574 118 ASEEDLRDLC 127 (482)
Q Consensus 118 ~t~~~l~~~f 127 (482)
++..++++.|
T Consensus 150 ~DW~Em~~Ai 159 (217)
T PF07423_consen 150 VDWNEMLKAI 159 (217)
T ss_pred cCHHHHHHHH
Confidence 3444444444
No 316
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.54 E-value=46 Score=30.09 Aligned_cols=6 Identities=17% Similarity=0.434 Sum_probs=2.4
Q ss_pred CCHHHH
Q 011574 294 TSTEKI 299 (482)
Q Consensus 294 ~t~~~l 299 (482)
+|.++|
T Consensus 185 lTQeEl 190 (240)
T PF05764_consen 185 LTQEEL 190 (240)
T ss_pred CCHHHH
Confidence 344433
No 317
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=27.13 E-value=1.5e+02 Score=24.38 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=37.0
Q ss_pred EEECCCCCCCCHHHHHHhhcc-CC-CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHH
Q 011574 109 VFIGGLPKDASEEDLRDLCEP-IG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165 (482)
Q Consensus 109 v~v~nLp~~~t~~~l~~~f~~-~G-~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al 165 (482)
.++--+...++..+|+..++. |+ .|..|..+.-+. |.- -|||.+....+|....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~K--KA~V~L~~~~~aidva 139 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GLK--KAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cce--EEEEEECCCCcHHHHH
Confidence 555567788999999998876 55 666776655433 222 4999998777655443
No 318
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=26.90 E-value=2.4e+02 Score=20.19 Aligned_cols=61 Identities=7% Similarity=0.121 Sum_probs=38.8
Q ss_pred EEEecCCCCCCHHHHHHHHhc-------ccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCce
Q 011574 285 LYVKNIPDNTSTEKIKELFQR-------HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (482)
Q Consensus 285 l~v~nlp~~~t~~~l~~~F~~-------~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~ 346 (482)
|-.++||..+|.++|.....+ +..|.-++-.......+-||+..=.+.+...++.+.. |..
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~a-G~p 70 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRA-GLP 70 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHc-CCC
Confidence 567889988999998877653 3345544433333233567777777888877777643 543
No 319
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=26.85 E-value=2e+02 Score=19.10 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=39.4
Q ss_pred eEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCH----HHHHHHHHH
Q 011574 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAER----SSALKAVKD 341 (482)
Q Consensus 284 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~----e~A~~A~~~ 341 (482)
+|.|.||.-..-...|++.+...-.|..+.+.... +.+-|.|... +...++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~----~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET----KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT----TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC----CEEEEEEecCCCCHHHHHHHHHH
Confidence 46777777666678899999988888888886665 6688888743 555556654
No 320
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only]
Probab=26.60 E-value=4.9e+02 Score=23.63 Aligned_cols=8 Identities=0% Similarity=0.455 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q 011574 201 DEFRKVIE 208 (482)
Q Consensus 201 ~~l~~~f~ 208 (482)
+.+-+++.
T Consensus 100 ~ti~~ilk 107 (390)
T KOG2192|consen 100 ETIGEILK 107 (390)
T ss_pred HHHHHHHH
Confidence 33333333
No 321
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=26.31 E-value=92 Score=28.69 Aligned_cols=11 Identities=0% Similarity=0.048 Sum_probs=5.2
Q ss_pred cCCCCCCHHHH
Q 011574 289 NIPDNTSTEKI 299 (482)
Q Consensus 289 nlp~~~t~~~l 299 (482)
+|-..+|+..-
T Consensus 119 GLEg~ltD~~a 129 (271)
T COG1512 119 GLEGVLTDAQA 129 (271)
T ss_pred CcccccChHHH
Confidence 44445555443
No 322
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=26.26 E-value=27 Score=34.79 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=12.5
Q ss_pred ceeeeCCCCCCCCHHHHHH
Q 011574 187 NRLFIGNVPKNWTEDEFRK 205 (482)
Q Consensus 187 ~~l~v~nLp~~~t~~~l~~ 205 (482)
.+|.|++|.-..-+..|+.
T Consensus 283 ~~L~vGGL~lk~QE~~LRs 301 (691)
T KOG0338|consen 283 VGLAVGGLDLKAQEAVLRS 301 (691)
T ss_pred eeeeecCccHHHHHHHHhh
Confidence 4677788877666665554
No 323
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=26.17 E-value=53 Score=29.04 Aligned_cols=13 Identities=23% Similarity=-0.074 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhCC
Q 011574 158 KEFAKKAIDELHS 170 (482)
Q Consensus 158 ~e~A~~al~~l~~ 170 (482)
-.+..+||..-.+
T Consensus 152 W~Em~~Ais~atg 164 (217)
T PF07423_consen 152 WNEMLKAISYATG 164 (217)
T ss_pred HHHHHHHHHHhhC
Confidence 3556666655443
No 324
>PRK11901 hypothetical protein; Reviewed
Probab=25.41 E-value=2e+02 Score=27.18 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=43.9
Q ss_pred hcCCCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEE--EeCCHHHHHHHHHHhCC
Q 011574 99 LLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFV--SFRSKEFAKKAIDELHS 170 (482)
Q Consensus 99 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV--~f~~~e~A~~al~~l~~ 170 (482)
....+....+|-|-.+ ..++.|..|..+++ +..++++.....|+. .|..| .|.+.++|+.|++.|-.
T Consensus 238 L~s~p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 238 LSSAPASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred hhcCCCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 3445556667766665 35778888888775 345666554443332 34433 68999999999988764
No 325
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.08 E-value=25 Score=35.85 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=9.6
Q ss_pred HHHHhhccCCCeeEEEE
Q 011574 122 DLRDLCEPIGDVFEVRL 138 (482)
Q Consensus 122 ~l~~~f~~~G~v~~v~~ 138 (482)
..++-|++|--+.++.-
T Consensus 466 ~ArerfqkYRGLksl~T 482 (754)
T KOG1980|consen 466 SARERFQKYRGLKSLRT 482 (754)
T ss_pred HHHHHHHHhcccccccc
Confidence 35566666655555543
No 326
>KOG2266 consensus Chromatin-associated protein Dek and related proteins, contains SAP DNA binding domain [Chromatin structure and dynamics]
Probab=24.23 E-value=93 Score=30.71 Aligned_cols=161 Identities=22% Similarity=0.318 Sum_probs=0.0
Q ss_pred ccccccCccccccccccCcccccccccCCcccCCCCCCCCCCCchhhcccccccccccchhhcCCCCCCCCCcc--cccC
Q 011574 6 EVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGASEKDQSAEANRNDDDTPHVE--EEEK 83 (482)
Q Consensus 6 ~~ee~~~~~~~~~~e~~~~~~~~~~~~~~~ee~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 83 (482)
++.+..+..-.++-++..++.+++-.++.++..+++.+..++|.++..........................+. +...
T Consensus 83 eek~~kes~~~Dekee~~~e~deEk~Ed~De~e~~e~E~~~ddkedkke~~~~se~~~kg~tk~r~ksk~de~Kk~Ep~t 162 (594)
T KOG2266|consen 83 EEKEIKESEKKDEKEESMDEKDEEKEEDEDEPEEDEKEEGEDDKEDKKEPSKDSEKRGKGATKSRPKSKADEEKKPEPKT 162 (594)
T ss_pred hhccccccccccccccccccchhhhcccccchhhhhhhhccchhhhhcccchhhhhhcccccccccccccccccccCCCC
Q ss_pred CCCCCCcchhhHHhhhcCCCC------------CCCEEEECCCCC-------CCCHHHHHHhh-ccCCCeeEEEEeccCC
Q 011574 84 PTASVGEDEKDKHAQLLALPP------------NGSEVFIGGLPK-------DASEEDLRDLC-EPIGDVFEVRLMKDKE 143 (482)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~------------~~~~v~v~nLp~-------~~t~~~l~~~f-~~~G~v~~v~~~~~~~ 143 (482)
+.......+++.......... .++-+.|.-||. .-+.+.|+.|- --||.-..+.++....
T Consensus 163 p~serp~rErk~ver~~~~~d~ds~~ske~~iekgrgt~LkeIpnVa~klskkk~De~L~~LHtIlfGk~gKa~~lKkNi 242 (594)
T KOG2266|consen 163 PFSERPVRERKKVERLVADVDKDSNKSKEFSIEKGRGTPLKEIPNVAYKLSKKKSDENLKLLHTILFGKKGKAQMLKKNI 242 (594)
T ss_pred CcccccchhhhhhhhhhhccccccccCCcceecccCCcchhhcchHHHHhhhcccchHHHHHHHHHhCChhHHHHHHHhh
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHh
Q 011574 144 SGESKGFAFVSFRSKEFAKKAIDEL 168 (482)
Q Consensus 144 ~g~~~g~afV~f~~~e~A~~al~~l 168 (482)
+...||.|-. .....-.+.++.|
T Consensus 243 -~~FSGF~w~~-~eekq~~K~kEkl 265 (594)
T KOG2266|consen 243 -GQFSGFVWSK-EEEKQYAKKKEKL 265 (594)
T ss_pred -hcccCccccc-chHHHHHHHHHHH
No 327
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=24.11 E-value=60 Score=32.50 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=8.4
Q ss_pred EecCCCCCCHHHHHHHHh
Q 011574 287 VKNIPDNTSTEKIKELFQ 304 (482)
Q Consensus 287 v~nlp~~~t~~~l~~~F~ 304 (482)
+-|++..+++..|+.++.
T Consensus 478 ~p~~~~~v~e~~vR~~l~ 495 (555)
T KOG2393|consen 478 VPGSDIKVNEEAVRRYLE 495 (555)
T ss_pred CCCcccchhHHHHHHHHh
Confidence 333344455555555444
No 328
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.97 E-value=7.3e+02 Score=24.75 Aligned_cols=8 Identities=25% Similarity=0.546 Sum_probs=4.5
Q ss_pred EEECCCCC
Q 011574 109 VFIGGLPK 116 (482)
Q Consensus 109 v~v~nLp~ 116 (482)
+.+.-||.
T Consensus 187 ~ll~elPp 194 (483)
T KOG2236|consen 187 HLLDELPP 194 (483)
T ss_pred hhhhcCCC
Confidence 45556665
No 329
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=23.41 E-value=1.7e+02 Score=28.16 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=29.9
Q ss_pred CCCCEEEECCCCCC-CCHHHHHHhhccC----CCeeEEEEeccC
Q 011574 104 PNGSEVFIGGLPKD-ASEEDLRDLCEPI----GDVFEVRLMKDK 142 (482)
Q Consensus 104 ~~~~~v~v~nLp~~-~t~~~l~~~f~~~----G~v~~v~~~~~~ 142 (482)
....+|-|-||.|+ +...+|...|+.| |+|..|.|+...
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypse 187 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSE 187 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhh
Confidence 34567889999986 6778898888776 578888887653
No 330
>PF15063 TC1: Thyroid cancer protein 1
Probab=23.19 E-value=41 Score=23.76 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=33.7
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccccee---EEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHc
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVT---KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~---~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l 342 (482)
++--+.||=.+++...|..+|..-|... +++|+.. .-.++++..+||..|
T Consensus 26 RKkasaNIFe~vn~~qlqrLF~~sGD~kAEeRA~iI~~----------~~~d~ee~a~AL~~L 78 (79)
T PF15063_consen 26 RKKASANIFENVNLDQLQRLFQKSGDKKAEERARIIWE----------CAQDPEEKARALMAL 78 (79)
T ss_pred hhhhhhhhhhccCHHHHHHHHHHccchhHHHHHHHHHh----------hCCCHHHHHHHHHhc
Confidence 4455678888999999999999998654 3444322 223666666666554
No 331
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=22.85 E-value=85 Score=31.58 Aligned_cols=42 Identities=19% Similarity=0.331 Sum_probs=36.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCCCC
Q 011574 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (482)
Q Consensus 322 kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 363 (482)
..++++.|++...+.+|+..++|..+.+..+++..+......
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~~ 104 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVGS 104 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccccc
Confidence 579999999999999999999999999988888877655443
No 332
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=22.80 E-value=2.5e+02 Score=18.94 Aligned_cols=49 Identities=10% Similarity=0.209 Sum_probs=32.1
Q ss_pred CHHHHHHHHhccc-ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCce
Q 011574 295 STEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (482)
Q Consensus 295 t~~~l~~~F~~~G-~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~ 346 (482)
.-.+|-++|.+.| .|.++.+..... +++..|.+.+.+.|.++|.. +|..
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE--FGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEECCHHHHHHHHHH-CCCE
Confidence 4567788888877 677877654432 35556667777777777764 4443
No 333
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=22.63 E-value=53 Score=34.12 Aligned_cols=8 Identities=13% Similarity=0.289 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 011574 243 ADYSRQKM 250 (482)
Q Consensus 243 a~~a~~~~ 250 (482)
|..++..+
T Consensus 389 ~r~~lrrl 396 (595)
T PF05470_consen 389 ARVALRRL 396 (595)
T ss_pred HHHHHHHH
Confidence 33344433
No 334
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=22.55 E-value=2.8e+02 Score=19.42 Aligned_cols=50 Identities=14% Similarity=0.284 Sum_probs=32.2
Q ss_pred CHHHHHHHHhccc-ceeEEEcCCCCCCC-CcEEEEEeC-CHHHHHHHHHHcCC
Q 011574 295 STEKIKELFQRHG-EVTKVVMPPGKSGK-RDFGFIHYA-ERSSALKAVKDTEK 344 (482)
Q Consensus 295 t~~~l~~~F~~~G-~v~~v~i~~~~~~~-kg~afV~f~-~~e~A~~A~~~l~~ 344 (482)
+--++.+.|+.+| .++.|.-.+.+... .-+-||+|. ..+...+|+..|..
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 3567888898887 67777766655443 334577776 44455667776643
No 335
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=22.12 E-value=95 Score=36.79 Aligned_cols=20 Identities=10% Similarity=-0.064 Sum_probs=9.7
Q ss_pred cEEEEEeCCHHHHHHHHHHc
Q 011574 323 DFGFIHYAERSSALKAVKDT 342 (482)
Q Consensus 323 g~afV~f~~~e~A~~A~~~l 342 (482)
++..+.|.+..-..+|+..|
T Consensus 4409 ~~~~la~etl~lvtkals~l 4428 (4600)
T COG5271 4409 GSTVLALETLALVTKALSLL 4428 (4600)
T ss_pred CceeeehHHHHHHHHHHHHH
Confidence 34444455555555555443
No 336
>PF11702 DUF3295: Protein of unknown function (DUF3295); InterPro: IPR021711 This family is conserved in fungi but the function is not known.
Probab=21.64 E-value=55 Score=32.73 Aligned_cols=7 Identities=29% Similarity=0.909 Sum_probs=2.8
Q ss_pred CCCchhh
Q 011574 46 NDDDEEY 52 (482)
Q Consensus 46 ~~~~~~~ 52 (482)
|||+++|
T Consensus 309 DDDssDW 315 (507)
T PF11702_consen 309 DDDSSDW 315 (507)
T ss_pred Cccchhh
Confidence 3334444
No 337
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=20.58 E-value=4.1e+02 Score=27.14 Aligned_cols=65 Identities=25% Similarity=0.247 Sum_probs=43.0
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhc----cCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCE----PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~----~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~ 170 (482)
++..|.++.-..+.+--+|..+|. .+|-|+++.+...+.. ......++.|.+.++|..++..+..
T Consensus 188 ~G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~~ 256 (499)
T PRK11230 188 DGEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKP-PVARVLLASFDSVEKAGLAVGDIIA 256 (499)
T ss_pred CCcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCC-cceEEEEEECCCHHHHHHHHHHHHh
Confidence 445555553333333456777775 6788888877665542 3345778999999999999877643
No 338
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.12 E-value=1.8e+02 Score=29.62 Aligned_cols=58 Identities=29% Similarity=0.410 Sum_probs=0.0
Q ss_pred EECCCCCCCCH---HHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeE
Q 011574 110 FIGGLPKDASE---EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (482)
Q Consensus 110 ~v~nLp~~~t~---~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~ 177 (482)
+|+||+.-... ..+.++-++||+|..+++ -..-.|..++.+.|+.|+.. ++..+.+|+
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~l---------G~~~~Vviss~~~akE~l~~-~d~~fa~Rp 96 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRL---------GSVPVVVISSYEAAKEVLVK-QDLEFADRP 96 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEe---------cCceEEEECCHHHHHHHHHh-CCccccCCC
No 339
>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]
Probab=20.01 E-value=42 Score=31.89 Aligned_cols=66 Identities=24% Similarity=0.381 Sum_probs=0.0
Q ss_pred CCcccccccCccccccccccCcccccccccCCcccCCCCCCCCCCCchhhcccccccccccchhhcC
Q 011574 3 ESTEVEDRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGASEKDQSAEAN 69 (482)
Q Consensus 3 e~~~~ee~~~~~~~~~~e~~~~~~~~~~~~~~~ee~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (482)
+.+++++..-.-..+.-++ .+++|.+....++++..|++.+.+.-+++.++.....++..+.+...
T Consensus 26 e~E~ed~~~~t~q~s~~e~-~~DeEyE~~~~e~eDe~DsDfs~d~~~~~sDe~sed~~~~~d~~~k~ 91 (390)
T KOG2897|consen 26 ESEEEDDEYSTTQGSFSED-SHDEEYEGEESEEEDEVDSDFSIDETSNESDEESEDDKEEEDEDAKR 91 (390)
T ss_pred hhhhhhhHHhhhhcccccc-ccchhhhhhhhhhccccccccchhhccccCccccccccccccccccc
Done!