Query 011575
Match_columns 482
No_of_seqs 270 out of 2169
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 02:53:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2195 Transferrin receptor a 100.0 1.9E-67 4E-72 569.4 33.8 416 59-480 46-499 (702)
2 cd02121 PA_GCPII_like PA_GCPII 100.0 1.2E-37 2.6E-42 296.0 18.3 185 123-314 4-209 (220)
3 cd02128 PA_TfR PA_TfR: Proteas 100.0 3E-37 6.4E-42 284.2 17.1 160 155-321 19-182 (183)
4 cd02131 PA_hNAALADL2_like PA_h 100.0 7.9E-37 1.7E-41 269.9 12.9 131 152-292 2-138 (153)
5 COG4882 Predicted aminopeptida 99.9 2.8E-22 6.1E-27 197.0 20.7 303 74-477 5-319 (486)
6 PF04389 Peptidase_M28: Peptid 99.9 1.5E-23 3.3E-28 195.0 8.2 128 346-477 1-150 (179)
7 PRK10199 alkaline phosphatase 99.8 1.4E-20 2.9E-25 190.3 13.4 141 330-477 96-273 (346)
8 COG2234 Iap Predicted aminopep 99.7 3.8E-16 8.3E-21 165.1 13.7 142 331-478 195-350 (435)
9 cd04819 PA_2 PA_2: Protease-as 99.6 6.9E-15 1.5E-19 129.7 11.4 104 156-293 14-119 (127)
10 KOG2194 Aminopeptidases of the 99.6 4.9E-15 1.1E-19 161.8 9.1 141 329-475 126-283 (834)
11 cd04820 PA_M28_1_1 PA_M28_1_1: 99.4 9.2E-13 2E-17 116.7 7.8 78 151-228 8-97 (137)
12 cd04816 PA_SaNapH_like PA_SaNa 99.3 5.7E-12 1.2E-16 110.3 10.2 108 155-293 7-114 (122)
13 cd02130 PA_ScAPY_like PA_ScAPY 99.3 2E-11 4.4E-16 106.8 10.5 100 156-293 13-114 (122)
14 cd04822 PA_M28_1_3 PA_M28_1_3: 99.2 1.4E-11 3.1E-16 111.0 7.6 72 157-228 12-101 (151)
15 cd04817 PA_VapT_like PA_VapT_l 99.2 4.6E-11 1E-15 106.3 10.4 102 156-292 27-132 (139)
16 cd02133 PA_C5a_like PA_C5a_lik 99.2 1E-10 2.2E-15 105.3 9.5 94 160-293 21-114 (143)
17 KOG2526 Predicted aminopeptida 99.2 1.1E-10 2.5E-15 118.0 9.7 114 327-440 189-316 (555)
18 PF02225 PA: PA domain; Inter 99.1 2E-10 4.3E-15 96.4 8.9 100 160-291 1-101 (101)
19 cd04814 PA_M28_1 PA_M28_1: Pro 99.1 1.4E-10 3.1E-15 103.4 7.0 66 157-227 12-100 (142)
20 cd04815 PA_M28_2 PA_M28_2: Pro 99.0 3E-09 6.4E-14 94.7 11.0 106 156-293 8-126 (134)
21 PF05450 Nicastrin: Nicastrin; 99.0 2.4E-09 5.1E-14 103.9 11.1 95 346-440 1-115 (234)
22 cd00538 PA PA: Protease-associ 99.0 4.4E-09 9.5E-14 91.8 10.2 97 160-292 21-117 (126)
23 cd04821 PA_M28_1_2 PA_M28_1_2: 98.9 6.6E-09 1.4E-13 94.5 9.5 107 164-292 21-152 (157)
24 TIGR03176 AllC allantoate amid 98.8 1.1E-08 2.4E-13 107.5 9.6 80 330-412 54-139 (406)
25 cd02129 PA_hSPPL_like PA_hSPPL 98.8 2.4E-08 5.2E-13 86.7 8.1 79 177-292 35-113 (120)
26 PF09940 DUF2172: Domain of un 98.7 8.9E-08 1.9E-12 96.9 11.5 149 318-478 104-263 (386)
27 cd02126 PA_EDEM3_like PA_EDEM3 98.7 6.4E-08 1.4E-12 85.2 8.5 100 164-293 16-118 (126)
28 TIGR01879 hydantase amidase, h 98.7 7.3E-08 1.6E-12 101.1 9.5 78 332-412 54-137 (401)
29 cd02132 PA_GO-like PA_GO-like: 98.6 2.2E-07 4.8E-12 83.2 10.4 95 162-293 35-131 (139)
30 PRK13799 unknown domain/N-carb 98.6 1.1E-07 2.5E-12 104.4 9.3 79 330-411 236-320 (591)
31 cd02123 PA_C_RZF_like PA_C-RZF 98.6 3.3E-07 7.2E-12 83.4 9.8 100 162-293 37-139 (153)
32 PRK13590 putative bifunctional 98.6 1.8E-07 3.9E-12 103.0 9.4 78 330-410 236-319 (591)
33 cd02127 PA_hPAP21_like PA_hPAP 98.5 5.4E-07 1.2E-11 78.4 8.5 78 188-293 31-108 (118)
34 cd02122 PA_GRAIL_like PA _GRAI 98.4 2.1E-06 4.6E-11 76.7 11.2 98 160-292 26-129 (138)
35 cd02125 PA_VSR PA_VSR: Proteas 98.4 1.8E-06 3.9E-11 76.1 9.7 105 163-293 9-119 (127)
36 PRK12890 allantoate amidohydro 98.4 1E-06 2.2E-11 92.9 9.5 79 332-413 61-145 (414)
37 cd04813 PA_1 PA_1: Protease-as 98.4 1.1E-06 2.4E-11 76.3 8.1 75 188-292 36-110 (117)
38 KOG3946 Glutaminyl cyclase [Po 98.4 1.9E-06 4.2E-11 83.6 10.2 127 271-416 62-203 (338)
39 PRK12891 allantoate amidohydro 98.3 1.6E-06 3.4E-11 91.5 9.2 76 332-410 63-144 (414)
40 PRK09133 hypothetical protein; 98.2 8.5E-06 1.8E-10 87.4 11.5 82 331-416 88-192 (472)
41 PRK12893 allantoate amidohydro 98.2 5.7E-06 1.2E-10 87.0 9.0 79 332-413 63-147 (412)
42 PRK09290 allantoate amidohydro 98.1 8.7E-06 1.9E-10 85.8 9.4 80 332-414 60-145 (413)
43 PRK12892 allantoate amidohydro 98.1 8.1E-06 1.8E-10 85.8 9.1 78 332-413 62-145 (412)
44 cd02120 PA_subtilisin_like PA_ 98.1 7.5E-06 1.6E-10 71.6 7.1 70 188-293 48-118 (126)
45 PRK07906 hypothetical protein; 98.1 1.2E-05 2.6E-10 85.0 10.0 82 331-415 51-155 (426)
46 cd04818 PA_subtilisin_1 PA_sub 98.1 1.2E-05 2.6E-10 69.7 7.9 92 165-292 17-109 (118)
47 cd02124 PA_PoS1_like PA_PoS1_l 98.0 1.7E-05 3.8E-10 70.0 8.1 37 189-226 53-89 (129)
48 PRK06133 glutamate carboxypept 98.0 2.1E-05 4.6E-10 82.8 10.1 80 331-415 87-185 (410)
49 TIGR01883 PepT-like peptidase 98.0 1.6E-05 3.5E-10 82.0 8.3 78 331-413 49-146 (361)
50 TIGR01910 DapE-ArgE acetylorni 98.0 2.1E-05 4.6E-10 81.6 9.0 79 332-414 52-153 (375)
51 PF01546 Peptidase_M20: Peptid 97.9 0.00012 2.5E-09 67.9 12.2 99 349-457 1-126 (189)
52 PRK08596 acetylornithine deace 97.9 4.1E-05 8.8E-10 80.9 9.8 80 332-414 63-166 (421)
53 PRK13983 diaminopimelate amino 97.9 8.2E-05 1.8E-09 77.6 10.7 80 331-414 63-166 (400)
54 KOG2275 Aminoacylase ACY1 and 97.8 0.00012 2.6E-09 75.2 11.0 79 331-412 74-176 (420)
55 PRK06837 acetylornithine deace 97.8 9.4E-05 2E-09 78.3 9.7 80 330-412 82-184 (427)
56 TIGR01893 aa-his-dipept aminoa 97.8 7.4E-05 1.6E-09 80.4 8.9 75 332-413 47-152 (477)
57 PRK09104 hypothetical protein; 97.8 0.00015 3.2E-09 77.7 11.1 82 331-415 68-177 (464)
58 PRK13381 peptidase T; Provisio 97.8 9.8E-05 2.1E-09 77.6 9.3 79 331-413 54-184 (404)
59 PRK13013 succinyl-diaminopimel 97.8 0.00015 3.2E-09 76.6 10.7 79 331-413 71-170 (427)
60 TIGR01892 AcOrn-deacetyl acety 97.8 0.00018 3.8E-09 74.2 11.0 78 331-415 46-145 (364)
61 PRK07907 hypothetical protein; 97.7 0.00022 4.7E-09 76.1 11.2 78 331-415 70-170 (449)
62 PRK08262 hypothetical protein; 97.7 0.00019 4E-09 77.4 10.3 79 332-413 98-201 (486)
63 PRK07473 carboxypeptidase; Pro 97.7 0.00019 4.2E-09 74.7 10.1 81 332-415 62-161 (376)
64 PRK08588 succinyl-diaminopimel 97.7 0.00015 3.3E-09 75.2 9.1 78 331-414 48-148 (377)
65 TIGR01882 peptidase-T peptidas 97.6 0.00024 5.2E-09 74.9 9.9 78 331-412 57-187 (410)
66 PRK06915 acetylornithine deace 97.6 0.00021 4.6E-09 75.4 9.6 79 331-413 80-181 (422)
67 TIGR01880 Ac-peptdase-euk N-ac 97.6 0.0003 6.4E-09 73.7 9.7 80 331-413 57-160 (400)
68 PRK07338 hypothetical protein; 97.5 0.0003 6.5E-09 73.7 8.8 79 332-415 81-178 (402)
69 PRK07522 acetylornithine deace 97.5 0.00046 9.9E-09 71.8 10.0 77 331-414 52-150 (385)
70 PRK05469 peptidase T; Provisio 97.5 0.00041 9E-09 72.9 9.6 79 331-413 55-186 (408)
71 PRK08201 hypothetical protein; 97.5 0.00071 1.5E-08 72.2 11.5 81 331-415 66-169 (456)
72 PRK06446 hypothetical protein; 97.4 0.00072 1.6E-08 71.9 10.6 79 331-415 50-151 (436)
73 PRK07079 hypothetical protein; 97.4 0.00094 2E-08 71.6 11.5 82 331-415 72-177 (469)
74 PRK13009 succinyl-diaminopimel 97.4 0.00072 1.6E-08 70.0 9.9 78 331-414 47-148 (375)
75 PRK08652 acetylornithine deace 97.4 0.001 2.2E-08 68.1 10.3 73 331-414 47-133 (347)
76 COG0624 ArgE Acetylornithine d 97.4 0.001 2.2E-08 69.9 10.3 83 330-416 61-166 (409)
77 TIGR01886 dipeptidase dipeptid 97.3 0.00078 1.7E-08 72.3 9.4 79 333-415 67-166 (466)
78 PRK07318 dipeptidase PepV; Rev 97.3 0.00073 1.6E-08 72.5 8.6 78 333-414 68-166 (466)
79 PRK08554 peptidase; Reviewed 97.3 0.0015 3.3E-08 69.5 10.6 90 332-430 53-164 (438)
80 PRK13007 succinyl-diaminopimel 97.3 0.0013 2.9E-08 67.4 9.8 75 332-415 50-142 (352)
81 PRK04443 acetyl-lysine deacety 97.2 0.00097 2.1E-08 68.6 8.5 74 332-414 49-136 (348)
82 PRK05111 acetylornithine deace 97.2 0.001 2.2E-08 69.1 8.7 75 332-414 61-157 (383)
83 PRK13004 peptidase; Reviewed 97.2 0.0014 3.1E-08 68.6 9.5 76 332-413 59-158 (399)
84 COG4310 Uncharacterized protei 97.2 0.0015 3.2E-08 64.7 8.6 130 338-481 173-314 (435)
85 PRK06156 hypothetical protein; 97.1 0.0031 6.7E-08 68.7 11.0 75 336-415 102-203 (520)
86 PRK07205 hypothetical protein; 97.1 0.0023 4.9E-08 68.2 9.8 75 333-413 66-163 (444)
87 PRK08651 succinyl-diaminopimel 97.1 0.0017 3.7E-08 67.7 8.5 76 331-415 63-160 (394)
88 PF05343 Peptidase_M42: M42 gl 97.0 0.0031 6.8E-08 63.5 9.3 102 361-473 132-258 (292)
89 TIGR01900 dapE-gram_pos succin 97.0 0.0038 8.2E-08 65.0 10.1 80 333-415 42-156 (373)
90 TIGR01887 dipeptidaselike dipe 97.0 0.0036 7.8E-08 66.9 10.1 66 345-413 67-153 (447)
91 TIGR01902 dapE-lys-deAc N-acet 96.9 0.0045 9.8E-08 63.2 9.6 74 332-415 40-127 (336)
92 TIGR01246 dapE_proteo succinyl 96.8 0.0083 1.8E-07 62.1 10.7 76 332-413 45-144 (370)
93 TIGR03107 glu_aminopep glutamy 96.6 0.0072 1.6E-07 62.4 8.5 106 361-477 176-305 (350)
94 PRK15026 aminoacyl-histidine d 96.6 0.011 2.3E-07 63.9 10.0 89 331-431 52-171 (485)
95 TIGR01891 amidohydrolases amid 96.6 0.012 2.6E-07 60.9 10.0 79 331-414 43-137 (363)
96 PRK00466 acetyl-lysine deacety 96.6 0.0049 1.1E-07 63.3 6.9 61 347-414 62-136 (346)
97 PRK09961 exoaminopeptidase; Pr 96.4 0.01 2.2E-07 61.2 8.2 107 360-477 163-297 (344)
98 PLN02693 IAA-amino acid hydrol 96.4 0.015 3.2E-07 62.0 9.3 78 331-414 90-183 (437)
99 KOG2442 Uncharacterized conser 96.1 0.011 2.4E-07 61.8 6.5 95 166-292 72-166 (541)
100 TIGR03526 selenium_YgeY putati 96.1 0.025 5.5E-07 59.2 9.1 76 332-413 57-156 (395)
101 PRK10199 alkaline phosphatase 96.0 0.019 4E-07 59.0 7.6 46 70-115 32-79 (346)
102 PLN02280 IAA-amino acid hydrol 96.0 0.03 6.6E-07 60.3 9.5 77 331-414 140-233 (478)
103 COG4187 RocB Arginine degradat 95.9 0.037 7.9E-07 57.6 8.7 99 329-432 63-208 (553)
104 TIGR03320 ygeY M20/DapE family 95.6 0.048 1E-06 57.0 8.8 76 332-413 57-156 (395)
105 PRK08737 acetylornithine deace 95.5 0.049 1.1E-06 56.6 8.4 69 331-414 54-144 (364)
106 COG1363 FrvX Cellulase M and r 95.4 0.038 8.3E-07 56.9 7.0 106 361-477 178-310 (355)
107 PRK09864 putative peptidase; P 95.3 0.063 1.4E-06 55.5 8.1 104 361-477 173-305 (356)
108 PF04114 Gaa1: Gaa1-like, GPI 94.7 0.18 3.9E-06 54.6 10.0 96 330-434 2-110 (504)
109 KOG2657 Transmembrane glycopro 94.5 0.07 1.5E-06 56.5 6.1 96 329-427 155-262 (596)
110 TIGR03106 trio_M42_hydro hydro 94.0 0.19 4.1E-06 51.8 8.0 106 361-477 181-307 (343)
111 KOG2276 Metalloexopeptidases [ 93.6 0.27 5.8E-06 51.0 8.1 78 337-417 83-183 (473)
112 KOG4628 Predicted E3 ubiquitin 92.8 0.22 4.8E-06 50.9 6.1 73 187-291 75-147 (348)
113 KOG3920 Uncharacterized conser 89.3 0.39 8.4E-06 43.3 3.4 36 187-223 83-118 (193)
114 COG1473 AbgB Metal-dependent a 88.9 2.1 4.6E-05 45.0 9.1 78 332-414 57-150 (392)
115 PRK02256 putative aminopeptida 83.2 1.4 3E-05 47.3 4.4 55 348-409 245-299 (462)
116 KOG3946 Glutaminyl cyclase [Po 82.4 6.6 0.00014 39.1 8.2 55 60-115 42-96 (338)
117 KOG3566 Glycosylphosphatidylin 81.8 4.8 0.00011 43.7 7.7 80 327-416 116-196 (617)
118 PRK12893 allantoate amidohydro 81.0 2.6 5.7E-05 44.2 5.5 45 67-111 8-60 (412)
119 KOG2194 Aminopeptidases of the 77.7 6.6 0.00014 44.7 7.4 42 64-105 52-95 (834)
120 PRK12890 allantoate amidohydro 75.0 5.9 0.00013 41.6 6.0 44 68-111 8-58 (414)
121 PRK09290 allantoate amidohydro 74.7 5.4 0.00012 41.9 5.7 46 66-111 4-57 (413)
122 PRK12891 allantoate amidohydro 74.2 5.6 0.00012 41.9 5.6 44 69-112 10-61 (414)
123 PRK15026 aminoacyl-histidine d 71.0 8.8 0.00019 41.6 6.3 47 65-113 6-52 (485)
124 PTZ00371 aspartyl aminopeptida 68.4 12 0.00026 40.3 6.5 48 360-409 248-295 (465)
125 TIGR03176 AllC allantoate amid 67.4 7.2 0.00016 41.1 4.6 44 70-113 4-55 (406)
126 PLN02693 IAA-amino acid hydrol 64.8 27 0.00057 37.3 8.3 52 56-109 30-85 (437)
127 PRK13799 unknown domain/N-carb 62.0 10 0.00023 42.0 4.8 52 69-120 181-245 (591)
128 PRK06133 glutamate carboxypept 61.4 38 0.00082 35.5 8.7 44 69-112 37-81 (410)
129 TIGR01879 hydantase amidase, h 61.4 11 0.00024 39.4 4.7 42 71-112 3-52 (401)
130 PRK06915 acetylornithine deace 58.6 20 0.00043 37.7 6.0 53 57-111 3-57 (422)
131 PRK12892 allantoate amidohydro 54.5 25 0.00053 36.8 5.9 45 67-111 8-59 (412)
132 TIGR01893 aa-his-dipept aminoa 51.8 25 0.00054 37.8 5.4 43 68-112 3-45 (477)
133 PRK13590 putative bifunctional 51.5 24 0.00053 39.1 5.5 46 68-113 180-237 (591)
134 PRK08652 acetylornithine deace 50.0 31 0.00067 34.9 5.6 42 69-112 2-43 (347)
135 PRK02813 putative aminopeptida 45.3 25 0.00054 37.5 4.2 42 359-408 230-274 (428)
136 PRK05111 acetylornithine deace 45.3 41 0.00089 34.6 5.7 45 68-112 4-53 (383)
137 PRK08596 acetylornithine deace 44.0 46 0.001 35.0 6.0 44 69-112 13-57 (421)
138 PRK07338 hypothetical protein; 43.5 53 0.0011 34.2 6.3 43 69-111 17-60 (402)
139 PRK09133 hypothetical protein; 38.9 54 0.0012 35.1 5.6 41 69-109 37-77 (472)
140 TIGR03106 trio_M42_hydro hydro 37.7 61 0.0013 33.5 5.5 44 69-114 3-46 (343)
141 TIGR01883 PepT-like peptidase 37.0 51 0.0011 33.6 4.9 40 71-112 2-41 (361)
142 PRK13983 diaminopimelate amino 36.4 66 0.0014 33.2 5.7 42 70-111 6-51 (400)
143 TIGR01910 DapE-ArgE acetylorni 36.4 52 0.0011 33.9 4.8 39 74-112 3-42 (375)
144 TIGR01880 Ac-peptdase-euk N-ac 35.7 73 0.0016 33.1 5.9 42 69-110 9-50 (400)
145 PRK08588 succinyl-diaminopimel 35.6 71 0.0015 32.8 5.7 41 70-112 3-43 (377)
146 PRK08651 succinyl-diaminopimel 34.8 74 0.0016 32.9 5.7 45 69-113 6-51 (394)
147 PRK04443 acetyl-lysine deacety 34.1 77 0.0017 32.3 5.6 42 69-112 6-47 (348)
148 TIGR01935 NOT-MenG RraA famliy 32.7 1.4E+02 0.003 27.1 6.3 71 154-225 17-91 (150)
149 PF02662 FlpD: Methyl-viologen 32.6 2.4E+02 0.0052 24.5 7.7 58 169-227 3-63 (124)
150 cd01356 AcnX_swivel Putative A 32.4 1.1E+02 0.0023 26.9 5.3 52 166-226 27-80 (123)
151 TIGR01891 amidohydrolases amid 32.3 57 0.0012 33.5 4.3 36 73-110 3-38 (363)
152 PRK05469 peptidase T; Provisio 31.8 85 0.0018 32.8 5.6 44 71-114 4-56 (408)
153 PRK07522 acetylornithine deace 31.8 85 0.0018 32.3 5.5 40 70-110 5-44 (385)
154 PRK06837 acetylornithine deace 31.6 96 0.0021 32.7 6.0 40 69-110 20-59 (427)
155 TIGR01882 peptidase-T peptidas 30.9 69 0.0015 33.6 4.8 39 83-121 25-66 (410)
156 TIGR02998 RraA_entero regulato 30.7 2.1E+02 0.0046 26.2 7.2 72 154-226 21-96 (161)
157 PRK00466 acetyl-lysine deacety 28.9 1E+02 0.0022 31.4 5.4 42 69-112 10-51 (346)
158 COG2195 PepD Di- and tripeptid 28.7 44 0.00095 35.5 2.7 42 66-109 2-43 (414)
159 KOG0538 Glycolate oxidase [Ene 28.0 67 0.0014 32.6 3.6 42 180-222 265-306 (363)
160 PRK13013 succinyl-diaminopimel 27.1 1.2E+02 0.0025 31.8 5.7 43 69-111 14-57 (427)
161 PF12459 DUF3687: D-Ala-teicho 26.2 1.1E+02 0.0024 21.6 3.4 26 18-43 10-35 (42)
162 PRK13007 succinyl-diaminopimel 25.5 1.2E+02 0.0025 30.8 5.2 40 69-110 7-47 (352)
163 PRK07473 carboxypeptidase; Pro 25.2 1.6E+02 0.0034 30.5 6.2 44 68-111 10-54 (376)
164 PRK09372 ribonuclease activity 24.2 2.7E+02 0.0058 25.4 6.7 68 156-224 23-94 (159)
165 TIGR03107 glu_aminopep glutamy 23.7 1E+02 0.0022 31.9 4.3 39 74-114 3-41 (350)
166 PLN02280 IAA-amino acid hydrol 23.7 1.4E+02 0.003 32.3 5.5 39 70-110 98-136 (478)
167 PRK06446 hypothetical protein; 23.6 1.6E+02 0.0035 31.1 6.0 43 70-112 3-46 (436)
168 TIGR02708 L_lactate_ox L-lacta 22.6 1.9E+02 0.0041 30.2 6.0 33 190-223 280-312 (367)
169 PF12000 Glyco_trans_4_3: Gkyc 22.3 4.4E+02 0.0096 24.3 7.8 56 363-428 42-97 (171)
170 PRK07906 hypothetical protein; 22.2 1.1E+02 0.0025 32.0 4.4 26 87-112 21-46 (426)
171 PRK13004 peptidase; Reviewed 21.3 1.7E+02 0.0037 30.4 5.5 38 69-108 15-52 (399)
172 PRK07205 hypothetical protein; 21.1 1.5E+02 0.0033 31.3 5.2 45 67-111 9-61 (444)
173 PF01884 PcrB: PcrB family; I 21.1 1.2E+02 0.0025 29.6 3.8 55 166-222 153-210 (230)
174 TIGR01246 dapE_proteo succinyl 21.0 1.6E+02 0.0035 30.1 5.2 37 73-111 3-39 (370)
175 PRK13009 succinyl-diaminopimel 20.3 1.8E+02 0.0039 29.7 5.4 39 71-111 4-42 (375)
176 TIGR01892 AcOrn-deacetyl acety 20.3 1.4E+02 0.003 30.3 4.5 37 75-112 3-39 (364)
177 COG1363 FrvX Cellulase M and r 20.1 1.8E+02 0.0038 30.3 5.2 43 70-114 3-45 (355)
No 1
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.9e-67 Score=569.41 Aligned_cols=416 Identities=42% Similarity=0.675 Sum_probs=358.5
Q ss_pred HHHHHcccChHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCee-eeeeeEEEEeeecc---ceEEEEcCCCce
Q 011575 59 QKTFLSLSSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNT-HTVEYKALLSYPVH---ASVSAHFSNGTT 134 (482)
Q Consensus 59 ~~~~l~~~~~~~i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~-~~~~y~v~~~~p~~---~~l~i~~~~g~~ 134 (482)
...++.+...+++..+++.++..+|.+||..+.+++.++.++|.+.|++. +.-.|.+.++||.. ....+..+++.+
T Consensus 46 ~~l~~~~~~~~ni~~~l~~~~~~~~~a~t~~~~~~a~~i~~~~~~~g~~s~~~~~y~v~l~~p~~~~~~~~~~~~e~~~~ 125 (702)
T KOG2195|consen 46 LELAQGELYASNISKNLNAFTLRPHLAGTEQDLRAAEIILSQYLEAGLRSSSLLAYDVLLSYPEYENPSSVLIKLEKDLE 125 (702)
T ss_pred HHHhhhhccccchhhccchhhhhhhhhcchhhHHHHHHHHHHhhhhccccccccceeehhccccccCCccceecccccce
Confidence 44555566677799999999999999999999999999999999999974 89999999999963 233444455555
Q ss_pred E-EEEecccccccc-ccccccccccccCCCCCcceeEEEEcCCChhhHHHHHHcCCcccCcEEEEEeCCcccchhHHHHH
Q 011575 135 V-ELSLTEKGISQN-AILDVVQPYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLA 212 (482)
Q Consensus 135 ~-~~~l~e~~~~~~-~~~~~~~~~~ays~~G~v~g~lVyvn~G~~eD~~~L~~~gv~v~GkIvlvr~g~~~~~~~kv~~A 212 (482)
+ .....+....+| ...+.+++|.+||+.|+++|++||+|||+.+||..|+.++++++|||+|+|+|.++ +++|+++|
T Consensus 126 i~~s~~~~~~~~Gd~~~~~~~~~~~~~s~~g~~~~~~Vy~N~~~~~d~~~l~~~~i~~~g~i~l~r~~~i~-~g~~~~na 204 (702)
T KOG2195|consen 126 IFSSMPHELQVDGDEALPDIVEPFRAYSPSGSVTGELVYANYGRIEDFYKLEDLGINLSGKIVLARVGKIY-RGKKVKNA 204 (702)
T ss_pred eeccchhcccCCCcccCccccCchhccCcCCCccceEEEEecCchhhhhHhhcCcccccCceEEEEccccc-hhhhHhhH
Confidence 5 444455555555 33567889999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHcCCeEEEEEecCCccCC----------------Ccceecceec--cCCCCCCCCCCCCCCCccccccccccccCCCCC
Q 011575 213 EAKGAIGVLLYAEWDRLRG----------------GGVERGTVMR--GVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKI 274 (482)
Q Consensus 213 ~~~GA~gvIi~~dp~d~~~----------------~~v~rg~v~~--~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~p~I 274 (482)
+.+||.|||+|+||.++.. ..+++|+|.. +.|||.||+||+.....+... +....+.+|+|
T Consensus 205 ~~~~a~gviiy~d~~d~~~~~~~~~~p~~~~~~p~~~v~~g~v~~~~~~gdp~tpg~pa~~~~~~~~~-~~~~~~~~P~I 283 (702)
T KOG2195|consen 205 EAAGADGVIIYTDPYDYGSDEVLEVYPKGIWFMPEPGVERGKVYNSNGVGDPLTPGYPAVDIYSRHSP-DAKFSGGLPKI 283 (702)
T ss_pred HHhhcCcEEEeeccccccccccccccCcccccCCccceecceecccCCCCCCCCCCccCccccccCCh-hhhhcCCCCCC
Confidence 9999999999999977643 2478999984 899999999999987777664 22334568999
Q ss_pred ceeecCHHHHHHHHHhcCCCCccccccccCccCCCccCCCceE-EE-EEEeeeeeeeeEeEEEEEEcCCCCCCcEEEEee
Q 011575 275 PSLPLSFENAQIILGSLWGGFVTQFLNDLGRVNGGRVGPGPTM-VN-LTFQGKKKVATIHNVFAVIRGLEEPNRYVLLGN 352 (482)
Q Consensus 275 P~~~Is~~~a~~Ll~~l~g~~~~~~w~~~~~~~~~~~g~~~~~-v~-l~~~~~~~~~~~~Nvig~i~G~~~~d~~Viiga 352 (482)
|++||++++|+.|++.++|...++ | ..+..|++||++.. .. +.+....+.++++||||+|+|+.+||++|||||
T Consensus 284 p~~Pis~~~ae~l~~~~~g~~~~~-~---~~~~~~~~gpg~~~~~~~~~~~~~~~~~ki~NIig~I~Gs~epD~~Viiga 359 (702)
T KOG2195|consen 284 PSLPISAEDAEILLRLLGGGVKPD-G---LLGVSYRVGPGSTGDKDLVVVQNTREETKIQNIIGKIEGSEEPDRYVIIGA 359 (702)
T ss_pred CCcCccchhHHHHHHHhCCCcccc-c---ccCccccccccccccccceeccceeeeeeeeeEEEEEecCcCCCeEEEEec
Confidence 999999999999999998877665 2 22378899988641 11 222256778999999999999999999999999
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEecccc
Q 011575 353 HRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAV 432 (482)
Q Consensus 353 H~Ds~~~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~ 432 (482)
|+|||.+||.|+++|+|+|+|++|.|..+++.||||+|||+||+|+|||+|++||++|+|++...|+.++++|||+|+++
T Consensus 360 hrDSw~~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeEfGliGStE~~E~~~~~L~~~av~yin~d~~~ 439 (702)
T KOG2195|consen 360 HRDSWTFGAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAEEFGLLGSTEWAEEYLKNLKSRAVVYINVDNAV 439 (702)
T ss_pred cccccccCCcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccchhccccccHHHHHHHHHHhhheeEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CccccccCHhHHHHHHHHHhhCCCCCC----------CCccccccccc-cCcCCCCC
Q 011575 433 QG-PGFFAGATPQLDDILIEVTKMVKDPES----------ESGTLYDQWSA-PNRIFNGL 480 (482)
Q Consensus 433 ~g-~~~~~~~sP~l~~~~~~~~~~v~~p~~----------~~~s~~~~~~~-~~~p~~~~ 480 (482)
.| .+|.+.++|.|.++++++++.+.+|.. .+.|+|.+|.. .|+|+..+
T Consensus 440 ~~~~~l~~~~~PlL~~li~~~~k~~~~p~~~~~~~~v~~~g~~Sd~~~F~~~~GIpsv~~ 499 (702)
T KOG2195|consen 440 LGDYTLHVKTTPLLTDLIEEAAKSVLSPDKGDQSNRVLSLGGGSDYASFLQFAGIPSVDF 499 (702)
T ss_pred cCCceeEEecCccHHHHHHHHHhccCCCCccccceeEeccCCCCcchhhccccCcceeee
Confidence 99 999999999999999999999887754 35699999999 79998643
No 2
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=100.00 E-value=1.2e-37 Score=296.03 Aligned_cols=185 Identities=38% Similarity=0.599 Sum_probs=155.6
Q ss_pred ceEEEEcCCCceEEEEecccccccc-ccccccccccccCCCCCcceeEEEEcCCChhhHHHHHHcCCcccCcEEEEEeCC
Q 011575 123 ASVSAHFSNGTTVELSLTEKGISQN-AILDVVQPYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGS 201 (482)
Q Consensus 123 ~~l~i~~~~g~~~~~~l~e~~~~~~-~~~~~~~~~~ays~~G~v~g~lVyvn~G~~eD~~~L~~~gv~v~GkIvlvr~g~ 201 (482)
.++.+..+++... ++.|+....+ .+.+.+++|++||++|.++|+|||||||+.+||+.|++.+++++|||||+|+|.
T Consensus 4 ~~~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~f~a~s~sg~v~g~lVyvnyG~~~D~~~L~~~gvdv~GKIvLvr~G~ 81 (220)
T cd02121 4 RSLILTKPDGATG--KLIEDTVLEEPPSPDVVPPFHAYSASGNVTAELVYANYGSPEDFEYLEDLGIDVKGKIVIARYGG 81 (220)
T ss_pred ccceeecCCCccc--cccccccccCCCCccccccceecCCCCCceEEEEEcCCCcHHHHHHHhhcCCCCCCeEEEEECCC
Confidence 3445555444321 3334433222 234568899999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHcCCeEEEEEecCCcc-----------------CCCcceeccee---ccCCCCCCCCCCCCCCCcccc
Q 011575 202 VLSRSGVIFLAEAKGAIGVLLYAEWDRL-----------------RGGGVERGTVM---RGVGDPLSPGWAGVEGGESLD 261 (482)
Q Consensus 202 ~~~~~~kv~~A~~~GA~gvIi~~dp~d~-----------------~~~~v~rg~v~---~~~Gdp~tP~~~s~~~~~r~~ 261 (482)
++ ++.|+++|+++||+|||+|+||.++ +.++||||+|+ +++|||+|||||+.++.+|+.
T Consensus 82 ~~-~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~~~yP~g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~ 160 (220)
T cd02121 82 IF-RGLKVKNAQLAGAVGVIIYSDPADDGYITGENGKTYPDGPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRD 160 (220)
T ss_pred cc-HHHHHHHHHHcCCEEEEEEeCchhcccccccccccCCCCCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccC
Confidence 98 8999999999999999999999765 22789999999 589999999999999988887
Q ss_pred ccccccccCCCCCceeecCHHHHHHHHHhcCCCCccccccccCccCCCccCCC
Q 011575 262 LEDSEVSKRFPKIPSLPLSFENAQIILGSLWGGFVTQFLNDLGRVNGGRVGPG 314 (482)
Q Consensus 262 ~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g~~~~~~w~~~~~~~~~~~g~~ 314 (482)
..+ ...+|+||++|||+++|++||+.|+|..+|..|+++++ ..|++||+
T Consensus 161 ~~~---~~~lP~IPs~PIS~~da~~lL~~L~g~~~p~~W~g~l~-~~y~~g~~ 209 (220)
T cd02121 161 KEE---SKGLPKIPSLPISYRDAQPLLKALGGPGAPSDWQGGLP-VTYRLGFG 209 (220)
T ss_pred ccc---ccCCCCCCcccCCHHHHHHHHHHcCCCCCCccccCCCC-CceeeCCC
Confidence 533 24689999999999999999999999999999999986 78888765
No 3
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=100.00 E-value=3e-37 Score=284.21 Aligned_cols=160 Identities=32% Similarity=0.512 Sum_probs=143.1
Q ss_pred cccccCCCCCcceeEEEEcCCChhhHHHHHHcCCcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEEecCCccCC---
Q 011575 155 PYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRG--- 231 (482)
Q Consensus 155 ~~~ays~~G~v~g~lVyvn~G~~eD~~~L~~~gv~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~~dp~d~~~--- 231 (482)
+|++||++|+|+|++||||||+.+||++|++.+++++|||||+|||.++ +++|+++|+++||+|||||+||.|+..
T Consensus 19 ~f~~~s~~G~v~g~lVyvn~G~~~Df~~L~~~gv~v~GkIvLvr~G~~~-~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~ 97 (183)
T cd02128 19 GYVAYSAAGTVTGKLVYANYGRKKDFEDLQSVGVSVNGSVVLVRAGKIS-FAEKVANAEKLGAVGVLIYPDPADFPIDPS 97 (183)
T ss_pred cccCCCCCCceEEEEEEcCCCCHHHHHHHHhcCCCCCCeEEEEECCCCC-HHHHHHHHHHCCCEEEEEecCHHHcCcccC
Confidence 5899999999999999999999999999999999999999999999998 999999999999999999999976543
Q ss_pred CcceecceeccCCCCCCCCCCCCCCCccccccccccccCCCCCceeecCHHHHHHHHHhcCCCCccccccccCccCCCcc
Q 011575 232 GGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWGGFVTQFLNDLGRVNGGRV 311 (482)
Q Consensus 232 ~~v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g~~~~~~w~~~~~~~~~~~ 311 (482)
+++|||++++++|||+||+||+.++. ++...+ ...+|+||++|||+++|++||+.|+|..+|..|+++ ...|++
T Consensus 98 ~~~~~g~~~~~~GDplTPG~ps~~~~-~~~~~~---~~~lP~IPs~PIS~~da~~lL~~l~G~~~p~~w~g~--~~~y~~ 171 (183)
T cd02128 98 ETALFGHVHLGTGDPYTPGFPSFNHT-QFPPSQ---SSGLPNIPAQTISAAAAAKLLSKMGGPVCPSGWKGG--DSTCRL 171 (183)
T ss_pred cceeecceeccCCCcCCCCCcccccc-ccCccc---ccCCCCCCEeccCHHHHHHHHHHcCCCCCCccccCC--CcCEee
Confidence 46999999999999999999999865 344332 235899999999999999999999999999999998 479999
Q ss_pred CCCc-eEEEEE
Q 011575 312 GPGP-TMVNLT 321 (482)
Q Consensus 312 g~~~-~~v~l~ 321 (482)
||+. .+|+|+
T Consensus 172 Gp~~~~~v~~~ 182 (183)
T cd02128 172 GTSSSKNVKLT 182 (183)
T ss_pred CCCCCceEEEe
Confidence 9984 346665
No 4
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=100.00 E-value=7.9e-37 Score=269.89 Aligned_cols=131 Identities=27% Similarity=0.320 Sum_probs=116.8
Q ss_pred ccccccccCCCCCcceeEEEEcCCChhhHHHHHHcCCcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEEecCCccCC
Q 011575 152 VVQPYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRG 231 (482)
Q Consensus 152 ~~~~~~ays~~G~v~g~lVyvn~G~~eD~~~L~~~gv~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~~dp~d~~~ 231 (482)
++++|++||++|+|+|++||||||+.|||++|++ +++++|||||+|||+++ |+.|+++|+++||+|||||+||.|+..
T Consensus 2 ~~p~f~aYS~sG~Vtg~~VYvNyG~~eDf~~L~~-~V~v~GkIvi~RyG~~~-RG~Kv~~A~~~GA~GviIYsDP~d~~~ 79 (153)
T cd02131 2 LLYSYAAYSAKGTLQAEVVDVQYGSVEDLRRIRD-NMNVTNQIALLKLGQAP-LLYKLSLLEEAGFGGVLLYVDPCDLPK 79 (153)
T ss_pred CcCccceeCCCCceEEEEEEecCCCHHHHHHHHh-CCCccceEEEEeccCcc-hHHHHHHHHHCCCeEEEEecChhhccC
Confidence 5788999999999999999999999999999998 69999999999999999 999999999999999999999987642
Q ss_pred C-----cceecceecc-CCCCCCCCCCCCCCCccccccccccccCCCCCceeecCHHHHHHHHHhcC
Q 011575 232 G-----GVERGTVMRG-VGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (482)
Q Consensus 232 ~-----~v~rg~v~~~-~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 292 (482)
. ++|+ ++++ .|||+||||||+++++|++.. .+|+||++|||+++|++||+.-.
T Consensus 80 ~~~~~~~v~~--v~~~~~GDP~TPG~PS~~~~~R~~~~------~lP~IPs~PIS~~dA~~lL~~~~ 138 (153)
T cd02131 80 TRHTWHQAFM--VSLNPGGDPSTPGYPSADQSCRQCRG------NLTSLLVQPISAYLAKKLLSAPP 138 (153)
T ss_pred cCCCccceEE--EecCCCCCCCCCCCccccCcccCCcC------CCCCCcccccCHHHHHHHHhCCc
Confidence 0 3443 4555 499999999999999998632 58999999999999999998753
No 5
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=99.90 E-value=2.8e-22 Score=197.02 Aligned_cols=303 Identities=23% Similarity=0.224 Sum_probs=223.4
Q ss_pred HHHHhcc-CCCCCCChhhHHHHHHHHHHHHHCCCeeeeeeeEEEEeeeccceEEEEcCCCceEEEEeccccccccccccc
Q 011575 74 YLRDLTH-HPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEYKALLSYPVHASVSAHFSNGTTVELSLTEKGISQNAILDV 152 (482)
Q Consensus 74 ~L~~Ls~-~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~~y~v~~~~p~~~~l~i~~~~g~~~~~~l~e~~~~~~~~~~~ 152 (482)
.++.+.. +.-.+|++|+..++++|...+++.-...+..++.|+.|.-.+..+.+-+ + . .
T Consensus 5 y~k~~~ayg~li~g~~ger~~v~~vrafLe~~~v~~rL~p~~VlaWe~~e~~le~~~---~-----~------------i 64 (486)
T COG4882 5 YSKLKGAYGWLIVGAGGERGAVEVVRAFLEESLVSSRLHPFWVLAWELRESGLEPAA---S-----W------------I 64 (486)
T ss_pred HHHHhhhccceeecCCCchhHHHHHHHHHhccccceeeeeeeeehhhhHhhccCcch---h-----h------------h
Confidence 3333433 4568999999999999999999987677999999999887665444311 0 0 0
Q ss_pred cccccccCCCCCcceeEEEEcCCChhhHHHHHHcCCcccCcEEEEEeCCcccchh-HHHHHHHcCCeEEEEEecCCccCC
Q 011575 153 VQPYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSG-VIFLAEAKGAIGVLLYAEWDRLRG 231 (482)
Q Consensus 153 ~~~~~ays~~G~v~g~lVyvn~G~~eD~~~L~~~gv~v~GkIvlvr~g~~~~~~~-kv~~A~~~GA~gvIi~~dp~d~~~ 231 (482)
.....+||-+|+++|.+|..+ .|+.|+|++.+..+.....+ .+..|.++||.|+||-+++..
T Consensus 65 ~ai~~PYsls~~IEgr~v~~~--------------gD~~Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~r--- 127 (486)
T COG4882 65 SAIVGPYSLSGDIEGRPVVLE--------------GDAGGRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPR--- 127 (486)
T ss_pred hhcccccccccccccceeccc--------------CCCCCeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCce---
Confidence 112368999999999999653 38999999999776542222 366799999999999887632
Q ss_pred CcceecceeccCCCCCCCCCCCCCCCccccccccccccCCCCCceeecCHHHHHHHHHhcCCCCccccccccCccCCCcc
Q 011575 232 GGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWGGFVTQFLNDLGRVNGGRV 311 (482)
Q Consensus 232 ~~v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g~~~~~~w~~~~~~~~~~~ 311 (482)
..|. .|| |.+. .+ ...++||+..+.-.+...+-
T Consensus 128 -----riV~--~Gd-----~gy~-----~~-------s~PtPIPva~v~en~~~y~~----------------------- 160 (486)
T COG4882 128 -----RIVT--GGD-----WGYS-----VS-------SSPTPIPVAVVPENYSRYAE----------------------- 160 (486)
T ss_pred -----eEEe--ccc-----cccc-----CC-------CCCCCcceEEeccCcchhhc-----------------------
Confidence 1111 233 3221 11 14578999988755554442
Q ss_pred CCCceEEEEEEeeeeeeeeEeEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCc
Q 011575 312 GPGPTMVNLTFQGKKKVATIHNVFAVIRGLEEPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRT 391 (482)
Q Consensus 312 g~~~~~v~l~~~~~~~~~~~~Nvig~i~G~~~~d~~ViigaH~Ds~~~GA~D~~sG~a~llelar~l~~~~~~g~~p~rt 391 (482)
+..++++.++.......++|+|+.-.|. +.+|+|+||+|||..|+.||-.|++...++++.|.. -.-.
T Consensus 161 --~~~rvrl~vD~~~~~ty~y~~Ia~~~~e---n~vv~i~AH~DHW~~G~tDN~lg~~~AV~~~~~lr~-------~~~~ 228 (486)
T COG4882 161 --EAGRVRLWVDACVERTYDYNVIAVDGGE---NGVVLIGAHLDHWYTGFTDNILGVAQAVETAGRLRG-------RGLA 228 (486)
T ss_pred --cceeEEEEEecccceeEEEEEEEecCCC---CCceEEeechhhhhhcccchhhhHHHHHHHHHHHhh-------cCcc
Confidence 1235777776655667999999988665 579999999999999999999999999999888853 1245
Q ss_pred EEEEEeCCCcCCC---------ccHHHHHHHhhhcccccEEEEEEecccccCCccccccCHhHHHHHHHHHh-hCCCCCC
Q 011575 392 IIFCSWDAEEFGM---------IGSTEWVEENLVNLGAKAVAYLNVDCAVQGPGFFAGATPQLDDILIEVTK-MVKDPES 461 (482)
Q Consensus 392 I~f~~~~~eE~gl---------~GS~~~~~~~~~~~~~~~~a~inlD~~~~g~~~~~~~sP~l~~~~~~~~~-~v~~p~~ 461 (482)
+-.++|++||.|+ .||.+|++++... +.+.++||+|.++.+ .+.+.+.|.|..+..++.+ .|..|.+
T Consensus 229 ~~lv~FtAEE~g~p~~~sfyWa~GSr~~lk~~k~~--~~v~~~VN~Dv~g~~-~lv~~~~P~L~e~~~~~g~~~vespe~ 305 (486)
T COG4882 229 AGLVVFTAEEHGMPGMASFYWAAGSRGLLKESKAA--EEVEAYVNFDVAGYR-CLVASGAPQLVEHALEAGAVEVESPEP 305 (486)
T ss_pred eeEEEEeccccCCCCCcceeecccchHHHhhcCCc--hhhhheecccccccc-chhhhcChHHHHHHHHhCCceecCCCc
Confidence 7889999999886 6999999987753 578899999999986 7888899999999999876 4677776
Q ss_pred CCccccccccccCcCC
Q 011575 462 ESGTLYDQWSAPNRIF 477 (482)
Q Consensus 462 ~~~s~~~~~~~~~~p~ 477 (482)
. +|--++...|+|+
T Consensus 306 y--~Ds~~y~~aGiPS 319 (486)
T COG4882 306 Y--CDSIMYAWAGIPS 319 (486)
T ss_pred c--cchhhhhhcCCCe
Confidence 5 3434445556665
No 6
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.89 E-value=1.5e-23 Score=195.04 Aligned_cols=128 Identities=31% Similarity=0.472 Sum_probs=98.5
Q ss_pred cEEEEeecCCC--------CCCCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhc
Q 011575 346 RYVLLGNHRDA--------WTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVN 417 (482)
Q Consensus 346 ~~ViigaH~Ds--------~~~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~GS~~~~~~~~~~ 417 (482)
++|||+||+|| +.+||+||+||+|+|||+||.|+++ +.+|+|+|+|++|+|||.|+.||++|+++ ...
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~---~~~~~~~i~fv~~~~EE~gl~GS~~~~~~-~~~ 76 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKEL---KPQPKRTIRFVFFDGEEQGLLGSRAFVEH-DHE 76 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHS---THSSSEEEEEEEESSGGGTSHHHHHHHHH-HHC
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHh---hcccCccEEEEEecccccCccchHHHHHh-hhc
Confidence 58999999999 6689999999999999999999873 34789999999999999999999999994 555
Q ss_pred ccccEEEEEEecccccC-CccccccCHh----HHHHHHHHHhh----CC-----CCCCCCccccccccccCcCC
Q 011575 418 LGAKAVAYLNVDCAVQG-PGFFAGATPQ----LDDILIEVTKM----VK-----DPESESGTLYDQWSAPNRIF 477 (482)
Q Consensus 418 ~~~~~~a~inlD~~~~g-~~~~~~~sP~----l~~~~~~~~~~----v~-----~p~~~~~s~~~~~~~~~~p~ 477 (482)
+..++.++||+||++.+ ..+.....+. +.+.+.++.+. .. .......||+.+|...|+|+
T Consensus 77 ~~~~~~~~inlD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sD~~~F~~~gip~ 150 (179)
T PF04389_consen 77 ELDNIAAVINLDMIGSGDPTVYSEGSPSLPSRLEAYLSSFKQPYGSSLGPDVPPEKPTFGGSDHYPFSKAGIPA 150 (179)
T ss_dssp HHHHEEEEEEECSSBSSSSEEEEEEGGGHHHHHHHHHHHHHHHHHCHTSSECEEEESSTTSSTCHHHHTTT-EE
T ss_pred ccccceeEEeccccccCcccceeeeeccccchhhhhhhhhhhhhhcccccccccccCCCCCCCcHhhhcCCEeE
Confidence 66899999999999998 5565556653 44445444332 11 11234579999999999986
No 7
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.84 E-value=1.4e-20 Score=190.31 Aligned_cols=141 Identities=17% Similarity=0.264 Sum_probs=109.3
Q ss_pred eEeEEEEEEcCCCCCCcEEEEeecCCCCC----------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEE
Q 011575 330 TIHNVFAVIRGLEEPNRYVLLGNHRDAWT----------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTII 393 (482)
Q Consensus 330 ~~~Nvig~i~G~~~~d~~ViigaH~Ds~~----------------~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~ 393 (482)
...|||+.++|.. ++.|||+||+|++. +||+||++|+|+|||+||.|++. +++++|+
T Consensus 96 ~g~nVIa~~~G~~--~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~-----~~~~~I~ 168 (346)
T PRK10199 96 TGSTVIAAHEGKA--PQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNV-----PTEYGIR 168 (346)
T ss_pred ccceEEEEECCCC--CCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhC-----CCCCcEE
Confidence 4589999999963 57899999999974 49999999999999999999753 5789999
Q ss_pred EEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEecccccCCcccc-ccC--H-hHH----HHHHHHHhhC-----CCCC
Q 011575 394 FCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGPGFFA-GAT--P-QLD----DILIEVTKMV-----KDPE 460 (482)
Q Consensus 394 f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~~g~~~~~-~~s--P-~l~----~~~~~~~~~v-----~~p~ 460 (482)
|+++++||.|+.||..|+++......++++++||+||++.+..+.+ .+. + .+. +.+.+++++. .+|.
T Consensus 169 fv~~~~EE~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~d~~~~~~g~~~~~~~~~~~~d~~~~~a~~~g~~~~~~~~ 248 (346)
T PRK10199 169 FVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVNTPEAVRKLTRDRALAIARRHGIAATTNPG 248 (346)
T ss_pred EEEECCcccCcHHHHHHHHhcCccchhcEEEEEEeccCCCCCceEEecCCCcHHHHhHHHHHHHHHHHHHcCCccccCCC
Confidence 9999999999999999999866556679999999999987733332 222 2 222 2244555442 2232
Q ss_pred CC--------CccccccccccCcCC
Q 011575 461 SE--------SGTLYDQWSAPNRIF 477 (482)
Q Consensus 461 ~~--------~~s~~~~~~~~~~p~ 477 (482)
+. .+|||.+|.++|+|+
T Consensus 249 ~~~~~p~g~~~rSDH~~F~~~GIP~ 273 (346)
T PRK10199 249 LNKNYPKGTGCCNDAEVFDKAGIPV 273 (346)
T ss_pred ccccccCCCcCCcccHHHHhcCCCe
Confidence 22 369999999999997
No 8
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.67 E-value=3.8e-16 Score=165.13 Aligned_cols=142 Identities=26% Similarity=0.307 Sum_probs=107.9
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCC--CCCCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCccHH
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDA--WTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGST 408 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds--~~~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~GS~ 408 (482)
..++.+.+.. ...+..+++++|+|+ ..+||+||+||+|+|||+||.|+.. .|+|+|+|++|++||.|+.||.
T Consensus 195 ~~~~~~~~~~-~~~~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~-----~p~~~v~f~~~~aEE~Gl~GS~ 268 (435)
T COG2234 195 SQIIEAIIGT-AHSDSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGN-----PPKRTVRFVAFGAEESGLLGSE 268 (435)
T ss_pred cccceEEEec-cCCCceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcC-----CCCceEEEEEecchhhcccccH
Confidence 3444444433 346899999999999 4469999999999999999999865 5999999999999999999999
Q ss_pred HHHHHhhhcccccEEEEEEecccccC---Ccccccc------CHhHHHHHHHHHhhCC---CCCCCCccccccccccCcC
Q 011575 409 EWVEENLVNLGAKAVAYLNVDCAVQG---PGFFAGA------TPQLDDILIEVTKMVK---DPESESGTLYDQWSAPNRI 476 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~a~inlD~~~~g---~~~~~~~------sP~l~~~~~~~~~~v~---~p~~~~~s~~~~~~~~~~p 476 (482)
+|+.++...+.+++.++||+||++.. ..+...+ .|.+.+.+....+.+. ......+|+|.+|.++|+|
T Consensus 269 ~~~~~~~~~~~~~~~~viN~Dm~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sd~~~f~~~gi~ 348 (435)
T COG2234 269 AYVKRLSKDLDKKIALVINLDMLGSPNPTPTLILYGNGLERVPPGLRAVAALIGRPVDPSTVQDFDPRSDHYPFTEAGIP 348 (435)
T ss_pred HHHhcCCcchhhhhheEEecccccCCCCCcceEEeccCCccccchHHHHHHHHHhhccccccCCCCCCCcchhhhhcCCc
Confidence 99998887677788889999999985 2232221 2334444444443342 1334568999999999998
Q ss_pred CC
Q 011575 477 FN 478 (482)
Q Consensus 477 ~~ 478 (482)
..
T Consensus 349 ~~ 350 (435)
T COG2234 349 SL 350 (435)
T ss_pred ce
Confidence 74
No 9
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.60 E-value=6.9e-15 Score=129.67 Aligned_cols=104 Identities=21% Similarity=0.235 Sum_probs=82.4
Q ss_pred ccccCCCCCcceeEEEEcCCChhhHHHHHHcCCcccCcEEEEEeCCc--ccchhHHHHHHHcCCeEEEEEecCCccCCCc
Q 011575 156 YHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSV--LSRSGVIFLAEAKGAIGVLLYAEWDRLRGGG 233 (482)
Q Consensus 156 ~~ays~~G~v~g~lVyvn~G~~eD~~~L~~~gv~v~GkIvlvr~g~~--~~~~~kv~~A~~~GA~gvIi~~dp~d~~~~~ 233 (482)
.++||++++++|++||+++|+.+||+ +++++|||||++++.+ . +..|+++|+++||+|||+|++....
T Consensus 14 ~~~~s~~~~~~~~lV~~g~G~~~d~~-----~~~v~GkIvlv~~g~~~~~-~~~k~~~A~~~GA~avi~~~~~~g~---- 83 (127)
T cd04819 14 ALPRSPSGEAKGEPVDAGYGLPKDFD-----GLDLEGKIAVVKRDDPDVD-RKEKYAKAVAAGAAAFVVVNTVPGV---- 83 (127)
T ss_pred EcCCCCCCCeeEEEEEeCCCCHHHcC-----CCCCCCeEEEEEcCCCchh-HHHHHHHHHHCCCEEEEEEeCCCCc----
Confidence 36789999999999999999999997 7899999999999987 5 7899999999999999999754210
Q ss_pred ceecceeccCCCCCCCCCCCCCCCccccccccccccCCCCCceeecCHHHHHHHHHhcCC
Q 011575 234 VERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (482)
Q Consensus 234 v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g 293 (482)
+ +.++.|... ....+.||++.|+.+++++|++.++.
T Consensus 84 ~-----------~~~~~~~~~-------------~~~~~~IP~v~Is~edg~~L~~~l~~ 119 (127)
T cd04819 84 L-----------PATGDEGTE-------------DGPPSPIPAASVSGEDGLRLARVAER 119 (127)
T ss_pred C-----------ccccccccc-------------CCCCCCCCEEEEeHHHHHHHHHHHhc
Confidence 0 112221100 01246799999999999999999863
No 10
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.57 E-value=4.9e-15 Score=161.76 Aligned_cols=141 Identities=23% Similarity=0.293 Sum_probs=111.8
Q ss_pred eeEeEEEEEEcCCCCCCc-EEEEeecCCCCC--CCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCc
Q 011575 329 ATIHNVFAVIRGLEEPNR-YVLLGNHRDAWT--YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMI 405 (482)
Q Consensus 329 ~~~~Nvig~i~G~~~~d~-~ViigaH~Ds~~--~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~ 405 (482)
+.+.||+.+|.++..+++ +|++.||+||+. +||.|+|+|+|+|||++|.+.+..+ ..+++|+|.++++||.++.
T Consensus 126 ~~i~NIvVki~~k~~~~~~~lLlnaHfDSvpt~~gAtDDg~~va~mLe~lRv~s~~~~---~l~~~vVFLfNgaEE~~L~ 202 (834)
T KOG2194|consen 126 QNISNIVVKISPKNGNDKNALLLNAHFDSVPTGPGATDDGSGVASMLEALRVLSKSDK---LLTHSVVFLFNGAEESGLL 202 (834)
T ss_pred eeeeeEEEecCCCCCCccceeeeeccccccCCCCCCCcchhHHHHHHHHHHHhhcCCC---cccccEEEEecCcccchhh
Confidence 567899999988877676 999999999997 5999999999999999999986532 2389999999999999999
Q ss_pred cHHHHHHHhhhcccccEEEEEEecccccC-CccccccCHhHHHHHHHHHhhCCCCCC-------------CCcccccccc
Q 011575 406 GSTEWVEENLVNLGAKAVAYLNVDCAVQG-PGFFAGATPQLDDILIEVTKMVKDPES-------------ESGTLYDQWS 471 (482)
Q Consensus 406 GS~~~~~~~~~~~~~~~~a~inlD~~~~g-~~~~~~~sP~l~~~~~~~~~~v~~p~~-------------~~~s~~~~~~ 471 (482)
||..|+.+|+ +.+++.+.||||.+|+| ...-.++.|.= -+++...+.+++|-. ...|||+-|.
T Consensus 203 gsH~FItQH~--w~~~~ka~INLea~GsGGreiLFQagp~~-wl~k~Y~~~~phPf~stlgee~Fq~g~IpSdTDfrif~ 279 (834)
T KOG2194|consen 203 GSHAFITQHP--WSKNIKAVINLEAAGSGGREILFQAGPNH-WLLKAYLQAAPHPFASTLGEELFQSGIIPSDTDFRIFR 279 (834)
T ss_pred hcccceecCh--hhhhhheEEeccccCcccceeEEecCCch-HHHHHHHhhCCCchhhhhHHHhhhcCcCccccchHHHH
Confidence 9999999987 56899999999999998 55555666653 344444444555421 1357787776
Q ss_pred ccCc
Q 011575 472 APNR 475 (482)
Q Consensus 472 ~~~~ 475 (482)
+.|+
T Consensus 280 eyg~ 283 (834)
T KOG2194|consen 280 EYGH 283 (834)
T ss_pred HhCC
Confidence 6553
No 11
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=99.38 E-value=9.2e-13 Score=116.72 Aligned_cols=78 Identities=27% Similarity=0.340 Sum_probs=62.4
Q ss_pred cccccccccCCCCCcceeEEEEcCCChhhHHHHHH-cCCcccCcEEEEEeCCcc-----------cchhHHHHHHHcCCe
Q 011575 151 DVVQPYHAYSPSGSAYGKVVFVNYGREEDYRALEA-AGVNVSGCVVMARKGSVL-----------SRSGVIFLAEAKGAI 218 (482)
Q Consensus 151 ~~~~~~~ays~~G~v~g~lVyvn~G~~eD~~~L~~-~gv~v~GkIvlvr~g~~~-----------~~~~kv~~A~~~GA~ 218 (482)
+++..+++|+++|.++|+|||||||+.++...+.+ .++|++|||||++.|.+. .++.|+++|+++||+
T Consensus 8 d~~~~~~~~~~~g~v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~ 87 (137)
T cd04820 8 DLLIGASAAEPAASVEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAI 87 (137)
T ss_pred ceEeeccccCCCCCceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCe
Confidence 45566778899999999999999998543222222 289999999999988751 257899999999999
Q ss_pred EEEEEecCCc
Q 011575 219 GVLLYAEWDR 228 (482)
Q Consensus 219 gvIi~~dp~d 228 (482)
|||+|+||.+
T Consensus 88 aVIi~~d~~~ 97 (137)
T cd04820 88 GMITLTTPRS 97 (137)
T ss_pred EEEEEeCCcc
Confidence 9999999864
No 12
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.34 E-value=5.7e-12 Score=110.32 Aligned_cols=108 Identities=20% Similarity=0.265 Sum_probs=79.3
Q ss_pred cccccCCCCCcceeEEEEcCCChhhHHHHHHcCCcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEEecCCccCCCcc
Q 011575 155 PYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGV 234 (482)
Q Consensus 155 ~~~ays~~G~v~g~lVyvn~G~~eD~~~L~~~gv~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~~dp~d~~~~~v 234 (482)
+|.++++++.++|+|||++++..+.-+.+...+.+++|||||+++|.+. +.+|+.+|+++||+|||+|++.... .
T Consensus 7 ~~~~~~~~~gi~~~lv~~~~~~~~gC~~~~~~~~~~~GkIvLv~rg~c~-f~~K~~~A~~aGA~avIi~n~~~~~----~ 81 (122)
T cd04816 7 SYSPSTPPGGVTAPLVPLDPERPAGCDASDYDGLDVKGAIVLVDRGGCP-FADKQKVAAARGAVAVIVVNNSDGG----G 81 (122)
T ss_pred eccCCCCCCCcEEEEEEcCCCCccCCCccccCCCCcCCeEEEEECCCCC-HHHHHHHHHHCCCcEEEEEeCCCCc----c
Confidence 5788999999999999998764322221111256899999999999988 8999999999999999999876311 0
Q ss_pred eecceeccCCCCCCCCCCCCCCCccccccccccccCCCCCceeecCHHHHHHHHHhcCC
Q 011575 235 ERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (482)
Q Consensus 235 ~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g 293 (482)
.++|-. + + .....||++.|++++++.|++.++.
T Consensus 82 -------------~~~~~~-------~-~-----~~~~~iP~~~Is~~~G~~l~~~l~~ 114 (122)
T cd04816 82 -------------TAGTLG-------A-P-----NIDLKVPVGVITKAAGAALRRRLGA 114 (122)
T ss_pred -------------cccccc-------C-C-----CCCCeeeEEEEcHHHHHHHHHHHcC
Confidence 111100 0 0 0124699999999999999999853
No 13
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.29 E-value=2e-11 Score=106.81 Aligned_cols=100 Identities=27% Similarity=0.431 Sum_probs=77.8
Q ss_pred ccccCCCCCcceeEEEEc-CC-ChhhHHHHHHcCCcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEEecCCccCCCc
Q 011575 156 YHAYSPSGSAYGKVVFVN-YG-REEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGG 233 (482)
Q Consensus 156 ~~ays~~G~v~g~lVyvn-~G-~~eD~~~L~~~gv~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~~dp~d~~~~~ 233 (482)
.++|++.++++|+|||++ +| +++||. .+++|||||++.|.+. +.+|+++|+++||+|||+|++..+ +
T Consensus 13 ~~~~~~~~~~~g~lv~~~~~gC~~~~~~------~~~~gkIvlv~rg~c~-f~~K~~~A~~aGA~~vIv~n~~~~----~ 81 (122)
T cd02130 13 AFTYSPAGEVTGPLVVVPNLGCDAADYP------ASVAGNIALIERGECP-FGDKSALAGAAGAAAAIIYNNVPA----G 81 (122)
T ss_pred ecccCCCCCcEEEEEEeCCCCCCcccCC------cCCCCEEEEEECCCCC-HHHHHHHHHHCCCcEEEEEECCCC----c
Confidence 478999999999999996 45 466774 3799999999999998 899999999999999999986521 0
Q ss_pred ceecceeccCCCCCCCCCCCCCCCccccccccccccCCCCCceeecCHHHHHHHHHhcCC
Q 011575 234 VERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (482)
Q Consensus 234 v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g 293 (482)
. .++.++. .....||++.|+.++++.|++.++.
T Consensus 82 ~------------~~~~~~~---------------~~~~~Ip~v~Is~~~G~~L~~~l~~ 114 (122)
T cd02130 82 G------------LSGTLGE---------------PSGPYVPTVGISQEDGKALVAALAN 114 (122)
T ss_pred c------------cccccCC---------------CCCCEeeEEEecHHHHHHHHHHHhc
Confidence 1 1111110 0124699999999999999998853
No 14
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=99.25 E-value=1.4e-11 Score=111.05 Aligned_cols=72 Identities=25% Similarity=0.304 Sum_probs=56.6
Q ss_pred cccCCCCCcceeEEEEcCCChhh-HHHHHHcCCcccCcEEEEEeCCc--------c---------cchhHHHHHHHcCCe
Q 011575 157 HAYSPSGSAYGKVVFVNYGREED-YRALEAAGVNVSGCVVMARKGSV--------L---------SRSGVIFLAEAKGAI 218 (482)
Q Consensus 157 ~ays~~G~v~g~lVyvn~G~~eD-~~~L~~~gv~v~GkIvlvr~g~~--------~---------~~~~kv~~A~~~GA~ 218 (482)
++|+.+|.++|+|||||||+.++ +......++|++|||||++.+.+ + .+..|+++|+++||+
T Consensus 12 ~~~s~sg~vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~ 91 (151)
T cd04822 12 FAFSRSGAVTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAA 91 (151)
T ss_pred eccCCCCCceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCe
Confidence 57888899999999999998532 22222248999999999976531 1 146899999999999
Q ss_pred EEEEEecCCc
Q 011575 219 GVLLYAEWDR 228 (482)
Q Consensus 219 gvIi~~dp~d 228 (482)
|||+|+++.+
T Consensus 92 aVIv~~d~~~ 101 (151)
T cd04822 92 AVIVVNGPNS 101 (151)
T ss_pred EEEEEeCCcc
Confidence 9999999864
No 15
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.24 E-value=4.6e-11 Score=106.35 Aligned_cols=102 Identities=20% Similarity=0.323 Sum_probs=76.8
Q ss_pred ccccCCCCCcceeEEEEcCCChhhHHHHHHcCCcccCcEEEEEeCCcc----cchhHHHHHHHcCCeEEEEEecCCccCC
Q 011575 156 YHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVL----SRSGVIFLAEAKGAIGVLLYAEWDRLRG 231 (482)
Q Consensus 156 ~~ays~~G~v~g~lVyvn~G~~eD~~~L~~~gv~v~GkIvlvr~g~~~----~~~~kv~~A~~~GA~gvIi~~dp~d~~~ 231 (482)
|..+...|.++|+||+++-|. .||. +.+++|||||+++|.+. ++.+|+++|+++||+|||||++..+.
T Consensus 27 ~~s~~~~g~~tg~lv~~g~~g-~d~~-----~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~-- 98 (139)
T cd04817 27 YASMPVTGSATGSLYYCGTSG-GSYI-----CGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALA-- 98 (139)
T ss_pred ccccccCCcceEEEEEccCCC-cccc-----CCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCC--
Confidence 555677899999999998666 4765 56899999999999863 26899999999999999999985221
Q ss_pred CcceecceeccCCCCCCCCCCCCCCCccccccccccccCCCCCceeecCHHHHHHHHHhcC
Q 011575 232 GGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (482)
Q Consensus 232 ~~v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 292 (482)
+.+.+. .||+ .....||++.|++++++.|++.|+
T Consensus 99 -g~~~~~----lg~~----------------------~~~~~IP~v~is~~dG~~L~~~l~ 132 (139)
T cd04817 99 -GLQNPF----LVDT----------------------NNDTTIPSVSVDRADGQALLAALG 132 (139)
T ss_pred -Cccccc----ccCC----------------------CCCceEeEEEeeHHHHHHHHHHhc
Confidence 111110 0111 012479999999999999999885
No 16
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.18 E-value=1e-10 Score=105.26 Aligned_cols=94 Identities=26% Similarity=0.341 Sum_probs=75.9
Q ss_pred CCCCCcceeEEEEcCCChhhHHHHHHcCCcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEEecCCccCCCcceecce
Q 011575 160 SPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTV 239 (482)
Q Consensus 160 s~~G~v~g~lVyvn~G~~eD~~~L~~~gv~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~~dp~d~~~~~v~rg~v 239 (482)
.+.+.+++++||+++|+.+||. +.+++||||||+.|.+. +..|+.+|+++||+|||+|++.... .
T Consensus 21 ~~~~~~~~~lv~~g~g~~~d~~-----~~dv~GkIvL~~rg~c~-~~~K~~~a~~aGA~gvIi~n~~~~~----~----- 85 (143)
T cd02133 21 TDLLGKTYELVDAGLGTPEDFE-----GKDVKGKIALIQRGEIT-FVEKIANAKAAGAVGVIIYNNVDGL----I----- 85 (143)
T ss_pred CCCCCcEEEEEEccCCchhccC-----CCCccceEEEEECCCCC-HHHHHHHHHHCCCeEEEEeecCCCc----c-----
Confidence 4557889999999999999997 57899999999999886 8999999999999999999876311 0
Q ss_pred eccCCCCCCCCCCCCCCCccccccccccccCCCCCceeecCHHHHHHHHHhcCC
Q 011575 240 MRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (482)
Q Consensus 240 ~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g 293 (482)
. + . . .....||++.|++++++.|++.+..
T Consensus 86 --------~--~-~------~--------~~~~~iP~v~Is~~dG~~L~~~l~~ 114 (143)
T cd02133 86 --------P--G-T------L--------GEAVFIPVVFISKEDGEALKAALES 114 (143)
T ss_pred --------c--c-c------C--------CCCCeEeEEEecHHHHHHHHHHHhC
Confidence 0 0 0 0 0123589999999999999998853
No 17
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=99.16 E-value=1.1e-10 Score=117.96 Aligned_cols=114 Identities=22% Similarity=0.331 Sum_probs=97.2
Q ss_pred eeeeEeEEEEEEc-CCC-----CCCcEEEEeecCCCCC------CCCCCChhHHHHHHHHHHHHHHHHhc-CCCCCCcEE
Q 011575 327 KVATIHNVFAVIR-GLE-----EPNRYVLLGNHRDAWT------YGAIDPNSGTAALLDIARRYALLMRL-GWSPRRTII 393 (482)
Q Consensus 327 ~~~~~~Nvig~i~-G~~-----~~d~~ViigaH~Ds~~------~GA~D~~sG~a~llelar~l~~~~~~-g~~p~rtI~ 393 (482)
...++.||.|++. |-. +.-..|+|.||||+.+ .||+-||||+.+|||+||.|+++... .-+++.+++
T Consensus 189 ~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLl 268 (555)
T KOG2526|consen 189 PSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLL 268 (555)
T ss_pred CCCccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEE
Confidence 3468899999998 432 2357999999999876 39999999999999999999999843 357899999
Q ss_pred EEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEecccccC-Cccccc
Q 011575 394 FCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQG-PGFFAG 440 (482)
Q Consensus 394 f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~~g-~~~~~~ 440 (482)
|++.+|.-+++.|++.|+|-....+++++-..|++|.+|++ .+|.+.
T Consensus 269 F~lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mH 316 (555)
T KOG2526|consen 269 FILTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMH 316 (555)
T ss_pred EEEccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEE
Confidence 99999999999999999997777788899999999999998 666543
No 18
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.14 E-value=2e-10 Score=96.45 Aligned_cols=100 Identities=27% Similarity=0.349 Sum_probs=68.3
Q ss_pred CCCCCcceeEEEEcCCChhhHHHH-HHcCCcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEEecCCccCCCcceecc
Q 011575 160 SPSGSAYGKVVFVNYGREEDYRAL-EAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGT 238 (482)
Q Consensus 160 s~~G~v~g~lVyvn~G~~eD~~~L-~~~gv~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~~dp~d~~~~~v~rg~ 238 (482)
|+.|.++++||+.+++...+.... ...+.+++|||||++.|.+. +.+|+.+|+++||+|||+|+++.... .
T Consensus 1 ~~~~~~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~-~~~k~~~a~~~GA~gvIi~~~~~~~~---~---- 72 (101)
T PF02225_consen 1 SPSGTVTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCS-FDDKVRNAQKAGAKGVIIYNPPPNNG---S---- 72 (101)
T ss_dssp ---EEEEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSC-HHHHHHHHHHTTESEEEEE-TSCSCT---T----
T ss_pred CCCCCEEEEEEEecCCCCcccccccccCCccccceEEEEecCCCC-HHHHHHHHHHcCCEEEEEEeCCcccc---C----
Confidence 567889999997766554333332 23477999999999999987 89999999999999999999221100 0
Q ss_pred eeccCCCCCCCCCCCCCCCccccccccccccCCCCCceeecCHHHHHHHHHhc
Q 011575 239 VMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSL 291 (482)
Q Consensus 239 v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l 291 (482)
.+ + +.. .....||++.|+++++++|++.+
T Consensus 73 ------~~-~----------~~~-------~~~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 73 ------MI-D----------SED-------PDPIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp ------TT-C----------EBT-------TTSTBSEEEEE-HHHHHHHHHHH
T ss_pred ------cc-c----------ccC-------CCCcEEEEEEeCHHHHhhhhccC
Confidence 00 0 000 12346999999999999999764
No 19
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=99.11 E-value=1.4e-10 Score=103.44 Aligned_cols=66 Identities=29% Similarity=0.379 Sum_probs=55.3
Q ss_pred cccCCCCCcceeEEEEcCCCh------hhHHHHHHcCCcccCcEEEEEeCCcc-----------------cchhHHHHHH
Q 011575 157 HAYSPSGSAYGKVVFVNYGRE------EDYRALEAAGVNVSGCVVMARKGSVL-----------------SRSGVIFLAE 213 (482)
Q Consensus 157 ~ays~~G~v~g~lVyvn~G~~------eD~~~L~~~gv~v~GkIvlvr~g~~~-----------------~~~~kv~~A~ 213 (482)
+.++.++.++++||||+||.. +||+ ++|++|||||+..|.+. .+..|++.|+
T Consensus 12 ~~~~~~~~~~aelVfvGyGi~a~~~~~dDYa-----g~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~ 86 (142)
T cd04814 12 LNVDAVAIKDAPLVFVGYGIKAPELSWDDYA-----GLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAA 86 (142)
T ss_pred cCCCCccccceeeEEecCCcCCCCCChhhcC-----CCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHH
Confidence 356677889999999999965 5776 89999999999887651 1457999999
Q ss_pred HcCCeEEEEEecCC
Q 011575 214 AKGAIGVLLYAEWD 227 (482)
Q Consensus 214 ~~GA~gvIi~~dp~ 227 (482)
++||+|||+|+++.
T Consensus 87 ~~GA~gvIii~~~~ 100 (142)
T cd04814 87 RHGAAGVLIVHELA 100 (142)
T ss_pred HCCCcEEEEEeCCC
Confidence 99999999999874
No 20
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.00 E-value=3e-09 Score=94.67 Aligned_cols=106 Identities=23% Similarity=0.233 Sum_probs=72.4
Q ss_pred ccccCCCCCcceeEEEEcCCChhhHHHHHHcCCcccCcEEEEEeCCc------ccchhH-------HHHHHHcCCeEEEE
Q 011575 156 YHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSV------LSRSGV-------IFLAEAKGAIGVLL 222 (482)
Q Consensus 156 ~~ays~~G~v~g~lVyvn~G~~eD~~~L~~~gv~v~GkIvlvr~g~~------~~~~~k-------v~~A~~~GA~gvIi 222 (482)
|.+.++.+.++|++|+++ +.+++++. ...+++|||||+..+.+ . ++.| .++|+++||+|+|+
T Consensus 8 ~s~~t~~~gvta~vv~v~--~~~~~~~~--~~~~v~GKIvlv~~~~~~~~~~~~-~~~k~~~r~~~~~~A~~~GA~avIv 82 (134)
T cd04815 8 GSVATPPEGITAEVVVVK--SFDELKAA--PAGAVKGKIVFFNQPMVRTQTGSG-YGPTVAYRRRGAVEAAKKGAVAVLI 82 (134)
T ss_pred CCCCCCCCCcEEEEEEEC--CHHHHHhc--chhhcCCeEEEecCCccccCchhh-cCchhhhhhHHHHHHHhCCCEEEEE
Confidence 455566778999999996 23333322 14689999999998888 4 5666 79999999999999
Q ss_pred EecCCccCCCcceecceeccCCCCCCCCCCCCCCCccccccccccccCCCCCceeecCHHHHHHHHHhcCC
Q 011575 223 YAEWDRLRGGGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (482)
Q Consensus 223 ~~dp~d~~~~~v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g 293 (482)
++...... .. +.+..|. .. ...+.||++.|+.+++..|.+.++.
T Consensus 83 ~s~~~~~~--~~-----------~~~G~~~-------~~-------~~~~~IP~v~is~ed~~~L~r~l~~ 126 (134)
T cd04815 83 RSIGTDSH--RS-----------PHTGMMS-------YD-------DGVPKIPAAAISVEDADMLERLAAR 126 (134)
T ss_pred EecCcccC--CC-----------CcCCccc-------cC-------CCCCCCCEEEechhcHHHHHHHHhC
Confidence 98531100 00 0011110 10 1235799999999999999998863
No 21
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=99.00 E-value=2.4e-09 Score=103.89 Aligned_cols=95 Identities=21% Similarity=0.277 Sum_probs=77.6
Q ss_pred cEEEEeecCCCCC------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhccc
Q 011575 346 RYVLLGNHRDAWT------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLG 419 (482)
Q Consensus 346 ~~ViigaH~Ds~~------~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~GS~~~~~~~~~~~~ 419 (482)
++|++.|.+|+.. +||+.+.+|.++||++|++|+++.+..-+++|+|+|++|.||.+|++||..|+.+......
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~f 80 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGNF 80 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHHHHcCcC
Confidence 4899999999865 5999999999999999999998843223568999999999999999999999987654322
Q ss_pred ------------ccEEEEEEecccccCC--ccccc
Q 011575 420 ------------AKAVAYLNVDCAVQGP--GFFAG 440 (482)
Q Consensus 420 ------------~~~~a~inlD~~~~g~--~~~~~ 440 (482)
++|-.+|.++.+|... .+++.
T Consensus 81 ~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~l~~H 115 (234)
T PF05450_consen 81 PSDSLQFQPISLDNIDSVIELGQVGLSNSSGLYAH 115 (234)
T ss_pred cccccccccccHHHCCEEEEeeccCCCCCCCEEEE
Confidence 3788888888888763 35543
No 22
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.96 E-value=4.4e-09 Score=91.77 Aligned_cols=97 Identities=29% Similarity=0.429 Sum_probs=74.0
Q ss_pred CCCCCcceeEEEEcCCChhhHHHHHHcCCcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEEecCCccCCCcceecce
Q 011575 160 SPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTV 239 (482)
Q Consensus 160 s~~G~v~g~lVyvn~G~~eD~~~L~~~gv~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~~dp~d~~~~~v~rg~v 239 (482)
.+.|.+.+++++++++++ |+. +.+++|||||+++|.+. +..|+.+|+++||+|||+++++.+.. .
T Consensus 21 ~~~~~~~~~~~~C~~~~~-~~~-----~~~~~GkIvl~~~g~~~-~~~k~~~a~~~GA~gvii~~~~~~~~---~----- 85 (126)
T cd00538 21 SPVGVVAGPLVGCGYGTT-DDS-----GADVKGKIVLVRRGGCS-FSEKVKNAQKAGAKAVIIYNNGDDPG---P----- 85 (126)
T ss_pred CCccccccceEEEecCcc-ccc-----CCCccceEEEEECCCcC-HHHHHHHHHHCCCEEEEEEECCCCcc---c-----
Confidence 456788999999999987 554 56899999999999887 89999999999999999999864210 0
Q ss_pred eccCCCCCCCCCCCCCCCccccccccccccCCCCCceeecCHHHHHHHHHhcC
Q 011575 240 MRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (482)
Q Consensus 240 ~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 292 (482)
....|. .. .....||++.|+.++++.|++.+.
T Consensus 86 -------~~~~~~-------~~-------~~~~~iP~~~is~~~g~~l~~~~~ 117 (126)
T cd00538 86 -------QMGSVG-------LE-------STDPSIPTVGISYADGEALLSLLE 117 (126)
T ss_pred -------cccccc-------CC-------CCCCcEeEEEeCHHHHHHHHHHHh
Confidence 000000 00 012469999999999999999885
No 23
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.90 E-value=6.6e-09 Score=94.48 Aligned_cols=107 Identities=24% Similarity=0.303 Sum_probs=68.4
Q ss_pred CcceeEEEEcCCChh------hHHHHHHcCCcccCcEEEEEeCCcc------------------cchhHHHHHHHcCCeE
Q 011575 164 SAYGKVVFVNYGREE------DYRALEAAGVNVSGCVVMARKGSVL------------------SRSGVIFLAEAKGAIG 219 (482)
Q Consensus 164 ~v~g~lVyvn~G~~e------D~~~L~~~gv~v~GkIvlvr~g~~~------------------~~~~kv~~A~~~GA~g 219 (482)
.++++||||+||..+ ||+ ++||+|||||+..+.+. ....|++.|.++||+|
T Consensus 21 ~~~~elVFvGyGi~ape~~~dDy~-----g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~g 95 (157)
T cd04821 21 LKDSPLVFVGYGIVAPEYGWDDYK-----GLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAG 95 (157)
T ss_pred cccCCEEEeccCccCcccCccccc-----CCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeE
Confidence 368999999999753 666 89999999999966541 0124999999999999
Q ss_pred EEEEecCCccCCCcceecceeccCCCCCCCCCCCCCCCccccccccccccCCCCCce-eecCHHHHHHHHHhcC
Q 011575 220 VLLYAEWDRLRGGGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPS-LPLSFENAQIILGSLW 292 (482)
Q Consensus 220 vIi~~dp~d~~~~~v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~p~IP~-~~Is~~~a~~Ll~~l~ 292 (482)
||++.++.... -.. ..+ ...|.. .++.+... ....+.+++ .+|+.+.|++|++..+
T Consensus 96 vi~v~~~~~~~-~~~--~~~--------~~~~~~----~~~~~~~~--~~~~~~~~~~~~is~~~A~~lf~~ag 152 (157)
T cd04821 96 ALIVHETEPAS-YGW--SVV--------QSSWTG----EQFDLVRA--NPGAPRVKVEGWIQRDAAVKLFALAG 152 (157)
T ss_pred EEEEeCCCccc-CCh--hhh--------ccccCC----CceEeecc--cccCCCceEEEEECHHHHHHHHHhcC
Confidence 99998864211 001 011 111211 11221110 012344555 4799999999998653
No 24
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=98.83 E-value=1.1e-08 Score=107.52 Aligned_cols=80 Identities=25% Similarity=0.258 Sum_probs=70.7
Q ss_pred eEeEEEEEEcCCCCCCcEEEEeecCCCCCC-CCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCC-----
Q 011575 330 TIHNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFG----- 403 (482)
Q Consensus 330 ~~~Nvig~i~G~~~~d~~ViigaH~Ds~~~-GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~g----- 403 (482)
..-|++|+++|.++..+.|++|+|+|++.. |..|+..|+++.||++|.|++ .|.+|+|+|.+++|..||.+
T Consensus 54 ~~gN~~~~~~g~~~~~~~i~~gsHlDtv~~gG~~dg~~Gv~~~le~~~~l~~---~~~~~~~~i~vi~~~~EEg~rf~~~ 130 (406)
T TIGR03176 54 DVGNLYGRLVGTEFPEETILTGSHIDTVVNGGNLDGQFGALAAWLAVDYLKE---KYGAPLRTVEVLSMAEEEGSRFPYV 130 (406)
T ss_pred CCCcEEEEecCCCCCCCeEEEeccccCCCCCCccCchhhHHHHHHHHHHHHH---cCCCCCCCeEEEEeccccCccCCcc
Confidence 347999999998755679999999999998 568999999999999999964 46789999999999999976
Q ss_pred CccHHHHHH
Q 011575 404 MIGSTEWVE 412 (482)
Q Consensus 404 l~GS~~~~~ 412 (482)
++||+.|..
T Consensus 131 ~~Gs~~~~g 139 (406)
T TIGR03176 131 FWGSKNIFG 139 (406)
T ss_pred cccHHHHhC
Confidence 999999883
No 25
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.77 E-value=2.4e-08 Score=86.68 Aligned_cols=79 Identities=20% Similarity=0.164 Sum_probs=59.8
Q ss_pred hhhHHHHHHcCCcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEEecCCccCCCcceecceeccCCCCCCCCCCCCCC
Q 011575 177 EEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMRGVGDPLSPGWAGVEG 256 (482)
Q Consensus 177 ~eD~~~L~~~gv~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~~dp~d~~~~~v~rg~v~~~~Gdp~tP~~~s~~~ 256 (482)
.+||. ..+++|||+|+++|.+. +.+|+.+|+++||+|||||++.... + |.- .
T Consensus 35 ~~~~~-----~~~l~gkIaLV~RG~Cs-F~~K~~~Aq~aGA~aVII~nn~~~~-----~-------------~~~---~- 86 (120)
T cd02129 35 ASDVP-----PGGLKGKAVVVMRGNCT-FYEKARLAQSLGAEGLLIVSRERLV-----P-------------PSG---N- 86 (120)
T ss_pred ccccC-----ccccCCeEEEEECCCcC-HHHHHHHHHHCCCCEEEEEECCCCC-----C-------------CCC---C-
Confidence 45664 35799999999999998 9999999999999999999986311 0 000 0
Q ss_pred CccccccccccccCCCCCceeecCHHHHHHHHHhcC
Q 011575 257 GESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (482)
Q Consensus 257 ~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 292 (482)
... .....||++.|++++++.|++.++
T Consensus 87 ---~~~------~~~v~IP~v~Is~~dG~~i~~~l~ 113 (120)
T cd02129 87 ---RSE------YEKIDIPVALLSYKDMLDIQQTFG 113 (120)
T ss_pred ---CCC------CcCCcccEEEEeHHHHHHHHHHhc
Confidence 000 012469999999999999998875
No 26
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=98.72 E-value=8.9e-08 Score=96.92 Aligned_cols=149 Identities=21% Similarity=0.174 Sum_probs=96.5
Q ss_pred EEEEEeeeeeeeeEeEEEEEEcCCCCCCcEEEEeecCCCCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 011575 318 VNLTFQGKKKVATIHNVFAVIRGLEEPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSW 397 (482)
Q Consensus 318 v~l~~~~~~~~~~~~Nvig~i~G~~~~d~~ViigaH~Ds~~~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~ 397 (482)
.++.+++...+....-.--.|||. .++-|++++|.||... |+||.||.++++++||.|+++ +++.|.+|++.
T Consensus 104 Y~V~IdS~l~~G~L~ygE~~ipG~--s~~EillsthiCHPsm-ANdnLSG~~v~~~La~~L~~~-----~~rytYRflf~ 175 (386)
T PF09940_consen 104 YEVVIDSTLEDGSLTYGEFVIPGE--SDEEILLSTHICHPSM-ANDNLSGPAVLTFLAKWLKQL-----PNRYTYRFLFV 175 (386)
T ss_dssp EEEEEEEEEES-EEEEEEEEE--S--SS-EEEEEEE----S--TTTTHHHHHHHHHHHHHHTTS-------SSEEEEEEE
T ss_pred eEEEEeeeecCCceeEEEEEecCC--CCCeEEEEEeccCccc-ccccccHHHHHHHHHHHHhcC-----CcCceEEEEEc
Confidence 556666666666666666677896 4688999999999885 999999999999999999865 45689999999
Q ss_pred CCCcCCCccHHHHHHHhhhcccccEEEEEEecccccCCccccc----cCHhHHHHHHHHHhhCCC-----CCCCCccccc
Q 011575 398 DAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGPGFFAG----ATPQLDDILIEVTKMVKD-----PESESGTLYD 468 (482)
Q Consensus 398 ~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~~g~~~~~~----~sP~l~~~~~~~~~~v~~-----p~~~~~s~~~ 468 (482)
. +-+||-.|+.++.+.+++++.+-+++.|+|....+... +.-.+..++..+.+.... +-...++|-+
T Consensus 176 P----eTIGsI~yLskn~~~l~~~v~~G~vLtcvGD~~~~syk~Sr~g~~~iDr~~~~vl~~~~~~~~~~~F~~~GsDER 251 (386)
T PF09940_consen 176 P----ETIGSITYLSKNLDELKKNVKAGLVLTCVGDDGAYSYKRSRRGNTLIDRAAAHVLKHSGPNFKIYDFLPRGSDER 251 (386)
T ss_dssp -----TTHHHHHHHHH-GGGGGG-EEEEEE--S--SSS-EEEE--TTSSSHHHHHHHHHHHHSSS-EEEE---S-SSTHH
T ss_pred c----ccHHHHHHHHHCHHHHhhheeeeEEEEEecCCCCcceecCCCCCcHHHHHHHHHHHhcCCCceEecccccCCCcc
Confidence 8 57999999999999998779999999999987444332 333667777777776521 1123467777
Q ss_pred cccccC--cCCC
Q 011575 469 QWSAPN--RIFN 478 (482)
Q Consensus 469 ~~~~~~--~p~~ 478 (482)
.|-..| .|++
T Consensus 252 QfcSPG~dLPv~ 263 (386)
T PF09940_consen 252 QFCSPGFDLPVG 263 (386)
T ss_dssp HHTSTTT---EE
T ss_pred eeecCCcCCcee
Confidence 777776 3664
No 27
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.69 E-value=6.4e-08 Score=85.20 Aligned_cols=100 Identities=16% Similarity=0.157 Sum_probs=67.9
Q ss_pred CcceeEEEEc--CCCh-hhHHHHHHcCCcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEEecCCccCCCcceeccee
Q 011575 164 SAYGKVVFVN--YGRE-EDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVM 240 (482)
Q Consensus 164 ~v~g~lVyvn--~G~~-eD~~~L~~~gv~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~~dp~d~~~~~v~rg~v~ 240 (482)
.+.|+||.+. +|.. .++ ..+++|||+|+++|.+. +.+|+++|+++||+|||+|++...... .
T Consensus 16 ~~~g~l~~~~p~~gC~~~~~------~~~~~gkIaLv~RG~C~-f~~K~~~Aq~aGA~avII~n~~~~~~~----~---- 80 (126)
T cd02126 16 AGVGRVVKAKPYRACSEITN------AEEVKGKIAIMERGDCM-FVEKARRVQKAGAIGGIVIDNNEGSSS----D---- 80 (126)
T ss_pred CceEEEEeCCchhcccCCCC------ccccCceEEEEECCCCc-HHHHHHHHHHCCCcEEEEEECCCCccc----c----
Confidence 4678898884 5542 233 23689999999999998 999999999999999999986432100 0
Q ss_pred ccCCCCCCCCCCCCCCCccccccccccccCCCCCceeecCHHHHHHHHHhcCC
Q 011575 241 RGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (482)
Q Consensus 241 ~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g 293 (482)
..+..+-|.... ......||++.|+.++++.|++.+..
T Consensus 81 ---~~~~~~m~~~~~------------~~~~~~IP~v~I~~~dG~~L~~~l~~ 118 (126)
T cd02126 81 ---TAPMFAMSGDGD------------STDDVTIPVVFLFSKEGSKLLAAIKE 118 (126)
T ss_pred ---ccceeEeecCCC------------CCCCCeEEEEEEEHHHHHHHHHHHHh
Confidence 001111010000 00134799999999999999998853
No 28
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=98.66 E-value=7.3e-08 Score=101.12 Aligned_cols=78 Identities=28% Similarity=0.320 Sum_probs=68.5
Q ss_pred eEEEEEEcCCCCCCcEEEEeecCCCCCC-CCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcC-----CCc
Q 011575 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEF-----GMI 405 (482)
Q Consensus 332 ~Nvig~i~G~~~~d~~ViigaH~Ds~~~-GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~-----gl~ 405 (482)
.||+++++|...+.+.|++++|+|++.. |..|+..|++++|++++.|++ .|.+|+++|.|++|.+||. |++
T Consensus 54 ~nl~a~~~g~~~~~~~l~~~~H~DtV~~gg~~dg~~gvaa~l~a~~~l~~---~g~~~~~~i~~~~~~dEE~~~f~~~~~ 130 (401)
T TIGR01879 54 GNLIGRKEGTEPPLEVVLSGSHIDTVVNGGNFDGQLGVLAGIEVVDALKE---AYVVPLHPIEVVAFTEEEGSRFPYGMW 130 (401)
T ss_pred CcEEEEecCCCCCCCEEEEecccccCCCCCccCCHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEEeCCcCcCcccccc
Confidence 6999999987543589999999999986 578999999999999998864 4778999999999999997 789
Q ss_pred cHHHHHH
Q 011575 406 GSTEWVE 412 (482)
Q Consensus 406 GS~~~~~ 412 (482)
||..|+.
T Consensus 131 Gs~~~~~ 137 (401)
T TIGR01879 131 GSRNMVG 137 (401)
T ss_pred cHHHHhc
Confidence 9999875
No 29
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.64 E-value=2.2e-07 Score=83.16 Aligned_cols=95 Identities=17% Similarity=0.147 Sum_probs=68.0
Q ss_pred CCCcceeEEEEc--CCChhhHHHHHHcCCcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEEecCCccCCCcceecce
Q 011575 162 SGSAYGKVVFVN--YGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTV 239 (482)
Q Consensus 162 ~G~v~g~lVyvn--~G~~eD~~~L~~~gv~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~~dp~d~~~~~v~rg~v 239 (482)
.+.++++++.++ .|... + ..+++||||||++|.+. +.+|+++|+++||+|||+|++.... ..
T Consensus 35 ~~~~~~~lv~~~~~~gC~~-~------~~~~~g~IvLV~RG~C~-F~~K~~nA~~aGA~avIv~n~~~~~----~~---- 98 (139)
T cd02132 35 DNANKTRAVLANPLDCCSP-S------TSKLSGSIALVERGECA-FTEKAKIAEAGGASALLIINDQEEL----YK---- 98 (139)
T ss_pred cCccEEEEEECCcccccCC-C------CcccCCeEEEEECCCCC-HHHHHHHHHHcCCcEEEEEECCCcc----cc----
Confidence 356789999875 44322 2 13789999999999998 9999999999999999999865211 00
Q ss_pred eccCCCCCCCCCCCCCCCccccccccccccCCCCCceeecCHHHHHHHHHhcCC
Q 011575 240 MRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (482)
Q Consensus 240 ~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g 293 (482)
..+|+.. ......||++.|++++++.|++.+..
T Consensus 99 --------~~~~~~~-------------~~~~~~IP~v~Is~~~G~~L~~~l~~ 131 (139)
T cd02132 99 --------MVCEDND-------------TSLNISIPVVMIPQSAGDALNKSLDQ 131 (139)
T ss_pred --------cccCCCC-------------CCCCCcEeEEEecHHHHHHHHHHHHc
Confidence 0001100 00124699999999999999999853
No 30
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=98.61 E-value=1.1e-07 Score=104.44 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=70.3
Q ss_pred eEeEEEEEEcCCCCCCcEEEEeecCCCCCC-CCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcC-----C
Q 011575 330 TIHNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEF-----G 403 (482)
Q Consensus 330 ~~~Nvig~i~G~~~~d~~ViigaH~Ds~~~-GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~-----g 403 (482)
...||+|.++|.++..+.|++|+|+|++.. |.-|...|+++.||++|.|.+ .|.+|+++|.|+.|.+||. +
T Consensus 236 ~~gNv~~~~~g~~~~~p~v~~gSHlDTV~~gG~~DG~~Gv~a~l~~~~~l~~---~~~~~~~~i~vi~~~~EEg~rF~~~ 312 (591)
T PRK13799 236 AVGNVVGRYKAADDDAKTLITGSHYDTVRNGGKYDGREGIFLAIACVKELHE---QGERLPFHFEVIAFAEEEGQRFKAT 312 (591)
T ss_pred CCCCEEEEcCCCCCCCCeEEEeccccccCCCCccccHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEecCCCccCCCcc
Confidence 449999999998655679999999999987 568889999999999999965 4789999999999999997 7
Q ss_pred CccHHHHH
Q 011575 404 MIGSTEWV 411 (482)
Q Consensus 404 l~GS~~~~ 411 (482)
++||+.|+
T Consensus 313 ~~GS~~~~ 320 (591)
T PRK13799 313 FLGSGALI 320 (591)
T ss_pred ccchHHHh
Confidence 89999997
No 31
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.57 E-value=3.3e-07 Score=83.39 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=69.5
Q ss_pred CCCcceeEEEEc--CCC-hhhHHHHHHcCCcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEEecCCccCCCcceecc
Q 011575 162 SGSAYGKVVFVN--YGR-EEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGT 238 (482)
Q Consensus 162 ~G~v~g~lVyvn--~G~-~eD~~~L~~~gv~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~~dp~d~~~~~v~rg~ 238 (482)
.+.++|.|+++. .|. ..++..+ ...++.|||||+++|.+. +.+|+++|+++||+|||+|++..+.. .
T Consensus 37 ~~~~~g~lv~~~p~~gC~~~~~~~~--~~~~~~g~IvLV~RG~Ct-F~~Kv~nAq~aGA~avII~n~~~~~~---~---- 106 (153)
T cd02123 37 GSGLKGVLVVAEPLNACSPIENPPL--NSNASGSFIVLIRRGNCS-FETKVRNAQRAGYKAAIVYNDESNDL---I---- 106 (153)
T ss_pred CCceEEEEEeCCccccCCCCccccc--ccccCCCeEEEEECCCCC-HHHHHHHHHHCCCCEEEEEECCCCcc---e----
Confidence 567899999873 233 2332110 135789999999999998 99999999999999999998753210 0
Q ss_pred eeccCCCCCCCCCCCCCCCccccccccccccCCCCCceeecCHHHHHHHHHhcCC
Q 011575 239 VMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (482)
Q Consensus 239 v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g 293 (482)
.+ .++.. + .....||++.|+.++++.|++.+..
T Consensus 107 ~m--~~~~~-------------~-------~~~v~IP~v~Is~~dg~~L~~~l~~ 139 (153)
T cd02123 107 SM--SGNDQ-------------E-------IKGIDIPSVFVGKSTGEILKKYASY 139 (153)
T ss_pred ec--cCCCC-------------C-------CcCCEEEEEEeeHHHHHHHHHHHhc
Confidence 00 01100 0 0124799999999999999988853
No 32
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=98.56 E-value=1.8e-07 Score=102.98 Aligned_cols=78 Identities=21% Similarity=0.239 Sum_probs=67.5
Q ss_pred eEeEEEEEEcCCCCCCcEEEEeecCCCCCC-CCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcC-----C
Q 011575 330 TIHNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEF-----G 403 (482)
Q Consensus 330 ~~~Nvig~i~G~~~~d~~ViigaH~Ds~~~-GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~-----g 403 (482)
...||+|.++|..+..+.|++|+|+|++.+ |..|+..|++++||++|.|.+ .|.+++++|.|+.|.+||. +
T Consensus 236 ~~GNl~~~~~g~~~~~~~v~~gsHlDTV~~gG~~DG~~Gv~a~lea~~~l~~---~~~~~~~~i~vv~~~~EEg~rF~~~ 312 (591)
T PRK13590 236 AVGNVVGRYKGSTPQAKRLLTGSHYDTVRNGGKYDGRLGIFVPMACVRELHR---QGRRLPFGLEVVGFAEEEGQRYKAT 312 (591)
T ss_pred CCCCEEEEecCCCCCCCeEEEecccccCCCCCCcccHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEecCCccccCCcc
Confidence 349999999997643478999999999987 458999999999999999965 4778889999999999997 5
Q ss_pred CccHHHH
Q 011575 404 MIGSTEW 410 (482)
Q Consensus 404 l~GS~~~ 410 (482)
++||..|
T Consensus 313 ~~GS~~~ 319 (591)
T PRK13590 313 FLGSGAL 319 (591)
T ss_pred ccchHHH
Confidence 8999964
No 33
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.49 E-value=5.4e-07 Score=78.37 Aligned_cols=78 Identities=22% Similarity=0.201 Sum_probs=57.0
Q ss_pred CcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEEecCCccCCCcceecceeccCCCCCCCCCCCCCCCcccccccccc
Q 011575 188 VNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEV 267 (482)
Q Consensus 188 v~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~~dp~d~~~~~v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~ 267 (482)
.+++|||+|+++|.+. +.+|+.+|+++||+|||+|++..+.....+.. .+|.
T Consensus 31 ~~~~g~I~Lv~RG~C~-F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m------~~~~--------------------- 82 (118)
T cd02127 31 HDINGNIALIERGGCS-FLTKAINAQKAGALAVIITDVNNDSDEYYVEM------IQDD--------------------- 82 (118)
T ss_pred cccCCeEEEEECCCCC-HHHHHHHHHHCCCcEEEEEECCCCccccceEe------cCCC---------------------
Confidence 4789999999999998 99999999999999999998653210000000 0110
Q ss_pred ccCCCCCceeecCHHHHHHHHHhcCC
Q 011575 268 SKRFPKIPSLPLSFENAQIILGSLWG 293 (482)
Q Consensus 268 ~~~~p~IP~~~Is~~~a~~Ll~~l~g 293 (482)
......||++.|+.++++.|++.+..
T Consensus 83 ~~~~i~IP~v~Is~~dG~~L~~~l~~ 108 (118)
T cd02127 83 SSRRADIPAAFLLGKNGYMIRKTLER 108 (118)
T ss_pred CCCCceEEEEEecHHHHHHHHHHHHc
Confidence 00124699999999999999998853
No 34
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.44 E-value=2.1e-06 Score=76.71 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=67.3
Q ss_pred CCCCCcceeEEEEcC-----CCh-hhHHHHHHcCCcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEEecCCccCCCc
Q 011575 160 SPSGSAYGKVVFVNY-----GRE-EDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGG 233 (482)
Q Consensus 160 s~~G~v~g~lVyvn~-----G~~-eD~~~L~~~gv~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~~dp~d~~~~~ 233 (482)
++..++.|-||...- |.. -+.. ....+++|+||||++|.+. +.+|+++|+++||+|||+|++.....
T Consensus 26 ~~~~~~~G~l~~~~~~~~~~gC~~~~~~---~~~~~~~g~IaLV~RG~C~-F~~K~~nA~~aGA~aVIIyn~~~~~~--- 98 (138)
T cd02122 26 SPKEEAKGLVVVPDPPNDHYGCDPDTRF---PIPPNGEPWIALIQRGNCT-FEEKIKLAAERNASAVVIYNNPGTGN--- 98 (138)
T ss_pred CCCCccEEEEecCCCCCCcCCCCCCccc---cCCccCCCeEEEEECCCCC-HHHHHHHHHHCCCcEEEEEECCCCCC---
Confidence 666778888764432 221 1110 0024689999999999998 99999999999999999998753100
Q ss_pred ceecceeccCCCCCCCCCCCCCCCccccccccccccCCCCCceeecCHHHHHHHHHhcC
Q 011575 234 VERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (482)
Q Consensus 234 v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 292 (482)
++...+ . .....||++.|+..+|+.|++.+.
T Consensus 99 -----------~~~~m~-----------~------~~~~~ip~v~Is~~~G~~l~~~l~ 129 (138)
T cd02122 99 -----------ETVKMS-----------H------PGTGDIVAIMITNPKGMEILELLE 129 (138)
T ss_pred -----------ceeecc-----------C------CCCCcceEEEEcHHHHHHHHHHHH
Confidence 000000 0 012368999999999999999985
No 35
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.40 E-value=1.8e-06 Score=76.08 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=66.3
Q ss_pred CCcceeEEEEc---CCChhhHHHH---HHcCCcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEEecCCccCCCccee
Q 011575 163 GSAYGKVVFVN---YGREEDYRAL---EAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVER 236 (482)
Q Consensus 163 G~v~g~lVyvn---~G~~eD~~~L---~~~gv~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~~dp~d~~~~~v~r 236 (482)
+.+.|.|+|.- .|. ..+..- ++......++|||+++|.|. +..|+++|+++||++||+|++..+. -+
T Consensus 9 ~~~~G~l~~~~~~~~gC-~~~~~~~~~~~~~~~~~~~IvLv~RG~C~-F~~K~~~Aq~aGA~avII~n~~~~~---~~-- 81 (127)
T cd02125 9 GTLTGVVVYPKENRTGC-KEFDVFFKPKKSEPGRRPVILLLDRGGCF-FTLKAWNAQQAGAAAVLVADNVDEP---LL-- 81 (127)
T ss_pred CeeEEEEEecCCccccC-CCCcccccccccccCCCceEEEEECCCcC-HHHHHHHHHHCCCcEEEEEECCCCc---cc--
Confidence 35788888883 222 111110 00012467899999999998 9999999999999999999874210 00
Q ss_pred cceeccCCCCCCCCCCCCCCCccccccccccccCCCCCceeecCHHHHHHHHHhcCC
Q 011575 237 GTVMRGVGDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLWG 293 (482)
Q Consensus 237 g~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~g 293 (482)
+...+...+. +.. .....||++.|+.++++.|++.+..
T Consensus 82 -----------~m~~~~~~~~--~~~------~~~i~IP~v~Is~~~G~~L~~~l~~ 119 (127)
T cd02125 82 -----------TMDTPEESGS--ADY------IEKITIPSALITKAFGEKLKKAISN 119 (127)
T ss_pred -----------cccCcccccc--ccc------CCCceEeEEEECHHHHHHHHHHHhc
Confidence 0000000000 000 0123699999999999999999853
No 36
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=98.40 E-value=1e-06 Score=92.89 Aligned_cols=79 Identities=24% Similarity=0.300 Sum_probs=67.1
Q ss_pred eEEEEEEcCCCCCCcEEEEeecCCCCCC-CCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcC-----CCc
Q 011575 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEF-----GMI 405 (482)
Q Consensus 332 ~Nvig~i~G~~~~d~~ViigaH~Ds~~~-GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~-----gl~ 405 (482)
.|++++++|...+.+.|++.+|+|++.. |+.|+.+|+|++|++++.|.+ .+.+|+++|.|+++.+||. |++
T Consensus 61 ~nlia~~~g~~~~~~~l~~~~H~DtVp~~g~~D~~~g~aa~l~a~~~l~~---~~~~~~~~i~~~~~~dEE~~~~~~~~~ 137 (414)
T PRK12890 61 GNLFGRLPGRDPDLPPLMTGSHLDTVPNGGRYDGILGVLAGLEVVAALRE---AGIRPPHPLEVIAFTNEEGVRFGPSMI 137 (414)
T ss_pred CcEEEEeCCCCCCCCEEEEeCcccCCCCCCCcCCHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEEecccccccCCccc
Confidence 5999999986434578999999999986 568999999999999998864 3557889999999999997 678
Q ss_pred cHHHHHHH
Q 011575 406 GSTEWVEE 413 (482)
Q Consensus 406 GS~~~~~~ 413 (482)
||..+.+.
T Consensus 138 G~~~~~~~ 145 (414)
T PRK12890 138 GSRALAGT 145 (414)
T ss_pred cHHHHHcc
Confidence 99877654
No 37
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.39 E-value=1.1e-06 Score=76.28 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=55.7
Q ss_pred CcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEEecCCccCCCcceecceeccCCCCCCCCCCCCCCCcccccccccc
Q 011575 188 VNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSEV 267 (482)
Q Consensus 188 v~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~~dp~d~~~~~v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~~ 267 (482)
.+++||||||++|.+. +.+|+.+|+++||+|||+|++.... ... .+ ..++.
T Consensus 36 ~~l~gkIvLV~RG~Cs-F~~K~~nAq~aGA~avII~n~~~~~---~~~---~m------~~~~~---------------- 86 (117)
T cd04813 36 AEIDGKVALVLRGGCG-FLDKVMWAQRRGAKAVIVGDDEPGR---GLI---TM------FSNGD---------------- 86 (117)
T ss_pred CCcCCeEEEEECCCCC-HHHHHHHHHHCCCcEEEEEECCCcc---cce---ec------ccCCC----------------
Confidence 4789999999999998 9999999999999999999865310 000 00 00000
Q ss_pred ccCCCCCceeecCHHHHHHHHHhcC
Q 011575 268 SKRFPKIPSLPLSFENAQIILGSLW 292 (482)
Q Consensus 268 ~~~~p~IP~~~Is~~~a~~Ll~~l~ 292 (482)
.....||++.|++++++.|.+.++
T Consensus 87 -~~~v~IPav~Is~~~g~~L~~l~~ 110 (117)
T cd04813 87 -TDNVTIPAMFTSRTSYHLLSSLLP 110 (117)
T ss_pred -CCCcEEEEEEEcHHHHHHHHHhcc
Confidence 023479999999999999987764
No 38
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.9e-06 Score=83.61 Aligned_cols=127 Identities=20% Similarity=0.239 Sum_probs=94.3
Q ss_pred CCCCceeecCHHHHHHHHHhcCCCCccccccccCccCCCccCCCceEEEEEEeeeeeeeeEeEEEEEEcCCCCCCcEEEE
Q 011575 271 FPKIPSLPLSFENAQIILGSLWGGFVTQFLNDLGRVNGGRVGPGPTMVNLTFQGKKKVATIHNVFAVIRGLEEPNRYVLL 350 (482)
Q Consensus 271 ~p~IP~~~Is~~~a~~Ll~~l~g~~~~~~w~~~~~~~~~~~g~~~~~v~l~~~~~~~~~~~~Nvig~i~G~~~~d~~Vii 350 (482)
++++|--+=+++..+.|.+.+..- +|..... ..+-.+-.......|+|+++... ..++.++
T Consensus 62 v~Rvpgs~g~~~vr~~i~~~l~~l----~w~ve~~-------------~f~~~tp~g~~~f~nii~tl~~~--A~r~lVl 122 (338)
T KOG3946|consen 62 VPRVPGSPGSRQVRRFIIQHLRNL----GWAVETD-------------AFTDNTPLGTRNFNNLIATLDPN--ASRYLVL 122 (338)
T ss_pred ccccCCCCccHHHHHHHHHHHHhc----Cceeeec-------------cccccCcceeeeeeeEEEecCCC--cchheee
Confidence 567777788889999998888643 4433211 01111122345678999999765 4699999
Q ss_pred eecCCCCCC------CCCCChhHHHHHHHHHHHHHHHHh-cCCCCCCcEEEEEeCCCcC--------CCccHHHHHHHhh
Q 011575 351 GNHRDAWTY------GAIDPNSGTAALLDIARRYALLMR-LGWSPRRTIIFCSWDAEEF--------GMIGSTEWVEENL 415 (482)
Q Consensus 351 gaH~Ds~~~------GA~D~~sG~a~llelar~l~~~~~-~g~~p~rtI~f~~~~~eE~--------gl~GS~~~~~~~~ 415 (482)
.+|||+... ||.|.+.-+|+||++||++.+... .--++.-++..+||+|||. .+.||++.++.+.
T Consensus 123 achydsk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~DSlYGsRhLA~~~~ 202 (338)
T KOG3946|consen 123 ACHYDSKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPEDSLYGSRHLAAKWE 202 (338)
T ss_pred ecccccccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCccccchHHHHHHHHh
Confidence 999998753 899999999999999999987653 2346778999999999983 3689999998844
Q ss_pred h
Q 011575 416 V 416 (482)
Q Consensus 416 ~ 416 (482)
.
T Consensus 203 s 203 (338)
T KOG3946|consen 203 S 203 (338)
T ss_pred c
Confidence 3
No 39
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=98.33 E-value=1.6e-06 Score=91.52 Aligned_cols=76 Identities=28% Similarity=0.371 Sum_probs=65.2
Q ss_pred eEEEEEEcCCCCCCcEEEEeecCCCCCC-CCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCC-----Cc
Q 011575 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFG-----MI 405 (482)
Q Consensus 332 ~Nvig~i~G~~~~d~~ViigaH~Ds~~~-GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~g-----l~ 405 (482)
.||++.++|.+...+.|++++|+|++.. |..|..+|++++|++++.|++. +.+++++|.|++|.+||.| ++
T Consensus 63 gNl~a~~~g~~~~~~~l~~~~H~DtVp~gg~~D~k~Gv~a~l~a~~~l~~~---~~~~~~~i~v~~~~dEE~~~f~~~~~ 139 (414)
T PRK12891 63 GNLFARRAGRDPDAAPVMTGSHADSQPTGGRYDGIYGVLGGLEVVRALNDA---GIETERPVDVVIWTNEEGSRFAPSMV 139 (414)
T ss_pred CCEEEEecCCCCCCCeEEEEecccCCCCCccccchhhHHHHHHHHHHHHHc---CCCCCCCeEEEEecccccCcCCcccc
Confidence 4999999987543478999999999987 5589999999999999999753 6688999999999999985 57
Q ss_pred cHHHH
Q 011575 406 GSTEW 410 (482)
Q Consensus 406 GS~~~ 410 (482)
||..+
T Consensus 140 Gs~~~ 144 (414)
T PRK12891 140 GSGVF 144 (414)
T ss_pred cHHHH
Confidence 99755
No 40
>PRK09133 hypothetical protein; Provisional
Probab=98.21 E-value=8.5e-06 Score=87.38 Aligned_cols=82 Identities=27% Similarity=0.308 Sum_probs=69.1
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCC----------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCC
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~----------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p 388 (482)
..||++.++|... .+.|++.+|+|.+. .|+.|+-+|+|++|++++.|.+ .+.+|
T Consensus 88 ~~nli~~~~g~~~-~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~---~~~~~ 163 (472)
T PRK09133 88 KGNLVARLRGTDP-KKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKR---EGFKP 163 (472)
T ss_pred ceeEEEEecCCCC-CCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHh---cCCCC
Confidence 4799999988753 46799999999642 2899999999999999888854 46678
Q ss_pred CCcEEEEEeCCCc-CCCccHHHHHHHhhh
Q 011575 389 RRTIIFCSWDAEE-FGMIGSTEWVEENLV 416 (482)
Q Consensus 389 ~rtI~f~~~~~eE-~gl~GS~~~~~~~~~ 416 (482)
+++|.|++...|| .|..|+..+++++..
T Consensus 164 ~~~i~~~~~~dEE~~g~~G~~~l~~~~~~ 192 (472)
T PRK09133 164 KRDIILALTGDEEGTPMNGVAWLAENHRD 192 (472)
T ss_pred CCCEEEEEECccccCccchHHHHHHHHhh
Confidence 9999999999999 889999999987653
No 41
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=98.17 E-value=5.7e-06 Score=87.03 Aligned_cols=79 Identities=32% Similarity=0.442 Sum_probs=66.6
Q ss_pred eEEEEEEcCCCCCCcEEEEeecCCCCCC-CCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCC-----Cc
Q 011575 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFG-----MI 405 (482)
Q Consensus 332 ~Nvig~i~G~~~~d~~ViigaH~Ds~~~-GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~g-----l~ 405 (482)
.||+++++|..++.+.|++.+|+|+... |..|+..|++++|.+++.|++ .+++++++|+|+++.+||.| ++
T Consensus 63 ~n~~a~~~g~~~~~~~l~l~~H~DtVp~~g~~dgk~gvaa~l~a~~~l~~---~~~~~~~~v~~~~~~dEE~g~~~~~~~ 139 (412)
T PRK12893 63 GNLFGRRAGTDPDAPPVLIGSHLDTQPTGGRFDGALGVLAALEVVRTLND---AGIRTRRPIEVVSWTNEEGARFAPAML 139 (412)
T ss_pred CcEEEEeCCCCCCCCEEEEEecccCCCCCCcccchhhHHHHHHHHHHHHH---cCCCCCCCeEEEEEccccccccccccc
Confidence 4999999986534578999999999875 457888999999999998865 35678899999999999986 88
Q ss_pred cHHHHHHH
Q 011575 406 GSTEWVEE 413 (482)
Q Consensus 406 GS~~~~~~ 413 (482)
|+..+.+.
T Consensus 140 G~~~~~~~ 147 (412)
T PRK12893 140 GSGVFTGA 147 (412)
T ss_pred cHHHHhCc
Confidence 99888754
No 42
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=98.13 E-value=8.7e-06 Score=85.77 Aligned_cols=80 Identities=30% Similarity=0.391 Sum_probs=66.5
Q ss_pred eEEEEEEcCCCCCCcEEEEeecCCCCCC-CCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcC-----CCc
Q 011575 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEF-----GMI 405 (482)
Q Consensus 332 ~Nvig~i~G~~~~d~~ViigaH~Ds~~~-GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~-----gl~ 405 (482)
.||+++++|...+.+.|++.+|+|++.. |..|.-.|+|++|.+++.|.+ .++.|+++|.|++...||. |+.
T Consensus 60 ~nl~a~~~g~~~~~~~l~l~gH~DtVp~~g~~d~k~g~aa~l~a~~~l~~---~~~~~~~~i~~~~~~dEE~g~~g~~~~ 136 (413)
T PRK09290 60 GNLFGRLEGRDPDAPAVLTGSHLDTVPNGGRFDGPLGVLAGLEAVRTLNE---RGIRPRRPIEVVAFTNEEGSRFGPAML 136 (413)
T ss_pred CcEEEEecCCCCCCCEEEEecCccCCCCCCCcCCHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEEcCCccccccCccc
Confidence 5999999875323578999999999876 567889999999999998864 4667889999999999998 578
Q ss_pred cHHHHHHHh
Q 011575 406 GSTEWVEEN 414 (482)
Q Consensus 406 GS~~~~~~~ 414 (482)
|+..+++++
T Consensus 137 G~~~~~~~~ 145 (413)
T PRK09290 137 GSRVFTGAL 145 (413)
T ss_pred cHHHHHccc
Confidence 998887543
No 43
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=98.12 E-value=8.1e-06 Score=85.81 Aligned_cols=78 Identities=31% Similarity=0.471 Sum_probs=65.9
Q ss_pred eEEEEEEcCCCCCCcEEEEeecCCCCCC-CCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcC-----CCc
Q 011575 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEF-----GMI 405 (482)
Q Consensus 332 ~Nvig~i~G~~~~d~~ViigaH~Ds~~~-GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~-----gl~ 405 (482)
.|++++++|.. +.+.|++++|+|.+.. |-.|+-.|+|++|++++.|.+ .+++|+++|.|+++.+||. |+.
T Consensus 62 ~nl~a~~~g~~-~~~~l~l~gH~DtVp~~g~~dg~~Gvaa~l~a~~~l~~---~~~~~~~~i~~~~~~dEE~~~~~~~~~ 137 (412)
T PRK12892 62 GNVFGRLPGPG-PGPALLVGSHLDSQNLGGRYDGALGVVAGLEAARALNE---HGIATRHPLDVVAWCDEEGSRFTPGFL 137 (412)
T ss_pred CcEEEEecCCC-CCCeEEEEccccCCCCCCcccchHHHHHHHHHHHHHHH---cCCCCCCCeEEEEecCcccccccCccc
Confidence 49999999865 3478999999999887 446777899999999998864 4778899999999999998 578
Q ss_pred cHHHHHHH
Q 011575 406 GSTEWVEE 413 (482)
Q Consensus 406 GS~~~~~~ 413 (482)
||..++++
T Consensus 138 Gs~~~~~~ 145 (412)
T PRK12892 138 GSRAYAGR 145 (412)
T ss_pred cHHHHHcC
Confidence 99998853
No 44
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.11 E-value=7.5e-06 Score=71.60 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=55.2
Q ss_pred CcccCcEEEEEeCCc-ccchhHHHHHHHcCCeEEEEEecCCccCCCcceecceeccCCCCCCCCCCCCCCCccccccccc
Q 011575 188 VNVSGCVVMARKGSV-LSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSE 266 (482)
Q Consensus 188 v~v~GkIvlvr~g~~-~~~~~kv~~A~~~GA~gvIi~~dp~d~~~~~v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~ 266 (482)
.+++|||||++.+.+ . +..|+.+|++.||+|+|++++..+.. - . .
T Consensus 48 ~~v~GkIVlc~~~~~~~-~~~k~~~~~~~GA~gvI~~~~~~~~~---~-------------~-----------~------ 93 (126)
T cd02120 48 SKVKGKIVLCDRGGNTS-RVAKGDAVKAAGGAGMILANDPTDGL---D-------------V-----------V------ 93 (126)
T ss_pred hhccccEEEEeCCCCcc-HHHHHHHHHHcCCcEEEEEecCCCCc---e-------------e-----------c------
Confidence 579999999998887 5 78999999999999999998763210 0 0 0
Q ss_pred cccCCCCCceeecCHHHHHHHHHhcCC
Q 011575 267 VSKRFPKIPSLPLSFENAQIILGSLWG 293 (482)
Q Consensus 267 ~~~~~p~IP~~~Is~~~a~~Ll~~l~g 293 (482)
.....||++.|++++++.|++.++.
T Consensus 94 --~~~~~iP~v~I~~~~g~~l~~y~~~ 118 (126)
T cd02120 94 --ADAHVLPAVHVDYEDGTAILSYINS 118 (126)
T ss_pred --ccccccceEEECHHHHHHHHHHHHc
Confidence 0113599999999999999999864
No 45
>PRK07906 hypothetical protein; Provisional
Probab=98.11 E-value=1.2e-05 Score=84.98 Aligned_cols=82 Identities=28% Similarity=0.377 Sum_probs=68.1
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCC----------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCC
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~----------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p 388 (482)
..||+++++|..+..+.|++.+|+|.+. .|+.|+-+|++++|++++.|.+ .+.+|
T Consensus 51 ~~nv~~~~~g~~~~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~---~~~~~ 127 (426)
T PRK07906 51 RANVVARLPGADPSRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLAR---TGRRP 127 (426)
T ss_pred ceEEEEEEeCCCCCCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHH---cCCCC
Confidence 4799999998754456899999999753 2889999999999999999864 36678
Q ss_pred CCcEEEEEeCCCcCC-CccHHHHHHHhh
Q 011575 389 RRTIIFCSWDAEEFG-MIGSTEWVEENL 415 (482)
Q Consensus 389 ~rtI~f~~~~~eE~g-l~GS~~~~~~~~ 415 (482)
+++|.|+++..||.| ..|+..+++++.
T Consensus 128 ~~~i~~~~~~dEE~g~~~g~~~l~~~~~ 155 (426)
T PRK07906 128 PRDLVFAFVADEEAGGTYGAHWLVDNHP 155 (426)
T ss_pred CccEEEEEecCcccchhhhHHHHHHHHH
Confidence 899999999999986 469998887653
No 46
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.09 E-value=1.2e-05 Score=69.72 Aligned_cols=92 Identities=14% Similarity=0.174 Sum_probs=63.1
Q ss_pred cceeEEEEcCCC-hhhHHHHHHcCCcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEEecCCccCCCcceecceeccC
Q 011575 165 AYGKVVFVNYGR-EEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMRGV 243 (482)
Q Consensus 165 v~g~lVyvn~G~-~eD~~~L~~~gv~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~~dp~d~~~~~v~rg~v~~~~ 243 (482)
+.|++|...-.. .++... ..+++|||||++.|.+. +..|+.+|+++||+|+|+|++.....
T Consensus 17 ~~~~~~~~~~~~~C~~~~~----~~~v~GkIvL~~rg~c~-f~~k~~~a~~aGA~gvIi~~~~~~~~------------- 78 (118)
T cd04818 17 VLAGAAPASNTDGCTAFTN----AAAFAGKIALIDRGTCN-FTVKVLNAQNAGAIAVIVANNVAGGA------------- 78 (118)
T ss_pred eeEEEecCCcccccCCCCc----CCCCCCEEEEEECCCCC-HHHHHHHHHHCCCeEEEEEECCCCCc-------------
Confidence 567777653111 122221 24799999999998877 88999999999999999998753200
Q ss_pred CCCCCCCCCCCCCCccccccccccccCCCCCceeecCHHHHHHHHHhcC
Q 011575 244 GDPLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (482)
Q Consensus 244 Gdp~tP~~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 292 (482)
+.+.+.+ .....||++.|++++++.|++.+.
T Consensus 79 --~~~~~~~----------------~~~~~iP~v~V~~~~g~~l~~~l~ 109 (118)
T cd04818 79 --PITMGGD----------------DPDITIPAVMISQADGDALKAALA 109 (118)
T ss_pred --ceeccCC----------------CCCCEEeEEEecHHHHHHHHHHHh
Confidence 0010000 012359999999999999999986
No 47
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.04 E-value=1.7e-05 Score=70.00 Aligned_cols=37 Identities=35% Similarity=0.455 Sum_probs=34.7
Q ss_pred cccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEEecC
Q 011575 189 NVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEW 226 (482)
Q Consensus 189 ~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~~dp 226 (482)
+++||||||++|.+. +.+|+++|+++||+|||||++.
T Consensus 53 ~~~g~IaLv~rg~c~-f~~K~~nA~~aGA~aviiyn~~ 89 (129)
T cd02124 53 DLSGYIVLVRRGTCT-FATKAANAAAKGAKYVLIYNNG 89 (129)
T ss_pred cccCeEEEEECCCCC-HHHHHHHHHHcCCcEEEEEECC
Confidence 689999999999998 9999999999999999999865
No 48
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=98.04 E-value=2.1e-05 Score=82.82 Aligned_cols=80 Identities=28% Similarity=0.293 Sum_probs=67.4
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCC-------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCc
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT-------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRT 391 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~-------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p~rt 391 (482)
..||++.++|.. .+.|++.+|+|... .|+.|+.+|++++|++++.|.+. +.++..+
T Consensus 87 ~~~lia~~~g~~--~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~---~~~~~~~ 161 (410)
T PRK06133 87 GDMVVATFKGTG--KRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQL---GFKDYGT 161 (410)
T ss_pred CCeEEEEECCCC--CceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHc---CCCCCCC
Confidence 369999998763 36799999999864 37789999999999999998653 4567789
Q ss_pred EEEEEeCCCcCCCccHHHHHHHhh
Q 011575 392 IIFCSWDAEEFGMIGSTEWVEENL 415 (482)
Q Consensus 392 I~f~~~~~eE~gl~GS~~~~~~~~ 415 (482)
|+|++..+||.|..|+..++++..
T Consensus 162 i~~~~~~dEE~g~~G~~~~~~~~~ 185 (410)
T PRK06133 162 LTVLFNPDEETGSPGSRELIAELA 185 (410)
T ss_pred EEEEEECCcccCCccHHHHHHHHh
Confidence 999999999999899999998754
No 49
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=98.00 E-value=1.6e-05 Score=81.96 Aligned_cols=78 Identities=27% Similarity=0.330 Sum_probs=65.0
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCCC----------------CC----CCChhHHHHHHHHHHHHHHHHhcCCCCCC
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY----------------GA----IDPNSGTAALLDIARRYALLMRLGWSPRR 390 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~~----------------GA----~D~~sG~a~llelar~l~~~~~~g~~p~r 390 (482)
..|+++.++|.. +.+.|++.+|+|.... |+ .|..+|+|++|++++.|.+. + .|++
T Consensus 49 ~~~~~~~~~g~~-~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~---~-~~~~ 123 (361)
T TIGR01883 49 DNNLIARLPGTV-KFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTE---E-TPHG 123 (361)
T ss_pred CceEEEEEeCCC-CCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhc---C-CCCC
Confidence 479999998874 3478999999998662 44 68899999999999988653 3 4678
Q ss_pred cEEEEEeCCCcCCCccHHHHHHH
Q 011575 391 TIIFCSWDAEEFGMIGSTEWVEE 413 (482)
Q Consensus 391 tI~f~~~~~eE~gl~GS~~~~~~ 413 (482)
+|+|+++.+||.|..|+..|.+.
T Consensus 124 ~v~~~~~~~EE~g~~G~~~~~~~ 146 (361)
T TIGR01883 124 TIEFIFTVKEELGLIGMRLFDES 146 (361)
T ss_pred CEEEEEEcccccCchhHhHhChh
Confidence 99999999999999999988764
No 50
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=97.99 E-value=2.1e-05 Score=81.64 Aligned_cols=79 Identities=25% Similarity=0.275 Sum_probs=65.5
Q ss_pred eEEEEEEcCCCCCCcEEEEeecCCCCCC-----------------------CCCCChhHHHHHHHHHHHHHHHHhcCCCC
Q 011575 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGWSP 388 (482)
Q Consensus 332 ~Nvig~i~G~~~~d~~ViigaH~Ds~~~-----------------------GA~D~~sG~a~llelar~l~~~~~~g~~p 388 (482)
.|+++.++|.. +.+.|++.+|+|+... |+.|+.+|+|++|++++.|.+. +.++
T Consensus 52 ~~~~~~~~g~~-~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~---~~~~ 127 (375)
T TIGR01910 52 GKVVVKEPGNG-NEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREA---GIKP 127 (375)
T ss_pred cceEEeccCCC-CCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHc---CCCC
Confidence 46788888853 3468999999997642 6889999999999999988653 4467
Q ss_pred CCcEEEEEeCCCcCCCccHHHHHHHh
Q 011575 389 RRTIIFCSWDAEEFGMIGSTEWVEEN 414 (482)
Q Consensus 389 ~rtI~f~~~~~eE~gl~GS~~~~~~~ 414 (482)
+++|.|+++.+||.|..|+..++++.
T Consensus 128 ~~~i~~~~~~~EE~g~~G~~~~~~~~ 153 (375)
T TIGR01910 128 NGNIILQSVVDEESGEAGTLYLLQRG 153 (375)
T ss_pred CccEEEEEEcCcccCchhHHHHHHcC
Confidence 88999999999999999999998763
No 51
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=97.94 E-value=0.00012 Score=67.90 Aligned_cols=99 Identities=31% Similarity=0.304 Sum_probs=72.3
Q ss_pred EEeecCCCCC---------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCc-c
Q 011575 349 LLGNHRDAWT---------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMI-G 406 (482)
Q Consensus 349 iigaH~Ds~~---------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~-G 406 (482)
++.+|+|... .|+.|+..|++++|.+++.|.+ .+.+++++|.|++..+||.|.. |
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~---~~~~~~~~i~~~~~~~EE~g~~~g 77 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKE---SGDDLPGNIIFLFTPDEEIGSIGG 77 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHH---TTTTCSSEEEEEEESTCCGTSTTH
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHh---ccccccccccccccccccCCCcch
Confidence 4678888765 3899999999999999998865 3568899999999999999998 9
Q ss_pred HHHHHHHhhhcccccEEEEEEecccccC----Ccc-ccccCHhHHHHHHHHHhhCC
Q 011575 407 STEWVEENLVNLGAKAVAYLNVDCAVQG----PGF-FAGATPQLDDILIEVTKMVK 457 (482)
Q Consensus 407 S~~~~~~~~~~~~~~~~a~inlD~~~~g----~~~-~~~~sP~l~~~~~~~~~~v~ 457 (482)
+..++++. +...+..|....+ ... ....++.+.+.+.++++++.
T Consensus 78 ~~~l~~~~-------~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (189)
T PF01546_consen 78 AKHLLEEG-------AFFGLHPDYVIIGEPTGKGGVGSDNDPPLVQALQAAAQEVG 126 (189)
T ss_dssp HHHHHHHC-------EEEEEEESEEEECECETTSEEEHCTCHHHHHHHHHHHHHTT
T ss_pred hhhhhhhc-------ccccccccccccccccccccccccccHHHHHHHHHHHHHHh
Confidence 99998873 2222334443332 111 13356668888888888764
No 52
>PRK08596 acetylornithine deacetylase; Validated
Probab=97.92 E-value=4.1e-05 Score=80.94 Aligned_cols=80 Identities=29% Similarity=0.379 Sum_probs=67.3
Q ss_pred eEEEEEEcCCCCC-CcEEEEeecCCC--------CC---------------CCCCCChhHHHHHHHHHHHHHHHHhcCCC
Q 011575 332 HNVFAVIRGLEEP-NRYVLLGNHRDA--------WT---------------YGAIDPNSGTAALLDIARRYALLMRLGWS 387 (482)
Q Consensus 332 ~Nvig~i~G~~~~-d~~ViigaH~Ds--------~~---------------~GA~D~~sG~a~llelar~l~~~~~~g~~ 387 (482)
.||+++++|.... .+.|++.+|+|. |. .|+.|+-+|++++|.+++.|.+ .+++
T Consensus 63 ~nvia~~~g~~~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~---~~~~ 139 (421)
T PRK08596 63 PNVVGVKKGTESDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHE---AGIE 139 (421)
T ss_pred ceEEEEecCCCCCCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHH---cCCC
Confidence 6999999986432 257999999996 42 2899999999999999998854 3667
Q ss_pred CCCcEEEEEeCCCcCCCccHHHHHHHh
Q 011575 388 PRRTIIFCSWDAEEFGMIGSTEWVEEN 414 (482)
Q Consensus 388 p~rtI~f~~~~~eE~gl~GS~~~~~~~ 414 (482)
++++|.|++..+||.|..|+.+++++.
T Consensus 140 ~~~~v~~~~~~dEE~g~~G~~~~~~~~ 166 (421)
T PRK08596 140 LPGDLIFQSVIGEEVGEAGTLQCCERG 166 (421)
T ss_pred CCCcEEEEEEeccccCCcCHHHHHhcC
Confidence 889999999999999999999998764
No 53
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=97.86 E-value=8.2e-05 Score=77.63 Aligned_cols=80 Identities=23% Similarity=0.235 Sum_probs=65.8
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCCC-----------------------CCCCChhHHHHHHHHHHHHHHHHhcCCC
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGWS 387 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~~-----------------------GA~D~~sG~a~llelar~l~~~~~~g~~ 387 (482)
..|+++.++|.. +.+.|++.+|+|.... |+.|+-.|++++|.+++.|.+ .+.+
T Consensus 63 ~~nl~~~~~g~~-~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~---~~~~ 138 (400)
T PRK13983 63 RPNIVAKIPGGD-GKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMD---LGIR 138 (400)
T ss_pred CccEEEEecCCC-CCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHH---hCCC
Confidence 489999998864 3458999999997542 688999999999999888864 3557
Q ss_pred CCCcEEEEEeCCCcCCCc-cHHHHHHHh
Q 011575 388 PRRTIIFCSWDAEEFGMI-GSTEWVEEN 414 (482)
Q Consensus 388 p~rtI~f~~~~~eE~gl~-GS~~~~~~~ 414 (482)
++++|.|+++.+||.|.. |...+++++
T Consensus 139 ~~~~v~~~~~~dEE~g~~~g~~~~~~~~ 166 (400)
T PRK13983 139 PKYNLGLAFVSDEETGSKYGIQYLLKKH 166 (400)
T ss_pred CCCcEEEEEEeccccCCcccHHHHHhhc
Confidence 889999999999998874 888888764
No 54
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=97.84 E-value=0.00012 Score=75.21 Aligned_cols=79 Identities=28% Similarity=0.348 Sum_probs=69.4
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCC-----------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCC
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWS 387 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~-----------------------~GA~D~~sG~a~llelar~l~~~~~~g~~ 387 (482)
-++++.+++|+++.-.-|+|.+|.|.++ .|+.|.-+-.++.||++|.|. .+|.+
T Consensus 74 ~~~~l~T~~GS~P~L~silL~SH~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~---~~g~k 150 (420)
T KOG2275|consen 74 KYVLLYTWLGSDPELPSILLNSHTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLK---ASGFK 150 (420)
T ss_pred eeEEEEEeeCCCCCccceeeeccccccCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHH---hcCCC
Confidence 7899999999987778999999999533 289999888899999988874 56899
Q ss_pred CCCcEEEEEeCCCcCC-CccHHHHHH
Q 011575 388 PRRTIIFCSWDAEEFG-MIGSTEWVE 412 (482)
Q Consensus 388 p~rtI~f~~~~~eE~g-l~GS~~~~~ 412 (482)
|+|||...|-.+||.| ..|...+++
T Consensus 151 p~Rti~lsfvpDEEi~G~~Gm~~fa~ 176 (420)
T KOG2275|consen 151 PKRTIHLSFVPDEEIGGHIGMKEFAK 176 (420)
T ss_pred cCceEEEEecCchhccCcchHHHHhh
Confidence 9999999999999987 899999998
No 55
>PRK06837 acetylornithine deacetylase; Provisional
Probab=97.78 E-value=9.4e-05 Score=78.35 Aligned_cols=80 Identities=26% Similarity=0.243 Sum_probs=65.1
Q ss_pred eEeEEEEEEcCCCCCCcEEEEeecCCCCCC-----------------------CCCCChhHHHHHHHHHHHHHHHHhcCC
Q 011575 330 TIHNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGW 386 (482)
Q Consensus 330 ~~~Nvig~i~G~~~~d~~ViigaH~Ds~~~-----------------------GA~D~~sG~a~llelar~l~~~~~~g~ 386 (482)
...||++.++|..+..+.|++.+|+|.... |+.|+-+|++++|.+++.|.+ .+.
T Consensus 82 ~~~nl~a~~~g~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~---~~~ 158 (427)
T PRK06837 82 GAPNVVGTYRPAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRA---AGL 158 (427)
T ss_pred CCceEEEEecCCCCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHH---cCC
Confidence 358999999886533578999999997642 788999999999999887753 466
Q ss_pred CCCCcEEEEEeCCCcCCCccHHHHHH
Q 011575 387 SPRRTIIFCSWDAEEFGMIGSTEWVE 412 (482)
Q Consensus 387 ~p~rtI~f~~~~~eE~gl~GS~~~~~ 412 (482)
+|+++|.|++..+||.+..|+...+.
T Consensus 159 ~~~~~i~~~~~~dEE~~g~g~~~~~~ 184 (427)
T PRK06837 159 APAARVHFQSVIEEESTGNGALSTLQ 184 (427)
T ss_pred CCCCcEEEEEEeccccCCHhHHHHHh
Confidence 78899999999999987778766554
No 56
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=97.78 E-value=7.4e-05 Score=80.35 Aligned_cols=75 Identities=23% Similarity=0.120 Sum_probs=59.5
Q ss_pred eEEEEEEcCCC--CCCcEEEEeecCCCCCCC--------------------------C---CCChhHHHHHHHHHHHHHH
Q 011575 332 HNVFAVIRGLE--EPNRYVLLGNHRDAWTYG--------------------------A---IDPNSGTAALLDIARRYAL 380 (482)
Q Consensus 332 ~Nvig~i~G~~--~~d~~ViigaH~Ds~~~G--------------------------A---~D~~sG~a~llelar~l~~ 380 (482)
.|+++.++|.. +..+.|++.+|+|....| + .|...|++++|++++.
T Consensus 47 ~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~--- 123 (477)
T TIGR01893 47 GNVLIRKPATPGYENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED--- 123 (477)
T ss_pred CeEEEEEcCCCCCCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---
Confidence 69999998753 234689999999976543 3 3999999999998664
Q ss_pred HHhcCCCCCCcEEEEEeCCCcCCCccHHHHHHH
Q 011575 381 LMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEE 413 (482)
Q Consensus 381 ~~~~g~~p~rtI~f~~~~~eE~gl~GS~~~~~~ 413 (482)
...+.++|.++++..||.|+.||..+.++
T Consensus 124 ----~~~~~~~i~~~~~~dEE~g~~Gs~~l~~~ 152 (477)
T TIGR01893 124 ----NNLKHPPLELLFTVDEETGMDGALGLDEN 152 (477)
T ss_pred ----CCCCCCCEEEEEEeccccCchhhhhcChh
Confidence 12356799999999999999999998764
No 57
>PRK09104 hypothetical protein; Validated
Probab=97.77 E-value=0.00015 Score=77.66 Aligned_cols=82 Identities=22% Similarity=0.208 Sum_probs=66.8
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCC--------CC--------------------CCCCCChhHHHHHHHHHHHHHHHH
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDA--------WT--------------------YGAIDPNSGTAALLDIARRYALLM 382 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds--------~~--------------------~GA~D~~sG~a~llelar~l~~~~ 382 (482)
-.||++.++|.+...+.|++.+|+|. |. .|+.|+-.|++++|++++.|.+.
T Consensus 68 ~~~l~a~~~g~~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~- 146 (464)
T PRK09104 68 HPMVVAHHEGPTGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKAV- 146 (464)
T ss_pred CCEEEEEecCCCCCCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHh-
Confidence 36999999876434578999999997 21 16799999999999999999764
Q ss_pred hcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhh
Q 011575 383 RLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENL 415 (482)
Q Consensus 383 ~~g~~p~rtI~f~~~~~eE~gl~GS~~~~~~~~ 415 (482)
+-++..+|.|++.+.||.|..|...|+.+..
T Consensus 147 --~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~ 177 (464)
T PRK09104 147 --TGSLPVRVTILFEGEEESGSPSLVPFLEANA 177 (464)
T ss_pred --cCCCCCcEEEEEECccccCCccHHHHHHhhH
Confidence 2245678999999999999999999998654
No 58
>PRK13381 peptidase T; Provisional
Probab=97.76 E-value=9.8e-05 Score=77.57 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=64.6
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCCC------------------------------------------------CC-
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY------------------------------------------------GA- 361 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~~------------------------------------------------GA- 361 (482)
..||+|+++|..+..+.|++.+|+|+... |+
T Consensus 54 ~~nvi~~~~g~~~~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~ 133 (404)
T PRK13381 54 HAIVTAKLPGNTPGAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTS 133 (404)
T ss_pred CeEEEEEEecCCCCCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCcc
Confidence 36999999887532379999999998742 45
Q ss_pred ---CCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCccHHHHHHH
Q 011575 362 ---IDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEE 413 (482)
Q Consensus 362 ---~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~GS~~~~~~ 413 (482)
.|.-+|+|++|.+++.|.+. + .++.+|.|++..+||.|..|+..++.+
T Consensus 134 ~~g~DmKgg~aa~l~a~~~l~~~---~-~~~g~i~~~~~~dEE~g~~G~~~~~~~ 184 (404)
T PRK13381 134 VLGADNKAAIAVVMTLLENLTEN---E-VEHGDIVVAFVPDEEIGLRGAKALDLA 184 (404)
T ss_pred ccccccHHHHHHHHHHHHHHHhc---C-CCCCCEEEEEEcccccccccHHHHHHh
Confidence 78889999999999988653 2 356799999999999998999998764
No 59
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.76 E-value=0.00015 Score=76.58 Aligned_cols=79 Identities=24% Similarity=0.230 Sum_probs=64.1
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCC---------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCC
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT---------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPR 389 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~---------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p~ 389 (482)
..|++++++|.. +.+.|++.+|+|... .|+.|.-+|++++|.+++.|.+. +++++
T Consensus 71 ~~nlia~~~g~~-~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~---~~~~~ 146 (427)
T PRK13013 71 RWNLVARRQGAR-DGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAV---YPDFA 146 (427)
T ss_pred cceEEEEecCCC-CCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHh---CCCCC
Confidence 369999998864 357899999999642 18999999999999999988653 56778
Q ss_pred CcEEEEEeCCCcCCCccHHHHHHH
Q 011575 390 RTIIFCSWDAEEFGMIGSTEWVEE 413 (482)
Q Consensus 390 rtI~f~~~~~eE~gl~GS~~~~~~ 413 (482)
++|+|++..+||.|..|...|+.+
T Consensus 147 ~~v~~~~~~dEE~g~~~g~~~l~~ 170 (427)
T PRK13013 147 GSIEISGTADEESGGFGGVAYLAE 170 (427)
T ss_pred ccEEEEEEeccccCChhHHHHHHh
Confidence 899999999999887655555543
No 60
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=97.76 E-value=0.00018 Score=74.17 Aligned_cols=78 Identities=23% Similarity=0.207 Sum_probs=64.6
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCC----------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCC
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~----------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p 388 (482)
..||++.+.|.. .+.|++.+|+|... .|+.|+-+|++++|.+++.|.+. +.
T Consensus 46 ~~nl~~~~~~~~--~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~-----~~ 118 (364)
T TIGR01892 46 KSNLVAVIGPSG--AGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE-----QL 118 (364)
T ss_pred cccEEEEecCCC--CCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc-----Cc
Confidence 579999996642 35799999999642 27999999999999999999753 23
Q ss_pred CCcEEEEEeCCCcCCCccHHHHHHHhh
Q 011575 389 RRTIIFCSWDAEEFGMIGSTEWVEENL 415 (482)
Q Consensus 389 ~rtI~f~~~~~eE~gl~GS~~~~~~~~ 415 (482)
+++|.|++..+||.|..|+..++++..
T Consensus 119 ~~~v~~~~~~~EE~g~~G~~~~~~~~~ 145 (364)
T TIGR01892 119 KKPLHLALTADEEVGCTGAPKMIEAGA 145 (364)
T ss_pred CCCEEEEEEeccccCCcCHHHHHHhcC
Confidence 568999999999999999999998764
No 61
>PRK07907 hypothetical protein; Provisional
Probab=97.72 E-value=0.00022 Score=76.10 Aligned_cols=78 Identities=23% Similarity=0.167 Sum_probs=65.3
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCC-----------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCC
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWS 387 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~-----------------------~GA~D~~sG~a~llelar~l~~~~~~g~~ 387 (482)
..||++.++|.. +.+.|++.+|+|... .|+.|+-+|++++|.+++.| +.+
T Consensus 70 ~~nl~a~~~~~~-~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l------~~~ 142 (449)
T PRK07907 70 APAVIGTRPAPP-GAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL------GGD 142 (449)
T ss_pred CCEEEEEecCCC-CCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh------ccC
Confidence 479999998753 357899999999642 28999999999999999988 235
Q ss_pred CCCcEEEEEeCCCcCCCccHHHHHHHhh
Q 011575 388 PRRTIIFCSWDAEEFGMIGSTEWVEENL 415 (482)
Q Consensus 388 p~rtI~f~~~~~eE~gl~GS~~~~~~~~ 415 (482)
++++|.|++.+.||.|..|+.+|++++.
T Consensus 143 ~~~~i~~~~~~dEE~g~~g~~~~l~~~~ 170 (449)
T PRK07907 143 LPVGVTVFVEGEEEMGSPSLERLLAEHP 170 (449)
T ss_pred CCCcEEEEEEcCcccCCccHHHHHHhch
Confidence 6789999999999999999999998754
No 62
>PRK08262 hypothetical protein; Provisional
Probab=97.69 E-value=0.00019 Score=77.39 Aligned_cols=79 Identities=28% Similarity=0.425 Sum_probs=65.8
Q ss_pred eEEEEEEcCCCCCCcEEEEeecCCCCC-------------------------CCCCCChhHHHHHHHHHHHHHHHHhcCC
Q 011575 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT-------------------------YGAIDPNSGTAALLDIARRYALLMRLGW 386 (482)
Q Consensus 332 ~Nvig~i~G~~~~d~~ViigaH~Ds~~-------------------------~GA~D~~sG~a~llelar~l~~~~~~g~ 386 (482)
.|+++.++|..+..+.|++.+|+|... .|+.|+-+|++++|.+++.|.+. +.
T Consensus 98 ~~vv~~~~g~~~~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~---~~ 174 (486)
T PRK08262 98 HSLLYTWKGSDPSLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQ---GF 174 (486)
T ss_pred ccEEEEEECCCCCCCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHc---CC
Confidence 689999988753227899999999642 28999999999999999998653 55
Q ss_pred CCCCcEEEEEeCCCcCCCccHHHHHHH
Q 011575 387 SPRRTIIFCSWDAEEFGMIGSTEWVEE 413 (482)
Q Consensus 387 ~p~rtI~f~~~~~eE~gl~GS~~~~~~ 413 (482)
+++++|+|++..+||.|..|+.++++.
T Consensus 175 ~l~~~I~llf~~dEE~g~~G~~~l~~~ 201 (486)
T PRK08262 175 QPRRTIYLAFGHDEEVGGLGARAIAEL 201 (486)
T ss_pred CCCCeEEEEEecccccCCcCHHHHHHH
Confidence 678899999999999998899988865
No 63
>PRK07473 carboxypeptidase; Provisional
Probab=97.68 E-value=0.00019 Score=74.72 Aligned_cols=81 Identities=21% Similarity=0.209 Sum_probs=65.9
Q ss_pred eEEEEEEcCCCCCCcEEEEeecCCCCC-------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcE
Q 011575 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT-------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTI 392 (482)
Q Consensus 332 ~Nvig~i~G~~~~d~~ViigaH~Ds~~-------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI 392 (482)
.||++.++|.....+.|++.+|+|... .|+.|.-+|++++|.+++.|.+. +.+++.+|
T Consensus 62 ~~~~~~~~~~~~~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~---~~~~~~~v 138 (376)
T PRK07473 62 DCVRARFPHPRQGEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARA---GITTPLPI 138 (376)
T ss_pred CeEEEEeCCCCCCCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHc---CCCCCCCE
Confidence 589999976433346899999999652 28999999999999999999653 33455689
Q ss_pred EEEEeCCCcCCCccHHHHHHHhh
Q 011575 393 IFCSWDAEEFGMIGSTEWVEENL 415 (482)
Q Consensus 393 ~f~~~~~eE~gl~GS~~~~~~~~ 415 (482)
.|++..+||.|..|+..++++..
T Consensus 139 ~~~~~~dEE~g~~g~~~~~~~~~ 161 (376)
T PRK07473 139 TVLFTPDEEVGTPSTRDLIEAEA 161 (376)
T ss_pred EEEEeCCcccCCccHHHHHHHhh
Confidence 99999999999999999998653
No 64
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.68 E-value=0.00015 Score=75.23 Aligned_cols=78 Identities=29% Similarity=0.289 Sum_probs=64.2
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCCC-----------------------CCCCChhHHHHHHHHHHHHHHHHhcCCC
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGWS 387 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~~-----------------------GA~D~~sG~a~llelar~l~~~~~~g~~ 387 (482)
..|+++.+ |.. .+.|++.+|+|.... |+.|+-.|++++|.+++.|.+ .+.+
T Consensus 48 ~~~l~a~~-g~~--~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~---~~~~ 121 (377)
T PRK08588 48 RANLVAEI-GSG--SPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKE---QGQL 121 (377)
T ss_pred CceEEEEe-CCC--CceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHH---cCCC
Confidence 36999998 433 268999999996542 677999999999999998864 3557
Q ss_pred CCCcEEEEEeCCCcCCCccHHHHHHHh
Q 011575 388 PRRTIIFCSWDAEEFGMIGSTEWVEEN 414 (482)
Q Consensus 388 p~rtI~f~~~~~eE~gl~GS~~~~~~~ 414 (482)
++++|.|++..+||.|..|+..++++.
T Consensus 122 ~~~~i~l~~~~dEE~g~~G~~~~~~~~ 148 (377)
T PRK08588 122 LNGTIRLLATAGEEVGELGAKQLTEKG 148 (377)
T ss_pred CCCcEEEEEEcccccCchhHHHHHhcC
Confidence 789999999999999999999999863
No 65
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=97.63 E-value=0.00024 Score=74.89 Aligned_cols=78 Identities=21% Similarity=0.159 Sum_probs=60.9
Q ss_pred EeEEEEEEcCCCCC-CcEEEEeecCCCCCC-C------------------------------------------------
Q 011575 331 IHNVFAVIRGLEEP-NRYVLLGNHRDAWTY-G------------------------------------------------ 360 (482)
Q Consensus 331 ~~Nvig~i~G~~~~-d~~ViigaH~Ds~~~-G------------------------------------------------ 360 (482)
..||+|.++|.... .+.|++.||+|+... |
T Consensus 57 ~gnv~~~~~~~~~~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~ 136 (410)
T TIGR01882 57 NGYVIATIPSNTDKDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGT 136 (410)
T ss_pred ceEEEEEecCCCCCCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCC
Confidence 68999999997531 278999999998641 1
Q ss_pred ---CCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCccHHHHHH
Q 011575 361 ---AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVE 412 (482)
Q Consensus 361 ---A~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~GS~~~~~ 412 (482)
+.|+-+|+|+||.+++.|.+.. + .++.+|+|++..+||.| .|+..+..
T Consensus 137 ~l~G~D~KgglAa~l~A~~~L~e~~--~-~~~g~I~~~ft~dEE~g-~Ga~~l~~ 187 (410)
T TIGR01882 137 TLLGADDKAGIAEIMTAADYLINHP--E-IKHGTIRVAFTPDEEIG-RGAHKFDV 187 (410)
T ss_pred EeecccCHHHHHHHHHHHHHHHhCC--C-CCCCCEEEEEECcccCC-cCcchhhh
Confidence 2577889999999999997631 1 35678999999999988 58877654
No 66
>PRK06915 acetylornithine deacetylase; Validated
Probab=97.63 E-value=0.00021 Score=75.39 Aligned_cols=79 Identities=25% Similarity=0.286 Sum_probs=64.8
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCC-----------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCC
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWS 387 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~-----------------------~GA~D~~sG~a~llelar~l~~~~~~g~~ 387 (482)
..||++.++|.. +.+.|++.+|+|... .|+.|+-+|++++|.+++.|++ .+++
T Consensus 80 ~~nlia~~~g~~-~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~---~~~~ 155 (422)
T PRK06915 80 SPNIVATLKGSG-GGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIE---SGIE 155 (422)
T ss_pred CceEEEEEcCCC-CCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHH---cCCC
Confidence 489999998864 347899999999643 2788999999999999888864 3567
Q ss_pred CCCcEEEEEeCCCcCCCccHHHHHHH
Q 011575 388 PRRTIIFCSWDAEEFGMIGSTEWVEE 413 (482)
Q Consensus 388 p~rtI~f~~~~~eE~gl~GS~~~~~~ 413 (482)
++.+|.|++..+||.|..|+...+++
T Consensus 156 ~~~~v~~~~~~dEE~g~~G~~~~~~~ 181 (422)
T PRK06915 156 LKGDVIFQSVIEEESGGAGTLAAILR 181 (422)
T ss_pred CCCcEEEEEecccccCCcchHHHHhc
Confidence 77899999999999988898877664
No 67
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=97.58 E-value=0.0003 Score=73.74 Aligned_cols=80 Identities=24% Similarity=0.236 Sum_probs=64.9
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCC-----------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCC
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWS 387 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~-----------------------~GA~D~~sG~a~llelar~l~~~~~~g~~ 387 (482)
..|+++.++|.....+.|++.+|+|.+. .|+.|.-+|++++|.+++.|.+. +.+
T Consensus 57 ~~~l~~~~~g~~~~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~---~~~ 133 (400)
T TIGR01880 57 KPVVVLTWPGSNPELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKAS---GFK 133 (400)
T ss_pred ceeEEEEEecCCCCCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHc---CCC
Confidence 4689999988643236899999999653 17889999999999999998653 556
Q ss_pred CCCcEEEEEeCCCcCCC-ccHHHHHHH
Q 011575 388 PRRTIIFCSWDAEEFGM-IGSTEWVEE 413 (482)
Q Consensus 388 p~rtI~f~~~~~eE~gl-~GS~~~~~~ 413 (482)
++++|.|++..+||.|. .|..+++++
T Consensus 134 ~~~~v~l~~~~dEE~g~~~G~~~~~~~ 160 (400)
T TIGR01880 134 FKRTIHISFVPDEEIGGHDGMEKFAKT 160 (400)
T ss_pred CCceEEEEEeCCcccCcHhHHHHHHHh
Confidence 78899999999999875 599888865
No 68
>PRK07338 hypothetical protein; Provisional
Probab=97.52 E-value=0.0003 Score=73.71 Aligned_cols=79 Identities=20% Similarity=0.148 Sum_probs=65.4
Q ss_pred eEEEEEEcCCCCCCcEEEEeecCCCCC-------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcE
Q 011575 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT-------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTI 392 (482)
Q Consensus 332 ~Nvig~i~G~~~~d~~ViigaH~Ds~~-------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI 392 (482)
.||++.++|.. .+.|++.+|+|... .|+.|.-+|++++|.+++.|.+ .+.+++++|
T Consensus 81 ~nl~a~~~~~~--~~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~---~~~~~~~~i 155 (402)
T PRK07338 81 PALHVSVRPEA--PRQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFER---SPLADKLGY 155 (402)
T ss_pred CeEEEEECCCC--CccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHh---cCCCCCCCE
Confidence 69999997643 23599999999753 1788999999999999998854 355677899
Q ss_pred EEEEeCCCcCCCccHHHHHHHhh
Q 011575 393 IFCSWDAEEFGMIGSTEWVEENL 415 (482)
Q Consensus 393 ~f~~~~~eE~gl~GS~~~~~~~~ 415 (482)
.|++..+||.|..|+..++++..
T Consensus 156 ~~~~~~dEE~g~~g~~~~~~~~~ 178 (402)
T PRK07338 156 DVLINPDEEIGSPASAPLLAELA 178 (402)
T ss_pred EEEEECCcccCChhhHHHHHHHh
Confidence 99999999999999999998764
No 69
>PRK07522 acetylornithine deacetylase; Provisional
Probab=97.52 E-value=0.00046 Score=71.77 Aligned_cols=77 Identities=25% Similarity=0.257 Sum_probs=63.8
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCC----------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCC
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~----------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p 388 (482)
..||++.++|.. .+.|++.+|+|... .|+.|+-+|+|++|.+++.|.+. ++
T Consensus 52 ~~nv~a~~~~~~--~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~-----~~ 124 (385)
T PRK07522 52 KANLFATIGPAD--RGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA-----PL 124 (385)
T ss_pred cccEEEEeCCCC--CCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC-----CC
Confidence 479999996542 46899999999532 28999999999999999998753 35
Q ss_pred CCcEEEEEeCCCcCCCccHHHHHHHh
Q 011575 389 RRTIIFCSWDAEEFGMIGSTEWVEEN 414 (482)
Q Consensus 389 ~rtI~f~~~~~eE~gl~GS~~~~~~~ 414 (482)
+++|.|++..+||.|..|+..++++.
T Consensus 125 ~~~i~~~~~~dEE~g~~G~~~l~~~~ 150 (385)
T PRK07522 125 RRPLHLAFSYDEEVGCLGVPSMIARL 150 (385)
T ss_pred CCCEEEEEEeccccCCccHHHHHHHh
Confidence 67999999999999889999998764
No 70
>PRK05469 peptidase T; Provisional
Probab=97.51 E-value=0.00041 Score=72.94 Aligned_cols=79 Identities=18% Similarity=0.099 Sum_probs=63.6
Q ss_pred EeEEEEEEcCCC-CCCcEEEEeecCCCCCC------------------------------------------------CC
Q 011575 331 IHNVFAVIRGLE-EPNRYVLLGNHRDAWTY------------------------------------------------GA 361 (482)
Q Consensus 331 ~~Nvig~i~G~~-~~d~~ViigaH~Ds~~~------------------------------------------------GA 361 (482)
..||++.++|.. ++.+.|++-+|+|.... |+
T Consensus 55 ~~~v~~~~~g~~~~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~ 134 (408)
T PRK05469 55 NGYVMATLPANVDKDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGT 134 (408)
T ss_pred CeEEEEEecCCCCCCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCC
Confidence 458999999863 34588999999998821 44
Q ss_pred ----CCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCccHHHHHHH
Q 011575 362 ----IDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEE 413 (482)
Q Consensus 362 ----~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~GS~~~~~~ 413 (482)
.|.-+|+|++|.+++.|.+. +..++.+|+|++-.+||.| .|+..++.+
T Consensus 135 ~~lg~D~Kgglaa~l~a~~~l~~~---~~~~~g~v~~~f~~dEE~g-~Ga~~~~~~ 186 (408)
T PRK05469 135 TLLGADDKAGIAEIMTALEYLIAH---PEIKHGDIRVAFTPDEEIG-RGADKFDVE 186 (408)
T ss_pred EeecccchHHHHHHHHHHHHHHhC---CCCCCCCEEEEEecccccC-CCHHHhhhh
Confidence 89999999999999998653 3356789999999999998 799887643
No 71
>PRK08201 hypothetical protein; Provisional
Probab=97.50 E-value=0.00071 Score=72.24 Aligned_cols=81 Identities=23% Similarity=0.230 Sum_probs=66.0
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCC--------CC---------------CCCCCChhHHHHHHHHHHHHHHHHhcCCC
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDA--------WT---------------YGAIDPNSGTAALLDIARRYALLMRLGWS 387 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds--------~~---------------~GA~D~~sG~a~llelar~l~~~~~~g~~ 387 (482)
..||++.++|.. +.+.|++.+|+|. |. .|+.|.-+|+|++|++++.|.+. +.+
T Consensus 66 ~~~l~a~~~~~~-~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~---~~~ 141 (456)
T PRK08201 66 HPIVYADWLHAP-GKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKV---EGT 141 (456)
T ss_pred CCEEEEEecCCC-CCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHh---cCC
Confidence 358999987642 3568999999997 42 18999999999999999998653 224
Q ss_pred CCCcEEEEEeCCCcCCCccHHHHHHHhh
Q 011575 388 PRRTIIFCSWDAEEFGMIGSTEWVEENL 415 (482)
Q Consensus 388 p~rtI~f~~~~~eE~gl~GS~~~~~~~~ 415 (482)
++++|.|++...||.|..|+..|++++.
T Consensus 142 ~~~~i~~~~~~dEE~g~~g~~~~l~~~~ 169 (456)
T PRK08201 142 LPVNVKFCIEGEEEIGSPNLDSFVEEEK 169 (456)
T ss_pred CCCCEEEEEEcccccCCccHHHHHHhhH
Confidence 5679999999999999999999998754
No 72
>PRK06446 hypothetical protein; Provisional
Probab=97.45 E-value=0.00072 Score=71.86 Aligned_cols=79 Identities=22% Similarity=0.159 Sum_probs=64.7
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCC-----------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCC
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWS 387 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~-----------------------~GA~D~~sG~a~llelar~l~~~~~~g~~ 387 (482)
-.||++.+++. +.+.|++.+|+|.+. .|+.|.-+|++++|.+.+.|.+. + +
T Consensus 50 ~~~lia~~~~~--~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~---~-~ 123 (436)
T PRK06446 50 HPVVYGEINVG--AKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDK---H-K 123 (436)
T ss_pred CCEEEEEecCC--CCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHc---C-C
Confidence 47899999643 246899999999732 18999999999999998877532 2 4
Q ss_pred CCCcEEEEEeCCCcCCCccHHHHHHHhh
Q 011575 388 PRRTIIFCSWDAEEFGMIGSTEWVEENL 415 (482)
Q Consensus 388 p~rtI~f~~~~~eE~gl~GS~~~~~~~~ 415 (482)
+..+|.|++...||.|..|+..|++++.
T Consensus 124 ~~~~i~~~~~~dEE~g~~g~~~~l~~~~ 151 (436)
T PRK06446 124 LNVNVKFLYEGEEEIGSPNLEDFIEKNK 151 (436)
T ss_pred CCCCEEEEEEcccccCCHhHHHHHHHHH
Confidence 6779999999999999999999998754
No 73
>PRK07079 hypothetical protein; Provisional
Probab=97.44 E-value=0.00094 Score=71.63 Aligned_cols=82 Identities=18% Similarity=0.085 Sum_probs=67.4
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCC-------CC----C-------------CCCCChhHHHHHHHHHHHHHHHHhcCC
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDA-------WT----Y-------------GAIDPNSGTAALLDIARRYALLMRLGW 386 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds-------~~----~-------------GA~D~~sG~a~llelar~l~~~~~~g~ 386 (482)
-.||++.+.|.. +.+.|++.+|+|. |. + |+.|.-+|++++|.+++.|.+. .+.
T Consensus 72 ~~~vva~~~~~~-~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~--~~~ 148 (469)
T PRK07079 72 GPFLIAERIEDD-ALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAA--RGG 148 (469)
T ss_pred CCEEEEEeCCCC-CCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHh--cCC
Confidence 469999986642 3468999999994 42 1 8999999999999999988532 245
Q ss_pred CCCCcEEEEEeCCCcCCCccHHHHHHHhh
Q 011575 387 SPRRTIIFCSWDAEEFGMIGSTEWVEENL 415 (482)
Q Consensus 387 ~p~rtI~f~~~~~eE~gl~GS~~~~~~~~ 415 (482)
++.++|.|++...||.|..|+.++++++.
T Consensus 149 ~~~~~i~~~~~~dEE~g~~G~~~l~~~~~ 177 (469)
T PRK07079 149 RLGFNVKLLIEMGEEIGSPGLAEVCRQHR 177 (469)
T ss_pred CCCCCEEEEEECccccCCccHHHHHHHhH
Confidence 78899999999999999999999998764
No 74
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.41 E-value=0.00072 Score=70.00 Aligned_cols=78 Identities=23% Similarity=0.224 Sum_probs=62.2
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCCC-----------------------CCCCChhHHHHHHHHHHHHHHHHhcCCC
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGWS 387 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~~-----------------------GA~D~~sG~a~llelar~l~~~~~~g~~ 387 (482)
..|+++.+ |. +.+.|++.+|+|.... |+.|+-+|++++|.+++.|.+ .+.+
T Consensus 47 ~~n~~~~~-g~--~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~---~~~~ 120 (375)
T PRK13009 47 VKNLWARR-GT--EGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVA---AHPD 120 (375)
T ss_pred CcEEEEEe-cC--CCCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHH---hcCC
Confidence 46999987 64 3468999999997431 677999999999999988854 3556
Q ss_pred CCCcEEEEEeCCCcCC-CccHHHHHHHh
Q 011575 388 PRRTIIFCSWDAEEFG-MIGSTEWVEEN 414 (482)
Q Consensus 388 p~rtI~f~~~~~eE~g-l~GS~~~~~~~ 414 (482)
++++|+|+++.+||.+ ..|+..+++..
T Consensus 121 ~~~~i~~~~~~~EE~~~~~G~~~~~~~~ 148 (375)
T PRK13009 121 HKGSIAFLITSDEEGPAINGTVKVLEWL 148 (375)
T ss_pred CCceEEEEEEeecccccccCHHHHHHHH
Confidence 7899999999999975 46998887643
No 75
>PRK08652 acetylornithine deacetylase; Provisional
Probab=97.37 E-value=0.001 Score=68.06 Aligned_cols=73 Identities=22% Similarity=0.188 Sum_probs=59.8
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCC--------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT--------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCS 396 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~--------------~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~ 396 (482)
..|+++ |. .+.|++.+|+|... .|+.|+-+|+|++|.+++.|.+. .++.+|.|++
T Consensus 47 ~~~~~~---~~---~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~-----~~~~~v~~~~ 115 (347)
T PRK08652 47 VINIVV---NS---KAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKE-----FEDLNVGIAF 115 (347)
T ss_pred eeEEEc---CC---CCEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhc-----ccCCCEEEEE
Confidence 456665 32 35799999999864 48999999999999999998642 2456999999
Q ss_pred eCCCcCCCccHHHHHHHh
Q 011575 397 WDAEEFGMIGSTEWVEEN 414 (482)
Q Consensus 397 ~~~eE~gl~GS~~~~~~~ 414 (482)
..+||.|..|+..+++++
T Consensus 116 ~~dEE~g~~G~~~~~~~~ 133 (347)
T PRK08652 116 VSDEEEGGRGSALFAERY 133 (347)
T ss_pred ecCcccCChhHHHHHHhc
Confidence 999999888999988865
No 76
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=97.35 E-value=0.001 Score=69.88 Aligned_cols=83 Identities=27% Similarity=0.234 Sum_probs=70.3
Q ss_pred eEeEEEEEEcCCCCCCcEEEEeecCCCCC-----------------------CCCCCChhHHHHHHHHHHHHHHHHhcCC
Q 011575 330 TIHNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGW 386 (482)
Q Consensus 330 ~~~Nvig~i~G~~~~d~~ViigaH~Ds~~-----------------------~GA~D~~sG~a~llelar~l~~~~~~g~ 386 (482)
...|+++.+.|... ++.|+|.+|+|.++ .|+.|.-.++++++.+++.|.+. |.
T Consensus 61 ~~~n~~~~~~~~~~-~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~---~~ 136 (409)
T COG0624 61 GRPNLVARLGGGDG-GPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAA---GG 136 (409)
T ss_pred CceEEEEEecCCCC-CCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHh---CC
Confidence 35699999988753 48999999999643 28999999999999999988653 45
Q ss_pred CCCCcEEEEEeCCCcCCCccHHHHHHHhhh
Q 011575 387 SPRRTIIFCSWDAEEFGMIGSTEWVEENLV 416 (482)
Q Consensus 387 ~p~rtI~f~~~~~eE~gl~GS~~~~~~~~~ 416 (482)
.++++|.|++-..||.|..|...|+++...
T Consensus 137 ~~~~~v~~~~~~dEE~g~~~~~~~~~~~~~ 166 (409)
T COG0624 137 ELPGDVRLLFTADEESGGAGGKAYLEEGEE 166 (409)
T ss_pred CCCeEEEEEEEeccccCCcchHHHHHhcch
Confidence 678999999999999999999999998754
No 77
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=97.34 E-value=0.00078 Score=72.28 Aligned_cols=79 Identities=19% Similarity=0.156 Sum_probs=62.8
Q ss_pred EEEEEEcCCCCCCcEEEEeecCCCCC---------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCc
Q 011575 333 NVFAVIRGLEEPNRYVLLGNHRDAWT---------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRT 391 (482)
Q Consensus 333 Nvig~i~G~~~~d~~ViigaH~Ds~~---------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p~rt 391 (482)
|+++.+.+.. .++.|++.+|+|... .|+.|+-.|++++|.+++.|++ .+.+++++
T Consensus 67 ~~~~~~~~~~-~~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~---~~~~~~~~ 142 (466)
T TIGR01886 67 NYAGHVEYGA-GDERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKE---LGLPPSKK 142 (466)
T ss_pred CCceeEEecC-CCCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHH---hCCCCCCC
Confidence 4444443322 357899999999742 2899999999999999888854 46678899
Q ss_pred EEEEEeCCCcCCCccHHHHHHHhh
Q 011575 392 IIFCSWDAEEFGMIGSTEWVEENL 415 (482)
Q Consensus 392 I~f~~~~~eE~gl~GS~~~~~~~~ 415 (482)
|+|++...||.|..|+.+|++++.
T Consensus 143 i~~~~~~dEE~g~~g~~~~~~~~~ 166 (466)
T TIGR01886 143 IRFVVGTNEETGWVDMDYYFKHEE 166 (466)
T ss_pred EEEEEECccccCcccHHHHHhcCc
Confidence 999999999999999999998654
No 78
>PRK07318 dipeptidase PepV; Reviewed
Probab=97.30 E-value=0.00073 Score=72.46 Aligned_cols=78 Identities=21% Similarity=0.105 Sum_probs=63.7
Q ss_pred EEEEEEcCCCCCCcEEEEeecCCCCC---------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCc
Q 011575 333 NVFAVIRGLEEPNRYVLLGNHRDAWT---------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRT 391 (482)
Q Consensus 333 Nvig~i~G~~~~d~~ViigaH~Ds~~---------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p~rt 391 (482)
|+++.+++.. ..+.|++.+|+|.+. .|+.|.-+|+++++.+++.|.+ .+++++++
T Consensus 68 n~~~~~~~~~-~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~---~g~~~~~~ 143 (466)
T PRK07318 68 NYAGHIEYGE-GEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKE---LGLPLSKK 143 (466)
T ss_pred CccceEEECC-CCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHH---cCCCCCcc
Confidence 7777765322 235799999999642 2899999999999999888864 47778889
Q ss_pred EEEEEeCCCcCCCccHHHHHHHh
Q 011575 392 IIFCSWDAEEFGMIGSTEWVEEN 414 (482)
Q Consensus 392 I~f~~~~~eE~gl~GS~~~~~~~ 414 (482)
|.|++...||.|..|+.++++.+
T Consensus 144 i~l~~~~DEE~g~~G~~~l~~~~ 166 (466)
T PRK07318 144 VRFIVGTDEESGWKCMDYYFEHE 166 (466)
T ss_pred EEEEEEcccccCchhHHHHHHhC
Confidence 99999999999999999999875
No 79
>PRK08554 peptidase; Reviewed
Probab=97.27 E-value=0.0015 Score=69.47 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=66.5
Q ss_pred eEEEEEEcCCCCCCcEEEEeecCCCCC----------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCC
Q 011575 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPR 389 (482)
Q Consensus 332 ~Nvig~i~G~~~~d~~ViigaH~Ds~~----------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p~ 389 (482)
.|+++.+ |. .++.|++.+|+|... .|+.|+.+|++++|.+++.|.+. .++
T Consensus 53 ~~l~~~~-~~--~~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~-----~~~ 124 (438)
T PRK08554 53 YAVYGEI-GE--GKPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE-----PLN 124 (438)
T ss_pred eEEEEEe-CC--CCCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc-----CCC
Confidence 7889987 43 246799999999632 28999999999999999988642 356
Q ss_pred CcEEEEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEecc
Q 011575 390 RTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDC 430 (482)
Q Consensus 390 rtI~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~ 430 (482)
++|+|++...||.|..++..+++...... .+.-+.|+.|.
T Consensus 125 ~~i~l~~~~dEE~g~~~~~~~~~~~~~~~-~~~~~~iv~Ep 164 (438)
T PRK08554 125 GKVIFAFTGDEEIGGAMAMHIAEKLREEG-KLPKYMINADG 164 (438)
T ss_pred CCEEEEEEcccccCccccHHHHHHHHhcC-CCCCEEEEeCC
Confidence 78999999999998877776666543221 12334566665
No 80
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.26 E-value=0.0013 Score=67.38 Aligned_cols=75 Identities=29% Similarity=0.359 Sum_probs=59.8
Q ss_pred eEEEEEEcCCCCCCcEEEEeecCCCCC----------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEE
Q 011575 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT----------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFC 395 (482)
Q Consensus 332 ~Nvig~i~G~~~~d~~ViigaH~Ds~~----------------~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~ 395 (482)
.|+++++.+.. + ..|++.+|+|... .|+.|+.+|+|++|.+++.|. +++++|.|+
T Consensus 50 ~~~~~~~~~~~-~-~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~-------~~~~~i~~~ 120 (352)
T PRK13007 50 NSVVARTDLGR-P-SRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLA-------EPAHDLTLV 120 (352)
T ss_pred CeEEEEccCCC-C-CeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhh-------ccCCCeEEE
Confidence 58999995432 2 3599999999854 389999999999999999983 367899999
Q ss_pred EeCCCcCCC--ccHHHHHHHhh
Q 011575 396 SWDAEEFGM--IGSTEWVEENL 415 (482)
Q Consensus 396 ~~~~eE~gl--~GS~~~~~~~~ 415 (482)
+.++||.|. .|+..++.++.
T Consensus 121 ~~~~EE~~~~~~G~~~~~~~~~ 142 (352)
T PRK13007 121 FYDCEEVEAEANGLGRLAREHP 142 (352)
T ss_pred EEecccccCCcccHHHHHHhcc
Confidence 999999864 58888776543
No 81
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=97.24 E-value=0.00097 Score=68.59 Aligned_cols=74 Identities=24% Similarity=0.168 Sum_probs=61.7
Q ss_pred eEEEEEEcCCCCCCcEEEEeecCCCCC--------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 011575 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT--------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSW 397 (482)
Q Consensus 332 ~Nvig~i~G~~~~d~~ViigaH~Ds~~--------------~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~ 397 (482)
.|++|.+.+. .+.|++.+|+|... .|+.|+-+|+|++|++++.| . .+++++|.|++.
T Consensus 49 ~n~i~~~~~~---~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~-----~~~~~~i~~~~~ 119 (348)
T PRK04443 49 GNARGPAGDG---PPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-E-----ALVRARVSFVGA 119 (348)
T ss_pred CcEEEEcCCC---CCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-c-----ccCCCCEEEEEE
Confidence 5899998432 36899999999874 28999999999999999988 2 257789999999
Q ss_pred CCCcCCCccHHHHHHHh
Q 011575 398 DAEEFGMIGSTEWVEEN 414 (482)
Q Consensus 398 ~~eE~gl~GS~~~~~~~ 414 (482)
.+||.|..|...++.+.
T Consensus 120 ~dEE~g~~~~~~~l~~~ 136 (348)
T PRK04443 120 VEEEAPSSGGARLVADR 136 (348)
T ss_pred cccccCChhHHHHHHhc
Confidence 99999988888888754
No 82
>PRK05111 acetylornithine deacetylase; Provisional
Probab=97.24 E-value=0.001 Score=69.13 Aligned_cols=75 Identities=25% Similarity=0.337 Sum_probs=61.2
Q ss_pred eEEEEEEcCCCCCCcEEEEeecCCCCC----------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCC
Q 011575 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPR 389 (482)
Q Consensus 332 ~Nvig~i~G~~~~d~~ViigaH~Ds~~----------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p~ 389 (482)
.|+++++ |... +.|++.+|+|... .|+.|.-++++++|++++.|.+. ..+
T Consensus 61 ~nvia~~-g~~~--~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~-----~~~ 132 (383)
T PRK05111 61 FNLLASL-GSGE--GGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT-----KLK 132 (383)
T ss_pred ceEEEEe-CCCC--CeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc-----CCC
Confidence 6999999 5432 3599999999642 28999999999999999998642 245
Q ss_pred CcEEEEEeCCCcCCCccHHHHHHHh
Q 011575 390 RTIIFCSWDAEEFGMIGSTEWVEEN 414 (482)
Q Consensus 390 rtI~f~~~~~eE~gl~GS~~~~~~~ 414 (482)
.+|+|++..+||.|..|+..++++.
T Consensus 133 ~~i~~~~~~~EE~g~~G~~~~~~~~ 157 (383)
T PRK05111 133 KPLYILATADEETSMAGARAFAEAT 157 (383)
T ss_pred CCeEEEEEeccccCcccHHHHHhcC
Confidence 7899999999999989999999764
No 83
>PRK13004 peptidase; Reviewed
Probab=97.21 E-value=0.0014 Score=68.62 Aligned_cols=76 Identities=22% Similarity=0.195 Sum_probs=60.7
Q ss_pred eEEEEEEcCCCCCCcEEEEeecCCCCCC-----------------------CCCCChhHHHHHHHHHHHHHHHHhcCCCC
Q 011575 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-----------------------GAIDPNSGTAALLDIARRYALLMRLGWSP 388 (482)
Q Consensus 332 ~Nvig~i~G~~~~d~~ViigaH~Ds~~~-----------------------GA~D~~sG~a~llelar~l~~~~~~g~~p 388 (482)
.|+++.+.|. .+.|++.+|+|.... |+.|+-+|++++|.+++.|.+. +..+
T Consensus 59 ~n~~a~~~~~---~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~---~~~~ 132 (399)
T PRK13004 59 GNVLGYIGHG---KKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDL---GLDD 132 (399)
T ss_pred CeEEEEECCC---CcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhc---CCCC
Confidence 5899999764 267999999997542 6778889999999999988653 5567
Q ss_pred CCcEEEEEeCCCcC-CCccHHHHHHH
Q 011575 389 RRTIIFCSWDAEEF-GMIGSTEWVEE 413 (482)
Q Consensus 389 ~rtI~f~~~~~eE~-gl~GS~~~~~~ 413 (482)
+++|+|++..+||. |-.|+..++++
T Consensus 133 ~~~i~~~~~~~EE~~~g~~~~~~~~~ 158 (399)
T PRK13004 133 EYTLYVTGTVQEEDCDGLCWRYIIEE 158 (399)
T ss_pred CCeEEEEEEcccccCcchhHHHHHHh
Confidence 89999999999995 45677777765
No 84
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=97.20 E-value=0.0015 Score=64.71 Aligned_cols=130 Identities=26% Similarity=0.270 Sum_probs=92.6
Q ss_pred EcCCCCCCcEEEEeecCCCCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhc
Q 011575 338 IRGLEEPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVN 417 (482)
Q Consensus 338 i~G~~~~d~~ViigaH~Ds~~~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~GS~~~~~~~~~~ 417 (482)
++|. .++.|+|++|.+|... |+||-||.|++.=+|++|+.+ +.+.+-+|++-. +-+||-.|+.++.+-
T Consensus 173 ~rg~--~~~eiLlst~lCHPSm-aNdn~SG~all~~lak~l~~~-----ktrysYRfvf~P----~TiGsi~wLsrnee~ 240 (435)
T COG4310 173 HRGT--SKDEILLSTYLCHPSM-ANDNLSGLALLTFLAKALKSL-----KTRYSYRFVFAP----ETIGSIVWLSRNEEC 240 (435)
T ss_pred ccCC--ccceeeeeecccChhh-ccCccchHHHHHHHHHHHHhc-----cceeeEEEEecc----cccchhhhHhcchhH
Confidence 4666 4678999999999764 899999999999999999876 567889999765 468999999999887
Q ss_pred ccccEEEEEEecccccC--Cccc--cccCHhHHHHHHHHHhhCC------CCCCCCccccccccccCc--CCCCCC
Q 011575 418 LGAKAVAYLNVDCAVQG--PGFF--AGATPQLDDILIEVTKMVK------DPESESGTLYDQWSAPNR--IFNGLQ 481 (482)
Q Consensus 418 ~~~~~~a~inlD~~~~g--~~~~--~~~sP~l~~~~~~~~~~v~------~p~~~~~s~~~~~~~~~~--p~~~~~ 481 (482)
++ ++..-+-+-+.|.| ..+. ..+..++.+++..+.+.-. +--+ -++|-+.|...|. |++-||
T Consensus 241 lk-hvk~GlVlsClGD~g~~nykrtrrgna~iDki~~~tl~~~~s~~~~~dF~p-~G~DERQf~sPg~NLpvg~~~ 314 (435)
T COG4310 241 LK-HVKHGLVLSCLGDGGGPNYKRTRRGNALIDKIALHTLKHCGSNFKAADFLP-YGSDERQFCSPGFNLPVGGLQ 314 (435)
T ss_pred Hh-hhhcceEEEEecCCCCccceeccccchHHHHHHHHHHhcCCcCceeeeccc-CCCchhhccCCCcCCchhhhh
Confidence 74 67666767777765 2222 2355566777777665422 1111 2466666666653 776554
No 85
>PRK06156 hypothetical protein; Provisional
Probab=97.10 E-value=0.0031 Score=68.65 Aligned_cols=75 Identities=17% Similarity=0.089 Sum_probs=60.7
Q ss_pred EEEcCCCCCCcEEEEeecCCCCC---------------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCC
Q 011575 336 AVIRGLEEPNRYVLLGNHRDAWT---------------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (482)
Q Consensus 336 g~i~G~~~~d~~ViigaH~Ds~~---------------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p 388 (482)
..++|.. .+.|++.+|+|... .|+.|+-.|++++|.+++.|.+ .+.++
T Consensus 102 ~~~~g~~--~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~---~~~~~ 176 (520)
T PRK06156 102 IGLGGSG--SDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKAIKD---SGLPL 176 (520)
T ss_pred EEecCCC--CCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHHHHH---cCCCC
Confidence 5677643 35799999999542 1788999999999999888854 35567
Q ss_pred CCcEEEEEeCCCcCCCccHHHHHHHhh
Q 011575 389 RRTIIFCSWDAEEFGMIGSTEWVEENL 415 (482)
Q Consensus 389 ~rtI~f~~~~~eE~gl~GS~~~~~~~~ 415 (482)
+++|.|++..+||.|..|+.+|++++.
T Consensus 177 ~~~i~~~~~~dEE~g~~G~~~~~~~~~ 203 (520)
T PRK06156 177 ARRIELLVYTTEETDGDPLKYYLERYT 203 (520)
T ss_pred CceEEEEEecccccCchhHHHHHHhcC
Confidence 789999999999999999999998653
No 86
>PRK07205 hypothetical protein; Provisional
Probab=97.10 E-value=0.0023 Score=68.17 Aligned_cols=75 Identities=20% Similarity=0.095 Sum_probs=61.6
Q ss_pred EEEEEEcCCCCCCcEEEEeecCCCCC-----------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCC
Q 011575 333 NVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPR 389 (482)
Q Consensus 333 Nvig~i~G~~~~d~~ViigaH~Ds~~-----------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p~ 389 (482)
++++.+ |.. .+.|++.+|+|.+. .|+.|+-.|+|++|.+.+.|.+ .+.+++
T Consensus 66 ~~~~~~-g~~--~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~---~~~~~~ 139 (444)
T PRK07205 66 YGYAEI-GQG--EELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLD---AGVQFN 139 (444)
T ss_pred EEEEEe-cCC--CcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHH---cCCCCC
Confidence 556655 532 46899999999742 2899999999999999888854 467788
Q ss_pred CcEEEEEeCCCcCCCccHHHHHHH
Q 011575 390 RTIIFCSWDAEEFGMIGSTEWVEE 413 (482)
Q Consensus 390 rtI~f~~~~~eE~gl~GS~~~~~~ 413 (482)
++|+|++-..||.|..|+..|++.
T Consensus 140 ~~i~l~~~~dEE~g~~g~~~~~~~ 163 (444)
T PRK07205 140 KRIRFIFGTDEETLWRCMNRYNEV 163 (444)
T ss_pred CcEEEEEECCcccCcccHHHHHhC
Confidence 999999999999999999999874
No 87
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.08 E-value=0.0017 Score=67.71 Aligned_cols=76 Identities=32% Similarity=0.284 Sum_probs=60.8
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCC----------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCC
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~----------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p 388 (482)
..|+++.. |.. ++.|++.+|+|... .|+.|+-.|++++|++++.|.+. +
T Consensus 63 ~~~~~~~~-~~~--~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~---~--- 133 (394)
T PRK08651 63 RPNLIARR-GSG--NPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPA---G--- 133 (394)
T ss_pred cceEEEEe-CCC--CceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhc---C---
Confidence 46788865 332 37899999999532 26788999999999999988542 2
Q ss_pred CCcEEEEEeCCCcCCCccHHHHHHHhh
Q 011575 389 RRTIIFCSWDAEEFGMIGSTEWVEENL 415 (482)
Q Consensus 389 ~rtI~f~~~~~eE~gl~GS~~~~~~~~ 415 (482)
+++|+|++..+||.|..|+.+++++..
T Consensus 134 ~~~v~~~~~~~EE~g~~G~~~~~~~~~ 160 (394)
T PRK08651 134 DGNIELAIVPDEETGGTGTGYLVEEGK 160 (394)
T ss_pred CCCEEEEEecCccccchhHHHHHhccC
Confidence 689999999999998899999998654
No 88
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.01 E-value=0.0031 Score=63.47 Aligned_cols=102 Identities=25% Similarity=0.221 Sum_probs=68.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEecccccC------
Q 011575 361 AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQG------ 434 (482)
Q Consensus 361 A~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~~g------ 434 (482)
|.||-.|+++|+|++|.+++. ..+.+++|++..-||.|+.|+...+.+... .+ .|.+|.....
T Consensus 132 alDdR~g~~~lle~l~~l~~~-----~~~~~v~~v~tvqEEvG~rGA~~aa~~i~P----D~--ai~vD~~~a~d~~~~~ 200 (292)
T PF05343_consen 132 ALDDRAGCAVLLELLRELKEK-----ELDVDVYFVFTVQEEVGLRGAKTAAFRIKP----DI--AIAVDVTPAGDTPGSD 200 (292)
T ss_dssp THHHHHHHHHHHHHHHHHTTS-----S-SSEEEEEEESSCTTTSHHHHHHHHHH-C----SE--EEEEEEEEESSSTTST
T ss_pred eCCchhHHHHHHHHHHHHhhc-----CCCceEEEEEEeeeeecCcceeecccccCC----CE--EEEEeeeccCCCCCCc
Confidence 689999999999999988642 234899999999999999999876665332 22 4556654321
Q ss_pred ---------Cccc-----cccCHhHHHHHHHHHhhCCCCC-----CCCcccccccccc
Q 011575 435 ---------PGFF-----AGATPQLDDILIEVTKMVKDPE-----SESGTLYDQWSAP 473 (482)
Q Consensus 435 ---------~~~~-----~~~sP~l~~~~~~~~~~v~~p~-----~~~~s~~~~~~~~ 473 (482)
..+. ...+|.|.+.+.+++++..-|- ..+.||-..+...
T Consensus 201 ~~~~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~~~~~ 258 (292)
T PF05343_consen 201 EKEQGLGKGPVIRVGDSSMIPNPKLVDKLREIAEENGIPYQREVFSGGGTDAGAIQLS 258 (292)
T ss_dssp TTTSCTTS-EEEEEEETTEESHHHHHHHHHHHHHHTT--EEEEEESSSSSTHHHHHTS
T ss_pred hhhccCCCCcEEEEccCCCCCCHHHHHHHHHHHHHcCCCeEEEecCCcccHHHHHHHc
Confidence 1111 2356789999999998755442 2345666655543
No 89
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=97.00 E-value=0.0038 Score=64.96 Aligned_cols=80 Identities=23% Similarity=0.220 Sum_probs=62.0
Q ss_pred EEEEEEcCCCCCCcEEEEeecCCCCC---------------------------------CCCCCChhHHHHHHHHHHHHH
Q 011575 333 NVFAVIRGLEEPNRYVLLGNHRDAWT---------------------------------YGAIDPNSGTAALLDIARRYA 379 (482)
Q Consensus 333 Nvig~i~G~~~~d~~ViigaH~Ds~~---------------------------------~GA~D~~sG~a~llelar~l~ 379 (482)
||++++.+. +.+.|++.+|+|... .|+.|.-+|+|++|.+++.|.
T Consensus 42 nvva~~~~~--~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~ 119 (373)
T TIGR01900 42 NVLARTDFG--KASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLD 119 (373)
T ss_pred EEEEecCCC--CCCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHh
Confidence 999998543 245799999999641 178899999999999999885
Q ss_pred HHHhcCCCCCCcEEEEEeCCCcCC--CccHHHHHHHhh
Q 011575 380 LLMRLGWSPRRTIIFCSWDAEEFG--MIGSTEWVEENL 415 (482)
Q Consensus 380 ~~~~~g~~p~rtI~f~~~~~eE~g--l~GS~~~~~~~~ 415 (482)
+. +.+.+++.+|.|++..+||.| ..|+..+++++.
T Consensus 120 ~~-~~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~ 156 (373)
T TIGR01900 120 GR-APETELKHDLTLIAYDCEEVAAEKNGLGHIRDAHP 156 (373)
T ss_pred hh-ccccCCCCCEEEEEEecccccCCCCCHHHHHHhCc
Confidence 42 123356789999999999985 359988887643
No 90
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=97.00 E-value=0.0036 Score=66.85 Aligned_cols=66 Identities=24% Similarity=0.244 Sum_probs=56.6
Q ss_pred CcEEEEeecCCCCC---------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCC
Q 011575 345 NRYVLLGNHRDAWT---------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFG 403 (482)
Q Consensus 345 d~~ViigaH~Ds~~---------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~g 403 (482)
.+.|++.+|+|... .|+.|.-.|++++|.+++.|.+ .+.+|+++|.|++...||.|
T Consensus 67 ~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~---~~~~~~~~i~~~~~~dEE~g 143 (447)
T TIGR01887 67 EEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKE---LGLKLKKKIRFIFGTDEETG 143 (447)
T ss_pred CCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHH---cCCCCCCcEEEEEECCcccC
Confidence 35799999999542 2899999999999999988854 46678899999999999999
Q ss_pred CccHHHHHHH
Q 011575 404 MIGSTEWVEE 413 (482)
Q Consensus 404 l~GS~~~~~~ 413 (482)
..|+.+|+++
T Consensus 144 ~~g~~~~l~~ 153 (447)
T TIGR01887 144 WACIDYYFEH 153 (447)
T ss_pred cHhHHHHHHh
Confidence 9999999975
No 91
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=96.90 E-value=0.0045 Score=63.24 Aligned_cols=74 Identities=22% Similarity=0.212 Sum_probs=60.1
Q ss_pred eEEEEEEcCCCCCCcEEEEeecCCCCC--------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 011575 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT--------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSW 397 (482)
Q Consensus 332 ~Nvig~i~G~~~~d~~ViigaH~Ds~~--------------~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~ 397 (482)
.|+++.. |. ..+.|++.+|+|... .|+.|.-+|+|++|++.+.|.+. ..+|.|++.
T Consensus 40 ~~~~~~~-~~--~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~-------~~~i~~~~~ 109 (336)
T TIGR01902 40 GNFILGK-GD--GHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEK-------GIKVIVSGL 109 (336)
T ss_pred CcEEEEe-CC--CCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhC-------CCcEEEEEE
Confidence 4777765 33 246899999999863 38999999999999999988532 248999999
Q ss_pred CCCcCCCccHHHHHHHhh
Q 011575 398 DAEEFGMIGSTEWVEENL 415 (482)
Q Consensus 398 ~~eE~gl~GS~~~~~~~~ 415 (482)
.+||.|..|+.++++++.
T Consensus 110 ~dEE~g~~G~~~~~~~~~ 127 (336)
T TIGR01902 110 VDEESSSKGAREVIDKNY 127 (336)
T ss_pred eCcccCCccHHHHHhhcC
Confidence 999999999999998753
No 92
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=96.80 E-value=0.0083 Score=62.08 Aligned_cols=76 Identities=24% Similarity=0.235 Sum_probs=58.6
Q ss_pred eEEEEEEcCCCCCCcEEEEeecCCCCC-----------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCC
Q 011575 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (482)
Q Consensus 332 ~Nvig~i~G~~~~d~~ViigaH~Ds~~-----------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p 388 (482)
.|+++.. |. ..+.|++.+|+|... .|+.|.-.|++++|..++.+.+ .+.++
T Consensus 45 ~~~~~~~-g~--~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~---~~~~~ 118 (370)
T TIGR01246 45 KNLWATR-GT--GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVK---KNPDH 118 (370)
T ss_pred ceEEEEe-cC--CCcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHH---hcCCC
Confidence 6899986 43 346899999999743 1677998999999988876654 34456
Q ss_pred CCcEEEEEeCCCcCCC-ccHHHHHHH
Q 011575 389 RRTIIFCSWDAEEFGM-IGSTEWVEE 413 (482)
Q Consensus 389 ~rtI~f~~~~~eE~gl-~GS~~~~~~ 413 (482)
+.+|+|++..+||.+. .|+..+++.
T Consensus 119 ~~~v~~~~~~dEE~~~~~G~~~~~~~ 144 (370)
T TIGR01246 119 KGSISLLITSDEEGTAIDGTKKVVET 144 (370)
T ss_pred CCcEEEEEEeccccCCCcCHHHHHHH
Confidence 7899999999999764 699887764
No 93
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=96.62 E-value=0.0072 Score=62.39 Aligned_cols=106 Identities=18% Similarity=0.166 Sum_probs=74.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEeccccc-------
Q 011575 361 AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQ------- 433 (482)
Q Consensus 361 A~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~~------- 433 (482)
|.||-.|+++|+|++|.+++. +++.+++|++..-||.|+.|++.-+..... . ..|.+|....
T Consensus 176 alDdR~g~a~l~e~l~~l~~~-----~~~~~l~~~~tvqEEvG~rGA~~aa~~i~p----D--~aI~vDv~~~~d~~~~~ 244 (350)
T TIGR03107 176 AWDNRYGVLMILELLESLKDQ-----ELPNTLIAGANVQEEVGLRGAHVSTTKFNP----D--IFFAVDCSPAGDIYGDQ 244 (350)
T ss_pred ccccHHHHHHHHHHHHHhhhc-----CCCceEEEEEEChhhcCchhhhhHHhhCCC----C--EEEEEecCCcCCCCCCC
Confidence 568999999999999999643 477899999999999999999864443222 2 3466776432
Q ss_pred ------CCcc-----ccccCHhHHHHHHHHHhhCCCCC----CCCccccc--cccccCcCC
Q 011575 434 ------GPGF-----FAGATPQLDDILIEVTKMVKDPE----SESGTLYD--QWSAPNRIF 477 (482)
Q Consensus 434 ------g~~~-----~~~~sP~l~~~~~~~~~~v~~p~----~~~~s~~~--~~~~~~~p~ 477 (482)
|..+ ..-.+|.|.+.+.+++++..-|. ..++||-. .+...|+|+
T Consensus 245 ~~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q~~~~~gGtDa~~~~~~~~Gvpt 305 (350)
T TIGR03107 245 GGKLGEGTLLRFFDPGHIMLPRMKDFLLTTAEEAGIKYQYYVAKGGTDAGAAHLKNSGVPS 305 (350)
T ss_pred ccccCCCceEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEecCCCCchHHHHHHhCCCCcE
Confidence 2222 12357889999999998754332 22457766 455567775
No 94
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=96.59 E-value=0.011 Score=63.87 Aligned_cols=89 Identities=21% Similarity=0.174 Sum_probs=64.1
Q ss_pred EeEEEEEEcCCC--CCCcEEEEeecCCCCC--------------------------CCC---CCChhHHHHHHHHHHHHH
Q 011575 331 IHNVFAVIRGLE--EPNRYVLLGNHRDAWT--------------------------YGA---IDPNSGTAALLDIARRYA 379 (482)
Q Consensus 331 ~~Nvig~i~G~~--~~d~~ViigaH~Ds~~--------------------------~GA---~D~~sG~a~llelar~l~ 379 (482)
..|+++.+++.. +..+.|++.+|+|.+. .|+ .|++.|+|++|.+.+
T Consensus 52 ~gnvi~~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l~--- 128 (485)
T PRK15026 52 VGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLA--- 128 (485)
T ss_pred cCeEEEEEcCCCCCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHHH---
Confidence 369999987531 2346799999999653 255 499999999887642
Q ss_pred HHHhcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEeccc
Q 011575 380 LLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCA 431 (482)
Q Consensus 380 ~~~~~g~~p~rtI~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~ 431 (482)
+.+. +..+|.|++...||.|+.|+.++.... .+.-+.||+|..
T Consensus 129 ---~~~~-~~~~i~~l~t~dEE~G~~ga~~l~~~~-----~~~~~~i~~e~~ 171 (485)
T PRK15026 129 ---DENV-VHGPLEVLLTMTEEAGMDGAFGLQSNW-----LQADILINTDSE 171 (485)
T ss_pred ---hCCC-CCCCEEEEEEcccccCcHhHHHhhhcc-----CCcCEEEEeCCC
Confidence 2232 366899999999999999999875422 245567888764
No 95
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=96.59 E-value=0.012 Score=60.85 Aligned_cols=79 Identities=30% Similarity=0.275 Sum_probs=57.9
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCCCCC--------CCC--------hhHHHHHHHHHHHHHHHHhcCCCCCCcEEE
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTYGA--------IDP--------NSGTAALLDIARRYALLMRLGWSPRRTIIF 394 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~~GA--------~D~--------~sG~a~llelar~l~~~~~~g~~p~rtI~f 394 (482)
..|++++++|.. +.+.|++.+|+|....+. .++ .+++|++|.+++.|.+. +.+++++|.|
T Consensus 43 ~~~vva~~~~~~-~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~~~~~a~~l~a~~~l~~~---~~~~~~~i~~ 118 (363)
T TIGR01891 43 ATGVVATIGGGK-PGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGHDLHTAILLGTAKLLKKL---ADLLEGTVRL 118 (363)
T ss_pred CcEEEEEEeCCC-CCCEEEEEeccCCCCcccccCCCcccCCCCceecCcCHHHHHHHHHHHHHHHhc---hhhCCceEEE
Confidence 378999997753 346899999999865210 011 25688888888887654 2356789999
Q ss_pred EEeCCCcCCCccHHHHHHHh
Q 011575 395 CSWDAEEFGMIGSTEWVEEN 414 (482)
Q Consensus 395 ~~~~~eE~gl~GS~~~~~~~ 414 (482)
++..+||.| .|+..++++.
T Consensus 119 ~~~~dEE~~-~G~~~~~~~~ 137 (363)
T TIGR01891 119 IFQPAEEGG-GGATKMIEDG 137 (363)
T ss_pred EEeecCcCc-chHHHHHHCC
Confidence 999999986 7998887754
No 96
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=96.56 E-value=0.0049 Score=63.27 Aligned_cols=61 Identities=25% Similarity=0.307 Sum_probs=52.3
Q ss_pred EEEEeecCCCCC--------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCccHHHHHH
Q 011575 347 YVLLGNHRDAWT--------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVE 412 (482)
Q Consensus 347 ~ViigaH~Ds~~--------------~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~GS~~~~~ 412 (482)
.|++.+|+|+.. .|+.|+-+|+|++|.+++.|.+ .+ .+|.|+++.+||.|..|+.++++
T Consensus 62 ~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~---~~----~~i~~~~~~dEE~g~~G~~~l~~ 134 (346)
T PRK00466 62 DILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNE---KG----IKVMVSGLADEESTSIGAKELVS 134 (346)
T ss_pred eEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHH---cC----CCEEEEEEcCcccCCccHHHHHh
Confidence 599999999864 4899999999999999998854 23 35899999999999899999988
Q ss_pred Hh
Q 011575 413 EN 414 (482)
Q Consensus 413 ~~ 414 (482)
+.
T Consensus 135 ~~ 136 (346)
T PRK00466 135 KG 136 (346)
T ss_pred cC
Confidence 64
No 97
>PRK09961 exoaminopeptidase; Provisional
Probab=96.41 E-value=0.01 Score=61.17 Aligned_cols=107 Identities=18% Similarity=0.120 Sum_probs=73.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEecccccC-----
Q 011575 360 GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQG----- 434 (482)
Q Consensus 360 GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~~g----- 434 (482)
-|.||-.|+++++|++|.+++. ++..+|+|+++.-||.|+.|++.-...... .+ .|.+|....+
T Consensus 163 kalDnR~g~~~lle~l~~l~~~-----~~~~~v~~~~tvqEEvG~rGa~~aa~~i~p----d~--~I~vDv~~~~d~~~~ 231 (344)
T PRK09961 163 KAFDDRLGCYLLVTLLRELHDA-----ELPAEVWLVASSSEEVGLRGGQTATRAVSP----DV--AIVLDTACWAKNFDY 231 (344)
T ss_pred eechhhHhHHHHHHHHHHhhhc-----CCCceEEEEEEcccccchHHHHHHHhccCC----CE--EEEEeccCCCCCCCC
Confidence 3679999999999999988642 467899999999999999999875543322 22 4667765332
Q ss_pred -----------Ccc-----ccccCHhHHHHHHHHHhhCCCCCC-----CCccccccccc--cCcCC
Q 011575 435 -----------PGF-----FAGATPQLDDILIEVTKMVKDPES-----ESGTLYDQWSA--PNRIF 477 (482)
Q Consensus 435 -----------~~~-----~~~~sP~l~~~~~~~~~~v~~p~~-----~~~s~~~~~~~--~~~p~ 477 (482)
..+ ..-..|.+.+.+.+++++..-|-. .++||-..+.. .|.|+
T Consensus 232 ~~~~~~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~ggGTDa~~~~~~~~Gipt 297 (344)
T PRK09961 232 GAANHRQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIGIPLQADMFSNGGTDGGAVHLTGTGVPT 297 (344)
T ss_pred CCCcccccCCCceEEEccCCcCCCHHHHHHHHHHHHHcCCCcEEEecCCCcchHHHHHHhCCCCCE
Confidence 111 123568889999999997654321 23576665544 56664
No 98
>PLN02693 IAA-amino acid hydrolase
Probab=96.38 E-value=0.015 Score=62.00 Aligned_cols=78 Identities=26% Similarity=0.266 Sum_probs=59.2
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCCC-------------C---CCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEE
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTY-------------G---AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIF 394 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~~-------------G---A~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f 394 (482)
..||+|.+.+. +.+.|++.+|+|+... | +.|--+++|++|.+++.|++.. ...+.+|+|
T Consensus 90 ~~~via~~g~~--~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~---~~~~g~V~~ 164 (437)
T PLN02693 90 ITGIIGYIGTG--EPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHR---HHLQGTVVL 164 (437)
T ss_pred CcEEEEEECCC--CCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCc---ccCCceEEE
Confidence 48999999422 3478999999998752 1 3444558999999999997642 234678999
Q ss_pred EEeCCCcCCCccHHHHHHHh
Q 011575 395 CSWDAEEFGMIGSTEWVEEN 414 (482)
Q Consensus 395 ~~~~~eE~gl~GS~~~~~~~ 414 (482)
++-.+|| +..|+..++++.
T Consensus 165 if~pdEE-~~~Ga~~~i~~g 183 (437)
T PLN02693 165 IFQPAEE-GLSGAKKMREEG 183 (437)
T ss_pred EEEEccc-chhhHHHHHHCC
Confidence 9999999 557999888764
No 99
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.13 E-value=0.011 Score=61.81 Aligned_cols=95 Identities=18% Similarity=0.100 Sum_probs=65.2
Q ss_pred ceeEEEEcCCChhhHHHHHHcCCcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEEecCCccCCCcceecceeccCCC
Q 011575 166 YGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMRGVGD 245 (482)
Q Consensus 166 ~g~lVyvn~G~~eD~~~L~~~gv~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~~dp~d~~~~~v~rg~v~~~~Gd 245 (482)
.+.+.+.+...+-|=.- -....++||++++-+|++. +-+|++.|+..||.|++++++..|+..
T Consensus 72 ~a~~~~~a~~~pld~cs--~~~~kl~~~~~~v~RGnC~-Ft~Ka~~Aq~aGAsaLliin~~~d~~~-------------- 134 (541)
T KOG2442|consen 72 AADIPHLAQVDPLDSCS--TLQSKLSGKVALVFRGNCS-FTEKAKLAQAAGASALLIINNKKDLLF-------------- 134 (541)
T ss_pred ccccchhhhcCCccccC--CCCccccceeEEEecccce-eehhhhhhhhcCceEEEEEcCchhhcc--------------
Confidence 34455555555444110 0124689999999999998 899999999999999999999765421
Q ss_pred CCCCCCCCCCCCccccccccccccCCCCCceeecCHHHHHHHHHhcC
Q 011575 246 PLSPGWAGVEGGESLDLEDSEVSKRFPKIPSLPLSFENAQIILGSLW 292 (482)
Q Consensus 246 p~tP~~~s~~~~~r~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 292 (482)
.|..+ +.. ...-+||++.|+++++..|.+...
T Consensus 135 --~~~~~------~~~-------~~dv~IPv~mi~~~~~~~l~~~~~ 166 (541)
T KOG2442|consen 135 --MPCGN------KET-------SLDVTIPVAMISYSDGRDLNKSTR 166 (541)
T ss_pred --CCCCC------CCc-------cccccceEEEEEhhhHHHHHhhhc
Confidence 11111 111 123479999999999999997653
No 100
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=96.07 E-value=0.025 Score=59.18 Aligned_cols=76 Identities=24% Similarity=0.235 Sum_probs=57.6
Q ss_pred eEEEEEEcCCCCCCcEEEEeecCCCCC-----------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCC
Q 011575 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (482)
Q Consensus 332 ~Nvig~i~G~~~~d~~ViigaH~Ds~~-----------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p 388 (482)
.|+++.+ |.. .+.|++.+|+|... .|+.|.-.|++++|.+++.|.+ .++.+
T Consensus 57 ~~v~~~~-g~~--~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~---~~~~~ 130 (395)
T TIGR03526 57 GNVLGYI-GHG--PKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKD---LGLLD 130 (395)
T ss_pred CcEEEEe-CCC--CCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHH---cCCCC
Confidence 5899988 542 36799999999632 2889999999999999998864 35567
Q ss_pred CCcEEEEEeCCCcC-CCccHHHHHHH
Q 011575 389 RRTIIFCSWDAEEF-GMIGSTEWVEE 413 (482)
Q Consensus 389 ~rtI~f~~~~~eE~-gl~GS~~~~~~ 413 (482)
++++.|++..+||. +-.|+..++++
T Consensus 131 ~~~v~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03526 131 DYTLLVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred CceEEEEEecccccCCcHhHHHHHhc
Confidence 77899988888983 34566666654
No 101
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=96.04 E-value=0.019 Score=58.99 Aligned_cols=46 Identities=11% Similarity=0.383 Sum_probs=39.7
Q ss_pred HHHHHHHHhcc--CCCCCCChhhHHHHHHHHHHHHHCCCeeeeeeeEE
Q 011575 70 TVSSYLRDLTH--HPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEYKA 115 (482)
Q Consensus 70 ~i~~~L~~Ls~--~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~~y~v 115 (482)
-..++++.++. .+|.+||+++.++++||+++|+++|++++.++|..
T Consensus 32 ~a~~~~~~ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG~~v~~q~f~~ 79 (346)
T PRK10199 32 FANTQARHIATFFPGRMTGSPAEMLSADYLRQQFQQMGYQSDIRTFNS 79 (346)
T ss_pred hHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHCCCceEeeeccc
Confidence 45567788887 49999999999999999999999999998777664
No 102
>PLN02280 IAA-amino acid hydrolase
Probab=96.01 E-value=0.03 Score=60.31 Aligned_cols=77 Identities=21% Similarity=0.173 Sum_probs=58.0
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCCCC-----------------CCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEE
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWTYG-----------------AIDPNSGTAALLDIARRYALLMRLGWSPRRTII 393 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~~G-----------------A~D~~sG~a~llelar~l~~~~~~g~~p~rtI~ 393 (482)
..|+++.+ |.. +++.|++-+|+|....+ -.-+ .++|++|.+++.|++. +.+++-+|+
T Consensus 140 ~~~vva~~-g~~-~~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd-~~~A~~l~a~~~L~~~---~~~~~g~V~ 213 (478)
T PLN02280 140 KTGIRAWI-GTG-GPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHD-AHVAMLLGAAKILKSR---EHLLKGTVV 213 (478)
T ss_pred CCEEEEEE-CCC-CCCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCc-HHHHHHHHHHHHHHhc---cccCCceEE
Confidence 46999998 543 24789999999987531 1122 3889999999998753 224567999
Q ss_pred EEEeCCCcCCCccHHHHHHHh
Q 011575 394 FCSWDAEEFGMIGSTEWVEEN 414 (482)
Q Consensus 394 f~~~~~eE~gl~GS~~~~~~~ 414 (482)
|++-.+||.|. |+...+++-
T Consensus 214 ~if~pdEE~g~-Ga~~li~~g 233 (478)
T PLN02280 214 LLFQPAEEAGN-GAKRMIGDG 233 (478)
T ss_pred EEecccccccc-hHHHHHHCC
Confidence 99999999974 999888763
No 103
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=95.86 E-value=0.037 Score=57.63 Aligned_cols=99 Identities=27% Similarity=0.308 Sum_probs=75.6
Q ss_pred eeEeEEEEEEcCCCCCCcEEEEeecCCCCC--------------------------------------------CCCCCC
Q 011575 329 ATIHNVFAVIRGLEEPNRYVLLGNHRDAWT--------------------------------------------YGAIDP 364 (482)
Q Consensus 329 ~~~~Nvig~i~G~~~~d~~ViigaH~Ds~~--------------------------------------------~GA~D~ 364 (482)
..-.||+|-|+|. ++.+.||+.+|+|.+. .|+.|=
T Consensus 63 ygR~nv~AlVrg~-~~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DM 141 (553)
T COG4187 63 YGRRNVFALVRGG-TSKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDM 141 (553)
T ss_pred cccceeEEEEecC-CCCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhh
Confidence 3558999999995 4689999999999643 289999
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhh---hcccccEEEEEEecccc
Q 011575 365 NSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENL---VNLGAKAVAYLNVDCAV 432 (482)
Q Consensus 365 ~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~GS~~~~~~~~---~~~~~~~~a~inlD~~~ 432 (482)
-||.|+-|.+-..|+.-. .-.-+|.|+....||...-|..+-+.+.. ++..-...+.||+|.+.
T Consensus 142 KsGlav~la~L~~fa~~~----~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~ 208 (553)
T COG4187 142 KSGLAVHLACLEEFAART----DRQGNLLFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTS 208 (553)
T ss_pred hhhhHHHHHHHHHHhhCC----CCCCcEEEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEecccccc
Confidence 999999888877776421 23458999999999998888777665433 23334578899999864
No 104
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=95.59 E-value=0.048 Score=57.02 Aligned_cols=76 Identities=24% Similarity=0.225 Sum_probs=56.5
Q ss_pred eEEEEEEcCCCCCCcEEEEeecCCCCC-----------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCC
Q 011575 332 HNVFAVIRGLEEPNRYVLLGNHRDAWT-----------------------YGAIDPNSGTAALLDIARRYALLMRLGWSP 388 (482)
Q Consensus 332 ~Nvig~i~G~~~~d~~ViigaH~Ds~~-----------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p 388 (482)
.|+++.+ |.. .+.|++.+|+|... .|+.|.-.|+|++|.+++.|.+ .|..+
T Consensus 57 ~n~~~~~-g~~--~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~---~g~~~ 130 (395)
T TIGR03320 57 GNVLGYI-GHG--PKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKD---LGLLD 130 (395)
T ss_pred CCEEEEe-CCC--CcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHH---cCCCC
Confidence 5899988 532 36799999999632 3899999999999999998854 35567
Q ss_pred CCcEEEEEeCCCcCC-CccHHHHHHH
Q 011575 389 RRTIIFCSWDAEEFG-MIGSTEWVEE 413 (482)
Q Consensus 389 ~rtI~f~~~~~eE~g-l~GS~~~~~~ 413 (482)
+.+|.|++..+||.+ -.|+..++++
T Consensus 131 ~~~i~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03320 131 DYTLLVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred CceEEEEecccccccCchHHHHHHHh
Confidence 789999988888864 2344555543
No 105
>PRK08737 acetylornithine deacetylase; Provisional
Probab=95.52 E-value=0.049 Score=56.57 Aligned_cols=69 Identities=25% Similarity=0.244 Sum_probs=54.6
Q ss_pred EeEEEEEEcCCCCCCcEEEEeecCCCCC---------------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCC
Q 011575 331 IHNVFAVIRGLEEPNRYVLLGNHRDAWT---------------------YGAIDPNSGTAALLDIARRYALLMRLGWSPR 389 (482)
Q Consensus 331 ~~Nvig~i~G~~~~d~~ViigaH~Ds~~---------------------~GA~D~~sG~a~llelar~l~~~~~~g~~p~ 389 (482)
..|+++. +|. +.|++.+|+|... .|+.|--+|+|++|.+++. +.
T Consensus 54 ~~nli~~-~g~----~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~----------~~ 118 (364)
T PRK08737 54 AVSLYAV-RGT----PKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA----------GD 118 (364)
T ss_pred ceEEEEE-cCC----CeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc----------cC
Confidence 4688886 453 3599999999743 1899998899999988763 24
Q ss_pred CcEEEEEeCCCcCCC-ccHHHHHHHh
Q 011575 390 RTIIFCSWDAEEFGM-IGSTEWVEEN 414 (482)
Q Consensus 390 rtI~f~~~~~eE~gl-~GS~~~~~~~ 414 (482)
.+|.|++...||.|. .|+..+++..
T Consensus 119 ~~v~~~~~~dEE~g~~~g~~~~~~~~ 144 (364)
T PRK08737 119 GDAAFLFSSDEEANDPRCVAAFLARG 144 (364)
T ss_pred CCEEEEEEcccccCchhhHHHHHHhC
Confidence 589999999999987 6888888764
No 106
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=95.39 E-value=0.038 Score=56.87 Aligned_cols=106 Identities=22% Similarity=0.233 Sum_probs=74.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEecccccCCc----
Q 011575 361 AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQGPG---- 436 (482)
Q Consensus 361 A~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~~g~~---- 436 (482)
|.||-.|+++|||++|.|+ +-.+..+++|++..-||.|+.|+.....+.... ..|-+|....+..
T Consensus 178 alDdR~gva~lle~lk~l~-----~~~~~~~vy~v~tvqEEVGlrGA~~~a~~i~pd------~aiavd~~~~~d~~~~~ 246 (355)
T COG1363 178 ALDDRAGVAALLELLKELK-----GIELPADVYFVASVQEEVGLRGAKTSAFRIKPD------IAIAVDVTPAGDTPGVP 246 (355)
T ss_pred eccchHhHHHHHHHHHHhc-----cCCCCceEEEEEecchhhccchhhccccccCCC------EEEEEecccccCCCCCc
Confidence 5689999999999999993 125788999999999999999998766654332 2466777655522
Q ss_pred -----------cc-----cccCHhHHHHHHHHHhhCCCCC-----CCCcccccccccc--CcCC
Q 011575 437 -----------FF-----AGATPQLDDILIEVTKMVKDPE-----SESGTLYDQWSAP--NRIF 477 (482)
Q Consensus 437 -----------~~-----~~~sP~l~~~~~~~~~~v~~p~-----~~~~s~~~~~~~~--~~p~ 477 (482)
+. ....|.|.+.+.+++++-.-|- +.++||-...... |+|+
T Consensus 247 ~~~~~lg~Gp~i~~~D~~~~~~~~l~~~L~~~A~~~~Ip~Q~~v~~~ggTDA~a~~~~g~gvpt 310 (355)
T COG1363 247 KGDVKLGKGPVIRVKDASGIYHPKLRKFLLELAEKNNIPYQVDVSPGGGTDAGAAHLTGGGVPT 310 (355)
T ss_pred ccccccCCCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCeEEEecCCCCccHHHHHHcCCCCce
Confidence 11 1236889999999998754432 2356776655444 3554
No 107
>PRK09864 putative peptidase; Provisional
Probab=95.27 E-value=0.063 Score=55.54 Aligned_cols=104 Identities=21% Similarity=0.196 Sum_probs=70.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEeccccc-------
Q 011575 361 AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQ------- 433 (482)
Q Consensus 361 A~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~~------- 433 (482)
|.||-.|+++|+|++|.+++ ++.+++|++..-||.|+.|+..-+..... .+ .|-+|+...
T Consensus 173 alDnR~g~~~lle~l~~l~~-------~~~~vy~v~TvQEEvGlrGA~~aa~~i~P----Di--aIavDvt~~~d~p~~~ 239 (356)
T PRK09864 173 ALDNRIGCAMMAELLQTVNN-------PEITLYGVGSVEEEVGLRGAQTSAEHIKP----DV--VIVLDTAVAGDVPGID 239 (356)
T ss_pred eCccHHHHHHHHHHHHHhhc-------CCCeEEEEEEcchhcchHHHHHHHhcCCC----CE--EEEEecccCCCCCCCc
Confidence 56899999999999998842 67899999999999999999875554333 23 455775432
Q ss_pred ----------CCcc-----ccccCHhHHHHHHHHHhhCCCCC-----CCCccccccc--cccCcCC
Q 011575 434 ----------GPGF-----FAGATPQLDDILIEVTKMVKDPE-----SESGTLYDQW--SAPNRIF 477 (482)
Q Consensus 434 ----------g~~~-----~~~~sP~l~~~~~~~~~~v~~p~-----~~~~s~~~~~--~~~~~p~ 477 (482)
|..+ ..-.+|.|.+.+.+++++..-|- ..++||-+.. ...|+|+
T Consensus 240 ~~~~~~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~i~~~~~Gvpt 305 (356)
T PRK09864 240 NIKYPLKLGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQFSTMKTGATDGGRYNVMGGGRPV 305 (356)
T ss_pred ccccccccCCCCeEEEccCCccCCHHHHHHHHHHHHHcCCCceEEEcCCCCchHHHHHHhCCCCcE
Confidence 2222 22357899999999999854332 1245555543 3346664
No 108
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=94.65 E-value=0.18 Score=54.64 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=71.6
Q ss_pred eEeEEEEEEcCCC-CCCcEEEEeecCCCCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCccHH
Q 011575 330 TIHNVFAVIRGLE-EPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGST 408 (482)
Q Consensus 330 ~~~Nvig~i~G~~-~~d~~ViigaH~Ds~~~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~GS~ 408 (482)
...||+|.++..+ ...|.||+.+.++.... .-|..|++.+|.++|.|++. .-| -|.|+|++.+. +..|.+
T Consensus 2 ~G~nvy~i~rapR~d~tEaivl~~~~~~~~~--~~n~~~v~l~lal~~~~~~~--~~w--sKDii~l~~~~---~~~g~~ 72 (504)
T PF04114_consen 2 SGTNVYGILRAPRGDGTEAIVLVVPWRDSDG--EYNAGGVALALALARYFRRQ--SYW--SKDIIFLFTDD---ELAGMQ 72 (504)
T ss_pred CceEEEEEEecCCCCCceeEEEEEecCCCCc--ccchhhHHHHHHHHHHhhhc--hhh--hccEEEEecCC---cchHHH
Confidence 3579999998543 34588999999876553 45688999999999999853 235 68999998764 468999
Q ss_pred HHHHHhhhc---------c---cccEEEEEEecccccC
Q 011575 409 EWVEENLVN---------L---GAKAVAYLNVDCAVQG 434 (482)
Q Consensus 409 ~~~~~~~~~---------~---~~~~~a~inlD~~~~g 434 (482)
.|+++|-.. + ...+.+.||+|.....
T Consensus 73 awl~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~ 110 (504)
T PF04114_consen 73 AWLEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDS 110 (504)
T ss_pred HHHHHHhCCCCccccccCCCCCCcceeEEEEEEecCCC
Confidence 999987543 1 1257788999987654
No 109
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.07 Score=56.46 Aligned_cols=96 Identities=19% Similarity=0.241 Sum_probs=70.2
Q ss_pred eeEeEEEEEEcCC-----CCC-CcEEEEeecCCCCC------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 011575 329 ATIHNVFAVIRGL-----EEP-NRYVLLGNHRDAWT------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCS 396 (482)
Q Consensus 329 ~~~~Nvig~i~G~-----~~~-d~~ViigaH~Ds~~------~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~ 396 (482)
...+||....+.. .++ +++||..+.+|+.. .||.-.-++...+|..||+|++.+.- -..+|++.|++
T Consensus 155 l~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~r~pai-~nl~rnV~f~~ 233 (596)
T KOG2657|consen 155 LHSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALKRQPAI-NNLNRNVFFAF 233 (596)
T ss_pred cCCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhccCccc-ccccceeEEEE
Confidence 4556777766542 233 68999999999865 38877899999999999999653211 23579999999
Q ss_pred eCCCcCCCccHHHHHHHhhhcccccEEEEEE
Q 011575 397 WDAEEFGMIGSTEWVEENLVNLGAKAVAYLN 427 (482)
Q Consensus 397 ~~~eE~gl~GS~~~~~~~~~~~~~~~~a~in 427 (482)
|.||-++.+||..++-+.. .-+--++..|
T Consensus 234 f~get~~ylgS~r~~yeme--~gk~pva~~s 262 (596)
T KOG2657|consen 234 FNGETLDYLGSGRAAYEME--NGKFPVAIRS 262 (596)
T ss_pred eecceeeeccchhhhhHhh--cCCCCeeecc
Confidence 9999999999998776542 1233455555
No 110
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=93.98 E-value=0.19 Score=51.85 Aligned_cols=106 Identities=16% Similarity=0.045 Sum_probs=67.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEeccccc-------
Q 011575 361 AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNVDCAVQ------- 433 (482)
Q Consensus 361 A~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inlD~~~~------- 433 (482)
+.|+-+|+++++++++.|.+ .+++++++|.|++...||.| .|+..-+ ...+..+|.+|+...
T Consensus 181 ~~D~K~G~a~~l~~~~~l~~---~~~~~~~~v~~~~t~qEEvG-~gaa~~i-------~pd~a~~i~vd~~~~~p~~~~l 249 (343)
T TIGR03106 181 HLDDKAGVAALLAALKAIVE---HKVPLPVDVHPLFTITEEVG-SGASHAL-------PPDVAELVSVDNGTVAPGQNSS 249 (343)
T ss_pred ecccHHhHHHHHHHHHHHHh---cCCCCCceEEEEEECCcccC-ccchhcc-------cHhhhccEEEEecccCCCCCcC
Confidence 36899999999999999864 35678899999999999999 5632211 122333455664321
Q ss_pred --CCccc-----cccCHhHHHHHHHHHhhCCCCCC-----CCccccccccc--cCcCC
Q 011575 434 --GPGFF-----AGATPQLDDILIEVTKMVKDPES-----ESGTLYDQWSA--PNRIF 477 (482)
Q Consensus 434 --g~~~~-----~~~sP~l~~~~~~~~~~v~~p~~-----~~~s~~~~~~~--~~~p~ 477 (482)
|..+. .-.+|.|.+.+.+++++..-|-. .++||-..... .|+|+
T Consensus 250 g~Gp~i~~~d~~~~~~~~l~~~l~~~A~~~~Ip~Q~~~~~~~gtDa~~~~~~~~Gi~t 307 (343)
T TIGR03106 250 EHGVTIAMADSSGPFDYHLTRKLIRLCQDHGIPHRRDVFRYYRSDAASAVEAGHDIRT 307 (343)
T ss_pred CCCceEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEecCCCCChHHHHHHcCCCCCE
Confidence 22221 12568999999999998654422 23455544333 35664
No 111
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=93.65 E-value=0.27 Score=50.95 Aligned_cols=78 Identities=23% Similarity=0.328 Sum_probs=64.1
Q ss_pred EEcCCCCCCcEEEEeecCCC--------CC---------------CCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEE
Q 011575 337 VIRGLEEPNRYVLLGNHRDA--------WT---------------YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTII 393 (482)
Q Consensus 337 ~i~G~~~~d~~ViigaH~Ds--------~~---------------~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~ 393 (482)
-..|+++..+.|++..|+|- |. .|+.|+-.-++..+++.++++++ |.....+|+
T Consensus 83 ~~~Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~---g~~lpvnv~ 159 (473)
T KOG2276|consen 83 GVLGSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQL---GIDLPVNVV 159 (473)
T ss_pred hcccCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHh---CccccceEE
Confidence 33488877889999999993 43 28999999999999999998765 556778999
Q ss_pred EEEeCCCcCCCccHHHHHHHhhhc
Q 011575 394 FCSWDAEEFGMIGSTEWVEENLVN 417 (482)
Q Consensus 394 f~~~~~eE~gl~GS~~~~~~~~~~ 417 (482)
||+=+-||.|..|-.+.++...+.
T Consensus 160 f~~EgmEEsgS~~L~~l~~~~kD~ 183 (473)
T KOG2276|consen 160 FVFEGMEESGSEGLDELIEKEKDK 183 (473)
T ss_pred EEEEechhccCccHHHHHHHHhhh
Confidence 999999999999988888765543
No 112
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=0.22 Score=50.93 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=53.6
Q ss_pred CCcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEEecCCccCCCcceecceeccCCCCCCCCCCCCCCCccccccccc
Q 011575 187 GVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLYAEWDRLRGGGVERGTVMRGVGDPLSPGWAGVEGGESLDLEDSE 266 (482)
Q Consensus 187 gv~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~~dp~d~~~~~v~rg~v~~~~Gdp~tP~~~s~~~~~r~~~~~~~ 266 (482)
+..-...++|++.|++. +.+|+.+|++.|++|+|+|+++.+.. -+ .+.+-
T Consensus 75 ~~~~~~~laLI~Rg~Cs-Fe~Kv~~AQ~aGfkaaIVynn~~~~~--lv-------------~~~~~-------------- 124 (348)
T KOG4628|consen 75 STRSTSFLALIRRGGCS-FEDKVLNAQRAGFKAAIVYNNVGSED--LV-------------AMASN-------------- 124 (348)
T ss_pred CCCCcceEEEEEccCCc-hHHHHhhcccccCceEEEecCCCCch--he-------------eeccC--------------
Confidence 34567789999999997 89999999999999999999874321 11 11110
Q ss_pred cccCCCCCceeecCHHHHHHHHHhc
Q 011575 267 VSKRFPKIPSLPLSFENAQIILGSL 291 (482)
Q Consensus 267 ~~~~~p~IP~~~Is~~~a~~Ll~~l 291 (482)
...-.|+++-++...++.|.+..
T Consensus 125 --~~~v~i~~~~vs~~~ge~l~~~~ 147 (348)
T KOG4628|consen 125 --PSKVDIHIVFVSVFSGELLSSYA 147 (348)
T ss_pred --CccceeEEEEEeeehHHHHHHhh
Confidence 01235889999999999888743
No 113
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=89.34 E-value=0.39 Score=43.27 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=32.9
Q ss_pred CCcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEE
Q 011575 187 GVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLY 223 (482)
Q Consensus 187 gv~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~ 223 (482)
++.+.|.|+|+..|++. +-.|..+++++||.++|+-
T Consensus 83 ~~f~~d~vaL~eRGeCS-Fl~Ktl~~e~aGa~aiiit 118 (193)
T KOG3920|consen 83 EIFAPDSVALMERGECS-FLVKTLNGEKAGATAIIIT 118 (193)
T ss_pred cccCCCcEEEEecCCce-eeehhhhhhhcCceEEEEe
Confidence 78999999999999998 9999999999999977753
No 114
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=88.89 E-value=2.1 Score=44.95 Aligned_cols=78 Identities=28% Similarity=0.271 Sum_probs=59.4
Q ss_pred eEEEEEEcCCCCCCcEEEEeecCCCCCC-------------C---CCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEE
Q 011575 332 HNVFAVIRGLEEPNRYVLLGNHRDAWTY-------------G---AIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFC 395 (482)
Q Consensus 332 ~Nvig~i~G~~~~d~~ViigaH~Ds~~~-------------G---A~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~ 395 (482)
.=|+|.++|.. +.+.|-|-|-+|..+. | |.=--.-++++|.+|+.|+++++ ...-+|+|+
T Consensus 57 TGvva~~~~g~-~g~tIalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD~Hta~lLgaA~~L~~~~~---~~~Gtv~~i 132 (392)
T COG1473 57 TGVVATLKGGK-PGPTIALRADMDALPIQEETGLPFASKNPGVMHACGHDGHTAILLGAALALAEHKD---NLPGTVRLI 132 (392)
T ss_pred eEEEEEEcCCC-CCCEEEEEeecccCccccccCCCcccCCCCCcccCCchHHHHHHHHHHHHHHhhhh---hCCcEEEEE
Confidence 45789998764 4459999999998762 3 11111237999999999998753 467899999
Q ss_pred EeCCCcCCCccHHHHHHHh
Q 011575 396 SWDAEEFGMIGSTEWVEEN 414 (482)
Q Consensus 396 ~~~~eE~gl~GS~~~~~~~ 414 (482)
+-.|||.+- |+...+++-
T Consensus 133 fQPAEE~~~-Ga~~mi~~G 150 (392)
T COG1473 133 FQPAEEGGG-GAKAMIEDG 150 (392)
T ss_pred ecccccccc-cHHHHHhcC
Confidence 999999876 998888864
No 115
>PRK02256 putative aminopeptidase 1; Provisional
Probab=83.18 E-value=1.4 Score=47.26 Aligned_cols=55 Identities=22% Similarity=0.177 Sum_probs=41.7
Q ss_pred EEEeecCCCCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCccHHH
Q 011575 348 VLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTE 409 (482)
Q Consensus 348 ViigaH~Ds~~~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~GS~~ 409 (482)
-++|.+.+=....+.||-.|+.+++|+.+.+. .+..++++++|+-||.|+.|++.
T Consensus 245 ~~~G~~~efI~s~rLDNr~~~~~~leal~~~~-------~~~~~~~~~~~dqEEVGs~ga~g 299 (462)
T PRK02256 245 RDVGLDRSLIGAYGQDDRVCAYTSLEALLELE-------NPEKTAVVLLVDKEEIGSEGNTG 299 (462)
T ss_pred ceeccccceeeccccccHHHHHHHHHHHHhcc-------cCCCeEEEEEEcccccCCcchhh
Confidence 34455555445578999999999999987652 35678999999999999876543
No 116
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=82.36 E-value=6.6 Score=39.08 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=43.4
Q ss_pred HHHHcccChHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeeeeeeeEE
Q 011575 60 KTFLSLSSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEYKA 115 (482)
Q Consensus 60 ~~~l~~~~~~~i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~~y~v 115 (482)
+.+-...+..+++++|.-+- .+|..||+|..++-+||.+.|++.|+.++.+.|.-
T Consensus 42 r~i~~~s~~~~~~~~L~p~l-v~Rvpgs~g~~~vr~~i~~~l~~l~w~ve~~~f~~ 96 (338)
T KOG3946|consen 42 RAINPDSDWNRLWENLLPIL-VPRVPGSPGSRQVRRFIIQHLRNLGWAVETDAFTD 96 (338)
T ss_pred HHhcCCCCHHHHHHhhhhhh-ccccCCCCccHHHHHHHHHHHHhcCceeeeccccc
Confidence 34555566677777754442 58999999999999999999999999988777653
No 117
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=81.79 E-value=4.8 Score=43.70 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=59.5
Q ss_pred eeeeEeEEEEEEcCCC-CCCcEEEEeecCCCCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCc
Q 011575 327 KVATIHNVFAVIRGLE-EPNRYVLLGNHRDAWTYGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMI 405 (482)
Q Consensus 327 ~~~~~~Nvig~i~G~~-~~d~~ViigaH~Ds~~~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~ 405 (482)
++....||+|.+++-+ ...|-+|+...++.-..+ |-.|++.++.+++.++.- .-| .+.|+|++.++ -..
T Consensus 116 e~y~G~NvyGilRAPRgdgtEsivl~vP~~~~~~~---~~~~v~l~lsla~~f~r~--~yW--sKDII~v~~d~---~~~ 185 (617)
T KOG3566|consen 116 EEYSGENVYGILRAPRGDGTESIVLVVPYGRSSGS---NSASVALLLSLADYFSRW--VYW--SKDIIFVFTDG---PAL 185 (617)
T ss_pred hhcCCceEEEEEecCCCCCcceEEEEEecccCCCc---chhHHHHHHHHHHHhcCC--eee--cccEEEEEeCC---ccc
Confidence 3344799999998753 345789999988865433 366889999999988642 124 67999999987 457
Q ss_pred cHHHHHHHhhh
Q 011575 406 GSTEWVEENLV 416 (482)
Q Consensus 406 GS~~~~~~~~~ 416 (482)
|-..|++.+.+
T Consensus 186 g~~AwLeaYhd 196 (617)
T KOG3566|consen 186 GLDAWLEAYHD 196 (617)
T ss_pred cHHHHHHHhhc
Confidence 77889998765
No 118
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=81.04 E-value=2.6 Score=44.16 Aligned_cols=45 Identities=13% Similarity=0.080 Sum_probs=37.3
Q ss_pred ChHHHHHHHHHhccCC--------CCCCChhhHHHHHHHHHHHHHCCCeeeee
Q 011575 67 SNYTVSSYLRDLTHHP--------HLAGTEPSLDTVRYVQSHFEQLKFNTHTV 111 (482)
Q Consensus 67 ~~~~i~~~L~~Ls~~~--------r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (482)
+.+++.++|+.|.+.+ |.++|.++.++++||++.|+++|++++.+
T Consensus 8 ~~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~~ 60 (412)
T PRK12893 8 NGERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSVD 60 (412)
T ss_pred CHHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEEc
Confidence 4567788888888743 67788889999999999999999998653
No 119
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=77.71 E-value=6.6 Score=44.74 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=36.1
Q ss_pred cccChHHHHHHHHHhcc-CCCCCCChhhH-HHHHHHHHHHHHCC
Q 011575 64 SLSSNYTVSSYLRDLTH-HPHLAGTEPSL-DTVRYVQSHFEQLK 105 (482)
Q Consensus 64 ~~~~~~~i~~~L~~Ls~-~~r~aGT~g~~-~~a~~i~~~~~~~G 105 (482)
++.+.++++.+|.+|++ +||+.|+..++ .+.+|+.++..+..
T Consensus 52 ~~f~~~rA~~~l~~ls~~G~~~~gS~~ne~~a~~~il~e~~~i~ 95 (834)
T KOG2194|consen 52 SQFSEARALKDLLSLSAAGPHPVGSDNNEMHASSFILKEVNKIR 95 (834)
T ss_pred hhhHHHHHHHHHHHHHhcCCcccCchhhHHHHHHHHHHHHHHHH
Confidence 34568899999999998 69999999998 89999999988743
No 120
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=75.03 E-value=5.9 Score=41.62 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhccCC-------CCCCChhhHHHHHHHHHHHHHCCCeeeee
Q 011575 68 NYTVSSYLRDLTHHP-------HLAGTEPSLDTVRYVQSHFEQLKFNTHTV 111 (482)
Q Consensus 68 ~~~i~~~L~~Ls~~~-------r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (482)
.+++.+++..|+.-+ |.+.|+++.++++||.+.|+++|++++..
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~ 58 (414)
T PRK12890 8 GERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGLEVRRD 58 (414)
T ss_pred HHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEc
Confidence 457888899998644 55789999999999999999999998654
No 121
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=74.69 E-value=5.4 Score=41.91 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=38.8
Q ss_pred cChHHHHHHHHHhccC-C-------CCCCChhhHHHHHHHHHHHHHCCCeeeee
Q 011575 66 SSNYTVSSYLRDLTHH-P-------HLAGTEPSLDTVRYVQSHFEQLKFNTHTV 111 (482)
Q Consensus 66 ~~~~~i~~~L~~Ls~~-~-------r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (482)
++.+++.++|+.|.+. + |.+.|.++.++++||++.|+++|++++.+
T Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~~ 57 (413)
T PRK09290 4 IDAERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRVD 57 (413)
T ss_pred cCHHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEEc
Confidence 4567888899998875 4 66888889999999999999999998654
No 122
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=74.22 E-value=5.6 Score=41.91 Aligned_cols=44 Identities=9% Similarity=-0.008 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcc---C-----CCCCCChhhHHHHHHHHHHHHHCCCeeeeee
Q 011575 69 YTVSSYLRDLTH---H-----PHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (482)
Q Consensus 69 ~~i~~~L~~Ls~---~-----~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (482)
.++++.++.|++ . .|.+.|+++.++++||.+.|++.|++++.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G~~v~~~~ 61 (414)
T PRK12891 10 ERLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAGCTVRVDA 61 (414)
T ss_pred HHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 467777777775 2 4899999999999999999999999987643
No 123
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=71.01 E-value=8.8 Score=41.55 Aligned_cols=47 Identities=11% Similarity=0.103 Sum_probs=39.4
Q ss_pred ccChHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeeeeeee
Q 011575 65 LSSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEY 113 (482)
Q Consensus 65 ~~~~~~i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~~y 113 (482)
.+....+.+.|+.|++.|+.+|. +.++++|+.+.+++.|++++.++.
T Consensus 6 ~~~~~~~~~~l~~Lv~ips~S~~--e~~~~~~l~~~~~~~G~~~~~d~~ 52 (485)
T PRK15026 6 QLSPQPLWDIFAKICSIPHPSYH--EEQLAEYIVGWAKEKGFHVERDQV 52 (485)
T ss_pred hcCHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHhCCCEEEEEec
Confidence 45567888999999999988776 459999999999999999876543
No 124
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=68.42 E-value=12 Score=40.31 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=32.8
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCccHHH
Q 011575 360 GAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTE 409 (482)
Q Consensus 360 GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~GS~~ 409 (482)
.+.||-.|+.++|++.+...... +-.+....++++|+-||.|+.|++.
T Consensus 248 ~rlDnr~~~~~~l~al~~~~~~~--~~~~~~~~v~~~~d~EEVGs~ga~G 295 (465)
T PTZ00371 248 PRLDNLGSSFCAFKALTEAVESL--GENSSNIRMVCLFDHEEVGSSSSQG 295 (465)
T ss_pred ecchhHHHHHHHHHHHHhccccc--cCCCCceEEEEEECCcCCCCCcchh
Confidence 56799999999999987653210 0014445555669999999877654
No 125
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=67.41 E-value=7.2 Score=41.06 Aligned_cols=44 Identities=9% Similarity=0.104 Sum_probs=36.6
Q ss_pred HHHHHHHHhcc---C-----CCCCCChhhHHHHHHHHHHHHHCCCeeeeeee
Q 011575 70 TVSSYLRDLTH---H-----PHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEY 113 (482)
Q Consensus 70 ~i~~~L~~Ls~---~-----~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~~y 113 (482)
++++.|+.|+. . .|++-|+.+.++.+|+.+.++++||+++.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~Gl~v~~D~~ 55 (406)
T TIGR03176 4 HFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESGLETRFDDV 55 (406)
T ss_pred HHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCEEEEcCC
Confidence 56666777765 1 58999999999999999999999999887665
No 126
>PLN02693 IAA-amino acid hydrolase
Probab=64.83 E-value=27 Score=37.27 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=38.1
Q ss_pred HHHHHHHHcccCh----HHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeee
Q 011575 56 LHFQKTFLSLSSN----YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTH 109 (482)
Q Consensus 56 ~~~~~~~l~~~~~----~~i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~ 109 (482)
.+++..+++..+. +.+.+..++|-+.|=+++. +.++++||.+.|+++|+++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~r~~lh~~PE~s~~--E~~ta~~i~~~L~~~G~~~~ 85 (437)
T PLN02693 30 SQIQINLLELAKSPEVFDWMVRIRRKIHENPELGYE--EFETSKLIRSELDLIGIKYR 85 (437)
T ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHhCCCCCCc--hHHHHHHHHHHHHHCCCeeE
Confidence 3445444432222 3466777888888888887 68999999999999999864
No 127
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=62.01 E-value=10 Score=42.05 Aligned_cols=52 Identities=10% Similarity=0.141 Sum_probs=41.4
Q ss_pred HHHHHHHHHhccC-----------CCCCCChhhHHHHHHHHHHHHHCCCe-eeeeee-EEEEeee
Q 011575 69 YTVSSYLRDLTHH-----------PHLAGTEPSLDTVRYVQSHFEQLKFN-THTVEY-KALLSYP 120 (482)
Q Consensus 69 ~~i~~~L~~Ls~~-----------~r~aGT~g~~~~a~~i~~~~~~~Gl~-~~~~~y-~v~~~~p 120 (482)
+++++.|+.|+.. .|++-|+.+.++++|+.+.|+++||+ ++.+.. .++..+|
T Consensus 181 ~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~D~~gNv~~~~~ 245 (591)
T PRK13799 181 ADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEIDAVGNVVGRYK 245 (591)
T ss_pred HHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeECCCCCEEEEcC
Confidence 5677888888863 27888999999999999999999998 988765 3444444
No 128
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=61.41 E-value=38 Score=35.55 Aligned_cols=44 Identities=9% Similarity=0.061 Sum_probs=34.8
Q ss_pred HHHHHHHHHhccCCCCCCCh-hhHHHHHHHHHHHHHCCCeeeeee
Q 011575 69 YTVSSYLRDLTHHPHLAGTE-PSLDTVRYVQSHFEQLKFNTHTVE 112 (482)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGT~-g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (482)
+.+.+.|+.|.+.+-.++.+ +..++++||++.|+++|++++.++
T Consensus 37 ~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~ 81 (410)
T PRK06133 37 PAYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAP 81 (410)
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence 46778888888877776653 446899999999999999986544
No 129
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=61.38 E-value=11 Score=39.40 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=33.0
Q ss_pred HHHHHHHhcc---C-----CCCCCChhhHHHHHHHHHHHHHCCCeeeeee
Q 011575 71 VSSYLRDLTH---H-----PHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (482)
Q Consensus 71 i~~~L~~Ls~---~-----~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (482)
+++.|+.+++ . .|++-|+.+.++++||++.|+++|++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~~~~~G~~~~~~~ 52 (401)
T TIGR01879 3 LWETLMWLGEVGADPAGGMTRLALSPEDREAQDLFKKRMRAAGLEVRFDE 52 (401)
T ss_pred HHHHHHHHhcccCCCCCceEeCCCCHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 4455555554 2 4788899999999999999999999987654
No 130
>PRK06915 acetylornithine deacetylase; Validated
Probab=58.55 E-value=20 Score=37.69 Aligned_cols=53 Identities=11% Similarity=0.185 Sum_probs=38.7
Q ss_pred HHHHHHHcccCh--HHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeeeee
Q 011575 57 HFQKTFLSLSSN--YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTV 111 (482)
Q Consensus 57 ~~~~~~l~~~~~--~~i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (482)
++++.+++.++. +++.+.|++|-+.|=.+|. +.++++||++.|+++|++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~lv~ips~s~~--e~~~~~~l~~~l~~~G~~~~~~ 57 (422)
T PRK06915 3 QLKKQICDYIESHEEEAVKLLKRLIQEKSVSGD--ESGAQAIVIEKLRELGLDLDIW 57 (422)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhCCCCCcc--hHHHHHHHHHHHHhcCCeeEEe
Confidence 455566654443 4567788888887766543 6899999999999999987543
No 131
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=54.50 E-value=25 Score=36.81 Aligned_cols=45 Identities=11% Similarity=0.052 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHhccC-------CCCCCChhhHHHHHHHHHHHHHCCCeeeee
Q 011575 67 SNYTVSSYLRDLTHH-------PHLAGTEPSLDTVRYVQSHFEQLKFNTHTV 111 (482)
Q Consensus 67 ~~~~i~~~L~~Ls~~-------~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (482)
+.+++.+.|+.|++. .|.+-++++.++++||.+.|+++|++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~ 59 (412)
T PRK12892 8 DGQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRID 59 (412)
T ss_pred cHHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEEc
Confidence 344677777777763 246667888999999999999999998654
No 132
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=51.77 E-value=25 Score=37.82 Aligned_cols=43 Identities=12% Similarity=0.273 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeeeeee
Q 011575 68 NYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (482)
Q Consensus 68 ~~~i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (482)
.+++.+.|+.|.+.++.+ ..+.++++|+.+.|+++|++++.++
T Consensus 3 ~~~~~~~l~~l~~i~s~s--~~e~~~~~~l~~~l~~~G~~~~~~~ 45 (477)
T TIGR01893 3 PSRVFKYFEEISKIPRPS--KNEKEVSNFIVNWAKKLGLEVKQDE 45 (477)
T ss_pred HHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHHHHHcCCeEEEeC
Confidence 457778899999988764 4578899999999999999986654
No 133
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=51.54 E-value=24 Score=39.14 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhccC-----------CCCCCChhhHHHHHHHHHHHHHCCC-eeeeeee
Q 011575 68 NYTVSSYLRDLTHH-----------PHLAGTEPSLDTVRYVQSHFEQLKF-NTHTVEY 113 (482)
Q Consensus 68 ~~~i~~~L~~Ls~~-----------~r~aGT~g~~~~a~~i~~~~~~~Gl-~~~~~~y 113 (482)
.+++++.|+.|+.. .|++-|+++.++++|+.+.|+++|| +++.+..
T Consensus 180 ~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~~v~~D~~ 237 (591)
T PRK13590 180 GNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFDEVHIDAV 237 (591)
T ss_pred HHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCCeeeECCC
Confidence 46788888888872 2566799999999999999999999 7876654
No 134
>PRK08652 acetylornithine deacetylase; Provisional
Probab=50.00 E-value=31 Score=34.90 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=33.2
Q ss_pred HHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeeeeee
Q 011575 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (482)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (482)
+++.+.+++|-+.|=.+|. +.++++||.+.|+++|++++..+
T Consensus 2 ~~~~~~~~~lv~ips~s~~--e~~~~~~l~~~l~~~G~~v~~~~ 43 (347)
T PRK08652 2 ERAKELLKQLVKIPSPSGQ--EDEIALHIMEFLESLGYDVHIES 43 (347)
T ss_pred hhHHHHHHHHhcCCCCCCc--hHHHHHHHHHHHHHcCCEEEEEe
Confidence 4566788888887766664 57899999999999999976544
No 135
>PRK02813 putative aminopeptidase 2; Provisional
Probab=45.33 E-value=25 Score=37.46 Aligned_cols=42 Identities=29% Similarity=0.334 Sum_probs=34.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCc---cHH
Q 011575 359 YGAIDPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMI---GST 408 (482)
Q Consensus 359 ~GA~D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~---GS~ 408 (482)
.++.||-.|+.++|++.+.+. ++.++++++|+-||.|+. |+.
T Consensus 230 s~~lDnr~~~~~~l~al~~~~--------~~~~~~~~~~d~EEVGs~~~~GA~ 274 (428)
T PRK02813 230 SGRLDNLSSCHAGLEALLAAA--------SDATNVLAAFDHEEVGSATKQGAD 274 (428)
T ss_pred EecchhHHHHHHHHHHHHhcC--------CCCeEEEEEEecCccCCCCCcccC
Confidence 357899999999999876542 157999999999999987 765
No 136
>PRK05111 acetylornithine deacetylase; Provisional
Probab=45.27 E-value=41 Score=34.64 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhccCCCCCCChh-----hHHHHHHHHHHHHHCCCeeeeee
Q 011575 68 NYTVSSYLRDLTHHPHLAGTEP-----SLDTVRYVQSHFEQLKFNTHTVE 112 (482)
Q Consensus 68 ~~~i~~~L~~Ls~~~r~aGT~g-----~~~~a~~i~~~~~~~Gl~~~~~~ 112 (482)
.+.+.+.|++|-+.|-.+|.+. +.++++||++.|+++|++++..+
T Consensus 4 ~~~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 53 (383)
T PRK05111 4 LPSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQP 53 (383)
T ss_pred chHHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEe
Confidence 3467778888888776666532 36799999999999999876544
No 137
>PRK08596 acetylornithine deacetylase; Validated
Probab=44.05 E-value=46 Score=35.02 Aligned_cols=44 Identities=11% Similarity=0.223 Sum_probs=33.7
Q ss_pred HHHHHHHHHhccCCCCCCCh-hhHHHHHHHHHHHHHCCCeeeeee
Q 011575 69 YTVSSYLRDLTHHPHLAGTE-PSLDTVRYVQSHFEQLKFNTHTVE 112 (482)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGT~-g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (482)
+.+.+.|+.|.+.|-.++.. ++.++++||++.|+++|++++.++
T Consensus 13 ~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~ 57 (421)
T PRK08596 13 DELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWD 57 (421)
T ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45677888888876655543 456889999999999999876544
No 138
>PRK07338 hypothetical protein; Provisional
Probab=43.53 E-value=53 Score=34.17 Aligned_cols=43 Identities=7% Similarity=-0.033 Sum_probs=30.3
Q ss_pred HHHHHHHHHhccCCCCCCC-hhhHHHHHHHHHHHHHCCCeeeee
Q 011575 69 YTVSSYLRDLTHHPHLAGT-EPSLDTVRYVQSHFEQLKFNTHTV 111 (482)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGT-~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (482)
+.+.+.|..|.+.+=.++. +|..++++||+++|+++|++++..
T Consensus 17 ~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~ 60 (402)
T PRK07338 17 APMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELI 60 (402)
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEe
Confidence 3455667777665534433 345689999999999999987644
No 139
>PRK09133 hypothetical protein; Provisional
Probab=38.88 E-value=54 Score=35.07 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=30.7
Q ss_pred HHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeee
Q 011575 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTH 109 (482)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~ 109 (482)
+.+.+.|+.|.+.+-..+..++.++++||.+.|+++|+++.
T Consensus 37 ~~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~ 77 (472)
T PRK09133 37 QAARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADA 77 (472)
T ss_pred HHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCce
Confidence 34556677777766555444577899999999999999863
No 140
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=37.73 E-value=61 Score=33.46 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=35.0
Q ss_pred HHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeeeeeeeE
Q 011575 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEYK 114 (482)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~~y~ 114 (482)
+.+.+.|+.|+.-+=.+|. +.+.++|+.+.|+++|++++.+.+-
T Consensus 3 ~~~~~lLk~Lv~~~s~SG~--E~~V~~~l~~~l~~~g~ev~~D~~G 46 (343)
T TIGR03106 3 DYLTETLLALLAIPSPTGF--TDAVVRYVAERLEDLGIEYELTRRG 46 (343)
T ss_pred HHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHHcCCeEEECCCe
Confidence 3466778899987766666 5689999999999999998766543
No 141
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=37.02 E-value=51 Score=33.61 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=31.5
Q ss_pred HHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeeeeee
Q 011575 71 VSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (482)
Q Consensus 71 i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (482)
+.+.|++|.+.|=.+|. +.++++||++.|+++|++++..+
T Consensus 2 ~~~~~~~l~~i~s~s~~--e~~~~~~l~~~l~~~g~~~~~~~ 41 (361)
T TIGR01883 2 LKKYFLELIQIDSESGK--EKAILTYLKKQITKLGIPVSLDE 41 (361)
T ss_pred hHHHHHHHeecCCCCCc--HHHHHHHHHHHHHHcCCEEEEec
Confidence 56678888876655554 67999999999999999876543
No 142
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=36.39 E-value=66 Score=33.19 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=31.2
Q ss_pred HHHHHHHHhccCCCCCCC---hhhHHHHHHHHHHHHHCCCe-eeee
Q 011575 70 TVSSYLRDLTHHPHLAGT---EPSLDTVRYVQSHFEQLKFN-THTV 111 (482)
Q Consensus 70 ~i~~~L~~Ls~~~r~aGT---~g~~~~a~~i~~~~~~~Gl~-~~~~ 111 (482)
.+.+.|++|.+.+=.+++ .++.++++||++.|+++|++ ++..
T Consensus 6 ~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~ 51 (400)
T PRK13983 6 EMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERY 51 (400)
T ss_pred HHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEE
Confidence 466778888775444443 35789999999999999998 7543
No 143
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=36.37 E-value=52 Score=33.87 Aligned_cols=39 Identities=21% Similarity=0.408 Sum_probs=28.5
Q ss_pred HHHHhccCCCCC-CChhhHHHHHHHHHHHHHCCCeeeeee
Q 011575 74 YLRDLTHHPHLA-GTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (482)
Q Consensus 74 ~L~~Ls~~~r~a-GT~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (482)
.|++|.+.|-.+ .+.++.++++||+++|+++|++++..+
T Consensus 3 ~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~~ 42 (375)
T TIGR01910 3 LLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIE 42 (375)
T ss_pred hHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEEe
Confidence 456666655432 345678999999999999999976543
No 144
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=35.74 E-value=73 Score=33.10 Aligned_cols=42 Identities=10% Similarity=0.122 Sum_probs=30.5
Q ss_pred HHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeeee
Q 011575 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHT 110 (482)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~ 110 (482)
+.+.+.|+.|-+.|=..+..++.++++||++.|+++|+++..
T Consensus 9 ~~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~ 50 (400)
T TIGR01880 9 DIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKT 50 (400)
T ss_pred HHHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeE
Confidence 345567777776554444444578999999999999998754
No 145
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=35.64 E-value=71 Score=32.82 Aligned_cols=41 Identities=15% Similarity=0.300 Sum_probs=32.4
Q ss_pred HHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeeeeee
Q 011575 70 TVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (482)
Q Consensus 70 ~i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (482)
.+.+.|++|.+.|=.+|. +.++++||.+.|+++|++++..+
T Consensus 3 ~~~~~l~~Lv~i~s~s~~--e~~~~~~l~~~l~~~G~~~~~~~ 43 (377)
T PRK08588 3 EKIQILADIVKINSVNDN--EIEVANYLQDLFAKHGIESKIVK 43 (377)
T ss_pred HHHHHHHHHhcCCCCCCc--HHHHHHHHHHHHHHCCCceEEEe
Confidence 456678888887766665 57899999999999999976543
No 146
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=34.78 E-value=74 Score=32.86 Aligned_cols=45 Identities=22% Similarity=0.506 Sum_probs=31.6
Q ss_pred HHHHHHHHHhccCCCCCCC-hhhHHHHHHHHHHHHHCCCeeeeeee
Q 011575 69 YTVSSYLRDLTHHPHLAGT-EPSLDTVRYVQSHFEQLKFNTHTVEY 113 (482)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGT-~g~~~~a~~i~~~~~~~Gl~~~~~~y 113 (482)
+.+.+.|++|.+.+=.++. .++.++++||+++|+++|++++..++
T Consensus 6 ~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~ 51 (394)
T PRK08651 6 FDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEV 51 (394)
T ss_pred HHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4555667777775543322 33568999999999999998765543
No 147
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=34.13 E-value=77 Score=32.29 Aligned_cols=42 Identities=14% Similarity=0.221 Sum_probs=33.1
Q ss_pred HHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeeeeee
Q 011575 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (482)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (482)
..+.+.|++|.+.|-.+|. +.++++||.+.|+++|++++.+.
T Consensus 6 ~~~~~~l~~Lv~i~s~s~~--e~~~~~~l~~~l~~~G~~~~~~~ 47 (348)
T PRK04443 6 LEARELLKGLVEIPSPSGE--EAAAAEFLVEFMESHGREAWVDE 47 (348)
T ss_pred HHHHHHHHHHHcCCCCCCC--hHHHHHHHHHHHHHcCCEEEEcC
Confidence 4566788888887766554 67999999999999999976543
No 148
>TIGR01935 NOT-MenG RraA famliy. This model was initially classified as a "hypothetical equivalog" expressing the tentative hypothesis that all members might have the same function as the E. coli enzyme. Considering the second clade of enterobacterial sequences within this family, that appears to be less tenable. The function of these sequences outside of the narrow RraA equivalog model (TIGR02998) remains obscure. All of these were initially annotated as MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error in the case of the E. coli protein.
Probab=32.74 E-value=1.4e+02 Score=27.08 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=44.4
Q ss_pred ccccccCCCCCcceeEEEEcCCChhhHHHHHHcCCcccCcEEEEEeCCccc---ch-hHHHHHHHcCCeEEEEEec
Q 011575 154 QPYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLS---RS-GVIFLAEAKGAIGVLLYAE 225 (482)
Q Consensus 154 ~~~~ays~~G~v~g~lVyvn~G~~eD~~~L~~~gv~v~GkIvlvr~g~~~~---~~-~kv~~A~~~GA~gvIi~~d 225 (482)
+.|..|++...+-|+.+=+.+.. +.....+.....-.|.|+++..+.... .| .....|+.+|++|+|+---
T Consensus 17 ~~~~~~g~~~~i~G~A~TV~~~~-d~~~~~~ai~~~~~GdVlVid~~g~~~~a~~G~~~~~~a~~~G~~G~VidG~ 91 (150)
T TIGR01935 17 PMFRNFGGRAAFAGPIVTVKCFE-DNSLVREVLEQPGAGRVLVVDGGGSLRCALLGDNLAVLAEENGWEGVIVNGC 91 (150)
T ss_pred hhhhhcCCCCEEEEEEEEEEEEC-CcHHHHHHHhcCCCCeEEEEECCCCCceEeehHHHHHHHHHCCCEEEEEeec
Confidence 34668888888888877776542 211111112234689999998654221 24 3566789999999887643
No 149
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=32.59 E-value=2.4e+02 Score=24.46 Aligned_cols=58 Identities=21% Similarity=0.170 Sum_probs=34.8
Q ss_pred EEEE-cCCChhhHHHHHHcCCcccCcEEEEEeCCc--ccchhHHHHHHHcCCeEEEEEecCC
Q 011575 169 VVFV-NYGREEDYRALEAAGVNVSGCVVMARKGSV--LSRSGVIFLAEAKGAIGVLLYAEWD 227 (482)
Q Consensus 169 lVyv-n~G~~eD~~~L~~~gv~v~GkIvlvr~g~~--~~~~~kv~~A~~~GA~gvIi~~dp~ 227 (482)
|+|+ +++.....+..-......--.|-++|..-. . ...-+..|.+.||.||++...+.
T Consensus 3 l~F~C~~~ay~aad~ag~~~~~~p~~vriIrvpC~Grv-~~~~il~Af~~GADGV~V~gC~~ 63 (124)
T PF02662_consen 3 LAFCCNWCAYAAADLAGVSRLQYPPNVRIIRVPCSGRV-DPEFILRAFEKGADGVLVAGCHP 63 (124)
T ss_pred EEEEeCCCcHHHHHHHhhccCCCCCCeEEEEccCCCcc-CHHHHHHHHHcCCCEEEEeCCCC
Confidence 3444 444433322222223455566777774321 1 25668899999999999998764
No 150
>cd01356 AcnX_swivel Putative Aconitase X swivel domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=32.36 E-value=1.1e+02 Score=26.86 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=31.7
Q ss_pred ceeEEEEcCCChhhHHHHHHcCCcccCcEEEEEeCCccc-chhHHHHHHHcCCe-EEEEEecC
Q 011575 166 YGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLS-RSGVIFLAEAKGAI-GVLLYAEW 226 (482)
Q Consensus 166 ~g~lVyvn~G~~eD~~~L~~~gv~v~GkIvlvr~g~~~~-~~~kv~~A~~~GA~-gvIi~~dp 226 (482)
+|.++..+. |+. |.+++|||+++.+++-.. -+..+..+..+|-+ +.|++.+.
T Consensus 27 tG~iid~~H----~l~-----G~si~gkILv~p~~kGSt~gs~vl~~l~~~g~aP~AiI~~~~ 80 (123)
T cd01356 27 TGKVIDPHH----PLY-----GESIAGKVLVLPGGKGSTVGSYVLYELARNGTAPAAIVFEEA 80 (123)
T ss_pred CCeEeeCCC----CcC-----CCcccceEEEecCCCCcchHHHHHHHHHHcCCCCeeEeecCc
Confidence 577766432 333 789999999999876431 13344445555543 56666654
No 151
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=32.32 E-value=57 Score=33.46 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=30.8
Q ss_pred HHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeeee
Q 011575 73 SYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHT 110 (482)
Q Consensus 73 ~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~ 110 (482)
+.+++|.+.|..+|- +.++++||.+.|+++|+++..
T Consensus 3 ~~~~~L~~ips~s~~--E~~~a~~l~~~l~~~g~~~~~ 38 (363)
T TIGR01891 3 DIRRHLHEHPELSFE--EFKTSSLIAEALESLGIEVRR 38 (363)
T ss_pred HHHHHHhcCCCCCCc--hHHHHHHHHHHHHHcCCceEe
Confidence 567888888888875 689999999999999998754
No 152
>PRK05469 peptidase T; Provisional
Probab=31.81 E-value=85 Score=32.76 Aligned_cols=44 Identities=9% Similarity=0.080 Sum_probs=30.0
Q ss_pred HHHHHHHhccCCCCCCC--------hhhHHHHHHHHHHHHHCCCe-eeeeeeE
Q 011575 71 VSSYLRDLTHHPHLAGT--------EPSLDTVRYVQSHFEQLKFN-THTVEYK 114 (482)
Q Consensus 71 i~~~L~~Ls~~~r~aGT--------~g~~~~a~~i~~~~~~~Gl~-~~~~~y~ 114 (482)
+.+.|++|.+.+=.++. ++..++++||+++|+++|++ +..++..
T Consensus 4 ~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~ 56 (408)
T PRK05469 4 LLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQDVTLDENG 56 (408)
T ss_pred HHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEECCCe
Confidence 44566666653322222 67899999999999999996 5555443
No 153
>PRK07522 acetylornithine deacetylase; Provisional
Probab=31.78 E-value=85 Score=32.28 Aligned_cols=40 Identities=10% Similarity=0.177 Sum_probs=31.1
Q ss_pred HHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeeee
Q 011575 70 TVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHT 110 (482)
Q Consensus 70 ~i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~ 110 (482)
.+.+.|+.|.+.|-.+|.+ +.++++||.++|+++|++++.
T Consensus 5 ~~~~~l~~lv~i~S~s~~~-~~~~~~~l~~~l~~~G~~~~~ 44 (385)
T PRK07522 5 SSLDILERLVAFDTVSRDS-NLALIEWVRDYLAAHGVESEL 44 (385)
T ss_pred hHHHHHHHHhCCCCcCCCc-cHHHHHHHHHHHHHcCCeEEE
Confidence 4566788888877666532 248999999999999998754
No 154
>PRK06837 acetylornithine deacetylase; Provisional
Probab=31.59 E-value=96 Score=32.66 Aligned_cols=40 Identities=13% Similarity=0.310 Sum_probs=30.0
Q ss_pred HHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeeee
Q 011575 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHT 110 (482)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~ 110 (482)
+.+.+.|++|.+.|=.+| .+.++++||++.|+++|++++.
T Consensus 20 ~~~~~~l~~li~ipS~s~--~e~~~~~~l~~~l~~~G~~~~~ 59 (427)
T PRK06837 20 DAQVAFTQDLVRFPSTRG--AEAPCQDFLARAFRERGYEVDR 59 (427)
T ss_pred HHHHHHHHHHhccCCCCC--cHHHHHHHHHHHHHHCCCceEE
Confidence 345567777777554444 4678999999999999998754
No 155
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=30.95 E-value=69 Score=33.59 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=28.9
Q ss_pred CCCCChhhHHHHHHHHHHHHHCCCe-eeeee-e-EEEEeeec
Q 011575 83 HLAGTEPSLDTVRYVQSHFEQLKFN-THTVE-Y-KALLSYPV 121 (482)
Q Consensus 83 r~aGT~g~~~~a~~i~~~~~~~Gl~-~~~~~-y-~v~~~~p~ 121 (482)
...-++++++.++|++++|+++|++ ++.++ + .++...|.
T Consensus 25 ~~ps~~~~~~~a~~l~~~l~~lG~~~v~~d~~~gnv~~~~~~ 66 (410)
T TIGR01882 25 TCPSTPGQLTFGNMLVDDLKSLGLQDAHYDEKNGYVIATIPS 66 (410)
T ss_pred CCCCCHhHHHHHHHHHHHHHHcCCceEEEcCCceEEEEEecC
Confidence 4555678889999999999999997 77764 3 34444454
No 156
>TIGR02998 RraA_entero regulator of ribonuclease activity A. THIS PROTEIN IS _NOT_ MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error .
Probab=30.66 E-value=2.1e+02 Score=26.20 Aligned_cols=72 Identities=22% Similarity=0.206 Sum_probs=45.3
Q ss_pred ccccccCCCCCcceeEEEEcCCChhhHHHHHHcCCcccCcEEEEEeCCccc---ch-hHHHHHHHcCCeEEEEEecC
Q 011575 154 QPYHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVLS---RS-GVIFLAEAKGAIGVLLYAEW 226 (482)
Q Consensus 154 ~~~~ays~~G~v~g~lVyvn~G~~eD~~~L~~~gv~v~GkIvlvr~g~~~~---~~-~kv~~A~~~GA~gvIi~~dp 226 (482)
+.|..|++.-.+-|+.+=|.... +.....+.....-.|+|+++..+.... .| .....|..+|++|+|+.---
T Consensus 21 ~~~~~~g~~~~~~G~A~TV~~~~-d~~~~~~aid~~~pGdVlVid~~g~~~~A~~G~~la~~a~~~G~aGvVidG~v 96 (161)
T TIGR02998 21 PIFSNFGGRSSFGGKVVTVKCFE-HNGLINELLEQNGTGRVLVIDGGGSTRRALIDAELAQLAANNGWEGIVVYGAV 96 (161)
T ss_pred ccccccCCCCEEEEEEEEEEeeC-CcHHHHHHHhccCCCeEEEEECCCCCceEeeCHHHHHHHHHCCCeEEEEeecc
Confidence 35778888877888888776543 211111112234579999988554221 13 34566899999999987543
No 157
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=28.90 E-value=1e+02 Score=31.36 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=31.7
Q ss_pred HHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeeeeee
Q 011575 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (482)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (482)
+++.+.|+.|-+-+= .+.++.++++||++.|+++|++++.++
T Consensus 10 ~~~~~~l~~lv~i~s--~s~~e~~~~~~l~~~l~~~g~~~~~~~ 51 (346)
T PRK00466 10 QKAKELLLDLLSIYT--PSGNETNATKFFEKISNELNLKLEILP 51 (346)
T ss_pred HHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 466677888877553 344567899999999999999876544
No 158
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=28.66 E-value=44 Score=35.45 Aligned_cols=42 Identities=7% Similarity=-0.026 Sum_probs=36.0
Q ss_pred cChHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeee
Q 011575 66 SSNYTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTH 109 (482)
Q Consensus 66 ~~~~~i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~ 109 (482)
+..+++.++..+|++-||.++- +.+++.|+.++++..|+.+.
T Consensus 2 ~~~~~l~~~F~~~~kI~~~S~~--e~~~~p~~~~~~k~~~~~v~ 43 (414)
T COG2195 2 LKMERLLDRFLELVKIPTQSKH--EKAVAPSTVGQAKLLGLLVE 43 (414)
T ss_pred cchHHHHHHHHHHeeCCCCCCC--ccccccccHHHHHHcCchhh
Confidence 3456778888889999999887 78999999999999999885
No 159
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=27.97 E-value=67 Score=32.62 Aligned_cols=42 Identities=31% Similarity=0.328 Sum_probs=32.8
Q ss_pred HHHHHHcCCcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEE
Q 011575 180 YRALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLL 222 (482)
Q Consensus 180 ~~~L~~~gv~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi 222 (482)
.+.|.+.=.-|+|||-+.-.|+.- +|.-+.-|...||+||.+
T Consensus 265 I~~L~Evv~aV~~ri~V~lDGGVR-~G~DVlKALALGAk~Vfi 306 (363)
T KOG0538|consen 265 IEALPEVVKAVEGRIPVFLDGGVR-RGTDVLKALALGAKGVFI 306 (363)
T ss_pred HHHHHHHHHHhcCceEEEEecCcc-cchHHHHHHhcccceEEe
Confidence 444443222488999999889887 899999999999999875
No 160
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=27.11 E-value=1.2e+02 Score=31.80 Aligned_cols=43 Identities=12% Similarity=0.245 Sum_probs=31.7
Q ss_pred HHHHHHHHHhccCCCCCCC-hhhHHHHHHHHHHHHHCCCeeeee
Q 011575 69 YTVSSYLRDLTHHPHLAGT-EPSLDTVRYVQSHFEQLKFNTHTV 111 (482)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGT-~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (482)
+.+.+.|+.|-+.|=..+. .++.++++||.+.|+++|++++..
T Consensus 14 ~~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~ 57 (427)
T PRK13013 14 DDLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELI 57 (427)
T ss_pred HHHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEE
Confidence 4577788888876544422 234689999999999999997654
No 161
>PF12459 DUF3687: D-Ala-teichoic acid biosynthesis protein; InterPro: IPR021008 Proteins in this family are bacterial proteins of approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important. A number of entries are annotated as D-Ala-teichoic acid biosynthesis protein; however there is no direct evidence to support this annotation.
Probab=26.24 E-value=1.1e+02 Score=21.58 Aligned_cols=26 Identities=12% Similarity=-0.091 Sum_probs=19.7
Q ss_pred cchHHHHHHHHHHHHHHHHhccCCCC
Q 011575 18 PPLMTFTFLLILCIIGFYTLHHPYPS 43 (482)
Q Consensus 18 ~~l~~~~~~~~~~~~~~~~~~~~~~~ 43 (482)
.+++++++++++.++-|+.+.++...
T Consensus 10 fi~~T~fYf~Ill~L~ylYgy~g~~~ 35 (42)
T PF12459_consen 10 FIGKTLFYFAILLALIYLYGYSGIGQ 35 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 46679999999888888877665443
No 162
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=25.53 E-value=1.2e+02 Score=30.83 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=32.6
Q ss_pred HHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHC-CCeeee
Q 011575 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQL-KFNTHT 110 (482)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~-Gl~~~~ 110 (482)
+++.+.|++|-+.|-.+|. +.++++||+++|+++ |+++..
T Consensus 7 ~~~~~~l~~li~ips~s~~--e~~~~~~l~~~l~~~~~~~~~~ 47 (352)
T PRK13007 7 ADLAELTAALVDIPSVSGD--EKALADAVEAALRALPHLEVIR 47 (352)
T ss_pred HHHHHHHHHHhcCCCCCch--HHHHHHHHHHHHHhCcCceEEe
Confidence 4677889999988888775 578999999999995 887643
No 163
>PRK07473 carboxypeptidase; Provisional
Probab=25.23 E-value=1.6e+02 Score=30.49 Aligned_cols=44 Identities=5% Similarity=-0.022 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhccCCCCCCChhh-HHHHHHHHHHHHHCCCeeeee
Q 011575 68 NYTVSSYLRDLTHHPHLAGTEPS-LDTVRYVQSHFEQLKFNTHTV 111 (482)
Q Consensus 68 ~~~i~~~L~~Ls~~~r~aGT~g~-~~~a~~i~~~~~~~Gl~~~~~ 111 (482)
.+++.+.|+.|.+.+=.+|.+.+ .+.++|+.+.|+++|++++..
T Consensus 10 ~~~~~~~l~~Lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~ 54 (376)
T PRK07473 10 SEAMLAGLRPWVECESPTWDAAAVNRMLDLAARDMAIMGATIERI 54 (376)
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 44566677788776555565433 467889999999999998653
No 164
>PRK09372 ribonuclease activity regulator protein RraA; Provisional
Probab=24.18 E-value=2.7e+02 Score=25.44 Aligned_cols=68 Identities=21% Similarity=0.230 Sum_probs=40.1
Q ss_pred ccccCCCCCcceeEEEEcCCChhhHHHHHHcCCcccCcEEEEEeCCcc---cchh-HHHHHHHcCCeEEEEEe
Q 011575 156 YHAYSPSGSAYGKVVFVNYGREEDYRALEAAGVNVSGCVVMARKGSVL---SRSG-VIFLAEAKGAIGVLLYA 224 (482)
Q Consensus 156 ~~ays~~G~v~g~lVyvn~G~~eD~~~L~~~gv~v~GkIvlvr~g~~~---~~~~-kv~~A~~~GA~gvIi~~ 224 (482)
+.++.+...+.|+.+=|-+. .++....+.....-.|.|+++..++.. -.|+ ....|+.+|++|+|+.-
T Consensus 23 i~~~~~~~~~~G~A~TV~~~-~d~~~~~~~i~~~~~GdVlVid~~g~~~~a~~G~~~~~~a~~~G~~G~VidG 94 (159)
T PRK09372 23 FSSFGGRSSFGGPITTVKCF-EDNGLVKELLEEPGEGRVLVVDGGGSLRRALVGDNLAELAVDNGWEGIVVYG 94 (159)
T ss_pred ccccCCCCEEEEEEEEEEEe-CCcHHHHHHHhcCCCCeEEEEECCCCcCcEeehHHHHHHHHHcCCeEEEecc
Confidence 44566666777777666544 222211112233568999998855421 0344 45668899999988764
No 165
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=23.72 E-value=1e+02 Score=31.91 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=33.0
Q ss_pred HHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeeeeeeeE
Q 011575 74 YLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEYK 114 (482)
Q Consensus 74 ~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~~y~ 114 (482)
.|+.|+.-+=.+|- +.+.+++++++|++++.+++.+.+-
T Consensus 3 ~L~~L~~~~gpSG~--E~~v~~~i~~~l~~~~~~v~~D~~G 41 (350)
T TIGR03107 3 KIKEVTELQGTSGF--EHPIRDYLRQDITPLVDQVETDGLG 41 (350)
T ss_pred HHHHHHhCCCCCCC--cHHHHHHHHHHHHhhCCEEEECCCC
Confidence 48888887777777 6889999999999999988877664
No 166
>PLN02280 IAA-amino acid hydrolase
Probab=23.67 E-value=1.4e+02 Score=32.34 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=29.4
Q ss_pred HHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeeee
Q 011575 70 TVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHT 110 (482)
Q Consensus 70 ~i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~ 110 (482)
.+.+..++++..|-++|- +.++++||.+.|+++|+++..
T Consensus 98 ~l~~l~r~lh~~PEls~~--E~~t~~~i~~~L~~~G~~~~~ 136 (478)
T PLN02280 98 WLKSVRRKIHENPELAFE--EYKTSELVRSELDRMGIMYRY 136 (478)
T ss_pred HHHHHHHHHhcCCCCCCc--HHHHHHHHHHHHHHCCCeEEe
Confidence 355566666666655555 689999999999999999753
No 167
>PRK06446 hypothetical protein; Provisional
Probab=23.60 E-value=1.6e+02 Score=31.07 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=29.5
Q ss_pred HHHHHHHHhccCCCCCCC-hhhHHHHHHHHHHHHHCCCeeeeee
Q 011575 70 TVSSYLRDLTHHPHLAGT-EPSLDTVRYVQSHFEQLKFNTHTVE 112 (482)
Q Consensus 70 ~i~~~L~~Ls~~~r~aGT-~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (482)
.+.+.|+.|-+.+=.++. ++..++++||++.|+++|++++..+
T Consensus 3 ~~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~ 46 (436)
T PRK06446 3 EELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIER 46 (436)
T ss_pred hHHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEe
Confidence 344566666665444432 2337899999999999999986543
No 168
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=22.55 E-value=1.9e+02 Score=30.23 Aligned_cols=33 Identities=33% Similarity=0.197 Sum_probs=22.1
Q ss_pred ccCcEEEEEeCCcccchhHHHHHHHcCCeEEEEE
Q 011575 190 VSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLLY 223 (482)
Q Consensus 190 v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi~ 223 (482)
+.++|-|+-.|++. ++..+..|...||.+|.+-
T Consensus 280 v~~~i~vi~dGGIr-~g~Dv~KaLalGAd~V~ig 312 (367)
T TIGR02708 280 VDKRVPIVFDSGVR-RGQHVFKALASGADLVALG 312 (367)
T ss_pred hCCCCcEEeeCCcC-CHHHHHHHHHcCCCEEEEc
Confidence 34566666667776 6777777777888777653
No 169
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=22.28 E-value=4.4e+02 Score=24.31 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=39.3
Q ss_pred CChhHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCcCCCccHHHHHHHhhhcccccEEEEEEe
Q 011575 363 DPNSGTAALLDIARRYALLMRLGWSPRRTIIFCSWDAEEFGMIGSTEWVEENLVNLGAKAVAYLNV 428 (482)
Q Consensus 363 D~~sG~a~llelar~l~~~~~~g~~p~rtI~f~~~~~eE~gl~GS~~~~~~~~~~~~~~~~a~inl 428 (482)
+--..+----.++|++.+|+++||.|+ |+++.-+ .|..-|+++-.. ..+++.|.-+
T Consensus 42 ~~e~~~~rg~av~~a~~~L~~~Gf~PD--vI~~H~G------WGe~Lflkdv~P--~a~li~Y~E~ 97 (171)
T PF12000_consen 42 DFEAAVLRGQAVARAARQLRAQGFVPD--VIIAHPG------WGETLFLKDVFP--DAPLIGYFEF 97 (171)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCC--EEEEcCC------cchhhhHHHhCC--CCcEEEEEEE
Confidence 333444555677888888888899997 7777544 777888887543 3577888665
No 170
>PRK07906 hypothetical protein; Provisional
Probab=22.18 E-value=1.1e+02 Score=32.01 Aligned_cols=26 Identities=12% Similarity=0.293 Sum_probs=21.7
Q ss_pred ChhhHHHHHHHHHHHHHCCCeeeeee
Q 011575 87 TEPSLDTVRYVQSHFEQLKFNTHTVE 112 (482)
Q Consensus 87 T~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (482)
++++.++++||.++|+++|++++.++
T Consensus 21 ~~~e~~~~~~l~~~l~~~G~~~~~~~ 46 (426)
T PRK07906 21 GKGEREAAEYVAEKLAEVGLEPTYLE 46 (426)
T ss_pred CchHHHHHHHHHHHHHhCCCCeEEee
Confidence 35678999999999999999976543
No 171
>PRK13004 peptidase; Reviewed
Probab=21.30 E-value=1.7e+02 Score=30.42 Aligned_cols=38 Identities=24% Similarity=0.503 Sum_probs=31.4
Q ss_pred HHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCee
Q 011575 69 YTVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNT 108 (482)
Q Consensus 69 ~~i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~ 108 (482)
+.+.+.|++|.+.|-.+|. +.++++||.+.|+++|+++
T Consensus 15 ~~~~~~l~~lv~ips~s~~--e~~~a~~l~~~l~~~G~~~ 52 (399)
T PRK13004 15 ADMTRFLRDLIRIPSESGD--EKRVVKRIKEEMEKVGFDK 52 (399)
T ss_pred HHHHHHHHHHhcCCCCCCc--hHHHHHHHHHHHHHcCCcE
Confidence 4577788888887766665 6789999999999999974
No 172
>PRK07205 hypothetical protein; Provisional
Probab=21.12 E-value=1.5e+02 Score=31.30 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=30.2
Q ss_pred ChHHHHHHHHHhccCCCCCCCh--------hhHHHHHHHHHHHHHCCCeeeee
Q 011575 67 SNYTVSSYLRDLTHHPHLAGTE--------PSLDTVRYVQSHFEQLKFNTHTV 111 (482)
Q Consensus 67 ~~~~i~~~L~~Ls~~~r~aGT~--------g~~~~a~~i~~~~~~~Gl~~~~~ 111 (482)
+.+.+.+.|+.|-+.+=.++.+ +-.++++|+.+.|+++|++++.+
T Consensus 9 ~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 61 (444)
T PRK07205 9 VQDACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLGFKTYLD 61 (444)
T ss_pred hHHHHHHHHHHHcccccccCCCcCCCCCchhHHHHHHHHHHHHHhCCCEEEEc
Confidence 3445666777777654333322 22678999999999999987543
No 173
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=21.10 E-value=1.2e+02 Score=29.65 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=31.4
Q ss_pred ceeEEEEcCCC--hhhH-HHHHHcCCcccCcEEEEEeCCcccchhHHHHHHHcCCeEEEE
Q 011575 166 YGKVVFVNYGR--EEDY-RALEAAGVNVSGCVVMARKGSVLSRSGVIFLAEAKGAIGVLL 222 (482)
Q Consensus 166 ~g~lVyvn~G~--~eD~-~~L~~~gv~v~GkIvlvr~g~~~~~~~kv~~A~~~GA~gvIi 222 (482)
--+++|..||+ ..+- +.+.+.-..+. .+.|+-.|++. ..++++.+.++||..|++
T Consensus 153 g~~~iYLEaGSGa~~~v~~~v~~~~~~~~-~~~LivGGGIr-s~e~A~~~~~aGAD~IVv 210 (230)
T PF01884_consen 153 GMPIIYLEAGSGAYGPVPEEVIAAVKKLS-DIPLIVGGGIR-SPEQAREMAEAGADTIVV 210 (230)
T ss_dssp T-SEEEEE--TTSSS-HHHHHHHHHHHSS-SSEEEEESS---SHHHHHHHHCTTSSEEEE
T ss_pred CCCEEEEEeCCCCCCCccHHHHHHHHhcC-CccEEEeCCcC-CHHHHHHHHHCCCCEEEE
Confidence 46799998864 3344 22222111233 34455557776 789999999999997775
No 174
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=21.01 E-value=1.6e+02 Score=30.11 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=26.9
Q ss_pred HHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeeeee
Q 011575 73 SYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTV 111 (482)
Q Consensus 73 ~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (482)
+.|++|-+.|=.++ .+.++++||+++|+++|++++..
T Consensus 3 ~~l~~lv~ips~s~--~e~~~~~~i~~~l~~~G~~~~~~ 39 (370)
T TIGR01246 3 ELAKELISRPSVTP--NDAGCQDIIAERLEKLGFEIEWM 39 (370)
T ss_pred HHHHHHhcCCCCCc--chHHHHHHHHHHHHHCCCEEEEE
Confidence 34566666544444 46789999999999999997654
No 175
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=20.30 E-value=1.8e+02 Score=29.72 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=28.8
Q ss_pred HHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeeeee
Q 011575 71 VSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTV 111 (482)
Q Consensus 71 i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~ 111 (482)
+.+.|++|-+.|=.++ .+.++++||++.|+++|++++..
T Consensus 4 ~~~~l~~Lv~ips~s~--~e~~~~~~l~~~l~~~G~~~~~~ 42 (375)
T PRK13009 4 VLELAQDLIRRPSVTP--DDAGCQDLLAERLEALGFTCERM 42 (375)
T ss_pred HHHHHHHHhCCCCCCC--chhhHHHHHHHHHHHcCCeEEEe
Confidence 4456777776554443 46789999999999999987644
No 176
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=20.27 E-value=1.4e+02 Score=30.32 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=25.5
Q ss_pred HHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeeeeee
Q 011575 75 LRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVE 112 (482)
Q Consensus 75 L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~~ 112 (482)
|++|.+.+=.+|.+ +.++++||++.|+++|++++.++
T Consensus 3 l~~lv~i~S~s~~~-~~~~~~~l~~~l~~~G~~~~~~~ 39 (364)
T TIGR01892 3 LTKLVAFDSTSFRP-NVDLIDWAQAYLEALGFSVEVQP 39 (364)
T ss_pred HHHhhCcCCcCCcc-HHHHHHHHHHHHHHcCCeEEEEe
Confidence 44555544334432 36899999999999999876544
No 177
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=20.10 E-value=1.8e+02 Score=30.29 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=35.8
Q ss_pred HHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHCCCeeeeeeeE
Q 011575 70 TVSSYLRDLTHHPHLAGTEPSLDTVRYVQSHFEQLKFNTHTVEYK 114 (482)
Q Consensus 70 ~i~~~L~~Ls~~~r~aGT~g~~~~a~~i~~~~~~~Gl~~~~~~y~ 114 (482)
.+.+.|++|+..+=.+|- +.++.+|++++|++++.+++.+..-
T Consensus 3 ~~~~~LkeL~~~~gpsG~--E~eVr~~~~~el~~~~~ev~~D~lG 45 (355)
T COG1363 3 ELLELLKELLEAPGPSGY--EEEVRDVLKEELEPLGDEVEVDRLG 45 (355)
T ss_pred HHHHHHHHHHcCCCCCCc--HHHHHHHHHHHHHHhCCceEEcCCC
Confidence 467789999998877887 4669999999999999998776654
Done!