Query 011576
Match_columns 482
No_of_seqs 299 out of 1898
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 11:01:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g91_A MTH0212, exodeoxyribonu 100.0 3.2E-42 1.1E-46 337.0 24.6 251 1-327 4-259 (265)
2 2j63_A AP-endonuclease; base e 100.0 2.2E-40 7.4E-45 350.6 24.6 275 1-325 150-466 (467)
3 2voa_A AF_EXO, XTHA, exodeoxyr 100.0 2.2E-37 7.5E-42 299.7 23.3 250 1-325 2-257 (257)
4 2jc5_A Exodeoxyribonuclease; h 100.0 5.6E-37 1.9E-41 296.5 21.8 251 1-326 2-257 (259)
5 2jc4_A Exodeoxyribonuclease II 100.0 1.2E-36 4.2E-41 293.6 23.5 251 1-325 1-256 (256)
6 1hd7_A DNA-(apurinic or apyrim 100.0 1.2E-36 4.3E-41 306.4 20.7 250 1-325 62-318 (318)
7 2o3h_A DNA-(apurinic or apyrim 100.0 3E-36 1E-40 297.1 23.0 250 1-325 29-285 (285)
8 1ako_A Exonuclease III; AP-end 100.0 7.1E-36 2.4E-40 290.2 20.8 251 1-324 1-267 (268)
9 1vyb_A ORF2 contains A reverse 100.0 1.3E-34 4.5E-39 276.0 19.7 227 1-324 8-238 (238)
10 2ei9_A Non-LTR retrotransposon 100.0 2.5E-31 8.6E-36 258.2 15.7 212 1-327 8-221 (240)
11 1wdu_A TRAS1 ORF2P; four-layer 100.0 6.3E-29 2.2E-33 240.0 19.3 222 1-326 20-244 (245)
12 4gew_A 5'-tyrosyl-DNA phosphod 100.0 2E-28 6.9E-33 251.6 21.8 231 1-324 120-361 (362)
13 4fva_A 5'-tyrosyl-DNA phosphod 100.0 4.4E-27 1.5E-31 225.3 22.2 231 1-324 14-255 (256)
14 3teb_A Endonuclease/exonucleas 99.9 1.2E-25 4.1E-30 217.7 18.7 240 1-325 4-266 (266)
15 3l1w_A Uncharacterized protein 99.9 8.1E-25 2.8E-29 211.8 22.3 240 1-327 1-253 (257)
16 4f1h_A Tyrosyl-DNA phosphodies 99.9 5.6E-25 1.9E-29 207.5 19.1 237 1-324 4-249 (250)
17 4gz1_A Tyrosyl-DNA phosphodies 99.9 5E-25 1.7E-29 210.6 18.4 235 1-325 10-254 (256)
18 3g6s_A Putative endonuclease/e 99.9 5E-24 1.7E-28 207.6 20.2 244 1-327 4-262 (267)
19 1zwx_A SMCL, sphingomyelinase- 99.9 6.1E-23 2.1E-27 203.2 18.8 213 1-267 11-257 (301)
20 3mpr_A Putative endonuclease/e 99.9 7.7E-22 2.6E-26 196.2 19.9 257 1-326 7-290 (298)
21 2ddr_A Sphingomyelin phosphodi 99.9 2.1E-21 7E-26 192.4 17.8 216 1-267 10-262 (306)
22 3i41_A Beta-hemolysin; beta to 99.8 8.7E-21 3E-25 190.8 16.3 211 1-268 30-276 (317)
23 3ngq_A CCR4-NOT transcription 99.8 6.2E-18 2.1E-22 175.2 18.2 178 1-194 32-260 (398)
24 4b8c_D Glucose-repressible alc 99.7 8.5E-18 2.9E-22 187.3 2.7 81 1-81 395-495 (727)
25 2a40_B Deoxyribonuclease-1; WA 99.6 7.4E-16 2.5E-20 149.9 13.4 158 1-193 1-174 (260)
26 2f1n_A CDT B, cytolethal diste 99.6 2.3E-15 7.9E-20 145.1 13.7 150 1-194 16-192 (262)
27 1sr4_B CDT B, cytolethal diste 99.6 7.9E-15 2.7E-19 142.6 15.7 150 1-191 5-181 (261)
28 2imq_X Salivary nitrophorin; f 99.4 5.3E-13 1.8E-17 132.2 12.6 37 1-41 9-50 (282)
29 1i9z_A Synaptojanin, phosphati 99.4 4.6E-12 1.6E-16 128.8 15.0 34 1-38 27-65 (347)
30 2xsw_A 72 kDa inositol polypho 99.3 7.5E-11 2.6E-15 120.3 17.7 74 1-82 28-107 (357)
31 3mtc_A Type II inositol-1,4,5- 99.0 1.2E-08 4.2E-13 101.7 16.4 37 1-41 10-50 (313)
32 4a9c_A Phosphatidylinositol-3, 98.7 5.6E-07 1.9E-11 89.9 17.2 70 2-82 11-101 (316)
No 1
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=100.00 E-value=3.2e-42 Score=337.02 Aligned_cols=251 Identities=33% Similarity=0.589 Sum_probs=205.3
Q ss_pred CEEEEeeccCccccccccchHHHHHhhcCCcEEEEecccccccchhhHHHhhcCCcEEEeecccCCCCCCcceEEEEEEe
Q 011576 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (482)
Q Consensus 1 mrIlTwNVnGl~~~~~r~~~l~~~L~~~~pDII~LQEtk~~~~~l~~~l~~~~gY~~~~s~~~~~~~g~~g~~GVAIlsR 80 (482)
|||+||||+|++.+.++ .+.++|+..+|||||||||+.....+...+....||..++... +.+|++|||||+|
T Consensus 4 l~i~s~Nv~g~~~~~~~--~l~~~i~~~~~DIv~LQEt~~~~~~~~~~~~~~~gy~~~~~~~-----~~~~~~Gvail~k 76 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRK--GFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPA-----ERKGYSGVAMYTK 76 (265)
T ss_dssp EEEEEEECSCHHHHHHH--THHHHHHHHCCSEEEEECCCSCGGGSCHHHHCCTTCEEEEECB-----SSTTSCCEEEEES
T ss_pred cEEEEEEcCCchhhhhh--hHHHHHHhcCCCEEEEEeccccccccChhhhcccCCcEEEccC-----CCCCcCEEEEEEe
Confidence 69999999999987765 3999999999999999999987766654333468999877644 3467789999999
Q ss_pred ccCCCCCcccccceeeeecccccccccCcccccCccccccccccccCCCCCEEEEeeCeEEEEEEEecCCCCCChhhHHH
Q 011576 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (482)
Q Consensus 81 ~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eGR~i~v~~~~~~l~nvY~P~~~~~~~~r~~~ 160 (482)
.+ +..+..++. ....|.+||++.++++.+.|+|+|+|+... +.++..+
T Consensus 77 ~~----------~~~~~~~~~---------------------~~~~d~~gr~i~~~~~~~~i~~vy~p~~~~-~~~~~~~ 124 (265)
T 3g91_A 77 VP----------PSSLREGFG---------------------VERFDTEGRIQIADFDDFLLYNIYFPNGAM-SEERLKY 124 (265)
T ss_dssp SC----------CSEEECCCS---------------------CHHHHSBSCEEEEECSSCEEEEEECCCCTT-CHHHHHH
T ss_pred cC----------hHHhccCCC---------------------CcccCCcCCEEEEEeCCEEEEEEEecCCCC-CchhHHH
Confidence 84 333333321 013578999999999999999999999886 5678899
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEecCCCCCCCcccccCC-----CCCCCchHHHHHHHHHHHHcCCCccccccccCCCC
Q 011576 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235 (482)
Q Consensus 161 k~~fl~~L~~~i~~l~~~~~pvII~GDFN~~~~~~D~~~~-----~~~~~~~~~r~~l~~ll~~~g~~L~Dv~R~~~P~~ 235 (482)
|.+|++.|.+.+..+...+.++||+||||+.+.++|.... ..++.+.+ +.+|+.++ +.| |+|+||..+|..
T Consensus 125 r~~~~~~l~~~~~~~~~~~~~~ii~GDfN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~l~-~~g--l~D~~r~~~p~~ 200 (265)
T 3g91_A 125 KLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVE-RAWIDKFI-ENG--YVDTFRMFNSDP 200 (265)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBSCTGGGTTSTTSCHHH-HHHHHHHH-HTT--EEETHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEECccccCCchhhccCHhhcCCCCccCHHH-HHHHHHHH-hcC--cEEeeHhhCCCC
Confidence 9999999999999887668999999999999988887653 24555555 78899988 665 999999999997
Q ss_pred CCccccCCCCCCCcccCCcceEEEEEEcCCCccccccccccccccceeeeeeeeeccccCCCCCCCCccCCCCcCCCCCC
Q 011576 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 315 (482)
Q Consensus 236 ~~~yT~~s~~~~~~~~n~gsRID~Ilvs~~~l~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~SD 315 (482)
. .||||+.+++++..+.+.||||||+++.+.. .+.++.|... ..+||
T Consensus 201 ~-~yT~~~~~~~~~~~~~~~rID~il~s~~~~~-------------~~~~~~i~~~-------------------~~~SD 247 (265)
T 3g91_A 201 G-QYTWWSYRTRARERNVGWRLDYFFVNEEFKG-------------KVKRSWILSD-------------------VMGSD 247 (265)
T ss_dssp C-CCSBCCSSTTTTTTTCCBCCEEEEEEGGGGG-------------GEEEEEECTT-------------------CCSSS
T ss_pred C-CCCCcCCCCCccccCceEEEEEEEECHHHHh-------------hhcEEEEeCC-------------------CCCCC
Confidence 6 6999999999888899999999999998755 7889999763 26799
Q ss_pred CcceEEEEecCC
Q 011576 316 HAPVYMCLGEVP 327 (482)
Q Consensus 316 H~PV~~~l~~~~ 327 (482)
|+||+++|....
T Consensus 248 H~Pv~~~~~~~~ 259 (265)
T 3g91_A 248 HCPIGLEIELLE 259 (265)
T ss_dssp BCCEEEEEECCC
T ss_pred cceEEEEhhhhh
Confidence 999999998654
No 2
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=100.00 E-value=2.2e-40 Score=350.63 Aligned_cols=275 Identities=26% Similarity=0.381 Sum_probs=198.2
Q ss_pred CEEEEeeccCcccccccc-chHHHHHhhcCCcEEEEecccccccchhhH--HHhhcCCcEEEeecccCCCCCCcceEEEE
Q 011576 1 MKIVTYNVNGLRQRVSQF-GSLRKLLDSFDADIICFQETKLRRQELKSD--LVMADGYESFFSCTRTSDKGRTGYSGVAT 77 (482)
Q Consensus 1 mrIlTwNVnGl~~~~~r~-~~l~~~L~~~~pDII~LQEtk~~~~~l~~~--l~~~~gY~~~~s~~~~~~~g~~g~~GVAI 77 (482)
|||+||||||++.+.++. ..|.++|+.++|||||||||+.....+... +....||+.++..+ .+..||+||||
T Consensus 150 LKI~TwNVnGl~~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~~~~~la~~~GY~~~~~~~----~~~~g~~GVAI 225 (467)
T 2j63_A 150 YKFITWNVAGLRGLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPC----AFKRGYSGTRT 225 (467)
T ss_dssp EEEEEEECSCHHHHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECC----SSSTTSCCEEE
T ss_pred eEEEEEEcCCCcccccccHHHHHHHHHHcCCCEEEEEecccchhccchHHHHhhcCCceEEEecc----cCCCCcceEEE
Confidence 799999999998766542 359999999999999999999876555321 22357898777643 24567889999
Q ss_pred EEeccCCCCCcccccce--eeeecccccccccCcccccCccccccccccccCCCCCEEEEee----------CeEEEEEE
Q 011576 78 FCRVKSPFSSTEVALPV--AAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH----------GHFILFNV 145 (482)
Q Consensus 78 lsR~~~~f~~~~~~~pi--~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eGR~i~v~~----------~~~~l~nv 145 (482)
|+|+++.. .++ .+..++..... .|.. +..+. +.......|.+||+|.+++ ..|.|+|+
T Consensus 226 lsR~pi~~------~~l~~~~~~~~~~p~~--~~~~-~~~gs-~~~~~~~~D~egR~I~a~~~~~g~~~~~~~~~~vinv 295 (467)
T 2j63_A 226 YMKNSTTV------KGLHARCTRGFALPSE--PQAD-AAAGS-RVLVEGAGDEEGRVLTTFLSPDPDSASSSSRIALVNT 295 (467)
T ss_dssp EEECCCCC------CTSCCEEEESSCCCCC---------------CCCCCCCTTCCEEEEEECSSCCC----CCEEEEEE
T ss_pred EEeCCccc------cccceeeeeccccccc--cccc-ccccc-ccccccccCCCCcEEEEEEEeCCcccccCceEEEEEE
Confidence 99985310 011 12233321100 0000 00000 0000023578999999887 57999999
Q ss_pred EecCCCCCChhhHHHHH-HHHHHHHHHHHHHHh------------------CCCeEEEecCCCCCCCcccccC-------
Q 011576 146 YGPRADSEDTVRIQFKL-QFFHVLQKRWEFLLC------------------QGRRIFVVGDLNIAPAAIDRCD------- 199 (482)
Q Consensus 146 Y~P~~~~~~~~r~~~k~-~fl~~L~~~i~~l~~------------------~~~pvII~GDFN~~~~~~D~~~------- 199 (482)
|+|+... +.++..+|. .|++.|.+++..+.. .+.|+|||||||+++.++|.+.
T Consensus 296 YlP~~~~-~~~r~~~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g~~~~~~pvIL~GDFN~~p~~~D~~~~~~~~~~ 374 (467)
T 2j63_A 296 YVANSGM-GLTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYYAGTFKSM 374 (467)
T ss_dssp ECCCCCT-TSTTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCCCSTTSBCCCSCHHHH
T ss_pred ECCCCCc-chHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhcccccCCcEEEeccccCCCchhhhccccchhhc
Confidence 9999864 346777777 466778888877642 3689999999999998888765
Q ss_pred -CCCCCCchHHHHHHHHHHHHcCCCccccccccCCCCCCccccCCCCCCCcccCCcceEEEEEEcCCCcccccccccccc
Q 011576 200 -AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 278 (482)
Q Consensus 200 -~~~~~~~~~~r~~l~~ll~~~g~~L~Dv~R~~~P~~~~~yT~~s~~~~~~~~n~gsRID~Ilvs~~~l~~~~~l~~~~~ 278 (482)
...+|.+.+ |.||..+|.+.+ |+|+||.++|...+.||||+++.++++.|.+.||||||+++.+..
T Consensus 375 ~~~~gf~~~e-r~~~~~lL~~~g--L~DafR~~~p~~~~~yTw~s~r~~~~~~n~g~RIDyIlvS~~l~~---------- 441 (467)
T 2j63_A 375 QECSGFAPEE-RMSFRETMQRTN--SVDIFRQLYPQAGPVYSFWSQRINGRPRNLGWRLDYFVVSSRLAS---------- 441 (467)
T ss_dssp TTSTTSCHHH-HHHHHHHHHHTT--EEEHHHHHCTTBCSCCSBCCTTTTTTTTTCCBCCEEEEEEGGGGG----------
T ss_pred ccccccCHHH-HHHHHHHHhhCC--CEEehHhhCCCCCCCccccCCCCCcccCCCCceeEEEEEcHHHHc----------
Confidence 124576666 889999987666 999999999976557999999988888889999999999998743
Q ss_pred ccceeeeeeeeeccccCCCCCCCCccCCCCcCCCCCCCcceEEEEec
Q 011576 279 VTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 325 (482)
Q Consensus 279 ~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~SDH~PV~~~l~~ 325 (482)
.|.+|.|... ..+|||+||+++|..
T Consensus 442 ---~v~~~~I~~~-------------------~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 442 ---YVVDCFPMPT-------------------VMGSDHCPFQMWMRH 466 (467)
T ss_dssp ---GEEEEEECTT-------------------CCSSSBCCEEEEEEC
T ss_pred ---ceeEEEECCC-------------------CCCCCcccEEEEEEc
Confidence 6899999753 268999999999975
No 3
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.2e-37 Score=299.73 Aligned_cols=250 Identities=29% Similarity=0.396 Sum_probs=185.3
Q ss_pred CEEEEeeccCccccccccchHHHHHhhcCCcEEEEecccccccchhhHHHhhcCCcEEEeecccCCCCCCcceEEEEEEe
Q 011576 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (482)
Q Consensus 1 mrIlTwNVnGl~~~~~r~~~l~~~L~~~~pDII~LQEtk~~~~~l~~~l~~~~gY~~~~s~~~~~~~g~~g~~GVAIlsR 80 (482)
|||+||||+|++.+.++ +.++|++++|||||||||+.....+....+...||..++.. ..++.|||||+|
T Consensus 2 lrv~t~Nv~g~~~~~~~---i~~~i~~~~~Dii~lQE~~~~~~~~~~~~~~~~gy~~~~~~-------~~~~~G~ailsr 71 (257)
T 2voa_A 2 LKIATFNVNSIRSRLHI---VIPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFSG-------SKGRNGVAIASL 71 (257)
T ss_dssp EEEEEEECSCGGGTHHH---HHHHHHHHCCSEEEEECCCCCGGGCCHHHHHTTTCEEEEEE-------ETTEEEEEEEES
T ss_pred eEEEEEecCChHHHHHH---HHHHHhhcCCCEEEEEEeecchhhcCHHHhhhCCCcEEEcC-------CCCccEEEEEEc
Confidence 69999999999876554 99999999999999999987654443333456799877642 235679999999
Q ss_pred ccCCCCCcccccceeeeecccccccccCcccccCccccccccccccCCCCCEEEEeeCeEEEEEEEecCCCCCChhhHHH
Q 011576 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (482)
Q Consensus 81 ~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eGR~i~v~~~~~~l~nvY~P~~~~~~~~r~~~ 160 (482)
.++ ..+..++.+ ...| ++|++.++++.+.|+|+|+|+....+.++.++
T Consensus 72 ~~~----------~~~~~~~~~---------------------~~~~-~~r~l~~~~~~~~v~~~h~p~~~~~~~~~~~~ 119 (257)
T 2voa_A 72 EEP----------EDVSFGLDS---------------------EPKD-EDRLIRAKIAGIDVINTYVPQGFKIDSEKYQY 119 (257)
T ss_dssp SCC----------EEEEESCSS---------------------SSCC-GGGEEEEEETTEEEEEEECCCCSCTTSHHHHH
T ss_pred cCh----------HHheecCCC---------------------Cccc-cCcEEEEEECCEEEEEEEeCCCCCCCcHHHHH
Confidence 842 112222210 0134 78998888899999999999976533466677
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEecCCCCCCCcccccCC-----CCCCCchHHHHHHHHHHHHcCCCccccccccCCCC
Q 011576 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235 (482)
Q Consensus 161 k~~fl~~L~~~i~~l~~~~~pvII~GDFN~~~~~~D~~~~-----~~~~~~~~~r~~l~~ll~~~g~~L~Dv~R~~~P~~ 235 (482)
|.+|++.|.+++.++...+.|+||+||||+.+.+.|.+.. ..++...+ +.+++.++ +.| |.|+||..+|..
T Consensus 120 r~~~~~~l~~~~~~~~~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~l~-~~~--l~D~~~~~~p~~ 195 (257)
T 2voa_A 120 KLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPDKLKNHVCFHEDA-RRAYKKIL-ELG--FVDVLRKIHPNE 195 (257)
T ss_dssp HHHHHHHHHHHHHHHCCTTSCEEEEEECSCCCSGGGBSCGGGCTTSTTTCHHH-HHHHHHHH-TTT--CEEHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeeCCCCCchhhccChhHhCCCCCCCHHH-HHHHHHHH-HcC--cEeeehhhCCCC
Confidence 8888888888887764567899999999999887776542 12344444 66788877 444 999999999985
Q ss_pred CCccccCCC-CCCCcccCCcceEEEEEEcCCCccccccccccccccceeeeeeeeeccccCCCCCCCCccCCCCcCCCCC
Q 011576 236 REAYTCWPS-NTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 314 (482)
Q Consensus 236 ~~~yT~~s~-~~~~~~~n~gsRID~Ilvs~~~l~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~S 314 (482)
. .||||+. +..++..+.+.||||||+++.+.. .+.++.|....+.+ ..+|
T Consensus 196 ~-~~T~~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~~~~~~v~~~~~~~---------------~~~S 246 (257)
T 2voa_A 196 R-IYTFYDYRVKGAIERGLGWRGDAILATPPLAE-------------RCVDCYADIKPRLA---------------EKPS 246 (257)
T ss_dssp C-CCSBCCTTSTTTTTTTCCBCCEEEEECHHHHT-------------TEEEEEECCHHHHS---------------SSCC
T ss_pred C-CcceeccccCCceecCceEEEEEEEECHHHHh-------------hhheeEeehhhccC---------------CCCC
Confidence 4 5999998 766665677899999999987633 57888887642211 2689
Q ss_pred CCcceEEEEec
Q 011576 315 DHAPVYMCLGE 325 (482)
Q Consensus 315 DH~PV~~~l~~ 325 (482)
||+||+++|.+
T Consensus 247 DH~pv~~~l~~ 257 (257)
T 2voa_A 247 DHLPLVAVFDV 257 (257)
T ss_dssp SBCCEEEEECC
T ss_pred CccCEEEEEeC
Confidence 99999999863
No 4
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=100.00 E-value=5.6e-37 Score=296.51 Aligned_cols=251 Identities=29% Similarity=0.475 Sum_probs=190.3
Q ss_pred CEEEEeeccCccccccccchHHHHHhhcCCcEEEEecccccccchhhHHHhhcCCcEEEeecccCCCCCCcceEEEEEEe
Q 011576 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (482)
Q Consensus 1 mrIlTwNVnGl~~~~~r~~~l~~~L~~~~pDII~LQEtk~~~~~l~~~l~~~~gY~~~~s~~~~~~~g~~g~~GVAIlsR 80 (482)
|||+||||+|++...++ .+.++|+..+|||||||||+.....+...+....||..++... +..++.|||||+|
T Consensus 2 l~v~t~Ni~~~~~~~~~--~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~-----~~~~~~G~ailsr 74 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKK--GFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHCA-----EKRGYSGVAVYSK 74 (259)
T ss_dssp EEEEEEECSSHHHHHHT--THHHHHHHTTCSEEEEECCCCCGGGCCHHHHSGGGCEEEEECC-----SSTTCCCEEEEES
T ss_pred cEEEEEeeccHHHHHHh--HHHHHHHhcCCCEEEEEEecchhhccChhhccccCCeEEEecc-----CCCCcceEEEEEe
Confidence 69999999999876554 4999999999999999999976555543344567998777643 3345679999999
Q ss_pred ccCCCCCcccccceeeeecccccccccCcccccCccccccccccccCCCCCEEEEeeCeEEEEEEEecCCCCCChhhHHH
Q 011576 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (482)
Q Consensus 81 ~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eGR~i~v~~~~~~l~nvY~P~~~~~~~~r~~~ 160 (482)
.++ ..+..++.. ...+.+||++.++++.+.|+|+|+|+... ..++..+
T Consensus 75 ~~~----------~~~~~~~~~---------------------~~~~~~~r~~~~~~~~~~v~~~h~~~~~~-~~~r~~~ 122 (259)
T 2jc5_A 75 RKP----------DNVQIGMGI---------------------EEFDREGRFVRCDFGRLSVISLYLPSGSS-AEERQQV 122 (259)
T ss_dssp SCC----------SEEEESCSC---------------------HHHHTTCCEEEEEETTEEEEEEECCCCTT-CHHHHHH
T ss_pred cCc----------eeEEeCCCC---------------------CccCCCCeEEEEEcCCEEEEEEeccCCCC-CcHHHHH
Confidence 842 222222210 12456899999999999999999999875 3567777
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEecCCCCCCCcccccCCC-----CCCCchHHHHHHHHHHHHcCCCccccccccCCCC
Q 011576 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235 (482)
Q Consensus 161 k~~fl~~L~~~i~~l~~~~~pvII~GDFN~~~~~~D~~~~~-----~~~~~~~~r~~l~~ll~~~g~~L~Dv~R~~~P~~ 235 (482)
+.++++.|.+.+.++...+.|+||+||||+.+...|.+... .++.+.+ +.++..++.+.+ |.|+||..+|..
T Consensus 123 ~~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~--l~d~~~~~~~~~ 199 (259)
T 2jc5_A 123 KYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEE-REWIGKVIHKLG--WTDMWRTLYPDV 199 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEEECCCCCSGGGBSCSTTCTTSTTSCHHH-HHHHHHHHHTTC--CEEHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCchhhccChhhcCCCCCcCHHH-HHHHHHHhccCC--cEEeeHhhCCCC
Confidence 88899999888887655689999999999998877754321 2344444 667888886665 999999999976
Q ss_pred CCccccCCCCCCCcccCCcceEEEEEEcCCCccccccccccccccceeeeeeeeeccccCCCCCCCCccCCCCcCCCCCC
Q 011576 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 315 (482)
Q Consensus 236 ~~~yT~~s~~~~~~~~n~gsRID~Ilvs~~~l~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~SD 315 (482)
.+ ||||+.+...+..+.+.||||||+++.+.. .+.++.|... ..+||
T Consensus 200 ~~-~T~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~~~~~~v~~~-------------------~~~SD 246 (259)
T 2jc5_A 200 PG-YTWWSNRGQAYAKDVGWRIDYQMVTPELAA-------------KAVSAHVYKD-------------------EKFSD 246 (259)
T ss_dssp CC-CCEESCSSHHHHTTCEECCEEEEECHHHHT-------------TEEEEEECCS-------------------SCCSS
T ss_pred CC-ccEECCcCCCccCCCeeEEEEEEECHHHHh-------------HHhheeecCC-------------------CCCCC
Confidence 65 999998766555567899999999987632 5888888742 26899
Q ss_pred CcceEEEEecC
Q 011576 316 HAPVYMCLGEV 326 (482)
Q Consensus 316 H~PV~~~l~~~ 326 (482)
|+||+++|.+.
T Consensus 247 H~pv~~~l~~~ 257 (259)
T 2jc5_A 247 HAPLVVEYDYA 257 (259)
T ss_dssp BCCEEEEESCC
T ss_pred cccEEEEEecc
Confidence 99999999764
No 5
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=100.00 E-value=1.2e-36 Score=293.60 Aligned_cols=251 Identities=29% Similarity=0.441 Sum_probs=187.1
Q ss_pred CEEEEeeccCccccccccchHHHHHhhcCCcEEEEecccccccchhhHHHhhcCCcEEEeecccCCCCCCcceEEEEEEe
Q 011576 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (482)
Q Consensus 1 mrIlTwNVnGl~~~~~r~~~l~~~L~~~~pDII~LQEtk~~~~~l~~~l~~~~gY~~~~s~~~~~~~g~~g~~GVAIlsR 80 (482)
|||+||||+|++.+.++ +.++|++.+|||||||||+..........+...||..++.. ..++.|||||+|
T Consensus 1 lrv~t~Nv~~~~~~~~~---i~~~i~~~~~DIv~LQE~~~~~~~~~~~~~~~~gy~~~~~~-------~~~~~G~ailsr 70 (256)
T 2jc4_A 1 MKITTWNVNSLNVRLPQ---VQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSG-------QKTYNGVAIVSR 70 (256)
T ss_dssp CEEEEEECSCHHHHHHH---HHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCEEEEEC-------CSSSCCEEEEES
T ss_pred CEEEEEEcCCcHHHHHH---HHHHHHhcCCCEEEEEeeccchhcCCHhHHhhcCCeEEECC-------CCcceEEEEEEC
Confidence 79999999999876553 99999999999999999997654443334456799877642 234569999999
Q ss_pred ccCCCCCcccccceeeeecccccccccCcccccCccccccccccccCCCCCEEEEeeCeEEEEEEEecCCCCCChhhHHH
Q 011576 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (482)
Q Consensus 81 ~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eGR~i~v~~~~~~l~nvY~P~~~~~~~~r~~~ 160 (482)
.++ ..+..++.+ ...+.++|++.++++.+.|+|+|+|+....+.++..+
T Consensus 71 ~~~----------~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~ 119 (256)
T 2jc4_A 71 SVP----------QDVHFGLPA---------------------LPDDPQRRVIAATVSGVRVINVYCVNGEALDSPKFKY 119 (256)
T ss_dssp SCC----------EEEEESCTT---------------------STTCCSCCEEEEEETTEEEEEEECCCCCSTTSHHHHH
T ss_pred CCh----------HHheecCCC---------------------CccCCcCcEEEEEeCCEEEEEEEecCCCCCCcHhHHH
Confidence 842 122222211 0135688999888899999999999987544456677
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEecCCCCCCCcccccC-----CCCCCCchHHHHHHHHHHHHcCCCccccccccCCCC
Q 011576 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 235 (482)
Q Consensus 161 k~~fl~~L~~~i~~l~~~~~pvII~GDFN~~~~~~D~~~-----~~~~~~~~~~r~~l~~ll~~~g~~L~Dv~R~~~P~~ 235 (482)
|.++++.|.+.+.++...+.|+||+||||+.+...|... ...++.+.+ +.+++.++ +.| |.|+||..+|..
T Consensus 120 r~~~~~~l~~~~~~~~~~~~~~il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~l~-~~~--l~D~~~~~~~~~ 195 (256)
T 2jc4_A 120 KEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVE-RQWFQNLL-DLG--LTDSLRQVHPEG 195 (256)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSEEEEEECCCCCSGGGBSSGGGGTTCTTSCHHH-HHHHHHHH-TTT--CEEHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeECCCCCchhhccChhHhCCCCCcCHHH-HHHHHHHH-hcC--cEEhhhhhCCCC
Confidence 888999998888877667899999999999888766532 123444444 66777776 444 999999999875
Q ss_pred CCccccCCCCCCCcccCCcceEEEEEEcCCCccccccccccccccceeeeeeeeeccccCCCCCCCCccCCCCcCCCCCC
Q 011576 236 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 315 (482)
Q Consensus 236 ~~~yT~~s~~~~~~~~n~gsRID~Ilvs~~~l~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~SD 315 (482)
. .||||+.+++.++.+.+.||||||+++.+.. .|.++.|....+. ...+||
T Consensus 196 ~-~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~~~~~~v~~~~~~---------------~~~~SD 246 (256)
T 2jc4_A 196 A-FYTWFDYRGAMFQRKLGLRIDHILVSPAMAA-------------ALKDVRVDLETRA---------------LERPSD 246 (256)
T ss_dssp C-CCCBCCTTTTHHHHTCCBCCEEEEECHHHHT-------------TEEEEEECHHHHT---------------SSSCCS
T ss_pred C-ceeeEcCCCCccccCcEEEEEEEEECHHHHh-------------heeEEEEEhhccc---------------CCCCCC
Confidence 4 5999998877665677899999999987633 5888888764221 126899
Q ss_pred CcceEEEEec
Q 011576 316 HAPVYMCLGE 325 (482)
Q Consensus 316 H~PV~~~l~~ 325 (482)
|+||+++|.+
T Consensus 247 H~pv~~~l~l 256 (256)
T 2jc4_A 247 HAPVTAEFDW 256 (256)
T ss_dssp BCCEEEEECC
T ss_pred cccEEEEecC
Confidence 9999999863
No 6
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=100.00 E-value=1.2e-36 Score=306.40 Aligned_cols=250 Identities=29% Similarity=0.475 Sum_probs=180.3
Q ss_pred CEEEEeeccCccccccccchHHHHHhhcCCcEEEEecccccccchhhHHHhhcCC-cEEEeecccCCCCCCcceEEEEEE
Q 011576 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFFSCTRTSDKGRTGYSGVATFC 79 (482)
Q Consensus 1 mrIlTwNVnGl~~~~~r~~~l~~~L~~~~pDII~LQEtk~~~~~l~~~l~~~~gY-~~~~s~~~~~~~g~~g~~GVAIls 79 (482)
|||+||||+|++...++ .+.++|+.++|||||||||+.....+...+....|| +.++... ....|+.|||||+
T Consensus 62 lrv~t~Nv~g~~~~~~~--~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~----~~~~g~~Gvails 135 (318)
T 1hd7_A 62 LKICSWNVDGLRAWIKK--KGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAP----SDKEGYSGVGLLS 135 (318)
T ss_dssp EEEEEEECSSHHHHHHT--THHHHHHHHCCSEEEEECCCCCC-----------CCCEEEEECC---------CCCEEEEE
T ss_pred eEEEEEecCcchhhhhh--hHHHHHHhhCCCEEEEEEccCchhhccHHHHhcCCCceEEEecC----CCCCccceEEEEE
Confidence 69999999999876554 399999999999999999987654443334446789 5666542 1245667999999
Q ss_pred eccCCCCCcccccceeeeecccccccccCcccccCccccccccccccCCCCCEEEEeeCeEEEEEEEecCCCCCChhhHH
Q 011576 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (482)
Q Consensus 80 R~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eGR~i~v~~~~~~l~nvY~P~~~~~~~~r~~ 159 (482)
|.+ ++.+..++.. ...+.+||++.++++.+.|+|+|+|+... ..++.+
T Consensus 136 r~~----------~~~~~~~~~~---------------------~~~~~~~r~l~~~~~~~~v~~vh~p~~~~-~~~~~~ 183 (318)
T 1hd7_A 136 RQC----------PLKVSYGIGD---------------------EEHDQEGRVIVAEFDSFVLVTAYVPNAGR-GLVRLE 183 (318)
T ss_dssp SSC----------CSEEEESCSC---------------------GGGSSSSCEEEEECSSCEEEEEECCCCCG-GGTTHH
T ss_pred cCC----------ceeEEecCCC---------------------cccCCCCcEEEEEcCCEEEEEEEcCCCCC-ccccHH
Confidence 984 2333332210 12467899999999999999999998764 235667
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCCCcccccC-----CCCCCCchHHHHHH-HHHHHHcCCCccccccccCC
Q 011576 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWF-RSMLVESGGSFFDVFRSKHP 233 (482)
Q Consensus 160 ~k~~fl~~L~~~i~~l~~~~~pvII~GDFN~~~~~~D~~~-----~~~~~~~~~~r~~l-~~ll~~~g~~L~Dv~R~~~P 233 (482)
+|.+|++.|..++..+.. ..|+||+||||+.+..+|.+. ...+|...+ +.+| ..++.. + |.|+||..+|
T Consensus 184 ~r~~~~~~l~~~l~~~~~-~~pvIl~GDFN~~~~~~D~~~~~~~~~~~g~~~~~-~~~~~~~ll~~-~--l~D~~r~~~p 258 (318)
T 1hd7_A 184 YRQRWDEAFRKFLKGLAS-RKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELLQAV-P--LADSFRHLYP 258 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH-HSCEEEEEECSCCCSGGGBSCHHHHTTSTTSCHHH-HHHHHHHHHHT-T--CEEHHHHHCT
T ss_pred HHHHHHHHHHHHHHhccc-CCCEEEEeeCCCCChhhhccChhhcCCCCCcCHHH-HHHHHHHHhhC-C--CEEeehhhCC
Confidence 788899988888877643 389999999999988777542 224555544 6778 888754 5 9999999999
Q ss_pred CCCCccccCCCCCCCcccCCcceEEEEEEcCCCccccccccccccccceeeeeeeeeccccCCCCCCCCccCCCCcCCCC
Q 011576 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEG 313 (482)
Q Consensus 234 ~~~~~yT~~s~~~~~~~~n~gsRID~Ilvs~~~l~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~ 313 (482)
...+.||||+.+...+..+.+.||||||+++.+.. .|.++.|... ..+
T Consensus 259 ~~~~~~T~~~~~~~~~~~~~~~rID~il~s~~~~~-------------~v~~~~v~~~-------------------~~~ 306 (318)
T 1hd7_A 259 NTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLP-------------ALCDSKIRSK-------------------ALG 306 (318)
T ss_dssp TCTTCCSBCCSGGGHHHHTCCBCCEEEEECGGGGG-------------GEEEEEECTT-------------------CCS
T ss_pred CCCCCcceECCcCCCcccCCceEEEEEEECHHHHh-------------hhhheEeecc-------------------CCC
Confidence 75545999998876655677899999999988743 5788888753 257
Q ss_pred CCCcceEEEEec
Q 011576 314 SDHAPVYMCLGE 325 (482)
Q Consensus 314 SDH~PV~~~l~~ 325 (482)
|||+||+++|.+
T Consensus 307 SDH~Pv~~~l~l 318 (318)
T 1hd7_A 307 SDHCPITLYLAL 318 (318)
T ss_dssp SSBCCEEEEECC
T ss_pred CCccCEEEEecC
Confidence 999999999863
No 7
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=100.00 E-value=3e-36 Score=297.14 Aligned_cols=250 Identities=29% Similarity=0.473 Sum_probs=186.4
Q ss_pred CEEEEeeccCccccccccchHHHHHhhcCCcEEEEecccccccchhhHHHhhcCC-cEEEeecccCCCCCCcceEEEEEE
Q 011576 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFFSCTRTSDKGRTGYSGVATFC 79 (482)
Q Consensus 1 mrIlTwNVnGl~~~~~r~~~l~~~L~~~~pDII~LQEtk~~~~~l~~~l~~~~gY-~~~~s~~~~~~~g~~g~~GVAIls 79 (482)
|||+||||+|++...++ .+.++|++.+|||||||||+.....+...+....|| +.++.... ...|+.|||||+
T Consensus 29 l~v~t~Ni~~~~~~~~~--~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~~----~~~g~~Gvails 102 (285)
T 2o3h_A 29 LKIASWNVDGLRAWIKK--KGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPS----DKEGYSGVGLLS 102 (285)
T ss_dssp EEEEEEECSSHHHHHHT--THHHHHHHHCCSEEEEECCCCCTTSCCGGGGGCGGGCEEEEECBC------CCSCCEEEEE
T ss_pred eEEEEEecccChhhhhh--hHHHHHHhcCCCEEEEEEeecchhhccHHHHhccCCcEEEEeccc----CCcccceEEEEE
Confidence 69999999999876554 399999999999999999987654443334446789 55665421 244667999999
Q ss_pred eccCCCCCcccccceeeeecccccccccCcccccCccccccccccccCCCCCEEEEeeCeEEEEEEEecCCCCCChhhHH
Q 011576 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (482)
Q Consensus 80 R~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eGR~i~v~~~~~~l~nvY~P~~~~~~~~r~~ 159 (482)
|.+ ++.+..++.. ...+.+||++.++++.+.|+|+|+|+... ..++.+
T Consensus 103 r~~----------~~~~~~~~~~---------------------~~~~~~~r~l~~~~~~~~v~~~h~p~~~~-~~~~~~ 150 (285)
T 2o3h_A 103 RQC----------PLKVSYGIGD---------------------EEHDQEGRVIVAEFDSFVLVTAYVPNAGR-GLVRLE 150 (285)
T ss_dssp SSC----------CSEEEESCSC---------------------GGGSSBCCEEEEECSSCEEEEEECCCCCG-GGTTHH
T ss_pred ccC----------hHHeeeccCC---------------------cccCCCCcEEEEEeCCEEEEEEEcCCCCC-cchhHH
Confidence 984 2333332210 12467899998898999999999998764 245667
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCCCcccccCCC-----CCCCchHHHHHH-HHHHHHcCCCccccccccCC
Q 011576 160 FKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWF-RSMLVESGGSFFDVFRSKHP 233 (482)
Q Consensus 160 ~k~~fl~~L~~~i~~l~~~~~pvII~GDFN~~~~~~D~~~~~-----~~~~~~~~r~~l-~~ll~~~g~~L~Dv~R~~~P 233 (482)
+|.++++.|.+.++.+. ...|+||+||||+.+..+|.+... .++...+ +.+| ..++.. + |.|+||..+|
T Consensus 151 ~r~~~~~~l~~~l~~~~-~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~g~~~~~-~~~~~~~~l~~-~--l~D~~~~~~~ 225 (285)
T 2o3h_A 151 YRQRWDEAFRKFLKGLA-SRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELLQAV-P--LADSFRHLYP 225 (285)
T ss_dssp HHHHHHHHHHHHHHHHH-TTSCEEEEEECSCCCSGGGBSCTTTCTTSTTSCHHH-HHHHHHHHHHT-T--CEEHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhc-cCCCEEEEEECCCCCchhhccChhhcCCCCCcCHHH-HHHHHHHHhcC-C--CEEEEEecCC
Confidence 78889999988888763 358999999999988877754321 3444444 6778 888864 5 9999999999
Q ss_pred CCCCccccCCCCCCCcccCCcceEEEEEEcCCCccccccccccccccceeeeeeeeeccccCCCCCCCCccCCCCcCCCC
Q 011576 234 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEG 313 (482)
Q Consensus 234 ~~~~~yT~~s~~~~~~~~n~gsRID~Ilvs~~~l~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~ 313 (482)
...+.||||+.+...+..+.+.||||||+++.+.. .|.++.|... ..+
T Consensus 226 ~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~v~~~~v~~~-------------------~~~ 273 (285)
T 2o3h_A 226 NTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLP-------------ALCDSKIRSK-------------------ALG 273 (285)
T ss_dssp TCCSCCSBCCSSTTHHHHTCCBCCEEEEECGGGGG-------------GEEEEEECTT-------------------CCS
T ss_pred CCCCcEeEecCcCCccccCceeEEEEEEECHHHHh-------------hhhheEeecc-------------------CCC
Confidence 75545999998876655667899999999988743 5888888753 257
Q ss_pred CCCcceEEEEec
Q 011576 314 SDHAPVYMCLGE 325 (482)
Q Consensus 314 SDH~PV~~~l~~ 325 (482)
|||+||+++|.+
T Consensus 274 SDH~pv~~~l~l 285 (285)
T 2o3h_A 274 SDHCPITLYLAL 285 (285)
T ss_dssp SSBCCEEEEECC
T ss_pred CCeecEEEEecC
Confidence 999999999863
No 8
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=100.00 E-value=7.1e-36 Score=290.22 Aligned_cols=251 Identities=29% Similarity=0.516 Sum_probs=182.3
Q ss_pred CEEEEeeccCccccccccchHHHHHhhcCCcEEEEecccccccchhhHHHhhcCCcEEEeecccCCCCCCcceEEEEEEe
Q 011576 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (482)
Q Consensus 1 mrIlTwNVnGl~~~~~r~~~l~~~L~~~~pDII~LQEtk~~~~~l~~~l~~~~gY~~~~s~~~~~~~g~~g~~GVAIlsR 80 (482)
|||+||||+|++.+.. .+.++|+..+|||||||||+.....+....+...||..++... .++.|||||+|
T Consensus 1 lrv~t~Nv~~~~~~~~---~i~~~i~~~~~Dii~LQE~~~~~~~~~~~~l~~~gy~~~~~~~-------~~~~G~ailsr 70 (268)
T 1ako_A 1 MKFVSFNINGLRARPH---QLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQ-------KGHYGVALLTK 70 (268)
T ss_dssp CEEEEEECSCGGGCHH---HHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEE-------TTEEEEEEEES
T ss_pred CEEEEEehhHHHHHHH---HHHHHHHHcCCCEEEEEeccCChhhCCHhHhccCCCcEEEeCC-------CCcceEEEEEe
Confidence 7999999999976544 4999999999999999999876554433344557998776532 34579999999
Q ss_pred ccCCCCCcccccceeeeecccccccccCcccccCccccccccccccCCCCCEEEEee----CeEEEEEEEecCCCCCC-h
Q 011576 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH----GHFILFNVYGPRADSED-T 155 (482)
Q Consensus 81 ~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eGR~i~v~~----~~~~l~nvY~P~~~~~~-~ 155 (482)
.+ +..+..++.+ ...+..++++.+++ +.+.|+|+|+|+..... +
T Consensus 71 ~~----------~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~ 119 (268)
T 1ako_A 71 ET----------PIAVRRGFPG---------------------DDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHP 119 (268)
T ss_dssp SC----------CSEEEESSTT---------------------CCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCT
T ss_pred cC----------cceeeeCCCC---------------------cccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccc
Confidence 84 2233322210 01134567777665 47999999999876422 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCCCcccccC-----------CCCCCCchHHHHHHHHHHHHcCCCc
Q 011576 156 VRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCD-----------AGPDFAKNEFRIWFRSMLVESGGSF 224 (482)
Q Consensus 156 ~r~~~k~~fl~~L~~~i~~l~~~~~pvII~GDFN~~~~~~D~~~-----------~~~~~~~~~~r~~l~~ll~~~g~~L 224 (482)
++...|..+++.|.+.++.+...+.|+||+||||+.+.+.|... ...++.+.+ +.+++.++ +.| |
T Consensus 120 ~~~~~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~l~-~~g--l 195 (268)
T 1ako_A 120 IKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEE-REWMDRLM-SWG--L 195 (268)
T ss_dssp THHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHH-HHHHHHHH-HTT--E
T ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCCEEEEeECCCCCchhcccCcccChhhhccCCCcCcCHHH-HHHHHHHh-cCC--C
Confidence 35567788888888888776456789999999999988776532 223455544 66677665 455 9
Q ss_pred cccccccCCCCCCccccCCCCCCCcccCCcceEEEEEEcCCCccccccccccccccceeeeeeeeeccccCCCCCCCCcc
Q 011576 225 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWK 304 (482)
Q Consensus 225 ~Dv~R~~~P~~~~~yT~~s~~~~~~~~n~gsRID~Ilvs~~~l~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~ 304 (482)
.|+||..+|...+.||||+.+..+++.+.+.||||||+++.+.. .+.++.|....+.+
T Consensus 196 ~D~~~~~~~~~~~~~T~~~~~~~~~~~~~~~riD~il~s~~~~~-------------~~~~~~i~~~~~~~--------- 253 (268)
T 1ako_A 196 VDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAE-------------CCVETGIDYEIRSM--------- 253 (268)
T ss_dssp EEHHHHHSTTCCSCCSBCCTTTTHHHHTCCBCCEEEEEEHHHHT-------------TEEEEEECHHHHTS---------
T ss_pred EEeEhhhCCCCCCCeeEeCCcCCccccCceEEEEEEEeCHHHHH-------------HHHhceechhhcCC---------
Confidence 99999999986666999999877766677899999999987643 56788887542211
Q ss_pred CCCCcCCCCCCCcceEEEEe
Q 011576 305 GGMSTRLEGSDHAPVYMCLG 324 (482)
Q Consensus 305 ~~~~~~~~~SDH~PV~~~l~ 324 (482)
..+|||+||+++|.
T Consensus 254 ------~~~SDH~pv~~~l~ 267 (268)
T 1ako_A 254 ------EKPSDHAPVWATFR 267 (268)
T ss_dssp ------SSCCSBCCEEEEEC
T ss_pred ------CCCCCcccEEEEcc
Confidence 26799999999985
No 9
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=100.00 E-value=1.3e-34 Score=276.01 Aligned_cols=227 Identities=22% Similarity=0.442 Sum_probs=163.5
Q ss_pred CEEEEeeccCccccccccchHHHHHhhcCCcEEEEecccccccchhhHHHhhcCCcEEEeecccCCCCCCcceEEEEEEe
Q 011576 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (482)
Q Consensus 1 mrIlTwNVnGl~~~~~r~~~l~~~L~~~~pDII~LQEtk~~~~~l~~~l~~~~gY~~~~s~~~~~~~g~~g~~GVAIlsR 80 (482)
|||+||||+|++.+.++ ..+.++|++.+|||||||||+.....+.. +...||..++... +..++.|||||+|
T Consensus 8 lri~t~Nv~g~~~~~~~-~~~~~~i~~~~~DIv~LQE~~~~~~~~~~--l~~~~y~~~~~~~-----~~~~~~Gvail~r 79 (238)
T 1vyb_A 8 ITILTLNINGLNSAIKR-HRLASWIKSQDPSVCCIQETHLTCRDTHR--LKIKGWRKIYQAN-----GKQKKAGVAILVS 79 (238)
T ss_dssp EEEEEEECSCCCSHHHH-HHHHHHHHHHCCSEEEEECCCCCTTSGGG--CCCTTCCEEEEEC-----CSSSSCCEEEEEC
T ss_pred ceEEEEecccCCchhhH-HHHHHHHHHcCCCEEEEecccCCCCCchh--HhhCCCCeEEEcc-----CCCCCceEEEEEe
Confidence 69999999999876543 35999999999999999999876544432 2346898754332 1223459999999
Q ss_pred ccCCCCCcccccceeeeecccccccccCcccccCccccccccccccCCCCCEEEEee----CeEEEEEEEecCCCCCChh
Q 011576 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH----GHFILFNVYGPRADSEDTV 156 (482)
Q Consensus 81 ~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eGR~i~v~~----~~~~l~nvY~P~~~~~~~~ 156 (482)
.++ |+.+.. ...|.++|++.+++ ..+.|+|+|+|+... +
T Consensus 80 ~~~---------~~~~~~-------------------------~~~~~~~r~i~~~~~~~~~~~~v~~~y~p~~~~---~ 122 (238)
T 1vyb_A 80 DKT---------DFKPTK-------------------------IKRDKEGHYIMVKGSIQQEELTILNIYAPNTGA---P 122 (238)
T ss_dssp TTC---------CCEEEE-------------------------EEECTTSSEEEEEEEETTEEEEEEEEECCSSSH---H
T ss_pred CCC---------Cccccc-------------------------eeEcCCCcEEEEEEEeCCCcEEEEEEecCCCCc---H
Confidence 853 332211 01356889887764 479999999998653 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCccccccccCCCCC
Q 011576 157 RIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 236 (482)
Q Consensus 157 r~~~k~~fl~~L~~~i~~l~~~~~pvII~GDFN~~~~~~D~~~~~~~~~~~~~r~~l~~ll~~~g~~L~Dv~R~~~P~~~ 236 (482)
++++.+.+.+.+. .+.|+||+||||+.+..+|... .++...+ +.+|..++.+.+ |.|+||..+|...
T Consensus 123 ------~~~~~l~~~l~~~--~~~~~Il~GDFN~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~--l~d~~~~~~~~~~ 189 (238)
T 1vyb_A 123 ------RFIKQVLSDLQRD--LDSHTLIMGDFNTPLSTLDRST--RQKVNKD-TQELNSALHQAD--LIDIYRTLHPKST 189 (238)
T ss_dssp ------HHHHHHHHHTTTT--CCTTEEEEEECSSCSSGGGBTT--CCCCCHH-HHHHHHHHHHTT--EEEHHHHHCTTCC
T ss_pred ------HHHHHHHHHHHhc--cCCCEEEEccCCCCCCccccCC--CCCCcHH-HHHHHHHHhhCC--CEEhhHhhCCCCC
Confidence 2444444444322 3689999999999888777643 2344444 667888887776 9999999999755
Q ss_pred CccccCCCCCCCcccCCcceEEEEEEcCCCccccccccccccccceeeeeeeeeccccCCCCCCCCccCCCCcCCCCCCC
Q 011576 237 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDH 316 (482)
Q Consensus 237 ~~yT~~s~~~~~~~~n~gsRID~Ilvs~~~l~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~SDH 316 (482)
.||||+.+... +.||||||+++.+.. .+.++.|... .+|||
T Consensus 190 -~~T~~~~~~~~-----~~rID~i~~s~~~~~-------------~~~~~~v~~~--------------------~~SDH 230 (238)
T 1vyb_A 190 -EYTFFSAPHHT-----YSKIDHIVGSKALLS-------------KCKRTEIITN--------------------YLSDH 230 (238)
T ss_dssp -CCSEEETTTTE-----EECCEEEEEEGGGGG-------------GEEEEEEECC--------------------SSSSS
T ss_pred -ceeEEcCCCCc-----ccceEEEEeCHHHHh-------------hhhhceeecC--------------------CCCCc
Confidence 49999876433 679999999998743 5888888753 68999
Q ss_pred cceEEEEe
Q 011576 317 APVYMCLG 324 (482)
Q Consensus 317 ~PV~~~l~ 324 (482)
+||+++|+
T Consensus 231 ~pv~~~l~ 238 (238)
T 1vyb_A 231 SAIKLELR 238 (238)
T ss_dssp CEEEEEEC
T ss_pred ccEEEEeC
Confidence 99999984
No 10
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.97 E-value=2.5e-31 Score=258.16 Aligned_cols=212 Identities=17% Similarity=0.156 Sum_probs=143.5
Q ss_pred CEEEEeeccCccccccccchHHHHHhhcCCcEEEEecccccccchhhHHHhhcCCcEEEeecccCCCCCCcceEEEEEEe
Q 011576 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (482)
Q Consensus 1 mrIlTwNVnGl~~~~~r~~~l~~~L~~~~pDII~LQEtk~~~~~l~~~l~~~~gY~~~~s~~~~~~~g~~g~~GVAIlsR 80 (482)
|||+||||||++.+.++ +.++|++.+|||||||||+. ..||. +. +. ++.||||+++
T Consensus 8 mki~s~Nvn~~r~~~~~---l~~~l~~~~~DIl~LQEt~~-----------~~gy~--~~-------~~-~~~gvail~~ 63 (240)
T 2ei9_A 8 LRIGQINLGGAEDATRE---LPSIARDLGLDIVLVQEQYS-----------MVGFL--AQ-------CG-AHPKAGVYIR 63 (240)
T ss_dssp EEEEEEECTTCHHHHHT---HHHHHHHHTCSEEEEESCCT-----------TSSSE--EC-------CS-SSCSEEEEES
T ss_pred ceEEEEecCccHHHHHH---HHHHHHHcCCCEEEeecceE-----------cCCce--Ee-------cc-CCCCEEEEEe
Confidence 69999999999987765 99999999999999999972 13776 32 11 2358999998
Q ss_pred ccCCCCCcccccceeeeecccccccccCcccccCccccccccccccCCCCCEEEEeeCeEEEEEEEecCCCCCChhhHHH
Q 011576 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (482)
Q Consensus 81 ~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eGR~i~v~~~~~~l~nvY~P~~~~~~~~r~~~ 160 (482)
.+. .|+....++ .+..++++.++++.++|+|+|+|++.. .++
T Consensus 64 ~~~--------~~~~~~~~~-------------------------~~~~~~~i~i~~~~i~i~svY~P~~~~-----~~~ 105 (240)
T 2ei9_A 64 NRV--------LPCAVLHHL-------------------------SSTHITVVHIGGWDLYMVSAYFQYSDP-----IDP 105 (240)
T ss_dssp STT--------SCEEECGGG-------------------------CCSSEEEEEETTTTEEEEEEECCTTSC-----SHH
T ss_pred cCC--------cceeeeccc-------------------------CCCCEEEEEEeeccEEEEEEEcCCCCc-----hhH
Confidence 731 243221111 234566777877889999999999865 245
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEecCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCcccccc--ccCCCCCCc
Q 011576 161 KLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFR--SKHPERREA 238 (482)
Q Consensus 161 k~~fl~~L~~~i~~l~~~~~pvII~GDFN~~~~~~D~~~~~~~~~~~~~r~~l~~ll~~~g~~L~Dv~R--~~~P~~~~~ 238 (482)
+.++++.|...+ .+.++|||||||++++.++.......+.+.+ +.+....|. + +.|.+| ..+|... .
T Consensus 106 ~~~~l~~l~~~~-----~~~~~Ii~GDfN~~~~~w~~~~~~~~~~~~~-r~~~~~~l~--~--~~d~~~l~~~~~~~~-~ 174 (240)
T 2ei9_A 106 YLHRLGNILDRL-----RGARVVICADTNAHSPLWHSLPRHYVGRGQE-VADRRAKME--D--FIGARRLVVHNADGH-L 174 (240)
T ss_dssp HHHHHHHHHHHT-----TTSCEEEEEECCCCCGGGTCCHHHHSSSCHH-HHHHHHHHH--H--HHHHTTCEECCCTTC-C
T ss_pred HHHHHHHHHHhc-----CCCcEEEEEecccccccccCCCCCCCCcchh-hHHHHHHHH--H--HHHhcCCEecCCCCC-C
Confidence 566666554322 3579999999999876443211001233333 334444442 2 888888 4477533 5
Q ss_pred cccCCCCCCCcccCCcceEEEEEEcCCCccccccccccccccceeeeeeeeeccccCCCCCCCCccCCCCcCCCCCCCcc
Q 011576 239 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAP 318 (482)
Q Consensus 239 yT~~s~~~~~~~~n~gsRID~Ilvs~~~l~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~SDH~P 318 (482)
||||+.+. ++||||+|+++.+. . .++.|.. ..+|||+|
T Consensus 175 ~T~~s~~~-------~~rID~~l~s~~l~--------------~-~~~~i~~--------------------~~~SDH~P 212 (240)
T 2ei9_A 175 PTFSTANG-------ESYVDVTLSTRGVR--------------V-SEWRVTN--------------------ESSSDHRL 212 (240)
T ss_dssp CSEEETTE-------EECCEEEEECTTCC--------------E-EEEEECS--------------------CCSSSBCC
T ss_pred ceEeCCCC-------ceEEEEEEecCccc--------------c-CCeEECC--------------------CCCCCccc
Confidence 99998642 68999999999863 2 4555542 16899999
Q ss_pred eEEEEecCC
Q 011576 319 VYMCLGEVP 327 (482)
Q Consensus 319 V~~~l~~~~ 327 (482)
|.++|...+
T Consensus 213 v~~~l~~~~ 221 (240)
T 2ei9_A 213 IVFGVGGGT 221 (240)
T ss_dssp EEEEEEC--
T ss_pred EEEEECCCC
Confidence 999998754
No 11
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.96 E-value=6.3e-29 Score=240.01 Aligned_cols=222 Identities=15% Similarity=0.131 Sum_probs=140.5
Q ss_pred CEEEEeeccCccccccccchHHHHHhhcCCcEEEEecccccccchhhHHHhhcCCcEEEeecccCCCCCCcceEEEEEEe
Q 011576 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (482)
Q Consensus 1 mrIlTwNVnGl~~~~~r~~~l~~~L~~~~pDII~LQEtk~~~~~l~~~l~~~~gY~~~~s~~~~~~~g~~g~~GVAIlsR 80 (482)
|||+||||+|++....+ +.++|++.+|||||||||+....... ....||..++... ...++.|||||++
T Consensus 20 lri~s~Nv~~~~~~~~~---l~~~i~~~~~DIv~lQE~~~~~~~~~---~~~~gy~~~~~~~-----~~~~~~GvaIl~~ 88 (245)
T 1wdu_A 20 YRVLQANLQRKKLATAE---LAIEAATRKAAIALIQEPYVGGAKSM---KGFRGVRVFQSTA-----QGDGTVKAAIAVF 88 (245)
T ss_dssp EEEEEEECTTCHHHHHH---HHHHHHHHTCSEEEEESCCC---------CCCSSCEEEECCC-----CTTCCCCEEEEEC
T ss_pred eeeeeeeccccHHHHHH---HHHHHhhcCCCEEEEEcccccCCccc---cCCCcceEecccc-----ccCCCCCeEEEEE
Confidence 69999999999875543 99999999999999999997643322 1245787655321 2234569999997
Q ss_pred ccCCCCCcccccceeeeecccccccccCcccccCccccccccccccCCCC-CEEEEe--eCeEEEEEEEecCCCCCChhh
Q 011576 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEG-RCVITD--HGHFILFNVYGPRADSEDTVR 157 (482)
Q Consensus 81 ~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eG-R~i~v~--~~~~~l~nvY~P~~~~~~~~r 157 (482)
.+ ++.+.. +. ..+..+ .++.+. .+.+.|+|+|+|+....
T Consensus 89 ~~----------~~~~~~-~~-----------------------~~~~~~~~~~~i~~~~~~~~v~~vy~p~~~~~---- 130 (245)
T 1wdu_A 89 DH----------DLDVIQ-YP-----------------------QLTTNNIVVVGIRTRAWEITLVSYYFEPDKPI---- 130 (245)
T ss_dssp CS----------SCEEEE-CT-----------------------TTCCSSEEEEEEECSSCEEEEEEEECCTTSCS----
T ss_pred CC----------CcceEE-ec-----------------------ccccCCEEEEEEEcCCCcEEEEEEEeCCCCCH----
Confidence 52 222211 10 011122 222333 34799999999987531
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 011576 158 IQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 237 (482)
Q Consensus 158 ~~~k~~fl~~L~~~i~~l~~~~~pvII~GDFN~~~~~~D~~~~~~~~~~~~~r~~l~~ll~~~g~~L~Dv~R~~~P~~~~ 237 (482)
..|++.|...++.+ ...++||+||||+.+..++... ...+ +.+|.+++.+.+ | +..+|. +
T Consensus 131 ----~~~~~~l~~~~~~~--~~~~~Ii~GDfN~~~~~~~~~~-----~~~~-~~~l~~~~~~~~--l----~~~~~~--~ 190 (245)
T 1wdu_A 131 ----ESYLEQIKRVERKM--GPKRLIFGGDANAKSTWWGSKE-----DDAR-GDQLMGTLGELG--L----HILNEG--D 190 (245)
T ss_dssp ----HHHHHHHHHHHHTT--CSSSEEEEEECCCCCGGGTCSS-----CCHH-HHHHHHHHHHHT--C----EECCCS--C
T ss_pred ----HHHHHHHHHHHHHh--CCCcEEEEeccccCcccCCCCC-----cCcc-hHHHHHHHHHCC--c----EEecCC--C
Confidence 23555555554432 4579999999999876544211 1222 456777776665 4 344553 3
Q ss_pred ccccCCCCCCCcccCCcceEEEEEEcCCCccccccccccccccceeeeeeeeeccccCCCCCCCCccCCCCcCCCCCCCc
Q 011576 238 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHA 317 (482)
Q Consensus 238 ~yT~~s~~~~~~~~n~gsRID~Ilvs~~~l~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~SDH~ 317 (482)
.||||+.+++. +.+.||||||+++.+.. .|.++.|... ..+|||+
T Consensus 191 ~~T~~~~~~~~---~~~~rID~i~~s~~~~~-------------~v~~~~v~~~-------------------~~~SDH~ 235 (245)
T 1wdu_A 191 VPTFDTIRGGK---RYQSRVDVTFCTEDMLD-------------LIDGWRVDED-------------------LVSSDHN 235 (245)
T ss_dssp CCSEEC--------CCEECCEEEEECGGGBT-------------TEEEEEECTT-------------------SSSSSBC
T ss_pred CCcEECCCCCC---CCCCEEEEEEeChHHHh-------------hccceEEcCC-------------------CCCCCcc
Confidence 59999886532 34789999999988754 6788888742 2789999
Q ss_pred ceEEEEecC
Q 011576 318 PVYMCLGEV 326 (482)
Q Consensus 318 PV~~~l~~~ 326 (482)
||+++|.+.
T Consensus 236 Pv~~~l~l~ 244 (245)
T 1wdu_A 236 GMVFNIRLQ 244 (245)
T ss_dssp CEEEEECCC
T ss_pred cEEEEEEeC
Confidence 999999753
No 12
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.96 E-value=2e-28 Score=251.62 Aligned_cols=231 Identities=15% Similarity=0.189 Sum_probs=143.6
Q ss_pred CEEEEeeccCccc--cccccchHHHHHhhcCCcEEEEecccccccchhhHHHhhcCCcEEEeecccCCCCCCcceEEEEE
Q 011576 1 MKIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (482)
Q Consensus 1 mrIlTwNVnGl~~--~~~r~~~l~~~L~~~~pDII~LQEtk~~~~~l~~~l~~~~gY~~~~s~~~~~~~g~~g~~GVAIl 78 (482)
|||+||||+|+.. ...|...|+++|+.++||||||||+... .+........+|..++. +..+++|+|||
T Consensus 120 lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~--~~~~l~~~~~~y~~~~~-------~~~~~~G~aIl 190 (362)
T 4gew_A 120 VSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDR--DLAPIDKLQSLYKIYYS-------NKGCQYYTAIL 190 (362)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECST--TCHHHHGGGGTEEEEES-------STTSSSEEEEE
T ss_pred EEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEcCChh--HhHHHHHhcCCceEEeC-------CCCCCceEEEE
Confidence 7999999999853 3344456999999999999999999642 22211123345554443 23345699999
Q ss_pred EeccCCCCCcccccceeeeecccccccccCcccccCccccccccccccCCCCCE-EEE--ee--CeEEEEEEEecCCCCC
Q 011576 79 CRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRC-VIT--DH--GHFILFNVYGPRADSE 153 (482)
Q Consensus 79 sR~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eGR~-i~v--~~--~~~~l~nvY~P~~~~~ 153 (482)
+|+++ ++.... .... .....+|. +.+ .. ..|.|+|+|+++....
T Consensus 191 sk~~i---------~~~~~~-~~~~---------------------~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~~ 239 (362)
T 4gew_A 191 VSKMF---------DVEKHD-VIHF---------------------QNSGMYRTLQILEGSIGGLKVFLLNTHLESTREH 239 (362)
T ss_dssp EETTE---------EEEEEE-EEEC---------------------TTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG
T ss_pred EeccC---------cccccc-ccCC---------------------CCCcccceEEEEEEEECCEEEEEEEecCCccccc
Confidence 99842 221111 1000 01112232 222 22 3699999999986542
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHH--hCCCeEEEecCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCcccccccc
Q 011576 154 DTVRIQFKLQFFHVLQKRWEFLL--CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231 (482)
Q Consensus 154 ~~~r~~~k~~fl~~L~~~i~~l~--~~~~pvII~GDFN~~~~~~D~~~~~~~~~~~~~r~~l~~ll~~~g~~L~Dv~R~~ 231 (482)
. ..|...+..+...+..+. ..+.|+||+||||..+...+.. .. +|.|+|+..
T Consensus 240 ~----~~R~~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~~~~~--------------------~~--gl~Da~~~~ 293 (362)
T 4gew_A 240 R----PQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSRV--------------------PD--GVKDAWEAA 293 (362)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGGCCCC--------------------CT--TCEEHHHHT
T ss_pred h----hHHHHHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcccchh--------------------cc--hHHHHHHHh
Confidence 2 233444444545444432 4578999999999876543211 12 399999998
Q ss_pred CCCCCCccccCCCCCCCccc--CCcceEEEEEEcCCCccccccccccccccceeeeeeeeeccccCCCCCCCCccCCCCc
Q 011576 232 HPERREAYTCWPSNTGAEQF--NYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMST 309 (482)
Q Consensus 232 ~P~~~~~yT~~s~~~~~~~~--n~gsRID~Ilvs~~~l~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~ 309 (482)
++.....||||......... ..+.||||||+++.+ .+.++.+....+... .
T Consensus 294 ~~~~~~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~~l---------------~~~~~~vi~~~ri~~------------~ 346 (362)
T 4gew_A 294 GSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPL---------------DKVKFTLEGRQRIRS------------C 346 (362)
T ss_dssp TCCGGGCCSEETTTCTTSCCSSCCEECCEEEEEESSC---------------CEEEEEEECCSCCTT------------T
T ss_pred CCCCCCCcCcccccCcccccCCCCCcceEEEEEcCCc---------------ceeEEEEEeeeecCC------------C
Confidence 87655569999887654432 345799999999886 455666553221000 0
Q ss_pred CCCCCCCcceEEEEe
Q 011576 310 RLEGSDHAPVYMCLG 324 (482)
Q Consensus 310 ~~~~SDH~PV~~~l~ 324 (482)
...+|||+||+++|.
T Consensus 347 ~~~pSDH~pV~A~FS 361 (362)
T 4gew_A 347 LCFPSDHWAINATFF 361 (362)
T ss_dssp SSCSCSSCEEEEEEE
T ss_pred CCCCCcccCEEEEEc
Confidence 135799999999985
No 13
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.95 E-value=4.4e-27 Score=225.31 Aligned_cols=231 Identities=15% Similarity=0.189 Sum_probs=139.1
Q ss_pred CEEEEeeccCcccc--ccccchHHHHHhhcCCcEEEEecccccccchhhHHHhhcCCcEEEeecccCCCCCCcceEEEEE
Q 011576 1 MKIVTYNVNGLRQR--VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (482)
Q Consensus 1 mrIlTwNVnGl~~~--~~r~~~l~~~L~~~~pDII~LQEtk~~~~~l~~~l~~~~gY~~~~s~~~~~~~g~~g~~GVAIl 78 (482)
|||+||||+|+... ..|...|.++|++++||||||||+... .+. .+....+|..++.. +..+..|++|+
T Consensus 14 l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~--~~~-~l~~~~~~~~~~~~------~~~~~~g~~il 84 (256)
T 4fva_A 14 VSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDR--DLA-PIDKLQSLYKIYYS------NKGCQYYTAIL 84 (256)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECST--TCH-HHHGGGGTEEEEES------STTSSSEEEEE
T ss_pred EEEEEEecCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEecChh--HhH-HHHHhcCCceEeec------CCCCCcceEEE
Confidence 69999999998542 334456999999999999999999632 222 23333444444432 22344699999
Q ss_pred EeccCCCCCcccccceeeeecccccccccCcccccCccccccccccccCCCCC-EEEE--ee--CeEEEEEEEecCCCCC
Q 011576 79 CRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVIT--DH--GHFILFNVYGPRADSE 153 (482)
Q Consensus 79 sR~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eGR-~i~v--~~--~~~~l~nvY~P~~~~~ 153 (482)
++.++ ++.....+ .+. ....++ .+.+ .. ..+.|+|+|+++....
T Consensus 85 ~~~~~---------~~~~~~~~-~~~---------------------~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~ 133 (256)
T 4fva_A 85 VSKMF---------DVEKHDVI-HFQ---------------------NSGMYRTLQILEGSIGGLKVFLLNTHLESTREH 133 (256)
T ss_dssp EETTC---------EEEEEEEE-ECT---------------------TCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG
T ss_pred Eeecc---------cceecccc-cCC---------------------CCcccceeEEEEEEeCCeEEEEEEecCCCCCcc
Confidence 99852 22211111 000 011222 2222 22 4699999999986542
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHH--hCCCeEEEecCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCcccccccc
Q 011576 154 DTVRIQFKLQFFHVLQKRWEFLL--CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 231 (482)
Q Consensus 154 ~~~r~~~k~~fl~~L~~~i~~l~--~~~~pvII~GDFN~~~~~~D~~~~~~~~~~~~~r~~l~~ll~~~g~~L~Dv~R~~ 231 (482)
..++ ...+..+...+..+. ..+.|+||+||||..+...... .. ++.|+|+..
T Consensus 134 ~~~~----~~q~~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~~~~~--------------------~~--~~~d~~~~~ 187 (256)
T 4fva_A 134 RPQR----CAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSRV--------------------PD--GVKDAWEAA 187 (256)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHSTTCEEEEEEECCCCGGGCCCC--------------------CT--TCEEHHHHT
T ss_pred hHHH----HHHHHHHHHHhhhhhhccCCCcEEEeccCCCCcchhhhh--------------------hc--chhhHHHHh
Confidence 2222 223333333333322 4578999999999765432210 12 399999988
Q ss_pred CCCCCCccccCCCCCCCcc--cCCcceEEEEEEcCCCccccccccccccccceeeeeeeeeccccCCCCCCCCccCCCCc
Q 011576 232 HPERREAYTCWPSNTGAEQ--FNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMST 309 (482)
Q Consensus 232 ~P~~~~~yT~~s~~~~~~~--~n~gsRID~Ilvs~~~l~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~ 309 (482)
++.....|||+........ .....||||||+++.+ .+.++++....+-.. .
T Consensus 188 ~~~~~~~~T~~~~~~~~~~~~~~~~~RiD~I~~~~~~---------------~~~~~~~~~~~~~~~------------~ 240 (256)
T 4fva_A 188 GSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPL---------------DKVKFTLEGRQRIRS------------C 240 (256)
T ss_dssp TCCGGGCCSEETTTCCSSCSCCSCEECCEEEEEESSC---------------CEEEEEEECCSCCTT------------T
T ss_pred CCCCCCCcccccccCcccccCCCCCcCeEEEEEcCCc---------------eeeEEEEEeeEecCC------------C
Confidence 8765556999877654332 2345799999999886 556666553311000 0
Q ss_pred CCCCCCCcceEEEEe
Q 011576 310 RLEGSDHAPVYMCLG 324 (482)
Q Consensus 310 ~~~~SDH~PV~~~l~ 324 (482)
...+|||+||+++|.
T Consensus 241 ~~~~SDH~pv~a~Fs 255 (256)
T 4fva_A 241 LCFPSDHWAINATFF 255 (256)
T ss_dssp CSCSCSSCEEEEEEE
T ss_pred CCCcCcccCEEEEEc
Confidence 125799999999985
No 14
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.93 E-value=1.2e-25 Score=217.70 Aligned_cols=240 Identities=20% Similarity=0.197 Sum_probs=140.5
Q ss_pred CEEEEeeccCccccc--cccchHHHHHhhcCCcEEEEeccccccc-----------c----hhhHHHhhc--CCcEEEee
Q 011576 1 MKIVTYNVNGLRQRV--SQFGSLRKLLDSFDADIICFQETKLRRQ-----------E----LKSDLVMAD--GYESFFSC 61 (482)
Q Consensus 1 mrIlTwNVnGl~~~~--~r~~~l~~~L~~~~pDII~LQEtk~~~~-----------~----l~~~l~~~~--gY~~~~s~ 61 (482)
|||+||||+++.... .+...|+++|++++||||||||+..... . +...+.... +|..++..
T Consensus 4 l~v~t~Ni~~~~~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~y~~~~~~ 83 (266)
T 3teb_A 4 MKILTVNVHAWLEENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYTDTDYYLHWSN 83 (266)
T ss_dssp EEEEEEECCTTCSTTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHHHTTTCCSCCEEEEEE
T ss_pred eEEEEEecccccCcchhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHHHHHhCCCCeEEEEec
Confidence 699999998764321 1224588999999999999999964321 0 222222222 37665433
Q ss_pred cccCCCCCCcceEEEEEEeccCCCCCcccccceeeeecccccccccCcccccCccccccccccccCCCCCEEEEee----
Q 011576 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH---- 137 (482)
Q Consensus 62 ~~~~~~g~~g~~GVAIlsR~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eGR~i~v~~---- 137 (482)
... ....+..|+|||+|.+ +.....+. +.. .|.. ...+ ..+++.+.+
T Consensus 84 ~~~--~~~~~~~g~ailsr~~-----------~~~~~~~~-~~~--~~~~------------~~~~-~r~~~~~~~~~~~ 134 (266)
T 3teb_A 84 SHI--GFGKYNEGVAVITRHK-----------IKAEDEFY-CTF--AQSV------------RTIS-ARRIVSITINYEG 134 (266)
T ss_dssp EEE--CSTTEEEEEEEEESSC-----------CSEEEEEE-CSS--CCCT------------TCTT-CCEEEEEEEEETT
T ss_pred ccc--CccccCCeEEEEECce-----------ecCceeEE-eCC--CCCC------------CCcc-cceEEEEEEEeCC
Confidence 211 1123346999999874 21111110 000 0000 0011 123333433
Q ss_pred CeEEEEEEEecCCCCCChhhHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCCCcccccCCCCCCCchHHHHHHHHHH
Q 011576 138 GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML 217 (482)
Q Consensus 138 ~~~~l~nvY~P~~~~~~~~r~~~k~~fl~~L~~~i~~l~~~~~pvII~GDFN~~~~~~D~~~~~~~~~~~~~r~~l~~ll 217 (482)
..+.|+|+|++........| ..+++.|.+.+ ..+.|+||+||||+.+... ...++.++
T Consensus 135 ~~~~v~~~Hl~~~~~~~~~r----~~q~~~l~~~~----~~~~~~il~GDfN~~~~~~--------------~~~~~~l~ 192 (266)
T 3teb_A 135 QDIEFYSCHMNLPNCETEDM----GKNIQTILNRT----QNSNLKILMGDFNTDAIGN--------------VAAYENIL 192 (266)
T ss_dssp EEEEEEEEECCCTTCTTCCH----HHHHHHHHTSS----CSCCEEEEEEECCCCTTTC--------------HHHHHHHH
T ss_pred eEEEEEEecCCCccCChHHH----HHHHHHHHHHH----hcCCcEEEEeECCCCCCCC--------------CcHHHhhc
Confidence 46999999998864322222 34444444433 2378999999999876210 23355554
Q ss_pred HHcCCCccccccccCCCCCCccccCCCCCCCcccCCcceEEEEEEcCCCccccccccccccccceeeeeeeeeccccCCC
Q 011576 218 VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 297 (482)
Q Consensus 218 ~~~g~~L~Dv~R~~~P~~~~~yT~~s~~~~~~~~n~gsRID~Ilvs~~~l~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~ 297 (482)
..+ |.|+|+..++...+ |||....+.......+.||||||+++.+ .+.++.+......
T Consensus 193 -~~~--l~d~~~~~~~~~~~-~t~~~~~~~~~~~~~~~riD~i~~s~~~---------------~~~~~~v~~~~~~--- 250 (266)
T 3teb_A 193 -SQG--LFDTYVMAEKKDDG-ITVDKSIHGWDNDKAKKRLDYIFSNKEL---------------KVKESKVIFNNKN--- 250 (266)
T ss_dssp -TTT--CEEHHHHCSEECCC-CCEECC------CTTEECCEEEEESSCC---------------CEEEEEEESSSSS---
T ss_pred -ccc--ccchHHhhccccCC-ccccCccCCcCcCCcCCeeEEEEeCCCe---------------EEEEEEEEeCCCC---
Confidence 334 99999999987554 8885433322122357899999999876 6788888764211
Q ss_pred CCCCCccCCCCcCCCCCCCcceEEEEec
Q 011576 298 GNAPRWKGGMSTRLEGSDHAPVYMCLGE 325 (482)
Q Consensus 298 ~~~~~w~~~~~~~~~~SDH~PV~~~l~~ 325 (482)
....|||+||+++|.+
T Consensus 251 ------------~~~~SDH~Pv~~~l~l 266 (266)
T 3teb_A 251 ------------KEIVSDHFGIEVKIEF 266 (266)
T ss_dssp ------------SCCCSSSCEEEEEECC
T ss_pred ------------CCCcCCccCEEEEEEC
Confidence 1367999999999863
No 15
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.93 E-value=8.1e-25 Score=211.82 Aligned_cols=240 Identities=18% Similarity=0.138 Sum_probs=146.2
Q ss_pred CEEEEeeccCccccc------cccchHHHHHhhcCCcEEEEecccccccchhhHHHhhcCCcEEEeecccCCCCCCcceE
Q 011576 1 MKIVTYNVNGLRQRV------SQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSG 74 (482)
Q Consensus 1 mrIlTwNVnGl~~~~------~r~~~l~~~L~~~~pDII~LQEtk~~~~~l~~~l~~~~gY~~~~s~~~~~~~g~~g~~G 74 (482)
|||+||||++.+... .|...+.++|+.++||||||||+... .+ ..+....||..+..... .+ .+..|
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~--~~-~~l~~~l~y~~~~~~~~---~~-~~~~g 73 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPN--QV-RDLKAYTTFTCLSAERE---GD-GQGEG 73 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHH--HH-HHHHHHSSSEEEEEESS---SS-SCSCE
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHHHcCCCEEEEeCCCHH--HH-HHHHhcCCCcEEEeccc---CC-CCCce
Confidence 799999999876532 23346999999999999999999742 22 22344459976654331 22 23469
Q ss_pred EEEEEeccCCCCCcccccceeeeecccccccccCcccccCccccccccccccCCCCCEEE-E--ee----CeEEEEEEEe
Q 011576 75 VATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVI-T--DH----GHFILFNVYG 147 (482)
Q Consensus 75 VAIlsR~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eGR~i~-v--~~----~~~~l~nvY~ 147 (482)
+|||+|... .|+.....+ .+.. .|... +.. .-..+.|.+. + .. ..+.|+|+|+
T Consensus 74 ~ail~r~~~--------~~~~~~~~~-~l~~--~~~~~-~~~--------~~~~~~r~~~~~~~~~~~~g~~~~v~~~Hl 133 (257)
T 3l1w_A 74 LAILYNEQK--------VQAIDTGYF-WLSE--TPQQP-SIH--------PEAGCPRIALWGLFKETTQNTPFLVINVHL 133 (257)
T ss_dssp EEEEECTTT--------EEEEEEEEE-ESSS--STTSS-CCC--------TTCSSCCEEEEEEEEETTCSSCEEEEEEEC
T ss_pred EEEEEEcce--------EEEEecCeE-ECcC--CCCcc-ccc--------ccccccceeEEEEEEEcCCCCEEEEEEeCC
Confidence 999999631 133221111 0100 01100 000 0012445433 2 22 3699999999
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCcccc
Q 011576 148 PRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDV 227 (482)
Q Consensus 148 P~~~~~~~~r~~~k~~fl~~L~~~i~~l~~~~~pvII~GDFN~~~~~~D~~~~~~~~~~~~~r~~l~~ll~~~g~~L~Dv 227 (482)
++... ..|..++..|.+.+.+....+ |+||+||||..+.. ..++ ++.. +|.|+
T Consensus 134 ~~~~~------~~r~~q~~~l~~~i~~~~~~~-pvil~GDfN~~~~~----------------~~~~-~l~~---~l~d~ 186 (257)
T 3l1w_A 134 DHISA------HARLAGMTVILEELHDKIAQY-PTLLMGDFNAESGE----------------EVHQ-LVQK---KFQDS 186 (257)
T ss_dssp CSSCH------HHHHHHHHHHHHHTHHHHHHS-CEEEEEECCCCTTS----------------HHHH-HHTT---TCEEG
T ss_pred CCCCH------HHHHHHHHHHHHHHHHHcCCC-CEEEEeeCCCCCCc----------------HHHH-Hhhh---hccch
Confidence 87542 345666777777776323344 99999999986542 1122 2322 39999
Q ss_pred ccccCCCCCCccccCCCCCCCcccCCcceEEEEEEcCCCccccccccccccccceeeeeeeeeccccCCCCCCCCccCCC
Q 011576 228 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGM 307 (482)
Q Consensus 228 ~R~~~P~~~~~yT~~s~~~~~~~~n~gsRID~Ilvs~~~l~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~ 307 (482)
|+..++... .+||...... .+.+.+.||||||+ +.+ .+.++.+......
T Consensus 187 ~~~~~~~~~-~~t~~~~~~~-~~~~~~~riD~i~~-~~~---------------~~~~~~v~~~~~~------------- 235 (257)
T 3l1w_A 187 KNLATHYGP-RGTFQNFTYT-KPWAELEEIDYIYV-KGW---------------QVQQTASLTDSID------------- 235 (257)
T ss_dssp GGTSEEESC-SCCBCTTCTT-CCGGGCBCCEEEEE-ESE---------------EEEEEEECCCCBT-------------
T ss_pred hhhhcccCC-CCcccCCccc-CCCCCCCceeEEEE-CCc---------------EEEEEEEeccCcC-------------
Confidence 998876533 4787654321 23345689999999 654 6788887753110
Q ss_pred CcCCCCCCCcceEEEEecCC
Q 011576 308 STRLEGSDHAPVYMCLGEVP 327 (482)
Q Consensus 308 ~~~~~~SDH~PV~~~l~~~~ 327 (482)
...+|||+||+++|.+..
T Consensus 236 --~~~~SDH~pv~~~l~~~~ 253 (257)
T 3l1w_A 236 --GRFPSDHFPLEAEVAGEN 253 (257)
T ss_dssp --TBCSSSBCCEEEEEEEC-
T ss_pred --CcccCCcceEEEEEEEEe
Confidence 126899999999998753
No 16
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.93 E-value=5.6e-25 Score=207.51 Aligned_cols=237 Identities=15% Similarity=0.166 Sum_probs=137.1
Q ss_pred CEEEEeeccCcccc--ccccchHHHHHhhcCCcEEEEecccccccchhhHHHhhcCCcEEEeecccCCCCCCcceEEEEE
Q 011576 1 MKIVTYNVNGLRQR--VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (482)
Q Consensus 1 mrIlTwNVnGl~~~--~~r~~~l~~~L~~~~pDII~LQEtk~~~~~l~~~l~~~~gY~~~~s~~~~~~~g~~g~~GVAIl 78 (482)
|||+||||+|+... ..|...|+++|++++||||||||+.. ..+ ..+....++..++... ..++.|++++
T Consensus 4 l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~--~~~-~~l~~~~~~~~~~~~~------~~~~~~~~~~ 74 (250)
T 4f1h_A 4 LSIISWNVDGLDTLNLADRARGLCSYLALYTPDVVFLQELIP--AYV-QYLKKRAVSYLFFEGS------DDGYFTGIML 74 (250)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECH--HHH-HHHHHHCTTEEEEESC------SSSSEEEEEE
T ss_pred EEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEeCCH--HHH-HHHHHhccCceeeccc------ccccCceeEE
Confidence 79999999998542 23345699999999999999999963 222 2233444555444432 2334577777
Q ss_pred EeccCCCCCcccccceeeeecccccccccCcccccCccccccccccccCCCCCEEE-Ee----eCeEEEEEEEecCCCCC
Q 011576 79 CRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVI-TD----HGHFILFNVYGPRADSE 153 (482)
Q Consensus 79 sR~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eGR~i~-v~----~~~~~l~nvY~P~~~~~ 153 (482)
.+.+ .|+.....+. . .....++.+. +. ...+.++++|+++....
T Consensus 75 ~~~~---------~~~~~~~~~~-~---------------------~~~~~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~ 123 (250)
T 4f1h_A 75 RKSR---------VKFLESEIIC-F---------------------PTTQMMRNLLIAQVTFSGQKLYLMTSHLESCKNQ 123 (250)
T ss_dssp ETTT---------CEEEEEEEEE-C---------------------TTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG
T ss_pred eecc---------ccceeccccc-c---------------------cCccccceEEEEEEecCCcEEEEecccccccccc
Confidence 6653 2332221110 0 0122333332 22 24689999999876532
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCccccccccCC
Q 011576 154 DTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 233 (482)
Q Consensus 154 ~~~r~~~k~~fl~~L~~~i~~l~~~~~pvII~GDFN~~~~~~D~~~~~~~~~~~~~r~~l~~ll~~~g~~L~Dv~R~~~P 233 (482)
...+..+++.+.+.+++. ..+.|+||+||||+.+...+.... ...++.|+|+.+++
T Consensus 124 ----~~~r~~q~~~~~~~l~~~-~~~~pvIl~GDfN~~~~~~~~~~~-------------------~~~~~~~~~~~~~~ 179 (250)
T 4f1h_A 124 ----SQERTKQLRVVLQKIKEA-PEDAIVIFAGDTNLRDAEVANVGG-------------------LPAGVCDVWEQLGK 179 (250)
T ss_dssp ----HHHHHHHHHHHHHHHHHS-CTTEEEEEEEECCCCHHHHHTTTS-------------------SCTTEEEHHHHTTC
T ss_pred ----HHHHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCcchhhhhh-------------------ccccchHHHHHhcC
Confidence 233445566666666542 356799999999976543222110 11237888888887
Q ss_pred CCCCccccCCCCCC--CcccCCcceEEEEEEcCCCccccccccccccccceeeeeeeeeccccCCCCCCCCccCCCCcCC
Q 011576 234 ERREAYTCWPSNTG--AEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRL 311 (482)
Q Consensus 234 ~~~~~yT~~s~~~~--~~~~n~gsRID~Ilvs~~~l~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~ 311 (482)
.....++|+..... ......+.||||||+++..... ...+....+....+ .+ ...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~----------~~~~~~~~~~~~~~--~~-----------~~~ 236 (250)
T 4f1h_A 180 QEHCRYTWDTKANSNKTVPYVSRCRFDRIFLRSAKTAP----------PVTPDHMALIGMEK--LD-----------CGR 236 (250)
T ss_dssp CGGGCCSEETTTCCSSCCSSCCEECCEEEEEECCTTSC----------CCEEEEEEEECCSC--CT-----------TSS
T ss_pred CccCCcccccccCCCCCcCCCCCccEEEEEEeCccccc----------ceeeeEEEEecccc--cC-----------CCC
Confidence 65555666554332 2223457899999999875321 01233333332211 00 113
Q ss_pred CCCCCcceEEEEe
Q 011576 312 EGSDHAPVYMCLG 324 (482)
Q Consensus 312 ~~SDH~PV~~~l~ 324 (482)
.+|||+||+++|+
T Consensus 237 ~~SDH~pv~a~f~ 249 (250)
T 4f1h_A 237 YTSDHWGIYCTFN 249 (250)
T ss_dssp CSCSBCEEEEEEE
T ss_pred CCCcccCEEEEEe
Confidence 5799999999996
No 17
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.93 E-value=5e-25 Score=210.65 Aligned_cols=235 Identities=15% Similarity=0.120 Sum_probs=133.4
Q ss_pred CEEEEeeccCcccc--ccccchHHHHHhhcCCcEEEEecccccccchhhHHHhhcCCcEEEeecccCCCCCCcceEEEEE
Q 011576 1 MKIVTYNVNGLRQR--VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (482)
Q Consensus 1 mrIlTwNVnGl~~~--~~r~~~l~~~L~~~~pDII~LQEtk~~~~~l~~~l~~~~gY~~~~s~~~~~~~g~~g~~GVAIl 78 (482)
|||+||||+|+... ..|...|+++|++++||||||||+.. ..+. .+... .+.+++... +..++ |.+++
T Consensus 10 l~v~swNi~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~--~~~~-~l~~~-~~~~~~~~~-----~~~~~-~~~~l 79 (256)
T 4gz1_A 10 ISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIP--PYCA-YLKKR-AASYTIITG-----NEEGY-FTAIL 79 (256)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECH--HHHH-HHHHH-CTTEEEEES-----CSSSS-EEEEE
T ss_pred EEEEEEEcCCCcCcCHHHHHHHHHHHHHHcCCCEEEEEcCCH--HHHH-HHHhh-ccccceeec-----cccCC-ceEEE
Confidence 69999999998642 23445699999999999999999853 2222 22222 333333222 23344 55566
Q ss_pred EeccCCCCCcccccceeee-ecccccccccCcccccCccccccccccccCCCCCE-EEEe--e--CeEEEEEEEecCCCC
Q 011576 79 CRVKSPFSSTEVALPVAAE-EGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRC-VITD--H--GHFILFNVYGPRADS 152 (482)
Q Consensus 79 sR~~~~f~~~~~~~pi~v~-~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eGR~-i~v~--~--~~~~l~nvY~P~~~~ 152 (482)
++.. ++... ...... .....++. +.+. . ..+.|+|+|+++...
T Consensus 80 ~~~~----------~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~ 128 (256)
T 4gz1_A 80 LKKG----------RVKFKSQEIIPF---------------------PNTKMMRNLLCVNVSLGGNEFCLMTSHLESTRE 128 (256)
T ss_dssp EETT----------TEEEEEEEEEEC---------------------TTCSSCCEEEEEEEEETTEEEEEEECBCCCSGG
T ss_pred EEec----------cccceecccccC---------------------CcccccceEEEEEEEeCCEEEEEEeeccccccc
Confidence 6552 22111 111000 01112222 2222 2 469999999987653
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCccccccccC
Q 011576 153 EDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 232 (482)
Q Consensus 153 ~~~~r~~~k~~fl~~L~~~i~~l~~~~~pvII~GDFN~~~~~~D~~~~~~~~~~~~~r~~l~~ll~~~g~~L~Dv~R~~~ 232 (482)
. ...+.+++..+.+.+++. ..+.|+||+||||+.+...+. .. + ...++.|+|+..+
T Consensus 129 ~----~~~~~~q~~~~~~~l~~~-~~~~pvIl~GDfN~~~~~~~~----------------~~-~--~~~~~~~~~~~~~ 184 (256)
T 4gz1_A 129 H----SAERIRQLKTVLGKMQEA-PDSTTVIFAGDTNLRDQEVIK----------------CG-G--LPDNVFDAWEFLG 184 (256)
T ss_dssp G----HHHHHHHHHHHHHHHHHS-CTTSEEEEEEECCCCHHHHHH----------------HT-C--SCTTEEEHHHHTT
T ss_pred c----hhhhhHHHHHHhhhhhhc-cCcceEEEeCccCCCcchhhh----------------hh-h--ccchhhhHHHHhc
Confidence 2 223344555555555442 457899999999976432211 00 1 1124888898887
Q ss_pred CCCCCccccCCCCCC--CcccCCcceEEEEEEcCCCccccccccccccccceeeeeeeeeccccCCCCCCCCccCCCCcC
Q 011576 233 PERREAYTCWPSNTG--AEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTR 310 (482)
Q Consensus 233 P~~~~~yT~~s~~~~--~~~~n~gsRID~Ilvs~~~l~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~ 310 (482)
+.....|||+..... ..+.+.+.||||||+++.... + .+..+++....+- ...
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~----~--------~~~~~~~~~~~~~-------------~~~ 239 (256)
T 4gz1_A 185 KPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGH----L--------IPQSLDLVGLEKL-------------DCG 239 (256)
T ss_dssp CCGGGSCSEETTTCCTTCCSSCCEECCEEEEEECC-CS----E--------EEEEEEEECCSCC-------------TTS
T ss_pred CCCCCCcccccCCCCccccCCCCCccEEEEEEECCccc----e--------eeeEEEEEecccc-------------CCC
Confidence 665545776654432 223456789999999976422 0 3444454432110 011
Q ss_pred CCCCCCcceEEEEec
Q 011576 311 LEGSDHAPVYMCLGE 325 (482)
Q Consensus 311 ~~~SDH~PV~~~l~~ 325 (482)
..+|||+||+++|++
T Consensus 240 ~~~SDH~pv~a~~~i 254 (256)
T 4gz1_A 240 RFPSDHWGLLCTLNV 254 (256)
T ss_dssp SCSCSBCEEEEEEEE
T ss_pred CCCCccccEEEEEEE
Confidence 367999999999986
No 18
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.92 E-value=5e-24 Score=207.61 Aligned_cols=244 Identities=18% Similarity=0.197 Sum_probs=147.3
Q ss_pred CEEEEeeccCcccc------ccccchHHHHHhhcCCcEEEEecccccccchhhHHHhh-cCCcEEEeecccCCCCCCcce
Q 011576 1 MKIVTYNVNGLRQR------VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMA-DGYESFFSCTRTSDKGRTGYS 73 (482)
Q Consensus 1 mrIlTwNVnGl~~~------~~r~~~l~~~L~~~~pDII~LQEtk~~~~~l~~~l~~~-~gY~~~~s~~~~~~~g~~g~~ 73 (482)
|||+||||++.+.. ..|...+.++|+..+||||||||+... .+. .+... .+|..+..... .+..+..
T Consensus 4 l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~--~~~-~l~~~l~~y~~~~~~~~---~~~~~g~ 77 (267)
T 3g6s_A 4 VRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHN--QFQ-DLRAGLPEYDGIGVGRD---DGKTAGE 77 (267)
T ss_dssp EEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHH--HHH-HHHHHCTTEEEECCCTT---TSSSSSC
T ss_pred EEEEEEEeccCCCCccccCHHHHHHHHHHHHHHcCCCEEEEecCCHH--HHH-HHHHhccCCcEEEecCC---CCCcCCc
Confidence 69999999987531 233356999999999999999999843 221 23333 67876553221 2322334
Q ss_pred EEEEEEeccCCCCCcccccceeeeecccccccccCcccccCccccccccccccC-CCCCEE-EEee------CeEEEEEE
Q 011576 74 GVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKID-SEGRCV-ITDH------GHFILFNV 145 (482)
Q Consensus 74 GVAIlsR~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D-~eGR~i-~v~~------~~~~l~nv 145 (482)
|+|||+|.. + .|+.....+ .+.. .|... +. ..++ ...|.+ .+.+ ..+.|+|+
T Consensus 78 ~~ail~~~s-~-------~~~~~~~~~-~l~~--~~~~~-~~--------~~~~~~~~R~~~~~~~~~~~~~~~~~v~~~ 137 (267)
T 3g6s_A 78 YAPLFYRKD-K-------YEVLDSNTF-WLAE--NPDSV-GM--------MGWDAVCVRIATWAKFKDKATGKIFMAVNT 137 (267)
T ss_dssp BCCEEEETT-T-------EEEEEEEEE-ESSS--CTTST-TC--------CCTTCSSCCEEEEEEEEETTTCCEEEEEEE
T ss_pred eeEEEEEcc-c-------eEEEecccE-ecCC--CCCcc-cc--------ccccccCcceEEEEEEEEcCCCCEEEEEEe
Confidence 699998752 1 233222211 0100 01100 00 0011 234532 2222 36999999
Q ss_pred EecCCCCCChhhHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCCcc
Q 011576 146 YGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFF 225 (482)
Q Consensus 146 Y~P~~~~~~~~r~~~k~~fl~~L~~~i~~l~~~~~pvII~GDFN~~~~~~D~~~~~~~~~~~~~r~~l~~ll~~~g~~L~ 225 (482)
|++.... ..|.++++.|.+.+.++. .+.|+||+||||+.+.. ..++.+. ..+.+|.
T Consensus 138 Hl~~~~~------~~R~~q~~~l~~~l~~~~-~~~pvIl~GDfN~~~~~----------------~~~~~l~-~~~~~l~ 193 (267)
T 3g6s_A 138 HFDHVGE------EARRQSALLIIRKIKEIV-GERPAVVTGDFNVTDAS----------------DAYETIT-TNEFVMK 193 (267)
T ss_dssp ECCSSCH------HHHHHHHHHHHHHHHHHT-TTSCEEEEEECSSCTTS----------------HHHHHHH-SSSSCCE
T ss_pred CCCCCCH------HHHHHHHHHHHHHHHHhc-CCCCEEEEeECCCCCCC----------------HHHHHhh-cCCcchh
Confidence 9987542 345566677777777653 47899999999986542 1133332 2211399
Q ss_pred ccccccCCCCCCccccCCCCCCCcccCCcceEEEEEEcCCCccccccccccccccceeeeeeeeeccccCCCCCCCCccC
Q 011576 226 DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKG 305 (482)
Q Consensus 226 Dv~R~~~P~~~~~yT~~s~~~~~~~~n~gsRID~Ilvs~~~l~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~ 305 (482)
|+|+..++.....+||....... .+.+.||||||+++.+ .+.++.+.....
T Consensus 194 d~~~~~~~~~~~~~T~~~~~~~~--~~~~~riD~I~~s~~~---------------~~~~~~v~~~~~------------ 244 (267)
T 3g6s_A 194 DAYKTAARVTGVDYTFHDFARIP--AEDCEKIDFIFVTPQV---------------LVKSCEIPAEVP------------ 244 (267)
T ss_dssp EHHHHCSEEEECSCSBCTTTTSC--GGGCCCCEEEEECTTS---------------EEEEEEECCCCS------------
T ss_pred hhHhhhccccCCCCCEeCCCCCC--CCCCCcEeEEEeCCCc---------------eEEEEEEecCCC------------
Confidence 99998764322248887764321 2356899999999886 788888876410
Q ss_pred CCCcCCCCCCCcceEEEEecCC
Q 011576 306 GMSTRLEGSDHAPVYMCLGEVP 327 (482)
Q Consensus 306 ~~~~~~~~SDH~PV~~~l~~~~ 327 (482)
.. ..|||+||.+++...+
T Consensus 245 ---~~-~~SDH~PV~a~~~~~~ 262 (267)
T 3g6s_A 245 ---EA-LLSDHNPQLADLELEH 262 (267)
T ss_dssp ---SS-CCCSBCCEEEEEEEC-
T ss_pred ---CC-CCCCcccEEEEEEecc
Confidence 01 4799999999998754
No 19
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.90 E-value=6.1e-23 Score=203.17 Aligned_cols=213 Identities=14% Similarity=0.109 Sum_probs=118.1
Q ss_pred CEEEEeeccCcccc-------ccccchHHHHHhhcCCcEEEEeccccccc--chhhHHHhhcCCcEEEee-ccc--C---
Q 011576 1 MKIVTYNVNGLRQR-------VSQFGSLRKLLDSFDADIICFQETKLRRQ--ELKSDLVMADGYESFFSC-TRT--S--- 65 (482)
Q Consensus 1 mrIlTwNVnGl~~~-------~~r~~~l~~~L~~~~pDII~LQEtk~~~~--~l~~~l~~~~gY~~~~s~-~~~--~--- 65 (482)
|||+||||++++.. ..|...+...+...+||||||||+..... .+...+ ..+|...+.. ... .
T Consensus 11 lrv~t~Ni~~~~~~~~~~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l--~~~~~~~~~~~~~~~~~~~~ 88 (301)
T 1zwx_A 11 FKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNL--REMYPHQTPVIGRSKHGWDK 88 (301)
T ss_dssp CEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHT--TTTCCEECCCTTSCSTTCSE
T ss_pred eEEEEEECccCCccccCCCCHHHHHHHHHHhhccCCCCEEEEeccccHHHHHHHHHHH--hhcCCccccccCCccccccc
Confidence 79999999987421 12223455567789999999999975321 121111 2233221110 000 0
Q ss_pred -----CCCCCcceEEEEEEeccCCCCCcccccceeeeecccccccccCcccccCccccccccccccCCCCC-EEEEee--
Q 011576 66 -----DKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVITDH-- 137 (482)
Q Consensus 66 -----~~g~~g~~GVAIlsR~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eGR-~i~v~~-- 137 (482)
.....+..|||||+|.+ +.....+. +... .+.+ ..+.| ++.+.+
T Consensus 89 ~~g~~~~~~~~~~G~ailSr~p-----------i~~~~~~~-~~~~------~~~~----------~~~~r~~~~~~~~~ 140 (301)
T 1zwx_A 89 TEGNYSNFALEDGGVAVVSQWP-----------IVEKSQHI-FQRG------GGAD----------RLSNKGFAYVKIMK 140 (301)
T ss_dssp EEC-----CCBCCCCEEEESSC-----------EEEEEEEE-CSCC------CGGG----------GGBCCEEEEEEEEE
T ss_pred cccccccccccCCCEEEEecCC-----------cccceEEE-ecCC------CCcc----------cccCCCeEEEEEEE
Confidence 00112446999999973 32221110 0000 0000 01223 333433
Q ss_pred --CeEEEEEEEecCCCCCC--hhhHHHHHHHHHHHHHHHHHH-HhCCCeEEEecCCCCCCCcccccCCCCCCCchHHHHH
Q 011576 138 --GHFILFNVYGPRADSED--TVRIQFKLQFFHVLQKRWEFL-LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIW 212 (482)
Q Consensus 138 --~~~~l~nvY~P~~~~~~--~~r~~~k~~fl~~L~~~i~~l-~~~~~pvII~GDFN~~~~~~D~~~~~~~~~~~~~r~~ 212 (482)
..+.|+|+|+++..... ......|..+++.|.+++++. ...+.|+|||||||..+.. ..
T Consensus 141 ~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~----------------~~ 204 (301)
T 1zwx_A 141 NGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGT----------------DE 204 (301)
T ss_dssp TTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTS----------------HH
T ss_pred CCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCc----------------HH
Confidence 36999999998864321 124456777888888888765 2346899999999987653 12
Q ss_pred HHHHHHHcCCCcc--ccccccCCCCCCccccCCCCC----CCcccCCcceEEEEEEcCCCc
Q 011576 213 FRSMLVESGGSFF--DVFRSKHPERREAYTCWPSNT----GAEQFNYGTRIDHILCAGPCL 267 (482)
Q Consensus 213 l~~ll~~~g~~L~--Dv~R~~~P~~~~~yT~~s~~~----~~~~~n~gsRID~Ilvs~~~l 267 (482)
++.++...+ +. |+|+- . .+||..... .+++...+.||||||+++...
T Consensus 205 ~~~l~~~~~--~~~~d~~~g-----~-~~T~~~~~n~~~~~t~~~~~~~rID~I~~~~~~~ 257 (301)
T 1zwx_A 205 YHDMLKLLN--VSSPANFNG-----Q-MATWDPTTNSMLKESYPKAAPEYLDYIFVENGHA 257 (301)
T ss_dssp HHHHHHHHT--BCCCTTCCT-----T-SCSBCTTTCHHHHHHCTTSCCBCCEEEEEBTTSC
T ss_pred HHHHHHHcC--CCCCccccC-----C-CceECCccCccccccCCCCCcceEeEEEEeCCCC
Confidence 455554444 55 88861 1 377743211 012223578999999998753
No 20
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=7.7e-22 Score=196.23 Aligned_cols=257 Identities=19% Similarity=0.213 Sum_probs=142.5
Q ss_pred CEEEEeeccCcccc--------ccccchHHHHHhhcCCcEEEEecccccccchhhHHHh-hcCCcEEEeecccCCCCCCc
Q 011576 1 MKIVTYNVNGLRQR--------VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVM-ADGYESFFSCTRTSDKGRTG 71 (482)
Q Consensus 1 mrIlTwNVnGl~~~--------~~r~~~l~~~L~~~~pDII~LQEtk~~~~~l~~~l~~-~~gY~~~~s~~~~~~~g~~g 71 (482)
|||+||||+..+.. ..|...|+++|+..+||||||||+... .+. .+.. ..+|..+.... . .|...
T Consensus 7 lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~--~~~-~l~~~l~~y~~~~~~~-~--~g~~~ 80 (298)
T 3mpr_A 7 LTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLH--QLK-DMKEALPGYDYIGVGR-D--DGKDK 80 (298)
T ss_dssp EEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHH--HHH-HHHHHSTTEEEECCCT-T--TSSSS
T ss_pred EEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHH--HHH-HHHHhCCCCcEEEEec-C--CCCCC
Confidence 69999999765431 233346999999999999999999732 222 2222 34666543322 1 12222
Q ss_pred ceEEEEEEeccCCCCCcccccceeeeecccccccccCcccccCccccccccccccC-CCCCEE-EEee------CeEEEE
Q 011576 72 YSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKID-SEGRCV-ITDH------GHFILF 143 (482)
Q Consensus 72 ~~GVAIlsR~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D-~eGR~i-~v~~------~~~~l~ 143 (482)
..|+|||+|.. + .|+.....+ .+.. .|... +. .++ ...|.+ .+.+ ..+.|+
T Consensus 81 g~~~aily~~s-r-------~~i~~~~~~-~l~~--~p~~~-~~---------~~~~~~~R~~~~~~~~~~~~g~~~~v~ 139 (298)
T 3mpr_A 81 GEHSAIFYRTD-K-------FDIVEKGDF-WLSE--TPDVP-SK---------GWDAVLPRICSWGHFKCKDTGFEFLFF 139 (298)
T ss_dssp SCBCCEEEETT-T-------EEEEEEEEE-ESSS--STTSS-CC---------CTTCSSCCEEEEEEEEETTTCCEEEEE
T ss_pred CceeEEEEecC-c-------eEEEeccEE-EccC--CCCcc-Cc---------ccccccCceeEEEEEEEcCCCCEEEEE
Confidence 23599997653 1 243322211 1100 01000 00 011 234432 2222 369999
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHHHHHHHHHh-CCCeEEEecCCCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCC
Q 011576 144 NVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC-QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG 222 (482)
Q Consensus 144 nvY~P~~~~~~~~r~~~k~~fl~~L~~~i~~l~~-~~~pvII~GDFN~~~~~~D~~~~~~~~~~~~~r~~l~~ll~~~g~ 222 (482)
|+|+++.+ ...|.+.++.|.+.+.++.. .+.|+|||||||..+.. ..++.+.. . +
T Consensus 140 ~~Hl~~~~------~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~----------------~~~~~l~~-~-g 195 (298)
T 3mpr_A 140 NLHMDHIG------KKARVESAFLVQEKMKELGRGKNLPAILTGDFNVDQTH----------------QSYDAFVS-K-G 195 (298)
T ss_dssp EEECCSSC------HHHHHHHHHHHHHHHHHTTTTSCCCEEEEEECSSCTTS----------------HHHHHHHT-T-S
T ss_pred EecCCCCC------HHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----------------HHHHHHhc-C-C
Confidence 99998644 23456667777777766432 57899999999986542 12444432 2 2
Q ss_pred CccccccccCCCCCCccccCCCCCCCcccCCcceEEEEEEcCCCccccccccccccccceeeeeeeeecccc-CCCC---
Q 011576 223 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR-WKPG--- 298 (482)
Q Consensus 223 ~L~Dv~R~~~P~~~~~yT~~s~~~~~~~~n~gsRID~Ilvs~~~l~~~~~l~~~~~~~~~V~~~~I~~~~~~-~~~~--- 298 (482)
+|.|+|+...+.....+||...... ...+.||||||+++.+ .|.++.++..... ..+.
T Consensus 196 ~l~D~~~~~~~~~~~~~T~~~~~~~---~~~~~rID~Il~s~~~---------------~v~~~~v~~~~~~~~~~~~~~ 257 (298)
T 3mpr_A 196 VLCDSYEKCDYRYALNGTFNNFDPN---SFTESRIDHIFVSPSF---------------HVKRYGVLTDTYRSVRENSKK 257 (298)
T ss_dssp SSEEHHHHCSEEECSSCSBCTTCTT---CCCSCCCEEEEECTTS---------------EEEEEEECCCCEEEECC----
T ss_pred cchhhHhhhcccCCCCCCccCCCCC---CCCCceEEEEEeCCCe---------------eEEEEEEecCccccCCCcccc
Confidence 4999998776432223777654321 1247899999999886 6777777643110 0000
Q ss_pred ----CC-CCccCCCCcCCCCCCCcceEEEEecC
Q 011576 299 ----NA-PRWKGGMSTRLEGSDHAPVYMCLGEV 326 (482)
Q Consensus 299 ----~~-~~w~~~~~~~~~~SDH~PV~~~l~~~ 326 (482)
+. ..+..........|||+||+++|...
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~SDH~PV~v~~~~~ 290 (298)
T 3mpr_A 258 EDVRDCPEEITIKAYEARTPSDHFPVKVELVFD 290 (298)
T ss_dssp ------------CCEEEECSSSBCCEEEEEEEC
T ss_pred cCcccchhhhccChhhcccCCCCCcEEEEEecc
Confidence 00 00000000112579999999999864
No 21
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.87 E-value=2.1e-21 Score=192.40 Aligned_cols=216 Identities=15% Similarity=0.108 Sum_probs=117.1
Q ss_pred CEEEEeeccCcccc-------ccccchHHHHHhhcCCcEEEEeccccccc--chhhHHHhhcCCcE--------------
Q 011576 1 MKIVTYNVNGLRQR-------VSQFGSLRKLLDSFDADIICFQETKLRRQ--ELKSDLVMADGYES-------------- 57 (482)
Q Consensus 1 mrIlTwNVnGl~~~-------~~r~~~l~~~L~~~~pDII~LQEtk~~~~--~l~~~l~~~~gY~~-------------- 57 (482)
|||+||||++++.. ..|...+...+...+||||||||+..... .+...+ ..+|..
T Consensus 10 lrv~t~Ni~~~~~~~~~~~~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l--~~~~~~~~~~~~~~~~~~~~ 87 (306)
T 2ddr_A 10 LKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNL--KKEYPNQTAVLGRSSGSEWD 87 (306)
T ss_dssp EEEEEEEEEECCTTTCTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHH--TTTCCEECCCTTSCCSTTSS
T ss_pred EEEEEEECccCcccccCCCCHHHHHHHHHHHhhccCCCEEEEEeecCHHHHHHHHHHH--hhhCCceeeccCcccccccc
Confidence 69999999987521 12333355567788999999999975431 121111 223322
Q ss_pred -EEeecccCCCCCCcceEEEEEEeccCCCCCcccccceeeeecccccccccCcccccCccccccccccccC-CCCCE-EE
Q 011576 58 -FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKID-SEGRC-VI 134 (482)
Q Consensus 58 -~~s~~~~~~~g~~g~~GVAIlsR~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D-~eGR~-i~ 134 (482)
.+.... ....+..|+|||+|. |+.....+. +.. +. ..| .++|. +.
T Consensus 88 ~~~~~~~---~~~~~~~G~ailSr~-----------pi~~~~~~~-~~~--------~~---------~~~~~~~r~~~~ 135 (306)
T 2ddr_A 88 KTLGNYS---SSTPEDGGVAIVSKW-----------PIAEKIQYV-FAK--------GC---------GPDNLSNKGFVY 135 (306)
T ss_dssp EEEESCC---TTCSSCCCCEEEESS-----------CEEEEEEEE-CSC--------CC-------------CCCCEEEE
T ss_pred ccccccc---ccCccCCeEEEEECC-----------CcccccEEE-cCC--------CC---------CcchhcCCCeEE
Confidence 221110 112334699999997 333221110 000 00 011 23443 33
Q ss_pred Eee----CeEEEEEEEecCCCCCC--hhhHHHHHHHHHHHHHHHHHH-HhCCCeEEEecCCCCCCCcccccCCCCCCCch
Q 011576 135 TDH----GHFILFNVYGPRADSED--TVRIQFKLQFFHVLQKRWEFL-LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKN 207 (482)
Q Consensus 135 v~~----~~~~l~nvY~P~~~~~~--~~r~~~k~~fl~~L~~~i~~l-~~~~~pvII~GDFN~~~~~~D~~~~~~~~~~~ 207 (482)
+.+ ..+.|+|+|+++..... ......|..+++.|.+++... ...+.|+|||||||..+...|... .
T Consensus 136 ~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN~~~~~~d~~~------s- 208 (306)
T 2ddr_A 136 TKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNN------D- 208 (306)
T ss_dssp EEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCT------T-
T ss_pred EEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCcccccccC------C-
Confidence 333 36999999998764210 123455677788888887764 234679999999999875544211 1
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCCCCCccccCCCCCC----CcccCCcceEEEEEEcCCCc
Q 011576 208 EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG----AEQFNYGTRIDHILCAGPCL 267 (482)
Q Consensus 208 ~~r~~l~~ll~~~g~~L~Dv~R~~~P~~~~~yT~~s~~~~----~~~~n~gsRID~Ilvs~~~l 267 (482)
..++.++...+ +.|. .. ... .|||...... +++...+.||||||+++.+.
T Consensus 209 ---~~~~~l~~~~~--~~~~--~~--~g~-~~T~~~~~n~~~~~t~~~~~~~rID~I~~s~~~~ 262 (306)
T 2ddr_A 209 ---SEYASMFKTLN--ASVP--SY--TGH-TATWDATTNSIAKYNFPDSPAEYLDYIIASKDHA 262 (306)
T ss_dssp ---SHHHHHHHHHT--BCCC--EE--EEC-SCSBCTTTCHHHHHHCTTSCCBCCEEEEEBTTSC
T ss_pred ---HHHHHHHHhcC--CCCc--cc--CCC-CcccCCCCCccccccCCCCCcceeeEEEEeCCCC
Confidence 12445554444 5542 11 112 4888432211 12223478999999998763
No 22
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.85 E-value=8.7e-21 Score=190.84 Aligned_cols=211 Identities=17% Similarity=0.191 Sum_probs=119.9
Q ss_pred CEEEEeeccCccc-------cccccchHHHHHhhcCCcEEEEecccccc--cchhhHHHhhcCCcEEEeecccCCCCCCc
Q 011576 1 MKIVTYNVNGLRQ-------RVSQFGSLRKLLDSFDADIICFQETKLRR--QELKSDLVMADGYESFFSCTRTSDKGRTG 71 (482)
Q Consensus 1 mrIlTwNVnGl~~-------~~~r~~~l~~~L~~~~pDII~LQEtk~~~--~~l~~~l~~~~gY~~~~s~~~~~~~g~~g 71 (482)
|||+||||+++.. +..|...+..++...+||||||||+.... ..+...+ ...|.+.+.... .++.+
T Consensus 30 lrV~T~Ni~~~~~~~~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L--~~~~py~~~~~g---~~~~~ 104 (317)
T 3i41_A 30 LKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNV--KKEYPYQTPVLG---RSQSG 104 (317)
T ss_dssp CCEEEEEEEECCTTTSTTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHT--TTTCCEECCCTT---SCSTT
T ss_pred eEEEEEecccCccccCCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHH--HHhCCcccccCC---ccccC
Confidence 7999999998742 23343446667778999999999997532 1221111 223432221110 01111
Q ss_pred -------c-------eEEEEEEeccCCCCCcccccceeeeecccccccccCcccccCccccccccccccC-CCCCE-EEE
Q 011576 72 -------Y-------SGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKID-SEGRC-VIT 135 (482)
Q Consensus 72 -------~-------~GVAIlsR~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D-~eGR~-i~v 135 (482)
| .|++||+|.+ +....... +.. +. ..| .+.|. +.+
T Consensus 105 ~~~~~~~y~~~~~~~~G~~ilSr~P-----------i~~~~~~~-~~~--------~~---------~~d~~~~r~~~~~ 155 (317)
T 3i41_A 105 WDKTEGSYSSTVAEDGGVAIVSKYP-----------IKEKIQHV-FKS--------GC---------GFDNDSNKGFVYT 155 (317)
T ss_dssp CSEEEESCCSSCSBCCCCEEEESSC-----------EEEEEEEE-CSC--------CC---------SSGGGBCCEEEEE
T ss_pred ccCcccccccccccCCccEEEeCCC-----------CccceeEE-CCC--------CC---------CcccccCcceEEE
Confidence 1 4999999984 32221110 000 00 011 12333 222
Q ss_pred e--e--CeEEEEEEEecCCCCCC--hhhHHHHHHHHHHHHHHHHHH-HhCCCeEEEecCCCCCCCcccccCCCCCCCchH
Q 011576 136 D--H--GHFILFNVYGPRADSED--TVRIQFKLQFFHVLQKRWEFL-LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNE 208 (482)
Q Consensus 136 ~--~--~~~~l~nvY~P~~~~~~--~~r~~~k~~fl~~L~~~i~~l-~~~~~pvII~GDFN~~~~~~D~~~~~~~~~~~~ 208 (482)
. . ..+.|+|+|+++..... ......|..+++.|.++++.. ...+.|+||+||||..+..
T Consensus 156 ~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~s-------------- 221 (317)
T 3i41_A 156 KIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGT-------------- 221 (317)
T ss_dssp EEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTS--------------
T ss_pred EEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhccCCCCeEEEEeECCCCCCC--------------
Confidence 2 2 36999999998754210 133456778888888888775 2357899999999987642
Q ss_pred HHHHHHHHHHHcCCCccccccccCCCCCCccccCCCCCC----CcccCCcceEEEEEEcCCCcc
Q 011576 209 FRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG----AEQFNYGTRIDHILCAGPCLH 268 (482)
Q Consensus 209 ~r~~l~~ll~~~g~~L~Dv~R~~~P~~~~~yT~~s~~~~----~~~~n~gsRID~Ilvs~~~l~ 268 (482)
..++.++...+ +.|.-. ..+ .|||...... .++.+...||||||+++..+.
T Consensus 222 --~~~~~l~~~l~--l~~~~~-~g~----~~t~d~~~n~~~~~~~p~~~~~rLDyIlvs~~~~~ 276 (317)
T 3i41_A 222 --PEFKDMLKNLN--VNDVLY-AGH----NSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQ 276 (317)
T ss_dssp --HHHHHHHHHHT--BCCCEE-EEC----SCSBCTTTCHHHHHHCTTCCCBCCEEEEEBTTSCC
T ss_pred --HHHHHHHHhcC--CCCccc-CCC----CcccCCCCCccccccCCCCCCcceEEEEEeCCcCC
Confidence 12445554444 666522 111 3787765431 233445679999999998743
No 23
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.77 E-value=6.2e-18 Score=175.20 Aligned_cols=178 Identities=20% Similarity=0.250 Sum_probs=96.6
Q ss_pred CEEEEeeccCcc---------------ccccccchHHHHHhhcCCcEEEEecccccc-cchhhHHHhhcCCcEEEeec-c
Q 011576 1 MKIVTYNVNGLR---------------QRVSQFGSLRKLLDSFDADIICFQETKLRR-QELKSDLVMADGYESFFSCT-R 63 (482)
Q Consensus 1 mrIlTwNVnGl~---------------~~~~r~~~l~~~L~~~~pDII~LQEtk~~~-~~l~~~l~~~~gY~~~~s~~-~ 63 (482)
+||+||||..-. .+..|+..|.++|...+||||||||+.... .+.....+...||..++... +
T Consensus 32 ~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~pDIi~lQEv~~~q~~~~l~~~L~~~gY~~v~~~k~r 111 (398)
T 3ngq_A 32 FTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPKSR 111 (398)
T ss_dssp EEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEESCT
T ss_pred EEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCCCEEEEecccHHHHHHHHHHHHHhCCceEEEecCCC
Confidence 589999997421 122344569999999999999999997532 12112334567998877642 1
Q ss_pred cCC---CCCCcceEEEEEEeccCCCCCcccccceeeeecccccccccCccc-ccCccccccccccccCCCCCEEEEee--
Q 011576 64 TSD---KGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI-MEGLEDFSKDELLKIDSEGRCVITDH-- 137 (482)
Q Consensus 64 ~~~---~g~~g~~GVAIlsR~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~-~~gl~~~~~~~~~~~D~eGR~i~v~~-- 137 (482)
... .+++++.|||||+|.. .|++. ..+..++... |.. ..+.+... .+....|.-|-++.+++
T Consensus 112 ~~~~~~~~~~~~eG~AIfyr~~-~f~ll--------~~~~i~ls~~--~~~~s~~~~~~~-~Ri~t~~nval~~~L~~~~ 179 (398)
T 3ngq_A 112 AKIMSEQERKHVDGCAIFFKTE-KFTLV--------QKHTVEFNQV--AMANSDGSEAML-NRVMTKDNIGVAVVLEVHK 179 (398)
T ss_dssp TSCCCHHHHHTCEEEEEEEETT-TEEEE--------EEEEEEHHHH--HHHTCTTCHHHH-HTTTTCCCEEEEEEEEECG
T ss_pred ccccccccccCcceeEEEEECC-cceEE--------eeeEEecCCC--cccccccchhhh-cceeeccceeEEEEEEEcc
Confidence 000 0123457999999984 33221 1111111100 000 00000000 00011122222222332
Q ss_pred ---------------CeEEEEEEEecCCCCCChhhHHHHHHHHHHHHHHHHHHHh-------------CCCeEEEecCCC
Q 011576 138 ---------------GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLC-------------QGRRIFVVGDLN 189 (482)
Q Consensus 138 ---------------~~~~l~nvY~P~~~~~~~~r~~~k~~fl~~L~~~i~~l~~-------------~~~pvII~GDFN 189 (482)
..+.|+|+|+-..... ...|..+...|.+.++++.. ...|+|||||||
T Consensus 180 ~~~~~~~~~~~~~~~~~l~V~nTHL~~~p~~----~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFN 255 (398)
T 3ngq_A 180 ELFGAGMKPIHAADKQLLIVANAHMHWDPEY----SDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLN 255 (398)
T ss_dssp GGC-----------CCEEEEEEEECCCCTTC----HHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECS
T ss_pred cccccccccccCCCCcEEEEEEeCcCCCCCC----HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCC
Confidence 2489999999875432 24456666666666666532 346999999999
Q ss_pred CCCCc
Q 011576 190 IAPAA 194 (482)
Q Consensus 190 ~~~~~ 194 (482)
+.++.
T Consensus 256 s~P~s 260 (398)
T 3ngq_A 256 SLPDS 260 (398)
T ss_dssp CCTTS
T ss_pred CCCCC
Confidence 98864
No 24
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=8.5e-18 Score=187.28 Aligned_cols=81 Identities=21% Similarity=0.399 Sum_probs=34.9
Q ss_pred CEEEEeeccCc--c-------------ccccccchHHHHHhhcCCcEEEEecccccc-cchhhHHHhhcCCcEEEeeccc
Q 011576 1 MKIVTYNVNGL--R-------------QRVSQFGSLRKLLDSFDADIICFQETKLRR-QELKSDLVMADGYESFFSCTRT 64 (482)
Q Consensus 1 mrIlTwNVnGl--~-------------~~~~r~~~l~~~L~~~~pDII~LQEtk~~~-~~l~~~l~~~~gY~~~~s~~~~ 64 (482)
+++++||+... . .+..|+..|.+.|..++||||||||+.... ..+....+...||..++.....
T Consensus 395 ~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~~l~~~l~~~gY~~~~~~~~~ 474 (727)
T 4b8c_D 395 FTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFHAKAR 474 (727)
T ss_dssp -------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCHHHHHTTTCC-------CEEC-----
T ss_pred eeeeeccccccccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCHHHHHHHHHHHHHhCCccEEEeccCC
Confidence 46889999741 1 122344569999999999999999997531 1221223456688877642210
Q ss_pred C----CCCCCcceEEEEEEec
Q 011576 65 S----DKGRTGYSGVATFCRV 81 (482)
Q Consensus 65 ~----~~g~~g~~GVAIlsR~ 81 (482)
. ..+.+++.|+|||+|.
T Consensus 475 ~~~~~~~~~~~~~G~AI~y~~ 495 (727)
T 4b8c_D 475 AKTMHSKDSKKVDGCCIFFKR 495 (727)
T ss_dssp -----------CCCCEEEC--
T ss_pred cccccccCCCCcccEEEEEEc
Confidence 0 0112335799999775
No 25
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.65 E-value=7.4e-16 Score=149.89 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=78.5
Q ss_pred CEEEEeeccCccccccccchHHHHHhhc--CCcEEEEeccccccc-chh---hHHHh--hcCCcEEEeecccCCCCC-Cc
Q 011576 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF--DADIICFQETKLRRQ-ELK---SDLVM--ADGYESFFSCTRTSDKGR-TG 71 (482)
Q Consensus 1 mrIlTwNVnGl~~~~~r~~~l~~~L~~~--~pDII~LQEtk~~~~-~l~---~~l~~--~~gY~~~~s~~~~~~~g~-~g 71 (482)
|||+||||+.+.....+...+.+.|.+. +||||||||+..... .+. +.+.. ..+|..+.... .+. .+
T Consensus 1 lrv~s~NI~~~g~~~~~~~~~~~~i~~~~~~~DIv~LQEv~~~~~~~~~~l~~~L~~~~~~~y~~v~~~~----~~~~~~ 76 (260)
T 2a40_B 1 LKIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEP----LGRNSY 76 (260)
T ss_dssp CEEEEEEEEEESHHHHHSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCC----BCSSSC
T ss_pred CEEEEEehhhhCCCccchHHHHHHHHHHhccCCEEEEEEEEcCchhHHHHHHHHHHhccCCCcEEEEccc----CCCCCC
Confidence 7999999986532211212345555543 899999999975321 121 11111 13476665432 122 12
Q ss_pred ceEEEEEEeccCCCCCcccccceeeeecccccccccCcccccCccccccccccccCCCCCEEEEe-----eCeEEEEEEE
Q 011576 72 YSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITD-----HGHFILFNVY 146 (482)
Q Consensus 72 ~~GVAIlsR~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eGR~i~v~-----~~~~~l~nvY 146 (482)
..++|+++|.+ .+.+..... +.. .|... +- ..+....+..... ...|+|+++|
T Consensus 77 ~~~~~~ly~~~----------~v~~~~~~~-~~~--~~~~~-~~--------~~~~R~p~~~~~~~~~~~g~~~~vi~~H 134 (260)
T 2a40_B 77 KERYLFLFRPN----------KVSVLDTYQ-YDD--GCESC-GN--------DSFSREPAVVKFSSHSTKVKEFAIVALH 134 (260)
T ss_dssp CBEEEEEECTT----------TCEEEEEEE-CCT--TSTTT-HH--------HHCSSCCEEEEEECTTSSSSEEEEEECC
T ss_pred cEEEEEEEcCc----------eeEecCcee-ccC--CCcCC-CC--------CceeeCCEEEEEEeCCCCCceEEEEEec
Confidence 24689999874 122211110 000 00000 00 0011122222222 2469999999
Q ss_pred ecCCCCCChhhHHHHHHHHHHHHHHHHHHH--hCCCeEEEecCCCCCCC
Q 011576 147 GPRADSEDTVRIQFKLQFFHVLQKRWEFLL--CQGRRIFVVGDLNIAPA 193 (482)
Q Consensus 147 ~P~~~~~~~~r~~~k~~fl~~L~~~i~~l~--~~~~pvII~GDFN~~~~ 193 (482)
++.... .. ..+.|.+.+..+. ....|+|||||||..+.
T Consensus 135 l~~~~~-----~~----q~~~l~~~~~~~~~~~~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 135 SAPSDA-----VA----EINSLYDVYLDVQQKWHLNDVMLMGDFNADCS 174 (260)
T ss_dssp CCGGGH-----HH----HHHHHHHHHHHHHHHHCCCCEEEEEECCCSTT
T ss_pred CCCCCc-----HH----HHHHHHHHHHHHHHhCCCCCEEEEecCCCCCc
Confidence 986432 11 1333444433322 24689999999998654
No 26
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.63 E-value=2.3e-15 Score=145.09 Aligned_cols=150 Identities=15% Similarity=0.175 Sum_probs=86.9
Q ss_pred CEEEEeeccCccccccc--cchHHHHHhhcC-CcEEEEecccccc------------cchh-hHHHhhcC------CcEE
Q 011576 1 MKIVTYNVNGLRQRVSQ--FGSLRKLLDSFD-ADIICFQETKLRR------------QELK-SDLVMADG------YESF 58 (482)
Q Consensus 1 mrIlTwNVnGl~~~~~r--~~~l~~~L~~~~-pDII~LQEtk~~~------------~~l~-~~l~~~~g------Y~~~ 58 (482)
+||+|||++|-...... ...+.++|...+ +|||+|||+...+ .... .+++...| +.++
T Consensus 16 ~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v~E~~w~lGt~srp~~~yi 95 (262)
T 2f1n_A 16 FRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWNLSTNSRPQQVYI 95 (262)
T ss_dssp CCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEECCSSSSSCEEEE
T ss_pred eEEEEEEcCCCCCCCcccccccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCHHHHHHHhCCCCCCceEEE
Confidence 58999999996532211 124888999988 9999999997321 0000 11222333 6554
Q ss_pred EeecccCCCCCCcceEEEEEEeccCCCCCcccccceeeeecccccccccCcccccCccccccccccccCCCCCEEEEeeC
Q 011576 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHG 138 (482)
Q Consensus 59 ~s~~~~~~~g~~g~~GVAIlsR~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eGR~i~v~~~ 138 (482)
|..... .+ .+..|+||++|.+. . +.+. ++. | .......+.+.++
T Consensus 96 Y~~~~D--~~-~~r~nlAIlSr~~a-----------d--ev~v-Lp~---~----------------~~~~Rp~lgiri~ 139 (262)
T 2f1n_A 96 YFSAVD--AL-GGRVNLALVSNRRA-----------D--EVFV-LSP---V----------------RQGGRPLLGIRIG 139 (262)
T ss_dssp EEECSC--SS-SCSSCEEEEESSCC-----------S--EEEE-ECC---S----------------STTCCCEEEEEET
T ss_pred EEeecc--CC-CCceeeEEEEcccc-----------c--ceEE-CCC---C----------------CCCCCceEEEEEC
Confidence 444321 22 34569999999842 2 1110 000 0 0113344557788
Q ss_pred eEEEEEEEecCCCCCChhhHHHHHHHHHHHHHHHHHHHhCC-----CeEEEecCCCCCCCc
Q 011576 139 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLLCQG-----RRIFVVGDLNIAPAA 194 (482)
Q Consensus 139 ~~~l~nvY~P~~~~~~~~r~~~k~~fl~~L~~~i~~l~~~~-----~pvII~GDFN~~~~~ 194 (482)
..+++|+|+-..+.. ++ ....+.+.+++.. ... .||||+||||..|+.
T Consensus 140 ~~~ff~tHa~a~~g~--da----~a~v~~I~~~~~~--~~~~~~~~~pwii~GDFNr~P~s 192 (262)
T 2f1n_A 140 NDAFFTAHAIAMRNN--DA----PALVEEVYNFFRD--SRDPVHQALNWMILGDFNREPAD 192 (262)
T ss_dssp TEEEEEEECCSSSSC--SH----HHHHHHHHHHHHT--CSSHHHHTCEEEEEEECSSCHHH
T ss_pred CEEEEEEEecCCCCc--cH----HHHHHHHHHHHhc--CcccccCCCcEEEEecCCCCCcc
Confidence 899999999887432 22 2234444444432 122 499999999987654
No 27
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.61 E-value=7.9e-15 Score=142.62 Aligned_cols=150 Identities=17% Similarity=0.143 Sum_probs=80.9
Q ss_pred CEEEEeeccCccccc--cccchHHHHHhh-cCCcEEEEecccccccc-hh-hHH------------Hh-----hcCCcEE
Q 011576 1 MKIVTYNVNGLRQRV--SQFGSLRKLLDS-FDADIICFQETKLRRQE-LK-SDL------------VM-----ADGYESF 58 (482)
Q Consensus 1 mrIlTwNVnGl~~~~--~r~~~l~~~L~~-~~pDII~LQEtk~~~~~-l~-~~l------------~~-----~~gY~~~ 58 (482)
+||+||||+|-.... ++...+.++|+. .+|||++|||+...... .. ..+ +. ..++.++
T Consensus 5 ~kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DIlaLQEa~~~p~~~~~~~r~~~~~g~~v~e~~w~lg~~~r~~~~yi 84 (261)
T 1sr4_B 5 FKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGTRSRPNMVYI 84 (261)
T ss_dssp SCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEESSCSSSCCEEEE
T ss_pred cEEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCEEEEecCCCCCCccccchhhhcccCCchhhhhhhcccccCCCceEE
Confidence 689999999843322 211148999999 88999999999653211 00 000 00 1133333
Q ss_pred EeecccCCCCCCcceEEEEEEeccCCCCCcccccceeeeecccccccccCcccccCccccccccccccCCCCC-EEEEee
Q 011576 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVITDH 137 (482)
Q Consensus 59 ~s~~~~~~~g~~g~~GVAIlsR~~~~f~~~~~~~pi~v~~g~~g~~~~~~p~~~~gl~~~~~~~~~~~D~eGR-~i~v~~ 137 (482)
+.... ....+..|+||++|.++ ....-+. .| ..+.+.| .+.+..
T Consensus 85 y~~~~---d~~~g~~g~AIlSR~~~-----------~~v~~l~------~~---------------~~~~~~R~~l~i~i 129 (261)
T 1sr4_B 85 YYSRL---DVGANRVNLAIVSRRQA-----------DEAFIVH------SD---------------SSVLQSRPAVGIRI 129 (261)
T ss_dssp EEECC---CTTTSCSCEEEEESSCC-----------SEEEEEC------CC---------------CCSSCCCCEEEEEE
T ss_pred EEEee---cCCCCccceEEEEccch-----------hceEEcC------CC---------------CCCCcCcceEEEEE
Confidence 32221 11224569999999842 1111010 00 0011233 345667
Q ss_pred CeEEEEEEEecCCCCCChhhHHHHHHHHHHHHHHHHHHH-hCC---CeEEEecCCCCC
Q 011576 138 GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQKRWEFLL-CQG---RRIFVVGDLNIA 191 (482)
Q Consensus 138 ~~~~l~nvY~P~~~~~~~~r~~~k~~fl~~L~~~i~~l~-~~~---~pvII~GDFN~~ 191 (482)
+.+.++++|+...+. .++ ......|.+++.... ..+ .++||+||||..
T Consensus 130 ~g~~f~s~Hl~~~~~--~ea----~~~v~~I~~~~~~~~~~~~~~~~~~ii~GDFN~~ 181 (261)
T 1sr4_B 130 GTDVFFTVHALATGG--SDA----VSLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRA 181 (261)
T ss_dssp TTEEEEEEECCTTTT--TTH----HHHHHHHHHHHHC---CGGGGGCEEEEEEECSSC
T ss_pred CCeEEEEeCCCCCCC--chH----HHHHHHHHHHHHhcccCCcccCCcEEEEeeCCCC
Confidence 779999999988752 122 223344444443210 013 699999999975
No 28
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.44 E-value=5.3e-13 Score=132.17 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=26.4
Q ss_pred CEEEEeeccCccccccccchHHHHHh---hcCCcE--EEEeccccc
Q 011576 1 MKIVTYNVNGLRQRVSQFGSLRKLLD---SFDADI--ICFQETKLR 41 (482)
Q Consensus 1 mrIlTwNVnGl~~~~~r~~~l~~~L~---~~~pDI--I~LQEtk~~ 41 (482)
|+|+||||++..... .+.+++. ...||| |||||+...
T Consensus 9 i~V~T~Nv~~~~~~~----~l~~wl~~~~~~~pDI~viglQEv~~~ 50 (282)
T 2imq_X 9 VHTVSWNSGHERAPT----NLEELLGLNSGETPDVIAVAVQGFGFQ 50 (282)
T ss_dssp EEEEEEEEETCCCCS----CCHHHHTCTTSCCCSEEEEEEEESCTT
T ss_pred EEEEEEeCCCCcCch----hHHHHhcccccCCCCEEEEEeeeeccc
Confidence 589999998764321 2555554 688996 599999754
No 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.37 E-value=4.6e-12 Score=128.85 Aligned_cols=34 Identities=35% Similarity=0.464 Sum_probs=27.0
Q ss_pred CEEEEeeccCccccccccchHHHHHhh---cCCcE--EEEecc
Q 011576 1 MKIVTYNVNGLRQRVSQFGSLRKLLDS---FDADI--ICFQET 38 (482)
Q Consensus 1 mrIlTwNVnGl~~~~~r~~~l~~~L~~---~~pDI--I~LQEt 38 (482)
+.|+||||+|.... . .|.++|.. ..||| |||||+
T Consensus 27 i~v~TwNv~g~~~~--~--~l~~~L~~~~~~~~DI~viglQEi 65 (347)
T 1i9z_A 27 IFVASYNLNGCSAT--T--KLENWLFPENTPLADIYVVGFQEI 65 (347)
T ss_dssp EEEEEEECTTCCCC--S--CCHHHHSCSSSCCCSEEEEEEECS
T ss_pred EEEEeEecCCCCCc--h--hHHHHhccccCCCCCEEEEEeEEe
Confidence 47899999997641 1 38888874 68999 899997
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.28 E-value=7.5e-11 Score=120.28 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=43.9
Q ss_pred CEEEEeeccCccccccccchHHHHHh----hcCCcE--EEEecccccccchhhHHHhhcCCcEEEeecccCCCCCCcceE
Q 011576 1 MKIVTYNVNGLRQRVSQFGSLRKLLD----SFDADI--ICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSG 74 (482)
Q Consensus 1 mrIlTwNVnGl~~~~~r~~~l~~~L~----~~~pDI--I~LQEtk~~~~~l~~~l~~~~gY~~~~s~~~~~~~g~~g~~G 74 (482)
|.|+||||+|.+..... |.+++. ...||| |+|||+......+...+....|..+.+... ..-+..+
T Consensus 28 i~v~TwNv~g~~~~~~~---L~~~l~~~~~~~~pDI~viGlQEi~~~~~~W~~~l~~~L~~~Y~~v~s-----~~l~g~~ 99 (357)
T 2xsw_A 28 LFVATWNMQGQKELPPS---LDEFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLGPHYVLLSS-----AAHGVLY 99 (357)
T ss_dssp EEEEEEECTTCSSCCSC---CHHHHSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHHCTTEEEEEE-----EEETTEE
T ss_pred EEEEEEecCCCCCCccc---HHHHhccccccCCCCEEEEEeeeccchHHHHHHHHHHHhCCcccchhh-----hhhhhEE
Confidence 47899999996543222 666664 357896 889999765433333333334443322221 1123358
Q ss_pred EEEEEecc
Q 011576 75 VATFCRVK 82 (482)
Q Consensus 75 VAIlsR~~ 82 (482)
++||+|.+
T Consensus 100 l~Vfvr~~ 107 (357)
T 2xsw_A 100 MSLFIRRD 107 (357)
T ss_dssp EEEEEEGG
T ss_pred EEEEEchH
Confidence 99999985
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=98.96 E-value=1.2e-08 Score=101.68 Aligned_cols=37 Identities=38% Similarity=0.477 Sum_probs=28.8
Q ss_pred CEEEEeeccCccccccccchHHHHHhh--cCCc--EEEEeccccc
Q 011576 1 MKIVTYNVNGLRQRVSQFGSLRKLLDS--FDAD--IICFQETKLR 41 (482)
Q Consensus 1 mrIlTwNVnGl~~~~~r~~~l~~~L~~--~~pD--II~LQEtk~~ 41 (482)
|.|+||||||.+.+ . .+.+||.. ..|| ||+|||+.+.
T Consensus 10 i~v~TwNvng~~~~-~---~l~~wL~~~~~~pDI~viGlQE~~l~ 50 (313)
T 3mtc_A 10 FFAGTYNVNGQSPK-E---CLRLWLSNGIQAPDVYCVGFQELDLS 50 (313)
T ss_dssp EEEEEEECTTCCCC-S---CTHHHHSSSCCCCSEEEEEEECSCCS
T ss_pred EEEEEEEcCCccCc-h---hHHHHhcccCCCCCeEEEEEEecccc
Confidence 35789999998652 2 38888875 6799 7999999764
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=98.67 E-value=5.6e-07 Score=89.89 Aligned_cols=70 Identities=19% Similarity=0.142 Sum_probs=41.1
Q ss_pred EEEEeeccCccccccccchHHHHHhh-------------cCCcEE--EEecccccccchhhHH---Hh---hcCCcEEEe
Q 011576 2 KIVTYNVNGLRQRVSQFGSLRKLLDS-------------FDADII--CFQETKLRRQELKSDL---VM---ADGYESFFS 60 (482)
Q Consensus 2 rIlTwNVnGl~~~~~r~~~l~~~L~~-------------~~pDII--~LQEtk~~~~~l~~~l---~~---~~gY~~~~s 60 (482)
-|.||||+|...+. .|.+||.- ..|||+ +|||.-.........+ +. ...|..+.+
T Consensus 11 ~vgTwNv~g~~p~~----~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~v~s 86 (316)
T 4a9c_A 11 FIGTWNMGSVPPPK----NVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAM 86 (316)
T ss_dssp EEEEEECTTSCCCS----CCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred EEEEeEcCCcCCCc----chhHhhcccccccCcccccccCCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEEEEe
Confidence 57899999964332 27777752 347876 8999854333222211 11 135665554
Q ss_pred ecccCCCCCCcceEEEEEEecc
Q 011576 61 CTRTSDKGRTGYSGVATFCRVK 82 (482)
Q Consensus 61 ~~~~~~~g~~g~~GVAIlsR~~ 82 (482)
.. -+.-++++|+|.+
T Consensus 87 ~~-------L~gi~l~Vfvk~~ 101 (316)
T 4a9c_A 87 QS-------LWNIKVAVLVKPE 101 (316)
T ss_dssp EE-------ETTEEEEEEECGG
T ss_pred ee-------ehheeeeeEEeHH
Confidence 22 2235788999885
Done!