Query 011574
Match_columns 482
No_of_seqs 424 out of 3793
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 10:58:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 7E-45 2.4E-49 341.8 28.0 252 99-360 34-291 (292)
2 3smz_A Protein raver-1, ribonu 100.0 1.2E-44 4.1E-49 338.8 26.4 247 102-362 18-266 (284)
3 4f02_A Polyadenylate-binding p 100.0 1.6E-35 5.3E-40 264.0 14.6 170 105-362 14-183 (213)
4 1l3k_A Heterogeneous nuclear r 100.0 8.7E-33 3E-37 243.7 19.5 178 102-365 9-188 (196)
5 1b7f_A Protein (SXL-lethal pro 100.0 2.6E-32 8.8E-37 234.4 19.1 163 105-357 2-168 (168)
6 2qfj_A FBP-interacting repress 100.0 5.9E-32 2E-36 242.2 21.7 179 105-362 27-207 (216)
7 3md3_A Nuclear and cytoplasmic 100.0 5.6E-32 1.9E-36 231.8 19.6 163 107-358 1-165 (166)
8 1fxl_A Paraneoplastic encephal 100.0 8.5E-32 2.9E-36 230.9 20.2 162 106-357 2-167 (167)
9 2cjk_A Nuclear polyadenylated 100.0 3E-32 1E-36 233.7 15.5 163 105-360 2-166 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 1.6E-31 5.5E-36 231.1 19.0 165 105-358 2-175 (175)
11 3tyt_A Heterogeneous nuclear r 100.0 3.8E-30 1.3E-34 226.3 20.6 195 105-357 3-204 (205)
12 3pgw_A U1-A; protein-RNA compl 100.0 1.8E-29 6.1E-34 235.5 24.5 248 103-358 6-281 (282)
13 1fje_B Nucleolin RBD12, protei 100.0 7.6E-31 2.6E-35 226.7 12.9 165 102-360 9-174 (175)
14 2g4b_A Splicing factor U2AF 65 100.0 6.2E-30 2.1E-34 220.4 16.9 157 105-358 3-172 (172)
15 2yh0_A Splicing factor U2AF 65 100.0 1.3E-29 4.3E-34 223.8 19.3 181 105-362 3-196 (198)
16 2adc_A Polypyrimidine tract-bi 100.0 4.5E-29 1.5E-33 224.8 20.3 195 103-360 31-228 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 4.2E-29 1.4E-33 220.3 16.4 193 105-360 2-197 (198)
18 3sde_A Paraspeckle component 1 100.0 1.1E-28 3.9E-33 226.7 17.9 157 104-362 20-181 (261)
19 3smz_A Protein raver-1, ribonu 99.9 2.9E-26 9.8E-31 214.0 19.2 164 104-272 93-266 (284)
20 2ghp_A U4/U6 snRNA-associated 99.9 6.5E-26 2.2E-30 212.5 15.2 161 105-270 116-291 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 7.4E-22 2.5E-26 166.8 18.2 144 217-363 3-153 (158)
22 4f25_A Polyadenylate-binding p 99.9 5.1E-22 1.8E-26 157.6 10.1 97 104-202 3-113 (115)
23 4fxv_A ELAV-like protein 1; RN 99.8 4.5E-21 1.5E-25 147.3 10.8 83 103-185 16-98 (99)
24 2i2y_A Fusion protein consists 99.8 8.6E-21 2.9E-25 158.5 12.5 139 145-361 10-149 (150)
25 4fxv_A ELAV-like protein 1; RN 99.8 3.9E-20 1.3E-24 142.0 10.4 79 281-359 18-98 (99)
26 3s8s_A Histone-lysine N-methyl 99.8 1.7E-19 5.9E-24 141.1 11.4 83 104-186 4-86 (110)
27 3q2s_C Cleavage and polyadenyl 99.8 1.2E-20 4.3E-25 168.2 3.1 79 282-360 68-150 (229)
28 2lxi_A RNA-binding protein 10; 99.8 1.5E-19 5.2E-24 136.5 8.6 80 283-362 2-85 (91)
29 2lxi_A RNA-binding protein 10; 99.8 4.6E-20 1.6E-24 139.4 5.6 82 106-187 1-84 (91)
30 2lkz_A RNA-binding protein 5; 99.8 1.3E-19 4.3E-24 137.4 7.7 81 105-185 8-94 (95)
31 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.4E-18 4.9E-23 135.0 13.8 85 280-364 13-97 (103)
32 1h2v_Z 20 kDa nuclear CAP bind 99.8 4.3E-19 1.5E-23 149.2 11.4 84 280-363 37-122 (156)
33 3pgw_S U1-70K; protein-RNA com 99.8 1.6E-19 5.6E-24 176.1 9.5 83 280-362 100-184 (437)
34 4f25_A Polyadenylate-binding p 99.8 3.1E-19 1.1E-23 141.5 9.2 82 282-363 5-86 (115)
35 1whw_A Hypothetical protein ri 99.8 2E-18 7E-23 133.1 13.6 84 280-363 6-91 (99)
36 2cq3_A RNA-binding protein 9; 99.8 3E-18 1E-22 133.2 13.9 85 280-364 13-97 (103)
37 2dnz_A Probable RNA-binding pr 99.8 1.4E-18 4.8E-23 133.0 11.6 83 104-186 3-85 (95)
38 3lqv_A PRE-mRNA branch site pr 99.8 5.2E-19 1.8E-23 140.6 9.3 105 103-212 5-109 (115)
39 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.3E-18 4.3E-23 130.3 10.2 82 103-184 4-85 (85)
40 2dnz_A Probable RNA-binding pr 99.8 2.4E-18 8.1E-23 131.7 11.8 82 281-362 4-87 (95)
41 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.3E-18 4.4E-23 130.9 10.1 82 105-186 5-86 (87)
42 2dgx_A KIAA0430 protein; RRM d 99.8 2.5E-18 8.5E-23 131.6 11.8 82 280-362 7-92 (96)
43 2dgo_A Cytotoxic granule-assoc 99.8 5.9E-18 2E-22 134.4 14.5 85 280-364 13-99 (115)
44 3md1_A Nuclear and cytoplasmic 99.8 1.9E-18 6.7E-23 128.6 10.9 80 107-186 2-81 (83)
45 3s8s_A Histone-lysine N-methyl 99.8 1.4E-18 4.8E-23 135.9 10.5 81 281-361 5-87 (110)
46 1x5u_A Splicing factor 3B subu 99.8 3.8E-18 1.3E-22 133.2 12.8 84 280-363 13-98 (105)
47 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3E-18 1E-22 133.0 12.1 85 280-364 10-96 (102)
48 2cqd_A RNA-binding region cont 99.8 8E-18 2.7E-22 133.8 14.9 82 280-362 15-98 (116)
49 2lkz_A RNA-binding protein 5; 99.8 8.3E-19 2.8E-23 132.8 8.6 79 281-359 8-94 (95)
50 2d9p_A Polyadenylate-binding p 99.8 2.5E-18 8.6E-23 133.7 11.1 84 280-364 13-97 (103)
51 2do4_A Squamous cell carcinoma 99.8 4E-18 1.4E-22 131.7 12.2 83 280-362 15-98 (100)
52 2e5h_A Zinc finger CCHC-type a 99.8 2.1E-18 7.2E-23 131.7 10.5 82 103-184 13-94 (94)
53 2dgs_A DAZ-associated protein 99.8 4.1E-18 1.4E-22 131.4 12.2 84 280-364 8-93 (99)
54 2lea_A Serine/arginine-rich sp 99.8 8.4E-19 2.9E-23 142.9 8.7 124 231-363 5-130 (135)
55 1sjq_A Polypyrimidine tract-bi 99.8 1.2E-18 4E-23 133.0 8.9 81 280-364 14-96 (105)
56 1x4a_A Splicing factor, argini 99.8 6.8E-18 2.3E-22 132.6 13.6 81 280-361 20-100 (109)
57 2cq0_A Eukaryotic translation 99.8 2.1E-18 7.1E-23 134.1 10.5 83 104-186 13-95 (103)
58 1whw_A Hypothetical protein ri 99.8 2.2E-18 7.6E-23 133.0 10.5 85 103-187 5-89 (99)
59 1x5s_A Cold-inducible RNA-bind 99.8 2.4E-18 8.1E-23 133.6 10.7 84 280-363 10-95 (102)
60 2dgs_A DAZ-associated protein 99.8 3.6E-18 1.2E-22 131.7 11.6 83 103-186 7-89 (99)
61 1x5t_A Splicing factor 3B subu 99.8 3E-18 1E-22 131.5 11.1 83 281-363 4-89 (96)
62 2fy1_A RNA-binding motif prote 99.8 3.9E-18 1.3E-22 135.2 11.9 83 280-362 5-88 (116)
63 2x1f_A MRNA 3'-END-processing 99.8 2.8E-18 9.6E-23 131.5 10.7 84 106-189 2-85 (96)
64 2do0_A HnRNP M, heterogeneous 99.8 6.9E-18 2.4E-22 133.8 13.2 83 280-362 13-96 (114)
65 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.9E-18 6.5E-23 146.5 10.5 84 103-186 69-152 (165)
66 2jrs_A RNA-binding protein 39; 99.8 2.5E-18 8.6E-23 134.4 10.4 84 103-186 23-106 (108)
67 1x5u_A Splicing factor 3B subu 99.8 2.9E-18 9.9E-23 133.9 10.7 85 103-187 12-96 (105)
68 2dnm_A SRP46 splicing factor; 99.8 2.1E-18 7.2E-23 134.1 9.8 84 103-186 10-93 (103)
69 2cqc_A Arginine/serine-rich sp 99.8 2.2E-18 7.6E-23 131.9 9.8 83 103-185 12-94 (95)
70 1wi8_A EIF-4B, eukaryotic tran 99.8 7E-18 2.4E-22 131.3 12.7 82 280-363 13-97 (104)
71 3p5t_L Cleavage and polyadenyl 99.8 6.1E-19 2.1E-23 133.3 6.4 80 107-186 2-83 (90)
72 2cq1_A PTB-like protein L; RRM 99.8 7.8E-18 2.7E-22 128.9 12.5 81 280-364 13-95 (101)
73 3r27_A HnRNP L, heterogeneous 99.8 3E-18 1E-22 129.4 10.0 78 280-361 19-98 (100)
74 2cpz_A CUG triplet repeat RNA- 99.8 4.6E-18 1.6E-22 135.0 11.5 85 280-364 23-109 (115)
75 2dnm_A SRP46 splicing factor; 99.8 3.6E-18 1.2E-22 132.7 10.8 84 280-363 11-96 (103)
76 2la6_A RNA-binding protein FUS 99.8 3.9E-18 1.3E-22 131.5 10.8 84 101-184 8-99 (99)
77 2dgu_A Heterogeneous nuclear r 99.8 1.2E-17 4.1E-22 129.7 13.6 79 280-364 9-87 (103)
78 2cq0_A Eukaryotic translation 99.8 4.8E-18 1.6E-22 132.0 11.2 84 280-363 13-98 (103)
79 2do4_A Squamous cell carcinoma 99.8 4.6E-18 1.6E-22 131.4 11.0 82 104-186 15-96 (100)
80 2cph_A RNA binding motif prote 99.8 1E-17 3.5E-22 131.3 13.2 84 280-363 13-100 (107)
81 2kn4_A Immunoglobulin G-bindin 99.8 7.5E-18 2.6E-22 142.1 13.3 133 135-273 2-153 (158)
82 2cpz_A CUG triplet repeat RNA- 99.8 2.9E-18 9.8E-23 136.2 10.1 84 104-187 23-106 (115)
83 2dgo_A Cytotoxic granule-assoc 99.8 4.3E-18 1.5E-22 135.2 11.1 85 103-187 12-96 (115)
84 1x5t_A Splicing factor 3B subu 99.8 2E-18 6.8E-23 132.4 8.8 83 104-186 3-86 (96)
85 1x5s_A Cold-inducible RNA-bind 99.8 2.4E-18 8.3E-23 133.5 9.4 84 103-186 9-92 (102)
86 1x4h_A RNA-binding protein 28; 99.8 1.3E-17 4.5E-22 131.6 13.8 85 280-364 13-105 (111)
87 2dnh_A Bruno-like 5, RNA bindi 99.8 5.7E-18 2E-22 132.2 11.6 85 280-364 13-101 (105)
88 3md1_A Nuclear and cytoplasmic 99.8 5.1E-18 1.7E-22 126.3 10.4 79 283-361 2-82 (83)
89 3ex7_B RNA-binding protein 8A; 99.8 4E-18 1.4E-22 137.9 10.6 84 280-363 20-105 (126)
90 1x4d_A Matrin 3; structural ge 99.8 3.3E-18 1.1E-22 130.7 9.5 79 280-362 13-94 (102)
91 2wbr_A GW182, gawky, LD47780P; 99.8 4.5E-18 1.5E-22 123.2 9.6 73 105-183 6-78 (89)
92 3ns6_A Eukaryotic translation 99.8 8E-19 2.7E-23 135.3 6.1 82 105-186 5-93 (100)
93 3q2s_C Cleavage and polyadenyl 99.8 1.2E-18 4.2E-23 155.3 8.1 81 105-185 67-149 (229)
94 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.3E-18 1.5E-22 127.9 9.9 80 281-360 5-86 (87)
95 3mdf_A Peptidyl-prolyl CIS-tra 99.8 6.2E-18 2.1E-22 126.5 10.7 79 280-358 5-85 (85)
96 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.3E-18 7.8E-23 133.7 8.6 84 103-186 9-92 (102)
97 1u6f_A Tcubp1, RNA-binding pro 99.7 1.3E-17 4.3E-22 137.4 13.5 83 280-362 40-124 (139)
98 2wbr_A GW182, gawky, LD47780P; 99.7 4.2E-18 1.4E-22 123.3 9.2 73 282-358 7-79 (89)
99 1p27_B RNA-binding protein 8A; 99.7 4.6E-18 1.6E-22 133.0 10.2 83 104-186 21-103 (106)
100 2cpf_A RNA binding motif prote 99.7 4.4E-18 1.5E-22 131.0 10.0 83 281-363 4-91 (98)
101 2x1f_A MRNA 3'-END-processing 99.7 9.3E-18 3.2E-22 128.5 11.6 81 282-362 2-84 (96)
102 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3.5E-18 1.2E-22 144.9 10.2 130 235-364 11-156 (165)
103 1x4h_A RNA-binding protein 28; 99.7 5.5E-18 1.9E-22 133.8 10.6 84 103-186 12-101 (111)
104 2cpf_A RNA binding motif prote 99.7 3.3E-18 1.1E-22 131.7 9.0 84 104-187 3-89 (98)
105 2kxn_B Transformer-2 protein h 99.7 4.1E-18 1.4E-22 137.5 9.9 85 102-186 42-126 (129)
106 3s7r_A Heterogeneous nuclear r 99.7 7.2E-18 2.5E-22 126.7 10.3 80 103-183 8-87 (87)
107 2dgp_A Bruno-like 4, RNA bindi 99.7 1.1E-17 3.8E-22 130.8 11.7 84 280-363 11-99 (106)
108 2cpe_A RNA-binding protein EWS 99.7 1.4E-17 4.8E-22 131.8 12.4 84 280-363 13-106 (113)
109 2dhg_A TRNA selenocysteine ass 99.7 5.4E-18 1.8E-22 132.1 9.7 85 280-364 7-94 (104)
110 1oo0_B CG8781-PA, drosophila Y 99.7 1.2E-17 4.1E-22 131.5 11.8 83 280-362 24-108 (110)
111 2e5h_A Zinc finger CCHC-type a 99.7 1.7E-17 5.8E-22 126.6 12.2 79 280-358 14-94 (94)
112 1wex_A Hypothetical protein (r 99.7 1.2E-17 3.9E-22 128.8 11.3 81 280-364 13-95 (104)
113 2err_A Ataxin-2-binding protei 99.7 5.3E-18 1.8E-22 132.9 9.6 81 280-360 27-107 (109)
114 2d9p_A Polyadenylate-binding p 99.7 9E-18 3.1E-22 130.5 10.7 81 104-186 13-93 (103)
115 2ywk_A Putative RNA-binding pr 99.7 6.1E-18 2.1E-22 129.4 9.6 80 280-359 14-94 (95)
116 2cph_A RNA binding motif prote 99.7 7.7E-18 2.6E-22 132.0 10.4 85 104-188 13-99 (107)
117 2hvz_A Splicing factor, argini 99.7 3.4E-18 1.2E-22 132.4 8.2 84 107-195 1-100 (101)
118 1x4c_A Splicing factor, argini 99.7 2.5E-17 8.5E-22 129.0 13.1 78 280-362 13-95 (108)
119 2dng_A Eukaryotic translation 99.7 1.7E-17 5.7E-22 128.9 12.0 81 280-362 13-95 (103)
120 2dnh_A Bruno-like 5, RNA bindi 99.7 1.2E-17 4.2E-22 130.3 11.3 82 104-186 13-97 (105)
121 1s79_A Lupus LA protein; RRM, 99.7 4.1E-18 1.4E-22 131.5 8.3 78 105-184 10-87 (103)
122 2cqc_A Arginine/serine-rich sp 99.7 1.3E-17 4.4E-22 127.6 11.0 80 280-359 13-94 (95)
123 2dgp_A Bruno-like 4, RNA bindi 99.7 5.8E-18 2E-22 132.4 9.2 85 103-187 10-97 (106)
124 1x4e_A RNA binding motif, sing 99.7 2.2E-18 7.6E-23 128.8 6.5 81 104-184 3-83 (85)
125 2fy1_A RNA-binding motif prote 99.7 8.6E-18 2.9E-22 133.2 10.3 83 103-186 4-86 (116)
126 1oo0_B CG8781-PA, drosophila Y 99.7 7.1E-18 2.4E-22 132.8 9.7 83 104-186 24-106 (110)
127 2cpe_A RNA-binding protein EWS 99.7 8.1E-18 2.8E-22 133.2 10.0 84 104-187 13-104 (113)
128 3ucg_A Polyadenylate-binding p 99.7 7.5E-18 2.6E-22 127.2 9.4 80 106-186 6-85 (89)
129 2dgv_A HnRNP M, heterogeneous 99.7 6.4E-18 2.2E-22 128.5 9.0 83 280-362 6-88 (92)
130 2ywk_A Putative RNA-binding pr 99.7 8.8E-18 3E-22 128.5 9.8 81 104-185 14-94 (95)
131 4a8x_A RNA-binding protein wit 99.7 1.2E-17 4E-22 125.9 10.2 80 282-361 4-86 (88)
132 2dnq_A RNA-binding protein 4B; 99.7 1.6E-17 5.3E-22 125.6 10.9 78 280-363 6-83 (90)
133 1sjq_A Polypyrimidine tract-bi 99.7 7.2E-18 2.4E-22 128.7 9.0 79 102-186 12-92 (105)
134 1s79_A Lupus LA protein; RRM, 99.7 6E-18 2.1E-22 130.5 8.7 78 281-359 10-88 (103)
135 2fc9_A NCL protein; structure 99.7 3.3E-17 1.1E-21 126.7 12.8 80 280-362 13-93 (101)
136 2khc_A Testis-specific RNP-typ 99.7 6.3E-18 2.1E-22 135.0 8.9 82 103-184 37-118 (118)
137 2div_A TRNA selenocysteine ass 99.7 6.3E-18 2.2E-22 130.4 8.6 83 104-186 7-94 (99)
138 2dng_A Eukaryotic translation 99.7 1.2E-17 4.1E-22 129.7 10.2 81 104-186 13-93 (103)
139 1p27_B RNA-binding protein 8A; 99.7 1.1E-17 3.7E-22 130.8 10.0 82 280-361 21-104 (106)
140 2ad9_A Polypyrimidine tract-bi 99.7 9.9E-18 3.4E-22 131.4 9.6 81 280-364 29-111 (119)
141 3ulh_A THO complex subunit 4; 99.7 1.4E-17 4.9E-22 130.4 10.5 82 102-184 25-106 (107)
142 3n9u_C Cleavage and polyadenyl 99.7 7.5E-18 2.6E-22 140.5 9.4 82 105-186 54-137 (156)
143 2cpi_A CCR4-NOT transcription 99.7 1.5E-17 5.3E-22 130.8 10.5 82 280-361 13-102 (111)
144 3ns6_A Eukaryotic translation 99.7 3.6E-18 1.2E-22 131.6 6.7 79 282-360 6-93 (100)
145 2ek1_A RNA-binding protein 12; 99.7 4.5E-18 1.5E-22 130.1 7.2 80 105-184 14-93 (95)
146 4a8x_A RNA-binding protein wit 99.7 9.7E-18 3.3E-22 126.3 9.0 82 105-186 3-85 (88)
147 2cqd_A RNA-binding region cont 99.7 1.2E-17 4E-22 132.9 9.9 82 104-186 15-96 (116)
148 1wi8_A EIF-4B, eukaryotic tran 99.7 1.3E-17 4.6E-22 129.7 9.9 80 105-186 14-94 (104)
149 2dgt_A RNA-binding protein 30; 99.7 4.6E-17 1.6E-21 123.5 12.6 77 280-362 8-84 (92)
150 2dhg_A TRNA selenocysteine ass 99.7 1E-17 3.5E-22 130.5 8.9 83 103-186 6-90 (104)
151 3r27_A HnRNP L, heterogeneous 99.7 2.5E-17 8.5E-22 124.3 10.7 78 103-186 18-97 (100)
152 2jrs_A RNA-binding protein 39; 99.7 1.5E-17 5.1E-22 130.0 9.9 82 280-361 24-107 (108)
153 3ex7_B RNA-binding protein 8A; 99.7 1.3E-17 4.5E-22 134.7 9.8 84 103-186 19-102 (126)
154 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.9E-17 6.5E-22 139.1 11.2 84 103-186 36-119 (156)
155 2cq3_A RNA-binding protein 9; 99.7 3.9E-17 1.3E-21 126.9 11.9 82 103-186 12-93 (103)
156 2mss_A Protein (musashi1); RNA 99.7 5.9E-18 2E-22 123.2 6.7 75 108-183 1-75 (75)
157 3ulh_A THO complex subunit 4; 99.7 2E-17 6.9E-22 129.5 10.3 79 280-358 27-106 (107)
158 2cqp_A RNA-binding protein 12; 99.7 7E-18 2.4E-22 129.9 7.5 83 104-186 13-95 (98)
159 1x4b_A Heterogeneous nuclear r 99.7 2.5E-17 8.7E-22 130.9 10.9 82 280-362 25-108 (116)
160 2dgv_A HnRNP M, heterogeneous 99.7 2.2E-17 7.6E-22 125.4 10.2 81 104-186 6-86 (92)
161 1wez_A HnRNP H', FTP-3, hetero 99.7 1E-17 3.4E-22 129.3 8.2 81 102-185 11-91 (102)
162 2dh8_A DAZ-associated protein 99.7 8E-18 2.7E-22 131.3 7.8 83 103-186 13-95 (105)
163 2rs2_A Musashi-1, RNA-binding 99.7 1.6E-17 5.3E-22 130.2 9.2 84 102-186 21-104 (109)
164 1x4g_A Nucleolysin TIAR; struc 99.7 4E-17 1.4E-21 128.1 11.5 80 280-363 23-102 (109)
165 3p5t_L Cleavage and polyadenyl 99.7 3E-18 1E-22 129.4 4.8 80 283-362 2-85 (90)
166 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1E-17 3.5E-22 129.2 7.8 82 103-186 16-98 (100)
167 1uaw_A Mouse-musashi-1; RNP-ty 99.7 5.3E-18 1.8E-22 124.2 5.9 76 107-183 1-76 (77)
168 2dh8_A DAZ-associated protein 99.7 1.8E-17 6.1E-22 129.3 9.2 83 280-363 14-98 (105)
169 1p1t_A Cleavage stimulation fa 99.7 1.2E-17 4E-22 130.2 8.2 81 106-186 8-88 (104)
170 1u6f_A Tcubp1, RNA-binding pro 99.7 2E-17 6.8E-22 136.2 10.0 84 103-186 39-122 (139)
171 2hvz_A Splicing factor, argini 99.7 1.9E-17 6.6E-22 128.1 9.3 78 283-363 1-78 (101)
172 1why_A Hypothetical protein ri 99.7 4.9E-17 1.7E-21 124.7 11.5 77 281-361 16-94 (97)
173 2cpj_A Non-POU domain-containi 99.7 3.8E-17 1.3E-21 125.9 10.9 79 280-362 13-91 (99)
174 2kt5_A RNA and export factor-b 99.7 1.3E-16 4.6E-21 128.3 14.5 84 279-362 32-116 (124)
175 2div_A TRNA selenocysteine ass 99.7 2E-17 6.8E-22 127.6 9.2 82 280-361 7-95 (99)
176 2dgx_A KIAA0430 protein; RRM d 99.7 2.7E-17 9.1E-22 125.8 9.8 80 104-186 7-90 (96)
177 2dgw_A Probable RNA-binding pr 99.7 2.9E-17 1E-21 124.4 10.0 81 103-186 7-87 (91)
178 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.6E-17 1.2E-21 127.0 10.7 81 104-186 13-93 (103)
179 2cpj_A Non-POU domain-containi 99.7 3.2E-17 1.1E-21 126.3 10.2 85 103-193 12-96 (99)
180 1x4d_A Matrin 3; structural ge 99.7 1.4E-17 4.8E-22 127.2 8.1 79 105-189 14-95 (102)
181 2la6_A RNA-binding protein FUS 99.7 2.6E-17 9E-22 126.8 9.7 79 280-358 11-99 (99)
182 2kxn_B Transformer-2 protein h 99.7 1.6E-17 5.6E-22 134.0 8.9 82 280-361 44-127 (129)
183 2do0_A HnRNP M, heterogeneous 99.7 4.5E-17 1.6E-21 129.1 11.2 81 104-185 13-93 (114)
184 3ucg_A Polyadenylate-binding p 99.7 3.2E-17 1.1E-21 123.7 9.9 78 282-360 6-85 (89)
185 2cq4_A RNA binding motif prote 99.7 9.8E-18 3.4E-22 132.9 7.3 82 280-362 23-106 (114)
186 2cqg_A TDP-43, TAR DNA-binding 99.7 9.2E-17 3.1E-21 124.7 12.7 82 280-363 13-96 (103)
187 1wg5_A Heterogeneous nuclear r 99.7 6.9E-17 2.4E-21 125.4 11.9 81 280-361 13-95 (104)
188 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.2E-17 4E-22 128.9 7.3 80 280-361 17-99 (100)
189 2cpy_A RNA-binding protein 12; 99.7 7.7E-18 2.6E-22 133.2 6.4 81 280-361 13-95 (114)
190 1wez_A HnRNP H', FTP-3, hetero 99.7 1.6E-17 5.5E-22 128.1 8.0 79 280-360 13-92 (102)
191 2dgw_A Probable RNA-binding pr 99.7 5.3E-17 1.8E-21 122.9 10.8 80 280-361 8-88 (91)
192 2khc_A Testis-specific RNP-typ 99.7 4.2E-17 1.4E-21 130.1 10.7 79 280-358 38-118 (118)
193 1x4a_A Splicing factor, argini 99.7 5.4E-17 1.8E-21 127.5 11.2 81 103-186 19-99 (109)
194 1wf1_A RNA-binding protein RAL 99.7 6.7E-17 2.3E-21 127.1 11.7 96 258-362 6-102 (110)
195 2cpd_A Apobec-1 stimulating pr 99.7 1.5E-16 5.1E-21 122.5 13.5 77 280-362 13-91 (99)
196 1wg5_A Heterogeneous nuclear r 99.7 3.2E-17 1.1E-21 127.3 9.6 81 104-186 13-94 (104)
197 2kt5_A RNA and export factor-b 99.7 5.2E-17 1.8E-21 130.8 11.0 84 103-187 32-115 (124)
198 3s7r_A Heterogeneous nuclear r 99.7 5.4E-17 1.8E-21 121.8 10.3 77 280-357 9-87 (87)
199 1x4f_A Matrin 3; structural ge 99.7 2.3E-17 7.9E-22 127.8 8.4 80 280-363 23-105 (112)
200 2rs2_A Musashi-1, RNA-binding 99.7 7.2E-17 2.5E-21 126.3 11.3 82 280-362 23-106 (109)
201 2cqg_A TDP-43, TAR DNA-binding 99.7 5.8E-17 2E-21 125.9 10.7 82 104-187 13-94 (103)
202 2cq4_A RNA binding motif prote 99.7 2.3E-17 7.9E-22 130.7 8.6 80 106-186 25-104 (114)
203 2jvr_A Nucleolar protein 3; RN 99.7 4.8E-17 1.6E-21 126.6 10.1 77 282-360 28-105 (111)
204 2dnp_A RNA-binding protein 14; 99.7 8.8E-17 3E-21 121.4 11.4 77 280-362 7-83 (90)
205 2cpy_A RNA-binding protein 12; 99.7 1.3E-17 4.3E-22 132.0 6.9 82 103-186 12-94 (114)
206 2cpi_A CCR4-NOT transcription 99.7 2.7E-17 9.1E-22 129.5 8.7 85 105-189 14-104 (111)
207 2dnn_A RNA-binding protein 12; 99.7 5.4E-17 1.8E-21 126.1 10.2 78 281-360 15-93 (109)
208 2hgl_A HNRPF protein, heteroge 99.7 1.8E-17 6.1E-22 134.2 7.7 81 103-185 41-124 (136)
209 2nlw_A Eukaryotic translation 99.7 5.4E-17 1.9E-21 126.3 10.2 81 281-361 14-101 (105)
210 2m2b_A RNA-binding protein 10; 99.7 1.7E-17 5.9E-22 134.7 7.5 82 105-187 22-109 (131)
211 1x5o_A RNA binding motif, sing 99.7 8.9E-17 3E-21 127.4 11.4 81 105-186 24-112 (114)
212 2dis_A Unnamed protein product 99.7 1.2E-16 4.2E-21 125.5 11.9 83 281-363 7-95 (109)
213 2cpx_A Hypothetical protein FL 99.7 9.7E-17 3.3E-21 127.4 11.4 81 280-363 23-108 (115)
214 2dis_A Unnamed protein product 99.7 3.6E-17 1.2E-21 128.5 8.8 85 103-187 5-93 (109)
215 2mss_A Protein (musashi1); RNA 99.7 2.5E-17 8.6E-22 119.8 7.2 73 284-357 1-75 (75)
216 1x4b_A Heterogeneous nuclear r 99.7 3.8E-17 1.3E-21 129.9 8.9 81 106-187 27-107 (116)
217 2db1_A Heterogeneous nuclear r 99.7 2.5E-17 8.5E-22 131.0 7.8 79 104-184 15-96 (118)
218 2ytc_A PRE-mRNA-splicing facto 99.7 6.4E-17 2.2E-21 120.8 9.6 75 280-358 10-85 (85)
219 2ad9_A Polypyrimidine tract-bi 99.7 6.3E-17 2.2E-21 126.8 9.9 78 103-186 28-107 (119)
220 1p1t_A Cleavage stimulation fa 99.7 2E-17 6.9E-22 128.8 7.1 84 280-363 6-91 (104)
221 2m2b_A RNA-binding protein 10; 99.7 3.6E-17 1.2E-21 132.9 8.7 82 280-362 21-110 (131)
222 2cq1_A PTB-like protein L; RRM 99.7 1.3E-16 4.4E-21 122.1 11.2 77 104-186 13-91 (101)
223 2err_A Ataxin-2-binding protei 99.7 6.1E-17 2.1E-21 126.9 9.5 82 103-186 26-107 (109)
224 2lea_A Serine/arginine-rich sp 99.7 1.5E-17 5.1E-22 135.5 6.1 82 105-186 46-127 (135)
225 2nlw_A Eukaryotic translation 99.7 3E-17 1E-21 127.7 7.6 80 105-186 14-100 (105)
226 2cqp_A RNA-binding protein 12; 99.7 3.5E-17 1.2E-21 125.9 7.8 81 280-360 13-95 (98)
227 3n9u_C Cleavage and polyadenyl 99.7 5.7E-17 1.9E-21 135.2 9.6 80 281-360 54-137 (156)
228 2ki2_A SS-DNA binding protein 99.7 6.8E-18 2.3E-22 127.7 3.7 80 107-187 2-81 (90)
229 2a3j_A U1 small nuclear ribonu 99.7 7.9E-17 2.7E-21 128.8 10.1 81 280-362 27-112 (127)
230 2dnn_A RNA-binding protein 12; 99.7 5.7E-17 1.9E-21 126.0 8.9 77 106-185 16-92 (109)
231 2hgn_A Heterogeneous nuclear r 99.7 1.2E-17 4E-22 135.7 5.2 80 280-361 44-124 (139)
232 2krb_A Eukaryotic translation 99.7 1.8E-17 6.3E-22 122.4 5.8 73 106-180 1-80 (81)
233 1whx_A Hypothetical protein ri 99.7 6.6E-17 2.3E-21 126.9 9.3 77 281-361 9-85 (111)
234 1x4f_A Matrin 3; structural ge 99.7 3.6E-17 1.2E-21 126.7 7.6 84 103-192 22-108 (112)
235 2db1_A Heterogeneous nuclear r 99.7 6E-17 2E-21 128.7 8.9 81 280-361 15-99 (118)
236 2ek1_A RNA-binding protein 12; 99.7 2.1E-17 7.3E-22 126.3 6.1 79 281-359 14-94 (95)
237 2kvi_A Nuclear polyadenylated 99.7 5.1E-17 1.8E-21 124.3 8.1 77 280-362 8-85 (96)
238 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 7.7E-17 2.6E-21 133.0 9.8 81 103-183 60-140 (140)
239 2jvo_A Nucleolar protein 3; nu 99.7 8.7E-17 3E-21 125.5 9.5 77 280-362 29-105 (108)
240 2jwn_A Embryonic polyadenylate 99.7 5.9E-17 2E-21 130.5 8.7 80 106-186 36-115 (124)
241 1x5o_A RNA binding motif, sing 99.7 1.1E-16 3.8E-21 126.8 10.1 81 280-360 23-112 (114)
242 2xnq_A Nuclear polyadenylated 99.7 2E-16 6.9E-21 120.9 11.2 75 280-360 20-95 (97)
243 2la4_A Nuclear and cytoplasmic 99.7 5.8E-17 2E-21 125.4 8.2 76 281-360 26-101 (101)
244 2fc8_A NCL protein; structure 99.7 1.6E-16 5.5E-21 123.2 10.7 80 280-362 13-94 (102)
245 2fc9_A NCL protein; structure 99.7 1.2E-16 4E-21 123.7 9.8 80 103-186 12-91 (101)
246 1wel_A RNA-binding protein 12; 99.7 2E-17 6.9E-22 133.0 5.7 81 104-185 23-103 (124)
247 2krb_A Eukaryotic translation 99.7 3.4E-17 1.2E-21 121.0 6.4 73 283-355 2-81 (81)
248 1wg1_A KIAA1579 protein, homol 99.7 1E-16 3.5E-21 120.4 9.1 84 104-194 3-86 (88)
249 2hgl_A HNRPF protein, heteroge 99.7 3.4E-17 1.2E-21 132.5 6.9 80 280-360 42-125 (136)
250 2cqh_A IGF-II mRNA-binding pro 99.7 6E-17 2.1E-21 123.2 7.8 78 280-362 6-85 (93)
251 1wex_A Hypothetical protein (r 99.7 1.5E-16 5.3E-21 122.5 10.1 77 104-186 13-91 (104)
252 2dnq_A RNA-binding protein 4B; 99.7 1.9E-16 6.6E-21 119.5 10.5 77 103-187 5-81 (90)
253 2la4_A Nuclear and cytoplasmic 99.7 1.3E-16 4.3E-21 123.5 9.6 82 98-185 19-100 (101)
254 2jvr_A Nucleolar protein 3; RN 99.7 7E-17 2.4E-21 125.7 7.9 81 101-185 23-104 (111)
255 2a3j_A U1 small nuclear ribonu 99.7 1.5E-16 5E-21 127.3 9.9 81 104-187 27-111 (127)
256 1iqt_A AUF1, heterogeneous nuc 99.7 2.7E-17 9.3E-22 119.7 5.2 75 108-183 1-75 (75)
257 2e5g_A U6 snRNA-specific termi 99.7 1.8E-16 6.2E-21 120.7 9.9 78 281-362 7-84 (94)
258 2jwn_A Embryonic polyadenylate 99.7 1.6E-16 5.5E-21 127.9 10.1 80 281-361 35-116 (124)
259 2lmi_A GRSF-1, G-rich sequence 99.7 3.3E-17 1.1E-21 128.0 5.9 81 103-185 8-91 (107)
260 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4E-17 1.4E-21 119.5 5.9 74 283-357 1-76 (77)
261 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3.4E-16 1.2E-20 129.1 12.1 79 279-357 60-140 (140)
262 2ki2_A SS-DNA binding protein 99.7 2.5E-17 8.5E-22 124.6 4.8 79 283-362 2-82 (90)
263 2fc8_A NCL protein; structure 99.7 1.9E-16 6.5E-21 122.8 9.9 82 103-187 12-93 (102)
264 1x4g_A Nucleolysin TIAR; struc 99.7 2.2E-16 7.7E-21 123.8 10.4 80 102-187 21-100 (109)
265 1x4c_A Splicing factor, argini 99.7 2.4E-16 8.2E-21 123.3 10.5 77 104-187 13-94 (108)
266 2e44_A Insulin-like growth fac 99.7 3E-16 1E-20 120.1 10.8 79 281-361 14-93 (96)
267 2cq2_A Hypothetical protein LO 99.7 2.4E-16 8.3E-21 122.0 10.2 77 281-361 24-107 (114)
268 1x5p_A Negative elongation fac 99.7 8.2E-16 2.8E-20 117.8 13.1 77 280-362 13-89 (97)
269 1why_A Hypothetical protein ri 99.7 2.5E-16 8.5E-21 120.8 10.1 78 103-186 14-93 (97)
270 2e5j_A Methenyltetrahydrofolat 99.7 1.6E-16 5.5E-21 121.8 9.0 79 280-361 17-95 (97)
271 1nu4_A U1A RNA binding domain; 99.7 1.3E-16 4.3E-21 122.5 8.5 81 280-362 6-91 (97)
272 1x4e_A RNA binding motif, sing 99.7 2E-17 6.8E-22 123.6 3.8 78 281-358 4-83 (85)
273 3beg_B Splicing factor, argini 99.7 1.8E-16 6.3E-21 125.3 9.5 75 281-360 15-94 (115)
274 2diu_A KIAA0430 protein; struc 99.7 3.4E-16 1.2E-20 114.3 10.0 80 103-192 6-90 (96)
275 1fjc_A Nucleolin RBD2, protein 99.7 1.5E-16 5.1E-21 121.8 8.6 79 280-362 14-93 (96)
276 2lmi_A GRSF-1, G-rich sequence 99.7 5.4E-17 1.8E-21 126.8 5.9 81 280-361 9-93 (107)
277 3lqv_A PRE-mRNA branch site pr 99.7 2.1E-16 7.3E-21 125.4 9.5 81 281-362 7-87 (115)
278 1fj7_A Nucleolin RBD1, protein 99.7 5.3E-17 1.8E-21 125.6 5.5 81 280-362 15-97 (101)
279 2lcw_A RNA-binding protein FUS 99.5 5.9E-18 2E-22 134.6 0.0 82 281-362 6-97 (116)
280 1fj7_A Nucleolin RBD1, protein 99.7 1.9E-17 6.3E-22 128.2 2.8 80 105-186 16-95 (101)
281 2dha_A FLJ20171 protein; RRM d 99.7 7E-17 2.4E-21 128.2 6.0 80 103-184 20-103 (123)
282 2hgm_A HNRPF protein, heteroge 99.7 1.3E-16 4.4E-21 126.9 7.4 80 103-185 39-120 (126)
283 2hgn_A Heterogeneous nuclear r 99.7 4.3E-17 1.5E-21 132.3 4.8 81 103-186 43-123 (139)
284 2xnq_A Nuclear polyadenylated 99.7 5.6E-16 1.9E-20 118.4 10.8 79 100-186 16-95 (97)
285 2f3j_A RNA and export factor b 99.7 2.3E-16 8E-21 134.5 9.5 85 102-187 84-168 (177)
286 1nu4_A U1A RNA binding domain; 99.7 2E-16 7E-21 121.4 8.2 82 103-187 5-90 (97)
287 2ytc_A PRE-mRNA-splicing facto 99.7 3.4E-16 1.2E-20 116.9 9.1 75 104-184 10-85 (85)
288 2jvo_A Nucleolar protein 3; nu 99.7 5.2E-16 1.8E-20 121.1 10.3 76 103-186 28-103 (108)
289 1iqt_A AUF1, heterogeneous nuc 99.7 1.1E-16 3.7E-21 116.5 6.0 73 284-357 1-75 (75)
290 2cpx_A Hypothetical protein FL 99.7 3.7E-17 1.3E-21 129.9 3.6 79 104-186 23-105 (115)
291 2lcw_A RNA-binding protein FUS 99.5 9.9E-18 3.4E-22 133.2 0.0 83 104-186 5-95 (116)
292 2e5j_A Methenyltetrahydrofolat 99.6 4E-16 1.4E-20 119.6 8.9 78 104-186 17-94 (97)
293 2dha_A FLJ20171 protein; RRM d 99.6 1.1E-16 3.6E-21 127.2 5.8 79 281-360 22-105 (123)
294 3zzy_A Polypyrimidine tract-bi 99.6 5.6E-16 1.9E-20 122.8 10.0 79 281-362 27-108 (130)
295 2dgt_A RNA-binding protein 30; 99.6 6.1E-16 2.1E-20 117.3 9.8 77 103-187 7-83 (92)
296 1sjr_A Polypyrimidine tract-bi 99.6 7.5E-16 2.6E-20 126.9 10.9 80 281-362 45-126 (164)
297 2hgm_A HNRPF protein, heteroge 99.6 1.9E-16 6.5E-21 125.9 7.0 79 280-360 40-121 (126)
298 2j8a_A Histone-lysine N-methyl 99.6 2E-16 6.9E-21 122.4 6.9 79 107-185 3-95 (136)
299 1whx_A Hypothetical protein ri 99.6 2.6E-16 8.7E-21 123.6 7.5 75 105-185 9-83 (111)
300 2dnp_A RNA-binding protein 14; 99.6 6.6E-16 2.3E-20 116.6 9.4 76 103-186 6-81 (90)
301 2e5i_A Heterogeneous nuclear r 99.6 1.3E-15 4.4E-20 120.5 11.2 78 281-362 24-104 (124)
302 2diu_A KIAA0430 protein; struc 99.6 5.6E-16 1.9E-20 113.2 8.2 72 284-363 11-87 (96)
303 2kvi_A Nuclear polyadenylated 99.6 4.8E-16 1.6E-20 118.8 8.3 76 103-186 7-83 (96)
304 1wel_A RNA-binding protein 12; 99.6 1.8E-16 6.2E-21 127.4 6.1 81 280-361 23-105 (124)
305 2dgu_A Heterogeneous nuclear r 99.6 7.7E-16 2.6E-20 119.4 9.4 75 104-186 9-83 (103)
306 2f3j_A RNA and export factor b 99.6 6E-16 2.1E-20 132.0 9.5 82 280-361 86-168 (177)
307 2dnl_A Cytoplasmic polyadenyla 99.6 9.2E-16 3.1E-20 121.2 9.9 78 104-184 6-86 (114)
308 1fjc_A Nucleolin RBD2, protein 99.6 2.6E-16 8.7E-21 120.5 6.4 77 105-186 15-91 (96)
309 3d2w_A TAR DNA-binding protein 99.6 1.5E-15 5.3E-20 113.8 10.5 76 280-362 9-86 (89)
310 2cpd_A Apobec-1 stimulating pr 99.6 1.6E-15 5.3E-20 116.8 10.7 75 105-187 14-90 (99)
311 2xs2_A Deleted in azoospermia- 99.6 1.4E-16 4.9E-21 123.4 4.7 79 105-186 8-86 (102)
312 2xs2_A Deleted in azoospermia- 99.6 3.3E-16 1.1E-20 121.3 6.7 82 280-363 7-89 (102)
313 1wg1_A KIAA1579 protein, homol 99.6 7.3E-16 2.5E-20 115.7 7.9 75 281-360 4-78 (88)
314 1wf0_A TDP-43, TAR DNA-binding 99.6 8.4E-16 2.9E-20 115.5 8.1 78 281-363 4-81 (88)
315 2e5g_A U6 snRNA-specific termi 99.6 1.4E-15 4.8E-20 115.7 9.1 77 104-186 6-82 (94)
316 2cqh_A IGF-II mRNA-binding pro 99.6 6.7E-16 2.3E-20 117.4 7.1 77 103-186 5-83 (93)
317 2e44_A Insulin-like growth fac 99.6 9.3E-16 3.2E-20 117.4 8.0 78 105-186 14-92 (96)
318 2i2y_A Fusion protein consists 99.6 1.4E-15 4.7E-20 126.8 9.2 79 103-186 70-148 (150)
319 3egn_A RNA-binding protein 40; 99.6 3.3E-16 1.1E-20 129.4 5.4 83 280-362 43-132 (143)
320 1wf1_A RNA-binding protein RAL 99.6 1.7E-15 5.8E-20 119.0 9.0 74 105-186 26-100 (110)
321 2voo_A Lupus LA protein; RNA-b 99.6 4.9E-15 1.7E-19 128.3 12.1 123 240-363 64-190 (193)
322 3pgw_S U1-70K; protein-RNA com 99.6 1.9E-15 6.7E-20 147.4 10.7 82 105-186 101-182 (437)
323 3md3_A Nuclear and cytoplasmic 99.6 4.2E-15 1.4E-19 126.4 11.3 81 104-184 85-165 (166)
324 2hzc_A Splicing factor U2AF 65 99.6 3.4E-15 1.2E-19 111.9 9.4 72 280-356 4-86 (87)
325 4f02_A Polyadenylate-binding p 99.6 3E-15 1E-19 132.7 10.6 81 281-361 14-96 (213)
326 3egn_A RNA-binding protein 40; 99.6 3.7E-16 1.3E-20 129.1 4.1 84 103-186 42-130 (143)
327 3beg_B Splicing factor, argini 99.6 1.7E-15 5.7E-20 119.8 7.6 74 105-185 15-93 (115)
328 1x5p_A Negative elongation fac 99.6 5.9E-15 2E-19 113.0 10.5 76 104-187 13-88 (97)
329 2pe8_A Splicing factor 45; RRM 99.6 6E-15 2.1E-19 113.8 9.8 80 280-359 6-93 (105)
330 2cq2_A Hypothetical protein LO 99.6 3.3E-15 1.1E-19 115.6 8.3 77 102-184 21-104 (114)
331 3zzy_A Polypyrimidine tract-bi 99.6 5.4E-15 1.9E-19 117.2 9.7 79 104-187 26-107 (130)
332 2pe8_A Splicing factor 45; RRM 99.6 8.4E-15 2.9E-19 113.0 10.5 82 104-185 6-93 (105)
333 1sjr_A Polypyrimidine tract-bi 99.6 5.2E-15 1.8E-19 121.9 9.8 79 104-186 44-124 (164)
334 3tyt_A Heterogeneous nuclear r 99.6 5.9E-15 2E-19 129.3 10.8 78 281-361 3-81 (205)
335 2j8a_A Histone-lysine N-methyl 99.6 3.1E-15 1.1E-19 115.8 7.6 76 283-358 3-94 (136)
336 3d2w_A TAR DNA-binding protein 99.6 6.8E-15 2.3E-19 110.3 9.1 76 102-186 7-84 (89)
337 2qfj_A FBP-interacting repress 99.6 8E-15 2.7E-19 130.5 11.2 83 104-186 123-205 (216)
338 2g4b_A Splicing factor U2AF 65 99.6 5.6E-15 1.9E-19 126.4 9.8 79 105-183 93-171 (172)
339 1b7f_A Protein (SXL-lethal pro 99.6 1E-14 3.5E-19 124.3 11.0 80 282-361 3-84 (168)
340 2bz2_A Negative elongation fac 99.6 6.2E-15 2.1E-19 117.3 8.6 77 280-362 37-113 (121)
341 1fxl_A Paraneoplastic encephal 99.6 1E-14 3.6E-19 124.0 10.7 80 282-361 2-83 (167)
342 2hzc_A Splicing factor U2AF 65 99.6 4.7E-15 1.6E-19 111.2 7.5 71 105-182 5-86 (87)
343 2yh0_A Splicing factor U2AF 65 99.6 9.7E-15 3.3E-19 128.0 10.1 84 103-186 111-194 (198)
344 2e5i_A Heterogeneous nuclear r 99.6 1.6E-14 5.5E-19 114.2 10.0 75 107-187 26-103 (124)
345 2cjk_A Nuclear polyadenylated 99.6 4.6E-15 1.6E-19 126.3 7.0 80 106-186 87-166 (167)
346 2dit_A HIV TAT specific factor 99.5 5.6E-14 1.9E-18 110.4 12.3 81 280-362 13-104 (112)
347 2dnl_A Cytoplasmic polyadenyla 99.5 3.9E-14 1.3E-18 111.8 11.0 76 281-359 7-87 (114)
348 1l3k_A Heterogeneous nuclear r 99.5 2E-14 6.7E-19 125.9 10.2 83 104-187 102-184 (196)
349 3pgw_A U1-A; protein-RNA compl 99.5 2E-13 6.8E-18 126.7 17.5 80 280-361 7-91 (282)
350 2bz2_A Negative elongation fac 99.5 2.7E-14 9.2E-19 113.6 9.6 77 102-186 35-111 (121)
351 1wf0_A TDP-43, TAR DNA-binding 99.5 7.4E-15 2.5E-19 110.2 5.4 76 105-187 4-79 (88)
352 3u1l_A PRE-mRNA-splicing facto 99.5 1.1E-14 3.9E-19 128.4 7.1 79 280-362 132-231 (240)
353 3v4m_A Splicing factor U2AF 65 99.5 4.2E-14 1.4E-18 109.1 9.4 79 281-359 4-96 (105)
354 2voo_A Lupus LA protein; RNA-b 99.5 3.7E-14 1.3E-18 122.8 9.7 78 106-185 109-186 (193)
355 3nmr_A Cugbp ELAV-like family 99.5 5.3E-14 1.8E-18 120.7 10.4 79 105-184 94-175 (175)
356 2adc_A Polypyrimidine tract-bi 99.5 7.4E-14 2.5E-18 125.2 10.5 80 279-361 31-111 (229)
357 2dit_A HIV TAT specific factor 99.5 1.4E-13 4.7E-18 108.2 10.3 85 101-189 10-105 (112)
358 3u1l_A PRE-mRNA-splicing facto 99.5 7.7E-14 2.6E-18 123.1 8.8 78 103-186 131-229 (240)
359 1fje_B Nucleolin RBD12, protei 99.5 8.7E-14 3E-18 119.3 8.8 77 105-186 98-174 (175)
360 1jmt_A Splicing factor U2AF 35 99.5 2.4E-14 8.1E-19 110.4 4.1 71 287-357 20-103 (104)
361 3v4m_A Splicing factor U2AF 65 99.4 1.9E-13 6.4E-18 105.5 8.2 81 105-185 4-96 (105)
362 1qm9_A Polypyrimidine tract-bi 99.4 1.3E-13 4.4E-18 120.8 8.1 77 282-361 3-80 (198)
363 3sde_A Paraspeckle component 1 99.4 3.1E-13 1.1E-17 123.6 10.9 76 280-359 20-95 (261)
364 3ue2_A Poly(U)-binding-splicin 99.4 2.1E-13 7.1E-18 107.2 7.3 79 281-359 19-108 (118)
365 2d9o_A DNAJ (HSP40) homolog, s 99.4 9.2E-13 3.1E-17 100.0 10.6 66 292-362 27-92 (100)
366 3ue2_A Poly(U)-binding-splicin 99.4 5.4E-13 1.8E-17 104.8 8.3 82 104-185 18-108 (118)
367 1jmt_A Splicing factor U2AF 35 99.4 1.3E-13 4.6E-18 106.1 3.7 72 111-183 20-103 (104)
368 3s6e_A RNA-binding protein 39; 99.4 1.9E-12 6.6E-17 100.9 9.9 76 281-358 6-91 (114)
369 3tht_A Alkylated DNA repair pr 99.3 3.5E-12 1.2E-16 118.9 9.9 75 280-358 16-97 (345)
370 2d9o_A DNAJ (HSP40) homolog, s 99.3 2.8E-11 9.6E-16 91.8 10.4 74 106-186 10-90 (100)
371 3s6e_A RNA-binding protein 39; 99.2 3.6E-11 1.2E-15 93.6 9.6 78 103-184 4-91 (114)
372 2dnr_A Synaptojanin-1; RRM dom 99.2 4.9E-11 1.7E-15 86.4 8.8 73 281-360 6-86 (91)
373 3tht_A Alkylated DNA repair pr 99.2 2.5E-11 8.4E-16 113.2 8.4 77 102-184 14-97 (345)
374 1owx_A Lupus LA protein, SS-B, 99.2 9.4E-11 3.2E-15 91.1 10.0 75 280-358 16-94 (121)
375 1owx_A Lupus LA protein, SS-B, 99.2 1.6E-10 5.5E-15 89.8 9.4 76 102-183 14-93 (121)
376 2dnr_A Synaptojanin-1; RRM dom 99.1 2.5E-10 8.5E-15 82.7 7.5 74 104-186 5-86 (91)
377 1ufw_A Synaptojanin 2; RNP dom 99.0 6.3E-10 2.2E-14 80.9 6.8 73 280-359 13-94 (95)
378 1ufw_A Synaptojanin 2; RNP dom 98.9 1.2E-09 4.2E-14 79.4 4.6 75 101-184 10-93 (95)
379 2l9w_A U4/U6 snRNA-associated- 98.8 2.5E-08 8.5E-13 73.7 8.2 71 282-356 21-96 (117)
380 3dxb_A Thioredoxin N-terminall 98.8 7.3E-09 2.5E-13 92.0 6.1 66 293-358 140-211 (222)
381 3dxb_A Thioredoxin N-terminall 98.7 3.2E-08 1.1E-12 87.8 8.0 81 104-184 122-211 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.5 7.1E-07 2.4E-11 66.0 9.2 72 105-182 20-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.4 3.4E-06 1.1E-10 62.1 10.5 86 105-199 7-99 (104)
384 1wey_A Calcipressin 1; structu 98.0 3E-05 1E-09 57.4 8.1 76 282-361 5-85 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.9 0.00026 9E-09 52.1 11.4 74 282-362 8-86 (104)
386 1wey_A Calcipressin 1; structu 97.7 4.3E-05 1.5E-09 56.6 5.5 73 106-184 5-82 (104)
387 1uw4_A UPF3X; nonsense mediate 97.7 0.00012 4E-09 53.5 7.5 69 107-175 2-72 (91)
388 1uw4_A UPF3X; nonsense mediate 97.6 0.00041 1.4E-08 50.5 8.7 76 283-358 2-86 (91)
389 1wwh_A Nucleoporin 35, nucleop 97.5 0.00048 1.7E-08 52.6 8.6 73 280-358 22-95 (119)
390 1whv_A Poly(A)-specific ribonu 97.5 0.00028 9.6E-09 51.2 6.5 58 103-169 13-70 (100)
391 1wwh_A Nucleoporin 35, nucleop 97.2 0.0014 4.9E-08 50.0 7.8 72 105-184 23-95 (119)
392 3ctr_A Poly(A)-specific ribonu 97.0 0.00065 2.2E-08 49.5 4.4 54 107-169 7-60 (101)
393 2l08_A Regulator of nonsense t 97.0 0.0025 8.6E-08 46.6 7.0 76 282-357 9-93 (97)
394 2l08_A Regulator of nonsense t 97.0 0.00089 3E-08 49.0 4.5 69 106-174 9-79 (97)
395 3p3d_A Nucleoporin 53; structu 96.9 0.00086 3E-08 51.9 4.5 75 283-359 8-98 (132)
396 1whv_A Poly(A)-specific ribonu 96.9 0.0022 7.5E-08 46.6 6.1 54 283-343 17-70 (100)
397 3ctr_A Poly(A)-specific ribonu 96.7 0.0022 7.6E-08 46.7 4.8 54 283-343 7-60 (101)
398 3p3d_A Nucleoporin 53; structu 95.9 0.008 2.7E-07 46.5 4.3 78 105-184 6-97 (132)
399 3pq1_A Poly(A) RNA polymerase; 95.7 0.0052 1.8E-07 59.3 3.4 54 283-340 54-107 (464)
400 3pq1_A Poly(A) RNA polymerase; 95.3 0.0081 2.8E-07 58.0 3.2 55 106-166 53-107 (464)
401 3d45_A Poly(A)-specific ribonu 87.6 1.4 4.8E-05 43.4 8.0 56 106-170 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 85.5 2.1 7.2E-05 42.1 8.0 56 282-344 440-495 (507)
403 4fdd_B RNA-binding protein FUS 76.4 2.2 7.4E-05 22.6 2.3 11 472-482 19-29 (29)
404 2pk2_A Cyclin-T1, protein TAT; 74.3 0.64 2.2E-05 43.6 0.0 13 293-305 228-240 (358)
405 4eyt_A Telomerase associated p 72.1 23 0.00077 24.8 8.4 59 104-170 10-68 (129)
406 2g0c_A ATP-dependent RNA helic 68.7 9.1 0.00031 26.2 5.0 59 293-358 12-75 (76)
407 2g0c_A ATP-dependent RNA helic 63.1 21 0.00072 24.3 6.0 59 117-184 12-75 (76)
408 4e8u_A Putative uncharacterize 56.7 12 0.00043 30.3 4.3 50 283-333 13-73 (172)
409 3j21_T 50S ribosomal protein L 54.8 26 0.0009 24.8 5.2 57 284-341 24-82 (86)
410 4eyt_A Telomerase associated p 50.3 62 0.0021 22.6 8.0 69 281-355 11-86 (129)
411 3tj1_A RNA polymerase I-specif 37.3 7.3 0.00025 39.1 0.1 11 157-167 414-424 (649)
412 3l9o_A ATP-dependent RNA helic 37.2 7.3 0.00025 42.5 0.1 20 149-168 228-247 (1108)
413 4e8u_A Putative uncharacterize 37.0 60 0.002 26.3 5.4 55 108-165 14-80 (172)
414 1vq8_S 50S ribosomal protein L 35.2 49 0.0017 23.3 4.1 55 284-339 23-79 (85)
415 1b34_A Protein (small nuclear 35.1 8 0.00027 29.5 0.0 8 324-331 65-72 (119)
416 4a17_R RPL23A, 60S ribosomal p 31.6 64 0.0022 25.4 4.6 57 284-341 88-146 (150)
417 3u5e_X 60S ribosomal protein L 30.8 64 0.0022 25.2 4.4 56 284-340 80-137 (142)
418 3lpe_A Putative transcription 29.7 1.5E+02 0.0051 21.0 7.3 52 133-208 40-91 (92)
419 3fry_A Probable copper-exporti 26.3 1.4E+02 0.0047 19.4 5.5 54 283-341 7-60 (73)
420 3iz5_X 60S ribosomal protein L 23.6 64 0.0022 25.5 3.3 56 284-340 90-147 (152)
421 2zkr_s 60S ribosomal protein L 23.1 1.1E+02 0.0037 24.3 4.5 56 284-340 94-151 (156)
422 4bby_A Alkyldihydroxyacetoneph 22.2 56 0.0019 33.2 3.6 45 298-342 359-408 (658)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=7e-45 Score=341.80 Aligned_cols=252 Identities=19% Similarity=0.320 Sum_probs=214.7
Q ss_pred hcCCCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEE
Q 011574 99 LLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (482)
Q Consensus 99 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l 178 (482)
....+...++|||+|||+++|+++|+++|+.||.|..|+|+.+..+ ++|||||+|.+.++|.+|| .+++..|.|+.|
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 110 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAI-TKTHKVVGQNEI 110 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHH-TTTTCEETTEEC
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEE
Confidence 3445567899999999999999999999999999999999998753 5899999999999999999 589999999999
Q ss_pred EEeecCCcceeeeCCCCCCCCHHHHHHHHhhhC-CcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhcccccc
Q 011574 179 RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL 257 (482)
Q Consensus 179 ~v~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G-~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 257 (482)
.|.++. .++|||+|||..+++++|+++|+.|| . |..+.++.+.. +.+++||||.|.+.++|.+|+..|++. .+
T Consensus 111 ~v~~~~-~~~l~v~nlp~~~t~~~l~~~f~~~G~~-i~~v~i~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~--~~ 184 (292)
T 2ghp_A 111 IVSHLT-ECTLWMTNFPPSYTQRNIRDLLQDINVV-ALSIRLPSLRF--NTSRRFAYIDVTSKEDARYCVEKLNGL--KI 184 (292)
T ss_dssp EEEECC-SCEEEEECCCTTCCHHHHHHHHHHTTCC-CCEEECC---------CCEEEEECSSHHHHHHHHHHHTTC--EE
T ss_pred EEEECC-CCEEEEECCCCCCCHHHHHHHHHHhCCC-eEEEEEEeCCC--CCcceEEEEEECCHHHHHHHHHHhCCC--Ee
Confidence 999874 78999999999999999999999999 7 99999998743 778999999999999999999999875 56
Q ss_pred CCCCCeeeecCCCCCCCcc-ccccCcceEEEecCCCC-CCHHHHHHHHhcccceeEEEcCCCCC--CC-CcEEEEEeCCH
Q 011574 258 DGNTPTISWADPKSTPDHS-AAASQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKS--GK-RDFGFIHYAER 332 (482)
Q Consensus 258 ~~~~~~v~~~~~~~~~~~~-~~~~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~--~~-kg~afV~f~~~ 332 (482)
.++.|.|.|+.+....... ......++|||+|||.. +|+++|+++|++||.|..|.|+.+.. +. +|||||+|.+.
T Consensus 185 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 185 EGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp TTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 8899999999887655444 34456789999999999 99999999999999999999999876 55 99999999999
Q ss_pred HHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 333 e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
++|.+|+ .||++.|.|++|.|.|+.++
T Consensus 265 ~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 265 DSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999999 99999999999999999875
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.2e-44 Score=338.77 Aligned_cols=247 Identities=21% Similarity=0.391 Sum_probs=226.5
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 102 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
.....++|||+|||+++|+++|+++|+.|| |..|.+ ++++|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 90 (284)
T 3smz_A 18 QFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQ 90 (284)
T ss_dssp HHHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEE
Confidence 334679999999999999999999999999 999988 4568899999999999999999999999999999999
Q ss_pred ecCCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCC
Q 011574 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (482)
Q Consensus 182 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (482)
++...++|||+|||..+++++|+++|+.||. |..+.++.++ .++.++|||||.|.+.++|..|+..+++. .+.++.
T Consensus 91 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~ 166 (284)
T 3smz_A 91 LQPTDALLCVANLPPSLTQQQFEELVRPFGS-LERCFLVYSE-RTGQSKGYGFAEYMKKDSAARAKSDLLGK--PLGPRT 166 (284)
T ss_dssp ECCCSCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEE
T ss_pred ecCCCCEEEEcCCCCcCCHHHHHHHHHhcCC-eeEEEEEeeC-CCCccceEEEEEECCHHHHHHHHHHhCCC--EeCCcE
Confidence 9999999999999999999999999999998 9999999883 67889999999999999999999999875 668999
Q ss_pred CeeeecCCCCCCCccccccCcceEEEecCCCCC-CHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHH
Q 011574 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNT-STEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAV 339 (482)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~-t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~ 339 (482)
|.+.|+.+..... .....++|||+|||..+ |+++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+
T Consensus 167 i~v~~a~~~~~~~---~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~ 243 (284)
T 3smz_A 167 LYVHWTDAGQLTP---ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQ 243 (284)
T ss_dssp CEEEECCGGGCCT---TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHH
T ss_pred EEEEECCCCCCCc---ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHH
Confidence 9999998765432 22456899999999995 999999999999999999999988777 999999999999999999
Q ss_pred HHcCCceeCCcEEEEEEccCCCC
Q 011574 340 KDTEKYEIDGQVLEVVLAKPQTD 362 (482)
Q Consensus 340 ~~l~~~~~~g~~l~v~~a~~~~~ 362 (482)
..||+..|.|++|+|.|+.++..
T Consensus 244 ~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 244 QQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHTTCEETTEECEEEECCSSSC
T ss_pred HHhCCCccCCeEEEEEEecCCCc
Confidence 99999999999999999987754
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.6e-35 Score=263.99 Aligned_cols=170 Identities=22% Similarity=0.440 Sum_probs=152.6
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
..++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+||+.+++..+.|+.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred CcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCee
Q 011574 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (482)
Q Consensus 185 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (482)
.....
T Consensus 94 ~~~~~--------------------------------------------------------------------------- 98 (213)
T 4f02_A 94 RDPSL--------------------------------------------------------------------------- 98 (213)
T ss_dssp CCTHH---------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 22100
Q ss_pred eecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCC
Q 011574 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344 (482)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~ 344 (482)
......+|||+|||+.+|+++|+++|++||.|..|.|+.+..+.+|||||+|.+.++|.+||+.|||
T Consensus 99 -------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 99 -------------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp -------------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred -------------cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 0012258999999999999999999999999999999988765699999999999999999999999
Q ss_pred ceeCCcEEEEEEccCCCC
Q 011574 345 YEIDGQVLEVVLAKPQTD 362 (482)
Q Consensus 345 ~~~~g~~l~v~~a~~~~~ 362 (482)
+.|+|++|+|.+|.++..
T Consensus 166 ~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 166 MLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp CEETTEECEEEECCCHHH
T ss_pred CEECCEEEEEEEcCCCcc
Confidence 999999999999987643
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=8.7e-33 Score=243.70 Aligned_cols=178 Identities=24% Similarity=0.465 Sum_probs=148.1
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 102 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
.+...++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+||+. ++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 344678999999999999999999999999999999999999999999999999999999999955 8999999999998
Q ss_pred ecCCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCC
Q 011574 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (482)
Q Consensus 182 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (482)
++...... ..
T Consensus 88 ~~~~~~~~-------------------------------------~~--------------------------------- 97 (196)
T 1l3k_A 88 RAVSREDS-------------------------------------QR--------------------------------- 97 (196)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred cccCcccc-------------------------------------cc---------------------------------
Confidence 87532100 00
Q ss_pred CeeeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHH
Q 011574 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAV 339 (482)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~ 339 (482)
.......++|||+|||..+|+++|+++|++||.|..|.|+.+.. +. +|||||+|.+.++|.+||
T Consensus 98 --------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 98 --------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp -------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred --------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 00012237999999999999999999999999999999998864 44 899999999999999999
Q ss_pred HHcCCceeCCcEEEEEEccCCCCCCC
Q 011574 340 KDTEKYEIDGQVLEVVLAKPQTDKKT 365 (482)
Q Consensus 340 ~~l~~~~~~g~~l~v~~a~~~~~~~~ 365 (482)
.. +++.|+|+.|.|.++.++.....
T Consensus 164 ~~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 164 IQ-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HC-SCCEETTEECEEEECC-------
T ss_pred Hh-CCcEECCEEEEEEecCChhHhcc
Confidence 85 89999999999999998876543
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.6e-32 Score=234.43 Aligned_cols=163 Identities=27% Similarity=0.509 Sum_probs=148.8
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
+.++|||+|||+++|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|++.|++..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999998875
Q ss_pred CcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCee
Q 011574 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (482)
Q Consensus 185 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (482)
+...
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 3210
Q ss_pred eecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCC-CCC-CcEEEEEeCCHHHHHHHHHHc
Q 011574 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVKDT 342 (482)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~~-kg~afV~f~~~e~A~~A~~~l 342 (482)
....++|||+|||..+++++|+++|++||.|..|.|+.++ .+. +|||||+|.+.++|.+|+..|
T Consensus 86 --------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 151 (168)
T 1b7f_A 86 --------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 151 (168)
T ss_dssp --------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred --------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 0123689999999999999999999999999999999887 444 899999999999999999999
Q ss_pred CCceeCC--cEEEEEEc
Q 011574 343 EKYEIDG--QVLEVVLA 357 (482)
Q Consensus 343 ~~~~~~g--~~l~v~~a 357 (482)
|+..|.| ++|+|.||
T Consensus 152 ~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 152 NNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TTCCCTTCSSCCEEEEC
T ss_pred cCCEecCCCeEEEEEeC
Confidence 9999988 99999986
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=5.9e-32 Score=242.23 Aligned_cols=179 Identities=24% Similarity=0.440 Sum_probs=150.8
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
..++|||+|||+++|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46899999999999999999999999999999999999889999999999999999999999999999999999997765
Q ss_pred CcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCee
Q 011574 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (482)
Q Consensus 185 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (482)
..... ... ...+.
T Consensus 107 ~~~~~---------------------------------------------------~~~---~~~~~------------- 119 (216)
T 2qfj_A 107 NIGQA---------------------------------------------------QPI---IDQLA------------- 119 (216)
T ss_dssp CCGGG---------------------------------------------------HHH---HHHHH-------------
T ss_pred Ccccc---------------------------------------------------chh---hhhhh-------------
Confidence 32110 000 00000
Q ss_pred eecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHc
Q 011574 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDT 342 (482)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l 342 (482)
......++|||+|||..+|+++|+++|++||.|..|.|+.++. +. ++||||+|.+.++|.+|+..|
T Consensus 120 ------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 120 ------------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp ------------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ------------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc
Confidence 0012347999999999999999999999999999999998864 34 899999999999999999999
Q ss_pred CCceeCCcEEEEEEccCCCC
Q 011574 343 EKYEIDGQVLEVVLAKPQTD 362 (482)
Q Consensus 343 ~~~~~~g~~l~v~~a~~~~~ 362 (482)
|+..|.|++|+|.++.++..
T Consensus 188 ~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp TTCBCSSSBCEEEECSSCSS
T ss_pred cCCEeCCcEEEEEEecCCCC
Confidence 99999999999999987743
No 7
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-32 Score=231.82 Aligned_cols=163 Identities=18% Similarity=0.385 Sum_probs=146.1
Q ss_pred CEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCCc
Q 011574 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~~ 186 (482)
++|||+|||+++|+++|+++|++||.|.+|+++.++. ++++|||||+|.+.++|.+|++.|++..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999876 789999999999999999999999999999999999877532
Q ss_pred ceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeeee
Q 011574 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (482)
Q Consensus 187 ~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (482)
..
T Consensus 80 ~~------------------------------------------------------------------------------ 81 (166)
T 3md3_A 80 QQ------------------------------------------------------------------------------ 81 (166)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred cCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCC
Q 011574 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEK 344 (482)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~ 344 (482)
......++|||+|||..+|+++|+++|++||.|..+.|+.+.. +. +|||||+|.+.++|.+|+..||+
T Consensus 82 ----------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 151 (166)
T 3md3_A 82 ----------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG 151 (166)
T ss_dssp ----------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred ----------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Confidence 0002236899999999999999999999999999999988854 34 89999999999999999999999
Q ss_pred ceeCCcEEEEEEcc
Q 011574 345 YEIDGQVLEVVLAK 358 (482)
Q Consensus 345 ~~~~g~~l~v~~a~ 358 (482)
..|+|++|+|.||+
T Consensus 152 ~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 152 QDLNGRPLRINWAA 165 (166)
T ss_dssp CEETTEECEEEESC
T ss_pred CccCCcEEEEEecC
Confidence 99999999999985
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=8.5e-32 Score=230.94 Aligned_cols=162 Identities=27% Similarity=0.508 Sum_probs=146.5
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~ 185 (482)
.++|||+|||+++|+++|+++|+.||.|..|+++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999998899999999999999999999999999999999999987653
Q ss_pred cceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeee
Q 011574 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (482)
Q Consensus 186 ~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (482)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 1fxl_A 82 SSA----------------------------------------------------------------------------- 84 (167)
T ss_dssp CCG-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 210
Q ss_pred ecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcC
Q 011574 266 WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTE 343 (482)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~ 343 (482)
....++|||+|||..+++++|+++|++||.|..|.|+.+.. +. +|||||+|.+.++|.+|+..||
T Consensus 85 -------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 85 -------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp -------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred -------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Confidence 01236899999999999999999999999999999988763 44 8999999999999999999999
Q ss_pred CceeCCcE--EEEEEc
Q 011574 344 KYEIDGQV--LEVVLA 357 (482)
Q Consensus 344 ~~~~~g~~--l~v~~a 357 (482)
+..|.|+. |+|.||
T Consensus 152 g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 152 GQKPSGATEPITVKFA 167 (167)
T ss_dssp TCCCTTCSSCCEEEEC
T ss_pred CCccCCCccceEEEeC
Confidence 99999964 888876
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=3e-32 Score=233.74 Aligned_cols=163 Identities=25% Similarity=0.517 Sum_probs=145.0
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
++++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++ ++..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999996 4578889988776653
Q ss_pred CcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCee
Q 011574 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (482)
Q Consensus 185 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (482)
+...
T Consensus 80 ~~~~---------------------------------------------------------------------------- 83 (167)
T 2cjk_A 80 PRDE---------------------------------------------------------------------------- 83 (167)
T ss_dssp CHHH----------------------------------------------------------------------------
T ss_pred chhh----------------------------------------------------------------------------
Confidence 2100
Q ss_pred eecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHc
Q 011574 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDT 342 (482)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l 342 (482)
....++|||+|||..+|+++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|++ +
T Consensus 84 --------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~ 148 (167)
T 2cjk_A 84 --------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-N 148 (167)
T ss_dssp --------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-C
T ss_pred --------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-C
Confidence 01125899999999999999999999999999999998864 44 8999999999999999998 8
Q ss_pred CCceeCCcEEEEEEccCC
Q 011574 343 EKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 343 ~~~~~~g~~l~v~~a~~~ 360 (482)
++..|.|++|+|.+|.++
T Consensus 149 ~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 149 KFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SEECSSSSCEEEEECCCC
T ss_pred CCEEeCCeEEEEeecCCC
Confidence 999999999999999876
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=1.6e-31 Score=231.08 Aligned_cols=165 Identities=25% Similarity=0.492 Sum_probs=143.6
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCC--CccceEEEEeCCHHHHHHHHHHhCCCCcC---CeEEE
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAIDELHSKELK---GKTIR 179 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g--~~~g~afV~f~~~e~A~~al~~l~~~~~~---g~~l~ 179 (482)
+.++|||+|||+++|+++|+++|++||.|.+|++++++.++ +++|||||+|.+.++|.+|++.|++..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999998876 89999999999999999999999998765 45555
Q ss_pred EeecCCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCC
Q 011574 180 CSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259 (482)
Q Consensus 180 v~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~ 259 (482)
+.++.....
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 544331100
Q ss_pred CCCeeeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHH
Q 011574 260 NTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338 (482)
Q Consensus 260 ~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A 338 (482)
.....++|||+|||..+|+++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|
T Consensus 91 ------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 91 ------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp ------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHH
T ss_pred ------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHH
Confidence 00234689999999999999999999999999999999988777 99999999999999999
Q ss_pred HHHcCCceeC---CcEEEEEEcc
Q 011574 339 VKDTEKYEID---GQVLEVVLAK 358 (482)
Q Consensus 339 ~~~l~~~~~~---g~~l~v~~a~ 358 (482)
+..||+..+. +++|+|.||.
T Consensus 153 ~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 153 IKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHhcCCcccCCCCCCeEEEecC
Confidence 9999998776 4999999983
No 11
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=3.8e-30 Score=226.29 Aligned_cols=195 Identities=19% Similarity=0.273 Sum_probs=144.5
Q ss_pred CCCEEEECCCC-CCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 105 NGSEVFIGGLP-KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 105 ~~~~v~v~nLp-~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
.+++|||+||| +.+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999875 3789999999999999999999999999999999998
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCe
Q 011574 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (482)
Q Consensus 184 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (482)
+.... .|..... . .-+. ... ++....... .|.....+
T Consensus 78 ~~~~~-----~p~~~~~------~-~~~~-~~~----~~~~~~~~~------r~~~~~~~-------------------- 114 (205)
T 3tyt_A 78 KQPAI-----MPGQSYG------L-EDGS-CSY----KDFSESRNN------RFSTPEQA-------------------- 114 (205)
T ss_dssp SCSCC-----CCCSCCB------C-TTSC-BSE----EECTTCTTC------SCSSHHHH--------------------
T ss_pred cCCcc-----CCCcccc------c-ccCC-ccc----cccCCCccc------cccCcccc--------------------
Confidence 75432 1110000 0 0000 000 000000000 00000000
Q ss_pred eeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccce--eEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 011574 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (482)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v--~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~ 341 (482)
.. .....+.++|||+|||+.+|+++|+++|++||.| ..|+|+.++..+++||||+|.+.++|.+||..
T Consensus 115 ----~~------~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~ 184 (205)
T 3tyt_A 115 ----AK------NRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGF 184 (205)
T ss_dssp ----TT------SCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHH
T ss_pred ----cc------cccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHH
Confidence 00 0001234789999999999999999999999999 89999888744479999999999999999999
Q ss_pred cCCceeCCc----EEEEEEc
Q 011574 342 TEKYEIDGQ----VLEVVLA 357 (482)
Q Consensus 342 l~~~~~~g~----~l~v~~a 357 (482)
||+..|.|+ ++.|.||
T Consensus 185 lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 185 LNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HTTCEECCSSSSSCEECEEE
T ss_pred hCCCCccCCCCCcceEEEec
Confidence 999999886 6888776
No 12
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1.8e-29 Score=235.54 Aligned_cols=248 Identities=17% Similarity=0.250 Sum_probs=151.4
Q ss_pred CCCCCEEEECCCCCCCCHHHHH----HhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEE
Q 011574 103 PPNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~----~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l 178 (482)
....++|||+|||+++|+++|+ ++|++||.|..|++++ +++++|||||+|.+.++|.+||+.||+..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3467899999999999999977 8999999999999886 58899999999999999999999999999999999
Q ss_pred EEeecCCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEe----CCHH-HHHHHHHHHhcc
Q 011574 179 RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY----YNNA-CADYSRQKMLNA 253 (482)
Q Consensus 179 ~v~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f----~~~~-~a~~a~~~~~~~ 253 (482)
+|.++............. ..+......-..... ...................+.+.- .... .+......+.+.
T Consensus 83 ~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGT-FVERDRKREKRKPKS-QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEeccCcchhhhhcCC-cccchhhhhhhhccc-cchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 999987654322211111 100000000000000 000000000000000000000000 0000 000000000000
Q ss_pred cccc--CC----CCC-eeeec---------CCCCC--CCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcC
Q 011574 254 NFKL--DG----NTP-TISWA---------DPKST--PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP 315 (482)
Q Consensus 254 ~~~~--~~----~~~-~v~~~---------~~~~~--~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~ 315 (482)
.-.. .+ ... ...+. .+... ..........++|||+|||..+|+++|+++|++||.|..|.|+
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 0000 00 000 00000 00000 0001122346889999999999999999999999999999998
Q ss_pred CCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeC-CcEEEEEEcc
Q 011574 316 PGKSGKRDFGFIHYAERSSALKAVKDTEKYEID-GQVLEVVLAK 358 (482)
Q Consensus 316 ~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~-g~~l~v~~a~ 358 (482)
.++ +|||||+|.+.++|.+|+..||+..|. |+.|+|.|++
T Consensus 241 ~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 655 589999999999999999999999999 9999999985
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=7.6e-31 Score=226.74 Aligned_cols=165 Identities=22% Similarity=0.381 Sum_probs=141.3
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 102 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
.+...++|||+|||+++|+++|+++|..||.|.. .++.+..+++++|||||+|.+.++|.+|| .||+..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 4456789999999999999999999999998766 34455566889999999999999999999 599999999999999
Q ss_pred ecCCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCC
Q 011574 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (482)
Q Consensus 182 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (482)
++.....
T Consensus 87 ~~~~~~~------------------------------------------------------------------------- 93 (175)
T 1fje_B 87 KPKGRDS------------------------------------------------------------------------- 93 (175)
T ss_dssp CCCCSSC-------------------------------------------------------------------------
T ss_pred cCCCccc-------------------------------------------------------------------------
Confidence 8753210
Q ss_pred CeeeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHH
Q 011574 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340 (482)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~ 340 (482)
......++|||+|||..+|+++|+++|++||.|..+ ...+. +|||||+|.+.++|.+|+.
T Consensus 94 ---------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 94 ---------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp ---------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred ---------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHH
Confidence 000234799999999999999999999999998877 22333 8999999999999999999
Q ss_pred HcCCceeCCcEEEEEEccCC
Q 011574 341 DTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 341 ~l~~~~~~g~~l~v~~a~~~ 360 (482)
.||+..|.|++|+|.|+.++
T Consensus 155 ~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 155 EKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHTEEEETTEEEEEEECSSC
T ss_pred HhCCCEECCeEEEEEecCCC
Confidence 99999999999999999875
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=6.2e-30 Score=220.39 Aligned_cols=157 Identities=19% Similarity=0.416 Sum_probs=138.8
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccC----C-------CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCc
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPI----G-------DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~----G-------~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~ 173 (482)
+.++|||+|||+++|+++|+++|++| | .|..+.+. +++|||||+|.+.++|.+|+ .+|+..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 77777774 34789999999999999999 8999999
Q ss_pred CCeEEEEeecCCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhcc
Q 011574 174 KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (482)
Q Consensus 174 ~g~~l~v~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 253 (482)
.|+.|.|.++.....
T Consensus 76 ~g~~i~v~~~~~~~~----------------------------------------------------------------- 90 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------------------------------------------------------- 90 (172)
T ss_dssp TTEECEEECCSSCCC-----------------------------------------------------------------
T ss_pred cCceeeecCCcccCC-----------------------------------------------------------------
Confidence 999999987642110
Q ss_pred ccccCCCCCeeeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCC-CCC-CcEEEEEeCC
Q 011574 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAE 331 (482)
Q Consensus 254 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~~-kg~afV~f~~ 331 (482)
....++|||+|||..+|+++|+++|++||.|..|.|+.++ .+. +|||||+|.+
T Consensus 91 -------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 91 -------------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp -------------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred -------------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 0113689999999999999999999999999999999886 444 8999999999
Q ss_pred HHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 332 RSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 332 ~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
.++|.+|+..||+..|+|++|.|.||.
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 146 INVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999999999999983
No 15
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=1.3e-29 Score=223.77 Aligned_cols=181 Identities=18% Similarity=0.358 Sum_probs=144.4
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccC----C-------CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCc
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPI----G-------DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~----G-------~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~ 173 (482)
.+++|||+|||+++|+++|+++|+.| | .|..+.+ ++++|||||+|.+.++|.+|| .||+..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 5666666 455899999999999999999 8999999
Q ss_pred CCeEEEEeecCCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhcc
Q 011574 174 KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (482)
Q Consensus 174 ~g~~l~v~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 253 (482)
.|+.|.|.++......-- .....
T Consensus 76 ~g~~i~v~~~~~~~~~~~---------------------------------~~~~~------------------------ 98 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPG---------------------------------MSENP------------------------ 98 (198)
T ss_dssp TTEEEEEECCCCCCCCCC---------------------------------SSSCS------------------------
T ss_pred cCceEEEeCCCCCCCCCC---------------------------------CcCCC------------------------
Confidence 999999998764321000 00000
Q ss_pred ccccCCCCCeeeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCC-CCC-CcEEEEEeCC
Q 011574 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAE 331 (482)
Q Consensus 254 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~~-kg~afV~f~~ 331 (482)
.... +. ..........++|||+|||..+++++|+++|++||.|..|.|+.++ .+. +|||||+|.+
T Consensus 99 ~~~~-----------~~--~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~ 165 (198)
T 2yh0_A 99 SVYV-----------PG--VVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 165 (198)
T ss_dssp SCCC-----------TT--SSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred cCCC-----------CC--CccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECC
Confidence 0000 00 0001111345899999999999999999999999999999999886 344 8999999999
Q ss_pred HHHHHHHHHHcCCceeCCcEEEEEEccCCCC
Q 011574 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (482)
Q Consensus 332 ~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 362 (482)
.++|.+|+..||+..|.|++|+|.++.++..
T Consensus 166 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 166 INVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp SSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999999999999999987653
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=4.5e-29 Score=224.79 Aligned_cols=195 Identities=23% Similarity=0.307 Sum_probs=147.6
Q ss_pred CCCCCEEEECCCCC-CCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 103 PPNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 103 ~~~~~~v~v~nLp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
.+.+++|||+|||+ ++|+++|+++|++||.|..|+|+.++ +|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34678999999999 99999999999999999999999875 7899999999999999999999999999999999
Q ss_pred ecCCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCC
Q 011574 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (482)
Q Consensus 182 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (482)
++....... +..... .... ...|. ...
T Consensus 106 ~a~~~~~~~----~~~~~~------------------------~~~~-----~~~~~--------------------~~~ 132 (229)
T 2adc_A 106 LSKHQNVQL----PREGQE------------------------DQGL-----TKDYG--------------------NSP 132 (229)
T ss_dssp CCSCCCCCC----CCSSSS------------------------TTTT-----EEECT--------------------TCS
T ss_pred EecCccccC----cccccc------------------------cccc-----ccccc--------------------cCc
Confidence 987542210 000000 0000 00000 000
Q ss_pred CeeeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhccc-ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 011574 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (482)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~ 340 (482)
. ..................++|||+|||..+++++|+++|++|| .|..|.|.... ++||||+|.+.++|.+|+.
T Consensus 133 ~--~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~---~g~afV~f~~~~~A~~Ai~ 207 (229)
T 2adc_A 133 L--HRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALI 207 (229)
T ss_dssp S--CCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS---TTCEEEEESSHHHHHHHHH
T ss_pred c--cccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC---CcEEEEEECCHHHHHHHHH
Confidence 0 0000000000011123458999999999999999999999999 99999996532 4899999999999999999
Q ss_pred HcCCceeC-CcEEEEEEccCC
Q 011574 341 DTEKYEID-GQVLEVVLAKPQ 360 (482)
Q Consensus 341 ~l~~~~~~-g~~l~v~~a~~~ 360 (482)
.||+..|. |++|+|.|++++
T Consensus 208 ~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 208 DLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHTTCBSSSSCBCEEEECSSC
T ss_pred HHCCCccCCCCeEEEEEecCC
Confidence 99999999 999999999865
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=4.2e-29 Score=220.31 Aligned_cols=193 Identities=25% Similarity=0.373 Sum_probs=147.0
Q ss_pred CCCEEEECCCCC-CCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 105 NGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 105 ~~~~v~v~nLp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
.+++|||+|||+ ++|+++|+++|++||.|..|+++.++ +|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368999999999 99999999999999999999998874 689999999999999999999999999999999998
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCe
Q 011574 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (482)
Q Consensus 184 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (482)
...... ++..... .....+. |.. . .. .+
T Consensus 77 ~~~~~~----~~~~~~~------------------------~~~~~~~-----~~~-------------~--~~-~r--- 104 (198)
T 1qm9_A 77 KHQNVQ----LPREGQE------------------------DQGLTKD-----YGN-------------S--PL-HR--- 104 (198)
T ss_dssp CCCSCC----CSSSSSS------------------------SSSCEEE-----SSC-------------C--CT-TS---
T ss_pred cCCCcC----CCCcCCc------------------------ccccccc-----ccC-------------C--ch-hh---
Confidence 754311 1100000 0000000 000 0 00 00
Q ss_pred eeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhccc-ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHc
Q 011574 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (482)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l 342 (482)
+..+ ..........+.++|||+|||..+++++|+++|++|| .|..|.|..+. +|+|||+|.+.++|.+|+..|
T Consensus 105 --~~~~-~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~l 178 (198)
T 1qm9_A 105 --FKKP-GSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDL 178 (198)
T ss_dssp --SSSC-CCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT---SSCEEEECSSHHHHHHHHHHH
T ss_pred --ccCc-cccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHh
Confidence 0000 0000011123468999999999999999999999999 99999996643 589999999999999999999
Q ss_pred CCceeC-CcEEEEEEccCC
Q 011574 343 EKYEID-GQVLEVVLAKPQ 360 (482)
Q Consensus 343 ~~~~~~-g~~l~v~~a~~~ 360 (482)
|+..|. |++|+|.|++++
T Consensus 179 ~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 179 HNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCCSSCCSCCEEEECCC
T ss_pred cCCccCCCCeEEEEeeccc
Confidence 999999 999999999764
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=1.1e-28 Score=226.68 Aligned_cols=157 Identities=29% Similarity=0.450 Sum_probs=141.2
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|+.||.|..|++.++ +|||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 45689999999999999999999999999999999643 789999999999999999999999999999998865
Q ss_pred CCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCe
Q 011574 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (482)
Q Consensus 184 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (482)
.+
T Consensus 94 ~~------------------------------------------------------------------------------ 95 (261)
T 3sde_A 94 TH------------------------------------------------------------------------------ 95 (261)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 31
Q ss_pred eeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHc
Q 011574 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342 (482)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l 342 (482)
.++|||+|||..+|+++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+||..|
T Consensus 96 ------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 96 ------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp ------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 1589999999999999999999999999999999887666 999999999999999999999
Q ss_pred C-CceeC---CcEEEEEEccCCCC
Q 011574 343 E-KYEID---GQVLEVVLAKPQTD 362 (482)
Q Consensus 343 ~-~~~~~---g~~l~v~~a~~~~~ 362 (482)
| +..+. +++|.|.++.+...
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCEES
T ss_pred cCCeEEecCCCceEEEeeccccCc
Confidence 5 55554 89999999987644
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=2.9e-26 Score=214.04 Aligned_cols=164 Identities=20% Similarity=0.390 Sum_probs=152.2
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
+..++|||+|||+++|+++|+++|+.||.|..|+++.+..++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred CCc---------ceeeeCCCCCCC-CHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhcc
Q 011574 184 ETK---------NRLFIGNVPKNW-TEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (482)
Q Consensus 184 ~~~---------~~l~v~nLp~~~-t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 253 (482)
..+ ++|||+|||..+ ++++|+++|+.||. |..+.++.++ .+.++++|||.|.+.++|.+|+..|++.
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~-i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~ 249 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHS-PTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADGL 249 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC-CSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCC-eEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 653 589999999996 99999999999998 9999999984 6888999999999999999999999876
Q ss_pred ccccCCCCCeeeecCCCCC
Q 011574 254 NFKLDGNTPTISWADPKST 272 (482)
Q Consensus 254 ~~~~~~~~~~v~~~~~~~~ 272 (482)
.+.++.|.|.|+.+...
T Consensus 250 --~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 250 --SLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp --EETTEECEEEECCSSSC
T ss_pred --ccCCeEEEEEEecCCCc
Confidence 55899999999987654
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=6.5e-26 Score=212.51 Aligned_cols=161 Identities=23% Similarity=0.396 Sum_probs=141.0
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCC-CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
..++|||+|||+++|+++|+++|+.|| .|..|.++.+.. +.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 678999999999999999999999999 999999998876 889999999999999999999999999999999999987
Q ss_pred CC-------------cceeeeCCCCCC-CCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHH
Q 011574 184 ET-------------KNRLFIGNVPKN-WTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249 (482)
Q Consensus 184 ~~-------------~~~l~v~nLp~~-~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~ 249 (482)
.+ .++|||+|||.. +++++|+++|+.||. |..+.+++++..++.+++||||.|.+.++|.+|+ .
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~ 272 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS-IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q 272 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC-EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC-eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H
Confidence 53 268999999999 999999999999998 9999999985435899999999999999999999 8
Q ss_pred HhccccccCCCCCeeeecCCC
Q 011574 250 MLNANFKLDGNTPTISWADPK 270 (482)
Q Consensus 250 ~~~~~~~~~~~~~~v~~~~~~ 270 (482)
|++. .+.++.|.|.|+.++
T Consensus 273 l~g~--~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 273 MNRS--LLGNREISVSLADKK 291 (292)
T ss_dssp GTTE--EETTEEEEEEECCCC
T ss_pred hcCC--EECCcEEEEEEecCC
Confidence 8775 577999999998875
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=7.4e-22 Score=166.80 Aligned_cols=144 Identities=22% Similarity=0.342 Sum_probs=113.0
Q ss_pred EEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccc-----cccCCCCCeeeecCCCCCCCccccccCcceEEEecCC
Q 011574 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-----FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIP 291 (482)
Q Consensus 217 ~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp 291 (482)
+.|+.+. ..++||+||+|.+.+.|.+|++.+++.. ....+.......................++|||+|||
T Consensus 3 ~kl~ln~---~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 3 YKLILNG---KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEC---SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred EEEEecC---ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 4455542 3689999999999999999998887532 2223333333333333332233333556899999999
Q ss_pred CCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCCCC
Q 011574 292 DNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (482)
Q Consensus 292 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 363 (482)
+.+|+++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+||..||++.|.|++|+|.++.++..+
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 9999999999999999999999999864 44 999999999999999999999999999999999999876543
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=5.1e-22 Score=157.58 Aligned_cols=97 Identities=23% Similarity=0.440 Sum_probs=74.0
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|++||.|.+|+|+.+. +.++|||||+|.+.++|.+||+.|++..|.|+.|.|.++
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 346789999999999999999999999999999999986 458999999999999999999999999999999999987
Q ss_pred CCc--------------ceeeeCCCCCCCCHHH
Q 011574 184 ETK--------------NRLFIGNVPKNWTEDE 202 (482)
Q Consensus 184 ~~~--------------~~l~v~nLp~~~t~~~ 202 (482)
..+ ++|||+|||+.+|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC----------------------------
T ss_pred CCccccccccccccCCCCceEeCCCCCCccccc
Confidence 643 4799999999998763
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=4.5e-21 Score=147.29 Aligned_cols=83 Identities=31% Similarity=0.586 Sum_probs=79.5
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
.-.+++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|++.||+..|.|++|+|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 011574 183 SET 185 (482)
Q Consensus 183 ~~~ 185 (482)
+++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 875
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=8.6e-21 Score=158.55 Aligned_cols=139 Identities=15% Similarity=0.206 Sum_probs=111.2
Q ss_pred CCccceEEEEeCCHHHHHHHHHHh-CCCCcCCeEEEEeecCCcceeeeCCCCCCCCHHHHHHHHhhhCCcccEEEEeeCC
Q 011574 145 GESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223 (482)
Q Consensus 145 g~~~g~afV~f~~~e~A~~al~~l-~~~~~~g~~l~v~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~~~~~~d~ 223 (482)
...+|+++|+|.+.++|++|++.+ |+..+.| .|.+.++....... ...
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~-----------------------------~~~- 58 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVT-----------------------------EGS- 58 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEE-----------------------------CSS-
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccc-----------------------------ccc-
Confidence 456899999999999999999999 9999999 99998765321110 000
Q ss_pred CCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeeeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHH
Q 011574 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303 (482)
Q Consensus 224 ~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F 303 (482)
. ..............++|||+|||+.+|+++|+++|
T Consensus 59 -~-------------------------------------------~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F 94 (150)
T 2i2y_A 59 -H-------------------------------------------HHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAF 94 (150)
T ss_dssp -S-------------------------------------------SCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHH
T ss_pred -c-------------------------------------------cccccccccCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 0 00000001112345899999999999999999999
Q ss_pred hcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCC
Q 011574 304 QRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (482)
Q Consensus 304 ~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 361 (482)
++||.|..|.|+.+ .+|||||+|.+.++|.+||..||+..|.|++|+|.++.++.
T Consensus 95 ~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 95 GYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999887 35999999999999999999999999999999999998763
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=3.9e-20 Score=142.04 Aligned_cols=79 Identities=24% Similarity=0.487 Sum_probs=74.1
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
+.++|||+|||..+|+++|+++|++||.|..|.|++++.+ . +|||||+|.+.++|.+||+.||+..|.|++|+|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 4578999999999999999999999999999999988763 4 8999999999999999999999999999999999997
Q ss_pred C
Q 011574 359 P 359 (482)
Q Consensus 359 ~ 359 (482)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 26
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=141.14 Aligned_cols=83 Identities=28% Similarity=0.375 Sum_probs=79.3
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
+..++|||+|||+++|+++|+++|++||.|.+|+|+.++.|++++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 643
No 27
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.79 E-value=1.2e-20 Score=168.15 Aligned_cols=79 Identities=23% Similarity=0.321 Sum_probs=73.4
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccc--ceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
.++|||+||++.+|+++|+++|++|| .|+.|.|+.++. +. ||||||+|.+.++|.+||..||++.|.|+.|+|.++
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 47899999999999999999999999 999999999874 44 999999999999999999999999999999999999
Q ss_pred cCC
Q 011574 358 KPQ 360 (482)
Q Consensus 358 ~~~ 360 (482)
.+.
T Consensus 148 ~~~ 150 (229)
T 3q2s_C 148 NKQ 150 (229)
T ss_dssp CHH
T ss_pred CCC
Confidence 754
No 28
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-19 Score=136.53 Aligned_cols=80 Identities=20% Similarity=0.448 Sum_probs=72.9
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccc-ceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcC-CceeCCcEEEEEEcc
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTE-KYEIDGQVLEVVLAK 358 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~-~~~~~g~~l~v~~a~ 358 (482)
++|||+|||+.+|+++|+++|++|| .|.+|+|++++.+ . +|||||+|.+.++|.+||+.++ +..|.|++|+|.+|.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 8999999998764 3 9999999999999999999774 567999999999998
Q ss_pred CCCC
Q 011574 359 PQTD 362 (482)
Q Consensus 359 ~~~~ 362 (482)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 29
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=4.6e-20 Score=139.43 Aligned_cols=82 Identities=34% Similarity=0.547 Sum_probs=76.0
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCC-CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhC-CCCcCCeEEEEeec
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH-SKELKGKTIRCSLS 183 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~-~~~~~g~~l~v~~~ 183 (482)
+++|||+|||+++|+++|+++|++|| .|.+|+|++++.|++++|||||+|.+.++|.+||+.++ +..|.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999998764 56799999999999
Q ss_pred CCcc
Q 011574 184 ETKN 187 (482)
Q Consensus 184 ~~~~ 187 (482)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8654
No 30
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=137.35 Aligned_cols=81 Identities=25% Similarity=0.441 Sum_probs=75.6
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCC--eeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCC----cCCeEE
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGD--VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE----LKGKTI 178 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~--v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~----~~g~~l 178 (482)
.-.||||+|||+++|+++|+++|++||. |.+|++++|+.|++++|||||+|.+.++|.+||+.||+.. |.||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4578999999999999999999999994 6799999999999999999999999999999999999974 899999
Q ss_pred EEeecCC
Q 011574 179 RCSLSET 185 (482)
Q Consensus 179 ~v~~~~~ 185 (482)
.|.++++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999874
No 31
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=135.04 Aligned_cols=85 Identities=22% Similarity=0.353 Sum_probs=78.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+.++||||+|.+.++|.+||..||+..|.|++|+|.|+.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 45689999999999999999999999999999999998766689999999999999999999999999999999999988
Q ss_pred CCCCC
Q 011574 360 QTDKK 364 (482)
Q Consensus 360 ~~~~~ 364 (482)
+..+.
T Consensus 93 ~~~~~ 97 (103)
T 2cqi_A 93 PSSQK 97 (103)
T ss_dssp TTCCC
T ss_pred Ccccc
Confidence 65443
No 32
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=4.3e-19 Score=149.23 Aligned_cols=84 Identities=25% Similarity=0.402 Sum_probs=76.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+|+++|+++|++||.|..|.|+.++.+ . ++||||+|.+.++|.+||..||++.|.|++|+|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34589999999999999999999999999999999988764 3 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 011574 358 KPQTDK 363 (482)
Q Consensus 358 ~~~~~~ 363 (482)
.+....
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 876543
No 33
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.79 E-value=1.6e-19 Score=176.12 Aligned_cols=83 Identities=27% Similarity=0.449 Sum_probs=75.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||+.+|+++|+.+|++||.|+.|.|+.++. +. +|||||+|.+.++|.+||..||++.|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 3457999999999999999999999999999999998864 33 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 011574 358 KPQTD 362 (482)
Q Consensus 358 ~~~~~ 362 (482)
.++..
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 86643
No 34
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.79 E-value=3.1e-19 Score=141.48 Aligned_cols=82 Identities=15% Similarity=0.389 Sum_probs=75.7
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCC
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 361 (482)
..+|||+|||+.+|+++|+++|++||.|.+|+|+.++.+.+|||||+|.+.++|.+||..||++.|.|++|+|.++.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 36899999999999999999999999999999998876568999999999999999999999999999999999998765
Q ss_pred CC
Q 011574 362 DK 363 (482)
Q Consensus 362 ~~ 363 (482)
.+
T Consensus 85 ~~ 86 (115)
T 4f25_A 85 ER 86 (115)
T ss_dssp C-
T ss_pred cc
Confidence 43
No 35
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2e-18 Score=133.15 Aligned_cols=84 Identities=23% Similarity=0.419 Sum_probs=77.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+|+++|+++|++||.|..|.|+.++. +. ++||||+|.+.++|.+||..||++.|.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3458999999999999999999999999999999999873 44 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 011574 358 KPQTDK 363 (482)
Q Consensus 358 ~~~~~~ 363 (482)
.++..+
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 887654
No 36
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3e-18 Score=133.20 Aligned_cols=85 Identities=24% Similarity=0.395 Sum_probs=78.5
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
...++|||+|||..+|+++|+++|++||.|..|.|+.++.+.++||||+|.+.++|.+||..||++.|.|++|+|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 45689999999999999999999999999999999988766689999999999999999999999999999999999988
Q ss_pred CCCCC
Q 011574 360 QTDKK 364 (482)
Q Consensus 360 ~~~~~ 364 (482)
+..+.
T Consensus 93 ~~~~~ 97 (103)
T 2cq3_A 93 RVMTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 75443
No 37
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=133.02 Aligned_cols=83 Identities=33% Similarity=0.669 Sum_probs=79.6
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
.++
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 765
No 38
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=5.2e-19 Score=140.55 Aligned_cols=105 Identities=19% Similarity=0.331 Sum_probs=95.5
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
+...++|||+|||+++|+++|+++|++||.|..|.++.+ +.++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 446789999999999999999999999999999999876 45699999999999999999999999999999999999
Q ss_pred cCCcceeeeCCCCCCCCHHHHHHHHhhhCC
Q 011574 183 SETKNRLFIGNVPKNWTEDEFRKVIEDVGP 212 (482)
Q Consensus 183 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~ 212 (482)
+.+.... .+++...++++|.++|+++|.
T Consensus 82 a~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF--QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT--TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh--hhhhHhHhHHHHHHHHHHhCC
Confidence 9865443 688888999999999999995
No 39
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=1.3e-18 Score=130.26 Aligned_cols=82 Identities=33% Similarity=0.601 Sum_probs=78.0
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cC
Q 011574 183 SE 184 (482)
Q Consensus 183 ~~ 184 (482)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 40
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=131.73 Aligned_cols=82 Identities=21% Similarity=0.510 Sum_probs=75.9
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
..++|||+|||..+++++|+++|++||.|..|.|+.++. +. ++||||+|.+.++|.+||..||+..|.|++|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 458999999999999999999999999999999998875 33 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 011574 359 PQTD 362 (482)
Q Consensus 359 ~~~~ 362 (482)
++..
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 7643
No 41
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=130.86 Aligned_cols=82 Identities=32% Similarity=0.538 Sum_probs=76.8
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
..++|||+|||.++|+++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 56899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred Cc
Q 011574 185 TK 186 (482)
Q Consensus 185 ~~ 186 (482)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 53
No 42
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=131.57 Aligned_cols=82 Identities=24% Similarity=0.346 Sum_probs=76.3
Q ss_pred cCcceEEEecCCCCCCHHHHH----HHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEE
Q 011574 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~----~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~ 355 (482)
...++|||+|||+.+++++|+ ++|++||.|..|.|+.++.+ ++||||+|.+.++|.+||..||+..|.|++|+|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345799999999999999999 99999999999999998877 8999999999999999999999999999999999
Q ss_pred EccCCCC
Q 011574 356 LAKPQTD 362 (482)
Q Consensus 356 ~a~~~~~ 362 (482)
+++++..
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9976643
No 43
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=5.9e-18 Score=134.44 Aligned_cols=85 Identities=19% Similarity=0.350 Sum_probs=77.7
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++. +. ++||||+|.+.++|.+||..||++.|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4568999999999999999999999999999999998864 44 899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 011574 358 KPQTDKK 364 (482)
Q Consensus 358 ~~~~~~~ 364 (482)
.++....
T Consensus 93 ~~~~~~~ 99 (115)
T 2dgo_A 93 TRKPPAP 99 (115)
T ss_dssp SCCCCCS
T ss_pred cCCCCCC
Confidence 8776543
No 44
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=1.9e-18 Score=128.58 Aligned_cols=80 Identities=28% Similarity=0.552 Sum_probs=77.2
Q ss_pred CEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCCc
Q 011574 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~~ 186 (482)
++|||+|||+++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999998764
No 45
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=135.91 Aligned_cols=81 Identities=17% Similarity=0.253 Sum_probs=75.3
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
+.++|||+|||+.+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+||+.||+..|.|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999999998886 44 9999999999999999999999999999999999996
Q ss_pred CCC
Q 011574 359 PQT 361 (482)
Q Consensus 359 ~~~ 361 (482)
...
T Consensus 85 ~~~ 87 (110)
T 3s8s_A 85 KGQ 87 (110)
T ss_dssp TTH
T ss_pred CCc
Confidence 554
No 46
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.8e-18 Score=133.19 Aligned_cols=84 Identities=24% Similarity=0.424 Sum_probs=77.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++. +. ++||||+|.+.++|.+||..||+..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 4568999999999999999999999999999999999874 44 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 011574 358 KPQTDK 363 (482)
Q Consensus 358 ~~~~~~ 363 (482)
.++...
T Consensus 93 ~~~~~~ 98 (105)
T 1x5u_A 93 SAHNKN 98 (105)
T ss_dssp TTTSCC
T ss_pred CCCCcC
Confidence 877543
No 47
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3e-18 Score=133.02 Aligned_cols=85 Identities=25% Similarity=0.472 Sum_probs=77.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++.. . ++||||+|.+.++|.+||..||+..|.|++|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 45689999999999999999999999999999999988653 3 899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 011574 358 KPQTDKK 364 (482)
Q Consensus 358 ~~~~~~~ 364 (482)
.++..+.
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8876543
No 48
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8e-18 Score=133.84 Aligned_cols=82 Identities=27% Similarity=0.516 Sum_probs=75.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+|+++|+++|++||.|..|.|+.++.+ . ++||||+|.+.++|.+||..|++ .|.|++|+|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 45689999999999999999999999999999999998753 3 89999999999999999999998 899999999999
Q ss_pred cCCCC
Q 011574 358 KPQTD 362 (482)
Q Consensus 358 ~~~~~ 362 (482)
.+...
T Consensus 94 ~~~~~ 98 (116)
T 2cqd_A 94 YLGAK 98 (116)
T ss_dssp TTTCC
T ss_pred ccCCC
Confidence 76643
No 49
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=8.3e-19 Score=132.82 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=71.7
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccc--eeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCc----eeCCcEE
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGE--VTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKY----EIDGQVL 352 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~--v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~----~~~g~~l 352 (482)
...+|||+|||+.+|+++|+++|++||. |..|+|++++.+. ||||||+|.+.++|.+||+.||+. .|+||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3479999999999999999999999995 6799999987643 999999999999999999999986 5999999
Q ss_pred EEEEccC
Q 011574 353 EVVLAKP 359 (482)
Q Consensus 353 ~v~~a~~ 359 (482)
.|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999964
No 50
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=133.67 Aligned_cols=84 Identities=29% Similarity=0.501 Sum_probs=77.5
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+ .+. ++||||+|.+.++|.+||..||+..|.|++|+|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 45689999999999999999999999999999999988 555 8999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 011574 359 PQTDKK 364 (482)
Q Consensus 359 ~~~~~~ 364 (482)
++..+.
T Consensus 92 ~~~~~~ 97 (103)
T 2d9p_A 92 RKEERQ 97 (103)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876544
No 51
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4e-18 Score=131.74 Aligned_cols=83 Identities=19% Similarity=0.474 Sum_probs=77.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
...++|||+|||..+|+++|+++|++||.|..|.|+.++.+. ++||||+|.+.++|.+||..||+..|.|++|+|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 445899999999999999999999999999999999888666 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 011574 359 PQTD 362 (482)
Q Consensus 359 ~~~~ 362 (482)
++..
T Consensus 95 ~~~~ 98 (100)
T 2do4_A 95 SGPS 98 (100)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7643
No 52
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=131.71 Aligned_cols=82 Identities=33% Similarity=0.585 Sum_probs=78.0
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
++..++|||+|||+++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 011574 183 SE 184 (482)
Q Consensus 183 ~~ 184 (482)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 53
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.1e-18 Score=131.37 Aligned_cols=84 Identities=33% Similarity=0.552 Sum_probs=76.5
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++.. . ++||||+|.+.++|.+||. ||++.|.|++|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 44589999999999999999999999999999999988753 3 8999999999999999999 9999999999999999
Q ss_pred cCCCCCC
Q 011574 358 KPQTDKK 364 (482)
Q Consensus 358 ~~~~~~~ 364 (482)
.++..+.
T Consensus 87 ~~~~~~~ 93 (99)
T 2dgs_A 87 EPRDSKS 93 (99)
T ss_dssp CCCCCCC
T ss_pred CCCcccC
Confidence 8775543
No 54
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=8.4e-19 Score=142.91 Aligned_cols=124 Identities=19% Similarity=0.291 Sum_probs=79.2
Q ss_pred ceEEEEeCCHHHHHHHHHHHhccccccCCCCCeeeecCCCCCCCccccccCcceEEEecCCCCCCHHHHHHHHhccccee
Q 011574 231 GFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310 (482)
Q Consensus 231 g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~ 310 (482)
-++|+.|.+...+..|+..+++...... ....+..+. ......++|||+|||..+|+++|+++|++||.|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~---~~~~~~~~~------~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 75 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGR---GSMSYGRPP------PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 75 (135)
T ss_dssp ---------------------------------CCSCCSC------SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCC---CCCCcCCCC------CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 3678888888888888888876533211 122222221 2224568999999999999999999999999999
Q ss_pred EEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCCCC
Q 011574 311 KVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (482)
Q Consensus 311 ~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 363 (482)
.|.|+.++. +. +|||||+|.+.++|.+||..||+..|.|++|+|.|++++..+
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 999998864 33 899999999999999999999999999999999999876543
No 55
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=133.04 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=73.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcC--CceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~--~~~~~g~~l~v~~a 357 (482)
...++|||+|||+.+|+++|+++|++||.|+.|.|++++ |||||+|.+.++|.+||..|+ +..|.|++|+|.|+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k----GfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK----NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 445899999999999999999999999999999998874 999999999999999999886 47899999999999
Q ss_pred cCCCCCC
Q 011574 358 KPQTDKK 364 (482)
Q Consensus 358 ~~~~~~~ 364 (482)
+++....
T Consensus 90 ~~~~~~~ 96 (105)
T 1sjq_A 90 NHKELKT 96 (105)
T ss_dssp SSSSCCC
T ss_pred CCCCCCc
Confidence 8775543
No 56
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.8e-18 Score=132.62 Aligned_cols=81 Identities=22% Similarity=0.461 Sum_probs=74.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
...++|||+|||..+|+++|+++|++||.|..|.|..+.. .++||||+|.+.++|.+||+.||+..|.|+.|+|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG-GPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSS-SSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 4568999999999999999999999999999999976542 379999999999999999999999999999999999987
Q ss_pred CC
Q 011574 360 QT 361 (482)
Q Consensus 360 ~~ 361 (482)
+.
T Consensus 99 ~~ 100 (109)
T 1x4a_A 99 GR 100 (109)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 57
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.1e-18 Score=134.12 Aligned_cols=83 Identities=30% Similarity=0.523 Sum_probs=79.3
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 45789999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
.++
T Consensus 93 ~~~ 95 (103)
T 2cq0_A 93 KPS 95 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 765
No 58
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=132.95 Aligned_cols=85 Identities=31% Similarity=0.447 Sum_probs=80.3
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCCcc
Q 011574 183 SETKN 187 (482)
Q Consensus 183 ~~~~~ 187 (482)
+.++.
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 88654
No 59
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=133.59 Aligned_cols=84 Identities=23% Similarity=0.453 Sum_probs=77.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++... ++||||+|.+.++|.+||+.||+..|.|++|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999886533 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 011574 358 KPQTDK 363 (482)
Q Consensus 358 ~~~~~~ 363 (482)
.++...
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 877643
No 60
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=131.72 Aligned_cols=83 Identities=27% Similarity=0.633 Sum_probs=78.6
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||+ |++..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999997 999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+.++
T Consensus 86 a~~~ 89 (99)
T 2dgs_A 86 AEPR 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8765
No 61
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3e-18 Score=131.45 Aligned_cols=83 Identities=13% Similarity=0.275 Sum_probs=75.9
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEE-EcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v-~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
..++|||+|||..+++++|+++|++||.|..| .|+.++. +. ++||||+|.+.++|.+||..||+..|.|++|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45899999999999999999999999999999 9988854 44 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 011574 358 KPQTDK 363 (482)
Q Consensus 358 ~~~~~~ 363 (482)
.++..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 877543
No 62
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=135.16 Aligned_cols=83 Identities=24% Similarity=0.476 Sum_probs=76.7
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
...++|||+|||..+|+++|+++|++||.|..|.|+.++.+. ++||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 345899999999999999999999999999999999988655 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 011574 359 PQTD 362 (482)
Q Consensus 359 ~~~~ 362 (482)
++..
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6643
No 63
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=2.8e-18 Score=131.46 Aligned_cols=84 Identities=32% Similarity=0.678 Sum_probs=79.8
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~ 185 (482)
+++|||+|||.++|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccee
Q 011574 186 KNRL 189 (482)
Q Consensus 186 ~~~l 189 (482)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 6543
No 64
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=6.9e-18 Score=133.85 Aligned_cols=83 Identities=19% Similarity=0.287 Sum_probs=76.8
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. ++||||+|.+.++|.+||..||++.|.|+.|+|.++.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 345899999999999999999999999999999999888766 8999999999999999999999999999999999997
Q ss_pred CCCC
Q 011574 359 PQTD 362 (482)
Q Consensus 359 ~~~~ 362 (482)
....
T Consensus 93 ~~~~ 96 (114)
T 2do0_A 93 RALP 96 (114)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 65
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=1.9e-18 Score=146.51 Aligned_cols=84 Identities=25% Similarity=0.451 Sum_probs=78.8
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+.+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+..+
T Consensus 149 a~~~ 152 (165)
T 1rk8_A 149 CFVK 152 (165)
T ss_dssp SEEC
T ss_pred ecCC
Confidence 8654
No 66
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=134.38 Aligned_cols=84 Identities=32% Similarity=0.636 Sum_probs=79.7
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8765
No 67
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-18 Score=133.87 Aligned_cols=85 Identities=33% Similarity=0.504 Sum_probs=80.3
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 011574 183 SETKN 187 (482)
Q Consensus 183 ~~~~~ 187 (482)
+..+.
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 98654
No 68
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=134.09 Aligned_cols=84 Identities=24% Similarity=0.385 Sum_probs=79.7
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+...
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 8754
No 69
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=131.91 Aligned_cols=83 Identities=33% Similarity=0.482 Sum_probs=78.5
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
+...++|||+|||+++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|++.||+..|.|++|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 011574 183 SET 185 (482)
Q Consensus 183 ~~~ 185 (482)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 863
No 70
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7e-18 Score=131.32 Aligned_cols=82 Identities=24% Similarity=0.459 Sum_probs=75.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC--CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEE
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS--GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~--~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~ 356 (482)
...++|||+|||+.+++++|+++|++|| |..|.|+.++. +. ++||||+|.+.++|.+|| .||+..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4458999999999999999999999999 99999998876 34 899999999999999999 8999999999999999
Q ss_pred ccCCCCC
Q 011574 357 AKPQTDK 363 (482)
Q Consensus 357 a~~~~~~ 363 (482)
+.++..+
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9887543
No 71
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=6.1e-19 Score=133.26 Aligned_cols=80 Identities=31% Similarity=0.559 Sum_probs=72.8
Q ss_pred CEEEECCCCCCCCHHHHHHhhccCC--CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 107 SEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~~~f~~~G--~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
.+|||+|||+++|+++|+++|++|| .|.+|+++.++.+|+++|||||+|.+.++|.+|++.||+..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999887
Q ss_pred Cc
Q 011574 185 TK 186 (482)
Q Consensus 185 ~~ 186 (482)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 72
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.8e-18 Score=128.92 Aligned_cols=81 Identities=19% Similarity=0.305 Sum_probs=73.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHc--CCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT--EKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l--~~~~~~g~~l~v~~a 357 (482)
.+.++|||+|||+.+|+++|+++|++||.|..|.|++++ |||||+|.+.++|.+|+..| ++..|.|++|+|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGK----NQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCC----CEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 455899999999999999999999999999999998764 99999999999999999977 467899999999999
Q ss_pred cCCCCCC
Q 011574 358 KPQTDKK 364 (482)
Q Consensus 358 ~~~~~~~ 364 (482)
+++....
T Consensus 89 ~~~~~~~ 95 (101)
T 2cq1_A 89 NHKELKT 95 (101)
T ss_dssp SCSSCCC
T ss_pred CcccCcC
Confidence 8776544
No 73
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=129.38 Aligned_cols=78 Identities=19% Similarity=0.285 Sum_probs=71.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCce--eCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE--IDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~--~~g~~l~v~~a 357 (482)
.+.++|||+|||..+|+++|+++|++||.|++|.|++.+ |||||+|.+.++|.+|+..|++.. |.|++|+|.|+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k----g~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK----RQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 345899999999999999999999999999999998654 999999999999999999998764 88999999999
Q ss_pred cCCC
Q 011574 358 KPQT 361 (482)
Q Consensus 358 ~~~~ 361 (482)
+.+.
T Consensus 95 ~~k~ 98 (100)
T 3r27_A 95 TSQK 98 (100)
T ss_dssp SCSC
T ss_pred cccc
Confidence 8764
No 74
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=4.6e-18 Score=135.04 Aligned_cols=85 Identities=22% Similarity=0.425 Sum_probs=77.5
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++. +. ++||||+|.+.++|.+||..||+..|.|++|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 3458999999999999999999999999999999998874 44 899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 011574 358 KPQTDKK 364 (482)
Q Consensus 358 ~~~~~~~ 364 (482)
.++..+.
T Consensus 103 ~~~~~~~ 109 (115)
T 2cpz_A 103 RSKNDSK 109 (115)
T ss_dssp CCSCCCC
T ss_pred CCCCcCC
Confidence 8776543
No 75
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=132.73 Aligned_cols=84 Identities=26% Similarity=0.452 Sum_probs=77.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++. +. ++||||+|.+.++|.+||..||++.|.|+.|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 4458999999999999999999999999999999998876 34 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 011574 358 KPQTDK 363 (482)
Q Consensus 358 ~~~~~~ 363 (482)
.+....
T Consensus 91 ~~~~~~ 96 (103)
T 2dnm_A 91 RYGRRD 96 (103)
T ss_dssp SSCCSC
T ss_pred CcCCCC
Confidence 876543
No 76
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=131.48 Aligned_cols=84 Identities=32% Similarity=0.491 Sum_probs=79.3
Q ss_pred CCCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeE--------EEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCC
Q 011574 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE--------VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (482)
Q Consensus 101 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~--------v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~ 172 (482)
..+...++|||+|||+++|+++|+++|++||.|.. |+++.++.+++++|||||+|.+.++|.+|++.||+..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 44567899999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cCCeEEEEeecC
Q 011574 173 LKGKTIRCSLSE 184 (482)
Q Consensus 173 ~~g~~l~v~~~~ 184 (482)
|.|+.|+|.+++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 77
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.76 E-value=1.2e-17 Score=129.67 Aligned_cols=79 Identities=32% Similarity=0.683 Sum_probs=72.7
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
...++|||+|||..+|+++|+++|++||.|..|.|++ +||||+|.+.++|.+||..||++.|.|++|+|.++.+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 3458999999999999999999999999999999873 6999999999999999999999999999999999988
Q ss_pred CCCCC
Q 011574 360 QTDKK 364 (482)
Q Consensus 360 ~~~~~ 364 (482)
+..+.
T Consensus 83 ~~~~~ 87 (103)
T 2dgu_A 83 PDQKR 87 (103)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 76544
No 78
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.8e-18 Score=132.04 Aligned_cols=84 Identities=26% Similarity=0.560 Sum_probs=77.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++. +. ++||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 4568999999999999999999999999999999998864 34 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 011574 358 KPQTDK 363 (482)
Q Consensus 358 ~~~~~~ 363 (482)
.++..+
T Consensus 93 ~~~~~~ 98 (103)
T 2cq0_A 93 KPSTNS 98 (103)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 877543
No 79
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.6e-18 Score=131.37 Aligned_cols=82 Identities=27% Similarity=0.612 Sum_probs=77.9
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456889999999999999999999999999999999998 7999999999999999999999999999999999999998
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
.++
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 80
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1e-17 Score=131.27 Aligned_cols=84 Identities=27% Similarity=0.502 Sum_probs=76.7
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCC-C-CCC-CcEEEEEeCCHHHHHHHHHHc-CCceeCCcEEEEE
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG-K-SGK-RDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVV 355 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-~-~~~-kg~afV~f~~~e~A~~A~~~l-~~~~~~g~~l~v~ 355 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.+ + .+. ++||||+|.+.++|.+||..| |+..|.|++|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 45689999999999999999999999999999999988 3 334 899999999999999999999 9999999999999
Q ss_pred EccCCCCC
Q 011574 356 LAKPQTDK 363 (482)
Q Consensus 356 ~a~~~~~~ 363 (482)
++.++...
T Consensus 93 ~a~~~~~~ 100 (107)
T 2cph_A 93 WADSEVTV 100 (107)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99877543
No 81
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=7.5e-18 Score=142.12 Aligned_cols=133 Identities=21% Similarity=0.255 Sum_probs=108.8
Q ss_pred EEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee-------------------cCCcceeeeCCCC
Q 011574 135 EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL-------------------SETKNRLFIGNVP 195 (482)
Q Consensus 135 ~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~-------------------~~~~~~l~v~nLp 195 (482)
+++|+.+.. +++|||||+|.+.++|++|++.+++.......+.+.. ....++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 466777654 6899999999999999999988876433222222211 1234789999999
Q ss_pred CCCCHHHHHHHHhhhCCcccEEEEeeCCCCCCCCcceEEEEeCCHHHHHHHHHHHhccccccCCCCCeeeecCCCCCC
Q 011574 196 KNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP 273 (482)
Q Consensus 196 ~~~t~~~l~~~f~~~G~~i~~~~~~~d~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~ 273 (482)
+.+++++|+++|+.||. |..+.+++++ .++.++|||||.|.+.++|..|+..|++. .+.++.|.|.|+.+....
T Consensus 80 ~~~~~~~l~~~F~~~G~-v~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGR-VGDVYIPRDR-YTKESRGFAFVRFHDKRDAEDAMDAMDGA--VLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHHHHSC-EEEEECCCCS-SCTTSCCEEEEEESBHHHHHHHHHHSTTE--ESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHHhcCC-eEEEEEeecC-CCCccceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEECCCCCCC
Confidence 99999999999999998 9999999984 67899999999999999999999999875 578999999999876543
No 82
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=2.9e-18 Score=136.22 Aligned_cols=84 Identities=31% Similarity=0.563 Sum_probs=79.6
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 35689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred CCcc
Q 011574 184 ETKN 187 (482)
Q Consensus 184 ~~~~ 187 (482)
.++.
T Consensus 103 ~~~~ 106 (115)
T 2cpz_A 103 RSKN 106 (115)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7653
No 83
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=4.3e-18 Score=135.24 Aligned_cols=85 Identities=34% Similarity=0.576 Sum_probs=80.1
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 011574 183 SETKN 187 (482)
Q Consensus 183 ~~~~~ 187 (482)
+..+.
T Consensus 92 a~~~~ 96 (115)
T 2dgo_A 92 ATRKP 96 (115)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 87653
No 84
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=132.43 Aligned_cols=83 Identities=30% Similarity=0.544 Sum_probs=79.0
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEE-EEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEV-RLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v-~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
...++|||+|||+++|+++|+++|++||.|..| +|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+.++
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 8754
No 85
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=133.51 Aligned_cols=84 Identities=31% Similarity=0.593 Sum_probs=79.7
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+..+
T Consensus 89 a~~~ 92 (102)
T 1x5s_A 89 AGKS 92 (102)
T ss_dssp EECC
T ss_pred CCCC
Confidence 8754
No 86
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=131.60 Aligned_cols=85 Identities=19% Similarity=0.380 Sum_probs=77.7
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcC------CceeCCcE
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTE------KYEIDGQV 351 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~------~~~~~g~~ 351 (482)
...++|||+|||+.+|+++|+++|++||.|..|.|+.++.+ . ++||||+|.+.++|.+||..|| +..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 44689999999999999999999999999999999988764 3 8999999999999999999999 99999999
Q ss_pred EEEEEccCCCCCC
Q 011574 352 LEVVLAKPQTDKK 364 (482)
Q Consensus 352 l~v~~a~~~~~~~ 364 (482)
|+|.++.++....
T Consensus 93 l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 93 LKVDLAVTRDEAA 105 (111)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEEECCCCccCC
Confidence 9999998775443
No 87
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=5.7e-18 Score=132.16 Aligned_cols=85 Identities=19% Similarity=0.338 Sum_probs=78.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCC---cEEEEE
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDG---QVLEVV 355 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g---~~l~v~ 355 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. ++||||+|.+.++|.+||..||+..|.| ++|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 346899999999999999999999999999999999888666 8999999999999999999999999988 999999
Q ss_pred EccCCCCCC
Q 011574 356 LAKPQTDKK 364 (482)
Q Consensus 356 ~a~~~~~~~ 364 (482)
++.++..+.
T Consensus 93 ~a~~~~~~~ 101 (105)
T 2dnh_A 93 FADTDKESG 101 (105)
T ss_dssp ESCSSCCCS
T ss_pred ECccCcccC
Confidence 998876543
No 88
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=5.1e-18 Score=126.29 Aligned_cols=79 Identities=18% Similarity=0.335 Sum_probs=73.7
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
.+|||+|||..+++++|+++|++||.|..|.|+.++. +. ++||||+|.+.++|.+|+..||+..|.|++|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 5899999999999999999999999999999988854 34 899999999999999999999999999999999999876
Q ss_pred C
Q 011574 361 T 361 (482)
Q Consensus 361 ~ 361 (482)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 89
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.75 E-value=4e-18 Score=137.86 Aligned_cols=84 Identities=17% Similarity=0.312 Sum_probs=76.8
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+|+++|+++|++||.|..|.|+.++. +. ++||||+|.+.++|.+||..||+..|.|+.|+|.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 4457999999999999999999999999999999998864 34 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 011574 358 KPQTDK 363 (482)
Q Consensus 358 ~~~~~~ 363 (482)
.++..+
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 877543
No 90
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.3e-18 Score=130.73 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=71.6
Q ss_pred cCcceEEEecCCC-CCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCC--ceeCCcEEEEEE
Q 011574 280 SQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK--YEIDGQVLEVVL 356 (482)
Q Consensus 280 ~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~--~~~~g~~l~v~~ 356 (482)
.+.++|||+|||+ .+|+++|+++|++||.|+.|.|++++ +||||+|.+.++|.+||..||+ ..|.|++|+|.+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 3458999999999 99999999999999999999998775 8999999999999999999885 469999999999
Q ss_pred ccCCCC
Q 011574 357 AKPQTD 362 (482)
Q Consensus 357 a~~~~~ 362 (482)
|+....
T Consensus 89 a~~~~~ 94 (102)
T 1x4d_A 89 SQKYKR 94 (102)
T ss_dssp ECCCTT
T ss_pred CCCCCC
Confidence 986543
No 91
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=4.5e-18 Score=123.22 Aligned_cols=73 Identities=23% Similarity=0.305 Sum_probs=69.4
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
.+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..|.|++|+|..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 467899999999999999999999999999999965 5899999999999999999999999999999999987
No 92
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=8e-19 Score=135.31 Aligned_cols=82 Identities=26% Similarity=0.366 Sum_probs=78.2
Q ss_pred CCCEEEECCCCC------CCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCC-eE
Q 011574 105 NGSEVFIGGLPK------DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG-KT 177 (482)
Q Consensus 105 ~~~~v~v~nLp~------~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g-~~ 177 (482)
..++|||+|||+ ++++++|+++|++||.|.+|+|+.++.|++++|||||+|.+.++|.+||+.||+..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357899999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEeecCCc
Q 011574 178 IRCSLSETK 186 (482)
Q Consensus 178 l~v~~~~~~ 186 (482)
|+|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998653
No 93
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=1.2e-18 Score=155.27 Aligned_cols=81 Identities=30% Similarity=0.547 Sum_probs=76.7
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCC--CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G--~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
..++|||+|||+++|+++|+++|++|| .|..|+|+.++.|++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 011574 183 SET 185 (482)
Q Consensus 183 ~~~ 185 (482)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 94
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=4.3e-18 Score=127.95 Aligned_cols=80 Identities=16% Similarity=0.334 Sum_probs=72.8
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
..++|||+|||..+++++|+++|++||.|..|.|+.++. +. ++||||+|.+.++|.+|+..||+..|.|+.|+|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 457999999999999999999999999999999998864 44 8999999999999999999999999999999999997
Q ss_pred CC
Q 011574 359 PQ 360 (482)
Q Consensus 359 ~~ 360 (482)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 95
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=6.2e-18 Score=126.47 Aligned_cols=79 Identities=23% Similarity=0.469 Sum_probs=73.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++... ++||||+|.+.++|.+|+..||+..|.|++|+|.+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 345899999999999999999999999999999998875443 899999999999999999999999999999999998
Q ss_pred c
Q 011574 358 K 358 (482)
Q Consensus 358 ~ 358 (482)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 96
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-18 Score=133.66 Aligned_cols=84 Identities=32% Similarity=0.582 Sum_probs=79.7
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+.+.
T Consensus 89 a~~~ 92 (102)
T 2cqb_A 89 AKPM 92 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 97
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=137.38 Aligned_cols=83 Identities=25% Similarity=0.482 Sum_probs=76.7
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 446899999999999999999999999999999999887643 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 011574 358 KPQTD 362 (482)
Q Consensus 358 ~~~~~ 362 (482)
.++..
T Consensus 120 ~~~~~ 124 (139)
T 1u6f_A 120 ASGHQ 124 (139)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87754
No 98
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=4.2e-18 Score=123.33 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=69.0
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
+.-|||+||++.+|+++|+++|.+||+|..++|... ||||||+|.+.++|.+|++.||+..|.|++|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~----kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN----QGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC----CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467999999999999999999999999999998764 4999999999999999999999999999999999984
No 99
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.6e-18 Score=132.98 Aligned_cols=83 Identities=25% Similarity=0.494 Sum_probs=78.8
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
.++
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 654
No 100
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.4e-18 Score=130.99 Aligned_cols=83 Identities=29% Similarity=0.513 Sum_probs=75.7
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC--C--C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEE
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS--G--K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~--~--~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~ 355 (482)
..++|||+|||..+++++|+++|++||.|..|.|+.++. + . ++||||+|.+.++|.+||..||++.|.|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 357999999999999999999999999999999987765 2 3 8999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 011574 356 LAKPQTDK 363 (482)
Q Consensus 356 ~a~~~~~~ 363 (482)
++.++...
T Consensus 84 ~a~~~~~~ 91 (98)
T 2cpf_A 84 ISERATKP 91 (98)
T ss_dssp CSSCSSCC
T ss_pred EccCCCCC
Confidence 99877543
No 101
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=9.3e-18 Score=128.54 Aligned_cols=81 Identities=21% Similarity=0.425 Sum_probs=75.3
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
.++|||+|||..+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+..||+..|.|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 47999999999999999999999999999999998875 34 89999999999999999999999999999999999987
Q ss_pred CCC
Q 011574 360 QTD 362 (482)
Q Consensus 360 ~~~ 362 (482)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 653
No 102
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=3.5e-18 Score=144.86 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=76.4
Q ss_pred EEeCCHHHHHHHHHHHhccccccCCCCCeeeecCCCC--------------CCCccccccCcceEEEecCCCCCCHHHHH
Q 011574 235 VLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--------------TPDHSAAASQVKALYVKNIPDNTSTEKIK 300 (482)
Q Consensus 235 v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~--------------~~~~~~~~~~~~~l~v~nlp~~~t~~~l~ 300 (482)
..|.+..+|..++..+........++.+...+..... ....+......++|||+|||+.+|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 4555666666666666655444444444333321110 11112223445789999999999999999
Q ss_pred HHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCCCCC
Q 011574 301 ELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364 (482)
Q Consensus 301 ~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 364 (482)
.+|++||.|..|.|+.++.+ . +|||||+|.+.++|.+||..||+..|.|++|.|.|+.++..+.
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999999988643 3 8999999999999999999999999999999999998775443
No 103
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.5e-18 Score=133.77 Aligned_cols=84 Identities=31% Similarity=0.513 Sum_probs=79.6
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhC------CCCcCCe
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH------SKELKGK 176 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~------~~~~~g~ 176 (482)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3467899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEeecCCc
Q 011574 177 TIRCSLSETK 186 (482)
Q Consensus 177 ~l~v~~~~~~ 186 (482)
.|+|.++.++
T Consensus 92 ~l~v~~a~~~ 101 (111)
T 1x4h_A 92 QLKVDLAVTR 101 (111)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 9999998764
No 104
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.3e-18 Score=131.70 Aligned_cols=84 Identities=27% Similarity=0.467 Sum_probs=78.2
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCC---CCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEE
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKE---SGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v 180 (482)
.+.++|||+|||+++|+++|+++|++||.|..|.|+.++. |+.++|||||+|.+.++|.+||+.||+..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999998876 6689999999999999999999999999999999999
Q ss_pred eecCCcc
Q 011574 181 SLSETKN 187 (482)
Q Consensus 181 ~~~~~~~ 187 (482)
.++..+.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9987653
No 105
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.75 E-value=4.1e-18 Score=137.54 Aligned_cols=85 Identities=34% Similarity=0.489 Sum_probs=80.3
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 102 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
.+...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCc
Q 011574 182 LSETK 186 (482)
Q Consensus 182 ~~~~~ 186 (482)
++.++
T Consensus 122 ~a~~~ 126 (129)
T 2kxn_B 122 FSITK 126 (129)
T ss_dssp CCSSS
T ss_pred EecCC
Confidence 98764
No 106
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.74 E-value=7.2e-18 Score=126.65 Aligned_cols=80 Identities=28% Similarity=0.589 Sum_probs=74.9
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|+ .+++..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEEe
Confidence 446789999999999999999999999999999999999999999999999999999999999 4588899999999986
Q ss_pred c
Q 011574 183 S 183 (482)
Q Consensus 183 ~ 183 (482)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 107
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=1.1e-17 Score=130.79 Aligned_cols=84 Identities=24% Similarity=0.426 Sum_probs=76.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCcee---CCcEEEE
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEI---DGQVLEV 354 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~---~g~~l~v 354 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++. +. ++||||+|.+.++|.+||..||+..+ .|++|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 4558999999999999999999999999999999999876 33 89999999999999999999999987 8999999
Q ss_pred EEccCCCCC
Q 011574 355 VLAKPQTDK 363 (482)
Q Consensus 355 ~~a~~~~~~ 363 (482)
.++.++..+
T Consensus 91 ~~a~~~~~~ 99 (106)
T 2dgp_A 91 KPADSESRG 99 (106)
T ss_dssp EECCCCSCC
T ss_pred EECCccccc
Confidence 999876543
No 108
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=131.79 Aligned_cols=84 Identities=24% Similarity=0.396 Sum_probs=76.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccccee--------EEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--------KVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~--------~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g 349 (482)
...++|||+|||..+|+++|+++|++||.|. .|.|+.++. +. ++||||+|.+.++|.+||..||++.|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4568999999999999999999999999999 699998854 44 8999999999999999999999999999
Q ss_pred cEEEEEEccCCCCC
Q 011574 350 QVLEVVLAKPQTDK 363 (482)
Q Consensus 350 ~~l~v~~a~~~~~~ 363 (482)
++|+|.++.++...
T Consensus 93 ~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 93 SKLKVSLARKKPPM 106 (113)
T ss_dssp EECEEECSSCCCCS
T ss_pred CEEEEEECCCCCCC
Confidence 99999999877543
No 109
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5.4e-18 Score=132.08 Aligned_cols=85 Identities=12% Similarity=0.309 Sum_probs=77.8
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhc-ccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCce-eCCcEEEEEE
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQR-HGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE-IDGQVLEVVL 356 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~-~~g~~l~v~~ 356 (482)
...++|||+|||..+|+++|+++|++ ||.|..|.|+.++.+. ++||||+|.+.++|.+||..||+.. |.|++|+|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 34589999999999999999999999 9999999999888665 9999999999999999999999999 9999999999
Q ss_pred ccCCCCCC
Q 011574 357 AKPQTDKK 364 (482)
Q Consensus 357 a~~~~~~~ 364 (482)
+.++..+.
T Consensus 87 a~~~~~~~ 94 (104)
T 2dhg_A 87 AIPKASRV 94 (104)
T ss_dssp CCCCCSCC
T ss_pred ccCCCcCC
Confidence 98775443
No 110
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=1.2e-17 Score=131.51 Aligned_cols=83 Identities=22% Similarity=0.352 Sum_probs=76.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+|+++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+||..||+..|.|++|+|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 4568999999999999999999999999999999998864 33 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 011574 358 KPQTD 362 (482)
Q Consensus 358 ~~~~~ 362 (482)
.++..
T Consensus 104 ~~~~~ 108 (110)
T 1oo0_B 104 FVKGP 108 (110)
T ss_dssp EESSC
T ss_pred ccCCC
Confidence 87653
No 111
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=126.64 Aligned_cols=79 Identities=23% Similarity=0.448 Sum_probs=73.7
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+ . ++||||+|.+.++|.+|++.||+..|.|++|+|.||
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 45689999999999999999999999999999999988763 3 899999999999999999999999999999999998
Q ss_pred c
Q 011574 358 K 358 (482)
Q Consensus 358 ~ 358 (482)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 112
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=128.83 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=72.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCC--ceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK--YEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~--~~~~g~~l~v~~a 357 (482)
...++|||+|||+.+++++|+++|++||.|..|.|++++ +||||+|.+.++|.+|+..|++ ..|.|++|+|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFK----RQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCC----CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 345899999999999999999999999999999998764 9999999999999999998865 4599999999999
Q ss_pred cCCCCCC
Q 011574 358 KPQTDKK 364 (482)
Q Consensus 358 ~~~~~~~ 364 (482)
..+....
T Consensus 89 ~~~~~~~ 95 (104)
T 1wex_A 89 TSKRITR 95 (104)
T ss_dssp SSSSCCC
T ss_pred cCccccC
Confidence 8765543
No 113
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.3e-18 Score=132.91 Aligned_cols=81 Identities=26% Similarity=0.434 Sum_probs=76.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+.+|||||+|.+.++|.+|+..||+..|.|++|+|.++.+
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 45689999999999999999999999999999999988765689999999999999999999999999999999999976
Q ss_pred C
Q 011574 360 Q 360 (482)
Q Consensus 360 ~ 360 (482)
+
T Consensus 107 ~ 107 (109)
T 2err_A 107 R 107 (109)
T ss_dssp S
T ss_pred C
Confidence 5
No 114
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9e-18 Score=130.51 Aligned_cols=81 Identities=30% Similarity=0.524 Sum_probs=76.8
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|++||.|..|+|+.+ ++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 35789999999999999999999999999999999998 7999999999999999999999999999999999999998
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
.++
T Consensus 91 ~~~ 93 (103)
T 2d9p_A 91 QRK 93 (103)
T ss_dssp SSC
T ss_pred ccc
Confidence 765
No 115
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=6.1e-18 Score=129.42 Aligned_cols=80 Identities=24% Similarity=0.402 Sum_probs=75.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. ++||||+|.+.++|.+|+..||++.|.|++|+|.+++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 445899999999999999999999999999999999888766 9999999999999999999999999999999999985
Q ss_pred C
Q 011574 359 P 359 (482)
Q Consensus 359 ~ 359 (482)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 116
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.7e-18 Score=131.97 Aligned_cols=85 Identities=31% Similarity=0.567 Sum_probs=79.6
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEecc-CCCCCccceEEEEeCCHHHHHHHHHHh-CCCCcCCeEEEEe
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD-KESGESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRCS 181 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~-~~~g~~~g~afV~f~~~e~A~~al~~l-~~~~~~g~~l~v~ 181 (482)
...++|||+|||+++|+++|+++|++||.|..|+|+.+ +.+++++|||||+|.+.++|.+||..| |+..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 35688999999999999999999999999999999998 788999999999999999999999999 9999999999999
Q ss_pred ecCCcce
Q 011574 182 LSETKNR 188 (482)
Q Consensus 182 ~~~~~~~ 188 (482)
++.++..
T Consensus 93 ~a~~~~~ 99 (107)
T 2cph_A 93 WADSEVT 99 (107)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9986543
No 117
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=3.4e-18 Score=132.38 Aligned_cols=84 Identities=29% Similarity=0.457 Sum_probs=77.8
Q ss_pred CEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCCc
Q 011574 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~~ 186 (482)
++|||+|||+++|+++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|++.||+..|.|+.|+|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999887 6889999999999999999999999999999999998642
Q ss_pred ----------------ceeeeCCCC
Q 011574 187 ----------------NRLFIGNVP 195 (482)
Q Consensus 187 ----------------~~l~v~nLp 195 (482)
.+|||++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 478898886
No 118
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.5e-17 Score=128.99 Aligned_cols=78 Identities=14% Similarity=0.285 Sum_probs=72.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCC-----cEEEE
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG-----QVLEV 354 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g-----~~l~v 354 (482)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+ +||||+|.+.++|.+||+.||+..|.| ++|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 44589999999999999999999999999999999877 799999999999999999999999999 99999
Q ss_pred EEccCCCC
Q 011574 355 VLAKPQTD 362 (482)
Q Consensus 355 ~~a~~~~~ 362 (482)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (108)
T 1x4c_A 88 KVDGPRSP 95 (108)
T ss_dssp EESSCCSC
T ss_pred EeCCCCCC
Confidence 99988643
No 119
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1.7e-17 Score=128.91 Aligned_cols=81 Identities=22% Similarity=0.347 Sum_probs=74.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+++++|+++|++|| |..|.|+.++. +. +|||||+|.+.++|.+|| .||+..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4568999999999999999999999997 99999998875 34 899999999999999999 79999999999999999
Q ss_pred cCCCC
Q 011574 358 KPQTD 362 (482)
Q Consensus 358 ~~~~~ 362 (482)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87654
No 120
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=1.2e-17 Score=130.26 Aligned_cols=82 Identities=33% Similarity=0.520 Sum_probs=77.4
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCC---eEEEE
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG---KTIRC 180 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g---~~l~v 180 (482)
...++|||+|||+++|+++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|.+||+.||+..|.+ +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 357899999999999999999999999999999999998 69999999999999999999999999999998 99999
Q ss_pred eecCCc
Q 011574 181 SLSETK 186 (482)
Q Consensus 181 ~~~~~~ 186 (482)
.++..+
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 998754
No 121
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.1e-18 Score=131.46 Aligned_cols=78 Identities=27% Similarity=0.456 Sum_probs=74.1
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
..++|||+|||+++|+++|+++|++||.|.+|.|+.++. ++++|||||+|.+.++|.+||. +++..|.|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 457899999999999999999999999999999999987 9999999999999999999997 89999999999999865
No 122
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=127.62 Aligned_cols=80 Identities=20% Similarity=0.336 Sum_probs=74.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+ . ++||||+|.+.++|.+|+..||+..|.|++|+|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 45689999999999999999999999999999999988764 4 899999999999999999999999999999999998
Q ss_pred cC
Q 011574 358 KP 359 (482)
Q Consensus 358 ~~ 359 (482)
++
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 123
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=5.8e-18 Score=132.39 Aligned_cols=85 Identities=29% Similarity=0.592 Sum_probs=79.5
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCc---CCeEEE
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL---KGKTIR 179 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~---~g~~l~ 179 (482)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.||+..+ .++.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred EeecCCcc
Q 011574 180 CSLSETKN 187 (482)
Q Consensus 180 v~~~~~~~ 187 (482)
|.++..+.
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99987653
No 124
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-18 Score=128.83 Aligned_cols=81 Identities=28% Similarity=0.562 Sum_probs=76.8
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred C
Q 011574 184 E 184 (482)
Q Consensus 184 ~ 184 (482)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 125
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=8.6e-18 Score=133.18 Aligned_cols=83 Identities=33% Similarity=0.604 Sum_probs=78.4
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+...
T Consensus 83 a~~~ 86 (116)
T 2fy1_A 83 AKKP 86 (116)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8754
No 126
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=7.1e-18 Score=132.81 Aligned_cols=83 Identities=25% Similarity=0.454 Sum_probs=78.8
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
.++
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 653
No 127
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.1e-18 Score=133.18 Aligned_cols=84 Identities=30% Similarity=0.502 Sum_probs=79.1
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCee--------EEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCC
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVF--------EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~--------~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g 175 (482)
...++|||+|||+++|+++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|.+||+.||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4678999999999999999999999999999 69999998999999999999999999999999999999999
Q ss_pred eEEEEeecCCcc
Q 011574 176 KTIRCSLSETKN 187 (482)
Q Consensus 176 ~~l~v~~~~~~~ 187 (482)
+.|+|.++..+.
T Consensus 93 ~~l~V~~a~~~~ 104 (113)
T 2cpe_A 93 SKLKVSLARKKP 104 (113)
T ss_dssp EECEEECSSCCC
T ss_pred CEEEEEECCCCC
Confidence 999999987653
No 128
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=7.5e-18 Score=127.22 Aligned_cols=80 Identities=28% Similarity=0.512 Sum_probs=76.7
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~ 185 (482)
.++|||+|||+++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 478999999999999999999999999999999999989999999999999999999999 9999999999999999875
Q ss_pred c
Q 011574 186 K 186 (482)
Q Consensus 186 ~ 186 (482)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 129
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=6.4e-18 Score=128.45 Aligned_cols=83 Identities=16% Similarity=0.319 Sum_probs=75.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.+....++||||+|.+.++|.+|+..||+..|.|+.|+|.++.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 34589999999999999999999999999999999875332389999999999999999999999999999999999987
Q ss_pred CCC
Q 011574 360 QTD 362 (482)
Q Consensus 360 ~~~ 362 (482)
...
T Consensus 86 ~~~ 88 (92)
T 2dgv_A 86 ASG 88 (92)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 130
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=8.8e-18 Score=128.53 Aligned_cols=81 Identities=33% Similarity=0.479 Sum_probs=76.4
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|++||.|..|+|+.++. ++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4568999999999999999999999999999999999986 999999999999999999999999999999999999987
Q ss_pred CC
Q 011574 184 ET 185 (482)
Q Consensus 184 ~~ 185 (482)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 131
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=125.91 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=74.2
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC--C-CCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS--G-KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~--~-~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
.++|||+|||..+|+++|+++|++||.|..|.|+.+.. + .++||||+|.+.++|.+|+..||+..|.|+.|+|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 47999999999999999999999999999999988774 2 38999999999999999999999999999999999997
Q ss_pred CCC
Q 011574 359 PQT 361 (482)
Q Consensus 359 ~~~ 361 (482)
++.
T Consensus 84 ~~~ 86 (88)
T 4a8x_A 84 APW 86 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 664
No 132
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=125.60 Aligned_cols=78 Identities=23% Similarity=0.575 Sum_probs=72.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
...++|||+|||..+|+++|+++|++||.|..|.|+ ++||||+|.+.++|.+|+..||+..|.|++|+|.++.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 345899999999999999999999999999999987 38999999999999999999999999999999999987
Q ss_pred CCCC
Q 011574 360 QTDK 363 (482)
Q Consensus 360 ~~~~ 363 (482)
+...
T Consensus 80 ~~~~ 83 (90)
T 2dnq_A 80 KSKA 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 133
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.2e-18 Score=128.69 Aligned_cols=79 Identities=27% Similarity=0.389 Sum_probs=71.9
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCC--CCcCCeEEE
Q 011574 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIR 179 (482)
Q Consensus 102 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~--~~~~g~~l~ 179 (482)
.+...++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|++ ..|.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3557799999999999999999999999999999999875 68999999999999999998864 689999999
Q ss_pred EeecCCc
Q 011574 180 CSLSETK 186 (482)
Q Consensus 180 v~~~~~~ 186 (482)
|.+++.+
T Consensus 86 V~~A~~~ 92 (105)
T 1sjq_A 86 IQFSNHK 92 (105)
T ss_dssp BCCCSSS
T ss_pred EEEcCCC
Confidence 9998764
No 134
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6e-18 Score=130.49 Aligned_cols=78 Identities=21% Similarity=0.331 Sum_probs=73.2
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+||. ++++.|.|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 34799999999999999999999999999999999988765 9999999999999999999 999999999999999765
No 135
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.3e-17 Score=126.75 Aligned_cols=80 Identities=25% Similarity=0.523 Sum_probs=71.7
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
...++|||+|||..+|+++|+++|++||.| .|+.+..+. ++||||+|.+.++|.+||..||++.|.|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 456899999999999999999999999987 556555555 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 011574 359 PQTD 362 (482)
Q Consensus 359 ~~~~ 362 (482)
++..
T Consensus 90 ~~~~ 93 (101)
T 2fc9_A 90 PRGS 93 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7743
No 136
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=6.3e-18 Score=134.96 Aligned_cols=82 Identities=30% Similarity=0.545 Sum_probs=77.4
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 011574 183 SE 184 (482)
Q Consensus 183 ~~ 184 (482)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 137
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=6.3e-18 Score=130.36 Aligned_cols=83 Identities=19% Similarity=0.424 Sum_probs=78.6
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCee-EEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeE----E
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVF-EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT----I 178 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~-~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~----l 178 (482)
...++|||+|||+++|+++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4578999999999999999999999999999 9999999999999999999999999999999999999999999 9
Q ss_pred EEeecCCc
Q 011574 179 RCSLSETK 186 (482)
Q Consensus 179 ~v~~~~~~ 186 (482)
+|.++...
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99988754
No 138
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=1.2e-17 Score=129.73 Aligned_cols=81 Identities=23% Similarity=0.504 Sum_probs=76.8
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|++|| |..|+|+.++.+++++|||||+|.+.++|.+|| .||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3568999999999999999999999997 999999999999999999999999999999999 89999999999999998
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
.+.
T Consensus 91 ~~~ 93 (103)
T 2dng_A 91 EGR 93 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 139
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=130.82 Aligned_cols=82 Identities=16% Similarity=0.294 Sum_probs=75.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..||++.|.|+.|+|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 44589999999999999999999999999999999988763 4 899999999999999999999999999999999999
Q ss_pred cCCC
Q 011574 358 KPQT 361 (482)
Q Consensus 358 ~~~~ 361 (482)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8764
No 140
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.9e-18 Score=131.40 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=73.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcC--CceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~--~~~~~g~~l~v~~a 357 (482)
.+.++|||+|||+.+|+++|+++|++||.|+.|.|+.++ |||||+|.+.++|.+|+..|+ +..|.|++|+|.|+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k----G~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK----NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG----TEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC----CEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 345799999999999999999999999999999998764 999999999999999999887 46899999999999
Q ss_pred cCCCCCC
Q 011574 358 KPQTDKK 364 (482)
Q Consensus 358 ~~~~~~~ 364 (482)
+++..+.
T Consensus 105 ~~k~~~~ 111 (119)
T 2ad9_A 105 NHKELKT 111 (119)
T ss_dssp SSSSCCC
T ss_pred cCCCCCc
Confidence 8776554
No 141
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.73 E-value=1.4e-17 Score=130.36 Aligned_cols=82 Identities=26% Similarity=0.372 Sum_probs=77.4
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 102 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.+. +++++|||||+|.+.++|.+||+.||+..|.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999998 79999999999999999999999999999999999999
Q ss_pred ecC
Q 011574 182 LSE 184 (482)
Q Consensus 182 ~~~ 184 (482)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 874
No 142
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=7.5e-18 Score=140.49 Aligned_cols=82 Identities=24% Similarity=0.456 Sum_probs=77.4
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCC--CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G--~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
..++|||+|||+++|+++|+++|+.|| .|..|+|+.++.+|+++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+..+
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8643
No 143
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=130.80 Aligned_cols=82 Identities=21% Similarity=0.386 Sum_probs=75.2
Q ss_pred cCcceEEEecCCCCCCHHHHH---HHHhcccceeEEEcCCCCCC----C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcE
Q 011574 280 SQVKALYVKNIPDNTSTEKIK---ELFQRHGEVTKVVMPPGKSG----K-RDFGFIHYAERSSALKAVKDTEKYEIDGQV 351 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~---~~F~~~G~v~~v~i~~~~~~----~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~ 351 (482)
...++|||+|||+.+++++|+ ++|++||.|..|.|+.++.. . +|||||+|.+.++|.+||..||++.|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 345799999999999999999 99999999999999888752 2 689999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 011574 352 LEVVLAKPQT 361 (482)
Q Consensus 352 l~v~~a~~~~ 361 (482)
|+|.+|.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998774
No 144
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=3.6e-18 Score=131.64 Aligned_cols=79 Identities=22% Similarity=0.314 Sum_probs=74.4
Q ss_pred cceEEEecCCC------CCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCC-cEE
Q 011574 282 VKALYVKNIPD------NTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDG-QVL 352 (482)
Q Consensus 282 ~~~l~v~nlp~------~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g-~~l 352 (482)
.++|||+|||. .+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+||..||+..|.| ++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 47999999999 999999999999999999999999887 44 9999999999999999999999999999 999
Q ss_pred EEEEccCC
Q 011574 353 EVVLAKPQ 360 (482)
Q Consensus 353 ~v~~a~~~ 360 (482)
+|.++.++
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99999764
No 145
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=4.5e-18 Score=130.14 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=75.9
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
..++|||+|||+++|+++|+++|++||.|..+.++.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999999875
No 146
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=9.7e-18 Score=126.33 Aligned_cols=82 Identities=20% Similarity=0.438 Sum_probs=76.7
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCC-ccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE-SKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~-~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
..++|||+|||+++|+++|+++|++||.|..|.++.+..++. ++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999887666 8999999999999999999999999999999999988
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 147
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=132.88 Aligned_cols=82 Identities=26% Similarity=0.560 Sum_probs=77.4
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.+++ .|.|+.|+|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 3568999999999999999999999999999999999999999999999999999999999999998 899999999998
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
...
T Consensus 94 ~~~ 96 (116)
T 2cqd_A 94 YLG 96 (116)
T ss_dssp TTT
T ss_pred ccC
Confidence 653
No 148
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=129.71 Aligned_cols=80 Identities=25% Similarity=0.496 Sum_probs=76.4
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCC-CCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES-GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~-g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
..++|||+|||+++|+++|+++|+.|| |..|.|+.++.+ ++++|||||+|.+.++|.+|| .||+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 568999999999999999999999999 999999999988 999999999999999999999 99999999999999998
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
.++
T Consensus 92 ~~~ 94 (104)
T 1wi8_A 92 DQA 94 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 149
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.6e-17 Score=123.52 Aligned_cols=77 Identities=21% Similarity=0.415 Sum_probs=71.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
...++|||+|||..+++++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..||++.|.|+.|+|.++.+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4458999999999999999999999999999999974 5999999999999999999999999999999999987
Q ss_pred CCC
Q 011574 360 QTD 362 (482)
Q Consensus 360 ~~~ 362 (482)
+..
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 150
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=130.48 Aligned_cols=83 Identities=25% Similarity=0.376 Sum_probs=78.2
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhcc-CCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCC-cCCeEEEE
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEP-IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKGKTIRC 180 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~-~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~-~~g~~l~v 180 (482)
+...++|||+|||+++|+++|+++|++ ||.|..|+|+.+. +++++|||||+|.+.++|.+||+.|++.. |.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 346789999999999999999999999 9999999999998 89999999999999999999999999999 99999999
Q ss_pred eecCCc
Q 011574 181 SLSETK 186 (482)
Q Consensus 181 ~~~~~~ 186 (482)
.++..+
T Consensus 85 ~~a~~~ 90 (104)
T 2dhg_A 85 SVAIPK 90 (104)
T ss_dssp CBCCCC
T ss_pred EEccCC
Confidence 998754
No 151
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=124.33 Aligned_cols=78 Identities=24% Similarity=0.290 Sum_probs=71.3
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCC--cCCeEEEE
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTIRC 180 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~--~~g~~l~v 180 (482)
.+++++|||+|||+++|+++|+++|++||.|.+|++++. +|+|||+|.+.++|.+|++.|++.. |.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 346789999999999999999999999999999999853 6899999999999999999999876 78999999
Q ss_pred eecCCc
Q 011574 181 SLSETK 186 (482)
Q Consensus 181 ~~~~~~ 186 (482)
.+++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 998764
No 152
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=129.96 Aligned_cols=82 Identities=20% Similarity=0.421 Sum_probs=75.8
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||+..|.|++|+|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 456899999999999999999999999999999999886543 899999999999999999999999999999999999
Q ss_pred cCCC
Q 011574 358 KPQT 361 (482)
Q Consensus 358 ~~~~ 361 (482)
.++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8764
No 153
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.72 E-value=1.3e-17 Score=134.75 Aligned_cols=84 Identities=25% Similarity=0.489 Sum_probs=79.1
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+..+
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8643
No 154
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=1.9e-17 Score=139.11 Aligned_cols=84 Identities=23% Similarity=0.367 Sum_probs=79.7
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+.+.
T Consensus 116 a~~~ 119 (156)
T 1h2v_Z 116 DAGF 119 (156)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 8753
No 155
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.9e-17 Score=126.88 Aligned_cols=82 Identities=23% Similarity=0.504 Sum_probs=76.2
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|+|+.+.. .++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999998865 3899999999999999999999999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+.++
T Consensus 90 a~~~ 93 (103)
T 2cq3_A 90 ATAR 93 (103)
T ss_dssp CCSS
T ss_pred cccC
Confidence 8765
No 156
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=5.9e-18 Score=123.20 Aligned_cols=75 Identities=32% Similarity=0.675 Sum_probs=71.9
Q ss_pred EEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 108 ~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
+|||+|||+++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|++ +++..|.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 49999999999999999999999999999999999899999999999999999999996 8999999999999874
No 157
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=2e-17 Score=129.50 Aligned_cols=79 Identities=27% Similarity=0.419 Sum_probs=74.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
...++|||+|||..+|+++|+++|++||.|..|.|+.++.+. ++||||+|.+.++|.+||..||+..|.|++|+|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 446899999999999999999999999999999999888666 8999999999999999999999999999999999985
No 158
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=7e-18 Score=129.87 Aligned_cols=83 Identities=19% Similarity=0.290 Sum_probs=77.7
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|++||.|..+.++.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34688999999999999999999999999999989998889999999999999999999999999999999999999998
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 643
No 159
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.5e-17 Score=130.92 Aligned_cols=82 Identities=22% Similarity=0.450 Sum_probs=75.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+|+++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+||.. +++.|.|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4468999999999999999999999999999999998865 33 89999999999999999996 999999999999999
Q ss_pred cCCCC
Q 011574 358 KPQTD 362 (482)
Q Consensus 358 ~~~~~ 362 (482)
.++..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 88754
No 160
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=2.2e-17 Score=125.43 Aligned_cols=81 Identities=26% Similarity=0.448 Sum_probs=76.1
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|++||.|..|+++.+ +++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999874 6899999999999999999999999999999999999998
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
.+.
T Consensus 84 ~~~ 86 (92)
T 2dgv_A 84 RNA 86 (92)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 161
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=129.28 Aligned_cols=81 Identities=25% Similarity=0.365 Sum_probs=73.9
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 102 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
.+...++|||+|||+++|+++|+++|++||. +.|+|+.++ +++++|||||+|.+.++|.+|| .+|+..|.++.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 3456789999999999999999999999994 599999998 7999999999999999999999 579999999999998
Q ss_pred ecCC
Q 011574 182 LSET 185 (482)
Q Consensus 182 ~~~~ 185 (482)
++..
T Consensus 88 ~~~~ 91 (102)
T 1wez_A 88 LNST 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 8764
No 162
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=8e-18 Score=131.29 Aligned_cols=83 Identities=27% Similarity=0.528 Sum_probs=78.3
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||.. ++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999988 99999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+.++
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 8765
No 163
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.72 E-value=1.6e-17 Score=130.16 Aligned_cols=84 Identities=31% Similarity=0.532 Sum_probs=74.9
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 102 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
.+...++|||+|||+++|+++|+++|+.||.|..|+|+.++.+++++|||||+|.+.++|.+||+.+ +..|.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3446789999999999999999999999999999999999999999999999999999999999775 588999999999
Q ss_pred ecCCc
Q 011574 182 LSETK 186 (482)
Q Consensus 182 ~~~~~ 186 (482)
++.++
T Consensus 100 ~a~~~ 104 (109)
T 2rs2_A 100 VAFPR 104 (109)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 98754
No 164
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4e-17 Score=128.14 Aligned_cols=80 Identities=19% Similarity=0.415 Sum_probs=74.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++ +||||+|.+.++|.+||..||+..|.|++|+|.|+.+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK----GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC----CEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 345899999999999999999999999999999998874 9999999999999999999999999999999999987
Q ss_pred CCCC
Q 011574 360 QTDK 363 (482)
Q Consensus 360 ~~~~ 363 (482)
+...
T Consensus 99 ~~~~ 102 (109)
T 1x4g_A 99 SPDM 102 (109)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7543
No 165
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.72 E-value=3e-18 Score=129.43 Aligned_cols=80 Identities=21% Similarity=0.313 Sum_probs=68.7
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccc--ceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
.+|||+|||+.+|+++|+++|++|| .|..|.|+.++. +. +|||||+|.+.++|.+||+.||+..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999998864 44 9999999999999999999999999999999999998
Q ss_pred CCCC
Q 011574 359 PQTD 362 (482)
Q Consensus 359 ~~~~ 362 (482)
++..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7643
No 166
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=129.22 Aligned_cols=82 Identities=23% Similarity=0.482 Sum_probs=74.8
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccC-CCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK-ESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
....++|||+|||+++|+++|+++|++|| |..|+|+.++ .+++++|||||+|.+.++|.+|| .|++..|.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 44679999999999999999999999999 9999999998 58999999999999999999999 899999999999999
Q ss_pred ecCCc
Q 011574 182 LSETK 186 (482)
Q Consensus 182 ~~~~~ 186 (482)
++.++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98764
No 167
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.3e-18 Score=124.21 Aligned_cols=76 Identities=33% Similarity=0.556 Sum_probs=73.0
Q ss_pred CEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
++|||+|||+++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|++.++ ..|.|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999999999999999999999999999999988 9999999999876
No 168
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=129.31 Aligned_cols=83 Identities=20% Similarity=0.433 Sum_probs=75.8
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.. . ++||||+|.+.++|.+||.. |++.|.|+.|+|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 45689999999999999999999999999999999988653 4 89999999999999999997 999999999999999
Q ss_pred cCCCCC
Q 011574 358 KPQTDK 363 (482)
Q Consensus 358 ~~~~~~ 363 (482)
.++...
T Consensus 93 ~~~~~~ 98 (105)
T 2dh8_A 93 TPRGMQ 98 (105)
T ss_dssp CCSSCC
T ss_pred cCCCCC
Confidence 877543
No 169
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=130.21 Aligned_cols=81 Identities=32% Similarity=0.680 Sum_probs=77.8
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~ 185 (482)
.++|||+|||+++|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.++..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 47899999999999999999999999999999999988999999999999999999999999999999999999999876
Q ss_pred c
Q 011574 186 K 186 (482)
Q Consensus 186 ~ 186 (482)
.
T Consensus 88 ~ 88 (104)
T 1p1t_A 88 E 88 (104)
T ss_dssp T
T ss_pred c
Confidence 4
No 170
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=136.21 Aligned_cols=84 Identities=27% Similarity=0.490 Sum_probs=79.7
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
+...++|||+|||.++|+++|+++|+.||.|..|+|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+..+
T Consensus 119 a~~~ 122 (139)
T 1u6f_A 119 AASG 122 (139)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8764
No 171
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=128.10 Aligned_cols=78 Identities=19% Similarity=0.333 Sum_probs=72.8
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCCC
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 362 (482)
++|||+|||..+|+++|+++|++||.|..|.|+.+ .++||||+|.+.++|.+|+..||+..|.|+.|+|.++.++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 47999999999999999999999999999999887 459999999999999999999999999999999999988754
Q ss_pred C
Q 011574 363 K 363 (482)
Q Consensus 363 ~ 363 (482)
.
T Consensus 78 ~ 78 (101)
T 2hvz_A 78 R 78 (101)
T ss_dssp S
T ss_pred c
Confidence 3
No 172
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.9e-17 Score=124.74 Aligned_cols=77 Identities=23% Similarity=0.386 Sum_probs=72.1
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeC--CcEEEEEEcc
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID--GQVLEVVLAK 358 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~--g~~l~v~~a~ 358 (482)
..++|||+|||..+|+++|+++|++||.|..|.|..+ ++||||+|.+.++|.+|+..||+..|. |++|+|.|+.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 4479999999999999999999999999999999876 489999999999999999999999999 9999999998
Q ss_pred CCC
Q 011574 359 PQT 361 (482)
Q Consensus 359 ~~~ 361 (482)
++.
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 173
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.8e-17 Score=125.89 Aligned_cols=79 Identities=28% Similarity=0.492 Sum_probs=73.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
...++|||+|||..+|+++|+++|++||.|..|.|.+++ +||||+|.+.++|.+|+..||+..|.|++|+|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k----g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK----GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT----TEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC----CEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 455899999999999999999999999999999998764 9999999999999999999999999999999999987
Q ss_pred CCC
Q 011574 360 QTD 362 (482)
Q Consensus 360 ~~~ 362 (482)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpj_A 89 SAS 91 (99)
T ss_dssp CSC
T ss_pred CCC
Confidence 643
No 174
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=1.3e-16 Score=128.32 Aligned_cols=84 Identities=29% Similarity=0.442 Sum_probs=77.6
Q ss_pred ccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 279 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
....++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||+..|.|++|+|.+|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 3556899999999999999999999999999999999888655 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 011574 358 KPQTD 362 (482)
Q Consensus 358 ~~~~~ 362 (482)
.+...
T Consensus 112 ~~~~~ 116 (124)
T 2kt5_A 112 ASQID 116 (124)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 87654
No 175
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=127.56 Aligned_cols=82 Identities=15% Similarity=0.255 Sum_probs=75.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccccee-EEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcE----E
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT-KVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQV----L 352 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~----l 352 (482)
...++|||+|||..+++++|+++|++||.|. .|.|+.++.. . ++||||+|.+.++|.+|+..||+..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4458999999999999999999999999999 9999988743 4 899999999999999999999999999999 9
Q ss_pred EEEEccCCC
Q 011574 353 EVVLAKPQT 361 (482)
Q Consensus 353 ~v~~a~~~~ 361 (482)
+|.|+.+..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999997653
No 176
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=125.79 Aligned_cols=80 Identities=24% Similarity=0.280 Sum_probs=75.1
Q ss_pred CCCCEEEECCCCCCCCHHHHH----HhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEE
Q 011574 104 PNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~----~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~ 179 (482)
.+.++|||+|||+++|+++|+ ++|++||.|.+|+|+.++.+ +|||||+|.+.++|.+|++.||+..|.|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356899999999999999999 99999999999999998775 88999999999999999999999999999999
Q ss_pred EeecCCc
Q 011574 180 CSLSETK 186 (482)
Q Consensus 180 v~~~~~~ 186 (482)
|.++++.
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9998764
No 177
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=124.39 Aligned_cols=81 Identities=20% Similarity=0.435 Sum_probs=76.0
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
+...++|||+|||+++|+++|+++|+.| .|..|+|+.+ .+++++|||||+|.+.++|.+||+ ||+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3467899999999999999999999999 9999999999 679999999999999999999998 999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+..+
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8754
No 178
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.6e-17 Score=127.05 Aligned_cols=81 Identities=19% Similarity=0.414 Sum_probs=75.4
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|++||.|..|+|+.+.. .++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 4578999999999999999999999999999999999864 36899999999999999999999999999999999998
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
...
T Consensus 91 ~~~ 93 (103)
T 2cqi_A 91 TTP 93 (103)
T ss_dssp CCT
T ss_pred CCC
Confidence 764
No 179
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-17 Score=126.34 Aligned_cols=85 Identities=35% Similarity=0.561 Sum_probs=78.5
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|++.++ +|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 346789999999999999999999999999999999754 68999999999999999999999999999999999
Q ss_pred cCCcceeeeCC
Q 011574 183 SETKNRLFIGN 193 (482)
Q Consensus 183 ~~~~~~l~v~n 193 (482)
+.++..+.+++
T Consensus 86 a~~~~~~~~g~ 96 (99)
T 2cpj_A 86 ACHSASLTSGP 96 (99)
T ss_dssp SSCCSCCCCCC
T ss_pred cCCCCCCCCCC
Confidence 99988877764
No 180
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=127.22 Aligned_cols=79 Identities=24% Similarity=0.328 Sum_probs=71.6
Q ss_pred CCCEEEECCCCC-CCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCC--CcCCeEEEEe
Q 011574 105 NGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK--ELKGKTIRCS 181 (482)
Q Consensus 105 ~~~~v~v~nLp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~--~~~g~~l~v~ 181 (482)
.+++|||+|||+ ++|+++|+++|++||.|.+|+|+++ ++||||+|.+.++|.+|++.|++. .|.|++|.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 578999999999 9999999999999999999999865 579999999999999999998864 4999999999
Q ss_pred ecCCccee
Q 011574 182 LSETKNRL 189 (482)
Q Consensus 182 ~~~~~~~l 189 (482)
+++....|
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x4d_A 88 LSQKYKRI 95 (102)
T ss_dssp EECCCTTS
T ss_pred ECCCCCCC
Confidence 99866544
No 181
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=126.77 Aligned_cols=79 Identities=19% Similarity=0.383 Sum_probs=73.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeE--------EEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK--------VVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g 349 (482)
...++|||+|||..+++++|+++|++||.|.. |.|+.++. +. +|||||+|.+.++|.+|++.||+..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45689999999999999999999999999999 99988865 44 8999999999999999999999999999
Q ss_pred cEEEEEEcc
Q 011574 350 QVLEVVLAK 358 (482)
Q Consensus 350 ~~l~v~~a~ 358 (482)
+.|+|.+|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999984
No 182
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.71 E-value=1.6e-17 Score=133.98 Aligned_cols=82 Identities=20% Similarity=0.345 Sum_probs=76.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+||..||+..|.|++|+|.|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999988753 3 899999999999999999999999999999999999
Q ss_pred cCCC
Q 011574 358 KPQT 361 (482)
Q Consensus 358 ~~~~ 361 (482)
.++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8764
No 183
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.5e-17 Score=129.10 Aligned_cols=81 Identities=25% Similarity=0.398 Sum_probs=76.4
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|.+||.|..|+|+.++ +++++|||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 356899999999999999999999999999999999987 4999999999999999999999999999999999999998
Q ss_pred CC
Q 011574 184 ET 185 (482)
Q Consensus 184 ~~ 185 (482)
..
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 184
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=3.2e-17 Score=123.72 Aligned_cols=78 Identities=19% Similarity=0.465 Sum_probs=72.5
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
.++|||+|||..+++++|+++|++||.|..|.|+.++. +. ++||||+|.+.++|.+|+ .||+..|.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 47999999999999999999999999999999998863 34 899999999999999999 8999999999999999976
Q ss_pred C
Q 011574 360 Q 360 (482)
Q Consensus 360 ~ 360 (482)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 185
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.8e-18 Score=132.87 Aligned_cols=82 Identities=11% Similarity=0.312 Sum_probs=75.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|| .||++.|.|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34589999999999999999999999999999999988863 4 899999999999999999 89999999999999999
Q ss_pred cCCCC
Q 011574 358 KPQTD 362 (482)
Q Consensus 358 ~~~~~ 362 (482)
.++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 87654
No 186
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.2e-17 Score=124.74 Aligned_cols=82 Identities=26% Similarity=0.486 Sum_probs=74.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+||. +++.|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 4458999999999999999999999999999999998875 44 8999999999999999998 478999999999999
Q ss_pred cCCCCC
Q 011574 358 KPQTDK 363 (482)
Q Consensus 358 ~~~~~~ 363 (482)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cqg_A 91 NSKQSQ 96 (103)
T ss_dssp CTTCCC
T ss_pred CCCCcC
Confidence 887553
No 187
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.9e-17 Score=125.43 Aligned_cols=81 Identities=21% Similarity=0.326 Sum_probs=74.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeE-EEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~-v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||+.+|+++|+++|++||.|.. |.|+.+..+. +|||||+|.+.++|.+||.. |+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 44589999999999999999999999999997 8898886666 99999999999999999996 999999999999998
Q ss_pred cCCC
Q 011574 358 KPQT 361 (482)
Q Consensus 358 ~~~~ 361 (482)
.++.
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7654
No 188
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=128.87 Aligned_cols=80 Identities=21% Similarity=0.430 Sum_probs=72.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCC--CCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEE
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK--SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~ 356 (482)
...++|||+|||..+++++|+++|++|| |..|.|+.++ .+. +|||||+|.+.++|.+|| .||+..|.|+.|+|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4568999999999999999999999999 9999999886 344 999999999999999999 7999999999999999
Q ss_pred ccCCC
Q 011574 357 AKPQT 361 (482)
Q Consensus 357 a~~~~ 361 (482)
+.++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 97653
No 189
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.7e-18 Score=133.24 Aligned_cols=81 Identities=12% Similarity=0.164 Sum_probs=74.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccce-eEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v-~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||+.+|+++|+++|++||.| ..|.|+.++.+. +|||||+|.+.++|.+||.. |++.|.|++|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 445899999999999999999999999999 889999888666 99999999999999999996 999999999999999
Q ss_pred cCCC
Q 011574 358 KPQT 361 (482)
Q Consensus 358 ~~~~ 361 (482)
.++.
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8665
No 190
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-17 Score=128.14 Aligned_cols=79 Identities=15% Similarity=0.316 Sum_probs=71.8
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
...++|||+|||+.+|+++|+++|++||.| .|.|+.++.+. +|||||+|.+.++|.+||. +|++.|.++.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 445899999999999999999999999954 99998888666 9999999999999999995 79999999999999987
Q ss_pred CC
Q 011574 359 PQ 360 (482)
Q Consensus 359 ~~ 360 (482)
+.
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 191
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.3e-17 Score=122.95 Aligned_cols=80 Identities=14% Similarity=0.309 Sum_probs=74.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
...++|||+|||+.+++++|+++|++| .|..|.|+.+..+. +|||||+|.+.++|.+||. ||+..|.|+.|+|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 345899999999999999999999999 99999999886666 9999999999999999999 99999999999999998
Q ss_pred CCC
Q 011574 359 PQT 361 (482)
Q Consensus 359 ~~~ 361 (482)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 763
No 192
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=4.2e-17 Score=130.13 Aligned_cols=79 Identities=22% Similarity=0.381 Sum_probs=73.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++. +. ++||||+|.+.++|.+||+.||+..|.|++|+|.|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 4568999999999999999999999999999999998865 34 899999999999999999999999999999999997
Q ss_pred c
Q 011574 358 K 358 (482)
Q Consensus 358 ~ 358 (482)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 4
No 193
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.4e-17 Score=127.46 Aligned_cols=81 Identities=22% Similarity=0.416 Sum_probs=74.6
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|.|..+ +.++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999654 56899999999999999999999999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
++..
T Consensus 96 a~~~ 99 (109)
T 1x4a_A 96 PRSG 99 (109)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8764
No 194
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=6.7e-17 Score=127.10 Aligned_cols=96 Identities=17% Similarity=0.348 Sum_probs=78.4
Q ss_pred CCCCCeeeecCCCCCCCccccccCcceEEEecCCCC-CCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHH
Q 011574 258 DGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336 (482)
Q Consensus 258 ~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~ 336 (482)
.+..+.+..+.+..... .....++|||+|||.. +++++|+++|++||.|..|.| .++||||+|.+.++|.
T Consensus 6 ~g~~~~~~~s~~~~~~~---~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKND---PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CSCCCCCCCCCSCCSCC---CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHH
T ss_pred CCcccccccCCCCCCCC---CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHH
Confidence 34555555544332221 2234589999999999 999999999999999999998 3589999999999999
Q ss_pred HHHHHcCCceeCCcEEEEEEccCCCC
Q 011574 337 KAVKDTEKYEIDGQVLEVVLAKPQTD 362 (482)
Q Consensus 337 ~A~~~l~~~~~~g~~l~v~~a~~~~~ 362 (482)
+||..||+..|.|+.|+|.++.++..
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HHHHHHTTCEETTEECCEEESCCCCS
T ss_pred HHHHHcCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999976543
No 195
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-16 Score=122.51 Aligned_cols=77 Identities=40% Similarity=0.618 Sum_probs=71.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcc--cceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+|+++|+++|++| |.|..|.+. ++||||+|.+.++|.+||..||+..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 456899999999999999999999999 999999875 379999999999999999999999999999999999
Q ss_pred cCCCC
Q 011574 358 KPQTD 362 (482)
Q Consensus 358 ~~~~~ 362 (482)
.++..
T Consensus 87 ~~~~~ 91 (99)
T 2cpd_A 87 KPVDK 91 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 196
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-17 Score=127.30 Aligned_cols=81 Identities=31% Similarity=0.383 Sum_probs=74.6
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeE-EEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE-VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~-v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
...++|||+|||+++|+++|+++|++||.|.. |.|+.+ .+++++|||||+|.+.++|.+||+. ++..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 35689999999999999999999999999987 888888 7799999999999999999999976 99999999999988
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+...
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 7654
No 197
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=5.2e-17 Score=130.75 Aligned_cols=84 Identities=24% Similarity=0.371 Sum_probs=78.8
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|+|+.+. +++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3467899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cCCcc
Q 011574 183 SETKN 187 (482)
Q Consensus 183 ~~~~~ 187 (482)
+....
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 87643
No 198
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=5.4e-17 Score=121.82 Aligned_cols=77 Identities=26% Similarity=0.525 Sum_probs=70.7
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||+.+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+. ++++.|+|+.|+|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 4558999999999999999999999999999999998865 44 8999999999999999997 6888999999999986
No 199
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=127.81 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=71.4
Q ss_pred cCcceEEEecCCCC-CCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcC--CceeCCcEEEEEE
Q 011574 280 SQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGQVLEVVL 356 (482)
Q Consensus 280 ~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~--~~~~~g~~l~v~~ 356 (482)
...++|||+|||+. +|+++|+++|++||.|..|.|++. |+||||+|.+.++|.+||..|| +..|.|++|+|.+
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 44689999999998 999999999999999999999765 4999999999999999999886 4569999999999
Q ss_pred ccCCCCC
Q 011574 357 AKPQTDK 363 (482)
Q Consensus 357 a~~~~~~ 363 (482)
+..+...
T Consensus 99 a~~~~~~ 105 (112)
T 1x4f_A 99 SEKYKKL 105 (112)
T ss_dssp ECSCSSS
T ss_pred Ccccccc
Confidence 9876543
No 200
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=7.2e-17 Score=126.35 Aligned_cols=82 Identities=21% Similarity=0.442 Sum_probs=73.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+|+++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+||..+ +..|+|+.|+|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 4458999999999999999999999999999999999875 34 999999999999999999976 59999999999999
Q ss_pred cCCCC
Q 011574 358 KPQTD 362 (482)
Q Consensus 358 ~~~~~ 362 (482)
.++..
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87754
No 201
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.8e-17 Score=125.87 Aligned_cols=82 Identities=32% Similarity=0.597 Sum_probs=76.1
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||. ++..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 356889999999999999999999999999999999999999999999999999999999996 577899999999998
Q ss_pred CCcc
Q 011574 184 ETKN 187 (482)
Q Consensus 184 ~~~~ 187 (482)
.++.
T Consensus 91 ~~~~ 94 (103)
T 2cqg_A 91 NSKQ 94 (103)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 7653
No 202
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=130.71 Aligned_cols=80 Identities=31% Similarity=0.449 Sum_probs=76.5
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~ 185 (482)
.++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|| .||+..|.|+.|.|.++..
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 478999999999999999999999999999999999999999999999999999999999 9999999999999998764
Q ss_pred c
Q 011574 186 K 186 (482)
Q Consensus 186 ~ 186 (482)
+
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 3
No 203
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=4.8e-17 Score=126.61 Aligned_cols=77 Identities=18% Similarity=0.271 Sum_probs=70.3
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccc-ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
.++|||+|||+.+++++|+++|++|| .|..|.|.... .+|||||+|.+.++|.+||..||+..|.|++|+|.++..+
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~--~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD--FDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS--SSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC--CCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 47999999999999999999999999 89999996532 3799999999999999999999999999999999998644
No 204
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.8e-17 Score=121.42 Aligned_cols=77 Identities=21% Similarity=0.455 Sum_probs=71.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
...++|||+|||..+|+++|+++|++||.|..|.|++ +||||+|.+.++|.+||..||+..|.|++|+|.++.+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 4458999999999999999999999999999999974 5899999999999999999999999999999999987
Q ss_pred CCC
Q 011574 360 QTD 362 (482)
Q Consensus 360 ~~~ 362 (482)
+..
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 205
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-17 Score=132.01 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=76.0
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCe-eEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDV-FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v-~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
+...++|||+|||+++|+++|+++|+.||.| ..|+|+.++ +++++|||||+|.+.++|.+||+. |+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3456899999999999999999999999999 899999998 899999999999999999999966 9999999999999
Q ss_pred ecCCc
Q 011574 182 LSETK 186 (482)
Q Consensus 182 ~~~~~ 186 (482)
++..+
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98643
No 206
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.7e-17 Score=129.45 Aligned_cols=85 Identities=21% Similarity=0.336 Sum_probs=77.9
Q ss_pred CCCEEEECCCCCCCCHHHHH---HhhccCCCeeEEEEeccCCCC---CccceEEEEeCCHHHHHHHHHHhCCCCcCCeEE
Q 011574 105 NGSEVFIGGLPKDASEEDLR---DLCEPIGDVFEVRLMKDKESG---ESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~---~~f~~~G~v~~v~~~~~~~~g---~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l 178 (482)
..++|||+|||+++|+++|+ ++|++||.|..|.|+.+..++ +++|||||+|.+.++|.+||+.||+..|.|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 46789999999999999999 999999999999999887754 556999999999999999999999999999999
Q ss_pred EEeecCCccee
Q 011574 179 RCSLSETKNRL 189 (482)
Q Consensus 179 ~v~~~~~~~~l 189 (482)
+|.++.++.+.
T Consensus 94 ~V~~a~~k~~~ 104 (111)
T 2cpi_A 94 KASLGTTKYCS 104 (111)
T ss_dssp EEESCCCCSCS
T ss_pred EEEeccccccc
Confidence 99999877643
No 207
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.4e-17 Score=126.13 Aligned_cols=78 Identities=14% Similarity=0.275 Sum_probs=72.4
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
...+|||+|||+.+|+++|+++|++| .|..|.|+.++.++ +|||||+|.+.++|.+|| .+|++.|+||.|.|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 34799999999999999999999999 89999999988776 999999999999999999 5999999999999999865
Q ss_pred C
Q 011574 360 Q 360 (482)
Q Consensus 360 ~ 360 (482)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 208
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=1.8e-17 Score=134.16 Aligned_cols=81 Identities=25% Similarity=0.293 Sum_probs=75.9
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCC---eeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEE
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~---v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~ 179 (482)
....++|||+|||+++|+++|+++|++||. |..|+|+.++. |+++|||||+|.+.++|.+||+ +|+..|.||.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 346789999999999999999999999999 89999999988 9999999999999999999998 999999999999
Q ss_pred EeecCC
Q 011574 180 CSLSET 185 (482)
Q Consensus 180 v~~~~~ 185 (482)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 998753
No 209
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=5.4e-17 Score=126.26 Aligned_cols=81 Identities=25% Similarity=0.447 Sum_probs=72.2
Q ss_pred CcceEEEecCCCCC------CHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCc-EEE
Q 011574 281 QVKALYVKNIPDNT------STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ-VLE 353 (482)
Q Consensus 281 ~~~~l~v~nlp~~~------t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~-~l~ 353 (482)
..++|||+|||+.+ |+++|+++|++||.|..|.|++.....+|||||+|.+.++|.+||..|||..|.|+ +|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 35799999999999 78999999999999999999843322389999999999999999999999999998 999
Q ss_pred EEEccCCC
Q 011574 354 VVLAKPQT 361 (482)
Q Consensus 354 v~~a~~~~ 361 (482)
|.++....
T Consensus 94 V~~a~~~~ 101 (105)
T 2nlw_A 94 VNLFTDFD 101 (105)
T ss_dssp EECSCCCC
T ss_pred EEEcchHh
Confidence 99997553
No 210
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=134.75 Aligned_cols=82 Identities=21% Similarity=0.395 Sum_probs=77.5
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeE--EEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCC----CcCCeEE
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFE--VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK----ELKGKTI 178 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~--v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~----~~~g~~l 178 (482)
..++|||+|||+++|+++|+++|++||.|.. |+|++++.|++++|||||+|.+. +|.+|+..||+. .|.|+.|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 4678999999999999999999999999977 99999999999999999999999 999999999999 9999999
Q ss_pred EEeecCCcc
Q 011574 179 RCSLSETKN 187 (482)
Q Consensus 179 ~v~~~~~~~ 187 (482)
.|.++.+..
T Consensus 101 ~V~~a~~~~ 109 (131)
T 2m2b_A 101 NVEFAKGSK 109 (131)
T ss_dssp CCEECCCSC
T ss_pred EEEECCCCC
Confidence 999998653
No 211
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.9e-17 Score=127.36 Aligned_cols=81 Identities=26% Similarity=0.574 Sum_probs=75.5
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCc--------CCe
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL--------KGK 176 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~--------~g~ 176 (482)
..++|||+|||+++|+++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|.+||+.||+..| .++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 56899999999999999999999999999999999998 799999999999999999999999999999 577
Q ss_pred EEEEeecCCc
Q 011574 177 TIRCSLSETK 186 (482)
Q Consensus 177 ~l~v~~~~~~ 186 (482)
+|.|.++.+.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8888887653
No 212
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=125.47 Aligned_cols=83 Identities=25% Similarity=0.382 Sum_probs=74.6
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccc-eeEEEcC-CCCCC-C-CcEEEEEeCCHHHHHHHHHHcC--CceeCCcEEEE
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGE-VTKVVMP-PGKSG-K-RDFGFIHYAERSSALKAVKDTE--KYEIDGQVLEV 354 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~-v~~v~i~-~~~~~-~-kg~afV~f~~~e~A~~A~~~l~--~~~~~g~~l~v 354 (482)
..++|||+|||..+|+++|+++|++||. |..|.|+ .++.. . +|||||+|.+.++|.+|+..|| +..|.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4579999999999999999999999998 9999998 56553 3 8999999999999999999996 58999999999
Q ss_pred EEccCCCCC
Q 011574 355 VLAKPQTDK 363 (482)
Q Consensus 355 ~~a~~~~~~ 363 (482)
.|+.++...
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999887654
No 213
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.7e-17 Score=127.41 Aligned_cols=81 Identities=25% Similarity=0.471 Sum_probs=71.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccce----eEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEE
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEV----TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v----~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v 354 (482)
...++|||+|||..+|+++|+++|++||.| ..+.+. .+. ++||||+|.+.++|.+||..||+..|.|++|+|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 456899999999999999999999999998 455554 233 799999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 011574 355 VLAKPQTDK 363 (482)
Q Consensus 355 ~~a~~~~~~ 363 (482)
.++.++..+
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpx_A 100 EFGKNKKQR 108 (115)
T ss_dssp EECCCCSCC
T ss_pred EEccCCCCC
Confidence 999877543
No 214
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.6e-17 Score=128.53 Aligned_cols=85 Identities=26% Similarity=0.446 Sum_probs=78.3
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCC-eeEEEEe-ccCCCCCccceEEEEeCCHHHHHHHHHHhC--CCCcCCeEE
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLM-KDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTI 178 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~-v~~v~~~-~~~~~g~~~g~afV~f~~~e~A~~al~~l~--~~~~~g~~l 178 (482)
....++|||+|||+++|+++|+++|.+||. |..|.++ .+..+++++|||||+|.+.++|.+|++.|+ +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346789999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred EEeecCCcc
Q 011574 179 RCSLSETKN 187 (482)
Q Consensus 179 ~v~~~~~~~ 187 (482)
+|.++.++.
T Consensus 85 ~V~~a~~~~ 93 (109)
T 2dis_A 85 AVDWAEPEI 93 (109)
T ss_dssp EEEESCSSC
T ss_pred EEEEcCCCC
Confidence 999998653
No 215
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=2.5e-17 Score=119.83 Aligned_cols=73 Identities=25% Similarity=0.472 Sum_probs=68.5
Q ss_pred eEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 284 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
+|||+|||..+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+. ||++.|+|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999998874 44 8999999999999999998 9999999999999875
No 216
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-17 Score=129.87 Aligned_cols=81 Identities=28% Similarity=0.514 Sum_probs=76.8
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~ 185 (482)
.++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+. ++..|.|+.|.|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 47899999999999999999999999999999999999999999999999999999999976 99999999999999876
Q ss_pred cc
Q 011574 186 KN 187 (482)
Q Consensus 186 ~~ 187 (482)
+.
T Consensus 106 ~~ 107 (116)
T 1x4b_A 106 RE 107 (116)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 217
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=2.5e-17 Score=130.96 Aligned_cols=79 Identities=27% Similarity=0.325 Sum_probs=74.8
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCC---eeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEE
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~---v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v 180 (482)
...++|||+|||+++|+++|+++|+.||. |..|+|+.++. ++++|||||+|.+.++|.+||+ +|+..|.|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 45789999999999999999999999998 89999999987 9999999999999999999997 9999999999999
Q ss_pred eecC
Q 011574 181 SLSE 184 (482)
Q Consensus 181 ~~~~ 184 (482)
.++.
T Consensus 93 ~~a~ 96 (118)
T 2db1_A 93 FKSH 96 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9875
No 218
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.4e-17 Score=120.85 Aligned_cols=75 Identities=23% Similarity=0.469 Sum_probs=70.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHc-CCceeCCcEEEEEEcc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLAK 358 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l-~~~~~~g~~l~v~~a~ 358 (482)
...++|||+|||..+++++|+++|++||.|..|.|++++ +||||+|.+.++|.+|+..| ++..|.|++|+|.|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k----g~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ----QCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG----TEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC----CEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 456899999999999999999999999999999998754 99999999999999999998 9999999999999984
No 219
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.3e-17 Score=126.82 Aligned_cols=78 Identities=26% Similarity=0.400 Sum_probs=71.4
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhC--CCCcCCeEEEE
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTIRC 180 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~--~~~~~g~~l~v 180 (482)
.+.+++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|+ +..|.|++|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 346789999999999999999999999999999999875 7899999999999999999887 46899999999
Q ss_pred eecCCc
Q 011574 181 SLSETK 186 (482)
Q Consensus 181 ~~~~~~ 186 (482)
.+++.+
T Consensus 102 ~~a~~k 107 (119)
T 2ad9_A 102 QFSNHK 107 (119)
T ss_dssp EECSSS
T ss_pred EEccCC
Confidence 998764
No 220
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2e-17 Score=128.84 Aligned_cols=84 Identities=26% Similarity=0.534 Sum_probs=76.5
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++.. . +|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34589999999999999999999999999999999988643 3 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 011574 358 KPQTDK 363 (482)
Q Consensus 358 ~~~~~~ 363 (482)
.++..+
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 877543
No 221
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=3.6e-17 Score=132.89 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=75.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeE--EEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCc----eeCCcE
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK--VVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKY----EIDGQV 351 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~--v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~----~~~g~~ 351 (482)
...++|||+|||+.+|+++|+++|++||.|.. |+|+.++. +. +|||||+|.+. +|.+||..||+. .|.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45689999999999999999999999999976 99999984 44 99999999999 999999999999 999999
Q ss_pred EEEEEccCCCC
Q 011574 352 LEVVLAKPQTD 362 (482)
Q Consensus 352 l~v~~a~~~~~ 362 (482)
|+|.++.++..
T Consensus 100 l~V~~a~~~~~ 110 (131)
T 2m2b_A 100 INVEFAKGSKR 110 (131)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999987644
No 222
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=122.12 Aligned_cols=77 Identities=23% Similarity=0.371 Sum_probs=69.9
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhC--CCCcCCeEEEEe
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTIRCS 181 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~--~~~~~g~~l~v~ 181 (482)
+..++|||+|||+++|+++|+++|++||.|..|.++++ +|||||+|.+.++|.+|++.|+ +..|.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 35689999999999999999999999999999998864 7899999999999999999764 677999999999
Q ss_pred ecCCc
Q 011574 182 LSETK 186 (482)
Q Consensus 182 ~~~~~ 186 (482)
++..+
T Consensus 87 ~a~~~ 91 (101)
T 2cq1_A 87 YSNHK 91 (101)
T ss_dssp ECSCS
T ss_pred EcCcc
Confidence 98754
No 223
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.1e-17 Score=126.86 Aligned_cols=82 Identities=23% Similarity=0.499 Sum_probs=76.1
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||.++|+++|+++|++||.|..|+++.+. +.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999885 45899999999999999999999999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8754
No 224
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=1.5e-17 Score=135.50 Aligned_cols=82 Identities=29% Similarity=0.471 Sum_probs=78.4
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
..++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+++
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 56889999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred Cc
Q 011574 185 TK 186 (482)
Q Consensus 185 ~~ 186 (482)
..
T Consensus 126 ~~ 127 (135)
T 2lea_A 126 YG 127 (135)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 225
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.69 E-value=3e-17 Score=127.71 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=74.2
Q ss_pred CCCEEEECCCCCCC------CHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCe-E
Q 011574 105 NGSEVFIGGLPKDA------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK-T 177 (482)
Q Consensus 105 ~~~~v~v~nLp~~~------t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~-~ 177 (482)
..++|||+|||+.+ |+++|+++|++||.|..|.|+ ..+|+++|||||+|.+.++|.+|+..||+..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 789999999999999999988 46799999999999999999999999999999998 9
Q ss_pred EEEeecCCc
Q 011574 178 IRCSLSETK 186 (482)
Q Consensus 178 l~v~~~~~~ 186 (482)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998754
No 226
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.5e-17 Score=125.94 Aligned_cols=81 Identities=20% Similarity=0.248 Sum_probs=72.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||+.+++++|+++|++||.|..+.++.++. +. ++||||+|.+.++|.+||..||+..|.|++|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3458999999999999999999999999998776665543 34 899999999999999999999999999999999998
Q ss_pred cCC
Q 011574 358 KPQ 360 (482)
Q Consensus 358 ~~~ 360 (482)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 654
No 227
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=5.7e-17 Score=135.17 Aligned_cols=80 Identities=18% Similarity=0.287 Sum_probs=73.4
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccc--ceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEE
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~ 356 (482)
..++|||+|||+.+|+++|+++|++|| .|..|.|+.++. +. +|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 347999999999999999999999999 999999998865 44 99999999999999999999999999999999999
Q ss_pred ccCC
Q 011574 357 AKPQ 360 (482)
Q Consensus 357 a~~~ 360 (482)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9754
No 228
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=6.8e-18 Score=127.67 Aligned_cols=80 Identities=31% Similarity=0.654 Sum_probs=74.1
Q ss_pred CEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCCc
Q 011574 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~~ 186 (482)
++|||+|||.++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.+ |.+|+..||+..|.|+.|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999998764
Q ss_pred c
Q 011574 187 N 187 (482)
Q Consensus 187 ~ 187 (482)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 229
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=7.9e-17 Score=128.81 Aligned_cols=81 Identities=19% Similarity=0.354 Sum_probs=72.0
Q ss_pred cCcceEEEecCCCCCCHHHHH----HHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEE
Q 011574 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~----~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v 354 (482)
...++|||+|||+.+++++|+ ++|++||.|..|.|... +. +|||||+|.+.++|.+||..|||..|.|++|+|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~--~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS--DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC--CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC--CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 345799999999999999876 69999999999988653 33 899999999999999999999999999999999
Q ss_pred EEccCCCC
Q 011574 355 VLAKPQTD 362 (482)
Q Consensus 355 ~~a~~~~~ 362 (482)
.|+..+..
T Consensus 105 ~~a~~~~~ 112 (127)
T 2a3j_A 105 TFSETPQS 112 (127)
T ss_dssp EECCCCCH
T ss_pred EEccCcch
Confidence 99987643
No 230
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.7e-17 Score=126.00 Aligned_cols=77 Identities=26% Similarity=0.339 Sum_probs=72.5
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~ 185 (482)
.++|||+|||+++|+++|+++|+.| .|..|+|+.++. |+++|||||+|.+.++|.+|| .+|+..|.||.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 899999999976 999999999999999999999 7899999999999988764
No 231
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=1.2e-17 Score=135.67 Aligned_cols=80 Identities=14% Similarity=0.303 Sum_probs=72.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
...++|||+|||+.+|+++|+++|++|| |+.|.|+.++.++ +|||||+|.+.++|.+|| .+|+..|.|+.|+|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 3457999999999999999999999999 6799999988876 999999999999999999 699999999999999987
Q ss_pred CCC
Q 011574 359 PQT 361 (482)
Q Consensus 359 ~~~ 361 (482)
++.
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 653
No 232
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=122.41 Aligned_cols=73 Identities=19% Similarity=0.382 Sum_probs=68.0
Q ss_pred CCEEEECCCCCCC------CHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCe-EE
Q 011574 106 GSEVFIGGLPKDA------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK-TI 178 (482)
Q Consensus 106 ~~~v~v~nLp~~~------t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~-~l 178 (482)
+++|||+|||+.+ |+++|+++|++||.|..|.++ +.+++++|||||+|.+.++|.+|++.||+..|.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 789999999999999999987 45799999999999999999999999999999999 88
Q ss_pred EE
Q 011574 179 RC 180 (482)
Q Consensus 179 ~v 180 (482)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 233
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6.6e-17 Score=126.94 Aligned_cols=77 Identities=23% Similarity=0.329 Sum_probs=71.4
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
..++|||+|||+.+|+++|+++|++||.|..|.|+..+ +||||+|.+.++|.+||..||+..|.|++|.|.|+...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~----g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG----ITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSS----SCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC----CEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 34799999999999999999999999999999998644 89999999999999999999999999999999999764
Q ss_pred C
Q 011574 361 T 361 (482)
Q Consensus 361 ~ 361 (482)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 3
No 234
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.6e-17 Score=126.68 Aligned_cols=84 Identities=26% Similarity=0.433 Sum_probs=74.1
Q ss_pred CCCCCEEEECCCCCC-CCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhC--CCCcCCeEEE
Q 011574 103 PPNGSEVFIGGLPKD-ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTIR 179 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~-~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~--~~~~~g~~l~ 179 (482)
...+++|||+|||++ +|+++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|++.|+ +..|.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345789999999998 99999999999999999999974 37899999999999999999886 4569999999
Q ss_pred EeecCCcceeeeC
Q 011574 180 CSLSETKNRLFIG 192 (482)
Q Consensus 180 v~~~~~~~~l~v~ 192 (482)
|.++..+..+..+
T Consensus 96 V~~a~~~~~~~~~ 108 (112)
T 1x4f_A 96 VDLSEKYKKLVSG 108 (112)
T ss_dssp EEEECSCSSSSCC
T ss_pred EEECccccccccC
Confidence 9999887766543
No 235
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=6e-17 Score=128.74 Aligned_cols=81 Identities=14% Similarity=0.221 Sum_probs=74.8
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccc---eeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEE
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE---VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~---v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~ 355 (482)
...++|||+|||+.+|+++|+++|++||. |..|+|+.++.++ +|||||+|.+.++|.+||. ||++.|.|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 44589999999999999999999999999 8999999888777 9999999999999999999 99999999999999
Q ss_pred EccCCC
Q 011574 356 LAKPQT 361 (482)
Q Consensus 356 ~a~~~~ 361 (482)
++..+.
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 986543
No 236
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=2.1e-17 Score=126.35 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=70.6
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
..++|||+|||+.+|+++|+++|++||.|..+.++.++.. . ++||||+|.+.++|.+||..||++.|.|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 3479999999999999999999999999988777765543 4 8999999999999999999999999999999999985
Q ss_pred C
Q 011574 359 P 359 (482)
Q Consensus 359 ~ 359 (482)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 237
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.1e-17 Score=124.26 Aligned_cols=77 Identities=21% Similarity=0.376 Sum_probs=70.9
Q ss_pred cCcceEEEecCCC-CCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 280 SQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 280 ~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
...++|||+|||. .+++++|+++|++||.|..|.|. ++||||+|.+.++|.+|+..||+..|.|++|+|.++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 4458999999998 99999999999999999999984 4899999999999999999999999999999999998
Q ss_pred CCCC
Q 011574 359 PQTD 362 (482)
Q Consensus 359 ~~~~ 362 (482)
++..
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7654
No 238
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.69 E-value=7.7e-17 Score=132.99 Aligned_cols=81 Identities=33% Similarity=0.604 Sum_probs=76.5
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 011574 183 S 183 (482)
Q Consensus 183 ~ 183 (482)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 239
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=8.7e-17 Score=125.50 Aligned_cols=77 Identities=26% Similarity=0.448 Sum_probs=71.7
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
...++|||+|||..+|+++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..||+..|.|+.|+|.++.+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 456899999999999999999999999999999987 48999999999999999999999999999999999987
Q ss_pred CCC
Q 011574 360 QTD 362 (482)
Q Consensus 360 ~~~ 362 (482)
+..
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 654
No 240
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.69 E-value=5.9e-17 Score=130.49 Aligned_cols=80 Identities=23% Similarity=0.486 Sum_probs=76.7
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~ 185 (482)
.++|||+|||+++|+++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|| .||+..|.|+.|+|.+++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 589999999999999999999999999999999999889999999999999999999999 8999999999999999875
Q ss_pred c
Q 011574 186 K 186 (482)
Q Consensus 186 ~ 186 (482)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 241
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=126.79 Aligned_cols=81 Identities=17% Similarity=0.318 Sum_probs=74.8
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCcee--------CCc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEI--------DGQ 350 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~--------~g~ 350 (482)
...++|||+|||..+|+++|+++|++||.|..|.|+.++.+. ++||||+|.+.++|.+||..||+..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 445899999999999999999999999999999999988655 89999999999999999999999999 678
Q ss_pred EEEEEEccCC
Q 011574 351 VLEVVLAKPQ 360 (482)
Q Consensus 351 ~l~v~~a~~~ 360 (482)
+|.|.|+.++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999754
No 242
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=2e-16 Score=120.94 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=70.3
Q ss_pred cCcceEEEecCCC-CCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 280 SQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 280 ~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
...++|||+|||. .+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..||+..|.|++|+|.+++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 4568999999998 99999999999999999999984 4899999999999999999999999999999999997
Q ss_pred CC
Q 011574 359 PQ 360 (482)
Q Consensus 359 ~~ 360 (482)
++
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 243
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=5.8e-17 Score=125.40 Aligned_cols=76 Identities=22% Similarity=0.385 Sum_probs=70.7
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
..++|||+|||..+++++|+++|++||.|..|.|... ++||||+|.+.++|.+|+..||+..|.|+.|+|.|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE----KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 3579999999999999999999999999999999844 499999999999999999999999999999999999764
No 244
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=123.16 Aligned_cols=80 Identities=29% Similarity=0.521 Sum_probs=69.5
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+|+++|+++|++|+ .|.|+.++. +. ++||||+|.+.++|.+||..||++.|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4568999999999999999999999884 455555543 34 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 011574 358 KPQTD 362 (482)
Q Consensus 358 ~~~~~ 362 (482)
.++..
T Consensus 90 ~~~~~ 94 (102)
T 2fc8_A 90 KPKGE 94 (102)
T ss_dssp CCCCS
T ss_pred cCCCC
Confidence 87654
No 245
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=123.67 Aligned_cols=80 Identities=29% Similarity=0.529 Sum_probs=72.8
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.| +++.+ .+++++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3467899999999999999999999999977 56665 5689999999999999999999999999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+.++
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8765
No 246
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2e-17 Score=133.02 Aligned_cols=81 Identities=22% Similarity=0.316 Sum_probs=75.2
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|+.||.|..+.++.+..+++++|||||+|.+.++|.+||+ ||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 456899999999999999999999999999987777777789999999999999999999998 9999999999999988
Q ss_pred CC
Q 011574 184 ET 185 (482)
Q Consensus 184 ~~ 185 (482)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 247
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=3.4e-17 Score=120.96 Aligned_cols=73 Identities=26% Similarity=0.524 Sum_probs=65.8
Q ss_pred ceEEEecCCCCC------CHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCc-EEEEE
Q 011574 283 KALYVKNIPDNT------STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ-VLEVV 355 (482)
Q Consensus 283 ~~l~v~nlp~~~------t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~-~l~v~ 355 (482)
++|||+|||..+ |+++|+++|++||.|..|.|++.....+|||||+|.+.++|.+|+..|||..|.|+ +|+|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 689999999999 77999999999999999999843333389999999999999999999999999999 88763
No 248
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=1e-16 Score=120.40 Aligned_cols=84 Identities=26% Similarity=0.383 Sum_probs=77.0
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|++| .|..|++. +++|||||+|.+.++|.+|++.||+..+.|++|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 356889999999999999999999999 99999984 56899999999999999999999999999999999999
Q ss_pred CCcceeeeCCC
Q 011574 184 ETKNRLFIGNV 194 (482)
Q Consensus 184 ~~~~~l~v~nL 194 (482)
.....+.+.|.
T Consensus 76 ~~~~~~~~~n~ 86 (88)
T 1wg1_A 76 PTDALLCSGPS 86 (88)
T ss_dssp CCCCCCSCCCT
T ss_pred CCCceEecCCC
Confidence 98877777663
No 249
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.68 E-value=3.4e-17 Score=132.48 Aligned_cols=80 Identities=13% Similarity=0.213 Sum_probs=74.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccc---eeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEE
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE---VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~---v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~ 355 (482)
...++|||+|||+.+|+++|+++|++||. |..|.|+.++.++ +|||||+|.+.++|.+||. ||+..|+|++|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 34589999999999999999999999999 8899999888777 9999999999999999999 99999999999999
Q ss_pred EccCC
Q 011574 356 LAKPQ 360 (482)
Q Consensus 356 ~a~~~ 360 (482)
++.++
T Consensus 121 ~a~~~ 125 (136)
T 2hgl_A 121 KSHRT 125 (136)
T ss_dssp ECCHH
T ss_pred ECChH
Confidence 98654
No 250
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6e-17 Score=123.21 Aligned_cols=78 Identities=21% Similarity=0.464 Sum_probs=69.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccc-eeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCC-ceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE-VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK-YEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~-~~~~g~~l~v~~a 357 (482)
...++|||+|||..+|+++|+++|++||. |..+.+. .++||||+|.+.++|.+|+..||+ ..|.|++|+|.++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 34589999999999999999999999999 6655552 259999999999999999999999 9999999999999
Q ss_pred cCCCC
Q 011574 358 KPQTD 362 (482)
Q Consensus 358 ~~~~~ 362 (482)
.++..
T Consensus 81 ~~~~~ 85 (93)
T 2cqh_A 81 VSKKL 85 (93)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 87644
No 251
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=122.51 Aligned_cols=77 Identities=25% Similarity=0.273 Sum_probs=69.8
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCC--CcCCeEEEEe
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK--ELKGKTIRCS 181 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~--~~~g~~l~v~ 181 (482)
+..++|||+|||+++|+++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|++.|++. .|.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45689999999999999999999999999999999764 689999999999999999988654 5899999999
Q ss_pred ecCCc
Q 011574 182 LSETK 186 (482)
Q Consensus 182 ~~~~~ 186 (482)
++..+
T Consensus 87 ~a~~~ 91 (104)
T 1wex_A 87 YSTSK 91 (104)
T ss_dssp ECSSS
T ss_pred EccCc
Confidence 99764
No 252
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=119.51 Aligned_cols=77 Identities=35% Similarity=0.628 Sum_probs=71.6
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
+...++|||+|||+++|+++|+++|++||.|..|.++ ++||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4467899999999999999999999999999999997 57999999999999999999999999999999999
Q ss_pred cCCcc
Q 011574 183 SETKN 187 (482)
Q Consensus 183 ~~~~~ 187 (482)
+..+.
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87653
No 253
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.3e-16 Score=123.46 Aligned_cols=82 Identities=24% Similarity=0.467 Sum_probs=74.4
Q ss_pred hhcCCCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeE
Q 011574 98 QLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (482)
Q Consensus 98 ~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~ 177 (482)
.....+...++|||+|||.++|+++|+++|++||.|..|++. +++|||||+|.+.++|.+|+..||+..|.|+.
T Consensus 19 ~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 19 IIRSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp HHTTSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred hhhcCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 344455667999999999999999999999999999999997 34789999999999999999999999999999
Q ss_pred EEEeecCC
Q 011574 178 IRCSLSET 185 (482)
Q Consensus 178 l~v~~~~~ 185 (482)
|+|.++++
T Consensus 93 l~V~~a~~ 100 (101)
T 2la4_A 93 LRTGWGKE 100 (101)
T ss_dssp CCCCBCCC
T ss_pred EEEEeccC
Confidence 99998865
No 254
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.68 E-value=7e-17 Score=125.68 Aligned_cols=81 Identities=22% Similarity=0.366 Sum_probs=72.8
Q ss_pred CCCCCCCEEEECCCCCCCCHHHHHHhhccCC-CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEE
Q 011574 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (482)
Q Consensus 101 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~ 179 (482)
..++..++|||+|||+++|+++|+++|++|| .|..|.+... .++|||||+|.+.++|.+||+.||+..|.|+.|+
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4556778999999999999999999999999 8999998643 4789999999999999999999999999999999
Q ss_pred EeecCC
Q 011574 180 CSLSET 185 (482)
Q Consensus 180 v~~~~~ 185 (482)
|.++..
T Consensus 99 V~~a~~ 104 (111)
T 2jvr_A 99 VERDDN 104 (111)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 998864
No 255
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=127.25 Aligned_cols=81 Identities=21% Similarity=0.416 Sum_probs=73.7
Q ss_pred CCCCEEEECCCCCCCCHHHHH----HhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEE
Q 011574 104 PNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~----~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~ 179 (482)
...++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|.+|+..||+..|.|+.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 457899999999999999876 6999999999998854 578999999999999999999999999999999999
Q ss_pred EeecCCcc
Q 011574 180 CSLSETKN 187 (482)
Q Consensus 180 v~~~~~~~ 187 (482)
|.++..+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998654
No 256
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=2.7e-17 Score=119.66 Aligned_cols=75 Identities=25% Similarity=0.539 Sum_probs=71.2
Q ss_pred EEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 108 ~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
+|||+|||+++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|++ +++..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999996 5899999999999864
No 257
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=120.73 Aligned_cols=78 Identities=18% Similarity=0.350 Sum_probs=67.9
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
..++|||+|||+.+|+++|+++|++||.|..|.+ ++...+ ||||+|.+.++|.+||. ||++.|.|+.|+|.++.++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~--~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVM--DKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEE--CSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE--cCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 3479999999999999999999999999999833 332223 99999999999999999 9999999999999988765
Q ss_pred CC
Q 011574 361 TD 362 (482)
Q Consensus 361 ~~ 362 (482)
..
T Consensus 83 ~~ 84 (94)
T 2e5g_A 83 EF 84 (94)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 258
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.68 E-value=1.6e-16 Score=127.93 Aligned_cols=80 Identities=20% Similarity=0.455 Sum_probs=73.3
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
..++|||+|||..+|+++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|| .||++.|.|+.|+|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 458999999999999999999999999999999988753 33 899999999999999999 799999999999999997
Q ss_pred CCC
Q 011574 359 PQT 361 (482)
Q Consensus 359 ~~~ 361 (482)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 259
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.68 E-value=3.3e-17 Score=128.00 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=75.5
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCC---eeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEE
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~---v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~ 179 (482)
....++|||+|||+++|+++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+||+ +|+..|.|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 346789999999999999999999999998 89999999988 9999999999999999999997 999999999999
Q ss_pred EeecCC
Q 011574 180 CSLSET 185 (482)
Q Consensus 180 v~~~~~ 185 (482)
|.++..
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 988764
No 260
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4e-17 Score=119.46 Aligned_cols=74 Identities=20% Similarity=0.459 Sum_probs=69.3
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
++|||+|||..+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+..++ ..|+|++|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999999999999999998875 33 8999999999999999999999 9999999999987
No 261
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-16 Score=129.06 Aligned_cols=79 Identities=24% Similarity=0.476 Sum_probs=72.6
Q ss_pred ccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEE
Q 011574 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (482)
Q Consensus 279 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~ 356 (482)
....++|||+|||..+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+..||+..|.|++|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999998865 33 89999999999999999999999999999999998
Q ss_pred c
Q 011574 357 A 357 (482)
Q Consensus 357 a 357 (482)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 262
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=2.5e-17 Score=124.56 Aligned_cols=79 Identities=28% Similarity=0.534 Sum_probs=70.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
++|||+|||..+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.+ |.+|+..||+..|.|++|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5899999999999999999999999999999998875 33 899999999999 99999999999999999999999876
Q ss_pred CC
Q 011574 361 TD 362 (482)
Q Consensus 361 ~~ 362 (482)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 263
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=122.75 Aligned_cols=82 Identities=32% Similarity=0.587 Sum_probs=75.0
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
+...++|||+|||+++|+++|+++|+.| ..|.++.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3467899999999999999999999987 4678888888899999999999999999999999999999999999999
Q ss_pred cCCcc
Q 011574 183 SETKN 187 (482)
Q Consensus 183 ~~~~~ 187 (482)
++++.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 97653
No 264
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=123.84 Aligned_cols=80 Identities=25% Similarity=0.618 Sum_probs=74.6
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 102 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
.....++|||+|||.++|+++|+++|++||.|..|+|+.+ +|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4557799999999999999999999999999999999876 6899999999999999999999999999999999
Q ss_pred ecCCcc
Q 011574 182 LSETKN 187 (482)
Q Consensus 182 ~~~~~~ 187 (482)
++.++.
T Consensus 95 ~a~~~~ 100 (109)
T 1x4g_A 95 WGKESP 100 (109)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 998654
No 265
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=123.33 Aligned_cols=77 Identities=27% Similarity=0.438 Sum_probs=71.9
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCC-----eEE
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG-----KTI 178 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g-----~~l 178 (482)
...++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999876 799999999999999999999999999 999
Q ss_pred EEeecCCcc
Q 011574 179 RCSLSETKN 187 (482)
Q Consensus 179 ~v~~~~~~~ 187 (482)
+|.++.++.
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999987643
No 266
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=120.09 Aligned_cols=79 Identities=16% Similarity=0.314 Sum_probs=72.4
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEE-EcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v-~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
..++|||+|||+.+++++|+++|++||.|..| .|+.++.. +.|||+|.+.++|.+||..||+..|.|++|+|.++.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 45899999999999999999999999999999 58877654 4599999999999999999999999999999999988
Q ss_pred CC
Q 011574 360 QT 361 (482)
Q Consensus 360 ~~ 361 (482)
+.
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 267
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=122.03 Aligned_cols=77 Identities=17% Similarity=0.346 Sum_probs=69.9
Q ss_pred CcceEEE--ecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCcee-----CCcEEE
Q 011574 281 QVKALYV--KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI-----DGQVLE 353 (482)
Q Consensus 281 ~~~~l~v--~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~-----~g~~l~ 353 (482)
+.++||| +||++.+++++|+++|++||.|..|.|+.+ |+||||+|.+.++|.+|+..|||+.| .|++|.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 3578999 669999999999999999999999999865 49999999999999999999999998 789999
Q ss_pred EEEccCCC
Q 011574 354 VVLAKPQT 361 (482)
Q Consensus 354 v~~a~~~~ 361 (482)
|.|+....
T Consensus 100 v~~a~~~p 107 (114)
T 2cq2_A 100 LNFVEKVQ 107 (114)
T ss_dssp EEEESCCC
T ss_pred EEecccCc
Confidence 99997543
No 268
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.2e-16 Score=117.80 Aligned_cols=77 Identities=23% Similarity=0.395 Sum_probs=69.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
...++|||+|| .+|+++|+++|++||.|..|.|... ++||||+|.+.++|.+||..||+..|.|++|+|.++.+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP----RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 34589999996 8999999999999999999999533 59999999999999999999999999999999999987
Q ss_pred CCC
Q 011574 360 QTD 362 (482)
Q Consensus 360 ~~~ 362 (482)
+..
T Consensus 87 ~~~ 89 (97)
T 1x5p_A 87 QPM 89 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 269
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.5e-16 Score=120.77 Aligned_cols=78 Identities=18% Similarity=0.379 Sum_probs=72.0
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcC--CeEEEE
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK--GKTIRC 180 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~--g~~l~v 180 (482)
+...++|||+|||+++|+++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|++.||+..|. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345689999999999999999999999999999999754 679999999999999999999999999 999999
Q ss_pred eecCCc
Q 011574 181 SLSETK 186 (482)
Q Consensus 181 ~~~~~~ 186 (482)
.++.++
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998765
No 270
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=121.80 Aligned_cols=79 Identities=24% Similarity=0.410 Sum_probs=70.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
...++|||+|||+.+|+++|+++|++||.|. +.|+.++ .++||||+|.+.++|.+|+..||+..|.|++|+|.++.+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQG--PRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCC--CCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 3458999999999999999999999999996 5555432 369999999999999999999999999999999999987
Q ss_pred CC
Q 011574 360 QT 361 (482)
Q Consensus 360 ~~ 361 (482)
+.
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 271
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=1.3e-16 Score=122.54 Aligned_cols=81 Identities=22% Similarity=0.473 Sum_probs=73.2
Q ss_pred cCcceEEEecCCCCCCHHHHH----HHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEE
Q 011574 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~----~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v 354 (482)
...++|||+|||..+++++|+ ++|++||.|..|.|+. .+. +|||||+|.+.++|.+|+..||+..|.|++|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345899999999999999999 9999999999999873 223 799999999999999999999999999999999
Q ss_pred EEccCCCC
Q 011574 355 VLAKPQTD 362 (482)
Q Consensus 355 ~~a~~~~~ 362 (482)
.++.++..
T Consensus 84 ~~a~~~~~ 91 (97)
T 1nu4_A 84 QYAKTDSD 91 (97)
T ss_dssp EECSSCCT
T ss_pred EEccCCCc
Confidence 99987643
No 272
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2e-17 Score=123.60 Aligned_cols=78 Identities=21% Similarity=0.358 Sum_probs=71.3
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
..++|||+|||..+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+..||+..|.|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 457999999999999999999999999999999998865 33 8999999999999999999999999999999887653
No 273
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.67 E-value=1.8e-16 Score=125.34 Aligned_cols=75 Identities=15% Similarity=0.296 Sum_probs=67.2
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcE-----EEEE
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQV-----LEVV 355 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~-----l~v~ 355 (482)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+ +||||+|.+.++|.+||+.||+..|.|+. |+|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 4589999999999999999999999999999999876 79999999999999999999999999988 7777
Q ss_pred EccCC
Q 011574 356 LAKPQ 360 (482)
Q Consensus 356 ~a~~~ 360 (482)
.+.++
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 76654
No 274
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-16 Score=114.31 Aligned_cols=80 Identities=20% Similarity=0.370 Sum_probs=69.9
Q ss_pred CCCCCEEEECCCCCCCCHHH----HHHhhccC-CCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeE
Q 011574 103 PPNGSEVFIGGLPKDASEED----LRDLCEPI-GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~----l~~~f~~~-G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~ 177 (482)
++..++|||+|||+.+++++ |+++|++| |+|.+| |+ |+|||.|.+.++|.+|++.|++..|.||+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34455599999999999988 55899999 499988 23 99999999999999999999999999999
Q ss_pred EEEeecCCcceeeeC
Q 011574 178 IRCSLSETKNRLFIG 192 (482)
Q Consensus 178 l~v~~~~~~~~l~v~ 192 (482)
|+|.+++.++.++..
T Consensus 76 i~v~~A~~~sd~~~~ 90 (96)
T 2diu_A 76 IIVSFTPKNRELCET 90 (96)
T ss_dssp CEEESSCCSCCCCCC
T ss_pred EEEEecCCCcceeEe
Confidence 999999988776543
No 275
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=121.81 Aligned_cols=79 Identities=23% Similarity=0.444 Sum_probs=70.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
...++|||+|||..+++++|+++|++||.|..+ ...+. +|||||+|.+.++|.+|+..||+..|.|++|+|.++.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 345899999999999999999999999988766 22333 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 011574 359 PQTD 362 (482)
Q Consensus 359 ~~~~ 362 (482)
++..
T Consensus 90 ~~~~ 93 (96)
T 1fjc_A 90 EKGG 93 (96)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7643
No 276
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=5.4e-17 Score=126.76 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=74.8
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccc---eeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEE
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE---VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~---v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~ 355 (482)
...++|||+|||+.+|+++|+++|++||. |..|.|+.++.+. +|||||+|.+.++|.+||. +|+..|+|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 44589999999999999999999999998 8999999988866 9999999999999999999 99999999999999
Q ss_pred EccCCC
Q 011574 356 LAKPQT 361 (482)
Q Consensus 356 ~a~~~~ 361 (482)
++.++.
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 987643
No 277
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=2.1e-16 Score=125.36 Aligned_cols=81 Identities=17% Similarity=0.381 Sum_probs=73.8
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
..++|||+|||..+|+++|+++|++||.|..|.|+.+... +|||||+|.+.++|.+|+..||+..|.|+.|+|.++.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET-RGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTT-TTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC-CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 4579999999999999999999999999999999875432 799999999999999999999999999999999999865
Q ss_pred CC
Q 011574 361 TD 362 (482)
Q Consensus 361 ~~ 362 (482)
..
T Consensus 86 ~~ 87 (115)
T 3lqv_A 86 RA 87 (115)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 278
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=5.3e-17 Score=125.61 Aligned_cols=81 Identities=16% Similarity=0.265 Sum_probs=71.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||..+|+++|+++|++||.|.. .++.+.. +. +|||||+|.+.++|.+||+ ||+..|.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34589999999999999999999999999888 4554433 33 8999999999999999999 9999999999999999
Q ss_pred cCCCC
Q 011574 358 KPQTD 362 (482)
Q Consensus 358 ~~~~~ 362 (482)
.++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87654
No 279
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=5.9e-18 Score=134.55 Aligned_cols=82 Identities=18% Similarity=0.384 Sum_probs=74.9
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeE--------EEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCc
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTK--------VVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQ 350 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~ 350 (482)
..++|||+|||..+++++|+++|++||.|.. |.|+.++. +. ++||||+|.+.++|.+||..||+..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4579999999999999999999999999998 88888865 33 89999999999999999999999999999
Q ss_pred EEEEEEccCCCC
Q 011574 351 VLEVVLAKPQTD 362 (482)
Q Consensus 351 ~l~v~~a~~~~~ 362 (482)
+|+|.++.++..
T Consensus 86 ~l~V~~a~~~~~ 97 (116)
T 2lcw_A 86 PIKVSFATRRAD 97 (116)
Confidence 999999987643
No 280
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-17 Score=128.20 Aligned_cols=80 Identities=23% Similarity=0.344 Sum_probs=74.1
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
..++|||+|||+++|+++|+++|++||.|.. .++.+..+++++|||||+|.+.++|.+||+ ||+..|.|+.|+|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 5689999999999999999999999999888 667777789999999999999999999998 99999999999999987
Q ss_pred Cc
Q 011574 185 TK 186 (482)
Q Consensus 185 ~~ 186 (482)
++
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 281
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=7e-17 Score=128.23 Aligned_cols=80 Identities=25% Similarity=0.308 Sum_probs=72.5
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCe----eEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEE
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDV----FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v----~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l 178 (482)
....++|||+|||+++|+++|+++|++||.| ..|+|+.+. +|+++|||||+|.+.++|.+||+. |+..|.+|.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3467899999999999999999999999975 689999884 799999999999999999999975 9999999999
Q ss_pred EEeecC
Q 011574 179 RCSLSE 184 (482)
Q Consensus 179 ~v~~~~ 184 (482)
.|..+.
T Consensus 98 ~V~~a~ 103 (123)
T 2dha_A 98 ELFRST 103 (123)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 988764
No 282
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=1.3e-16 Score=126.87 Aligned_cols=80 Identities=29% Similarity=0.441 Sum_probs=72.6
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCee--EEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEE
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF--EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~--~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v 180 (482)
+...++|||+|||+++|+++|+++|+.| .|. .|+|+.++. |+++|||||+|.+.++|.+||+ +++..|.||.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 3467899999999999999999999999 677 999999987 9999999999999999999996 5789999999999
Q ss_pred eecCC
Q 011574 181 SLSET 185 (482)
Q Consensus 181 ~~~~~ 185 (482)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87753
No 283
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=4.3e-17 Score=132.30 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=73.7
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
+...++|||+|||+++|+++|+++|++|| |+.|+|+.++. ++++|||||+|.+.++|++|| .+|+..|.++.|.|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34568899999999999999999999999 77999999987 999999999999999999999 7899999999999988
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+...
T Consensus 120 a~~~ 123 (139)
T 2hgn_A 120 NSTT 123 (139)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7653
No 284
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.66 E-value=5.6e-16 Score=118.44 Aligned_cols=79 Identities=25% Similarity=0.448 Sum_probs=71.1
Q ss_pred cCCCCCCCEEEECCCCC-CCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEE
Q 011574 100 LALPPNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (482)
Q Consensus 100 ~~~~~~~~~v~v~nLp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l 178 (482)
....+..++|||+|||+ ++|+++|+++|++||.|..|.+. +|||||+|.+.++|.+|+..||+..|.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455789999999998 99999999999999999999983 6899999999999999999999999999999
Q ss_pred EEeecCCc
Q 011574 179 RCSLSETK 186 (482)
Q Consensus 179 ~v~~~~~~ 186 (482)
+|.+++.+
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998754
No 285
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=2.3e-16 Score=134.52 Aligned_cols=85 Identities=24% Similarity=0.350 Sum_probs=79.4
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 102 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
.+...++|||+|||+++|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 79999999999999999999999999999999999999
Q ss_pred ecCCcc
Q 011574 182 LSETKN 187 (482)
Q Consensus 182 ~~~~~~ 187 (482)
++....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 987643
No 286
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=2e-16 Score=121.37 Aligned_cols=82 Identities=18% Similarity=0.391 Sum_probs=75.1
Q ss_pred CCCCCEEEECCCCCCCCHHHHH----HhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEE
Q 011574 103 PPNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~----~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l 178 (482)
.+..++|||+|||+++|+++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3467899999999999999999 9999999999999874 47789999999999999999999999999999999
Q ss_pred EEeecCCcc
Q 011574 179 RCSLSETKN 187 (482)
Q Consensus 179 ~v~~~~~~~ 187 (482)
+|.++.++.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998654
No 287
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.4e-16 Score=116.88 Aligned_cols=75 Identities=19% Similarity=0.418 Sum_probs=69.7
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHh-CCCCcCCeEEEEee
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRCSL 182 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l-~~~~~~g~~l~v~~ 182 (482)
...++|||+|||.++|+++|+++|++||.|..|+++++ +|||||+|.+.++|.+|++.| ++..+.|++|+|.+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 45688999999999999999999999999999999864 789999999999999999988 99999999999998
Q ss_pred cC
Q 011574 183 SE 184 (482)
Q Consensus 183 ~~ 184 (482)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 288
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.65 E-value=5.2e-16 Score=121.08 Aligned_cols=76 Identities=32% Similarity=0.602 Sum_probs=71.4
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4467899999999999999999999999999999997 67999999999999999999999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+...
T Consensus 100 a~~~ 103 (108)
T 2jvo_A 100 SKLP 103 (108)
T ss_dssp CSCC
T ss_pred ecCC
Confidence 8764
No 289
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.65 E-value=1.1e-16 Score=116.49 Aligned_cols=73 Identities=27% Similarity=0.471 Sum_probs=67.9
Q ss_pred eEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCC-CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 284 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
+|||+|||..+|+++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+. ++++.|.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999998875 33 8999999999999999999 5899999999999885
No 290
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.7e-17 Score=129.86 Aligned_cols=79 Identities=25% Similarity=0.453 Sum_probs=71.8
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCe----eEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEE
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDV----FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v----~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~ 179 (482)
...++|||+|||+++|+++|+++|++||.| ..+.+. +++++|||||+|.+.++|.+||+.||+..|.|+.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 457899999999999999999999999998 445544 688999999999999999999999999999999999
Q ss_pred EeecCCc
Q 011574 180 CSLSETK 186 (482)
Q Consensus 180 v~~~~~~ 186 (482)
|.++..+
T Consensus 99 v~~a~~~ 105 (115)
T 2cpx_A 99 IEFGKNK 105 (115)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9998764
No 291
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=9.9e-18 Score=133.25 Aligned_cols=83 Identities=33% Similarity=0.523 Sum_probs=78.2
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeE--------EEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCC
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE--------VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~--------v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g 175 (482)
...++|||+|||+++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|.+||+.||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35688999999999999999999999999998 9999998889999999999999999999999999999999
Q ss_pred eEEEEeecCCc
Q 011574 176 KTIRCSLSETK 186 (482)
Q Consensus 176 ~~l~v~~~~~~ 186 (482)
+.|+|.++.++
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999998754
No 292
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4e-16 Score=119.57 Aligned_cols=78 Identities=28% Similarity=0.490 Sum_probs=70.9
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|++||.|. +.++. ++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3568999999999999999999999999996 66664 467899999999999999999999999999999999998
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
.++
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 293
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=127.18 Aligned_cols=79 Identities=14% Similarity=0.278 Sum_probs=71.6
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccce----eEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEE
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEV----TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v----~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~ 355 (482)
...+|||+|||+.+|+++|+++|++||.| ..|.|+.+..++ +|||||+|.+.++|.+||.. |++.|.+|.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 34799999999999999999999999975 689888887776 99999999999999999995 9999999999999
Q ss_pred EccCC
Q 011574 356 LAKPQ 360 (482)
Q Consensus 356 ~a~~~ 360 (482)
.+.++
T Consensus 101 ~a~~~ 105 (123)
T 2dha_A 101 RSTAA 105 (123)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98654
No 294
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=5.6e-16 Score=122.85 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=71.3
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcE-EEEEeCCHHHHHHHHHHcCCceeCC--cEEEEEEc
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDF-GFIHYAERSSALKAVKDTEKYEIDG--QVLEVVLA 357 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~-afV~f~~~e~A~~A~~~l~~~~~~g--~~l~v~~a 357 (482)
....|||+||++.+|+++|+++|++||.|.+|+|+... ++| |||+|.+.++|.+|++.|||..|.| ++|+|.|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 34678999999999999999999999999999887643 477 9999999999999999999999988 99999999
Q ss_pred cCCCC
Q 011574 358 KPQTD 362 (482)
Q Consensus 358 ~~~~~ 362 (482)
+++..
T Consensus 104 k~~~l 108 (130)
T 3zzy_A 104 KLTSL 108 (130)
T ss_dssp SCSSC
T ss_pred CCCce
Confidence 87643
No 295
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.1e-16 Score=117.31 Aligned_cols=77 Identities=27% Similarity=0.475 Sum_probs=71.2
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|.+++ +||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 44678999999999999999999999999999999974 3999999999999999999999999999999999
Q ss_pred cCCcc
Q 011574 183 SETKN 187 (482)
Q Consensus 183 ~~~~~ 187 (482)
+.++.
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 97653
No 296
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.65 E-value=7.5e-16 Score=126.88 Aligned_cols=80 Identities=19% Similarity=0.247 Sum_probs=71.7
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCC--cEEEEEEcc
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG--QVLEVVLAK 358 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g--~~l~v~~a~ 358 (482)
...+|||+||++.+|+++|+++|++||.|.+|.|...+ .++||||+|.+.++|.+|++.|||..|.| ++|+|.|++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 34689999999999999999999999999999986543 25899999999999999999999999965 999999998
Q ss_pred CCCC
Q 011574 359 PQTD 362 (482)
Q Consensus 359 ~~~~ 362 (482)
++..
T Consensus 123 ~~~l 126 (164)
T 1sjr_A 123 LTSL 126 (164)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 7743
No 297
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.64 E-value=1.9e-16 Score=125.89 Aligned_cols=79 Identities=22% Similarity=0.363 Sum_probs=71.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccccee--EEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEE
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~--~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~ 356 (482)
...++|||+|||+.+|+++|+++|++| .|+ .|.|+.++.++ +|||||+|.+.++|.+||. +++..|+||.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 345789999999999999999999999 666 99999988876 9999999999999999998 577999999999999
Q ss_pred ccCC
Q 011574 357 AKPQ 360 (482)
Q Consensus 357 a~~~ 360 (482)
+.++
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 298
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2e-16 Score=122.37 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=71.8
Q ss_pred CEEEECCC----CCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCC----HHH----HHHHHH--HhCCCC
Q 011574 107 SEVFIGGL----PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRS----KEF----AKKAID--ELHSKE 172 (482)
Q Consensus 107 ~~v~v~nL----p~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~----~e~----A~~al~--~l~~~~ 172 (482)
+.|||+|| |+.+++.+|+.+|+.||+|.+|.++.|+.||+++|||||+|.+ ++. |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 9999999999999999999999999999999999999999996 333 888988 689999
Q ss_pred cCCeEEEEeecCC
Q 011574 173 LKGKTIRCSLSET 185 (482)
Q Consensus 173 ~~g~~l~v~~~~~ 185 (482)
|.|+.|+|...+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999997664
No 299
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.6e-16 Score=123.59 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=70.0
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
..++|||+|||+++|+++|+++|++||.|..|.|+. +++||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999999864 47899999999999999999999999999999999986
Q ss_pred C
Q 011574 185 T 185 (482)
Q Consensus 185 ~ 185 (482)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 300
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.6e-16 Score=116.57 Aligned_cols=76 Identities=36% Similarity=0.559 Sum_probs=70.6
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
+...++|||+|||+++|+++|+++|++||.|..|++++ +||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44678999999999999999999999999999999974 3999999999999999999999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+.+.
T Consensus 78 a~~~ 81 (90)
T 2dnp_A 78 STKG 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8764
No 301
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.3e-15 Score=120.47 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=69.8
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcE-EEEEeCCHHHHHHHHHHcCCceeCC--cEEEEEEc
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDF-GFIHYAERSSALKAVKDTEKYEIDG--QVLEVVLA 357 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~-afV~f~~~e~A~~A~~~l~~~~~~g--~~l~v~~a 357 (482)
....|||+||++.+|+++|+++|++||.|.+|.|+.. .|| |||+|.+.++|.+|++.|||..|.| ++|+|.+|
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 3456789999999999999999999999999998653 286 9999999999999999999999987 69999999
Q ss_pred cCCCC
Q 011574 358 KPQTD 362 (482)
Q Consensus 358 ~~~~~ 362 (482)
+++..
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 87753
No 302
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.6e-16 Score=113.20 Aligned_cols=72 Identities=24% Similarity=0.391 Sum_probs=65.0
Q ss_pred eEEEecCCCCCCHHH----HHHHHhcc-cceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 284 ALYVKNIPDNTSTEK----IKELFQRH-GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 284 ~l~v~nlp~~~t~~~----l~~~F~~~-G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
.|||+|||+.+++++ |+++|++| |.|.+|. + |+|||.|.+.++|.+|++.|+|..|.||+|+|++|+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------g--G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------G--CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------T--TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------c--CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 499999999999988 55899999 5999993 1 899999999999999999999999999999999998
Q ss_pred CCCCC
Q 011574 359 PQTDK 363 (482)
Q Consensus 359 ~~~~~ 363 (482)
.+..-
T Consensus 83 ~~sd~ 87 (96)
T 2diu_A 83 KNREL 87 (96)
T ss_dssp CSCCC
T ss_pred CCcce
Confidence 77543
No 303
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.8e-16 Score=118.80 Aligned_cols=76 Identities=28% Similarity=0.513 Sum_probs=69.6
Q ss_pred CCCCCEEEECCCCC-CCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 103 PPNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 103 ~~~~~~v~v~nLp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
.+..++|||+|||+ ++|+++|+++|++||.|..|.+. +|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44678999999998 99999999999999999999984 6799999999999999999999999999999999
Q ss_pred ecCCc
Q 011574 182 LSETK 186 (482)
Q Consensus 182 ~~~~~ 186 (482)
++..+
T Consensus 79 ~a~~~ 83 (96)
T 2kvi_A 79 VSSSN 83 (96)
T ss_dssp EEECC
T ss_pred EcCcC
Confidence 98654
No 304
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-16 Score=127.43 Aligned_cols=81 Identities=16% Similarity=0.301 Sum_probs=71.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEE-EcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v-~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
...++|||+|||+.+|+++|+++|++||.|..+ .|.....+. +|||||+|.+.++|.+||. ||++.|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 445899999999999999999999999999874 444444555 8999999999999999999 9999999999999999
Q ss_pred cCCC
Q 011574 358 KPQT 361 (482)
Q Consensus 358 ~~~~ 361 (482)
.++.
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7643
No 305
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=7.7e-16 Score=119.41 Aligned_cols=75 Identities=25% Similarity=0.473 Sum_probs=69.8
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|++||.|..|.++ ++||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 356889999999999999999999999999999986 349999999999999999999999999999999998
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
.+.
T Consensus 81 ~~~ 83 (103)
T 2dgu_A 81 KPP 83 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 306
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.63 E-value=6e-16 Score=131.96 Aligned_cols=82 Identities=28% Similarity=0.433 Sum_probs=76.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
...++|||+|||+.+++++|+++|++||.|..|.|+.+..+. ++||||+|.+.++|.+||..||+..|.|++|+|.||.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 456899999999999999999999999999999999988655 8999999999999999999999999999999999997
Q ss_pred CCC
Q 011574 359 PQT 361 (482)
Q Consensus 359 ~~~ 361 (482)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 653
No 307
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=9.2e-16 Score=121.22 Aligned_cols=78 Identities=31% Similarity=0.496 Sum_probs=67.4
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCC---CCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEE
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES---GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~---g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v 180 (482)
...++|||+|||+++|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+||+.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3568899999999999999999999999999 888888877 7999999999999999999999884 256666666
Q ss_pred eecC
Q 011574 181 SLSE 184 (482)
Q Consensus 181 ~~~~ 184 (482)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5443
No 308
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=2.6e-16 Score=120.53 Aligned_cols=77 Identities=23% Similarity=0.454 Sum_probs=70.5
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
..++|||+|||+++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|.+|+..|++..|.|+.|.|.++.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 46899999999999999999999999988766 3458899999999999999999999999999999999999987
Q ss_pred Cc
Q 011574 185 TK 186 (482)
Q Consensus 185 ~~ 186 (482)
++
T Consensus 90 ~~ 91 (96)
T 1fjc_A 90 EK 91 (96)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 309
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=1.5e-15 Score=113.82 Aligned_cols=76 Identities=22% Similarity=0.446 Sum_probs=62.7
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCce--eCCcEEEEEEc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE--IDGQVLEVVLA 357 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~--~~g~~l~v~~a 357 (482)
...++|||+|||+.+|+++|+++|++||.|.+|.|+.+ .||||||+|.+.++|.+ |++.. +.|+.|.|.++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 44589999999999999999999999999999999885 47999999999999984 45544 56999999999
Q ss_pred cCCCC
Q 011574 358 KPQTD 362 (482)
Q Consensus 358 ~~~~~ 362 (482)
.++..
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 87654
No 310
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=116.76 Aligned_cols=75 Identities=28% Similarity=0.430 Sum_probs=69.7
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccC--CCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPI--GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~--G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
..++|||+|||+++|+++|+++|++| |.|..|++. +|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 56899999999999999999999999 999999874 56999999999999999999999999999999999
Q ss_pred cCCcc
Q 011574 183 SETKN 187 (482)
Q Consensus 183 ~~~~~ 187 (482)
++++.
T Consensus 86 a~~~~ 90 (99)
T 2cpd_A 86 AKPVD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98653
No 311
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=1.4e-16 Score=123.41 Aligned_cols=79 Identities=29% Similarity=0.542 Sum_probs=74.2
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
..++|||+|||+++|+++|+++|++||.|..|+++.++ +++++|||||+|.+.++|.+|+. ++..|.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45899999999999999999999999999999999998 89999999999999999999996 9999999999998876
Q ss_pred Cc
Q 011574 185 TK 186 (482)
Q Consensus 185 ~~ 186 (482)
.+
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 44
No 312
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=3.3e-16 Score=121.32 Aligned_cols=82 Identities=20% Similarity=0.382 Sum_probs=74.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+. +++.|+|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 345899999999999999999999999999999999988655 9999999999999999998 9999999999999998
Q ss_pred CCCCC
Q 011574 359 PQTDK 363 (482)
Q Consensus 359 ~~~~~ 363 (482)
++...
T Consensus 85 ~~~~~ 89 (102)
T 2xs2_A 85 RKQNL 89 (102)
T ss_dssp ECC--
T ss_pred cCcch
Confidence 76543
No 313
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=7.3e-16 Score=115.69 Aligned_cols=75 Identities=17% Similarity=0.356 Sum_probs=68.9
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
..++|||+|||+.+++++|+++|++| .|..|.|. ..+|||||+|.+.++|.+|+..||+..|.|++|+|.++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 34789999999999999999999999 99999885 23699999999999999999999999999999999998654
No 314
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.4e-16 Score=115.45 Aligned_cols=78 Identities=22% Similarity=0.457 Sum_probs=66.7
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
..++|||+|||..+|+++|+++|++||.|..|.|+.+ .+|||||+|.+.++|++|+. ....+.+++|.|.++.++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCC
Confidence 3589999999999999999999999999999999875 36999999999999986433 234569999999999877
Q ss_pred CCC
Q 011574 361 TDK 363 (482)
Q Consensus 361 ~~~ 363 (482)
...
T Consensus 79 ~~~ 81 (88)
T 1wf0_A 79 HNS 81 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 315
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=115.72 Aligned_cols=77 Identities=25% Similarity=0.417 Sum_probs=68.8
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|++||.|..| +.++.+++ ||||+|.+.++|.+||+ ||+..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 356799999999999999999999999999987 55555555 99999999999999998 9999999999999987
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
..+
T Consensus 80 ~~~ 82 (94)
T 2e5g_A 80 EQK 82 (94)
T ss_dssp CCS
T ss_pred CcC
Confidence 644
No 316
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.7e-16 Score=117.37 Aligned_cols=77 Identities=29% Similarity=0.487 Sum_probs=69.0
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCC-eeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCC-CCcCCeEEEE
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGKTIRC 180 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~-v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~-~~~~g~~l~v 180 (482)
+...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..|.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 346789999999999999999999999999 6666552 478999999999999999999999 9999999999
Q ss_pred eecCCc
Q 011574 181 SLSETK 186 (482)
Q Consensus 181 ~~~~~~ 186 (482)
.++.++
T Consensus 78 ~~a~~~ 83 (93)
T 2cqh_A 78 DYSVSK 83 (93)
T ss_dssp EECCCC
T ss_pred EEccCc
Confidence 998764
No 317
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=9.3e-16 Score=117.37 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=71.2
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEE-EEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEV-RLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v-~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
..++|||+|||+++|+++|+++|++||.|..| .++.++.++ .|||+|.+.++|.+|++.||+..|.|++|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46889999999999999999999999999999 588776644 3999999999999999999999999999999998
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 764
No 318
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.61 E-value=1.4e-15 Score=126.82 Aligned_cols=79 Identities=28% Similarity=0.467 Sum_probs=73.6
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
....++|||+|||+++|+++|+++|++||.|..|+++.+ ++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999876 588999999999999999999999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+.++
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8765
No 319
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.61 E-value=3.3e-16 Score=129.41 Aligned_cols=83 Identities=23% Similarity=0.365 Sum_probs=70.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEE--EcCCC----CCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEE
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV--VMPPG----KSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v--~i~~~----~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l 352 (482)
...++|||+|||+.+|+++|+.+|++||.|..+ .++.+ ..+. +|||||+|.+.++|.+||..||+..|.|++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 345799999999999999999999999998764 11111 2334 8999999999999999999999999999999
Q ss_pred EEEEccCCCC
Q 011574 353 EVVLAKPQTD 362 (482)
Q Consensus 353 ~v~~a~~~~~ 362 (482)
+|.++.+...
T Consensus 123 ~V~~a~~~~~ 132 (143)
T 3egn_A 123 VVQFARSARP 132 (143)
T ss_dssp EEEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999976543
No 320
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.61 E-value=1.7e-15 Score=118.98 Aligned_cols=74 Identities=26% Similarity=0.456 Sum_probs=69.4
Q ss_pred CCCEEEECCCCCC-CCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 105 NGSEVFIGGLPKD-ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 105 ~~~~v~v~nLp~~-~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
..++|||+|||++ +|+++|+++|++||.|..|.+ ++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 999999999999999999998 4789999999999999999999999999999999998
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
...
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 743
No 321
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=4.9e-15 Score=128.34 Aligned_cols=123 Identities=16% Similarity=0.221 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhccccccCCCCCeeeecCCCCCCCcc---ccccCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCC
Q 011574 240 NACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS---AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPP 316 (482)
Q Consensus 240 ~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~ 316 (482)
......|++......+.+......+........+... ......++|||+|||+.+|+++|+++|++||.|..|+|++
T Consensus 64 ~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~ 143 (193)
T 2voo_A 64 FNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR 143 (193)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEE
T ss_pred HHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEE
Confidence 3555556655433445556666666555322211110 0123458999999999999999999999999999999998
Q ss_pred CCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCCCC
Q 011574 317 GKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (482)
Q Consensus 317 ~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 363 (482)
+..+. +|||||+|.+.++|.+||..+ +..|+|++|.|.++..-..+
T Consensus 144 ~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y~~~ 190 (193)
T 2voo_A 144 TLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDYFAK 190 (193)
T ss_dssp CTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC---
T ss_pred CCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHHHHH
Confidence 87766 999999999999999999855 56999999999998765443
No 322
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=1.9e-15 Score=147.37 Aligned_cols=82 Identities=20% Similarity=0.417 Sum_probs=78.5
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
..++|||+|||+++|+++|+.+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred Cc
Q 011574 185 TK 186 (482)
Q Consensus 185 ~~ 186 (482)
..
T Consensus 181 ~~ 182 (437)
T 3pgw_S 181 GR 182 (437)
T ss_pred CC
Confidence 54
No 323
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=4.2e-15 Score=126.40 Aligned_cols=81 Identities=27% Similarity=0.555 Sum_probs=77.7
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||.++|+++|+++|++||.|..+.++.+..++.++|+|||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 011574 184 E 184 (482)
Q Consensus 184 ~ 184 (482)
+
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 324
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=3.4e-15 Score=111.94 Aligned_cols=72 Identities=25% Similarity=0.458 Sum_probs=66.8
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcc----c-------ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRH----G-------EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~----G-------~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~ 348 (482)
...++|||+|||+.+++++|+++|++| | .|..+.+..++ +||||+|.+.++|.+|+ .||+..|.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k----g~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK----NFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS----SEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC----cEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 345899999999999999999999999 8 89999998764 99999999999999999 89999999
Q ss_pred CcEEEEEE
Q 011574 349 GQVLEVVL 356 (482)
Q Consensus 349 g~~l~v~~ 356 (482)
|+.|+|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 325
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.60 E-value=3e-15 Score=132.65 Aligned_cols=81 Identities=12% Similarity=0.305 Sum_probs=74.3
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
+.++|||+|||+.+|+++|+++|++||.|.+|+|++++.+ . +|||||+|.+.++|.+||..+|+..+.|+.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 4579999999999999999999999999999999988754 3 8999999999999999999999999999999999986
Q ss_pred CCC
Q 011574 359 PQT 361 (482)
Q Consensus 359 ~~~ 361 (482)
...
T Consensus 94 ~~~ 96 (213)
T 4f02_A 94 RDP 96 (213)
T ss_dssp CCT
T ss_pred ccc
Confidence 553
No 326
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=3.7e-16 Score=129.12 Aligned_cols=84 Identities=21% Similarity=0.339 Sum_probs=72.1
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEE--E---eccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeE
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR--L---MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~--~---~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~ 177 (482)
....++|||+|||+++|+++|+.+|++||.|..|. + +....+++++|||||+|.+.++|.+||..||+..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34678999999999999999999999999887641 1 111235889999999999999999999999999999999
Q ss_pred EEEeecCCc
Q 011574 178 IRCSLSETK 186 (482)
Q Consensus 178 l~v~~~~~~ 186 (482)
|.|.++...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998753
No 327
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=1.7e-15 Score=119.79 Aligned_cols=74 Identities=28% Similarity=0.456 Sum_probs=66.0
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeE-----EE
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT-----IR 179 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~-----l~ 179 (482)
..++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4688999999999999999999999999999999765 79999999999999999999999999998 66
Q ss_pred EeecCC
Q 011574 180 CSLSET 185 (482)
Q Consensus 180 v~~~~~ 185 (482)
|..+.+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 665543
No 328
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.9e-15 Score=113.00 Aligned_cols=76 Identities=20% Similarity=0.465 Sum_probs=69.6
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|| ++|+++|+++|++||.|..|.|. +++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35689999996 89999999999999999999984 45889999999999999999999999999999999998
Q ss_pred CCcc
Q 011574 184 ETKN 187 (482)
Q Consensus 184 ~~~~ 187 (482)
.++.
T Consensus 85 ~~~~ 88 (97)
T 1x5p_A 85 RKQP 88 (97)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7653
No 329
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=6e-15 Score=113.78 Aligned_cols=80 Identities=21% Similarity=0.243 Sum_probs=70.1
Q ss_pred cCcceEEEecCCC-----CCCHHHHHHHHhcccceeEEEcCCCCC--CC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcE
Q 011574 280 SQVKALYVKNIPD-----NTSTEKIKELFQRHGEVTKVVMPPGKS--GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQV 351 (482)
Q Consensus 280 ~~~~~l~v~nlp~-----~~t~~~l~~~F~~~G~v~~v~i~~~~~--~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~ 351 (482)
..+++|+|.||.. .-++++|+++|++||.|.+|.|+.++. +. +|||||+|.+.++|.+|+..|||+.|.||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3458999999973 237899999999999999999998753 23 899999999999999999999999999999
Q ss_pred EEEEEccC
Q 011574 352 LEVVLAKP 359 (482)
Q Consensus 352 l~v~~a~~ 359 (482)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 330
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.3e-15 Score=115.65 Aligned_cols=77 Identities=25% Similarity=0.351 Sum_probs=67.8
Q ss_pred CCCCCCEEEE--CCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCc-----C
Q 011574 102 LPPNGSEVFI--GGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL-----K 174 (482)
Q Consensus 102 ~~~~~~~v~v--~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~-----~ 174 (482)
.....++||| +||++++|+++|+++|++||.|..|.|+. .+|||||+|.+.++|.+|++.||+..| .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3445688999 77999999999999999999999998864 278999999999999999999999987 6
Q ss_pred CeEEEEeecC
Q 011574 175 GKTIRCSLSE 184 (482)
Q Consensus 175 g~~l~v~~~~ 184 (482)
+++|.|.++.
T Consensus 95 g~~l~v~~a~ 104 (114)
T 2cq2_A 95 KITLYLNFVE 104 (114)
T ss_dssp EEECEEEEES
T ss_pred CcEEEEEecc
Confidence 8888887664
No 331
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.58 E-value=5.4e-15 Score=117.19 Aligned_cols=79 Identities=15% Similarity=0.234 Sum_probs=71.0
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccce-EEEEeCCHHHHHHHHHHhCCCCcCC--eEEEE
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF-AFVSFRSKEFAKKAIDELHSKELKG--KTIRC 180 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~-afV~f~~~e~A~~al~~l~~~~~~g--~~l~v 180 (482)
..-..|||+||++.+|+++|+++|++||.|.+|+++.. ++|+ |||+|.+.++|.+|++.|||..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34467889999999999999999999999999998764 2577 9999999999999999999999988 99999
Q ss_pred eecCCcc
Q 011574 181 SLSETKN 187 (482)
Q Consensus 181 ~~~~~~~ 187 (482)
.+++...
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998653
No 332
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.58 E-value=8.4e-15 Score=112.96 Aligned_cols=82 Identities=17% Similarity=0.277 Sum_probs=73.4
Q ss_pred CCCCEEEECCCCC-----CCCHHHHHHhhccCCCeeEEEEeccCCC-CCccceEEEEeCCHHHHHHHHHHhCCCCcCCeE
Q 011574 104 PNGSEVFIGGLPK-----DASEEDLRDLCEPIGDVFEVRLMKDKES-GESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (482)
Q Consensus 104 ~~~~~v~v~nLp~-----~~t~~~l~~~f~~~G~v~~v~~~~~~~~-g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~ 177 (482)
..+++|+|+||.. +.++++|+++|++||.|.+|.|+.++.+ ++++|+|||+|.+.++|.+|++.|||..|.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 2478999999999999999999998754 688999999999999999999999999999999
Q ss_pred EEEeecCC
Q 011574 178 IRCSLSET 185 (482)
Q Consensus 178 l~v~~~~~ 185 (482)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 333
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=5.2e-15 Score=121.90 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=71.1
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCC--eEEEEe
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG--KTIRCS 181 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g--~~l~v~ 181 (482)
....+|||+||++.+|+++|+++|++||.|..|+|+.. +++|||||+|.+.++|.+|++.||+..|.+ +.|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34467899999999999999999999999999998753 257899999999999999999999999965 999999
Q ss_pred ecCCc
Q 011574 182 LSETK 186 (482)
Q Consensus 182 ~~~~~ 186 (482)
+++.+
T Consensus 120 ~Ak~~ 124 (164)
T 1sjr_A 120 FSKLT 124 (164)
T ss_dssp ECSSS
T ss_pred EecCC
Confidence 99865
No 334
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.58 E-value=5.9e-15 Score=129.30 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=72.1
Q ss_pred CcceEEEecCC-CCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 281 QVKALYVKNIP-DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 281 ~~~~l~v~nlp-~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
..++|||+||| ..+|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|.+||+.|||..|.|++|+|.+++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK---PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS---TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 34799999999 899999999999999999999998764 68999999999999999999999999999999999975
Q ss_pred CC
Q 011574 360 QT 361 (482)
Q Consensus 360 ~~ 361 (482)
+.
T Consensus 80 ~~ 81 (205)
T 3tyt_A 80 PA 81 (205)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 335
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=3.1e-15 Score=115.76 Aligned_cols=76 Identities=25% Similarity=0.307 Sum_probs=68.3
Q ss_pred ceEEEecC----CCCCCHHHHHHHHhcccceeEEEcCCCCCCC--CcEEEEEeCC----HHH----HHHHHH--HcCCce
Q 011574 283 KALYVKNI----PDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAE----RSS----ALKAVK--DTEKYE 346 (482)
Q Consensus 283 ~~l~v~nl----p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~--kg~afV~f~~----~e~----A~~A~~--~l~~~~ 346 (482)
.+|||+|| |+.+++.+|+.+|++||.|..|.++.|+.+. +|||||+|.+ +++ |.+|+. .||+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999864 9999999995 333 889988 789999
Q ss_pred eCCcEEEEEEcc
Q 011574 347 IDGQVLEVVLAK 358 (482)
Q Consensus 347 ~~g~~l~v~~a~ 358 (482)
|.|++|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999864
No 336
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.58 E-value=6.8e-15 Score=110.30 Aligned_cols=76 Identities=32% Similarity=0.541 Sum_probs=62.8
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCC--cCCeEEE
Q 011574 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTIR 179 (482)
Q Consensus 102 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~--~~g~~l~ 179 (482)
.+...++|||+|||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|.+ +++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3456789999999999999999999999999999999874 68999999999999983 45555 4699999
Q ss_pred EeecCCc
Q 011574 180 CSLSETK 186 (482)
Q Consensus 180 v~~~~~~ 186 (482)
|.++.++
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9998754
No 337
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.58 E-value=8e-15 Score=130.52 Aligned_cols=83 Identities=19% Similarity=0.481 Sum_probs=79.2
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||.++|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred CCc
Q 011574 184 ETK 186 (482)
Q Consensus 184 ~~~ 186 (482)
...
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 764
No 338
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.57 E-value=5.6e-15 Score=126.42 Aligned_cols=79 Identities=28% Similarity=0.537 Sum_probs=76.2
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
..++|||+|||+++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 4688999999999999999999999999999999999888999999999999999999999999999999999999986
No 339
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.57 E-value=1e-14 Score=124.28 Aligned_cols=80 Identities=16% Similarity=0.328 Sum_probs=74.4
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC-C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
.++|||+|||..+++++|+++|++||.|..|.|+.++.. . +|||||+|.+.++|.+|+..|++..|.|++|+|.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 479999999999999999999999999999999988643 3 89999999999999999999999999999999999976
Q ss_pred CC
Q 011574 360 QT 361 (482)
Q Consensus 360 ~~ 361 (482)
..
T Consensus 83 ~~ 84 (168)
T 1b7f_A 83 GG 84 (168)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 340
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.57 E-value=6.2e-15 Score=117.30 Aligned_cols=77 Identities=23% Similarity=0.395 Sum_probs=69.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
...++|||+|| .+|+++|+++|++||.|..|.|... ++||||+|.+.++|.+||..||+..|.|++|+|.|+.+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~----kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP----RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETT----TTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 34589999996 6999999999999999999998633 59999999999999999999999999999999999987
Q ss_pred CCC
Q 011574 360 QTD 362 (482)
Q Consensus 360 ~~~ 362 (482)
+..
T Consensus 111 ~~~ 113 (121)
T 2bz2_A 111 QPM 113 (121)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 341
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.57 E-value=1e-14 Score=124.05 Aligned_cols=80 Identities=25% Similarity=0.519 Sum_probs=74.5
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCC-CCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
.++|||+|||..+|+++|+++|++||.|..|.|+.++ .+. +|||||+|.+.++|.+|+..||+..|.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4799999999999999999999999999999999887 444 89999999999999999999999999999999999976
Q ss_pred CC
Q 011574 360 QT 361 (482)
Q Consensus 360 ~~ 361 (482)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 342
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=4.7e-15 Score=111.17 Aligned_cols=71 Identities=25% Similarity=0.545 Sum_probs=66.2
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccC----C-------CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCc
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPI----G-------DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~----G-------~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~ 173 (482)
..++|||+|||+++|+++|+++|++| | .|.++++..+ +|||||+|.+.++|.+|+ .||+..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 46899999999999999999999999 8 8999998754 789999999999999999 9999999
Q ss_pred CCeEEEEee
Q 011574 174 KGKTIRCSL 182 (482)
Q Consensus 174 ~g~~l~v~~ 182 (482)
.|+.|+|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999975
No 343
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.56 E-value=9.7e-15 Score=128.04 Aligned_cols=84 Identities=27% Similarity=0.531 Sum_probs=79.8
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEee
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~ 182 (482)
+...++|||+|||+++|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35679999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCc
Q 011574 183 SETK 186 (482)
Q Consensus 183 ~~~~ 186 (482)
+.++
T Consensus 191 a~~~ 194 (198)
T 2yh0_A 191 ASVG 194 (198)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8765
No 344
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=1.6e-14 Score=114.16 Aligned_cols=75 Identities=23% Similarity=0.336 Sum_probs=67.7
Q ss_pred CEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccce-EEEEeCCHHHHHHHHHHhCCCCcCC--eEEEEeec
Q 011574 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF-AFVSFRSKEFAKKAIDELHSKELKG--KTIRCSLS 183 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~-afV~f~~~e~A~~al~~l~~~~~~g--~~l~v~~~ 183 (482)
..|||+|||+.+|+++|+++|++||.|..|+|+.. .|| |||+|.+.++|.+|++.|||..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 44689999999999999999999999999999652 276 9999999999999999999999987 69999999
Q ss_pred CCcc
Q 011574 184 ETKN 187 (482)
Q Consensus 184 ~~~~ 187 (482)
++..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8764
No 345
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.55 E-value=4.6e-15 Score=126.31 Aligned_cols=80 Identities=24% Similarity=0.563 Sum_probs=76.2
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~ 185 (482)
.++|||+|||+++|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++ +++..|.|+.|.|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5689999999999999999999999999999999998899999999999999999999996 899999999999999876
Q ss_pred c
Q 011574 186 K 186 (482)
Q Consensus 186 ~ 186 (482)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 346
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.6e-14 Score=110.45 Aligned_cols=81 Identities=11% Similarity=0.208 Sum_probs=69.2
Q ss_pred cCcceEEEecCCCCCC-----------HHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeC
Q 011574 280 SQVKALYVKNIPDNTS-----------TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t-----------~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~ 348 (482)
...++|+|.||..... +++|+++|++||.|..|.|. ++. .+|||||+|.+.++|.+|+..||++.|.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~~-~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DRH-PDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TTC-TTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cCC-CCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4468999999954432 57999999999999999774 332 4799999999999999999999999999
Q ss_pred CcEEEEEEccCCCC
Q 011574 349 GQVLEVVLAKPQTD 362 (482)
Q Consensus 349 g~~l~v~~a~~~~~ 362 (482)
|++|+|.++.++..
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999987654
No 347
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.9e-14 Score=111.80 Aligned_cols=76 Identities=21% Similarity=0.414 Sum_probs=65.0
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCC----C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEE
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG----K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~----~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~ 355 (482)
..++|||+|||+.+|+++|+++|++||.|. +.++.+..+ . +|||||+|.+.++|.+||+.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 458999999999999999999999999999 877776643 4 9999999999999999999884 4777777776
Q ss_pred EccC
Q 011574 356 LAKP 359 (482)
Q Consensus 356 ~a~~ 359 (482)
.+..
T Consensus 84 ~~~~ 87 (114)
T 2dnl_A 84 SSPT 87 (114)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 5543
No 348
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.54 E-value=2e-14 Score=125.86 Aligned_cols=83 Identities=28% Similarity=0.545 Sum_probs=75.4
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeec
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~ 183 (482)
...++|||+|||+++|+++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3558999999999999999999999999999999999998899999999999999999999965 899999999999998
Q ss_pred CCcc
Q 011574 184 ETKN 187 (482)
Q Consensus 184 ~~~~ 187 (482)
.++.
T Consensus 181 ~~k~ 184 (196)
T 1l3k_A 181 LSKQ 184 (196)
T ss_dssp C---
T ss_pred CChh
Confidence 7653
No 349
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.54 E-value=2e-13 Score=126.71 Aligned_cols=80 Identities=20% Similarity=0.446 Sum_probs=72.8
Q ss_pred cCcceEEEecCCCCCCHHHHH----HHHhcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEE
Q 011574 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~----~~F~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v 354 (482)
...++|||+|||..+|+++|+ ++|++||.|..|+|++ .+. +|||||+|.+.++|.+||..||+..|.|+.|+|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 446899999999999999977 8999999999999887 334 899999999999999999999999999999999
Q ss_pred EEccCCC
Q 011574 355 VLAKPQT 361 (482)
Q Consensus 355 ~~a~~~~ 361 (482)
.|+....
T Consensus 85 ~~a~~~~ 91 (282)
T 3pgw_A 85 QYAKTDS 91 (282)
T ss_pred EEeccCc
Confidence 9997655
No 350
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.53 E-value=2.7e-14 Score=113.58 Aligned_cols=77 Identities=21% Similarity=0.490 Sum_probs=70.2
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEe
Q 011574 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (482)
Q Consensus 102 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~ 181 (482)
.+...++|||+|| ++|+++|+++|++||.|..|.+. +++|||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999996 69999999999999999999985 458899999999999999999999999999999999
Q ss_pred ecCCc
Q 011574 182 LSETK 186 (482)
Q Consensus 182 ~~~~~ 186 (482)
++...
T Consensus 107 ~a~~~ 111 (121)
T 2bz2_A 107 IARKQ 111 (121)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 98765
No 351
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.4e-15 Score=110.23 Aligned_cols=76 Identities=32% Similarity=0.527 Sum_probs=65.0
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
..++|||+|||+++|+++|+++|++||.|..|+|+.+ ++|||||+|.+.++|++|+. ....+.++.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 5689999999999999999999999999999999864 68999999999999986542 1334589999999887
Q ss_pred Ccc
Q 011574 185 TKN 187 (482)
Q Consensus 185 ~~~ 187 (482)
++.
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 352
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=1.1e-14 Score=128.44 Aligned_cols=79 Identities=24% Similarity=0.392 Sum_probs=70.2
Q ss_pred cCcceEEEecCCCCC---------CHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCcee---
Q 011574 280 SQVKALYVKNIPDNT---------STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI--- 347 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~---------t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~--- 347 (482)
...++|||+||+..+ ++++|+.+|++||.|..|.|+..+ |||||+|.+.++|+.|+..|++..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k----G~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK----NCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG----TEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC----CEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 456899999999988 799999999999999999998654 9999999999999999999999999
Q ss_pred ---------CCcEEEEEEccCCCC
Q 011574 348 ---------DGQVLEVVLAKPQTD 362 (482)
Q Consensus 348 ---------~g~~l~v~~a~~~~~ 362 (482)
.|+.|.|.||+....
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccCCCCEEEEEEccCCCC
Confidence 899999999986643
No 353
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.52 E-value=4.2e-14 Score=109.09 Aligned_cols=79 Identities=15% Similarity=0.255 Sum_probs=68.6
Q ss_pred CcceEEEecCC--CCCC--------HHHHHHHHhcccceeEEEcCCCCCC---C-CcEEEEEeCCHHHHHHHHHHcCCce
Q 011574 281 QVKALYVKNIP--DNTS--------TEKIKELFQRHGEVTKVVMPPGKSG---K-RDFGFIHYAERSSALKAVKDTEKYE 346 (482)
Q Consensus 281 ~~~~l~v~nlp--~~~t--------~~~l~~~F~~~G~v~~v~i~~~~~~---~-kg~afV~f~~~e~A~~A~~~l~~~~ 346 (482)
++++|.|.|+- ..+. .++|+++|++||.|.+|.|++++.+ . +|+|||+|.+.++|.+|+..|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 35789999983 3333 3689999999999999999988753 3 8999999999999999999999999
Q ss_pred eCCcEEEEEEccC
Q 011574 347 IDGQVLEVVLAKP 359 (482)
Q Consensus 347 ~~g~~l~v~~a~~ 359 (482)
|+||+|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999854
No 354
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=3.7e-14 Score=122.80 Aligned_cols=78 Identities=27% Similarity=0.452 Sum_probs=71.8
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~ 185 (482)
.++|||+|||+++|+++|+++|++||.|..|+|+++.. ++++|||||+|.+.++|.+|++.+ +..|.|+.|.|.+...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 48999999999999999999999999999999998865 899999999999999999999654 5689999999998764
No 355
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.51 E-value=5.3e-14 Score=120.67 Aligned_cols=79 Identities=27% Similarity=0.577 Sum_probs=73.2
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcC---CeEEEEe
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK---GKTIRCS 181 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~---g~~l~v~ 181 (482)
..++|||+|||+++|+++|+++|++||.|..|.++.+.. +.++|||||+|.+.++|.+|++.||+..+. +++|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 567899999999999999999999999999999999864 999999999999999999999999998776 4999999
Q ss_pred ecC
Q 011574 182 LSE 184 (482)
Q Consensus 182 ~~~ 184 (482)
++.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 863
No 356
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.50 E-value=7.4e-14 Score=125.17 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=74.3
Q ss_pred ccCcceEEEecCCC-CCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEc
Q 011574 279 ASQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (482)
Q Consensus 279 ~~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a 357 (482)
....++|||+|||. .+++++|+++|++||.|..|.|+.++ ++||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 34568999999999 99999999999999999999999876 589999999999999999999999999999999999
Q ss_pred cCCC
Q 011574 358 KPQT 361 (482)
Q Consensus 358 ~~~~ 361 (482)
.+..
T Consensus 108 ~~~~ 111 (229)
T 2adc_A 108 KHQN 111 (229)
T ss_dssp SCCC
T ss_pred cCcc
Confidence 8654
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.4e-13 Score=108.22 Aligned_cols=85 Identities=26% Similarity=0.340 Sum_probs=71.9
Q ss_pred CCCCCCCEEEECCCCCCCC-----------HHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhC
Q 011574 101 ALPPNGSEVFIGGLPKDAS-----------EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169 (482)
Q Consensus 101 ~~~~~~~~v~v~nLp~~~t-----------~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~ 169 (482)
..+..+++|+|+||....+ +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|++.||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3455789999999944332 5899999999999999966 443 379999999999999999999999
Q ss_pred CCCcCCeEEEEeecCCccee
Q 011574 170 SKELKGKTIRCSLSETKNRL 189 (482)
Q Consensus 170 ~~~~~g~~l~v~~~~~~~~l 189 (482)
+..|.|+.|.|.++.+....
T Consensus 86 g~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TCEETTEECEEEECCSCCCS
T ss_pred CCEECCcEEEEEEeCCCCCc
Confidence 99999999999998775543
No 358
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.48 E-value=7.7e-14 Score=123.15 Aligned_cols=78 Identities=19% Similarity=0.399 Sum_probs=71.2
Q ss_pred CCCCCEEEECCCCCCC---------CHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCc
Q 011574 103 PPNGSEVFIGGLPKDA---------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~---------t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~ 173 (482)
....++|||+|||..+ ++++|+.+|++||.|.+|+|+.+ +|||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567999999999998 79999999999999999999863 78999999999999999999999999
Q ss_pred ------------CCeEEEEeecCCc
Q 011574 174 ------------KGKTIRCSLSETK 186 (482)
Q Consensus 174 ------------~g~~l~v~~~~~~ 186 (482)
.|+.|.|.++...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999999764
No 359
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.47 E-value=8.7e-14 Score=119.34 Aligned_cols=77 Identities=23% Similarity=0.454 Sum_probs=70.9
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
..++|||+|||+++|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 46799999999999999999999999988765 4568999999999999999999999999999999999999987
Q ss_pred Cc
Q 011574 185 TK 186 (482)
Q Consensus 185 ~~ 186 (482)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 360
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.46 E-value=2.4e-14 Score=110.38 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=62.7
Q ss_pred EecCCCCCCHHHHHHHH------------hcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEE
Q 011574 287 VKNIPDNTSTEKIKELF------------QRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353 (482)
Q Consensus 287 v~nlp~~~t~~~l~~~F------------~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~ 353 (482)
+.+|+..+++++|+++| ++||.|.+|.|+++..+. +|||||+|.+.++|.+|+..|||+.|+||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56677777777776666 999999999999887766 99999999999999999999999999999999
Q ss_pred EEEc
Q 011574 354 VVLA 357 (482)
Q Consensus 354 v~~a 357 (482)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.45 E-value=1.9e-13 Score=105.46 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=71.0
Q ss_pred CCCEEEECCC--CCCCC--------HHHHHHhhccCCCeeEEEEeccCCC--CCccceEEEEeCCHHHHHHHHHHhCCCC
Q 011574 105 NGSEVFIGGL--PKDAS--------EEDLRDLCEPIGDVFEVRLMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSKE 172 (482)
Q Consensus 105 ~~~~v~v~nL--p~~~t--------~~~l~~~f~~~G~v~~v~~~~~~~~--g~~~g~afV~f~~~e~A~~al~~l~~~~ 172 (482)
++++|.|.|+ |.++. +++|++.|++||.|.+|+|+++..+ ++++|+|||+|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678999998 44443 3689999999999999999988764 3689999999999999999999999999
Q ss_pred cCCeEEEEeecCC
Q 011574 173 LKGKTIRCSLSET 185 (482)
Q Consensus 173 ~~g~~l~v~~~~~ 185 (482)
|.||.|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998753
No 362
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.45 E-value=1.3e-13 Score=120.80 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=72.5
Q ss_pred cceEEEecCCC-CCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCC
Q 011574 282 VKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (482)
Q Consensus 282 ~~~l~v~nlp~-~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (482)
.++|||+|||. .+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|.+|+..||+..|.|++|.|.++...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 37999999999 99999999999999999999999876 589999999999999999999999999999999999865
Q ss_pred C
Q 011574 361 T 361 (482)
Q Consensus 361 ~ 361 (482)
.
T Consensus 80 ~ 80 (198)
T 1qm9_A 80 N 80 (198)
T ss_dssp S
T ss_pred C
Confidence 4
No 363
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.45 E-value=3.1e-13 Score=123.65 Aligned_cols=76 Identities=29% Similarity=0.472 Sum_probs=71.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccC
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (482)
...++|||+|||+.+|+++|+++|++||.|..|.|.+++ |||||+|.+.++|.+|+..||+..|.|++|.|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k----g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR----GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTT----TEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC----cEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 445799999999999999999999999999999997654 9999999999999999999999999999999999865
No 364
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.43 E-value=2.1e-13 Score=107.20 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=68.3
Q ss_pred CcceEEEecCCC--CC---CHHHHHHHHhcccceeEEEcCCCCCC-----C-CcEEEEEeCCHHHHHHHHHHcCCceeCC
Q 011574 281 QVKALYVKNIPD--NT---STEKIKELFQRHGEVTKVVMPPGKSG-----K-RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (482)
Q Consensus 281 ~~~~l~v~nlp~--~~---t~~~l~~~F~~~G~v~~v~i~~~~~~-----~-kg~afV~f~~~e~A~~A~~~l~~~~~~g 349 (482)
++++|+|.||-. .+ .+++|++.|++||.|.+|.|+.++.+ . +|++||+|.+.++|.+|+..|||+.|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 458999999842 22 36899999999999999999987542 2 7999999999999999999999999999
Q ss_pred cEEEEEEccC
Q 011574 350 QVLEVVLAKP 359 (482)
Q Consensus 350 ~~l~v~~a~~ 359 (482)
|.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999853
No 365
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=9.2e-13 Score=100.05 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEccCCCC
Q 011574 292 DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (482)
Q Consensus 292 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 362 (482)
..+++++|+++|++||.|..|.|+. ..+|||||+|.+.++|.+||..++ .+.+++|+|.|+.++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCC
Confidence 4689999999999999999999983 237999999999999999999754 46899999999987653
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.41 E-value=5.4e-13 Score=104.82 Aligned_cols=82 Identities=20% Similarity=0.333 Sum_probs=71.8
Q ss_pred CCCCEEEECCCCC--CC---CHHHHHHhhccCCCeeEEEEeccCC----CCCccceEEEEeCCHHHHHHHHHHhCCCCcC
Q 011574 104 PNGSEVFIGGLPK--DA---SEEDLRDLCEPIGDVFEVRLMKDKE----SGESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (482)
Q Consensus 104 ~~~~~v~v~nLp~--~~---t~~~l~~~f~~~G~v~~v~~~~~~~----~g~~~g~afV~f~~~e~A~~al~~l~~~~~~ 174 (482)
+.+++|+|+|+-. ++ .+++|++.|++||.|.+|+|+++.. +++++|++||+|.+.++|.+|++.|||..|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3678999999942 22 3689999999999999999998865 4578899999999999999999999999999
Q ss_pred CeEEEEeecCC
Q 011574 175 GKTIRCSLSET 185 (482)
Q Consensus 175 g~~l~v~~~~~ 185 (482)
||.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999998753
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.39 E-value=1.3e-13 Score=106.14 Aligned_cols=72 Identities=28% Similarity=0.443 Sum_probs=63.1
Q ss_pred ECCCCCCCCHHHHHHhh------------ccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEE
Q 011574 111 IGGLPKDASEEDLRDLC------------EPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (482)
Q Consensus 111 v~nLp~~~t~~~l~~~f------------~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l 178 (482)
+.+||+.+++++|+++| ++||.|.+|+|+++.. ++++|||||+|.+.++|.+|++.|||..|.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666777777776666 9999999999998765 7899999999999999999999999999999999
Q ss_pred EEeec
Q 011574 179 RCSLS 183 (482)
Q Consensus 179 ~v~~~ 183 (482)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=1.9e-12 Score=100.88 Aligned_cols=76 Identities=12% Similarity=0.239 Sum_probs=66.0
Q ss_pred CcceEEEecCCCCCC----------HHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCc
Q 011574 281 QVKALYVKNIPDNTS----------TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ 350 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t----------~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~ 350 (482)
++++|.+.||-.... +++|++.|++||.|.+|.|+++. .+|||||+|.+.++|.+|+..|||+.|+||
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 457899999853322 25789999999999999998764 379999999999999999999999999999
Q ss_pred EEEEEEcc
Q 011574 351 VLEVVLAK 358 (482)
Q Consensus 351 ~l~v~~a~ 358 (482)
.|+|.|+.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999985
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.33 E-value=3.5e-12 Score=118.92 Aligned_cols=75 Identities=21% Similarity=0.412 Sum_probs=65.8
Q ss_pred cCcceEEEec--CCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeC---Cc--EE
Q 011574 280 SQVKALYVKN--IPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID---GQ--VL 352 (482)
Q Consensus 280 ~~~~~l~v~n--lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~---g~--~l 352 (482)
.+.++|||+| |++.+|+++|+++|++||.|..|.|+.. ||||||+|.+.++|++||+.|||..+- |+ +|
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~----kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT----CSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 4458999999 5789999999999999999999998764 499999999999999999999999873 44 67
Q ss_pred EEEEcc
Q 011574 353 EVVLAK 358 (482)
Q Consensus 353 ~v~~a~ 358 (482)
.|.|+.
T Consensus 92 y~~~~~ 97 (345)
T 3tht_A 92 YLNFVE 97 (345)
T ss_dssp EEEECS
T ss_pred EEEEee
Confidence 888874
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.8e-11 Score=91.81 Aligned_cols=74 Identities=20% Similarity=0.204 Sum_probs=62.4
Q ss_pred CCEEEECCCC-------CCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEE
Q 011574 106 GSEVFIGGLP-------KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (482)
Q Consensus 106 ~~~v~v~nLp-------~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l 178 (482)
..+|.|.-.. .++|+++|+++|++||.|..|.|+ ++++|||||+|.+.++|.+|++.++ .+.++.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 4567666554 458999999999999999999997 3679999999999999999997644 4689999
Q ss_pred EEeecCCc
Q 011574 179 RCSLSETK 186 (482)
Q Consensus 179 ~v~~~~~~ 186 (482)
+|.++...
T Consensus 83 ~V~~a~~~ 90 (100)
T 2d9o_A 83 KISWLEGQ 90 (100)
T ss_dssp EEECSSCC
T ss_pred EEEEccCC
Confidence 99998754
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.24 E-value=3.6e-11 Score=93.64 Aligned_cols=78 Identities=21% Similarity=0.326 Sum_probs=66.5
Q ss_pred CCCCCEEEECCCCCCC----------CHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCC
Q 011574 103 PPNGSEVFIGGLPKDA----------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~----------t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~ 172 (482)
+..+++|.|.|+=... .+++|++.|++||.|.+|.|.++. ++|++||+|.+.++|.+|++.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3467789999984322 235789999999999999997653 48999999999999999999999999
Q ss_pred cCCeEEEEeecC
Q 011574 173 LKGKTIRCSLSE 184 (482)
Q Consensus 173 ~~g~~l~v~~~~ 184 (482)
|.||.|.|.++.
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999999875
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=4.9e-11 Score=86.37 Aligned_cols=73 Identities=21% Similarity=0.291 Sum_probs=62.9
Q ss_pred CcceEEEecCCC----CCCH----HHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEE
Q 011574 281 QVKALYVKNIPD----NTST----EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352 (482)
Q Consensus 281 ~~~~l~v~nlp~----~~t~----~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l 352 (482)
+..+|+|.-++. .+.+ .+|.+.|++||.|..++|..++ +||+|.+.++|.+||. |||..|+||.|
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 346788887762 3333 6789999999999999999876 8999999999999998 99999999999
Q ss_pred EEEEccCC
Q 011574 353 EVVLAKPQ 360 (482)
Q Consensus 353 ~v~~a~~~ 360 (482)
+|+++++.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99999764
No 373
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.20 E-value=2.5e-11 Score=113.19 Aligned_cols=77 Identities=23% Similarity=0.331 Sum_probs=65.5
Q ss_pred CCCCCCEEEECC--CCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCc---CCe
Q 011574 102 LPPNGSEVFIGG--LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL---KGK 176 (482)
Q Consensus 102 ~~~~~~~v~v~n--Lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~---~g~ 176 (482)
....+.+|||+| |++.+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||..+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 345678999999 578999999999999999999988754 478999999999999999999999987 345
Q ss_pred --EEEEeecC
Q 011574 177 --TIRCSLSE 184 (482)
Q Consensus 177 --~l~v~~~~ 184 (482)
.|.|.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 56666653
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=9.4e-11 Score=91.13 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=68.1
Q ss_pred cCcceEEEecCCCC-CCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCC-HHHHHHHHHHcC--CceeCCcEEEEE
Q 011574 280 SQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAE-RSSALKAVKDTE--KYEIDGQVLEVV 355 (482)
Q Consensus 280 ~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~-~e~A~~A~~~l~--~~~~~g~~l~v~ 355 (482)
.....|+|+||+.. ++.++|+++|++||.|..|.+..+. ..|||+|.+ ..+|..|+..|| +..|++..++|.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 44579999999999 9999999999999999999999887 579999999 899999999995 778999999998
Q ss_pred Ecc
Q 011574 356 LAK 358 (482)
Q Consensus 356 ~a~ 358 (482)
+..
T Consensus 92 vL~ 94 (121)
T 1owx_A 92 VLE 94 (121)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.6e-10 Score=89.81 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=67.4
Q ss_pred CCCCCCEEEECCCCCC-CCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCC-HHHHHHHHHHhC--CCCcCCeE
Q 011574 102 LPPNGSEVFIGGLPKD-ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRS-KEFAKKAIDELH--SKELKGKT 177 (482)
Q Consensus 102 ~~~~~~~v~v~nLp~~-~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~-~e~A~~al~~l~--~~~~~g~~ 177 (482)
.-+.++.|+|+||+.+ ++.++|+++|++||.|..|.+..+.. .|||+|.+ ..+|..|+..++ +..|.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4457899999999999 99999999999999999999988765 69999999 899999999985 67788888
Q ss_pred EEEeec
Q 011574 178 IRCSLS 183 (482)
Q Consensus 178 l~v~~~ 183 (482)
+++...
T Consensus 88 ~~~evL 93 (121)
T 1owx_A 88 VTWEVL 93 (121)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 887654
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=2.5e-10 Score=82.67 Aligned_cols=74 Identities=24% Similarity=0.412 Sum_probs=63.1
Q ss_pred CCCCEEEECCCCC----CCCH----HHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCC
Q 011574 104 PNGSEVFIGGLPK----DASE----EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (482)
Q Consensus 104 ~~~~~v~v~nLp~----~~t~----~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g 175 (482)
+...||+|.-+|. ++-. .+|.+.|++||.|..++++.++ +||+|.+.++|.+||+ ||+..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4567888888772 3333 5788999999999999999873 8999999999999997 99999999
Q ss_pred eEEEEeecCCc
Q 011574 176 KTIRCSLSETK 186 (482)
Q Consensus 176 ~~l~v~~~~~~ 186 (482)
|.|+|..+.+.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999988653
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=6.3e-10 Score=80.87 Aligned_cols=73 Identities=12% Similarity=0.237 Sum_probs=62.5
Q ss_pred cCcceEEEecCCCC-----CCH----HHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCc
Q 011574 280 SQVKALYVKNIPDN-----TST----EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ 350 (482)
Q Consensus 280 ~~~~~l~v~nlp~~-----~t~----~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~ 350 (482)
++..+|+|.-++.. +.+ .+|.+.|++||.|..|+|..++ +||+|.+.++|.+||+ |||..|+||
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 34478999988743 222 5689999999999999998876 9999999999999999 999999999
Q ss_pred EEEEEEccC
Q 011574 351 VLEVVLAKP 359 (482)
Q Consensus 351 ~l~v~~a~~ 359 (482)
.|+|++..+
T Consensus 86 ~L~V~~k~~ 94 (95)
T 1ufw_A 86 AVKISGPSS 94 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEeccCC
Confidence 999998653
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=1.2e-09 Score=79.37 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=63.4
Q ss_pred CCCCCCCEEEECCCCCC-----CCH----HHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q 011574 101 ALPPNGSEVFIGGLPKD-----ASE----EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171 (482)
Q Consensus 101 ~~~~~~~~v~v~nLp~~-----~t~----~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~ 171 (482)
..-+...||+|.-++.. +-. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||+ ||+.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe
Confidence 34556788999998743 322 4688999999999999999873 9999999999999997 9999
Q ss_pred CcCCeEEEEeecC
Q 011574 172 ELKGKTIRCSLSE 184 (482)
Q Consensus 172 ~~~g~~l~v~~~~ 184 (482)
.+.||.|+|....
T Consensus 81 ~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 81 KVKGRAVKISGPS 93 (95)
T ss_dssp EETTEEEEEECCC
T ss_pred eeCCeEEEEeccC
Confidence 9999999998643
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.78 E-value=2.5e-08 Score=73.72 Aligned_cols=71 Identities=14% Similarity=0.190 Sum_probs=66.8
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcc-----cceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEE
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRH-----GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~-----G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~ 356 (482)
.++|-+-|||..+++..|+.+.+++ |.|+.|.+..+.. =|+|+|.+...|-+|.-.|+|..|.|++|+|.-
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~----GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN----GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT----EEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC----ceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 4799999999999999999999999 9999999999984 499999999999999999999999999999854
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.76 E-value=7.3e-09 Score=92.00 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHhcccceeEEEcCCCCCC-----C-CcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 293 NTSTEKIKELFQRHGEVTKVVMPPGKSG-----K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 293 ~~t~~~l~~~F~~~G~v~~v~i~~~~~~-----~-kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
.-.+++|++.|++||.|.+|.|+++..+ . +|++||+|.+.++|.+|+..|||+.|+||+|.|.++.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3456889999999999999999855432 4 8999999999999999999999999999999999975
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.69 E-value=3.2e-08 Score=87.84 Aligned_cols=81 Identities=20% Similarity=0.330 Sum_probs=67.7
Q ss_pred CCCCEEEECCCCC-----CCCHHHHHHhhccCCCeeEEEEeccCC----CCCccceEEEEeCCHHHHHHHHHHhCCCCcC
Q 011574 104 PNGSEVFIGGLPK-----DASEEDLRDLCEPIGDVFEVRLMKDKE----SGESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (482)
Q Consensus 104 ~~~~~v~v~nLp~-----~~t~~~l~~~f~~~G~v~~v~~~~~~~----~g~~~g~afV~f~~~e~A~~al~~l~~~~~~ 174 (482)
.....+.+.|+-. +-.+++|++.|++||.|.+|.|+++.. +++++|++||+|.+.++|.+|++.|||..+.
T Consensus 122 ~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~ 201 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 201 (222)
T ss_dssp CBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred cccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC
Confidence 3455666665532 345678999999999999999986544 4589999999999999999999999999999
Q ss_pred CeEEEEeecC
Q 011574 175 GKTIRCSLSE 184 (482)
Q Consensus 175 g~~l~v~~~~ 184 (482)
||.|.|.+..
T Consensus 202 gr~i~~~~~~ 211 (222)
T 3dxb_A 202 GRKVVAEVYD 211 (222)
T ss_dssp SSBCEEEECC
T ss_pred CeEEEEEEcC
Confidence 9999999875
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.50 E-value=7.1e-07 Score=66.03 Aligned_cols=72 Identities=22% Similarity=0.283 Sum_probs=66.9
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccC-----CCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEE
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPI-----GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~-----G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~ 179 (482)
..++|-|-|||..++...|+.++..+ |.|..|.+..+.. -|+|+|.+...|-+|.-.|+|..|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47899999999999999999999999 9999999998854 699999999999999889999999999999
Q ss_pred Eee
Q 011574 180 CSL 182 (482)
Q Consensus 180 v~~ 182 (482)
|..
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 874
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=3.4e-06 Score=62.10 Aligned_cols=86 Identities=22% Similarity=0.319 Sum_probs=72.8
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhcc---C--CCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEE
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEP---I--GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~---~--G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~ 179 (482)
...+|.|.|||..+.++.|.-+|++ - |.|..|.... ..|+|+|.+.+.|++.|+ ...+.|++..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 4578999999999999999999976 2 4899998865 269999999999999994 357899999999
Q ss_pred EeecC--CcceeeeCCCCCCCC
Q 011574 180 CSLSE--TKNRLFIGNVPKNWT 199 (482)
Q Consensus 180 v~~~~--~~~~l~v~nLp~~~t 199 (482)
|.+.. ...+|++.+|++.+.
T Consensus 78 V~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCCCCCCCCCCSCCCCCC
T ss_pred EEcCCCCCcceEeeecCCCCCC
Confidence 98765 457899999998765
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.98 E-value=3e-05 Score=57.41 Aligned_cols=76 Identities=20% Similarity=0.138 Sum_probs=63.4
Q ss_pred cceEEEecCCCCC-C----HHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEE
Q 011574 282 VKALYVKNIPDNT-S----TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (482)
Q Consensus 282 ~~~l~v~nlp~~~-t----~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~ 356 (482)
.++|+|.||+..+ . .+.++.+|.+|+.+......+.- .-..|.|.+.++|.+|-..|++..|.|+.|+|-|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF----KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT----TEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc----eEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 3789999998655 2 25789999999988877666554 2478999999999999999999999999999999
Q ss_pred ccCCC
Q 011574 357 AKPQT 361 (482)
Q Consensus 357 a~~~~ 361 (482)
+.+-.
T Consensus 81 gq~~~ 85 (104)
T 1wey_A 81 AQTLH 85 (104)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 97443
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=0.00026 Score=52.10 Aligned_cols=74 Identities=20% Similarity=0.265 Sum_probs=62.8
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcc-----cceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEE
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRH-----GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~-----G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~ 356 (482)
.++|.|.|||..+.++.|.-+|++- |.|..|.... .-|+|+|.+...|++.|+ -..|.|++.+|.|..
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLA-QADHELHGAQLSLRP 80 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEc
Confidence 4799999999999999999999872 5899988765 359999999999999997 347899999999988
Q ss_pred ccCCCC
Q 011574 357 AKPQTD 362 (482)
Q Consensus 357 a~~~~~ 362 (482)
..++..
T Consensus 81 ~~~~~~ 86 (104)
T 2dhx_A 81 APPRAP 86 (104)
T ss_dssp CCCCCC
T ss_pred CCCCCc
Confidence 766544
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.75 E-value=4.3e-05 Score=56.59 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=63.3
Q ss_pred CCEEEECCCCCCC-C----HHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEE
Q 011574 106 GSEVFIGGLPKDA-S----EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (482)
Q Consensus 106 ~~~v~v~nLp~~~-t----~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v 180 (482)
.++|+|.||+.++ + .+.|+.+|..|+++......+.-. =..|.|.++++|.+|...||+..+.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999998865 2 257899999999999888877643 4899999999999999999999999999999
Q ss_pred eecC
Q 011574 181 SLSE 184 (482)
Q Consensus 181 ~~~~ 184 (482)
.++.
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 8876
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.72 E-value=0.00012 Score=53.47 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=56.3
Q ss_pred CEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCC--ccceEEEEeCCHHHHHHHHHHhCCCCcCC
Q 011574 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE--SKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~--~~g~afV~f~~~e~A~~al~~l~~~~~~g 175 (482)
+.|.|++||+.+|++++.+.+..+..+.....+.-+.+.. ...-|||.|.+.+++......++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4699999999999999999999998877777665443322 22359999999999999999999988743
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.58 E-value=0.00041 Score=50.54 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=60.1
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC----CcEEEEEeCCHHHHHHHHHHcCCceeCC-----cEEE
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTEKYEIDG-----QVLE 353 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~----kg~afV~f~~~e~A~~A~~~l~~~~~~g-----~~l~ 353 (482)
++|.|++||+.+|++++.+.++....+........+... -.-|+|.|.+.+++......++|+.|-+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 589999999999999999999998877766655444211 3569999999999999999999998754 2345
Q ss_pred EEEcc
Q 011574 354 VVLAK 358 (482)
Q Consensus 354 v~~a~ 358 (482)
|.+|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66653
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.51 E-value=0.00048 Score=52.57 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=59.5
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCC-cEEEEEEcc
Q 011574 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG-QVLEVVLAK 358 (482)
Q Consensus 280 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g-~~l~v~~a~ 358 (482)
...+-|.|-+.|... ...|...|++||.|.+...... ..+-.|+|.+..+|++||. .||..|.+ ..|-|....
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~----~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT----GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS----SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC----CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 345789999999875 5667889999999998887322 3799999999999999999 69999985 667777653
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.49 E-value=0.00028 Score=51.21 Aligned_cols=58 Identities=24% Similarity=0.434 Sum_probs=47.3
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhC
Q 011574 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169 (482)
Q Consensus 103 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~ 169 (482)
+...+.++| +.|+.+...||.++|+.||. ..|+.+-|- .|||.|.+++.|..|+..+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 444566777 99999999999999999994 345555543 69999999999999998764
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.19 E-value=0.0014 Score=49.98 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=58.5
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCC-eEEEEeec
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG-KTIRCSLS 183 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g-~~l~v~~~ 183 (482)
..+.|.|-+.|+.. ...|..+|++||.|.+...... ..+-.|.|.++.+|++|| ..|+..|.+ .-|-|.++
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEEC
Confidence 45789999999985 5678889999999998887222 348999999999999999 559999975 66777775
Q ss_pred C
Q 011574 184 E 184 (482)
Q Consensus 184 ~ 184 (482)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.04 E-value=0.00065 Score=49.50 Aligned_cols=54 Identities=26% Similarity=0.431 Sum_probs=44.7
Q ss_pred CEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhC
Q 011574 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169 (482)
Q Consensus 107 ~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~ 169 (482)
+.++| ++|+.+...||..+|+.||. ..|+.+-|- .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34555 99999999999999999993 456655543 69999999999999998765
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.96 E-value=0.0025 Score=46.61 Aligned_cols=76 Identities=11% Similarity=0.114 Sum_probs=56.5
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCC----CcEEEEEeCCHHHHHHHHHHcCCceeCC-----cEE
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTEKYEIDG-----QVL 352 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~----kg~afV~f~~~e~A~~A~~~l~~~~~~g-----~~l 352 (482)
+-+|.|+.||+.+|++++.+.++..=.+........+... -.-|+|.|.+.++.....+.++|+.|-+ -+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 4689999999999999988888776555444433333211 2458999999999999999999998754 345
Q ss_pred EEEEc
Q 011574 353 EVVLA 357 (482)
Q Consensus 353 ~v~~a 357 (482)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 56666
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.96 E-value=0.00089 Score=49.01 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=50.2
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCC--ccceEEEEeCCHHHHHHHHHHhCCCCcC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE--SKGFAFVSFRSKEFAKKAIDELHSKELK 174 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~--~~g~afV~f~~~e~A~~al~~l~~~~~~ 174 (482)
+-.|.||.||+.+|++++.+.+..+-.+.....+.-+.+-. .-.-|||.|.+.+++....+.+++..|.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 44699999999999999998888765543333332222111 1234999999999999999999987764
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.93 E-value=0.00086 Score=51.86 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=56.9
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeE-EEcCCCC-------------CC--CCcEEEEEeCCHHHHHHHHHHcCCce
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGK-------------SG--KRDFGFIHYAERSSALKAVKDTEKYE 346 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~-v~i~~~~-------------~~--~kg~afV~f~~~e~A~~A~~~l~~~~ 346 (482)
.-|.|-+.|...+.. |.+.|++||.|.. +.+.+.. .. ...+..|+|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 578888998766554 6688999999876 3332210 00 14688999999999999999 69999
Q ss_pred eCCcEEEEEEccC
Q 011574 347 IDGQVLEVVLAKP 359 (482)
Q Consensus 347 ~~g~~l~v~~a~~ 359 (482)
|+|..|-|....+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999888888753
No 396
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.91 E-value=0.0022 Score=46.59 Aligned_cols=54 Identities=19% Similarity=0.339 Sum_probs=43.7
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcC
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~ 343 (482)
..++| ++|..+...||.++|+.||.| .|..+.+ ..|||.|.+++.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-----TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-----TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-----CeEEEEecCHHHHHHHHHhcc
Confidence 55666 999999999999999999843 3333334 479999999999999998663
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.68 E-value=0.0022 Score=46.71 Aligned_cols=54 Identities=19% Similarity=0.336 Sum_probs=44.2
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcC
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~ 343 (482)
..++| ++|..+...||.++|+.||.| .|..+.+ ..|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-----TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-----CeEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999833 4444444 479999999999999999764
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.88 E-value=0.008 Score=46.49 Aligned_cols=78 Identities=9% Similarity=0.166 Sum_probs=55.4
Q ss_pred CCCEEEECCCCCCCCHHHHHHhhccCCCeeEEE-Eec------------cCCCC-CccceEEEEeCCHHHHHHHHHHhCC
Q 011574 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR-LMK------------DKESG-ESKGFAFVSFRSKEFAKKAIDELHS 170 (482)
Q Consensus 105 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~-~~~------------~~~~g-~~~g~afV~f~~~e~A~~al~~l~~ 170 (482)
..+.|.|-+.|.+.+. .|.++|++||.|.+-. +.. .+... ....+..|+|.++.+|.+|| ..||
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence 3467889999877655 5667999999986621 111 00000 12457899999999999999 5599
Q ss_pred CCcCCeEEEEeecC
Q 011574 171 KELKGKTIRCSLSE 184 (482)
Q Consensus 171 ~~~~g~~l~v~~~~ 184 (482)
..|.|.-|-|.+..
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988888765
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.74 E-value=0.0052 Score=59.31 Aligned_cols=54 Identities=9% Similarity=0.266 Sum_probs=42.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~ 340 (482)
+.|+|. .|..+++.+|.++|++||.|.++.+..++. .||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHh
Confidence 789997 799999999999999999999999887653 799999999999887765
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.34 E-value=0.0081 Score=57.97 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=42.8
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHH
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~ 166 (482)
.++|+|. .|..+++.+|.++|++||+|.++.+..++ .-||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4789997 79999999999999999999999998754 2599999999999997763
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.59 E-value=1.4 Score=43.37 Aligned_cols=56 Identities=23% Similarity=0.388 Sum_probs=45.2
Q ss_pred CCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q 011574 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (482)
Q Consensus 106 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~ 170 (482)
...++|+ +|..+...+|.++|+.||. ..|+.+-+ ..|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 3456665 9999999999999999995 45555443 2699999999999999998864
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.55 E-value=2.1 Score=42.11 Aligned_cols=56 Identities=18% Similarity=0.295 Sum_probs=45.1
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCC
Q 011574 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344 (482)
Q Consensus 282 ~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~ 344 (482)
...++|+ +|..+...+|.++|+.||.| .|..+.+ ..|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-----t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-----SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-----CeEEEEECCHHHHHHHHHHHHh
Confidence 3566666 88899999999999999954 5554444 4799999999999999998753
No 403
>4fdd_B RNA-binding protein FUS; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens}
Probab=76.41 E-value=2.2 Score=22.65 Aligned_cols=11 Identities=45% Similarity=0.909 Sum_probs=7.3
Q ss_pred CCCCCCCCCCC
Q 011574 472 DGNRGRRYRPY 482 (482)
Q Consensus 472 ~~~~g~r~~~y 482 (482)
.....+|.|||
T Consensus 19 d~R~drr~rpy 29 (29)
T 4fdd_B 19 EHRQDRRERPY 29 (29)
T ss_pred cchhhcccCCC
Confidence 33445688998
No 404
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=74.34 E-value=0.64 Score=43.59 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=7.9
Q ss_pred CCCHHHHHHHHhc
Q 011574 293 NTSTEKIKELFQR 305 (482)
Q Consensus 293 ~~t~~~l~~~F~~ 305 (482)
.+++++|+++...
T Consensus 228 ~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 228 TVTLELLDELTHE 240 (358)
T ss_dssp SCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 4567777666553
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=72.06 E-value=23 Score=24.85 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=47.6
Q ss_pred CCCCEEEECCCCCCCCHHHHHHhhccCCCeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q 011574 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (482)
Q Consensus 104 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~ 170 (482)
...|-|.|-|+|..+-..++.-.....|--..|..+ .|.|.|.|.+.++...|+..|-+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHh
Confidence 356889999999999999988888888865555554 35799999999999999987644
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=68.72 E-value=9.1 Score=26.25 Aligned_cols=59 Identities=8% Similarity=0.165 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHhccc-----ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCceeCCcEEEEEEcc
Q 011574 293 NTSTEKIKELFQRHG-----EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (482)
Q Consensus 293 ~~t~~~l~~~F~~~G-----~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (482)
.+..-+|..++..-+ .|-.|.|.. .|.||+-. ...|..++..|++..+.|+.+.|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d------~~s~v~v~-~~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD------NASYVEIL-NGKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS------SCEEEEEC-TTCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC------CcEEEEEC-HHHHHHHHHHhccccCcCceEEEEECC
Confidence 455566666666543 455777754 46899884 566788888899999999999998764
No 407
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=63.06 E-value=21 Score=24.33 Aligned_cols=59 Identities=14% Similarity=0.289 Sum_probs=37.8
Q ss_pred CCCHHHHHHhhccCC-----CeeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecC
Q 011574 117 DASEEDLRDLCEPIG-----DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (482)
Q Consensus 117 ~~t~~~l~~~f~~~G-----~v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~ 184 (482)
.++..+|..++..-+ .|-.|.+..+ |.||+..... |..+++.|++..+.|+.+.|..+.
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 456677777775443 4566666433 7888887654 667888889999999999887653
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=56.74 E-value=12 Score=30.29 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=35.9
Q ss_pred ceEEEecCCC-C--------CCHHHHHHHH--hcccceeEEEcCCCCCCCCcEEEEEeCCHH
Q 011574 283 KALYVKNIPD-N--------TSTEKIKELF--QRHGEVTKVVMPPGKSGKRDFGFIHYAERS 333 (482)
Q Consensus 283 ~~l~v~nlp~-~--------~t~~~l~~~F--~~~G~v~~v~i~~~~~~~kg~afV~f~~~e 333 (482)
..+.|-|+|. . .+...|++.| +.|..+. |+...+..+..|+|.|.|.+--
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCCh
Confidence 5678888886 2 3447899977 9997755 5555555555789999998543
No 409
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=54.84 E-value=26 Score=24.76 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=39.9
Q ss_pred eEEEecCCCCCCHHHHHHHHhc-cc-ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 011574 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (482)
Q Consensus 284 ~l~v~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~ 341 (482)
+.++-.+....+..+|++.+++ |+ .|..|.....+.+ ..-|||++..-.+|.....+
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~-~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRG-EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTS-CEEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCC-ceEEEEEcCCCCcHHHHHHh
Confidence 4566667778999999998887 66 5667755443332 23599999887777765544
No 410
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=50.29 E-value=62 Score=22.62 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=50.2
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHHcCCc-------eeCCcEEE
Q 011574 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY-------EIDGQVLE 353 (482)
Q Consensus 281 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~l~~~-------~~~g~~l~ 353 (482)
+.+-|.|-|+|..+-..++.-.....|---.|..+. |.|.|.|.+.++...||.+|-++ .|.|..+.
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid------gqamirfqnsdeqrlaiqkllnhnnnklqieirgqicd 84 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICD 84 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeee
Confidence 346788999999998888776666677655665443 56999999999999999886221 35566655
Q ss_pred EE
Q 011574 354 VV 355 (482)
Q Consensus 354 v~ 355 (482)
|-
T Consensus 85 vi 86 (129)
T 4eyt_A 85 VI 86 (129)
T ss_dssp EE
T ss_pred ee
Confidence 53
No 411
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=37.32 E-value=7.3 Score=39.14 Aligned_cols=11 Identities=9% Similarity=0.036 Sum_probs=5.0
Q ss_pred CHHHHHHHHHH
Q 011574 157 SKEFAKKAIDE 167 (482)
Q Consensus 157 ~~e~A~~al~~ 167 (482)
+++-+.+.+..
T Consensus 414 ~~~~~~~Fl~~ 424 (649)
T 3tj1_A 414 QLELMDSFLVT 424 (649)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 34445444433
No 412
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=37.25 E-value=7.3 Score=42.48 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=12.3
Q ss_pred ceEEEEeCCHHHHHHHHHHh
Q 011574 149 GFAFVSFRSKEFAKKAIDEL 168 (482)
Q Consensus 149 g~afV~f~~~e~A~~al~~l 168 (482)
+.++|...+.+-|......+
T Consensus 228 ~rvlvl~PtraLa~Q~~~~l 247 (1108)
T 3l9o_A 228 QRVIYTSPIKALSNQKYREL 247 (1108)
T ss_dssp CEEEEEESSHHHHHHHHHHH
T ss_pred CeEEEEcCcHHHHHHHHHHH
Confidence 34677777776666655443
No 413
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=37.03 E-value=60 Score=26.33 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=37.6
Q ss_pred EEEECCCCC-C--------CCHHHHHHhh--ccCCCeeEEEEeccCCCCCccceEEEEeCCH-HHHHHHH
Q 011574 108 EVFIGGLPK-D--------ASEEDLRDLC--EPIGDVFEVRLMKDKESGESKGFAFVSFRSK-EFAKKAI 165 (482)
Q Consensus 108 ~v~v~nLp~-~--------~t~~~l~~~f--~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~-e~A~~al 165 (482)
++.|-|+|. . .....|++.| +.|.++. |+.+..+. -..|+|.|.|.+- .--..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHH
Confidence 577888887 2 3457899977 9998865 55555443 3678999999864 3444454
No 414
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=35.24 E-value=49 Score=23.28 Aligned_cols=55 Identities=13% Similarity=0.158 Sum_probs=37.3
Q ss_pred eEEEecCCCCCCHHHHHHHHhc-cc-ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHH
Q 011574 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (482)
Q Consensus 284 ~l~v~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~ 339 (482)
+-++-.++...|..+|++.+++ |+ .|..|....-+.+ ..-|+|++..-.+|....
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~-~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDG-EKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTS-SEEEEEEECTTSCHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCC-ceEEEEEECCCCcHHHHH
Confidence 4556667788999999998887 56 5666654443322 235999998766665543
No 415
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=35.11 E-value=8 Score=29.46 Aligned_cols=8 Identities=0% Similarity=0.289 Sum_probs=3.6
Q ss_pred EEEEEeCC
Q 011574 324 FGFIHYAE 331 (482)
Q Consensus 324 ~afV~f~~ 331 (482)
..||...+
T Consensus 65 I~~I~~pd 72 (119)
T 1b34_A 65 IRYFILPD 72 (119)
T ss_dssp EEEEECCT
T ss_pred EEEEEecc
Confidence 44454443
No 416
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=31.61 E-value=64 Score=25.41 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=38.3
Q ss_pred eEEEecCCCCCCHHHHHHHHhc-cc-ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 011574 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (482)
Q Consensus 284 ~l~v~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~ 341 (482)
+.++--+....+..+|++.++. |+ .|..|....-..+. --|||++..-.+|......
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~-KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGN-KKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSC-EEEEEEECSSSCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCc-EEEEEEcCCCCcHHHHHHh
Confidence 4555566778899999988877 55 56677554444332 3599999877777665443
No 417
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=30.78 E-value=64 Score=25.19 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=38.1
Q ss_pred eEEEecCCCCCCHHHHHHHHhc-cc-ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 011574 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (482)
Q Consensus 284 ~l~v~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~ 340 (482)
+.++--+....+..+|++.++. |+ .|..|....-..+. --|||++..-.+|.....
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~-KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGT-KKAYVRLTADYDALDIAN 137 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSC-EEEEEEECTTCCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCc-eEEEEEeCCCCcHHHHHH
Confidence 4556666778999999988877 55 56677554444332 359999987767766544
No 418
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=29.65 E-value=1.5e+02 Score=20.99 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=35.6
Q ss_pred eeEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhCCCCcCCeEEEEeecCCcceeeeCCCCCCCCHHHHHHHHh
Q 011574 133 VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIE 208 (482)
Q Consensus 133 v~~v~~~~~~~~g~~~g~afV~f~~~e~A~~al~~l~~~~~~g~~l~v~~~~~~~~l~v~nLp~~~t~~~l~~~f~ 208 (482)
|.+|.+... ..||.||++...++...++....+ -+-||++ .++.+++..++.
T Consensus 40 i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~g----------------V~gfvg~---pl~~~Ev~~il~ 91 (92)
T 3lpe_A 40 VYSILASES-----LKGYVLVEAETKGDVEELIKGMPR----------------VRGIVPG---TIAIEEIEPLLT 91 (92)
T ss_dssp EEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTT----------------EEEECSS---CCCHHHHHHHHC
T ss_pred EEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCC----------------ceEeCCC---CCCHHHHHHHhC
Confidence 566665432 689999999999988888855433 1234443 677888877764
No 419
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=26.27 E-value=1.4e+02 Score=19.44 Aligned_cols=54 Identities=9% Similarity=0.071 Sum_probs=40.9
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcccceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 011574 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (482)
Q Consensus 283 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~~ 341 (482)
.++.|.++.-..=...|...+.. -.|..+.+.... +.+.|.|.+.+....+|..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~----~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE----AVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE----EEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC----CEEEEEECCHHHHHHHHHH
Confidence 47889999876667888888888 788888775544 5688888856666677764
No 420
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=23.58 E-value=64 Score=25.48 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=37.1
Q ss_pred eEEEecCCCCCCHHHHHHHHhc-cc-ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 011574 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (482)
Q Consensus 284 ~l~v~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~ 340 (482)
+.++-.+....+..+|++.++. |+ .|..|..+.-..+. --|||++..-.+|.....
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~-KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGK-KKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSS-EEEEEEECTTSCHHHHHG
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCc-eEEEEEcCCCCcHHHHHH
Confidence 3555566678888888888876 55 56676554433322 359999987777766543
No 421
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=23.07 E-value=1.1e+02 Score=24.34 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=37.8
Q ss_pred eEEEecCCCCCCHHHHHHHHhc-cc-ceeEEEcCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 011574 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (482)
Q Consensus 284 ~l~v~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~~kg~afV~f~~~e~A~~A~~ 340 (482)
+.|+-.+....+..+|++.++. |+ .|..|....-..+ .--|||++..-.+|.....
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~-~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDG-EKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSS-CEEEEEEECTTSCHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCC-ceEEEEEECCCCcHHHHHH
Confidence 3556667778999999988876 56 6667755444332 2359999987666655444
No 422
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=22.19 E-value=56 Score=33.20 Aligned_cols=45 Identities=9% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHH----hcccceeEEEcCCCCCCC-CcEEEEEeCCHHHHHHHHHHc
Q 011574 298 KIKELF----QRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342 (482)
Q Consensus 298 ~l~~~F----~~~G~v~~v~i~~~~~~~-kg~afV~f~~~e~A~~A~~~l 342 (482)
+|..+| ..+|.|+.+.|...+.-. +.+++|.|.+.++|..|+..+
T Consensus 359 DL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 359 DIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Done!