BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011577
(482 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297741628|emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 299/487 (61%), Positives = 364/487 (74%), Gaps = 20/487 (4%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
MEAG N+LSS PSFP RT + +SSSSVLM ++Q APAVAS+PT+ +AR FP
Sbjct: 1 MEAGTNILSSTPSFPPRTHFR---------NSSSSVLMLHDQVAPAVASIPTT-IARKFP 50
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120
TSVLLQEQRDEYRP K+++T QAT + R +E +E+NS D +Q + + E Q
Sbjct: 51 TSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEI-VVSADEENSDDHNQYMVNFERQL 109
Query: 121 LHWPDLWNLSPPMKRGE-DPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAAS 179
L P LW P + GE P S M+S++ D E S+D +P D +ALA+KALSASK+A S
Sbjct: 110 LLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVS 169
Query: 180 LAENPKLNGAEFTD-----ISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHE 234
L EN KL GA+ D + SS PLEE K R LERRSKKR+ P+V HE
Sbjct: 170 LYENAKLLGADLEDSPSPSLGAISSPNLPLEE-KTVRSTRLLERRSKKRR--NPKVAVHE 226
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
+ SR+A V++K++EG+D DPLRLFLWGPETRKLLTA EE ELI QIQ+L+RLE+ K +
Sbjct: 227 NHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKR 286
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
LQS REPT++EWA+A+GLSC+ L+S+LHSGN SR+KLI ANLR+VVH+AKQYQGRG++
Sbjct: 287 LQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLN 346
Query: 355 LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLL 414
L DLLQEGSMGLM SVEKFKP AGCRFASYAYWW+RQ +RKAIFQHSRTIRLPEN+Y+LL
Sbjct: 347 LQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLL 406
Query: 415 SKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 474
KV EAKRL+IQEG+H P KE++A RVGIT+EKL+RL+ TRMPLSMQQPVWADQDTTFQ
Sbjct: 407 GKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQ 466
Query: 475 STFLDAA 481
D
Sbjct: 467 EVTADTG 473
>gi|359481391|ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust.
Identities = 298/489 (60%), Positives = 364/489 (74%), Gaps = 13/489 (2%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSS--VLMHNEQSAPAVASVPTSSVARH 58
MEAG N+LSS PSFP RT ++S SS + VLM ++Q APAVAS+PT+ +AR
Sbjct: 1 MEAGTNILSSTPSFPPRTHFRNSSSSGNAFFFYVVLFVLMLHDQVAPAVASIPTT-IARK 59
Query: 59 FPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEH 118
FPTSVLLQEQRDEYRP K+++T QAT + R +E +E+NS D +Q + + E
Sbjct: 60 FPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEI-VVSADEENSDDHNQYMVNFER 118
Query: 119 QFLHWPDLWNLSPPMKRGE-DPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEA 177
Q L P LW P + GE P S M+S++ D E S+D +P D +ALA+KALSASK+A
Sbjct: 119 QLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQA 178
Query: 178 ASLAENPKLNGAEFTD-----ISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTN 232
SL EN KL GA+ D + SS PLEE K R LERRSKKR+ P+V
Sbjct: 179 VSLYENAKLLGADLEDSPSPSLGAISSPNLPLEE-KTVRSTRLLERRSKKRR--NPKVAV 235
Query: 233 HETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
HE + SR+A V++K++EG+D DPLRLFLWGPETRKLLTA EE ELI QIQ+L+RLE+ K
Sbjct: 236 HENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVK 295
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
+LQS REPT++EWA+A+GLSC+ L+S+LHSGN SR+KLI ANLR+VVH+AKQYQGRG
Sbjct: 296 KRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRG 355
Query: 353 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYT 412
++L DLLQEGSMGLM SVEKFKP AGCRFASYAYWW+RQ +RKAIFQHSRTIRLPEN+Y+
Sbjct: 356 LNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYS 415
Query: 413 LLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTT 472
LL KV EAKRL+IQEG+H P KE++A RVGIT+EKL+RL+ TRMPLSMQQPVWADQDTT
Sbjct: 416 LLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTT 475
Query: 473 FQSTFLDAA 481
FQ D
Sbjct: 476 FQEVTADTG 484
>gi|224068757|ref|XP_002326192.1| predicted protein [Populus trichocarpa]
gi|222833385|gb|EEE71862.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 288/479 (60%), Positives = 358/479 (74%), Gaps = 34/479 (7%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
MEAGR LLSS PSFP+RT +K+SL+SS VL+ EQ+ PAV+S+PT+S A+HFP
Sbjct: 1 MEAGRTLLSSSPSFPTRTHLKNSLTSS--------VLILREQATPAVSSIPTTSTAQHFP 52
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120
TSVLLQEQRDE+RPL ++FKED+ SQAT D R E E K+S +LDQLV++ E+Q
Sbjct: 53 TSVLLQEQRDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQL 112
Query: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180
HWP WNL T++ +D EP + + LA++ALSASK AA L
Sbjct: 113 HHWPAYWNL----------------------TDKLIDVEPTNVINLAKRALSASKHAAFL 150
Query: 181 AENPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRK 240
A+N + +++ TSS + LEEVK R L R+S R+ K + ETY+S+
Sbjct: 151 ADN----NTDLDNLASTSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKS 206
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A ++K+LS+GFD NDPLRLFLWGPET++LLTA EEFELIAQIQDL+ LE K++L+SQFG
Sbjct: 207 ADIQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFG 266
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
REPTL+EWA+A+GLSC LK +LHSGN SREKLINANLR+VVH+AK+YQ RG+ L DLLQ
Sbjct: 267 REPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQ 326
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 420
EG++GLMKS+EKFKPQAGCRFA+YAYWW+RQTI KAIFQHSRTIRLPEN+Y LL KV+EA
Sbjct: 327 EGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEA 386
Query: 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
KR YIQEGNH P E++ARRVGI ++KLE+L+ TR PLSMQQ VW+DQ+TTFQ D
Sbjct: 387 KRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITAD 445
>gi|255556952|ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 548
Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 288/480 (60%), Positives = 353/480 (73%), Gaps = 23/480 (4%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
ME R LSSPP FPSRT K+SLSSS + + ++H EQ+ PAV S PT+S+AR+FP
Sbjct: 1 METARTFLSSPPPFPSRTHFKNSLSSSDAYVDNFVFMLH-EQAVPAVTSAPTTSIARNFP 59
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120
TSVLLQEQRDE+RPLL++FKEDKT QAT D++ ++ E S LDQL+ H
Sbjct: 60 TSVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTSDQEGICSDVLDQLIL---HSN 116
Query: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180
L W SLTMQS++ +T+E + EP + + LARKALSASKEAA L
Sbjct: 117 LSW------------------SLTMQSITTNTDELMVVEPTNVIDLARKALSASKEAALL 158
Query: 181 AEN-PKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSR 239
A+ L+ T + T + LEEVK R LER+SK R+V+K + HE Y+SR
Sbjct: 159 AQKCANLDDTVSTGLEPTDLSNFSLEEVKTVRSTRRLERQSKNRRVTKTKEIFHEPYSSR 218
Query: 240 KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 299
+A V+KK++EGFD DPLRLFLWGPET++LLTA EE ELI Q+QDL+ LE K K + QF
Sbjct: 219 RAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKFKLQF 278
Query: 300 GREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
GR+PTL+EWA A+GLS ++S+LHSGN SREKLINANLR+VVH+AKQYQGRG+SL DLL
Sbjct: 279 GRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQDLL 338
Query: 360 QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLE 419
QEGSMGLMKS+EKFKPQ GCRFA+YAYWW+RQT+RKAIFQHSRTIRLPEN+Y L KV E
Sbjct: 339 QEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLGKVSE 398
Query: 420 AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
AKR YI EGNH+P KE+LA+R+GIT +LERL+++ RMPLSMQQ VWADQ+TTFQ D
Sbjct: 399 AKRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVWADQETTFQEITAD 458
>gi|356536959|ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 571
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 277/487 (56%), Positives = 352/487 (72%), Gaps = 14/487 (2%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
ME R + S P FP RT H S+ SSSS+SSVLM +EQ++P VAS ++ A++FP
Sbjct: 1 MEFARTMFCSSPPFPPRTH--HPWSTLPSSSSTSSVLMLHEQASPTVASWSSNFSAQNFP 58
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120
SVLL EQRDEYRPLLHM KEDKTSQA +R ++T EE N+ + DQ+V D
Sbjct: 59 ASVLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVTVH-EENNTENADQVVLDFRKHL 117
Query: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180
HWP+L S + GE + S T++ +S D E + F+ V+LA+KALS SK+ +S+
Sbjct: 118 HHWPNLQLTSSQI--GE-VAASSTLEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSV 174
Query: 181 AENPKLNGAEFTDISLTS-SLGYP-LEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNS 238
E+ K A+ SL S SL P + K R LERRSK+RKV K +V + ETY +
Sbjct: 175 VEDLKSIKADDVPFSLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLA 234
Query: 239 RKASVKKKL------SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
RK ++KL +E D++DPLRLFLWGPET++LLT ++E +LI+QIQDL+RLE+ K
Sbjct: 235 RKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLEEVK 294
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
+ LQSQFGREPT+ EWA+ GL+CR L+S+LHSGN SREKLI ANLR+VVHVAK YQGRG
Sbjct: 295 TNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQGRG 354
Query: 353 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYT 412
+SL DLLQEGSMGLMKSVEKF P AG RF +YA+WW+RQ IRKA+F+HSRTIRLPE ++
Sbjct: 355 LSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFI 414
Query: 413 LLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTT 472
LL KV+EAK+LYIQEGN P KE+LARRVG+TVEK+++L+F R+P+SMQQ VWADQ+TT
Sbjct: 415 LLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTT 474
Query: 473 FQSTFLD 479
FQ D
Sbjct: 475 FQEITAD 481
>gi|356548319|ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD [Glycine max]
Length = 574
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 268/489 (54%), Positives = 345/489 (70%), Gaps = 15/489 (3%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
ME R + S P FP RT H ++ SSS+SVLM EQ++P VAS ++ A++FP
Sbjct: 1 MEFSRTMFCSSPPFPPRT---HHPWNTLPLSSSTSVLMLREQASPTVASWSSNFSAQNFP 57
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120
SVLLQEQRDEYRPLLHM KEDKTSQA +R ++T EE N+ + DQ+V D
Sbjct: 58 ASVLLQEQRDEYRPLLHMSKEDKTSQAMLSTRQMDT-VMVHEENNTENADQVVLDFRKHL 116
Query: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180
+WP L NL + GE S S T+Q +S+D + + + V+LA+KALS SK+ +S+
Sbjct: 117 HYWPHLQNLLASSQTGE-ISASSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSV 175
Query: 181 AENPKLNGAEFTDISL---TSSLGYP-LEEVKQFSQPRFLERRSKKRKVSKPQVTNHETY 236
E+ K A+ I ++ L P + K R LERRSK+RKV K +V + ETY
Sbjct: 176 VEDLKSIKADDDSIPFGLASTGLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETY 235
Query: 237 NSRKAS------VKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK 290
+RK V+KK +E D+NDPL FL GPET++LLT ++E +LI+QIQDL+RLE+
Sbjct: 236 LARKDDAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQLLTLEQESQLISQIQDLLRLEE 295
Query: 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG 350
K+KLQSQFGREPT+ EWA+ +GL+CR L ++L SG+ SREKLI ANLR+VVHVAK YQG
Sbjct: 296 VKTKLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSGSRSREKLIQANLRMVVHVAKSYQG 355
Query: 351 RGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENI 410
RG+SL DLLQEGSMGLMKSVEKF P G RF +YA+WW+RQ IRKA+F+HSRTIRLPE +
Sbjct: 356 RGLSLQDLLQEGSMGLMKSVEKFNPLVGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKV 415
Query: 411 YTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
+ LL KV+EAK+LYIQEGN P KE+LARRVG+TVEK+++L+F R+P+SMQQ VWADQ+
Sbjct: 416 FILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQN 475
Query: 471 TTFQSTFLD 479
TTFQ D
Sbjct: 476 TTFQEITAD 484
>gi|449451030|ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
gi|449482444|ref|XP_004156283.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
Length = 562
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 262/487 (53%), Positives = 335/487 (68%), Gaps = 21/487 (4%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSS-------VLMHNEQSAPAVASVPTS 53
MEAG NLLSS F SR + L+ S SS++S S V M EQ++PA
Sbjct: 1 MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPA------- 53
Query: 54 SVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLV 113
R+F TS L QEQ E RP + K+D++SQ T + R IE + ++E + D D L+
Sbjct: 54 ---RYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIE-RSVPIDEGSRDDHDHLI 109
Query: 114 QDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSA 173
+L+HQ + WP L + PP++ E S+ +S + E V EP + +ALA+KALSA
Sbjct: 110 WELKHQAVEWPGLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSA 169
Query: 174 SKEAASLAENPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNH 233
SK+AA L + +L G SL SL +E + R +RRSKKRKV K T
Sbjct: 170 SKQAALLVDETELVGTSLDYSSLDDSLS---KEGRTVRSTRLQDRRSKKRKVPKHVTTID 226
Query: 234 ETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
E N R ++K SE FD NDPLRLFLWGPET+KLLTA EE ELI QIQDL+ L+ K+
Sbjct: 227 EISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKA 286
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
+LQSQF REPTL+EWA+A+G++C+ L+S+LH +SREKLINANLR+VVH+AKQYQGRG+
Sbjct: 287 RLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGL 346
Query: 354 SLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTL 413
SLHDLLQ GS+GLMKSVEKFKPQAGCRF SYAYWW+R +I KAIFQHSRTIRLPEN+Y L
Sbjct: 347 SLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYAL 406
Query: 414 LSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
L KV EAK +++ GN+ P KE+LA RVGITVE+ ++L+F++R+P S+QQPVWADQ+TTF
Sbjct: 407 LGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTF 466
Query: 474 QSTFLDA 480
Q D+
Sbjct: 467 QEITADS 473
>gi|312282671|dbj|BAJ34201.1| unnamed protein product [Thellungiella halophila]
Length = 547
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 260/489 (53%), Positives = 328/489 (67%), Gaps = 38/489 (7%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
MEA RNL+SS PSF ++T +K S SS SS V++H + + P V S +S++RHFP
Sbjct: 1 MEATRNLVSSSPSFQTKTHLK-----SGFSSPSSVVMLHEQTATPVVNSRHLTSLSRHFP 55
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLV-----QD 115
SVL QE R+E +PL H +ED+TSQ T + R D+LV +
Sbjct: 56 ASVLSQELREESKPLSHALREDRTSQLTLERRQ---------------FDELVSSREDEK 100
Query: 116 LEHQFLHWPDLWNL--SPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSA 173
E Q LH LWNL SP + P+V S DA+ D VALA+KALSA
Sbjct: 101 FEQQLLHSAGLWNLLISPLTTEKQLPAV----------VSPSADADLCDLVALAQKALSA 150
Query: 174 SKEAASLAENPKLNGAEF-TDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTN 232
SK+AA L EN + + + D TSS E+ R LERR+K R+ K +
Sbjct: 151 SKQAALLVENSEADPPDNPRDSLSTSSSMSLPEKGTIVRSKRQLERRAKNRRAPKSNNMD 210
Query: 233 HETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
E Y +K + KKK+ +GFD +D L+LFLWGPET++LLTA EE ELIA IQ LI+LEK K
Sbjct: 211 SEGYVPQKINAKKKMKQGFDTDDALQLFLWGPETKQLLTAKEEAELIAHIQHLIKLEKVK 270
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
+KL+SQ G EPT+ EWA+A+GLS LKSE+H G SSREKLI ANLRLVVH+AKQYQ RG
Sbjct: 271 TKLESQNGCEPTIGEWAEAMGLSSPVLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRG 330
Query: 353 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYT 412
++ DLLQEGSMGLMKSVEKFKPQ+GCRFA+YAYWW+RQ+IRK+IFQ+SRTIRLPEN+Y
Sbjct: 331 LNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYM 390
Query: 413 LLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTT 472
LL KV EA++ IQ+GN+ P KE LA VG++ EKL++L++ TR PLSMQQP+W+DQDTT
Sbjct: 391 LLGKVSEARKTCIQDGNYRPSKEQLASHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTT 450
Query: 473 FQSTFLDAA 481
FQ D+
Sbjct: 451 FQEVTPDSG 459
>gi|297827203|ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
gi|297327323|gb|EFH57743.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 258/489 (52%), Positives = 332/489 (67%), Gaps = 39/489 (7%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
MEA RNL+SS PSF ++T +K + SS SS V++H + + P V S +S++RHFP
Sbjct: 1 MEATRNLVSSSPSFQTKTHLK------SYSSPSSVVMLHEQTTTPVVNSRHLNSLSRHFP 54
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLV-----QD 115
SVL QE R+E RPL H +ED+TSQ T + R D+LV +
Sbjct: 55 ASVLSQEPREESRPLSHALREDRTSQLTLERRQ---------------FDELVSSREDEK 99
Query: 116 LEHQFLHWPDLWNL--SPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSA 173
E Q LH LWNL SP + P V + DAE D VALA+KALSA
Sbjct: 100 FEQQLLHSAGLWNLLISPLTAETKLPPVVPPL----------ADAELCDIVALAQKALSA 149
Query: 174 SKEAASLAENPKLNGAEFTDISLTSSLGYPLEEVKQFSQP-RFLERRSKKRKVSKPQVTN 232
SK+AA LA++ + N ++ T SL++S L E + R LERR+K R+ K +
Sbjct: 150 SKQAALLADDTEANPSDNTRGSLSTSSSMSLPEKGAIVRSKRQLERRAKNRRAPKSNDVD 209
Query: 233 HETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
+E Y +K + KKK +G D +D L+LFLWGPET++LLTA EE ELI+ IQ L++LEK K
Sbjct: 210 NEGYVPQKINAKKKFKQGVDTDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVK 269
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
+KL+SQ G EPT+ EWA+A+G+S DLKSE+H G SSREKLI ANLRLVVH+AKQYQ RG
Sbjct: 270 TKLESQNGCEPTIGEWAEAMGISSPDLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRG 329
Query: 353 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYT 412
++ DLLQEGSMGLMKSVEKFKPQ+GCRFA+YAYWW+RQ+IRK+IFQ+SRTIRLPEN+Y
Sbjct: 330 LNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYM 389
Query: 413 LLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTT 472
LL KV EA++ +QEGN+ P KE LA VG++ EKL++L++ TR PLSMQQP+W+DQDTT
Sbjct: 390 LLGKVSEARKTCVQEGNYRPSKEQLAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTT 449
Query: 473 FQSTFLDAA 481
FQ D+
Sbjct: 450 FQEITPDSG 458
>gi|18404292|ref|NP_565856.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
gi|75173811|sp|Q9LD95.1|SIGF_ARATH RecName: Full=RNA polymerase sigma factor sigF, chloroplastic;
Short=Sigma factor F; Short=Sigma-F; AltName:
Full=Protein SINGLET OXYGEN-LINKED DEATH ACTIVATOR 8;
AltName: Full=RNA polymerase sigma factor sig6;
Short=Atsig6; Short=Sigma factor 6; Flags: Precursor
gi|7209640|dbj|BAA92288.1| SigF [Arabidopsis thaliana]
gi|7688083|emb|CAB89775.1| sigma factor-like protein [Arabidopsis thaliana]
gi|16604647|gb|AAL24116.1| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20197948|gb|AAD31584.2| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20259557|gb|AAM14121.1| putative RNA polymerase sigma-70 factor protein [Arabidopsis
thaliana]
gi|330254238|gb|AEC09332.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
Length = 547
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 255/489 (52%), Positives = 330/489 (67%), Gaps = 38/489 (7%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
MEA RNL+SS PSF ++T +K S+ SS SS V++H++ + P V S +S++RHFP
Sbjct: 1 MEATRNLVSSSPSFQTKTHLK-----SSYSSPSSVVMLHDQTTTPVVNSRHLNSLSRHFP 55
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLV-----QD 115
SVL QE R+E RPL H ++D+TSQ T + R D+LV +
Sbjct: 56 ASVLSQEPREESRPLSHALRDDRTSQLTLERRQ---------------FDELVSSREDEK 100
Query: 116 LEHQFLHWPDLWNL--SPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSA 173
E Q LH LWNL SP + P+V + DAE D VALA+KALSA
Sbjct: 101 FEQQLLHSTGLWNLLISPLTSETKLPAVVSPL----------ADAELCDVVALAQKALSA 150
Query: 174 SKEAASLAENPKLNGAE-FTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTN 232
SK+AA L ++ + N ++ D TSS E+ R LERR+K R+ K +
Sbjct: 151 SKQAALLVDDTEANPSDNIKDSLSTSSSMSLPEKGNIVRSKRQLERRAKNRRAPKSNDVD 210
Query: 233 HETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
E Y +K S KKK +G D +D L+LFLWGPET++LLTA EE ELI+ IQ L++LEK K
Sbjct: 211 DEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVK 270
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
+KL+SQ G EPT+ EWA+A+G+S LKS++H G SSREKLI ANLRLVVH+AKQYQ RG
Sbjct: 271 TKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRG 330
Query: 353 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYT 412
++ DLLQEGSMGLMKSVEKFKPQ+GCRFA+YAYWW+RQ+IRK+IFQ+SRTIRLPEN+Y
Sbjct: 331 LNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYM 390
Query: 413 LLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTT 472
LL KV EA++ +QEGN+ P KE+LA VG++ EKL++L++ TR PLSMQQP+W+DQDTT
Sbjct: 391 LLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTT 450
Query: 473 FQSTFLDAA 481
FQ D+
Sbjct: 451 FQEITPDSG 459
>gi|357510769|ref|XP_003625673.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355500688|gb|AES81891.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 557
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 252/469 (53%), Positives = 325/469 (69%), Gaps = 34/469 (7%)
Query: 33 SSSVLMH-NEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKED-KTSQATSD 90
S SV+M ++Q+APA++S PT+ FPTSVLLQE RDEY+PLLH ED K QAT +
Sbjct: 15 SPSVMMPPHDQAAPALSSWPTT-----FPTSVLLQEHRDEYKPLLHTCNEDNKPPQATLN 69
Query: 91 SR-----NIETEAFFVEEKNSGDLDQLVQDLEHQF---LHWPDLWNLSPPMKRGEDPSVS 142
+R +I + + G +D V + HQ H +L SP E+ VS
Sbjct: 70 TRVTDMTSICEKIITGDGDGDGHVDVSVHNCMHQLHLRCHLQNLLASSP-----EEDFVS 124
Query: 143 LTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTD---ISLT-S 198
+ S S+ T D +DA+ LA++ALSASK+AA++A+ KL + D + L S
Sbjct: 125 SSSSSSSSSTMLPADGFQWDALTLAKQALSASKQAAAVAQELKLVKIDDDDSLPLGLADS 184
Query: 199 SLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVK------KKLSEGFD 252
SLG + K R ERRSK+RKVS +V + E Y ++K++V+ KKL EG D
Sbjct: 185 SLG----KNKIVRSIRLKERRSKQRKVSNSKVLDDEMYLTKKSNVQRRLRLEKKLKEGLD 240
Query: 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI 312
N LRLFLW PET++LL+ +EE +LIAQIQDL +L++ K KLQS FGREPTL EWA +
Sbjct: 241 GNHALRLFLWSPETKQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGV 300
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
GLSCRDL+ LH GN S++KLI+ANLRLVVH+AK YQGRG+SL DLLQEGSMGLM+SVEK
Sbjct: 301 GLSCRDLQKRLHCGNRSKDKLIHANLRLVVHIAKYYQGRGLSLQDLLQEGSMGLMRSVEK 360
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
FKPQAGCRF++YAYWW+RQTIR+A+F HS+TIRLPEN Y LL K+ EAK+ YI+EGN P
Sbjct: 361 FKPQAGCRFSTYAYWWIRQTIRRALFLHSKTIRLPENFYALLGKIAEAKKSYIKEGNLHP 420
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
KE++A+RVGITV++LE L+F TR PLSM++ VWAD DTTFQ D++
Sbjct: 421 TKEEIAKRVGITVDRLEMLLFSTRTPLSMERAVWADSDTTFQEITADSS 469
>gi|357440353|ref|XP_003590454.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355479502|gb|AES60705.1| RNA polymerase sigma factor [Medicago truncatula]
Length = 567
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 242/495 (48%), Positives = 333/495 (67%), Gaps = 30/495 (6%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
ME+ R + S P P RT ++L SS S +SVLM EQ AP V + TS +++FP
Sbjct: 1 MESARTMFCSSPLCPPRTHHWNTLPSS----SYTSVLMLREQVAPTVTAWCTSYSSQNFP 56
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKN-SGDLDQLVQDLEHQ 119
TSVLLQEQ DEYRPLLH+ K+DKT QAT ++R ++ + V+EKN + + DQ+ +D
Sbjct: 57 TSVLLQEQCDEYRPLLHISKKDKTCQATLNTRQMDMVS--VQEKNDTSNTDQVARDFRQH 114
Query: 120 FLHWPDLWNLSPPMKRGE-DPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAA 178
P L NL + GE D S +L + D+ +AV+L+++A S +++
Sbjct: 115 LHLLPRLENLLTSSQTGEMDGSSTL----------QHADSLQCNAVSLSKQAASVAEDLI 164
Query: 179 SL-AENPKLNGAEF-----TDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTN 232
S+ A+ N F + ++ +SS L K R ERR+K+RKV K +V +
Sbjct: 165 SIKADEDADNSIPFGLVPPSCLASSSSAEPLLGGNKTVRSTRLRERRAKERKVPKLKVKD 224
Query: 233 HETY------NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286
ETY K V+KK+S+G +++DPL FL PE+++LLT+++E +L+ QIQ+L+
Sbjct: 225 KETYLDGKDAAEEKLQVQKKISKGMNQSDPLNKFLQSPESKQLLTSEQESQLVVQIQELL 284
Query: 287 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAK 346
RLE K+ LQSQFGREPT+ EWA+ GL+CR +K++L GN SREKLI ANLRLV ++AK
Sbjct: 285 RLEDLKTSLQSQFGREPTMAEWAEGAGLNCRKMKAQLRCGNRSREKLIQANLRLVHYIAK 344
Query: 347 QYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 406
YQGRG+S+ DLLQEGS GL+KS++KFK QAGCRFASYAYWW++Q IRKAI+ HSRTIRL
Sbjct: 345 SYQGRGLSIEDLLQEGSTGLIKSIKKFKTQAGCRFASYAYWWIKQAIRKAIYNHSRTIRL 404
Query: 407 PENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVW 466
PE +Y LSKVLEAK+LY +EGN +P KE+LARRVGI+ +K++RL+F+ R+P+SMQ V
Sbjct: 405 PEKVYNKLSKVLEAKKLYKEEGNLNPTKEELARRVGISPDKVDRLLFVARIPISMQNTVG 464
Query: 467 ADQDTTFQSTFLDAA 481
++ DTTFQ D A
Sbjct: 465 SETDTTFQEITADCA 479
>gi|6273430|emb|CAB60192.1| putative sigma-like transcription factor [Arabidopsis thaliana]
Length = 487
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 224/424 (52%), Positives = 286/424 (67%), Gaps = 33/424 (7%)
Query: 66 QEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLV-----QDLEHQF 120
QE R+E RPL H ++D+TSQ T + R D+LV + E Q
Sbjct: 1 QEPREESRPLSHALRDDRTSQLTLERRQ---------------FDELVSSREDEKFEQQL 45
Query: 121 LHWPDLWNL--SPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAA 178
LH LWNL SP + P+V + DAE D VALA+KALSASK+AA
Sbjct: 46 LHSTGLWNLLISPLTSETKLPAVVSPL----------ADAELCDVVALAQKALSASKQAA 95
Query: 179 SLAENPKLNGAE-FTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYN 237
L ++ + N ++ D TSS E+ R LERR+K R+ K + E Y
Sbjct: 96 LLVDDTEANPSDNIKDSLSTSSSMSLPEKGNIVRSKRQLERRAKNRRAPKSNDVDDEGYV 155
Query: 238 SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297
+K S KKK +G D +D L+LFLWGPET++LLTA EE ELI+ IQ L++LEK K+KL+S
Sbjct: 156 PQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLES 215
Query: 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
Q G EPT+ EWA+A+G+S LKS++H G SSREKLI ANLRLVVH+AKQYQ RG++ D
Sbjct: 216 QNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQD 275
Query: 358 LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKV 417
LLQEGSMGLMKSVEKFKPQ+GCRFA+YAYWW+RQ+IRK+IFQ+SRTIRLPEN+Y LL KV
Sbjct: 276 LLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKV 335
Query: 418 LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTF 477
EA++ +QEGN+ P KE+LA VG++ EKL++L++ TR PLSMQQP+W+DQDTTFQ
Sbjct: 336 SEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEIT 395
Query: 478 LDAA 481
D+
Sbjct: 396 PDSG 399
>gi|356514352|ref|XP_003525870.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 360
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/270 (66%), Positives = 223/270 (82%), Gaps = 9/270 (3%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKL------SEGFDRNDPLRLFLWGPETR 267
R LERRSK+RKV K +V + ETY +RK ++KL +E D++DPLRLFLWGPET+
Sbjct: 79 RLLERRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEEHDQDDPLRLFLWGPETK 138
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLT ++E +LI+QIQDL+RLE+ K+ LQSQFGREPT+ EWA+ GL+CR L+S+LHSG
Sbjct: 139 QLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGI 198
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
SREKLI ANLR+VVHVAK YQGRG+SL DLLQEGSMGLMKSVEKF P AG RF +YA+W
Sbjct: 199 RSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFW 258
Query: 388 WVRQTIRKAIFQHSRTIRLP---ENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGIT 444
W+RQ IRKA+F+HSRTIRLP E ++ LL KV+EAK+LYIQEGN P KE+LARRVG+T
Sbjct: 259 WIRQAIRKAVFRHSRTIRLPINLEKVFILLGKVIEAKKLYIQEGNLHPTKEELARRVGVT 318
Query: 445 VEKLERLIFITRMPLSMQQPVWADQDTTFQ 474
VEK+++L+F R+P+SMQQ VWADQ+TTFQ
Sbjct: 319 VEKIDKLLFSARIPISMQQTVWADQNTTFQ 348
>gi|388501386|gb|AFK38759.1| unknown [Lotus japonicus]
Length = 311
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 155/223 (69%), Positives = 188/223 (84%)
Query: 259 LFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRD 318
+FLWGPET+KLLT +EE +LI+QIQ+L RLE+ K +LQSQFGREPT+ EWA +GLSC
Sbjct: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
Query: 319 LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 378
L+++L SG S+EKLI+ANLR+VVHVAK Y GRG+S DLLQEGSMGLMKSVEKFKPQAG
Sbjct: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
Query: 379 CRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLA 438
CRFASYAYWW+RQTIR+A+F HSRTIRLPEN+YTLL K++EAK+ Y +EGN P KE+LA
Sbjct: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELA 180
Query: 439 RRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
R++G+TV+KLE L+ R+PLSMQQ VW DQDTT+Q D A
Sbjct: 181 RKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTA 223
>gi|357113236|ref|XP_003558410.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 564
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 171/481 (35%), Positives = 260/481 (54%), Gaps = 47/481 (9%)
Query: 14 FPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYR 73
FP+ + S +SS + S +S +MH+ S +S A H+ S++ +EQ
Sbjct: 13 FPTSSPNFRSTASSPTPSRTSVPMMHD--------STGRASTACHYSPSLVAEEQVHGSV 64
Query: 74 PLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPM 133
L + + ++ + + EE + + ++DL+ Q ++ L
Sbjct: 65 SLKGEKALLELLLDMALEQHTQGKKVTGEEGAESEFESYLRDLQRQVIYQQVL------- 117
Query: 134 KRGEDPSVSLTMQSLSN-DTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEFT 192
GE+ + + S + + ++D A L KE A L E + AE
Sbjct: 118 --GEEYNSTSVSTSTLSIKSSATLDLGATSATVL--------KEVAFLPEESGTSAAEL- 166
Query: 193 DISLTS--SLGYPLEEVKQFSQ-----PRFLERRSKKRKVSKPQVTN------------H 233
D++L L + E++ Q R LERRSKKR + T+
Sbjct: 167 DVTLLHRLDLNHSYEKLLSKGQVFIRSKRLLERRSKKRDAPRASSTDALCGVVSSTDALC 226
Query: 234 ETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
+++K KK D ++P +LFL PET + LTA EE +L +++Q+L++LE+ +
Sbjct: 227 GVVDTKKKEKSKKYGRVLDPDEPFKLFLRDPETTEFLTAKEEKQLFSEVQNLMKLEEAQR 286
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
+L++Q GREP + EWAKA+G+SC+DL+S +H G REK+ +N RLV+HVA++YQG G+
Sbjct: 287 RLEAQCGREPAIEEWAKAVGMSCKDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGL 346
Query: 354 SLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTL 413
+ DL+Q+G GLMK+ EKF P GCRF +YAYWW+RQ I+K+IF+HSR IRLPE++Y L
Sbjct: 347 DIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYAL 406
Query: 414 LSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
L KV +A+ I EG P E++ARR GIT+EKL +L TR S+Q VW D TF
Sbjct: 407 LKKVGKARLECILEGEQ-PTNENVARRAGITIEKLAKLKAKTRKSRSLQDRVWPDDGVTF 465
Query: 474 Q 474
Q
Sbjct: 466 Q 466
>gi|413932354|gb|AFW66905.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 542
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 127/261 (48%), Positives = 177/261 (67%), Gaps = 1/261 (0%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTAD 273
R LERRSKKR + N + + K K D ++P RLFL ET + LTA
Sbjct: 187 RLLERRSKKRNGGHRALDNGVACSGVNSKRKDKFGRVLDPDEPFRLFLRDRETTEFLTAK 246
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
EE ++ +QIQ+L++LE + LQ+Q GREPT+ EWA+A+G+SCR+L+S + +G REK+
Sbjct: 247 EEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCREKM 306
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTI 393
+N RLV+HVA++Y+G G+ + DL+Q+G GLMK+ EKF P GCRF +YAYWW+RQ+I
Sbjct: 307 ARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSI 366
Query: 394 RKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453
+K+IF++SR IRLPE++Y LL KV +A+ I +G P E +ARR GIT+EKL +L
Sbjct: 367 KKSIFKNSRLIRLPESVYALLRKVGKARMECIMDGEQ-PTNEVVARRAGITIEKLAKLRA 425
Query: 454 ITRMPLSMQQPVWADQDTTFQ 474
TR SMQ VW+D T+Q
Sbjct: 426 KTRKVRSMQDRVWSDDGVTYQ 446
>gi|194696078|gb|ACF82123.1| unknown [Zea mays]
gi|323388703|gb|ADX60156.1| SIGMA70-like transcription factor [Zea mays]
gi|413932355|gb|AFW66906.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 127/261 (48%), Positives = 177/261 (67%), Gaps = 1/261 (0%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTAD 273
R LERRSKKR + N + + K K D ++P RLFL ET + LTA
Sbjct: 186 RLLERRSKKRNGGHRALDNGVACSGVNSKRKDKFGRVLDPDEPFRLFLRDRETTEFLTAK 245
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
EE ++ +QIQ+L++LE + LQ+Q GREPT+ EWA+A+G+SCR+L+S + +G REK+
Sbjct: 246 EEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCREKM 305
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTI 393
+N RLV+HVA++Y+G G+ + DL+Q+G GLMK+ EKF P GCRF +YAYWW+RQ+I
Sbjct: 306 ARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSI 365
Query: 394 RKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453
+K+IF++SR IRLPE++Y LL KV +A+ I +G P E +ARR GIT+EKL +L
Sbjct: 366 KKSIFKNSRLIRLPESVYALLRKVGKARMECIMDGEQ-PTNEVVARRAGITIEKLAKLRA 424
Query: 454 ITRMPLSMQQPVWADQDTTFQ 474
TR SMQ VW+D T+Q
Sbjct: 425 KTRKVRSMQDRVWSDDGVTYQ 445
>gi|162458769|ref|NP_001105507.1| sigma-like factor6 [Zea mays]
gi|4336610|gb|AAD17856.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 125/261 (47%), Positives = 174/261 (66%), Gaps = 1/261 (0%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTAD 273
R LERRSKKR + N + + K K + RLFL ET + LTA
Sbjct: 186 RLLERRSKKRNGGHRALDNGVACSGVNSKRKDKFGRVLIQTSLFRLFLRDRETTEFLTAK 245
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
EE ++ +QIQ+L++LE + LQ+Q GREPT+ EWA+A+G+SCR+L+S + +G REK+
Sbjct: 246 EEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCREKM 305
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTI 393
+N RLV+HVA++Y+G G+ + DL+Q+G GLMK+ EKF P GCRF +YAYWW+RQ+I
Sbjct: 306 ARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSI 365
Query: 394 RKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453
+K+IF++SR IRLPE++Y LL KV +A+ I +G P E +ARR GIT+EKL +L
Sbjct: 366 KKSIFKNSRLIRLPESVYALLRKVGKARMECIMDGEQ-PTNEVVARRAGITIEKLAKLRA 424
Query: 454 ITRMPLSMQQPVWADQDTTFQ 474
TR SMQ VW+D T+Q
Sbjct: 425 KTRKVRSMQDRVWSDDGVTYQ 445
>gi|115475493|ref|NP_001061343.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|30698490|dbj|BAC76602.1| Sig6 [Oryza sativa Japonica Group]
gi|40253642|dbj|BAD05586.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|40253689|dbj|BAD05631.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|113623312|dbj|BAF23257.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|215712228|dbj|BAG94355.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 572
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 126/263 (47%), Positives = 179/263 (68%), Gaps = 3/263 (1%)
Query: 214 RFLERRSKKRKVSKPQVTNHETY--NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLT 271
R LERRSK+R + + + NS+K KK + ++P +LFL ET + LT
Sbjct: 216 RLLERRSKRRYAPRASIADVSCSADNSKKKEKSKKYGRVLEPDEPFKLFLRDRETTEFLT 275
Query: 272 ADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSRE 331
A EE L ++IQ L+++E+ KL+ Q GREPTL EWA+A+G+S ++L+S + +G RE
Sbjct: 276 AKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCRE 335
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
K+ +N RLV+HVA++Y+G G+ + DL+Q+G GLMK+ EKF P GCRF +YAYWW+RQ
Sbjct: 336 KMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAYWWIRQ 395
Query: 392 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451
+I+K+IF++SR IRLPE++Y LL KV +A+ I EG P ++ARR GIT+EKL +L
Sbjct: 396 SIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMEGEQ-PTNANVARRAGITIEKLAKL 454
Query: 452 IFITRMPLSMQQPVWADQDTTFQ 474
TR P SMQ VW+D+ TFQ
Sbjct: 455 RAKTRKPRSMQDHVWSDEGVTFQ 477
>gi|218200736|gb|EEC83163.1| hypothetical protein OsI_28384 [Oryza sativa Indica Group]
Length = 537
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 126/279 (45%), Positives = 179/279 (64%), Gaps = 19/279 (6%)
Query: 214 RFLERRSKKRKVSKPQVTNHETY--NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLT 271
R LERRSK+R + + + NS+K KK + ++P +LFL ET + LT
Sbjct: 165 RLLERRSKRRYAPRASIADVSCSADNSKKKEKSKKYGRVLEPDEPFKLFLRDRETTEFLT 224
Query: 272 ADEEFELIAQIQD----------------LIRLEKEKSKLQSQFGREPTLIEWAKAIGLS 315
A EE L ++IQ L+++E+ KL+ Q GREPTL EWA+A+G+S
Sbjct: 225 AKEERHLFSKIQAKPYFYPVIFIFRTAQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMS 284
Query: 316 CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
++L+S + +G REK+ +N RLV+HVA++Y+G G+ + DL+Q+G GLMK+ EKF P
Sbjct: 285 SKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNP 344
Query: 376 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKE 435
GCRF +YAYWW+RQ+I+K+IF++SR IRLPE++Y LL KV +A+ I EG P
Sbjct: 345 SKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMEGEQ-PTNA 403
Query: 436 DLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 474
++ARR GIT+EKL +L TR P SMQ VW+D+ TFQ
Sbjct: 404 NVARRAGITIEKLAKLRAKTRKPRSMQDHVWSDEGVTFQ 442
>gi|125602683|gb|EAZ42008.1| hypothetical protein OsJ_26557 [Oryza sativa Japonica Group]
Length = 497
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 126/279 (45%), Positives = 179/279 (64%), Gaps = 19/279 (6%)
Query: 214 RFLERRSKKRKVSKPQVTNHETY--NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLT 271
R LERRSK+R + + + NS+K KK + ++P +LFL ET + LT
Sbjct: 125 RLLERRSKRRYAPRASIADVSCSADNSKKKEKSKKYGRVLEPDEPFKLFLRDRETTEFLT 184
Query: 272 ADEEFELIAQIQD----------------LIRLEKEKSKLQSQFGREPTLIEWAKAIGLS 315
A EE L ++IQ L+++E+ KL+ Q GREPTL EWA+A+G+S
Sbjct: 185 AKEERHLFSKIQAKPYFYPVIFIFRTAQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMS 244
Query: 316 CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
++L+S + +G REK+ +N RLV+HVA++Y+G G+ + DL+Q+G GLMK+ EKF P
Sbjct: 245 SKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNP 304
Query: 376 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKE 435
GCRF +YAYWW+RQ+I+K+IF++SR IRLPE++Y LL KV +A+ I EG P
Sbjct: 305 SKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMEGEQ-PTNA 363
Query: 436 DLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 474
++ARR GIT+EKL +L TR P SMQ VW+D+ TFQ
Sbjct: 364 NVARRAGITIEKLAKLRAKTRKPRSMQDHVWSDEGVTFQ 402
>gi|407327703|dbj|BAM45409.1| sigma factor 2 [Marchantia polymorpha]
Length = 615
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 159/235 (67%)
Query: 245 KKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT 304
KK +D DP+R +L KLLT+ EE EL IQDL+R+E K+ L+ Q GREPT
Sbjct: 293 KKSQPAYDPQDPVRAYLRDIGKTKLLTSSEEIELAEGIQDLLRVESVKNDLREQMGREPT 352
Query: 305 LIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSM 364
L+EWAKA+G L+S + SG + +++++N+NLRLVV +AK+YQGRG+++ DL+QEGSM
Sbjct: 353 LMEWAKAVGTERHSLESRIKSGQACKDRMVNSNLRLVVSIAKRYQGRGMTIQDLIQEGSM 412
Query: 365 GLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLY 424
GL++ EKF G +F++YA+WW+RQ I +AI SRTIRLP ++Y LLS++ +AK +
Sbjct: 413 GLIRGAEKFDHTRGFKFSTYAHWWIRQAITRAIADQSRTIRLPVHVYELLSRITKAKSML 472
Query: 425 IQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
E +P E++A VG+++EKL+ +I R P SM+ PV + DTT D
Sbjct: 473 AAEHGRAPRDEEVAELVGLSIEKLKMVIKSARSPKSMEFPVGKNNDTTLGEVIPD 527
>gi|413932356|gb|AFW66907.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 292
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 102/197 (51%), Positives = 145/197 (73%), Gaps = 1/197 (0%)
Query: 278 LIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINAN 337
+ +QIQ+L++LE + LQ+Q GREPT+ EWA+A+G+SCR+L+S + +G REK+ +N
Sbjct: 1 MFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSN 60
Query: 338 LRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAI 397
RLV+HVA++Y+G G+ + DL+Q+G GLMK+ EKF P GCRF +YAYWW+RQ+I+K+I
Sbjct: 61 FRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSI 120
Query: 398 FQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRM 457
F++SR IRLPE++Y LL KV +A+ I +G P E +ARR GIT+EKL +L TR
Sbjct: 121 FKNSRLIRLPESVYALLRKVGKARMECIMDGEQ-PTNEVVARRAGITIEKLAKLRAKTRK 179
Query: 458 PLSMQQPVWADQDTTFQ 474
SMQ VW+D T+Q
Sbjct: 180 VRSMQDRVWSDDGVTYQ 196
>gi|357510737|ref|XP_003625657.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355500672|gb|AES81875.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 365
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/162 (63%), Positives = 131/162 (80%), Gaps = 1/162 (0%)
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
+++ GN S++KLI+ANLRLVVH+AK YQG L+ EGSMGLM+SVEKFKPQAGC
Sbjct: 117 QNDFIGGNRSKDKLIHANLRLVVHIAKYYQGAWSQPXGLI-EGSMGLMRSVEKFKPQAGC 175
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLAR 439
RF++YAYWW+RQTIR+A+F HS+TIRLPEN Y LL K+ EAK+ YI+EGN P KE++A+
Sbjct: 176 RFSTYAYWWIRQTIRRALFLHSKTIRLPENFYALLGKIAEAKKSYIKEGNLHPTKEEIAK 235
Query: 440 RVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
RVGITV++LE L+F TR PLSM++ VWAD DTTFQ D++
Sbjct: 236 RVGITVDRLEMLLFSTRTPLSMERAVWADSDTTFQEITADSS 277
>gi|168012500|ref|XP_001758940.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens]
gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens]
gi|162690077|gb|EDQ76446.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
Length = 579
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 156/228 (68%)
Query: 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKA 311
D +DP+R +L KLLTA EE +L QIQDL++LE KS L+ + GR T+ EW++A
Sbjct: 259 DPSDPVRAYLRDIGRTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWSRA 318
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
+G+ ++ L G +++K++N+NLRLVV +AK YQGRG++L DL+QEGSMGL++ E
Sbjct: 319 VGMEQNAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQEGSMGLVRGAE 378
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHS 431
KF P G +F++YA+WW+RQ + ++I SRTIRLP ++Y ++S++ +AKR+ +QE
Sbjct: 379 KFDPTKGFKFSTYAHWWIRQAVTRSIADQSRTIRLPIHLYEVISRINKAKRMLVQEHGRE 438
Query: 432 PDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
E++A VG+TVEKL+ ++ + P SM++P+ D DTT D
Sbjct: 439 ARNEEVAELVGLTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGELVAD 486
>gi|148907004|gb|ABR16646.1| unknown [Picea sitchensis]
Length = 592
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 110/246 (44%), Positives = 156/246 (63%), Gaps = 5/246 (2%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFL-WGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
T +SRK KK +S +D +RL W + +LLTA EE EL IQDLI+L++ ++
Sbjct: 263 TRSSRKG--KKAISSKGHISDSIRLLRDWS--SSRLLTASEEVELSRGIQDLIKLDRIRA 318
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
K + + G+EPTL +WA+ IG+ + LK L G S +K+IN NLRLV+ VAK YQ RG+
Sbjct: 319 KYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGRDSFDKIINCNLRLVISVAKNYQNRGL 378
Query: 354 SLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTL 413
SL DL+Q GSMGLM+S EKF G +F++YAYWW+RQ+I KA+ + SRTIRLP +I
Sbjct: 379 SLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYWWIRQSITKALTEQSRTIRLPVHIVES 438
Query: 414 LSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
++++ A RL QE P KE++A GI++ +L + +R+P S+ + V D D F
Sbjct: 439 MTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKF 498
Query: 474 QSTFLD 479
D
Sbjct: 499 SEIVAD 504
>gi|168009782|ref|XP_001757584.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691278|gb|EDQ77641.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 583
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 99/226 (43%), Positives = 151/226 (66%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R +L + KLL+A EE L +IQD+++LEK +++LQ GREPTL EW++A+
Sbjct: 268 SDPIRSYLRDIKRTKLLSASEEVALSRKIQDILKLEKIRAELQRDIGREPTLSEWSQAVS 327
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L L+ + G S+++KL+N+NLRLVV + K YQGRG++L DL+QEGS+GL++ EKF
Sbjct: 328 LDQTSLELRVKEGRSAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSLGLIRGAEKF 387
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P+ G +F++YA WW+RQ + +AI SR IRLP +IY ++S++ +AK QE P
Sbjct: 388 DPEMGYKFSTYATWWIRQAVTRAIADQSRIIRLPVHIYEVISRINKAKMTISQELGRQPR 447
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
E++A VG++VEKL ++ R P SM +P+ D + + D
Sbjct: 448 DEEVAAMVGMSVEKLLFIVKSARPPTSMDRPIGKDGEQSLGEMVAD 493
>gi|148909485|gb|ABR17840.1| unknown [Picea sitchensis]
Length = 495
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/246 (44%), Positives = 155/246 (63%), Gaps = 5/246 (2%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFL-WGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
T +SRK KK +S +D +RL W +LLTA EE EL IQDLI+L++ ++
Sbjct: 166 TRSSRKG--KKAISSKGHISDSIRLLRDWSSS--RLLTASEEVELSRGIQDLIKLDRIRA 221
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
K + + G+EPTL +WA+ IG+ + LK L G S +K+IN NLRLV+ VAK YQ RG+
Sbjct: 222 KYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGRDSFDKIINCNLRLVISVAKNYQNRGL 281
Query: 354 SLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTL 413
SL DL+Q GSMGLM+S EKF G +F++YAYWW+RQ+I KA+ + SRTIRLP +I
Sbjct: 282 SLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYWWIRQSITKALTEQSRTIRLPVHIVES 341
Query: 414 LSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
++++ A RL QE P KE++A GI++ +L + +R+P S+ + V D D F
Sbjct: 342 MTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKF 401
Query: 474 QSTFLD 479
D
Sbjct: 402 SEIVAD 407
>gi|168009564|ref|XP_001757475.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691169|gb|EDQ77532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 591
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 98/228 (42%), Positives = 151/228 (66%), Gaps = 2/228 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ--DLIRLEKEKSKLQSQFGREPTLIEWAKA 311
DP+R +L KLLTA EE L +IQ DL+ LEK KS LQ + GREP++ EW++A
Sbjct: 273 TDPVRAYLRDIGKTKLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSIGEWSRA 332
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
+G+ + + G S++K++N+NLRLVV + K YQGRG++L DL+QEGSMGL++ E
Sbjct: 333 VGMEQNAFELRVKEGRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSMGLIRGAE 392
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHS 431
KF P G +F++YA+WW+RQ + +AI SR IRLP ++Y ++S++ +AK++ IQE
Sbjct: 393 KFDPDKGFKFSTYAHWWIRQAVTRAIADQSRIIRLPIHLYEVISRINKAKKMLIQEHGRQ 452
Query: 432 PDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
P E++A VG++VEKL+ ++ + P SM + + ++D + D
Sbjct: 453 PRDEEVAELVGMSVEKLKFIVKSAKTPSSMDRLIGKEKDQSIGEMIAD 500
>gi|449454538|ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
gi|449473951|ref|XP_004154029.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
Length = 580
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 164/258 (63%), Gaps = 1/258 (0%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLS-EGFDRNDPLRLFLWGPETRKLLTA 272
R ER++++ + ++ VT+ ++ S +S KK+ S + D +DPLR T +LLTA
Sbjct: 226 RQTERKARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTA 285
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE EL IQDL++LE+ + +L ++G EPT +WA A G++ R L+ L+ G ++K
Sbjct: 286 TEELELSEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDK 345
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
+I +N+RLV+ +AK YQG G++L DL+QEG GL++ EKF G +F++YA+WW++Q
Sbjct: 346 MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 405
Query: 393 IRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLI 452
+RK + SRTIRLP ++ +V EA++ + E PD +++A G+++++L ++
Sbjct: 406 VRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVL 465
Query: 453 FITRMPLSMQQPVWADQD 470
+ P S++Q + +Q+
Sbjct: 466 MTPKAPRSLEQKIGINQN 483
>gi|428778228|ref|YP_007170015.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428692507|gb|AFZ45801.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 394
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 165/259 (63%), Gaps = 6/259 (2%)
Query: 224 KVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQ 283
+ S VT + NS++ S KK +E D +RL+L +LL ADEE EL +I
Sbjct: 57 ETSTKAVTATKEENSKEDSKKKSYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIA 111
Query: 284 DLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVH 343
DL+ LE+++++L++ G EPT EWA+ + + + + L G ++EK++ +NLRLVV
Sbjct: 112 DLLELERKRTELEATIGCEPTDEEWAEEVDMPLQKFRRRLMLGRRAKEKMVQSNLRLVVS 171
Query: 344 VAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRT 403
+AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRT
Sbjct: 172 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 231
Query: 404 IRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQ 463
IRLP ++Y +S++ + +L QE P +E++A R+ +T+EKL + ++P+S++
Sbjct: 232 IRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLET 291
Query: 464 PVWADQDTTFQSTFLDAAG 482
P+ ++D+ F++A G
Sbjct: 292 PIGKEEDSRL-GDFIEADG 309
>gi|440682269|ref|YP_007157064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679388|gb|AFZ58154.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 392
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 149/228 (65%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + +LQ Q REP EWA+A+ L
Sbjct: 82 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQDQLEREPQFKEWAEAVEL 141
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 142 PLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 201
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +
Sbjct: 202 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 261
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 262 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 308
>gi|354567212|ref|ZP_08986382.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353543513|gb|EHC12971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 393
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 149/228 (65%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + +LQ Q REP EWA+A+ L
Sbjct: 83 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQQQLEREPQYSEWAEAVQL 142
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 143 PLPQFRHRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 202
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +
Sbjct: 203 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 262
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 263 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 309
>gi|334118497|ref|ZP_08492586.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459504|gb|EGK88117.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 388
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 155/244 (63%), Gaps = 5/244 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + +L +
Sbjct: 66 RRAQAKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVREQLLEE 121
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
+ REP EWA A+ ++ + LH G ++EK++ +NLRLVV +AK+Y RG+S DL
Sbjct: 122 YNREPKDSEWANAVDMALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDL 181
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++
Sbjct: 182 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 241
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ +L QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+
Sbjct: 242 KTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFI 300
Query: 479 DAAG 482
++ G
Sbjct: 301 ESDG 304
>gi|298491609|ref|YP_003721786.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298233527|gb|ADI64663.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 390
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 167/277 (60%), Gaps = 14/277 (5%)
Query: 206 EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPE 265
E+ F +P+ E +K K +K + R S KK +E D +RL+L
Sbjct: 44 EIDDFLEPQSDEDDAKSGKAAKSR--------RRTQSKKKHYTE-----DSIRLYLQEIG 90
Query: 266 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
+LL ADEE EL +I DL+ LE+ + +L Q REP EWA+A+ L + LH
Sbjct: 91 RIRLLRADEEIELARKIADLLELERVRDRLYEQLEREPQFKEWAEAVQLPLPTFRYRLHV 150
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 151 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 210
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +E++A R+ +T+
Sbjct: 211 TWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTI 270
Query: 446 EKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 271 EKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 306
>gi|427718031|ref|YP_007066025.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350467|gb|AFY33191.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 390
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 168/277 (60%), Gaps = 14/277 (5%)
Query: 206 EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPE 265
E+ +F +P+ E +K K +K + R S KK +E D +RL+L
Sbjct: 44 EIDEFLEPQSDEDDAKSGKAAKSR--------RRTQSKKKHYTE-----DSIRLYLQEIG 90
Query: 266 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
+LL ADEE EL +I DL+ LE+ + KL Q R+P EWA+A+ L + LH
Sbjct: 91 RIRLLRADEEIELARKIADLLELERVREKLSEQLDRDPKDSEWAEAVQLPLPAFRYRLHV 150
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 151 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 210
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +E++A R+ +T+
Sbjct: 211 TWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTI 270
Query: 446 EKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 271 EKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 306
>gi|119512308|ref|ZP_01631394.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119463021|gb|EAW43972.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 391
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 155/244 (63%), Gaps = 6/244 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R S KK +E D +RL+L +LL ADEE EL +I DL+ LE+ + +LQ Q
Sbjct: 70 RTQSKKKHYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQEQ 124
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
REP EWA+A+ + + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 125 LEREPEYREWAEAVQIPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 184
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++
Sbjct: 185 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 244
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ +L QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+
Sbjct: 245 KTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFI 303
Query: 479 DAAG 482
++ G
Sbjct: 304 ESDG 307
>gi|356509511|ref|XP_003523491.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 558
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 159/258 (61%), Gaps = 1/258 (0%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLS-EGFDRNDPLRLFLWGPETRKLLTA 272
R ER++K+ + ++ TN ++ +S +K++S + D +DPLR +LLT
Sbjct: 204 RQTERKAKRVRATEKATTNFTSFKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTP 263
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE +L A IQDL++LEK + L +FG +PT +WA G+ + L+ L+ G ++K
Sbjct: 264 TEEIKLSAGIQDLLKLEKIQEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDK 323
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
+I +N+RLV+ +AK YQG G++L DL+QEG GL+K EKF G +F++YA+WW++Q
Sbjct: 324 MIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQA 383
Query: 393 IRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLI 452
+RK++ SRTIRLP ++ +V EA++ E PD E++A G+++++L ++
Sbjct: 384 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLNAVL 443
Query: 453 FITRMPLSMQQPVWADQD 470
+ P S++Q + +Q+
Sbjct: 444 MTPKAPRSLEQKIGINQN 461
>gi|428225120|ref|YP_007109217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985021|gb|AFY66165.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 381
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 155/244 (63%), Gaps = 5/244 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
RKA KKK D +RL+L +LL ADEE EL +I DL+ LE+ ++ L Q
Sbjct: 59 RKAQAKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRADLAEQ 114
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
REPT EWA+ + ++ + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 115 LEREPTDAEWAQKVDMALPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 174
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++
Sbjct: 175 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 234
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ +L QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+
Sbjct: 235 KTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFI 293
Query: 479 DAAG 482
++ G
Sbjct: 294 ESDG 297
>gi|428320499|ref|YP_007118381.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244179|gb|AFZ09965.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 388
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 155/244 (63%), Gaps = 5/244 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + +L +
Sbjct: 66 RRAQAKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVREQLLEE 121
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
+ REP EWA A+ ++ + LH G ++EK++ +NLRLVV +AK+Y RG+S DL
Sbjct: 122 YNREPKDSEWANAVEMALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDL 181
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++
Sbjct: 182 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 241
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ +L QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+
Sbjct: 242 KTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFI 300
Query: 479 DAAG 482
++ G
Sbjct: 301 ESDG 304
>gi|428214219|ref|YP_007087363.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428002600|gb|AFY83443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 387
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 155/255 (60%), Gaps = 6/255 (2%)
Query: 228 PQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIR 287
P+ T + R KK +E D +RL+L +LL ADEE EL +I DL+
Sbjct: 55 PKATKARSTRRRAQPKKKHYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIADLLE 109
Query: 288 LEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQ 347
LE+ + L REP EWA A+ +S + LH G +++K++ +NLRLVV +AK+
Sbjct: 110 LERIREHLCDHLHREPYDAEWADAVKMSVGQFRHRLHCGRRAKDKMVQSNLRLVVSIAKK 169
Query: 348 YQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP
Sbjct: 170 YMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLP 229
Query: 408 ENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWA 467
++Y +S++ + +L QE P +E++A R+ +T+EKL + ++P+S++ P+
Sbjct: 230 VHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGK 289
Query: 468 DQDTTFQSTFLDAAG 482
++D+ F+++ G
Sbjct: 290 EEDSRL-GDFIESDG 303
>gi|434393235|ref|YP_007128182.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428265076|gb|AFZ31022.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 390
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 155/244 (63%), Gaps = 5/244 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I +L+ +E+ + +L Q
Sbjct: 68 RRAQTKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLEMERVRERLLEQ 123
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
REP EWA+A+ LS + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 124 LDREPQDSEWAEAVQLSLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 183
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++
Sbjct: 184 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 243
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ +L QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+
Sbjct: 244 KTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFI 302
Query: 479 DAAG 482
++ G
Sbjct: 303 ESDG 306
>gi|427705875|ref|YP_007048252.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358380|gb|AFY41102.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 391
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/277 (36%), Positives = 168/277 (60%), Gaps = 14/277 (5%)
Query: 206 EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPE 265
E+ +F +P+ E +K K +K + R S KK +E D +RL+L
Sbjct: 45 EMDEFLEPQSDEDDAKSGKAAKSR--------RRTQSKKKHYTE-----DSIRLYLQEIG 91
Query: 266 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
+LL ADEE EL +I DL+ LE+ + +L Q R+P EWA+A+ L + LH
Sbjct: 92 RIRLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHV 151
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 152 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 211
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +E++A R+ +T+
Sbjct: 212 TWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTI 271
Query: 446 EKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 272 EKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 307
>gi|282896628|ref|ZP_06304643.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281198498|gb|EFA73384.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 390
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 147/228 (64%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + L Q REP EWA+A+ L
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEAVKL 139
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 140 PLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 199
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +
Sbjct: 200 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 259
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 260 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 306
>gi|282899714|ref|ZP_06307678.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195593|gb|EFA70526.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 390
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 147/228 (64%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + L Q REP EWA+A+ L
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEAVKL 139
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 140 PLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 199
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +
Sbjct: 200 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 259
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 260 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 306
>gi|332707223|ref|ZP_08427276.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332353957|gb|EGJ33444.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332651116|gb|AEE81159.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 152/246 (61%), Gaps = 5/246 (2%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
N R+ KKK D +RL+L +LL ADEE EL +I DL+ LE+ + +L
Sbjct: 49 NRRRTQSKKKHYT----EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLS 104
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
Q REP EWA + + + LH G ++EK++ +NLRLVV +AK+Y RG+S
Sbjct: 105 EQLEREPGDREWATEVDMELPAFRYRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQ 164
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSK 416
DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S+
Sbjct: 165 DLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISR 224
Query: 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQST 476
+ + +L QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+
Sbjct: 225 IKKTTKLLSQEMGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GD 283
Query: 477 FLDAAG 482
F++A G
Sbjct: 284 FIEADG 289
>gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
Length = 569
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/259 (37%), Positives = 161/259 (62%), Gaps = 3/259 (1%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLS-EGFDRNDPLRLFLWGPETRKLLTA 272
R ER++++ + + ++ + S KK+ S + D +DPLR T +LLTA
Sbjct: 215 RQTERKARRARAVEKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTA 274
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE EL A IQDL++LE+ + +L ++G +PT +WA A G+ R L+ ++ G ++K
Sbjct: 275 SEELELSAAIQDLLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDK 334
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
+I +N+RLV+ +AK YQG G++L DL+QEG GL++ EKF G +F++YA+WW++Q
Sbjct: 335 MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 394
Query: 393 IRKAIFQHSRTIRLPENIYTLLSKVLEA-KRLYIQEGNHSPDKEDLARRVGITVEKLERL 451
+RK++ SRTIRLP ++ +V EA K+LY + G H PD E++A G+++++L +
Sbjct: 395 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH-PDDEEVAEAAGLSMKRLSAV 453
Query: 452 IFITRMPLSMQQPVWADQD 470
+ + P S+ Q + + D
Sbjct: 454 LLTPKAPRSLDQKIGMNMD 472
>gi|411117176|ref|ZP_11389663.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713279|gb|EKQ70780.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 382
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 147/228 (64%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + LQ Q R P EWA A+ +
Sbjct: 72 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRESLQQQLDRTPQDAEWANAVNM 131
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ + LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 132 TLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 191
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +
Sbjct: 192 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 251
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 252 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 298
>gi|428299682|ref|YP_007137988.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428236226|gb|AFZ02016.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 389
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 154/244 (63%), Gaps = 5/244 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + KL Q
Sbjct: 67 RRAQAKKKHYT----EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSQQ 122
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
R+P EWA+A+ + + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 123 LDRDPKDSEWAEAVQVPLPQFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 182
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++
Sbjct: 183 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 242
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ +L QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+
Sbjct: 243 KTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFI 301
Query: 479 DAAG 482
++ G
Sbjct: 302 ESDG 305
>gi|428206989|ref|YP_007091342.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008910|gb|AFY87473.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 392
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 154/244 (63%), Gaps = 5/244 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + KL +
Sbjct: 70 RRAQTKKKQYT----EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSDR 125
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
REP EWA+A+ + + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 126 LDREPQDSEWAEAVKQNLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 185
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++
Sbjct: 186 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 245
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ +L QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+
Sbjct: 246 KTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFI 304
Query: 479 DAAG 482
++ G
Sbjct: 305 ESDG 308
>gi|186686393|ref|YP_001869589.1| RNA polymerase sigma factor RpoD [Nostoc punctiforme PCC 73102]
gi|8118663|gb|AAF73062.1|AF265349_1 primary vegetative sigma factor [Nostoc punctiforme]
gi|186468845|gb|ACC84646.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 389
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 154/244 (63%), Gaps = 6/244 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R S KK +E D +RL+L +LL ADEE EL +I DL+ LE+ + +L Q
Sbjct: 68 RTQSKKKHYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEQ 122
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
R+P EWA+A+ L + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 123 LDRDPRDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 182
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++
Sbjct: 183 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 242
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ +L QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+
Sbjct: 243 KTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFI 301
Query: 479 DAAG 482
++ G
Sbjct: 302 ESDG 305
>gi|427729924|ref|YP_007076161.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365843|gb|AFY48564.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 390
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 168/277 (60%), Gaps = 14/277 (5%)
Query: 206 EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPE 265
++ +F +P+ E +K K +K + R S KK +E D +RL+L
Sbjct: 44 DIDEFLEPQSDEDDAKSGKAAKSR--------RRTQSKKKHYTE-----DSIRLYLQEIG 90
Query: 266 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
+LL ADEE EL +I DL+ LE+ + +L Q R+P EWA+A+ L + LH
Sbjct: 91 RIRLLRADEEIELARKIADLLELERIRERLSEQLERDPHDSEWAEAVQLPLPAFRYRLHL 150
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 151 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 210
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +E++A R+ +T+
Sbjct: 211 TWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTI 270
Query: 446 EKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 271 EKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 306
>gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
gi|297335543|gb|EFH65960.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
Length = 572
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 150/235 (63%), Gaps = 5/235 (2%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
N RK K+ +++ D NDPLR + KLLT EE EL A IQDL++LE+ +++L
Sbjct: 243 NPRK---KRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELT 299
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ GR+PT +WA A G+ + L+ +H G ++K+I +N+RLV+ +AK YQG G++L
Sbjct: 300 ERCGRQPTFAQWASAAGVDQKSLRKRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQ 359
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSK 416
DL+QEG GL++ EKF G +F++YA+WW++Q +RK++ SR IRLP ++ +
Sbjct: 360 DLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYR 419
Query: 417 VLEA-KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
V EA K+LY + G H P E++A G+++++L ++ + P S+ Q + +Q+
Sbjct: 420 VKEARKQLYSETGKH-PKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQN 473
>gi|300867798|ref|ZP_07112441.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
gi|300334215|emb|CBN57613.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
Length = 391
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 154/244 (63%), Gaps = 5/244 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + +L +
Sbjct: 69 RRAQAKKKHYT----EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREQLCEE 124
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
R+P EWA A+G+ + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 125 LERDPKDNEWANAVGMPLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 184
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++
Sbjct: 185 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 244
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ +L QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+
Sbjct: 245 KTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFI 303
Query: 479 DAAG 482
++ G
Sbjct: 304 ESDG 307
>gi|427734591|ref|YP_007054135.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369632|gb|AFY53588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 389
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 148/228 (64%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ +L Q R+P EWA+A+ L
Sbjct: 79 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVGDRLVQQLERQPQESEWAEAVQL 138
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ + LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 139 PLQKFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 198
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +
Sbjct: 199 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 258
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 259 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 305
>gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 146/229 (63%), Gaps = 3/229 (1%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
NSRK K+ + D +DPLR + +LLT+ EE EL A IQDL++LEK +L+
Sbjct: 248 NSRK---KRTSVQEVDYSDPLRYLRGATNSSRLLTSSEETELSAGIQDLLKLEKLHDELK 304
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+FG+ P+ ++WA A G+ R L+ L+ G ++K+I +N+RLV+ +AK YQG G++L
Sbjct: 305 VRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVISIAKNYQGSGMNLQ 364
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSK 416
DL+QEG GL++ EKF G +F++YA+WW++Q +RK++ SRTIRLP ++ +
Sbjct: 365 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 424
Query: 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPV 465
V EA++ + E P+ E++A G+++++L ++ + P S+ Q +
Sbjct: 425 VKEARKQLLSENGKQPNNEEVAEATGLSMKRLTAVLMTPKAPRSLDQKI 473
>gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA polymerase sigma factor sigB; Short=Sigma factor
B; Short=Sigma-B; AltName: Full=Protein ABERRANT
CHLOROPLAST 1; AltName: Full=RNA polymerase sigma factor
sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
Full=RNA polymerase sigma factor sig2; Short=Atsig2;
Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
factor sigA; Short=Sigma factor A; Short=Sigma-A; Flags:
Precursor
gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22 [Arabidopsis thaliana]
gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis thaliana]
gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis thaliana]
gi|2597831|emb|CAA75584.1| sigma factor [Arabidopsis thaliana]
gi|2879922|dbj|BAA24825.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis thaliana]
gi|133778838|gb|ABO38759.1| At1g08540 [Arabidopsis thaliana]
gi|332190182|gb|AEE28303.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
Length = 572
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 161/259 (62%), Gaps = 3/259 (1%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKL-SEGFDRNDPLRLFLWGPETRKLLTA 272
R ER++++ K + + + + + KK+L ++ D NDPLR + KLLT
Sbjct: 216 RQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTV 275
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE EL A IQDL++LE+ +++L + GR+PT +WA A G+ + L+ +H G ++K
Sbjct: 276 REEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDK 335
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
+I +N+RLV+ +AK YQG G++L DL+QEG GL++ EKF G +F++YA+WW++Q
Sbjct: 336 MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQA 395
Query: 393 IRKAIFQHSRTIRLPENIYTLLSKVLEA-KRLYIQEGNHSPDKEDLARRVGITVEKLERL 451
+RK++ SR IRLP ++ +V EA K+LY + G H P E++A G+++++L +
Sbjct: 396 VRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKH-PKNEEIAEATGLSMKRLMAV 454
Query: 452 IFITRMPLSMQQPVWADQD 470
+ + P S+ Q + +Q+
Sbjct: 455 LLSPKPPRSLDQKIGMNQN 473
>gi|158334991|ref|YP_001516163.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|359457419|ref|ZP_09245982.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
gi|158305232|gb|ABW26849.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 371
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 96/254 (37%), Positives = 155/254 (61%), Gaps = 6/254 (2%)
Query: 229 QVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRL 288
+ T T R S KK +E D +RL+L +LL ADEE EL +I DL+ L
Sbjct: 40 KTTKARTARRRGQSKKKHYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIADLLEL 94
Query: 289 EKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQY 348
E+ L + REP L EWA + + + LH+G +++K++ +NLRLVV +AK+Y
Sbjct: 95 ERIYDDLFDRLEREPQLQEWALEVDMPLNRFRHRLHAGRRAKDKMVQSNLRLVVSIAKKY 154
Query: 349 QGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPE 408
RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP
Sbjct: 155 MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 214
Query: 409 NIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWAD 468
++Y +S++ + +L QE P +E++A R+ +T+EKL + ++P+S++ P+ +
Sbjct: 215 HLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKE 274
Query: 469 QDTTFQSTFLDAAG 482
+D+ F+++ G
Sbjct: 275 EDSRL-GDFIESDG 287
>gi|428312164|ref|YP_007123141.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428253776|gb|AFZ19735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 373
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 153/244 (62%), Gaps = 5/244 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + +L Q
Sbjct: 51 RRAQAKKKHYT----EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLSDQ 106
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
REP EWA + + + + L+ G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 107 LEREPQDSEWATEVNMPLQAFRHRLYVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 166
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++
Sbjct: 167 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 226
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ ++ QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+
Sbjct: 227 KTTKILSQEMGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFI 285
Query: 479 DAAG 482
+A G
Sbjct: 286 EADG 289
>gi|17232755|ref|NP_489303.1| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120]
gi|75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD [Anabaena variabilis ATCC 29413]
gi|133465|sp|P26683.1|RPOD_NOSS1 RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|142108|gb|AAA22043.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134402|dbj|BAB76962.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|75701357|gb|ABA21033.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 390
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 168/277 (60%), Gaps = 14/277 (5%)
Query: 206 EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPE 265
++ +F +P+ E +K K +K + R S KK +E D +RL+L
Sbjct: 44 DIDEFLEPQTDEDDAKSGKAAKSR--------RRTQSKKKHYTE-----DSIRLYLQEIG 90
Query: 266 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
+LL ADEE EL +I DL+ LE+ + +L + R+P EWA+A+ L + LH
Sbjct: 91 RIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHI 150
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 151 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 210
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +E++A R+ +T+
Sbjct: 211 TWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTI 270
Query: 446 EKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 271 EKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 306
>gi|427724795|ref|YP_007072072.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356515|gb|AFY39238.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 379
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 149/228 (65%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L +LL A+EE EL +I DL+ LE+ + +L+ R PT EWA+A G+
Sbjct: 69 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLEEHESRVPTDKEWAEAAGM 128
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+D + L G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 129 PLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 188
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE P +
Sbjct: 189 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTE 248
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F++A G
Sbjct: 249 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEADG 295
>gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
thaliana]
Length = 572
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 161/259 (62%), Gaps = 3/259 (1%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKL-SEGFDRNDPLRLFLWGPETRKLLTA 272
R ER++++ K + + + + + KK+L ++ D NDPLR + KLLT
Sbjct: 216 RQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTV 275
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE EL A IQDL++LE+ +++L + GR+PT +WA A G+ + L+ +H G ++K
Sbjct: 276 REEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDK 335
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
+I +N+RLV+ +AK YQG G++L DL+QEG GL++ EKF G +F++YA+WW++Q
Sbjct: 336 MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQA 395
Query: 393 IRKAIFQHSRTIRLPENIYTLLSKVLEA-KRLYIQEGNHSPDKEDLARRVGITVEKLERL 451
+RK++ SR IRLP ++ +V EA K+LY + G H P E++A G+++++L +
Sbjct: 396 VRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKH-PKNEEIAEATGLSMKRLMAV 454
Query: 452 IFITRMPLSMQQPVWADQD 470
+ + P S+ Q + +Q+
Sbjct: 455 LLSPKPPRSLDQKIGMNQN 473
>gi|1588486|prf||2208419B RNA polymerase sigma factor
Length = 391
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 156/252 (61%), Gaps = 5/252 (1%)
Query: 235 TYNSRKASVKKKLSEGFDRN----DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK 290
T SRKA ++ + D +R++L +LL A+EE EL +I DL+ LE+
Sbjct: 57 TKKSRKAKTSRRKETATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELER 116
Query: 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG 350
+ +L R PT EWA+A G+ +D + L G +++K++ +NLRLVV +AK+Y
Sbjct: 117 MREQLTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMN 176
Query: 351 RGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENI 410
RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++
Sbjct: 177 RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHL 236
Query: 411 YTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
Y +S++ + ++ QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D
Sbjct: 237 YETISRIKKTTKILSQELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEED 296
Query: 471 TTFQSTFLDAAG 482
+ F++A G
Sbjct: 297 SRL-GDFIEADG 307
>gi|170078618|ref|YP_001735256.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002]
gi|169886287|gb|ACB00001.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
Length = 375
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 156/252 (61%), Gaps = 5/252 (1%)
Query: 235 TYNSRKASVKKKLSEGFDRN----DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK 290
T SRKA ++ + D +R++L +LL A+EE EL +I DL+ LE+
Sbjct: 41 TKKSRKAKTSRRKETATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELER 100
Query: 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG 350
+ +L R PT EWA+A G+ +D + L G +++K++ +NLRLVV +AK+Y
Sbjct: 101 MREQLTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMN 160
Query: 351 RGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENI 410
RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++
Sbjct: 161 RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHL 220
Query: 411 YTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
Y +S++ + ++ QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D
Sbjct: 221 YETISRIKKTTKILSQELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEED 280
Query: 471 TTFQSTFLDAAG 482
+ F++A G
Sbjct: 281 SRL-GDFIEADG 291
>gi|434405382|ref|YP_007148267.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428259637|gb|AFZ25587.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 390
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 166/277 (59%), Gaps = 14/277 (5%)
Query: 206 EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPE 265
E+ +F +P+ E +K K +K + R S KK +E D +RL+L
Sbjct: 44 EIDEFLEPQSDEDDAKSGKAAKSR--------RRTQSKKKHYTE-----DSIRLYLQEIG 90
Query: 266 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
+LL ADEE EL +I DL+ LE+ + +L + R+P EWA + L + LH
Sbjct: 91 RIRLLRADEEIELARKIADLLELERVRERLSERLERDPKDSEWAAEVQLPLPAFRYRLHV 150
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 151 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 210
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +E++A R+ +T+
Sbjct: 211 TWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTI 270
Query: 446 EKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 271 EKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 306
>gi|428307311|ref|YP_007144136.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248846|gb|AFZ14626.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 383
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 155/244 (63%), Gaps = 5/244 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I +L++LE+ +L++Q
Sbjct: 61 RRAQTKKKHYT----EDSIRLYLQEIGRIRLLRADEEIELARKIAELLQLERVYEQLKAQ 116
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
REP EWA A+ + + L+ G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 117 LDREPKDSEWALAVEMPLPQFRHRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 176
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++
Sbjct: 177 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 236
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ +L QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+
Sbjct: 237 KTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFI 295
Query: 479 DAAG 482
+A G
Sbjct: 296 EADG 299
>gi|218245044|ref|YP_002370415.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257058068|ref|YP_003135956.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218165522|gb|ACK64259.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256588234|gb|ACU99120.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 379
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 150/228 (65%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L +LL A+EE EL +I DL+ LE+ + K+ GR PT +EW++AI +
Sbjct: 69 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIREKMTEHMGRFPTDLEWSQAINM 128
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ L+ G +++K++++NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 129 EWHAFQRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 188
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE P +
Sbjct: 189 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTE 248
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F++A G
Sbjct: 249 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEADG 295
>gi|254416030|ref|ZP_05029786.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177205|gb|EDX72213.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 380
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 146/228 (64%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + +L Q REP EWAK + +
Sbjct: 70 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLYDQLEREPKEGEWAKEVEM 129
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 130 ELPAFRQRLFLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 189
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE P +
Sbjct: 190 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTE 249
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F++A G
Sbjct: 250 EEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEADG 296
>gi|443309377|ref|ZP_21039100.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780574|gb|ELR90744.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 386
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 155/244 (63%), Gaps = 5/244 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I +L+++E+ + +L +
Sbjct: 64 RRAQTKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLQMERVREQLCDR 119
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
R+P EWA+A+ L + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 120 LDRDPHDSEWAEAVELPINSFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 179
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++
Sbjct: 180 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 239
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ +L QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+
Sbjct: 240 KTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFI 298
Query: 479 DAAG 482
++ G
Sbjct: 299 ESDG 302
>gi|220906934|ref|YP_002482245.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863545|gb|ACL43884.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 378
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 147/228 (64%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + +L + REP EWA + +
Sbjct: 68 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREQLYDKLDREPQDQEWAGEVDM 127
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ + LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 128 PLQSFRHRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 187
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +
Sbjct: 188 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 247
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 248 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 294
>gi|307152414|ref|YP_003887798.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982642|gb|ADN14523.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 377
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 155/244 (63%), Gaps = 6/244 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R A KK +E D +R++L +LL A+EE EL +I DL+ LE+ + KL+
Sbjct: 56 RDAGKKKPYTE-----DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRN 110
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
GR P+ EWA+ +G+ + L+ G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 111 LGRYPSDKEWAQQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 170
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++
Sbjct: 171 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 230
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ ++ QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+
Sbjct: 231 KTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFI 289
Query: 479 DAAG 482
+A G
Sbjct: 290 EADG 293
>gi|218438948|ref|YP_002377277.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218171676|gb|ACK70409.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 376
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 155/244 (63%), Gaps = 6/244 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R A KK +E D +R++L +LL A+EE EL +I DL+ LE+ + KL+
Sbjct: 55 RDAGKKKPYTE-----DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRS 109
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
GR P+ EWA+ +G+ + L+ G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 110 LGRYPSDKEWAEQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 169
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++
Sbjct: 170 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 229
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ ++ QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+
Sbjct: 230 KTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFI 288
Query: 479 DAAG 482
+A G
Sbjct: 289 EADG 292
>gi|113478384|ref|YP_724445.1| RNA polymerase sigma factor RpoD [Trichodesmium erythraeum IMS101]
gi|110169432|gb|ABG53972.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 386
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 6/245 (2%)
Query: 238 SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297
+R A KK +E D +RL+L +LL ADEE EL +I DL+ LE+ + +L
Sbjct: 64 TRTAGKKKHYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREELIY 118
Query: 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
REP + EWA A+ + K L G ++EK++ +NLRLVV +AK+Y RG+S D
Sbjct: 119 HLDREPQVSEWANAVDMELPKFKRRLILGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQD 178
Query: 358 LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKV 417
L+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++
Sbjct: 179 LIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRI 238
Query: 418 LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTF 477
+ +L QE P +E++A + +T+EKL + ++P+S++ P+ ++D+ F
Sbjct: 239 KKTTKLLSQEMGRKPTEEEIATSMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDF 297
Query: 478 LDAAG 482
+++ G
Sbjct: 298 IESDG 302
>gi|254424926|ref|ZP_05038644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196192415|gb|EDX87379.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 404
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 147/228 (64%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL A+EE EL +I DL+ LE+ + ++ Q EPT +WA A+ +
Sbjct: 94 DSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERIRDEIDDQLDDEPTDADWANAVDM 153
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ L+ G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 154 PLPAFRRRLYQGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 213
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +
Sbjct: 214 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTE 273
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 274 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 320
>gi|428779237|ref|YP_007171023.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428693516|gb|AFZ49666.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 388
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 158/249 (63%), Gaps = 6/249 (2%)
Query: 234 ETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
E +++ S KK +E D +RL+L +LL ADEE EL +I DL LE+ ++
Sbjct: 61 EATTTKEDSKKKSYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIADLSELERTRT 115
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
+L++ G EPT EWA+ +G + + L G ++EK++ +NLRLVV +AK+Y RG+
Sbjct: 116 ELEATIGCEPTDEEWAEEVGQALPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGL 175
Query: 354 SLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTL 413
S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y
Sbjct: 176 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 235
Query: 414 LSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+S++ + ++ QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+
Sbjct: 236 ISRIKKTTKILSQELARKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 295
Query: 474 QSTFLDAAG 482
F++A G
Sbjct: 296 -GDFIEADG 303
>gi|330040254|ref|XP_003239821.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
gi|327206746|gb|AEA38923.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
Length = 414
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 179/301 (59%), Gaps = 14/301 (4%)
Query: 183 NPKLNGAEFTDISLTSSLGYPLE--EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRK 240
N K N EF I+ Y ++ EVK+ + F +R K K+ +P+V + S
Sbjct: 21 NFKKNWLEFNLINNVEKNFYEVKKNEVKKIIKS-FNTQREFKNKIEEPEVAK---FQSET 76
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
V K +D +R +L KLL +EE +L +I L++ E K L+ + G
Sbjct: 77 KPVHKS-------DDSVRWYLQLIGKVKLLKPEEEIQLAREISQLLQWEHIKVFLKEKLG 129
Query: 301 REPTLIEWAKAIGLS-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
REPT +EW+ A +S + K+ L++ ++E++I ANLRLVV +AK+Y RG+SL DL+
Sbjct: 130 REPTALEWSAACKISDVQKFKTVLYNSRKAKERMIAANLRLVVSIAKRYSNRGMSLQDLV 189
Query: 360 QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLE 419
QEGS+GL+++ EKF + G +F++YA WW++Q++ +AI HSRTIRLP ++Y LS + +
Sbjct: 190 QEGSLGLIRATEKFDSEKGFKFSTYATWWIKQSVSRAIADHSRTIRLPVHLYDTLSAIKK 249
Query: 420 AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
R+ E SP +E++A ++ +TV+KL ++ + LS+++P+ D DT S F++
Sbjct: 250 TTRILTIELGRSPTEEEIACKMDVTVDKLRSVLQSAQPTLSLEKPIKNDGDTAQLSDFIE 309
Query: 480 A 480
A
Sbjct: 310 A 310
>gi|225436223|ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 578
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 150/235 (63%), Gaps = 3/235 (1%)
Query: 238 SRKASVKKKLS-EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
S S +K++S + D +DPLR T +LLTA EE EL IQDL++LEK + L+
Sbjct: 248 SGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLE 307
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+FG +PT +WA A G+ + L+ + G ++K+I +N+RLV+ +AK YQG G+++
Sbjct: 308 ERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQ 367
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSK 416
DL+QEG GL++ EKF G +F++YA+WW++Q +RK++ SRTIRLP ++ +
Sbjct: 368 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 427
Query: 417 VLEA-KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
V EA K+LY + G H P+ E++A G+++++L ++ + P S+ Q + +Q+
Sbjct: 428 VKEARKQLYSENGRH-PNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQN 481
>gi|434388482|ref|YP_007099093.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428019472|gb|AFY95566.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 380
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 144/228 (63%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + KL + REP EWA +
Sbjct: 70 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERMREKLLNDLDREPHDREWAAVASM 129
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ L G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 130 PLNQFRHRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 189
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +
Sbjct: 190 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 249
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F++A G
Sbjct: 250 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEADG 296
>gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 150/235 (63%), Gaps = 3/235 (1%)
Query: 238 SRKASVKKKLS-EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
S S +K++S + D +DPLR T +LLTA EE EL IQDL++LEK + L+
Sbjct: 245 SGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLE 304
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+FG +PT +WA A G+ + L+ + G ++K+I +N+RLV+ +AK YQG G+++
Sbjct: 305 ERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQ 364
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSK 416
DL+QEG GL++ EKF G +F++YA+WW++Q +RK++ SRTIRLP ++ +
Sbjct: 365 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 424
Query: 417 VLEA-KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
V EA K+LY + G H P+ E++A G+++++L ++ + P S+ Q + +Q+
Sbjct: 425 VKEARKQLYSENGRH-PNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQN 478
>gi|414078407|ref|YP_006997725.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
gi|413971823|gb|AFW95912.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
Length = 391
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 146/228 (64%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I +L+ LE+ + +L + R+P EWA + L
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARKIAELLELERARERLCERLERDPRDSEWAAEVSL 140
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 141 PLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 200
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +
Sbjct: 201 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 260
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 261 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 307
>gi|168000881|ref|XP_001753144.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695843|gb|EDQ82185.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 581
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 151/240 (62%), Gaps = 15/240 (6%)
Query: 240 KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDL---------IRLEK 290
K+ +K +LS DP+ +L + KLLTA EE L +IQ ++LEK
Sbjct: 249 KSLIKHRLS------DPICSYLRDVKNSKLLTAFEEVALSRKIQVTTLFRFRQYTLKLEK 302
Query: 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG 350
+++LQ GREPT EW+ A+G++ + + G +++KL+N+NLRLVV + K YQG
Sbjct: 303 VRAELQRDMGREPTRSEWSLAVGMNQTLFELRIKEGQCAKDKLVNSNLRLVVSIVKNYQG 362
Query: 351 RGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENI 410
RG++L DL+Q GS+GL++ EKF P+ G +F++YA WW+RQ + ++I SR IRLP +I
Sbjct: 363 RGMTLPDLIQRGSLGLIRGAEKFDPEMGFKFSTYATWWIRQAVTRSITDQSRIIRLPVHI 422
Query: 411 YTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
Y ++S++ +++ + ++ E++A VGI+VEKL+ ++ R+P SM Q + D+D
Sbjct: 423 YEVISRINKSRMMIAEDQGRQARDEEVATAVGISVEKLDFILKSARLPASMDQLIGRDKD 482
>gi|443315526|ref|ZP_21045012.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784874|gb|ELR94728.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 372
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 146/228 (64%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL A+EE EL +I DL+ LE+ +L R+P EWA+A+ +
Sbjct: 62 DSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERVYDQLAETLQRDPQDAEWAEAVDM 121
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 122 PLPKFQRRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 181
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +
Sbjct: 182 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 241
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 242 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 288
>gi|209523577|ref|ZP_03272131.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|376004385|ref|ZP_09782099.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
gi|209495982|gb|EDZ96283.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|375327277|emb|CCE17852.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
Length = 387
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 153/244 (62%), Gaps = 5/244 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + KL
Sbjct: 65 RRAQTKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLIEH 120
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
+ REP EWA A+ + + + L G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 121 YHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 180
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++
Sbjct: 181 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 240
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ +L QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+
Sbjct: 241 KTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFI 299
Query: 479 DAAG 482
++ G
Sbjct: 300 ESDG 303
>gi|409993807|ref|ZP_11276936.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
gi|291570496|dbj|BAI92768.1| principal RNA polymerase sigma factor SigA [Arthrospira platensis
NIES-39]
gi|409935351|gb|EKN76886.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
Length = 387
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 153/244 (62%), Gaps = 5/244 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + KL
Sbjct: 65 RRAQTKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLIEH 120
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
+ REP EWA A+ + + + L G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 121 YHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 180
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++
Sbjct: 181 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 240
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ +L QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+
Sbjct: 241 KTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFI 299
Query: 479 DAAG 482
++ G
Sbjct: 300 ESDG 303
>gi|423065852|ref|ZP_17054642.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406712610|gb|EKD07794.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 372
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 153/244 (62%), Gaps = 5/244 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + KL
Sbjct: 50 RRAQTKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLIEH 105
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
+ REP EWA A+ + + + L G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 106 YHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 165
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++
Sbjct: 166 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 225
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ +L QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+
Sbjct: 226 KTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFI 284
Query: 479 DAAG 482
++ G
Sbjct: 285 ESDG 288
>gi|119489756|ref|ZP_01622514.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454330|gb|EAW35480.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 391
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 147/228 (64%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + KL EP EWA A+ +
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARRIADLLELERIREKLVEHNHCEPEDREWASAVDM 140
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ + + L+ G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 141 ALPEFRRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 200
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +
Sbjct: 201 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 260
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 261 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 307
>gi|428203576|ref|YP_007082165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981008|gb|AFY78608.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 374
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 155/244 (63%), Gaps = 6/244 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+ S KK +E D +R++L +LL A+EE EL +I DL+ LE+ +L+ +
Sbjct: 53 RETSKKKPYTE-----DSIRVYLQEIGRIRLLRAEEEIELARKIADLLELERIYEQLRKR 107
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
GR P EWA+A+ + + L+ G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 108 LGRFPNNREWAEAVEMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 167
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++
Sbjct: 168 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 227
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ ++ QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+
Sbjct: 228 KTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFI 286
Query: 479 DAAG 482
+A G
Sbjct: 287 EADG 290
>gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
Length = 574
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 161/261 (61%), Gaps = 5/261 (1%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKL-SEGFDRNDPLRLFLWGPETRKL--L 270
R ER++++ K + + + + + KK+L ++ D NDPLR + KL L
Sbjct: 216 RQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLKLL 275
Query: 271 TADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSR 330
T EE EL A IQDL++LE+ +++L + GR+PT +WA A G+ + L+ +H G +
Sbjct: 276 TVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCK 335
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
+K+I +N+RLV+ +AK YQG G++L DL+QEG GL++ EKF G +F++YA+WW++
Sbjct: 336 DKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIK 395
Query: 391 QTIRKAIFQHSRTIRLPENIYTLLSKVLEA-KRLYIQEGNHSPDKEDLARRVGITVEKLE 449
Q +RK++ SR IRLP ++ +V EA K+LY + G H P E++A G+++++L
Sbjct: 396 QAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKH-PKNEEIAEATGLSMKRLM 454
Query: 450 RLIFITRMPLSMQQPVWADQD 470
++ + P S+ + + +Q+
Sbjct: 455 AVLLSPKPPRSLDRKIGMNQN 475
>gi|56750888|ref|YP_171589.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 6301]
gi|56685847|dbj|BAD79069.1| principal RNA polymerase sigma factor RpoD1 [Synechococcus
elongatus PCC 6301]
Length = 399
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 146/228 (64%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL QI DL+ LE+ + +L Q R P+ EWA A+
Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ + L G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 208
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +
Sbjct: 209 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 268
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F++A G
Sbjct: 269 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEADG 315
>gi|434400420|ref|YP_007134424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428271517|gb|AFZ37458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 372
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 147/228 (64%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L +LL A+EE EL +I DL+ LE+ + ++ + R P+ EWA+ + +
Sbjct: 62 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERMADRLERYPSDAEWAEEVNM 121
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ + L G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 122 RLPEFRRRLFYGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 181
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +
Sbjct: 182 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 241
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F++A G
Sbjct: 242 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEADG 288
>gi|81299460|ref|YP_399668.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 7942]
gi|93141306|sp|P38023.2|RPOD1_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD1
gi|81168341|gb|ABB56681.1| Sigma-70 factor [Synechococcus elongatus PCC 7942]
Length = 399
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 146/228 (64%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL QI DL+ LE+ + +L Q R P+ EWA A+
Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ + L G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 208
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +
Sbjct: 209 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 268
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F++A G
Sbjct: 269 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEADG 315
>gi|217140|dbj|BAA01749.1| principal sigma factor [Synechococcus elongatus PCC 7942]
Length = 384
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 146/228 (64%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL QI DL+ LE+ + +L Q R P+ EWA A+
Sbjct: 74 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 133
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ + L G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 134 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 193
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +
Sbjct: 194 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 253
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F++A G
Sbjct: 254 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEADG 300
>gi|22298160|ref|NP_681407.1| RNA polymerase sigma factor RpoD [Thermosynechococcus elongatus
BP-1]
gi|22294339|dbj|BAC08169.1| principal RNA polymerase sigma factor [Thermosynechococcus
elongatus BP-1]
Length = 418
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 153/249 (61%), Gaps = 10/249 (4%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+ VKKK D +RL+L +LL ADEE EL +I DL+ +E+ + +L +
Sbjct: 91 RRTQVKKKHYT----EDSIRLYLQEIGRIRLLRADEEIELARKIADLLEMERVRDRLCQE 146
Query: 299 FGREPTLIE-----WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
G +E WAK +G++ + L G ++EK++ +NLRLVV +AK+Y RG+
Sbjct: 147 LGCTAEELERNPEPWAKELGMTVPAFRHRLFVGRKAKEKMVQSNLRLVVSIAKKYMNRGL 206
Query: 354 SLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTL 413
S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y
Sbjct: 207 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 266
Query: 414 LSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+S++ + +L QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+
Sbjct: 267 ISRIKKTTKLLSQEMGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 326
Query: 474 QSTFLDAAG 482
F+++ G
Sbjct: 327 -GDFIESDG 334
>gi|428771678|ref|YP_007163468.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685957|gb|AFZ55424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 386
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 151/245 (61%), Gaps = 7/245 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R S KK +E D +R++L +LL A+EE EL QI DL+ LE +S L
Sbjct: 64 RGQSKKKPFTE-----DSIRVYLQEIGRIRLLRAEEEIELARQIADLLDLEYIRSTLIEH 118
Query: 299 FGREPTLIEWAKAIGL-SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
GR PT EWA A + + R LH G +++K++ +NLRLVV +AK+Y RG+S D
Sbjct: 119 LGRVPTDEEWAIASDMPNMRQFNRRLHIGRKAKDKMVQSNLRLVVSIAKKYMNRGLSFQD 178
Query: 358 LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKV 417
L+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++
Sbjct: 179 LIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRI 238
Query: 418 LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTF 477
+ ++ Q+ P +E++A + +T+EKL + ++P+S++ P+ ++D+ F
Sbjct: 239 KKTTKMLSQKMGRKPTEEEIAEDMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDF 297
Query: 478 LDAAG 482
++A G
Sbjct: 298 IEADG 302
>gi|428223283|ref|YP_007107453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427996623|gb|AFY75318.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 393
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 148/231 (64%), Gaps = 4/231 (1%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG---REPTLIEWAKA 311
D +RL+L +LL ADEE EL +I DL++LE ++ +L Q + L +WA
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLQLEDKQRELAEQHDCDLEDVNLEDWAVE 139
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
+ + K+ LHSG +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ E
Sbjct: 140 MDMPLDKFKNRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 199
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHS 431
KF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE
Sbjct: 200 KFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRK 259
Query: 432 PDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 260 PSEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 309
>gi|443320294|ref|ZP_21049405.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442790001|gb|ELR99623.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 376
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 146/228 (64%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L +LL A+EE EL +I DL+ LE+++ KL + R P EWA ++ +
Sbjct: 66 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELEQKREKLWQELKRIPNDREWAASVEM 125
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ L+ G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 126 ELPAFRRRLYLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 185
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE P +
Sbjct: 186 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPTE 245
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A + +T+EKL + ++P+S++ P+ ++D+ F++A G
Sbjct: 246 EEIATHMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEADG 292
>gi|427712362|ref|YP_007060986.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376491|gb|AFY60443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 382
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 153/249 (61%), Gaps = 10/249 (4%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A+ KKK D +RL+L +LL ADEE EL +I DL+ LE+ + ++ Q
Sbjct: 55 RRATAKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRISEQ 110
Query: 299 FGREPTLIE-----WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
+P +E WA + ++ + L G ++EK++ +NLRLVV +AK+Y RG+
Sbjct: 111 LDCDPDDLERHPEPWASEVKMTLPAFRHRLFVGRRAKEKMVQSNLRLVVSIAKKYMNRGL 170
Query: 354 SLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTL 413
S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y
Sbjct: 171 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 230
Query: 414 LSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+S++ + +L QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+
Sbjct: 231 ISRIKKTTKLLSQEMGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 290
Query: 474 QSTFLDAAG 482
F+++ G
Sbjct: 291 -GDFIESDG 298
>gi|162605994|ref|XP_001713512.1| RNA-polymerase sigma factor [Guillardia theta]
gi|13794432|gb|AAK39807.1|AF165818_15 RNA-polymerase sigma factor [Guillardia theta]
Length = 460
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 146/228 (64%), Gaps = 1/228 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R +L +LL DEE +L +I L+ E K L+ + REPT EW A
Sbjct: 112 DDSVRWYLQLIGRVRLLRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNSEWTAACK 171
Query: 314 LS-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
+S R +S LH+ ++E+++ ANLRLVV +AK+Y RG+SL DL+QEGS+GL+++ EK
Sbjct: 172 VSDVRKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEK 231
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F + G +F++YA WWV+Q + +AI HSRTIRLP ++Y +S + + R E SP
Sbjct: 232 FDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRNLNIEIGRSP 291
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
+E++A+R+ ++VEKL ++ + LS+++P+ D DT+ S F++A
Sbjct: 292 TEEEIAKRMDMSVEKLRNVLQSAQPTLSLERPLKNDDDTSQLSDFIEA 339
>gi|224144900|ref|XP_002325455.1| predicted protein [Populus trichocarpa]
gi|222862330|gb|EEE99836.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 140/219 (63%)
Query: 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKA 311
D++DPLR F + +LL+A EE EL IQDL++LE+ + +L+ +FG +PT +WA A
Sbjct: 249 DQSDPLRFFRGASTSSRLLSATEEVELSEGIQDLLKLERIEEELKERFGGKPTFAQWAAA 308
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
+ L+ L+ ++K+I +N+RLV+ +AK YQG G++L DL+QEG GL++ VE
Sbjct: 309 ARVDQITLRKRLNYAILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGVE 368
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHS 431
KF G +F++YA+WW+RQ +R+++ SRTIRLP ++ +V EA++ + E
Sbjct: 369 KFDASKGFKFSTYAHWWIRQAVRRSLSDQSRTIRLPFHMVDATYRVKEARKQFYSENGRH 428
Query: 432 PDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
PD +++A G+++++L ++ + P S+ Q + + D
Sbjct: 429 PDDKEVAEATGLSMKRLSAVLLTPKAPRSLDQKMGFNMD 467
>gi|428217892|ref|YP_007102357.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427989674|gb|AFY69929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 412
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 148/232 (63%), Gaps = 5/232 (2%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG----REPTLIEWAK 310
D +RL+L +LL ADEE EL +I DL+ LE+++ +L ++ G E + +WA
Sbjct: 98 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELEQQREELANEMGLDDPEEVSDSDWAV 157
Query: 311 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370
+ + + L+ G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 158 KVDMPLPRFRRRLYEGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 217
Query: 371 EKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNH 430
EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE
Sbjct: 218 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGR 277
Query: 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 278 KPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 328
>gi|33866315|ref|NP_897874.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8102]
gi|33639290|emb|CAE08298.1| Putative principal RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
Length = 471
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 144/231 (62%), Gaps = 1/231 (0%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EWA
Sbjct: 156 GVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGREPDKKEWA 215
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 216 ALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 275
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 276 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFG 335
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 336 RKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 385
>gi|124025264|ref|YP_001014380.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL1A]
gi|123960332|gb|ABM75115.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. NATL1A]
Length = 420
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 147/232 (63%), Gaps = 1/232 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL++LE+E ++ +S+ G P++ EW
Sbjct: 102 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEW 161
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 162 AVLADMPLTRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 221
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 222 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEF 281
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 282 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 332
>gi|78185245|ref|YP_377680.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9902]
gi|78169539|gb|ABB26636.1| Sigma-70 factor [Synechococcus sp. CC9902]
Length = 451
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 145/232 (62%), Gaps = 1/232 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EW
Sbjct: 135 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEW 194
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 195 AALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 254
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 255 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEF 314
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 315 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 365
>gi|116072877|ref|ZP_01470142.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
gi|116064403|gb|EAU70164.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
Length = 451
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 145/232 (62%), Gaps = 1/232 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EW
Sbjct: 135 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEW 194
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 195 AALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 254
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 255 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEF 314
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 315 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 365
>gi|72383665|ref|YP_293020.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL2A]
gi|72003515|gb|AAZ59317.1| sigma-70 factor [Prochlorococcus marinus str. NATL2A]
Length = 420
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 147/232 (63%), Gaps = 1/232 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL++LE+E ++ +S+ G P++ EW
Sbjct: 102 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEW 161
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 162 AVLADMPLARFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 221
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 222 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEF 281
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 282 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 332
>gi|443325471|ref|ZP_21054165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442794934|gb|ELS04327.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 380
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 147/228 (64%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L +LL A+EE EL +I DL+ LE+ + +++ + RE + EW K + +
Sbjct: 70 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERIEDELDREISDAEWGKEVDM 129
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
R + L G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 130 ELRPFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 189
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE P +
Sbjct: 190 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPTE 249
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F++A G
Sbjct: 250 EEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEADG 296
>gi|428773077|ref|YP_007164865.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687356|gb|AFZ47216.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 391
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 144/229 (62%), Gaps = 2/229 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L +LL A+EE EL QI DL+ LE ++ GR PT EWA A +
Sbjct: 80 DSIRVYLQEIGRIRLLRAEEEIELARQIADLLDLEYIRATQIEHLGRIPTDEEWAIACDI 139
Query: 315 -SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ R LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 140 PNMRQFNRRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 199
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ Q+ P
Sbjct: 200 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKMLSQKMGRKPT 259
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+E++A + +T+EKL + ++P+S++ P+ ++D+ F++A G
Sbjct: 260 EEEIAEDMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEADG 307
>gi|260435157|ref|ZP_05789127.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260413031|gb|EEX06327.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 458
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 145/232 (62%), Gaps = 1/232 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EW
Sbjct: 142 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEW 201
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 202 AALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 261
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 262 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEF 321
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 322 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 372
>gi|78212231|ref|YP_381010.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9605]
gi|78196690|gb|ABB34455.1| Sigma-70 factor [Synechococcus sp. CC9605]
Length = 435
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 145/232 (62%), Gaps = 1/232 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EW
Sbjct: 119 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEW 178
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 179 AALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 238
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 239 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEF 298
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 299 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 349
>gi|427416876|ref|ZP_18907059.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425759589|gb|EKV00442.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 328
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 138/226 (61%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE L Q+Q L+ L++ K KL + G + +EW++A G
Sbjct: 17 TDTVRTYLQEIGRVPLLTHEEEIVLGKQVQCLMALQETKDKLDEELGHDANRVEWSQAAG 76
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S +L +L G ++ K+I ANLRLVV VAK+YQ R + DL+QEG++GL + VEKF
Sbjct: 77 ISETELVHQLRHGERAKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQEGTLGLERGVEKF 136
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G +F++YAYWW+RQ I +AI Q SRTIRLP +I L+K+ +R+ Q+ SP
Sbjct: 137 DPMKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKIKREQRVLAQKLGRSPS 196
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++ + + +T E++ + ++R P+S+ + +QDT Q D
Sbjct: 197 VGEIGQELDLTPEQVREYLTMSRQPISLDVRIGDNQDTELQELLED 242
>gi|357467593|ref|XP_003604081.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355493129|gb|AES74332.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 572
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 156/267 (58%), Gaps = 1/267 (0%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKL-SEGFDRNDPLRLFLWGPETRKLLTA 272
R ER++++ + S TN ++ S + KK++ ++ D +DPLR T +LLT
Sbjct: 218 RQTERKARRVRASGKAATNIVSFRSGSTTRKKRVRTQEVDYSDPLRYLRTTTRTTRLLTT 277
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE + IQDLI+LEK + L + G +PT +WA G+ + L+ L+ G +EK
Sbjct: 278 SEEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEK 337
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
+I +N+RLV+ VAK YQG G+SL DL+QEG GL++ EK+ G +F++YA+WW++Q
Sbjct: 338 MIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQA 397
Query: 393 IRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLI 452
+RK++ SRTIRLP ++ KV EA++ E PD E++A G+++++L ++
Sbjct: 398 VRKSLSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQPDDEEVAEATGLSMKRLSAVL 457
Query: 453 FITRMPLSMQQPVWADQDTTFQSTFLD 479
+ P S++Q V +Q D
Sbjct: 458 LTPKAPRSLEQKVGINQSLKLSEVLAD 484
>gi|170078438|ref|YP_001735076.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169886107|gb|ACA99820.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 318
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 139/219 (63%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LLT +EE ++Q ++ LEK K++L + +EP+L EWA+A L
Sbjct: 9 DPVRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANL 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S R+LK +L G +++K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 SQRELKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q S
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQANGRSASI 188
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+LA +G+T +++ + +R PLS+ V + DT
Sbjct: 189 PELADELGLTTKQVRDYLEKSRQPLSLDLRVGDNNDTEL 227
>gi|88807657|ref|ZP_01123169.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
gi|88788871|gb|EAR20026.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
Length = 447
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 144/232 (62%), Gaps = 1/232 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S G+ P EW
Sbjct: 131 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEW 190
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 191 AALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 250
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 251 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEF 310
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 311 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 361
>gi|86606677|ref|YP_475440.1| RNA polymerase sigma factor SigC [Synechococcus sp. JA-3-3Ab]
gi|86555219|gb|ABD00177.1| RNA polymerase sigma-70 factor family [Synechococcus sp. JA-3-3Ab]
Length = 364
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 137/227 (60%), Gaps = 7/227 (3%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +RL+L LL DEE L ++QD ++L + +LQ + GREPTL EWA
Sbjct: 43 TDLVRLYLQEIGRVPLLGRDEEVALAQRVQDYMKLLDVRLRLQKELGREPTLAEWAARAN 102
Query: 314 -------LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
L+ L+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 103 QYPEWANLTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 162
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
++VEKF P+ G RF++YAYWW+RQ I +AI SRTIRLP +I L+K+ +A+R Q
Sbjct: 163 ERAVEKFDPKKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQ 222
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
E +P ED+A + +TV ++ L+ +S++ V D+DT
Sbjct: 223 EKGRTPTIEDIASELEMTVPQVRELLVRVPRSVSLETKVGKDKDTEL 269
>gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba]
Length = 575
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 150/254 (59%), Gaps = 2/254 (0%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKK--LSEGFDRNDPLRLFLWGPETRKLLT 271
R ER++++ K + + ++ +S +KK S+ D NDPLR + KLLT
Sbjct: 215 RQTERKARRVKGLEKTASGMQSSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLT 274
Query: 272 ADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSRE 331
A EE +L IQDL++LE+ +++L + G +PT +WA A G+ + L+ + G ++
Sbjct: 275 AREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDKKTLRKRITHGTQCKD 334
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
++I +N+RLV+ +AK YQG G+ DL+QEG GL++ EKF G +F++YA+WW++Q
Sbjct: 335 RMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQ 394
Query: 392 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451
+RK++ SR IRLP ++ +V EA++ E P E++A G+++++L +
Sbjct: 395 AVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKQPKNEEVAEATGLSMKRLMAV 454
Query: 452 IFITRMPLSMQQPV 465
+ + P S+ Q +
Sbjct: 455 LLSPKPPRSLDQKI 468
>gi|352094758|ref|ZP_08955929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351681098|gb|EHA64230.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 443
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 144/232 (62%), Gaps = 1/232 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S G+ P EW
Sbjct: 127 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEW 186
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 187 AALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 246
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 247 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEF 306
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 307 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 357
>gi|390438835|ref|ZP_10227270.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
gi|389837758|emb|CCI31394.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
Length = 318
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 140/228 (61%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LLT +EE Q+Q LI LEK K L+SQ GREP+ +W++A
Sbjct: 8 TDPVRSYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLRSQLGREPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q+ +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA + +T +++ + +R PLS+ V +QDT D
Sbjct: 188 IAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDTG 235
>gi|1769596|gb|AAB39997.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 317
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 138/219 (63%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LLT +EE ++Q ++ LEK K++L + +EP+L EWA+A L
Sbjct: 9 DPVRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANL 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S R LK +L G +++K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 SQRQLKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q S
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEQSRTIRLPIHITEKLNKIKKAQRQLAQANGRSASI 188
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+LA +G+T +++ + +R PLS+ V + DT
Sbjct: 189 PELADELGLTTKQVRDYLEKSRQPLSLDLRVGDNNDTEL 227
>gi|148238947|ref|YP_001224334.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 7803]
gi|147847486|emb|CAK23037.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. WH 7803]
Length = 450
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 144/232 (62%), Gaps = 1/232 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S G+ P EW
Sbjct: 134 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEW 193
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 194 AALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 253
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 254 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEF 313
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 314 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 364
>gi|224126061|ref|XP_002319746.1| predicted protein [Populus trichocarpa]
gi|222858122|gb|EEE95669.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 144/220 (65%), Gaps = 2/220 (0%)
Query: 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKA 311
D++DPLR F + +LL+A EE EL IQDL++LE+ + +L+ +FG EP+ +WA A
Sbjct: 252 DQSDPLRFFRGASSSSRLLSATEEVELSEGIQDLLKLERIEEELKERFGGEPSFAQWAAA 311
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
G+ L+ L+ G ++K+I +N+RLV+ +AK YQG G++L DL+QEG GL++ E
Sbjct: 312 AGVDQLTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGTGMNLQDLVQEGCRGLVRGAE 371
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA-KRLYIQEGNH 430
KF G +F++YA+WW++Q +RK++ SRTIRLP ++ +V EA K+LY + G H
Sbjct: 372 KFDASKGFKFSTYAHWWIKQAVRKSLSDRSRTIRLPFHMVDATYRVKEARKQLYSENGRH 431
Query: 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
PD +++A G+++++L ++ + P S+ Q + + D
Sbjct: 432 -PDDKEVAEAAGLSMKRLSAVLLTPKAPRSLDQKMGFNMD 470
>gi|218247827|ref|YP_002373198.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8801]
gi|257060853|ref|YP_003138741.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8802]
gi|218168305|gb|ACK67042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256591019|gb|ACV01906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 318
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 137/227 (60%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LLT +EE ++Q + LE K L + G+EPT+ +WAKA +
Sbjct: 9 DPVRAYLREIGRVPLLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIAQWAKAAKM 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ ++L+S + +G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 TQKELRSAIEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R QE +
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQEKGRAATI 188
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA + +T ++ + R PLS+ V +QDT D
Sbjct: 189 AELAEELELTPRQVREYLERARQPLSLDLRVGDNQDTELGDLLEDTG 235
>gi|33863540|ref|NP_895100.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9313]
gi|33640989|emb|CAE21447.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
Length = 461
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 137/223 (61%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ + S G P EW
Sbjct: 145 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEW 204
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 205 ASLVEMPNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 264
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 265 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEF 324
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
P +E++A + +T+EKL + ++P+S++ P+ ++D+
Sbjct: 325 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDS 367
>gi|2385506|dbj|BAA22190.1| RpoD2 protein [Synechococcus elongatus PCC 7942]
Length = 320
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 136/225 (60%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L +LLTA+EE Q+Q L+ L +++L+ + G EP+ EWA A+ L
Sbjct: 11 DLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDL 70
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ DL E+ G ++ K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 71 NLEDLDREIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFD 130
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q SRTIRLP +I L+K+ + +R Q+ S
Sbjct: 131 PSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATA 190
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA + + +E++ I + R P+S+ V QDT Q D
Sbjct: 191 SELAEVLELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQELLED 235
>gi|254430902|ref|ZP_05044605.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
gi|197625355|gb|EDY37914.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
Length = 503
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 143/232 (61%), Gaps = 1/232 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL++LE+ ++ ++ G P EW
Sbjct: 187 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFEADHGHYPDNKEW 246
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 247 AALVDMPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 306
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + + QE
Sbjct: 307 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEF 366
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 367 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 417
>gi|428214900|ref|YP_007088044.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428003281|gb|AFY84124.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 334
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 143/248 (57%), Gaps = 2/248 (0%)
Query: 235 TYNSRKASVKKKL--SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
T SR +VK+ + D D +R +L LLT ++E Q+Q ++ + K
Sbjct: 3 TIKSRPTTVKQTYMGARQSDSTDTIRSYLHEIGRVPLLTHEQEIVFGKQVQQMMAFLEAK 62
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
L+ + REPT EWA+A+G S DLK+ + G S++K+I ANLRLVV +AK+YQ R
Sbjct: 63 ETLEKKLKREPTEEEWAEAVGHSVGDLKNLVKIGRRSKQKMIEANLRLVVAIAKKYQKRN 122
Query: 353 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYT 412
+ DL+QEG++GL + VEKF P G +F++YAYWW+RQ I +AI Q +RTIRLP +I
Sbjct: 123 LEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITE 182
Query: 413 LLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTT 472
L+K+ + +R Q SP ++ + + ++ + + R P+S+ V +QDT
Sbjct: 183 KLNKIKKVQRELTQNLGRSPSPSEIGEALELEPAQIREYLLMARQPVSLDLRVGDNQDTE 242
Query: 473 FQSTFLDA 480
Q DA
Sbjct: 243 LQDLLEDA 250
>gi|318041167|ref|ZP_07973123.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0101]
Length = 464
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 143/232 (61%), Gaps = 1/232 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL++LE+ ++ ++ G P EW
Sbjct: 148 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFETDHGHYPDTKEW 207
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 208 AALVDMPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 267
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + + QE
Sbjct: 268 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEF 327
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 328 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 378
>gi|425441618|ref|ZP_18821888.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|425463479|ref|ZP_18842815.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
gi|389717608|emb|CCH98320.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|389832304|emb|CCI24201.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
Length = 318
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 140/228 (61%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LLT +EE Q+Q LI LEK K L+++ GREP+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLRAKLGREPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q+ +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA + +T +++ + +R PLS+ V +QDT D
Sbjct: 188 IAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDTG 235
>gi|113954073|ref|YP_731235.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
gi|113881424|gb|ABI46382.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
Length = 440
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 144/232 (62%), Gaps = 1/232 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S G+ P EW
Sbjct: 124 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPETKEW 183
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 184 AALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 243
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 244 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEF 303
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 304 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 354
>gi|159903037|ref|YP_001550381.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9211]
gi|159888213|gb|ABX08427.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9211]
Length = 425
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 139/222 (62%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL+ LE+ + +S+ G P+ EWA
Sbjct: 110 GVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLNLEEIAIQFESENGHYPSKKEWA 169
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 170 ALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 229
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 230 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFG 289
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
P +E++A + +T+EKL + ++P+S++ P+ ++D+
Sbjct: 290 RKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDS 331
>gi|78778882|ref|YP_396994.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9312]
gi|78712381|gb|ABB49558.1| Sigma-70 factor [Prochlorococcus marinus str. MIT 9312]
Length = 393
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 147/231 (63%), Gaps = 1/231 (0%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 78 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWA 137
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ I + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 138 ELIDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 197
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 198 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFG 257
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 258 RKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 307
>gi|123965795|ref|YP_001010876.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9515]
gi|123200161|gb|ABM71769.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9515]
Length = 397
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 147/231 (63%), Gaps = 1/231 (0%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 82 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQFESEKGHFPSVREWA 141
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ I + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 142 ELIDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 201
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 202 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFG 261
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 262 RKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 311
>gi|254525463|ref|ZP_05137515.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
gi|221536887|gb|EEE39340.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
Length = 393
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 147/231 (63%), Gaps = 1/231 (0%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 78 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWA 137
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ I + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 138 ELIDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 197
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 198 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFG 257
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 258 RKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 307
>gi|172038507|ref|YP_001805008.1| RNA polymerase sigma factor SigD [Cyanothece sp. ATCC 51142]
gi|354554149|ref|ZP_08973454.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171699961|gb|ACB52942.1| group 2 sigma-70 RNA polymerase sigma factor D [Cyanothece sp. ATCC
51142]
gi|353553828|gb|EHC23219.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 318
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 139/225 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LLT +EE ++Q L+ LEK + ++ + G+EPT +WAKA L
Sbjct: 9 DPVRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLREEIIEETGQEPTESQWAKAAKL 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S R+ +S + SG +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 SKREFRSIVESGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q+ +
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATV 188
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA + +T +++ + R PLS+ V +QDT D
Sbjct: 189 TELAEELDLTPKQVREYLERARQPLSLDLRVGDNQDTELGDLLED 233
>gi|87123878|ref|ZP_01079728.1| Sigma-70 factor [Synechococcus sp. RS9917]
gi|86168447|gb|EAQ69704.1| Sigma-70 factor [Synechococcus sp. RS9917]
Length = 456
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 145/232 (62%), Gaps = 1/232 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EW
Sbjct: 140 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEW 199
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 200 AALVEMPVIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 259
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 260 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEF 319
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 320 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 370
>gi|124022438|ref|YP_001016745.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9303]
gi|123962724|gb|ABM77480.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
Length = 444
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 137/223 (61%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ + S G P EW
Sbjct: 128 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEW 187
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 188 AALVEMPNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 247
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 248 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEF 307
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
P +E++A + +T+EKL + ++P+S++ P+ ++D+
Sbjct: 308 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDS 350
>gi|300865041|ref|ZP_07109868.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
gi|300336978|emb|CBN55018.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
Length = 334
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 136/226 (60%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q +++L + K +L + REPT +EWA +
Sbjct: 24 TDTVRTYLHEIGRVALLTREQEIIYGKQVQQMMQLLEAKEELAKELRREPTEVEWALQVQ 83
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS +LK +H G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 84 LSEAELKRLMHQGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKF 143
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G +F++YAYWW+RQ I +AI QH+RTIRLP +I L+K+ + +R Q+ SP
Sbjct: 144 DPMRGYKFSTYAYWWIRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELAQQLGRSPT 203
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++ + + ++ + + R P+S+ V +QDT Q D
Sbjct: 204 PAEIGSALELHPSQIREYLLMARHPVSLDLRVGDNQDTELQELLED 249
>gi|19910022|dbj|BAB87262.1| RNA polymerase sigma factor [Guillardia theta]
Length = 490
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 144/228 (63%), Gaps = 1/228 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R +L +LL +EE +L +I L+ E K L+ + REPT EW A
Sbjct: 129 DDSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACK 188
Query: 314 LS-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
+S + +S LH+ ++E+++ ANLRLVV +AK+Y RG+SL DL+QEGS+GL+++ EK
Sbjct: 189 VSDVKKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEK 248
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F + G +F++YA WWV+Q + +AI HSRTIRLP ++Y +S + + R E SP
Sbjct: 249 FDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSP 308
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
+E++A ++ ++VEKL ++ + LS+++P+ D D + S F++A
Sbjct: 309 TEEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEA 356
>gi|81300555|ref|YP_400763.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
gi|123556657|sp|Q31ME3.1|RPOD2_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD2
gi|81169436|gb|ABB57776.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 136/225 (60%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L +LLTA+EE Q+Q L+ L +++L+ + G EP+ EWA A+ L
Sbjct: 11 DLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDL 70
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ DL ++ G ++ K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 71 NLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFD 130
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q SRTIRLP +I L+K+ + +R Q+ S
Sbjct: 131 PSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATA 190
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA + + +E++ I + R P+S+ V QDT Q D
Sbjct: 191 SELAEVLELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQELLED 235
>gi|254422659|ref|ZP_05036377.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190148|gb|EDX85112.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 298
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 131/211 (62%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT +EE L Q+Q L+ L S L REPT EWA A G+S +L + + +G
Sbjct: 3 LLTHEEEILLGKQVQKLMSLIAIHSSLVDTLDREPTRTEWAAAGGISEAELAAIVTAGEQ 62
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ +++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF P G RF++YAYWW
Sbjct: 63 AKHRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPSKGYRFSTYAYWW 122
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI + SRTIRLP +I L+K+ +A+R + Q+ +P ++A+ G T++++
Sbjct: 123 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQFTQQHGRTPTASEIAQATGFTIKQV 182
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+ +R PLS+ V +QDT D
Sbjct: 183 REYLDRSRQPLSLDLKVGDNQDTQLGDLLED 213
>gi|157412913|ref|YP_001483779.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9215]
gi|157387488|gb|ABV50193.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9215]
Length = 393
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 147/231 (63%), Gaps = 1/231 (0%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 78 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWA 137
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ I + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 138 ELIDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 197
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 198 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFG 257
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 258 RKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 307
>gi|443476204|ref|ZP_21066122.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443018873|gb|ELS33055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 394
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 149/231 (64%), Gaps = 4/231 (1%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI---EWAKA 311
D +RL+L +LL ADEE EL +I DL+ LE ++ +L ++ P + EWA
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELELKREELATEADCHPDDVREPEWAIK 140
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
+G+ + + LHSG +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ E
Sbjct: 141 MGMPLGEFRKRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 200
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHS 431
KF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE
Sbjct: 201 KFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRK 260
Query: 432 PDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 261 PTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESEG 310
>gi|359462714|ref|ZP_09251277.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 331
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 138/220 (62%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +RL+L LLT ++E +L ++Q ++RLE K +L G EP++ W KA
Sbjct: 21 SDNVRLYLRDIGRSPLLTPEQELQLGREVQTMVRLEAVKDQLAQSCGEEPSMETWTKAAD 80
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L +L++ L G+ +++K+I ANLRLVV +AK+Y+ R + L DL+QEG++GL ++ EK+
Sbjct: 81 LEIAELQTLLEKGHKAKQKMITANLRLVVTIAKKYRDRNLELLDLIQEGTLGLERAAEKY 140
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
PQ G RF++YAYWW+RQ I +AI + RTIRLP ++ L+K+ +R Q SP
Sbjct: 141 DPQRGFRFSTYAYWWIRQGITRAIAEQGRTIRLPIHLTEALNKIKRTQRELSQSLGRSPT 200
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
++A+ + +T EK+++ + LS+ + DQD++
Sbjct: 201 TAEVAQALSLTPEKVQQYLHCAHHTLSIDLKIGDDQDSSI 240
>gi|317969651|ref|ZP_07971041.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0205]
Length = 470
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 143/232 (61%), Gaps = 1/232 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL++LE+ ++ ++ G P EW
Sbjct: 154 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELANQFEADNGHYPDTKEW 213
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 214 ATLVEMPLVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 273
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + + QE
Sbjct: 274 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEF 333
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 334 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 384
>gi|126695861|ref|YP_001090747.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9301]
gi|126542904|gb|ABO17146.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9301]
Length = 394
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 147/231 (63%), Gaps = 1/231 (0%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 79 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWA 138
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ I + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 139 ELIDMPLPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 198
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 199 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFG 258
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 259 RKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 308
>gi|160331013|ref|XP_001712214.1| rpoD [Hemiselmis andersenii]
gi|159765661|gb|ABW97889.1| rpoD [Hemiselmis andersenii]
Length = 485
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 153/253 (60%), Gaps = 4/253 (1%)
Query: 229 QVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRL 288
++ N E K+ + L + +D +R +L +LL +EE +L +I L+
Sbjct: 107 EIINDEDERDSKSQTVRGLQKA---DDSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHW 163
Query: 289 EKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSGNSSREKLINANLRLVVHVAKQ 347
E K L+ + REPT EW A +S + ++ LH+ ++E+++ ANLRLVV +AK+
Sbjct: 164 EHVKISLREKLQREPTSSEWTAACKVSDVKKFRAILHNARRAKERMVAANLRLVVSIAKR 223
Query: 348 YQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
Y RG+SL DL+QEGS+GL+++ EKF + G +F++YA WWV+Q + +AI HSRTIRLP
Sbjct: 224 YVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLP 283
Query: 408 ENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWA 467
++Y +S + + R E SP +E++A ++ ++VEKL ++ + LS+++P+
Sbjct: 284 VHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKN 343
Query: 468 DQDTTFQSTFLDA 480
D D + S F++A
Sbjct: 344 DDDASQLSDFIEA 356
>gi|123968088|ref|YP_001008946.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
AS9601]
gi|123198198|gb|ABM69839.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. AS9601]
Length = 394
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 147/231 (63%), Gaps = 1/231 (0%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 79 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWA 138
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ I + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 139 ELIDMPLAKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 198
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 199 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFG 258
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 259 RKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 308
>gi|427417818|ref|ZP_18908001.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760531|gb|EKV01384.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 376
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 144/228 (63%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL A+EE EL +I DL+ LE+ + L EP +WA A+ +
Sbjct: 66 DSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERIRDDLSDGMDHEPDDADWAAAVDM 125
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 126 PLPAFRRRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 185
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +
Sbjct: 186 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTE 245
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E++A R+ +T+EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 246 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 292
>gi|33239946|ref|NP_874888.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237472|gb|AAP99540.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 438
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 138/222 (62%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL+ LE+ + +S+ G PT EWA
Sbjct: 123 GVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAIQFESEHGNYPTKKEWA 182
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ + + L ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 183 ALVNMPMARFRRRLMLARRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 242
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 243 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFG 302
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
P +E++A + +T+EKL + ++P+S++ P+ ++D+
Sbjct: 303 RKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDS 344
>gi|194477302|ref|YP_002049481.1| RNA polymerase sigma factor [Paulinella chromatophora]
gi|171192309|gb|ACB43271.1| RNA polymerase sigma factor [Paulinella chromatophora]
Length = 460
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 142/232 (61%), Gaps = 1/232 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ + + + G P EW
Sbjct: 144 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKISDLLYLEELAGQFEGRKGYYPDNKEW 203
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + +S + L G ++ K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 204 AALVEMSLIKFRRRLMLGRRAKAKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 263
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 264 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEF 323
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 324 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 374
>gi|428205040|ref|YP_007100666.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428013159|gb|AFY91275.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 335
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 132/211 (62%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E Q+Q +I L K L Q REPTL EWA+ + LS + L+ +L +G
Sbjct: 39 LLSHEQEIVFGKQVQQMIALVTAKENLAKQLQREPTLQEWAELMHLSDKALQKQLLAGQQ 98
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+++K+I ANLRLVV VAK+YQ R + DL+QEG++GL + VEKF P G RF++YAYWW
Sbjct: 99 AKQKMIEANLRLVVAVAKKYQKRNLDFLDLIQEGTLGLERGVEKFDPTRGFRFSTYAYWW 158
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ + +AI Q SRTIRLP ++ L+K+ +R Q+ +P ++A + + E++
Sbjct: 159 IRQGVTRAIAQQSRTIRLPIHMTEKLNKIKRTQRELSQKLGRTPTSIEIAEAIDLQPEQV 218
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+ + R P+S++ + +QDT Q+ D
Sbjct: 219 RECLLLARHPISLEARIGDEQDTELQNILQD 249
>gi|443327898|ref|ZP_21056505.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792509|gb|ELS01989.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 318
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 136/226 (60%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
ND +R +L LLT +EE ++Q I L K K LQ + G+EPT +WAK
Sbjct: 8 NDLVRSYLKEIGRVDLLTHEEEIHYAKRVQREIALVKIKDSLQEKLGQEPTYSQWAKEAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS ++LK+ L +G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 LSVKELKTTLEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q+
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRKLAQQKGRMAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA + +T +++ + +R P+S+ V + DT +D
Sbjct: 188 IAELAEELELTPKQVRDYLEKSRQPISLDVKVGDNNDTELGDMLVD 233
>gi|399950016|gb|AFP65672.1| RNA-polymerase sigma factor [Chroomonas mesostigmatica CCMP1168]
Length = 485
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 144/228 (63%), Gaps = 1/228 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R +L +LL +EE +L +I L+ E K L+ + REPT EW A
Sbjct: 132 DDSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACK 191
Query: 314 LS-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
+S + ++ LH+ ++E+++ ANLRLVV +AK+Y RG+SL DL+QEGS+GL+++ EK
Sbjct: 192 VSDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEK 251
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F + G +F++YA WWV+Q + +AI HSRTIRLP ++Y +S + + R E SP
Sbjct: 252 FDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSP 311
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
+E++A ++ ++VEKL ++ + LS+++P+ D D + S F++A
Sbjct: 312 TEEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEA 359
>gi|33861053|ref|NP_892614.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639785|emb|CAE18955.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 396
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 146/231 (63%), Gaps = 1/231 (0%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 81 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWA 140
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 141 ELTDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 200
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 201 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFG 260
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 261 RKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 310
>gi|116075287|ref|ZP_01472547.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
gi|116067484|gb|EAU73238.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
Length = 479
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 145/232 (62%), Gaps = 1/232 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EW
Sbjct: 163 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEW 222
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 223 AALVEMPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 282
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 283 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEF 342
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 343 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 393
>gi|87301677|ref|ZP_01084517.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87283894|gb|EAQ75848.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 349
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 150/238 (63%), Gaps = 2/238 (0%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
+SR+A + + D D +R +L LLT ++E L Q+Q+L+RLE+ + +L+
Sbjct: 19 DSRQAPIAVRTLPPVD-GDLVRSYLRDIGRVPLLTHEQEITLGRQVQELMRLEEAEQELE 77
Query: 297 SQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISL 355
+ G ++P+ EWA A GLS LK +L SG ++E+++ ANLRLVV VAK+Y R + L
Sbjct: 78 MRAGGQKPSAAEWASAAGLSPALLKRKLSSGRRAKERMVAANLRLVVSVAKKYTKRNMEL 137
Query: 356 HDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLS 415
DL+QEG++GL++ VEKF P G +F++YAYWW+RQ I +AI + SRTIRLP +I L+
Sbjct: 138 LDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLN 197
Query: 416 KVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
K+ + +R QE +P +LA V + E+++ L+ R P+S++ V +DT
Sbjct: 198 KLKKGQRELSQELGRTPTLSELAVCVELPEEEVKDLLCRARQPVSLETKVGDGEDTEL 255
>gi|148241988|ref|YP_001227145.1| RNA polymerase sigma factor RpoD [Synechococcus sp. RCC307]
gi|147850298|emb|CAK27792.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. RCC307]
Length = 401
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 142/232 (61%), Gaps = 1/232 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ + + G+ P EW
Sbjct: 85 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELADQYEEDHGKYPDNREW 144
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 145 AVLVDMPPIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 204
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 205 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEF 264
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 265 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 315
>gi|86610159|ref|YP_478921.1| RNA polymerase sigma factor SigC [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558701|gb|ABD03658.1| RNA polymerase sigma-70 factor family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 366
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 138/227 (60%), Gaps = 7/227 (3%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW-AKA- 311
D +RL+L LL DEE L ++QD ++L + +LQ + GR+PTL EW AKA
Sbjct: 45 TDLVRLYLQEIGRVPLLGRDEEVALAQKVQDYMKLLDLRLRLQKELGRDPTLAEWVAKAN 104
Query: 312 -----IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
L+ L+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 105 QYPEWAQLTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 164
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
++VEKF P+ G RF++YAYWW+RQ I +AI SRTIRLP +I L+K+ +A+R Q
Sbjct: 165 ERAVEKFDPKKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQ 224
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
E +P ED+A + +T ++ L+ +S++ V D+DT
Sbjct: 225 EKGRTPTIEDIASELEMTPPQVRELLVRVPRSVSLETKVGKDKDTEL 271
>gi|56752354|ref|YP_173055.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
gi|56687313|dbj|BAD80535.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
Length = 320
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 135/225 (60%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L +LLTA+EE Q+Q L+ L +++L+ + G EP+ EWA A+ L
Sbjct: 11 DLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDL 70
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ DL ++ G ++ K+I ANLRLVV +AK+YQ R + DL+QEG++GL + EKF
Sbjct: 71 NLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGFEKFD 130
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q SRTIRLP +I L+K+ + +R Q+ S
Sbjct: 131 PSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATA 190
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA + + +E++ I + R P+S+ V QDT Q D
Sbjct: 191 SELAEVLELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQELLED 235
>gi|422303427|ref|ZP_16390778.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
gi|389791615|emb|CCI12597.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
Length = 318
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 139/226 (61%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL+ +EE Q+Q LI LEK K L+++ GR+P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGRDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q+ +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA + +T +++ + R PLS+ V +QDT D
Sbjct: 188 IAELAEELDLTPKQVRDYLERARQPLSLDLKVGDNQDTELGELLED 233
>gi|126659335|ref|ZP_01730471.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
gi|126619417|gb|EAZ90150.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
Length = 318
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 138/225 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LLT +EE ++Q L+ LEK + + + G+EPT I+WAK +
Sbjct: 9 DPVRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLRDDIIEETGQEPTEIQWAKTAKI 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++L+S + G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 SRKELQSIIEIGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q+ +
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATV 188
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA + +T +++ + R PLS+ V +QDT D
Sbjct: 189 VELAEELDLTPKQVREYLERARQPLSLDLRVGDNQDTELGDLLED 233
>gi|427701422|ref|YP_007044644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344590|gb|AFY27303.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 432
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 142/232 (61%), Gaps = 1/232 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE++ ++ ++ G P EW
Sbjct: 116 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLELEEKAAEFEADKGHFPDTKEW 175
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 176 AAIFDMPLIKFRRRLMLGRRAKEKMVLSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 235
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + + QE
Sbjct: 236 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEF 295
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 296 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 346
>gi|411117480|ref|ZP_11389967.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713583|gb|EKQ71084.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 407
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 133/212 (62%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL QI+ L +E+ +S+L + GR P+ E A A+GL+ R L+ +LH
Sbjct: 109 LLKPDEEVELANQIRYLNEIEELRSQLTQELGRCPSKAELADAVGLTERQLEHQLHRSRV 168
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYWW
Sbjct: 169 AKRKMIRSNLRLVVSIAKRYINRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWW 228
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I + I SRTIRLP +I L+K+ A+R ++ N +P + +LA + +T E+L
Sbjct: 229 IRQGITRTIANDSRTIRLPVHIVEKLNKLKGAQRDLKRKLNRNPTEAELAEALEVTPEQL 288
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
+ L + R LS+ V D+DT DA
Sbjct: 289 QNLQQVHRRSLSLNYRVGKDEDTELVDLLEDA 320
>gi|425471805|ref|ZP_18850656.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
gi|389882237|emb|CCI37274.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
Length = 318
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 139/228 (60%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LLT +EE Q+Q LI LEK K L+++ G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLKAKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q+ +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA + +T +++ + +R PLS+ V +QDT D
Sbjct: 188 IAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDTG 235
>gi|87303408|ref|ZP_01086196.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87282056|gb|EAQ74018.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 330
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 137/206 (66%), Gaps = 1/206 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGN 327
LLT ++E L Q+Q+L+RLE+ + +L+ + G ++P+ EWA A GLS LK +L SG
Sbjct: 34 LLTHEQEITLGRQVQELMRLEETEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLSSGR 93
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 94 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 153
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQ I +AI + SRTIRLP +I L+K+ + +R QE +P +LA V + E+
Sbjct: 154 WIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTLSELAVCVELPEEE 213
Query: 448 LERLIFITRMPLSMQQPVWADQDTTF 473
++ L+ R P+S++ V +DT
Sbjct: 214 VKDLLCRARQPVSLETKVGDGEDTEL 239
>gi|427723688|ref|YP_007070965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427355408|gb|AFY38131.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 318
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 137/220 (62%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R +L LLT +EE ++Q ++ LEK K++L EPTL EWAKA
Sbjct: 8 SDPVRSYLKEIGRVPLLTHEEEVVYSRRVQQMVALEKLKAELTEHQEDEPTLKEWAKAAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
++ ++LK + G +++K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ITQKELKKRMSIGAQAKQKMVEANLRLVVSVAKKYIKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q+ +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQKNGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+LA + +T +++ + +R PLS+ V + DT
Sbjct: 188 IPELAEELDLTTKQVRDYLEKSRQPLSLDLRVGDNNDTEL 227
>gi|86609652|ref|YP_478414.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558194|gb|ABD03151.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 403
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 149/234 (63%), Gaps = 6/234 (2%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG--REPTLIE---W 308
+D +R++L +LL ADEE EL +I DL+ LE+ + + + G +P + W
Sbjct: 87 DDSIRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPDTLW 146
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A+ + +S + + LH G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 147 AEEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 206
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE
Sbjct: 207 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKVTKLLSQEL 266
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
P +E++A R+ IT+EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 267 GRKPTEEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESDG 319
>gi|166367266|ref|YP_001659539.1| RNA polymerase sigma factor SigD [Microcystis aeruginosa NIES-843]
gi|166089639|dbj|BAG04347.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 318
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 138/228 (60%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LLT +EE Q+Q LI LEK K L+ + G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLKVKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q+ +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA + +T +++ + +R PLS+ V +QDT D
Sbjct: 188 IAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDTG 235
>gi|220907004|ref|YP_002482315.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7425]
gi|219863615|gb|ACL43954.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 327
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 135/226 (59%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E L Q+Q L+ L + + KL + R PT EWA+
Sbjct: 17 TDMVRTYLHEIGRVPLLTHEQEIVLGKQVQQLMELLEAREKLTTSLDRSPTAEEWAEQAN 76
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS DL + + G +++K+I ANLRLVV VAK+YQ R + L DL+QEG++GL + VEKF
Sbjct: 77 LSVADLNTAVRRGQRAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKF 136
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G +F++YAYWW+RQ I +AI Q +RT+RLP +I L+K+ +A+R+ Q S
Sbjct: 137 DPTRGYKFSTYAYWWIRQAITRAIAQQARTVRLPIHITEKLNKIKKAQRVLSQRLGRSAT 196
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A+ + + ++ + + R P+S+ V +QDT + D
Sbjct: 197 PAEIAQELELEPSQIREYLTLARQPVSLDLRVGDNQDTELRDLLED 242
>gi|254413477|ref|ZP_05027247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196179584|gb|EDX74578.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 331
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 135/228 (59%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L LE+ K L Q G EPTL EWAKA
Sbjct: 20 TDLVRTYLQEIGRVPLLTHEQEILYGKQVQRLNALEQTKESLFEQLGYEPTLCEWAKASS 79
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS +L+S + +G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 80 LSEAELQSCIRAGQTAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 139
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q +
Sbjct: 140 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQTLGRAAT 199
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA + +T +++ + R PLS+ V +QDT D+
Sbjct: 200 ISELATELDLTPKQVREYLEKARQPLSLDLRVGDNQDTELGELLEDSG 247
>gi|33241240|ref|NP_876182.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33238770|gb|AAQ00835.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 328
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 148/239 (61%), Gaps = 4/239 (1%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
+YN KK +E D +R +L LLT ++E L Q+Q+LI LEK + +
Sbjct: 3 SYNPLIVPAKKSATE----IDLVRSYLRDIGRVPLLTNEQEITLGRQVQELISLEKLERE 58
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
L+S G++P+ + A G+S R+L L G ++E++++ANLRLVV VAK+Y R +
Sbjct: 59 LESTNGKKPSKEDLAIDAGISVRELSKRLKRGVRAKERMVSANLRLVVSVAKKYTKRNME 118
Query: 355 LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLL 414
L DL+QEG++GL++ VEKF P G +F++YAYWW+RQ I +AI + SR IRLP +I LL
Sbjct: 119 LLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWWIRQGITRAIAEKSRIIRLPIHITELL 178
Query: 415 SKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+K+ + +R Q +P ++L+ V I VE+++ L+F P+S++ V +DT+
Sbjct: 179 NKLKKGQRELSQHLERTPTMQELSAYVEIPVEEVKDLMFRASQPVSLESKVGDGEDTSL 237
>gi|443668768|ref|ZP_21134260.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159026170|emb|CAO88820.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330730|gb|ELS45425.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 318
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 139/228 (60%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL+ +EE Q+Q LI LEK K L+++ G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q+ +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA + +T +++ + +R PLS+ V +QDT D
Sbjct: 188 IAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDTG 235
>gi|425455366|ref|ZP_18835086.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
gi|389803770|emb|CCI17345.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
Length = 318
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 139/228 (60%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL+ +EE Q+Q LI LEK K L+++ G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q+ +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA + +T +++ + +R PLS+ V +QDT D
Sbjct: 188 IAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDTG 235
>gi|425445105|ref|ZP_18825143.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
gi|389734975|emb|CCI01445.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
Length = 318
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 139/228 (60%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL+ +EE Q+Q LI LEK K L+++ G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q+ +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA + +T +++ + +R PLS+ V +QDT D
Sbjct: 188 IAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDTG 235
>gi|67922139|ref|ZP_00515654.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67856039|gb|EAM51283.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 318
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 139/225 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LL+ +EE ++Q LI LEK + ++ + G+EPT +WAKA L
Sbjct: 9 DPVRAYLKEIGRVPLLSHEEEILYAKRVQRLINLEKLREEIIQETGKEPTNSQWAKAAKL 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++ S + +G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 SRKEFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q+ +
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATI 188
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA + +T +++ + +R PLS+ V +QDT D
Sbjct: 189 SELAEELDLTPKQVRDYLERSRQPLSLDLRVGDNQDTELGDLLED 233
>gi|425434950|ref|ZP_18815414.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|425452918|ref|ZP_18832733.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440756483|ref|ZP_20935684.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675427|emb|CCH95484.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|389765103|emb|CCI08956.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440173705|gb|ELP53163.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 318
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 139/228 (60%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL+ +EE Q+Q LI LEK K L+++ G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q+ +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA + +T +++ + +R PLS+ V +QDT D
Sbjct: 188 IAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQDTELGELLEDTG 235
>gi|425458944|ref|ZP_18838430.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
gi|389823431|emb|CCI28324.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
Length = 318
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 139/226 (61%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL+ +EE Q+Q LI LEK K L+++ G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q+ +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA + +T +++ + +R PLS+ V +QDT D
Sbjct: 188 IAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQDTELGELLED 233
>gi|428773684|ref|YP_007165472.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687963|gb|AFZ47823.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 328
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 140/238 (58%), Gaps = 6/238 (2%)
Query: 250 GFDRN-----DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT 304
G D+ D +R +L LL+ ++E Q+Q ++ L +K +L REPT
Sbjct: 8 GMDKKKVNTVDMVRTYLQEIGKVPLLSHEQEIVFGKQVQIMMSLYAQKEELAENLDREPT 67
Query: 305 LIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSM 364
L EWA+A + +LK +H G +++K+I ANLRLVV +AK+YQ R + DL+QEGS+
Sbjct: 68 LEEWAQAAEKTPAELKKLIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSL 127
Query: 365 GLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLY 424
GL + VEKF P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ + +R
Sbjct: 128 GLERGVEKFDPTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQREL 187
Query: 425 IQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
Q+ SP++ ++A + + ++ I R P+S+ V +QDT S L+ G
Sbjct: 188 SQKLGRSPNQSEIANALDLEPSQIREYFSIARQPISLDVKVGDNQDTEL-SELLEDEG 244
>gi|37522141|ref|NP_925518.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35213141|dbj|BAC90513.1| principal RNA polymerase sigma factor [Gloeobacter violaceus PCC
7421]
Length = 400
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 147/257 (57%), Gaps = 30/257 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-------------- 300
D +R++L +LL ADEE EL QI DL+ LE+ ++++ +
Sbjct: 61 DSIRVYLQEIGRIRLLRADEEIELARQIADLLTLERLRARMGAAGTDMHSDVADLLGDDD 120
Query: 301 ---------------REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVA 345
E L WA+A G++ + + G +++K++ +NLRLVV +A
Sbjct: 121 LLTENLLASGDQVTESEQELRRWAEAAGIAYEQFRDRIAYGRRAKDKMVQSNLRLVVSIA 180
Query: 346 KQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIR 405
K+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIR
Sbjct: 181 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 240
Query: 406 LPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPV 465
LP ++Y +S++ + +L QE P +E++A R+ +T+EKL + ++P+S++ P+
Sbjct: 241 LPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 300
Query: 466 WADQDTTFQSTFLDAAG 482
++D+ F++A G
Sbjct: 301 GKEEDSRL-GDFIEADG 316
>gi|416388961|ref|ZP_11685251.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357264325|gb|EHJ13231.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 318
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 139/225 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LL+ +EE ++Q L+ LEK + ++ + G+EPT +WAKA L
Sbjct: 9 DPVRAYLKEIGRVPLLSHEEEILYAKRVQRLVNLEKLREEIIQETGKEPTNSQWAKAAKL 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++ S + +G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 SRKEFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q+ +
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATI 188
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA + +T +++ + +R PLS+ V +QDT D
Sbjct: 189 SELAEELDLTPKQVRDYLERSRQPLSLDLRVGDNQDTELGDLLED 233
>gi|427736788|ref|YP_007056332.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427371829|gb|AFY55785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 327
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 135/225 (60%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q +++L + K L + GRE +L EW + +GL
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIIFGKQVQKMMKLVEAKEALAKKLGREVSLEEWTQEVGL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ +LK + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 AETELKKTVLEGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGALGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q RTIRLP +I L+K+ + +R Q+ SP
Sbjct: 138 PTRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPIP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A+ + + ++ + + R P+S+ V +QDT Q D
Sbjct: 198 SEIAKELDLEPAQIREYLNMARQPVSLDVRVGDNQDTELQEMLED 242
>gi|303279757|ref|XP_003059171.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459007|gb|EEH56303.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 587
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 150/248 (60%), Gaps = 5/248 (2%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
N + + K+ S + D ++ +L + LLT ++E EL +IQDL+ LE + +L+
Sbjct: 236 NVVRKTTKRDPSTSRRQTDSMKTYLKDIGSVSLLTGEQEVELAMRIQDLVYLEGVREQLE 295
Query: 297 SQFGR-----EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGR 351
+ R E + +WA A ++ R+LK L +G ++ ++I ANLRLVV +AK+Y +
Sbjct: 296 EEAKRRKQTSEVSNFDWAIAANVTERELKERLDAGKRAKNQMIQANLRLVVSIAKRYANK 355
Query: 352 GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIY 411
+S DL+QEG +GL++ EKF + G +F++YA+WW+RQ + ++I SRTIRLP +++
Sbjct: 356 SMSFQDLIQEGCVGLIRGAEKFDFKRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLF 415
Query: 412 TLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
++S++ + +R + + P E++A + +TVEK+ ++ + +P+S+ Q V D
Sbjct: 416 EIISRMSKVERQLVMKYGRDPTTEEIAEVMDMTVEKINQIQKASLVPISLSQSVNDDDSR 475
Query: 472 TFQSTFLD 479
T + T +D
Sbjct: 476 TVEETLVD 483
>gi|300868245|ref|ZP_07112876.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
gi|300333769|emb|CBN58060.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
Length = 319
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 134/229 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L + K+ L + GR+PT EWA+A G
Sbjct: 9 TDSVRAYLREIGRVPLLTHEQEILYGKQVQRTTALHEAKNALALELGRDPTRTEWAEAAG 68
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS +L+ +H+G ++ ++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 LSETELQRTIHAGERAKRMMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 128
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q+ +
Sbjct: 129 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRYLAQKLGRAAT 188
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+LA + +T +++ + R+PLS+ V +QDT D
Sbjct: 189 ANELAAELELTPKQIREYLERARLPLSLDLRVGDNQDTELGDLLEDTGA 237
>gi|428225416|ref|YP_007109513.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985317|gb|AFY66461.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 327
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 133/226 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q ++ L +++ + GREP+ EWA+ +
Sbjct: 17 TDMVRTYLHEIGRVPLLTHEQEIIYGKQVQQMMALLQKQEAIAETLGREPSQQEWAEGVQ 76
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS DL L G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 77 LSEADLAKALKQGQRAKQKMIEANLRLVVSIAKKYQKRNLEFLDLIQEGTLGLERGVEKF 136
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +R Q+ S
Sbjct: 137 DPSRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKFGRSAT 196
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A + + E++ + I+R P+S+ V +QDT Q D
Sbjct: 197 PAEIAEALELETEQIREYLTISRQPISLDVRVGDNQDTELQELLED 242
>gi|219111033|ref|XP_002177268.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411803|gb|EEC51731.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 324
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 134/197 (68%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLTADEE+ L +IQ +I+ E L S+ R PT+ EWA A G + D + +
Sbjct: 10 ELLTADEEYSLGMKIQFMIKCELVHEGLSSKLMRLPTIEEWAAACGGTATDFVEMVMTSR 69
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++++++ +N+RLVV +A++Y G+SL DL+QEGS+GL ++ EKF+P+ G +F++YA W
Sbjct: 70 EAKQRMVQSNMRLVVSIARKYSNVGVSLQDLVQEGSLGLSRAAEKFEPKKGFKFSTYASW 129
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W++Q + ++I HSRTIRLP +++ LL++V + + +E + +P E++A +G+T++K
Sbjct: 130 WIQQAVFRSIAYHSRTIRLPVHVHNLLNRVRKVRNNLQRELSRTPTNEEMAEELGMTLQK 189
Query: 448 LERLIFITRMPLSMQQP 464
+++ +T+ +S++ P
Sbjct: 190 YNKMLRLTKRSISLETP 206
>gi|119489578|ref|ZP_01622338.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454490|gb|EAW35638.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 319
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 134/226 (59%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L++ K KL + GREP+ EWA+ G
Sbjct: 9 TDSVRTYLREIGRVPLLTHEQEILYGKQVQQSAILQEGKEKLAKRLGREPSYAEWAENAG 68
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S ++LK L G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 VSLKELKQALEDGQTAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 128
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q+ +
Sbjct: 129 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRSLAQDLGRAAT 188
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA + + +++ + R+PLS+ V +QDT D
Sbjct: 189 IAELADELDLNPKQIREYLERARLPLSLDLRVGDNQDTELGDLLED 234
>gi|282895449|ref|ZP_06303586.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199482|gb|EFA74345.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 327
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 141/241 (58%), Gaps = 2/241 (0%)
Query: 241 ASVKKKLSEGFDR--NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
++VKK+ G + D +R +L LL ++E Q+Q ++ L + K L +
Sbjct: 2 STVKKESDNGKTKLTADMVRTYLREIGRVPLLNREQEIIYGKQVQQMMILVEAKEALAKE 61
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
G EP+L EWA + S DLK ++ +G +++K+I ANLRLVV +AK+YQ R + DL
Sbjct: 62 LGYEPSLSEWAIYVNQSENDLKHKISTGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDL 121
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEG++GL + VEKF P G +F++YAYWW+RQ I +AI Q RTIRLP +I L+K+
Sbjct: 122 IQEGTLGLERGVEKFDPTMGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIK 181
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ +R Q+ SP ++A+ + + ++ + I R P+S+ V +QDT Q
Sbjct: 182 KVQRELAQKLGRSPSPTEIAKELELEPAQIREYLNIARQPISLDVRVGDNQDTELQEMLE 241
Query: 479 D 479
D
Sbjct: 242 D 242
>gi|186681941|ref|YP_001865137.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186464393|gb|ACC80194.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 339
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 132/226 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R +L LLT ++E Q+Q ++ L K +L + EPTL EWA +
Sbjct: 29 DDIVRSYLQEIGRVDLLTREQEVIFAQQVQLMMNLLAAKEELAVKLDHEPTLQEWADRVE 88
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L L+ +L G+ +++K+I ANLRLVV VAK+YQ R + DL+QEG++GL + V+KF
Sbjct: 89 LGAEVLELQLSQGHQAKQKMIQANLRLVVAVAKKYQHRNLEFMDLIQEGTLGLERGVDKF 148
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G +F++YAYWW+RQ I +AI Q RTIRLP +++ L+K+ +R Q+ P
Sbjct: 149 DPALGYKFSTYAYWWIRQGITRAIAQQGRTIRLPIHVFEKLNKIKRVQRELSQQLGRVPT 208
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A + +T ++ +++ R P S++ V QDT Q D
Sbjct: 209 TAEIANALSLTPSQVRECLYLARQPFSLEARVGEQQDTELQDILED 254
>gi|428768890|ref|YP_007160680.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428683169|gb|AFZ52636.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 363
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 134/212 (63%), Gaps = 1/212 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL+A+EE L ++ L E+++ +L Q R P+ +E AKA+GL S R L + L+ G
Sbjct: 64 LLSAEEEVNLAYAVKFLSDCEEKQQELHRQLERTPSKMELAKAMGLESERQLDNRLYKGR 123
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 124 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 183
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQ I + I SRTIRLP +I L+K+ +A+R+ Q+ P +++LA +GIT +
Sbjct: 184 WIRQAITRTIANDSRTIRLPIHIVEKLNKLKKAQRILKQDLQRQPTEKELAEEMGITRQA 243
Query: 448 LERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
L +L+ + R LS+ V +DT D
Sbjct: 244 LHQLLQLKRQSLSLNHRVGKGEDTELMELLED 275
>gi|158335492|ref|YP_001516664.1| RNA polymerase sigma factor [Acaryochloris marina MBIC11017]
gi|158305733|gb|ABW27350.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 327
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 134/226 (59%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q ++ L + + + GREP+L EWA+
Sbjct: 17 TDMVRTYLHEIGRVPLLTHEEEIVFGKQVQAMMALLDLQKTVMDELGREPSLEEWAEKAN 76
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS L+ LH G +++K+I ANLRLVV VAK+YQ R + L DL+QEG++GL + VEKF
Sbjct: 77 LSPSQLELSLHQGQQAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKF 136
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +A+R Q+ S
Sbjct: 137 DPTRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKAQRELSQKLGRSAT 196
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A + + ++ + I R P+S+ V +QDT + D
Sbjct: 197 PAEIAEALELEPSQIRDYLTIARQPISLDLRVGDNQDTELRDLLED 242
>gi|78211648|ref|YP_380427.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9605]
gi|78196107|gb|ABB33872.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9605]
Length = 335
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 134/205 (65%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q+L+ LE +S+L+S+ G +P+ + AKA GLS LK +L G
Sbjct: 40 LLTHEQEITLGRQVQELMDLESLESELKSKAGEKPSRDQLAKASGLSSIQLKRKLQHGRR 99
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI + SRTIRLP +I +L+K+ + +R QE +P +LA V + + +
Sbjct: 160 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAEFVELPEDDV 219
Query: 449 ERLIFITRMPLSMQQPVWADQDTTF 473
+ L+ R P+S++ V DT
Sbjct: 220 KDLMCRARQPVSLEMKVGDGDDTEL 244
>gi|427709357|ref|YP_007051734.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361862|gb|AFY44584.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 132/226 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L++ + L SQ GREPTL EWAK
Sbjct: 22 TDLVRTYLREIGRVPLLTHEEEIRYGKQVQRSTALQEVRESLASQLGREPTLEEWAKESK 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L DL + G ++ +++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 82 LDIADLNDAIADGEIAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 141
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + +RTIRLP +I L+K+ +A+R Q+ +P
Sbjct: 142 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPS 201
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA + +T +++ + R+PLS+ + + DT D
Sbjct: 202 VGELATELDLTPKQVREYLEKARLPLSLDLRLGDNYDTELGEMLED 247
>gi|254424042|ref|ZP_05037760.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196191531|gb|EDX86495.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 319
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 130/214 (60%)
Query: 260 FLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDL 319
+L G LLT ++E L +Q L++LE + L REPTL EWA+A LS L
Sbjct: 14 YLKGIGRFPLLTHEQEITLGKTVQQLMKLEAIRDDLTETMDREPTLAEWAEATNLSPEAL 73
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
K + G +++K++ +NLRLVV +AK+Y+G + + DL+QEGS+GL + VEKF P G
Sbjct: 74 KKTVEIGQQAKDKMMRSNLRLVVSIAKKYRGSKLDMMDLIQEGSLGLCRGVEKFDPLKGY 133
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLAR 439
RF++YAYWW+RQ I +AI RTIRLP +I LSK+ +A+R E ++A
Sbjct: 134 RFSTYAYWWIRQAITRAIADTGRTIRLPIHINEKLSKIRKAQREVSLELGRPATVSEVAE 193
Query: 440 RVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+V + EK+ L +R+PLS+ + ++Q+T
Sbjct: 194 KVSLPAEKVRELQRQSRLPLSLNMRIGSEQNTEL 227
>gi|284929771|ref|YP_003422293.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
gi|284810215|gb|ADB95912.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
Length = 318
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 134/225 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LLT +EE ++Q + LEK + + G+EPT +WA+A +
Sbjct: 9 DPVRSYLREIGRVPLLTHEEEILYAKRVQRFVDLEKYRELFTKETGKEPTETQWAQAARI 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S R+L S + SG +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 SRRELHSAIASGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQARGRDATI 188
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA + +T +++ + R PLS+ V +QDT D
Sbjct: 189 AELAEELDLTPKQVREYLERARQPLSLDLRVGDNQDTELGDLLED 233
>gi|33863339|ref|NP_894899.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640788|emb|CAE21243.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 320
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 135/202 (66%), Gaps = 1/202 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+Q+L+ LE+ +S+L+ Q G + E AKA GLS LK +L SG
Sbjct: 25 LLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQSGRR 84
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E++++ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 85 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 144
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI + SRTIRLP +I +L+K+ + +R QE +P +LA V + E++
Sbjct: 145 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELAEFVELPEEEV 204
Query: 449 ERLIFITRMPLSMQQPVWADQD 470
+ L+ R P+S++ V D D
Sbjct: 205 KDLMCRARQPMSLEMKV-GDGD 225
>gi|86607034|ref|YP_475797.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
gi|86555576|gb|ABD00534.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
Length = 404
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 148/234 (63%), Gaps = 6/234 (2%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG--REPTLIE---W 308
+D +R++L +LL ADEE EL +I DL+ LE+ + + + G +P + W
Sbjct: 88 DDSIRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPETLW 147
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A+ + +S + + LH G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 148 AEEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 207
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + + QE
Sbjct: 208 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKVTKQLSQEL 267
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
P +E++A R+ IT+EKL + ++P+S++ P+ ++D+ F+++ G
Sbjct: 268 GRRPTEEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIESEG 320
>gi|282900289|ref|ZP_06308240.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281194794|gb|EFA69740.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 327
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 141/241 (58%), Gaps = 2/241 (0%)
Query: 241 ASVKKKLSEGFDR--NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
++VKK+ G + D +R +L LL ++E Q+Q ++ L + K L +
Sbjct: 2 STVKKESDNGKTKLTADMVRTYLREIGRVPLLNREQEIIYGKQVQQMMLLLEVKEALTKE 61
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
G EP+L EWA + S DLK ++ +G +++K+I ANLRLVV +AK+YQ R + DL
Sbjct: 62 LGYEPSLSEWAIYVNQSENDLKHKISTGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDL 121
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEG++GL + VEKF P G +F++YAYWW+RQ I +AI Q RTIRLP +I L+K+
Sbjct: 122 IQEGTLGLERGVEKFDPTMGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIK 181
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ +R Q+ SP ++A+ + + ++ + I R P+S+ V +QDT Q
Sbjct: 182 KVQRELAQKLGRSPSPTEIAKELELEPAQIREYLNIARQPISLDVRVGDNQDTELQEMLE 241
Query: 479 D 479
D
Sbjct: 242 D 242
>gi|434399420|ref|YP_007133424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428270517|gb|AFZ36458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 318
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 136/229 (59%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
ND +R +L LLT +EE ++Q I++EK K LQ + G EPT +WA A
Sbjct: 8 NDLVRSYLKEIGRVPLLTHEEEILYAKRVQQQIKVEKIKESLQDKLGEEPTESQWADAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
++ +L++ + +G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ITVEELRNIIQAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q+ +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQKGRTAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+LA + +T +++ + +R P+S+ V + DT D
Sbjct: 188 ISELAEELELTPKQVREYLEKSRQPISLDVRVGDNNDTELGDMLEDTGA 236
>gi|428315679|ref|YP_007113561.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428239359|gb|AFZ05145.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 319
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 134/228 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L +EK+ L + GR+PT EWA+A+G
Sbjct: 9 TDSVRAYLREIGRVPLLTHEQEILYGKQVQRSTALHQEKNILAEELGRDPTAAEWAQAVG 68
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS L+ + G ++ +++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 LSEAQLQRTIEQGERAKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 128
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q+ +
Sbjct: 129 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAAT 188
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA + +T +++ + R+PLS+ V +QDT D
Sbjct: 189 AAELASELELTPKQIREYLDRARLPLSLDLRVGDNQDTELGDLLEDTG 236
>gi|33862400|ref|NP_893960.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640513|emb|CAE20302.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 335
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 135/202 (66%), Gaps = 1/202 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+Q+L+ LE+ +S+L+ Q G + E AKA GLS LK +L SG
Sbjct: 40 LLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQSGRR 99
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E++++ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 100 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI + SRTIRLP +I +L+K+ + +R QE +P +LA V + E++
Sbjct: 160 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELAEFVELPEEEV 219
Query: 449 ERLIFITRMPLSMQQPVWADQD 470
+ L+ R P+S++ V D D
Sbjct: 220 KDLMCRARQPMSLEMKV-GDGD 240
>gi|170076992|ref|YP_001733630.1| group II sigma-70 type sigma factor [Synechococcus sp. PCC 7002]
gi|1769590|gb|AAB95227.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169884661|gb|ACA98374.1| Group II sigma-70 type sigma factor (RpoD family) [Synechococcus
sp. PCC 7002]
Length = 365
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 129/204 (63%), Gaps = 1/204 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL DEE +L ++ L E+ + +LQ Q GR PT EWA +GL + + L S L+ G
Sbjct: 66 LLKPDEEIQLAHSVKFLNDAEERRLELQEQLGRSPTNEEWASVLGLETVKQLNSALYKGR 125
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 126 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 185
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQ I + I +RTIRLP +I L+K+ +A+R Q +P + +LA+ + IT ++
Sbjct: 186 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRTLKQTLQRNPTEAELAQELDITADQ 245
Query: 448 LERLIFITRMPLSMQQPVWADQDT 471
L +L+ + R LS+ V +DT
Sbjct: 246 LHQLLQLRRQSLSLNHRVGKGEDT 269
>gi|428227195|ref|YP_007111292.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427987096|gb|AFY68240.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 365
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 129/203 (63%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL IQ L +E+ +++ + + GR P E A A+GL+ R L+ LH
Sbjct: 67 LLKPDEEVELARHIQQLNEIEELRAQFEEEHGRRPNKAELADALGLTERQLEQRLHRSQV 126
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 127 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 186
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I + I +RTIRLP +I L+K+ +A+R ++ P + +LA + IT E+L
Sbjct: 187 IRQGITRTIANDARTIRLPIHIVEKLNKLKKAQRELRRDLKRPPTEAELATVLEITEEQL 246
Query: 449 ERLIFITRMPLSMQQPVWADQDT 471
++L+ + R LS+ V ++DT
Sbjct: 247 QQLLQVRRQSLSLNVRVGREEDT 269
>gi|428204839|ref|YP_007100465.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428012958|gb|AFY91074.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 324
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 134/230 (58%), Gaps = 1/230 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R++L LLT ++E Q+Q I L+ K L Q GREP+L EWAKA G
Sbjct: 12 TDLIRIYLREIGRVPLLTHEQEILFGKQVQRSIALQLVKDSLTKQLGREPSLDEWAKASG 71
Query: 314 -LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
L L + G S++ K++ ANLRLVV +AK+Y R + L DL+QEG++GL + VEK
Sbjct: 72 KLDNTQLTQAIADGESAKRKIVEANLRLVVSIAKKYTKRNLELLDLIQEGTIGLHRGVEK 131
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F P G R ++YAYWW+RQ I +AI Q+SR IRLP ++ L+K+ + +R Q +P
Sbjct: 132 FDPTKGYRLSTYAYWWIRQAITRAIAQNSRNIRLPIHVTEKLNKIKKTQRQLSQHLKRTP 191
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+LA + +T ++ + + R P+S+++ V D+DT D A
Sbjct: 192 SISELAAALELTPNQVISYLEVARQPISLEKQVGEDRDTELGEMLQDPAA 241
>gi|376005594|ref|ZP_09783057.1| group 2 RNA polymerase sigma factor SigD (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375326028|emb|CCE18810.1| group 2 RNA polymerase sigma factor SigD (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 331
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 134/217 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q L++++++L Q G EPT +WA+ + L
Sbjct: 22 DSVRAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNL 81
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S L+ LH G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 82 SVAQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFD 141
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q+ +
Sbjct: 142 PTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATM 201
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+LA + +T +++ + +R+PLS+ V +QDT
Sbjct: 202 NELAAELDLTPKQIREYLEKSRLPLSLDLRVGDNQDT 238
>gi|334119483|ref|ZP_08493569.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333458271|gb|EGK86890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 319
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 133/228 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L +EK L + GR+PT EWA+A+G
Sbjct: 9 TDSVRAYLREIGRVPLLTHEQEILYGKQVQRSTALHQEKDILAEELGRDPTAAEWAQAVG 68
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS L+ + G ++ +++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 LSEAQLQRTIEQGERAKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 128
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q+ +
Sbjct: 129 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAAT 188
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA + +T +++ + R+PLS+ V +QDT D
Sbjct: 189 AAELASELELTPKQIREYLDRARLPLSLDLRVGDNQDTELGDLLEDTG 236
>gi|209524631|ref|ZP_03273179.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064274|ref|ZP_17053064.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209495089|gb|EDZ95396.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406713517|gb|EKD08685.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 331
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 134/217 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q L++++++L Q G EPT +WA+ + L
Sbjct: 22 DSVRAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNL 81
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S L+ LH G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 82 SVAQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFD 141
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q+ +
Sbjct: 142 PTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATM 201
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+LA + +T +++ + +R+PLS+ V +QDT
Sbjct: 202 NELAAELDLTPKQIREYLEKSRLPLSLDLRVGDNQDT 238
>gi|33864638|ref|NP_896197.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33632161|emb|CAE06617.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 332
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 135/205 (65%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+QDL+ +E +++L+S+ G +P+ + AKA GL+ LK +L G
Sbjct: 37 LLTHEQEITLGRQVQDLMDIEAMQTELESRDGDKPSRDKLAKASGLTPLQLKRKLQHGRR 96
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 97 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 156
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI + SRTIRLP +I +L+K+ + +R QE +P +LA+ V + + +
Sbjct: 157 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTITELAQYVELPEDDV 216
Query: 449 ERLIFITRMPLSMQQPVWADQDTTF 473
+ L+ R P+S++ V DT
Sbjct: 217 KDLMCRARQPVSLEMKVGDGDDTEL 241
>gi|359460652|ref|ZP_09249215.1| RNA polymerase sigma factor SigD [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 132/220 (60%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+QDLI+L+ + +L Q R+P EW+ A
Sbjct: 8 KDSVRSYLREIGRVPLLTHEEEVTFGKQVQDLIKLQAIRDELAEQLERQPNDAEWSVAAQ 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS +L+ LH G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 LSEAELQKALHEGEAAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ + +R Q+ +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKTQRQLSQKLGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+LA + +T +++ + R PLS+ V +QDT
Sbjct: 188 ISELATALDLTTKQVREYLERARQPLSLDVRVGDNQDTEL 227
>gi|126661338|ref|ZP_01732404.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126617371|gb|EAZ88174.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 328
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 141/242 (58%), Gaps = 1/242 (0%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A+V K + D +R +L LLT ++E Q+Q ++ L ++K +L + G
Sbjct: 4 ANVNTKTKQPMYSADMVRTYLHEIGRVPLLTHEQEIIYGKQVQTMMNLLEKKEELAQRVG 63
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+EP++ EWAK + + + L+ L G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 64 KEPSIQEWAKEVNIEEKALQKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 420
EGS+GL + VEKF P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +
Sbjct: 124 EGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKT 183
Query: 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
+R Q S ++A+ + I ++ + I R P+S+ V +QDT S L+
Sbjct: 184 QRELSQSLGRSATPAEIAQELEIEPSQIREFLSIARQPISLDVRVGDNQDTEL-SELLED 242
Query: 481 AG 482
G
Sbjct: 243 QG 244
>gi|409991559|ref|ZP_11274809.1| RNA polymerase sigma factor SigD [Arthrospira platensis str.
Paraca]
gi|409937568|gb|EKN78982.1| RNA polymerase sigma factor SigD [Arthrospira platensis str.
Paraca]
Length = 319
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 134/217 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q L++++++L Q G EPT +WA+ + L
Sbjct: 10 DSVRAYLREIGRVPLLTHEQEILYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNL 69
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S L+ LH G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 70 SVAQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFD 129
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q+ +
Sbjct: 130 PTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATM 189
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+LA + +T +++ + +R+PLS+ V +QDT
Sbjct: 190 NELAAELDLTPKQIREYLEKSRLPLSLDLRVGDNQDT 226
>gi|75908113|ref|YP_322409.1| RNA polymerase sigma factor SigD [Anabaena variabilis ATCC 29413]
gi|75701838|gb|ABA21514.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 332
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 134/226 (59%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LL+ +EE Q+Q L++ + +L +Q GREP++ EWAKA
Sbjct: 22 TDLVRTYLREIGRVPLLSHEEEIRYGKQVQRSTTLQEVREELATQLGREPSIEEWAKAAN 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
++ DL + G ++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 82 INSADLLGAIADGEVAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 141
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + +RTIRLP +I L+K+ +A+R Q +P
Sbjct: 142 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPT 201
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA + +T +++ + R+PLS+ + + DT D
Sbjct: 202 AGELANELELTPKQVREYLEKARLPLSLDLRLGDNYDTELGEMLED 247
>gi|113477482|ref|YP_723543.1| RNA polymerase sigma factor SigD [Trichodesmium erythraeum IMS101]
gi|110168530|gb|ABG53070.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 319
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 128/214 (59%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ +EE Q+Q L L++ L GREPTL+EWA+A LS +L+ + G
Sbjct: 24 LLSHEEEILYGKQVQRLTALQEFNQTLAEALGREPTLLEWAEAKELSKSELQRIIREGER 83
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF P G RF++YAYWW
Sbjct: 84 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 143
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI + RTIRLP +I L+K+ + +R Q+ S ++A +G+T +++
Sbjct: 144 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKVQRQLTQQLGRSATTGEIAEELGLTPKQI 203
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+ R+PLS+ V +QDT D
Sbjct: 204 RECLERARLPLSLDLRVGDNQDTELGDLLEDTGA 237
>gi|186683480|ref|YP_001866676.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186465932|gb|ACC81733.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 130/225 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K KL Q R+PT EW + I +
Sbjct: 23 DTVRAYLREIGRIPLLTHEQEINFAKQVQKMMALLATKEKLAIQLKRQPTQKEWIENINI 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ L +LH G +++K+I ANLRLVV +AK+YQ + DL+QEGS+GL + VEKF
Sbjct: 83 GEKSLLQQLHQGQKAKQKMIQANLRLVVSIAKKYQRHNLDFLDLIQEGSLGLERGVEKFD 142
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++Y YWW+RQ I +AI + RTIRLP +I L+K+ +R Q+ +P
Sbjct: 143 PTKGYKFSTYGYWWIRQAITRAIAEQGRTIRLPIHITEKLNKIKRIQRELTQKLGRTPTA 202
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
D+A + + +++ + + R P+S++ V +D+D Q D
Sbjct: 203 VDIAEELSLDPKQIRDYLLLARQPVSLELRVGSDKDIELQDMLED 247
>gi|427421683|ref|ZP_18911866.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425757560|gb|EKU98414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 318
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 139/226 (61%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R +L LLT ++E Q+Q + L+ ++KL++ REP+ +EWA+A G
Sbjct: 8 SDLVRTYLKEIGRVPLLTHEQEVVYGKQVQRFVALQAYRTKLEASLEREPSKLEWAEAAG 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S +L + +G+ ++ +++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISVDELTQAMDAGDLAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q+ +
Sbjct: 128 DPLKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQKLGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA V +T +++ + +R PLS+ + +QDT D
Sbjct: 188 VAELAEEVKLTPKQVRDYLEKSRSPLSLDLRIGDNQDTNLGDLLED 233
>gi|428211704|ref|YP_007084848.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428000085|gb|AFY80928.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 318
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 136/229 (59%), Gaps = 1/229 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E L Q+Q L L + K L QFG EPT +EW++A G
Sbjct: 8 TDLVRTYLREIGRVPLLTHEQEIVLGKQVQHLSLLHEMKETLTEQFGHEPTDVEWSQAAG 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS +L+ + G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 LSLVELQQAIEQGETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A R Q+ +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKASRELSQQLGRTAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+LA + ++ +++ + R PLS+ V + DT S L+ G
Sbjct: 188 IGELAVELELSPKQIREYMERARHPLSLDLRVGDNHDTEL-SELLEDTG 235
>gi|307151291|ref|YP_003886675.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306981519|gb|ADN13400.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 318
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 135/228 (59%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LLT +EE L ++Q + L++ K L REP EWA+A
Sbjct: 8 TDPVRAYLREIGRVPLLTHEEEIVLAKRVQRSMALQEIKDTLTKNLSREPLEHEWAEAAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S +L+ + +G +++EK++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEELRRTMAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q+ +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQKQGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA+ + +T ++ + R PLS+ V +QDT D
Sbjct: 188 ISELAQELELTPRQVREYLERARQPLSLDLRVGDNQDTELGELLEDTG 235
>gi|119492598|ref|ZP_01623816.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119453067|gb|EAW34237.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 333
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 132/225 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE Q+Q +++ +EK KL + EP+ EWA + L
Sbjct: 24 DTVRTYLHEIGRVPLLTQEEEIHYGKQVQQMMKQLEEKDKLTKKLEHEPSKTEWANEVEL 83
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ +L L G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 84 TEDELDRILDCGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 143
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWWVRQ I +AI Q+ RTIRLP +I L+K+ +R +Q+ +P
Sbjct: 144 PMRGYKFSTYAYWWVRQAITRAIAQNGRTIRLPIHITEKLNKIKRVQRDLVQKYGRNPTP 203
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A + + ++ + +R P+S+ V +QDT Q D
Sbjct: 204 TEIAEALELEPSQIREYLLASRHPISLDLRVGDNQDTELQELLED 248
>gi|443329714|ref|YP_007378785.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682340|gb|AFZ61104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 328
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 137/226 (60%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE Q+Q +I L+ +K L+ Q EP+ E A+ + L
Sbjct: 18 DIVRNYLQDIVRVPLLTHEEEISSSKQVQQMITLQNKKETLKKQLNHEPSQKELAQYVQL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++K G +++K+I ANLRLVV +AK+YQGR + DL+QEGS+GL + VEKF
Sbjct: 78 SEMEVKEIFQKGVQAKQKMIAANLRLVVSIAKKYQGRNVEFMDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
G +F++YAYWW+ Q + +AI Q SRTIRLP ++ L+K+ + +R Q+ N SP
Sbjct: 138 STRGYKFSTYAYWWISQGMTRAISQQSRTIRLPIHLTEKLNKLKKVQRELSQKLNRSPSM 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
++A ++ + ++ L+ I+R P+S+ + V ++DT Q +A
Sbjct: 198 FEIAEKMQLNPAQIRELLMISRQPVSLDKQVGDNEDTELQELLTEA 243
>gi|224000633|ref|XP_002289989.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
gi|220975197|gb|EED93526.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 134/201 (66%), Gaps = 2/201 (0%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLTA EE+ L +++ +++ E L + GR P++ EWA A S R + + +
Sbjct: 3 ELLTAKEEYSLGMKVKFMVKCEAVHEGLSVEMGRSPSIAEWAAAC--SPRLFREMMLTAK 60
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++++++ N+RLVV +A++Y G G+++ DL+QEGS+GL ++ EKF P+ G +F++YA W
Sbjct: 61 EAKQRMVQCNMRLVVSIARRYHGVGVNVQDLVQEGSLGLARAAEKFDPKKGFKFSTYASW 120
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W++Q + ++I HSRTIRLP +++ LL+KV A+++ QE +P E++A + +T+EK
Sbjct: 121 WIQQAVFRSIAYHSRTIRLPVHVHNLLNKVRRARQVLQQELGRTPTNEEMAVEMDMTIEK 180
Query: 448 LERLIFITRMPLSMQQPVWAD 468
++I TR +S+++P + +
Sbjct: 181 YNKMIRTTRNAISLERPKYKN 201
>gi|428217032|ref|YP_007101497.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427988814|gb|AFY69069.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 346
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 145/260 (55%)
Query: 220 SKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELI 279
S+K+ + T ++ + S K ++ D +R +L LLT++EE
Sbjct: 2 SRKKSIQAKAGVRSATGSATERSADKGVARPGVSADMVRTYLHEIGKIPLLTSEEEIIFG 61
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLR 339
++Q L+RL + L Q R+PT EWA GL+ +L+ + G S+ K+I ANLR
Sbjct: 62 KRVQQLMRLSELYEDLAEQLDRQPTQAEWADKAGLNIEELEQIVRDGTRSKRKMIEANLR 121
Query: 340 LVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQ 399
LVV VAK+YQ R + L DL+QEG++GL ++V+KF P G +F++YAYWW+RQ I +AI Q
Sbjct: 122 LVVSVAKKYQKRNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWWIRQAITRAIAQ 181
Query: 400 HSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPL 459
+RTIRLP +I L+K+ +A+R Q ++A + + E++ + + R P+
Sbjct: 182 QARTIRLPVHITEKLNKIKKAQRQLSQSLGRVATAAEIADALKLKPEQVREFLSMARQPV 241
Query: 460 SMQQPVWADQDTTFQSTFLD 479
S+ + +QDT D
Sbjct: 242 SLDLRIGDNQDTELAELLED 261
>gi|443663597|ref|ZP_21133167.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159027100|emb|CAO89285.1| rpoD [Microcystis aeruginosa PCC 7806]
gi|443331874|gb|ELS46514.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 328
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 135/228 (59%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQHLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +R Q+ S
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++A + + ++ + + R P+S+ V +QDT S L+ +G
Sbjct: 198 AEIALELDLEPAQIREYLSMARQPISLDVRVGDNQDTEL-SELLEDSG 244
>gi|113954287|ref|YP_730230.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881638|gb|ABI46596.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 318
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 133/206 (64%), Gaps = 1/206 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTL-IEWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++L+ Q G E EWAKA G+S LK +L +G
Sbjct: 22 LLSHQQEITLGRQVQELMDLEALEAELKDQRGGEEVARDEWAKAAGMSAAQLKRKLQAGR 81
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 82 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 141
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQ I +AI + SRTIRLP +I +L+K+ + +R QE +P +LA V + E+
Sbjct: 142 WIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEEE 201
Query: 448 LERLIFITRMPLSMQQPVWADQDTTF 473
++ L+ R P+S++ V DT
Sbjct: 202 VKDLMCRARQPVSLEMKVGDGDDTEL 227
>gi|428220179|ref|YP_007104349.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427993519|gb|AFY72214.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 334
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 133/234 (56%)
Query: 246 KLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTL 305
K +G D +R +L LLT +EE Q+Q L+ + L QF R PT
Sbjct: 15 KAKQGTLSADMVRTYLHEIGKIPLLTNEEEIIYGKQVQHLMGYITTQETLSEQFDRLPTQ 74
Query: 306 IEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365
EWA+A+GL L L G ++ K+I ANLRLVV VAK+YQ R + L DL+QEG++G
Sbjct: 75 EEWAQAVGLEPNALNDALKQGTRAKRKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLG 134
Query: 366 LMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYI 425
L ++V+KF P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +A+R
Sbjct: 135 LERAVDKFDPTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPVHITEKLNKIKKAQRQLA 194
Query: 426 QEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
Q+ ++A + I E++ + + R P+S+ + +QDT D
Sbjct: 195 QDLGRVATAAEVAETLEIKPEQVRECLSLARQPISLDLRIGDNQDTELADLLED 248
>gi|87302644|ref|ZP_01085461.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
gi|87282988|gb|EAQ74945.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
Length = 469
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 141/232 (60%), Gaps = 1/232 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ + + G P EW
Sbjct: 153 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAGQFEQDNGHYPDNKEW 212
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 213 AVLVDMPPVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 272
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + ++ QE
Sbjct: 273 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEF 332
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P +E++A + +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 333 GRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 383
>gi|425440995|ref|ZP_18821285.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
gi|389718430|emb|CCH97613.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
Length = 328
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 135/228 (59%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +R Q+ S
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++A + + ++ + + R P+S+ V +QDT S L+ +G
Sbjct: 198 AEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTEL-SELLEDSG 244
>gi|307152078|ref|YP_003887462.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982306|gb|ADN14187.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 328
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 137/228 (60%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L ++K +L Q REP+L EWA + +
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLEKKDELAIQLEREPSLTEWANHVQM 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L + G ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ + +R Q+ S
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQQLGRSATP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++A+ + + +++ + ++R P+S+ V +QDT S L+ G
Sbjct: 198 SEIAKALDLEPDQIREFLSMSRQPISLDVRVGDNQDTEL-SELLEDEG 244
>gi|428320421|ref|YP_007118303.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244101|gb|AFZ09887.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 334
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 136/232 (58%)
Query: 248 SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE 307
S + D +R +L LLT +EE Q+Q +++L + K L ++ R+ T E
Sbjct: 18 SRPYSSTDTVRAYLHEIGRVPLLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQE 77
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA + L+ +L LH G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL
Sbjct: 78 WAAEMELTEPELSRILHIGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLE 137
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 427
+ VEKF P G +F++YAYWW+RQ I +AI QH+RTIRLP +I L+K+ + +R Q+
Sbjct: 138 RGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELTQQ 197
Query: 428 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
SP ++A + + ++ + + R P+S+ V +QDT Q D
Sbjct: 198 LGRSPSPGEIATALELHPSQIREYLLMARHPVSLDLRVGDNQDTELQELLED 249
>gi|425469578|ref|ZP_18848501.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
gi|389880547|emb|CCI38706.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
Length = 328
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 135/228 (59%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +R Q+ S
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++A + + ++ + + R P+S+ V +QDT S L+ +G
Sbjct: 198 AEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTEL-SELLEDSG 244
>gi|425447372|ref|ZP_18827361.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
gi|389732078|emb|CCI03931.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
Length = 328
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 135/228 (59%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +R Q+ S
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++A + + ++ + + R P+S+ V +QDT S L+ +G
Sbjct: 198 AEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTEL-SELLEDSG 244
>gi|88809912|ref|ZP_01125417.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786102|gb|EAR17264.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 355
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 133/206 (64%), Gaps = 1/206 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI-EWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++LQ + G E L E AKA GLS LK +L +G
Sbjct: 59 LLSHQQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAGLSAVQLKRKLQAGR 118
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 119 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 178
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQ I +AI + SRTIRLP +I +L+K+ + +R QE +P +LA V + ++
Sbjct: 179 WIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEDE 238
Query: 448 LERLIFITRMPLSMQQPVWADQDTTF 473
++ L+ R P+S++ V DT
Sbjct: 239 VKELMCRARQPVSLEMKVGDGDDTEL 264
>gi|166364164|ref|YP_001656437.1| RNA polymerase sigma factor [Microcystis aeruginosa NIES-843]
gi|166086537|dbj|BAG01245.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 328
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 135/228 (59%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLETKEALSKQLGREPDRLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +R Q+ S
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++A + + ++ + + R P+S+ V +QDT S L+ +G
Sbjct: 198 AEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTEL-SELLEDSG 244
>gi|17158744|ref|NP_478255.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
gi|17134693|dbj|BAB77251.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
Length = 323
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 135/220 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE Q+Q ++ L+K+K L+ Q EP+ E AK + L
Sbjct: 13 DIVRNYLQDIVRVPLLTHEEEIVYSKQVQQMMVLQKKKETLKKQLNHEPSQKELAKYVQL 72
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++K G +++K++ ANLRLVV +AK+YQ R + L DL+QEGS+GL + VEKF
Sbjct: 73 SEIEVKDIFQQGTQAKQKMMVANLRLVVAIAKKYQRRNLELMDLIQEGSLGLERGVEKFD 132
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+ Q + +AI Q SRTIRLP +I L+K + +R Q+ SP
Sbjct: 133 PTRGYKFSTYAYWWISQAMTRAISQQSRTIRLPIHITEKLNKFKKVQRELSQKLKRSPSA 192
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 474
+++A ++ + ++ L+ I+R P S+ + V ++DT Q
Sbjct: 193 DEIAEKMKLNPAQIRELLMISRQPASLDKQVGDNEDTELQ 232
>gi|332711345|ref|ZP_08431277.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332349894|gb|EGJ29502.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651122|gb|AEE81162.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 319
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 133/230 (57%)
Query: 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKA 311
D D +R +L LLT ++E +++ L L++ K L Q GREPT EWA A
Sbjct: 6 DSTDLVRTYLKEIGRVPLLTHEQEISYGKKVKQLTTLKEVKESLVQQLGREPTFSEWATA 65
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
L+ LKS + G S++ K++ ANLRLVV VAK+Y R + L DL+QEG++GL + VE
Sbjct: 66 SCLTDSQLKSSIAVGESAKRKMVEANLRLVVAVAKKYIKRNLELLDLIQEGTIGLQRGVE 125
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHS 431
KF P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q+ +
Sbjct: 126 KFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRT 185
Query: 432 PDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA + +T ++L R PLS++ V ++DT D
Sbjct: 186 ATISELAIELNLTPDQLREYFEQARQPLSLELRVGDNKDTELVELLEDTG 235
>gi|172035560|ref|YP_001802061.1| RNA polymerase sigma factor [Cyanothece sp. ATCC 51142]
gi|354554809|ref|ZP_08974112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697014|gb|ACB49995.1| group 2 sigma-70 RNA polymerase sigma factor B [Cyanothece sp. ATCC
51142]
gi|353552963|gb|EHC22356.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 328
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 138/242 (57%), Gaps = 1/242 (0%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A+V K + D +R +L LLT ++E Q+Q ++ L + K +L G
Sbjct: 4 ANVNTKTKQPTYSADMVRTYLHEIGRVPLLTHEQEIIYGKQVQKMMSLLETKEELAQSLG 63
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+EP+L EWAK + L + L L G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 64 KEPSLQEWAKEVNLEEKALTKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 420
EGS+GL + VEKF P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +
Sbjct: 124 EGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKT 183
Query: 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
+R Q S ++A+ + I ++ + I R P+S+ V +QDT S L+
Sbjct: 184 QRELSQTLGRSATPAEIAQELEIEPSQIREFLSIARQPISLDVRVGDNQDTEL-SELLED 242
Query: 481 AG 482
G
Sbjct: 243 QG 244
>gi|422302967|ref|ZP_16390325.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|425467050|ref|ZP_18846334.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
gi|389792142|emb|CCI12123.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|389830277|emb|CCI27891.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
Length = 328
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 135/228 (59%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +R Q+ S
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++A + + ++ + + R P+S+ V +QDT S L+ +G
Sbjct: 198 AEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTEL-SELLEDSG 244
>gi|425435006|ref|ZP_18815466.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|425452052|ref|ZP_18831870.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|425458612|ref|ZP_18838100.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440755453|ref|ZP_20934655.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675298|emb|CCH95580.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|389766335|emb|CCI08019.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|389826317|emb|CCI23267.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440175659|gb|ELP55028.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 328
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 135/228 (59%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +R Q+ S
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++A + + ++ + + R P+S+ V +QDT S L+ +G
Sbjct: 198 AEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTEL-SELLEDSG 244
>gi|334119649|ref|ZP_08493734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333457811|gb|EGK86432.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 357
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 145/258 (56%), Gaps = 12/258 (4%)
Query: 224 KVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQ 283
++ +P VT YN+ A +DP+ LLTA EE EL ++Q
Sbjct: 26 EIDRPTVTPSSAYNNWSA------------DDPVGALFKEMARYPLLTATEEVELARRVQ 73
Query: 284 DLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVH 343
+L+ L++ + +LQ + R PT E A A+G+S L+ H S++ K+I++NLRLVV
Sbjct: 74 ELVALDEVEQRLQQELDRVPTKAELAAALGISETQLQQLRHQCQSAKRKMISSNLRLVVS 133
Query: 344 VAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRT 403
+AK+Y RG+ DL+QEG++GL ++ EKF P+ G +F++YAYWW+RQ I + I RT
Sbjct: 134 IAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPEKGYKFSTYAYWWIRQGITRTIANQGRT 193
Query: 404 IRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQ 463
IRLP +I L+K+ + R + +P + +LAR + +T E+L L + R LS+
Sbjct: 194 IRLPVHIVEQLNKLKKVYRDLRRSLQRNPTETELAREMQVTCEQLRYLQQVRRQSLSLNH 253
Query: 464 PVWADQDTTFQSTFLDAA 481
+ +++ + D A
Sbjct: 254 RIGSEESSELLDVLEDNA 271
>gi|67924587|ref|ZP_00518002.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853561|gb|EAM48905.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 328
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 139/242 (57%), Gaps = 1/242 (0%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A+V K + D +R +L LLT ++E Q+Q ++ ++K +L + G
Sbjct: 4 ANVNTKTKQPMYSADMVRTYLHEIGRVPLLTHEQEIIYGKQVQKMMNFLEKKEELADKLG 63
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+EPT+ EW+K + + + L L G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 64 KEPTVKEWSKELEIEQKALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 420
EGS+GL + VEKF P G +F++YAYWW+RQ I +AI Q SRTIRLP +I L+K+ +
Sbjct: 124 EGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKIKKT 183
Query: 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
+R Q S ++A+ + I ++ + I R P+S+ V +QDT S L+
Sbjct: 184 QRELSQTLGRSATPSEIAQELEIEPSQIREFLSIARQPISLDVRVGDNQDTEL-SELLED 242
Query: 481 AG 482
G
Sbjct: 243 QG 244
>gi|443311966|ref|ZP_21041588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778041|gb|ELR88312.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 327
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 132/225 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q REPT EWA + +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIIYGKQVQQMMSLLEAKEALAKQLHREPTSDEWATQVDI 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ +L + G +++K+I ANLRLVV +AK+YQ R + DL+QEG+MGL + VEKF
Sbjct: 78 AAAELPETIKRGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ + +R Q+ SP+
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELAQKLGRSPNA 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A + + ++ + + R P+S+ V +QDT Q D
Sbjct: 198 NEIAIALELEPAQIREYLNLARQPVSLDIRVGDNQDTELQDLLED 242
>gi|334118426|ref|ZP_08492515.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459433|gb|EGK88046.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 334
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 136/232 (58%)
Query: 248 SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE 307
S + D +R +L LLT +EE Q+Q +++L + K L ++ R+ T E
Sbjct: 18 SRPYSSTDTVRTYLHEIGRVPLLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQE 77
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA + L+ +L LH G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL
Sbjct: 78 WAAEMELTEPELSRILHIGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLE 137
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 427
+ VEKF P G +F++YAYWW+RQ I +AI QH+RTIRLP +I L+K+ + +R Q+
Sbjct: 138 RGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELTQQ 197
Query: 428 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
SP ++A + + ++ + + R P+S+ V +QDT Q D
Sbjct: 198 LGRSPSPGEIAAALELHPSQIREYLLMARHPVSLDLRVGDNQDTELQELLED 249
>gi|425455107|ref|ZP_18834832.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
gi|389804051|emb|CCI17083.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
Length = 328
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 135/228 (59%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +R Q+ S
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++A + + ++ + + R P+S+ V +QDT S L+ +G
Sbjct: 198 AEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTEL-SELLEDSG 244
>gi|88808921|ref|ZP_01124430.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786863|gb|EAR18021.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 322
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 133/206 (64%), Gaps = 1/206 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI-EWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++LQ + G E L E AKA GLS LK +L +G
Sbjct: 25 LLSHQQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAGLSAVQLKRKLQAGR 84
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 144
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQ I +AI + SRTIRLP +I +L+K+ + +R QE +P +LA V + ++
Sbjct: 145 WIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEDE 204
Query: 448 LERLIFITRMPLSMQQPVWADQDTTF 473
++ L+ R P+S++ V DT
Sbjct: 205 VKELMCRARQPVSLEMKVGDGDDTEL 230
>gi|260436019|ref|ZP_05789989.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
gi|260413893|gb|EEX07189.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
Length = 335
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 133/205 (64%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q+L+ LE +++L+S+ G +P+ AKA GLS LK +L G
Sbjct: 40 LLTHEQEITLGRQVQELMDLESLEAELESKAGEKPSRDVLAKASGLSSMQLKRKLQHGRR 99
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI + SRTIRLP +I +L+K+ + +R QE +P +LA V + + +
Sbjct: 160 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAEFVELPEDDV 219
Query: 449 ERLIFITRMPLSMQQPVWADQDTTF 473
+ L+ R P+S++ V DT
Sbjct: 220 KDLMCRARQPVSLEMKVGDGDDTEL 244
>gi|427706077|ref|YP_007048454.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358582|gb|AFY41304.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 327
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 131/225 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L + REP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVFGKQVQQMMTLVEAKEALAKKLHREPSLPEWANHVKQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S D+K + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 SETDVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q RTIRLP +I L+K+ + +R Q SP
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPTP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A+ + + ++ + + R P+S+ V +QDT Q D
Sbjct: 198 AEIAKELELEPAQIREYLNMARQPVSLDVRVGDNQDTELQEMLED 242
>gi|186685842|ref|YP_001869038.1| RNA polymerase sigma factor SigD [Nostoc punctiforme PCC 73102]
gi|186468294|gb|ACC84095.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 133/226 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q GR+PTL EWAKA
Sbjct: 22 TDLVRTYLREIGRVPLLTHEEEIFYGKQVQRSCTLHESRESLATQLGRQPTLEEWAKATK 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L +L + G ++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 82 LEPVELNEAIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 141
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + +RTIRLP +I L+K+ +A+R Q+ +P
Sbjct: 142 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPT 201
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA+ + +T +++ + R+PLS+ + + DT D
Sbjct: 202 AGELAQELELTPKQVREYLEKARLPLSLDLRLGDNYDTELGEMLED 247
>gi|428772058|ref|YP_007163846.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686337|gb|AFZ46197.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 318
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 133/227 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L LLT +EE IQ+L+ LEK+K L + EPTL EWAKA +
Sbjct: 9 DTIRVYLKEIGRIPLLTQEEEIIYAKHIQELVALEKKKETLAKKLEHEPTLGEWAKAAKI 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++L+ ++ G ++ +++ ANLRLVV +AK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 SEKNLQIKITQGEKAKRRMVEANLRLVVSIAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G RF++YAYWW+RQ I +AI + SR IRLP +I L+K+ + +R +E
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRAIRLPLHITEKLNKIRQTQRKLSEEKGRPATI 188
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA + ++ E++ + R PLS+ V + DT D
Sbjct: 189 AELAEALELSTEQVREYLGKARQPLSLDLKVGDNNDTELGELLEDKG 235
>gi|434396918|ref|YP_007130922.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428268015|gb|AFZ33956.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 368
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 136/213 (63%), Gaps = 1/213 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL +EE EL ++ +++ E+ + +L+ Q R+PT EW KA+ L S R L++ L+ G
Sbjct: 69 LLKPEEEVELANCVKVMVQAEEIRQQLKEQLNRQPTKEEWTKALQLESIRQLENRLYRGR 128
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 129 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYW 188
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQ I + I +RTIRLP +I L+K+ +A+R Q+ +P++++LA + +++ +
Sbjct: 189 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRNLKQQLQRNPNEQELANELNVSLSQ 248
Query: 448 LERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
L +L+ + R LS+ V +DT D+
Sbjct: 249 LHQLLELRRQSLSLNHRVGKAEDTELVDLLEDS 281
>gi|449017038|dbj|BAM80440.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 721
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 137/224 (61%), Gaps = 4/224 (1%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G ++D +R +L+ +LL EE EL Q+ L+ LE+ + + Q G+ PT +EWA
Sbjct: 401 GERKDDTIRSYLYEIGRYQLLQPGEEVELSRQVCVLMDLERFQKSFREQHGKSPTELEWA 460
Query: 310 KAIGLS--CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
+ G L+ + G S++E+++ ANLRLVV +AK+Y RG++L DL+QEGS+GL+
Sbjct: 461 RGCGYGEDVEALRKHIRDGRSAKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLI 520
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLE-AKRLYIQ 426
+ VEKF G RF++YA WW+RQ+I +AI SR+IRLP +++ +S + + K L+ Q
Sbjct: 521 RGVEKFDAGRGFRFSTYATWWIRQSITRAISDSSRSIRLPVHVHDTISMIRKHTKALHTQ 580
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
G P ++++ VGI + K ++ ++ +S++ P+ D
Sbjct: 581 LG-RPPREDEICESVGIDIAKYRLIMECSQNIVSLETPMHGTDD 623
>gi|124022691|ref|YP_001016998.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962977|gb|ABM77733.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 320
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 135/202 (66%), Gaps = 1/202 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+Q+L+ LE+ +S+L+ + G + E AKA GLS LK +L SG
Sbjct: 25 LLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGLSELQLKKKLQSGRR 84
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E++++ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 85 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 144
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI + SRTIRLP +I +L+K+ + +R QE +P +LA V + E++
Sbjct: 145 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELAEFVELPEEEV 204
Query: 449 ERLIFITRMPLSMQQPVWADQD 470
+ L+ R P+S++ V D D
Sbjct: 205 KDLMCRARQPMSLEMKV-GDGD 225
>gi|428770639|ref|YP_007162429.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428684918|gb|AFZ54385.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 318
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 135/227 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L LLT +EE L QIQ+L+ LEK++ L+ + REP+ EWA+A +
Sbjct: 9 DTIRVYLKEIGRIPLLTKEEEIVLAKQIQELVALEKKRETLKKKLEREPSKKEWAEAAKI 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++L ++ G ++ K++ ANLRLVV +AK+Y + L DL+QEG++G+ + VEKF
Sbjct: 69 SEKNLDIKISRGEKAKRKMVEANLRLVVSIAKKYLKHNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P+ G RF++YAYWW+RQ I +AI + SR IRLP +I L+K+ + +R +E
Sbjct: 129 PKKGYRFSTYAYWWIRQAITRAIAEKSRAIRLPLHITEKLNKIRQTQRKLSEEKGRPATI 188
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+L+ + +T E++ + R PLS+ V + DT D
Sbjct: 189 AELSEALELTTEQVRDYLGKARQPLSLDLKVGDNNDTELGELLEDKG 235
>gi|172035791|ref|YP_001802292.1| RNA polymerase sigma factor RpoD [Cyanothece sp. ATCC 51142]
gi|354555027|ref|ZP_08974330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697245|gb|ACB50226.1| group 1 sigma-70 RNA polymerase sigma factor A [Cyanothece sp. ATCC
51142]
gi|353553181|gb|EHC22574.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 416
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 160/302 (52%), Gaps = 50/302 (16%)
Query: 230 VTNHETYNSRKASVKKKLSEGFDR---NDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286
+ ET +RK S ++ + D +R++L +LL A+EE EL +I DL+
Sbjct: 32 IAETETKKTRKISASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLL 91
Query: 287 RLEKEKSKLQSQFGREPTLIEWAKAI-----------GLSCRD----------------- 318
+LE+ + L + +EPT +W K I S +D
Sbjct: 92 QLERIREALWEELDQEPTDEQWGKRIFQWENIEQMLRAQSAKDKDPKWSEVTTMLQQADI 151
Query: 319 ------------------LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
K L+ G +++K++++NLRLVV +AK+Y RG+S DL+Q
Sbjct: 152 ISDLEKTWKLESKAYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQ 211
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 420
EGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ +
Sbjct: 212 EGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKT 271
Query: 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
+L QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F++A
Sbjct: 272 TKLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEA 330
Query: 481 AG 482
G
Sbjct: 331 DG 332
>gi|218439771|ref|YP_002378100.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7424]
gi|218172499|gb|ACK71232.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 328
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 136/228 (59%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L ++K +L + G+EP L EWA + +
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLEKKDQLAIELGKEPNLTEWANQVQM 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L + G ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ + +R Q+ S
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQQLGRSATP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++A+ + + ++ + ++R P+S+ V +QDT S L+ G
Sbjct: 198 AEIAKALDLEPAQIREFLSMSRQPISLDVRVGDNQDTEL-SELLEDEG 244
>gi|158337052|ref|YP_001518227.1| RNA polymerase sigma factor SigD [Acaryochloris marina MBIC11017]
gi|158307293|gb|ABW28910.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 131/220 (59%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q LI+L+ + +L Q R+P EW+ A
Sbjct: 8 KDSVRSYLREIGRVPLLTHEEEVTFGKQVQHLIKLQTIRDELAEQLERQPNDAEWSAAAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS +L+ LH G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 LSEAELQKALHEGEAAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ + +R Q+ +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKTQRQLSQKLGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+LA + +T +++ + R PLS+ V +QDT
Sbjct: 188 ISELATSLDLTTKQVREYLERARQPLSLDVRVGDNQDTEL 227
>gi|17231302|ref|NP_487850.1| RNA polymerase sigma factor SigD [Nostoc sp. PCC 7120]
gi|8489797|gb|AAF75755.1|AF262216_2 group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
gi|17132944|dbj|BAB75509.1| group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
Length = 332
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 134/226 (59%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LL+ +EE Q+Q L++ + +L +Q GREP++ EWAKA
Sbjct: 22 TDLVRTYLREIGRVPLLSHEEEIRYGKQVQRSTTLQEMREELATQSGREPSVEEWAKAAN 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L+ DL + G ++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 82 LNPADLLEAIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 141
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + +RTIRLP +I L+K+ +A+R Q +P
Sbjct: 142 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPT 201
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA + +T +++ + R+PLS+ + + DT D
Sbjct: 202 AGELANELELTPKQVREYLEKARLPLSLDLRLGDNYDTELGEMLED 247
>gi|434402958|ref|YP_007145843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428257213|gb|AFZ23163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 327
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 132/225 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L + REP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVFGKQVQHMMTLLEAKEALAKKLRREPSLPEWAADVNQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S D+K + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 SETDVKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q RTIRLP +I L+K+ + +R Q+ SP
Sbjct: 138 PTRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A+ + + ++ + + R P+S+ V +QDT Q D
Sbjct: 198 VEIAKELELEPAQIREYLNMARQPVSLDVRVGDNQDTELQDMLED 242
>gi|119511025|ref|ZP_01630145.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119464276|gb|EAW45193.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 332
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 134/226 (59%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE + Q+Q L + + L +Q GREP+L EWA A
Sbjct: 22 TDLVRTYLREIGRVPLLTHEEEIQYGKQVQFSRILHEVRDSLINQIGREPSLEEWALAAN 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L +L + G +++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 82 LEVAELNDAIADGETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 141
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + +RTIRLP +I L+K+ +A+R Q+ +P
Sbjct: 142 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQQLGRAPS 201
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA+ + +T +++ + R+PLS+ + + DT D
Sbjct: 202 AAELAQELDLTPKQVREYLERARLPLSLDLRLGDNYDTELGEMLED 247
>gi|291565943|dbj|BAI88215.1| group 2 RNA polymerase sigma factor SigD [Arthrospira platensis
NIES-39]
Length = 331
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 133/217 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q L++++++L Q EPT +WA+ + L
Sbjct: 22 DSVRAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLAYEPTEAQWAELVNL 81
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S L+ LH G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 82 SVAQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFD 141
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q+ +
Sbjct: 142 PTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATM 201
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+LA + +T +++ + +R+PLS+ V +QDT
Sbjct: 202 NELAAELDLTPKQIREYLEKSRLPLSLDLRVGDNQDT 238
>gi|428203741|ref|YP_007082330.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981173|gb|AFY78773.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 328
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 136/228 (59%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L ++K +L S+ G EP+L EWA + L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIVYGKQVQRMMTLLEKKEELASKLGHEPSLTEWANYVQL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+L + GN ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 GEDELNRAIAQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ + +R Q+ S
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELAQQLGRSATP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++A+ + + ++ + + R P+S+ V +QDT S L+ G
Sbjct: 198 GEIAQALDLEPAQIREYLSMARQPVSLDVRVGDNQDTEL-SDLLEDEG 244
>gi|434391486|ref|YP_007126433.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428263327|gb|AFZ29273.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 384
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 132/205 (64%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL +EE EL +++ ++ E+ + +LQ++ R+P E A +G+S R L+ L+ G
Sbjct: 86 LLKPEEEVELARRVKFIVEFEEIQQRLQAEIKRQPNKAEVATLLGMSERQLEHRLYQGRV 145
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 146 AKRKMIRSNLRLVVSIAKRYLNRGLPFLDLIQEGAMGLNRAAEKFDPDKGYKFSTYAYWW 205
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIRLP +I L+K+ +A+R Q+ +P + +LA+ + I+ E L
Sbjct: 206 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQQLQRNPSEVELAQFLEISAEHL 265
Query: 449 ERLIFITRMPLSMQQPVWADQDTTF 473
+L+ + R LS+ V ++DT
Sbjct: 266 RQLLQLRRKSLSLNHRVGKEEDTEL 290
>gi|159904297|ref|YP_001551641.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159889473|gb|ABX09687.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 335
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 135/220 (61%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
ND +R +L LL+ D+E L +Q+L+ LE + QS G++P L E A A G
Sbjct: 25 NDLIRSYLRDIGRVPLLSNDQEITLGRHVQELMALENLEKDWQSTHGQKPNLDELASAAG 84
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L+ LK + G ++E+++ ANLRLVV +AK+Y R + L DL+QEG++GL++ VEKF
Sbjct: 85 LTVGALKKKFRLGERAKERMVAANLRLVVSIAKKYTKRNMELLDLIQEGTIGLVRGVEKF 144
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G +F++YAYWW+RQ I +AI + SR IRLP +I +L+K+ + +R Q+ + +P
Sbjct: 145 DPARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRDLSQQLSRTPS 204
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+LA + ++ E+++ L+ P+S++ V DT
Sbjct: 205 VAELAEYIDVSEEEVKDLMLKASQPVSLEMKVGDKDDTVL 244
>gi|390440883|ref|ZP_10229079.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
gi|389835810|emb|CCI33205.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
Length = 328
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 135/228 (59%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP ++WA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLDWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +R Q+ S
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++A + + ++ + + R P+S+ V +QDT S L+ +G
Sbjct: 198 AEIALELELEPAQIREYLSMARQPISLDVRVGDNQDTEL-SELLEDSG 244
>gi|416404726|ref|ZP_11687748.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357261487|gb|EHJ10751.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 328
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 139/242 (57%), Gaps = 1/242 (0%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A+V K + D +R +L LLT ++E Q+Q ++ ++K +L + G
Sbjct: 4 ANVNTKTKQPMYSADMVRTYLHEIGRVPLLTHEQEIIYGKQVQKMMNFLEKKEELADKLG 63
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+EPT+ EW+K + + + L L G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 64 KEPTVKEWSKELEIEQKALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 420
EGS+GL + VEKF P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +
Sbjct: 124 EGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKT 183
Query: 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
+R Q S ++A+ + I ++ + I R P+S+ V +QDT S L+
Sbjct: 184 QRELSQTLGRSATPSEIAQELEIEPSQIREFLSIARQPISLDVRVGDNQDTEL-SELLED 242
Query: 481 AG 482
G
Sbjct: 243 QG 244
>gi|428314272|ref|YP_007125249.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428255884|gb|AFZ21843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 319
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 132/228 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L L+ K L + G EPTL EWA A
Sbjct: 8 TDLVRTYLREIGRVPLLTHEQEILYGKQVQRLTALQDMKESLWQELGHEPTLEEWATAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS +L S +++G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 LSPSELNSHINAGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRYLAQNLGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA+ + +T +++ + R PLS+ V +QDT D
Sbjct: 188 VGELAQELDLTPKQVREYLERARQPLSLDLRVGDNQDTELVELLEDTG 235
>gi|407961401|dbj|BAM54641.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 328
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 126/211 (59%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q ++ L + K L + GREP+ EWA+A LS L L G
Sbjct: 32 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 91
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI Q RTIRLP +I L+K+ + +R Q+ S ++A+ + I ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATPAEVAKALEIDPSQI 211
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+ ++R P+S+ V +QDT D
Sbjct: 212 REYLSLSRQPISLDVRVGDNQDTELSELLED 242
>gi|443316918|ref|ZP_21046344.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783448|gb|ELR93362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 317
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 137/229 (59%), Gaps = 1/229 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE L Q+Q L LEK + L + R PT EWA A+
Sbjct: 7 TDLVRTYLKEIGRVPLLTHEEEIVLGKQVQHLSLLEKRREALTEELDRTPTQAEWAAAVN 66
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS L + + +G++++ +++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 67 LSEGQLLTIVRAGDTAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q+ +
Sbjct: 127 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQQYGRAAT 186
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+LA + +T +++ + R PLS+ V +QDT S L+ G
Sbjct: 187 VMELAAELELTPKQVRDYLEKARQPLSLDLRVGDNQDTEL-SELLEDEG 234
>gi|427735326|ref|YP_007054870.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427370367|gb|AFY54323.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 332
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 130/210 (61%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT++EE L Q+Q I L K +L + R+PTL EW+ L+ +L +++ G
Sbjct: 35 LLTSEEEIFLAKQVQQRISLLALKEELSEKLQRQPTLQEWSVKAQLNDSELLEQINQGQI 94
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+++K+I ANLRLVV +AK+YQ R + DL+QEG++GL ++V+KFKP G +F++YAYWW
Sbjct: 95 AKQKMIAANLRLVVTIAKKYQKRNLDFPDLIQEGTLGLERAVDKFKPSLGYKFSTYAYWW 154
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI Q SRTIRLP +I L+K+ +R Q+ +P ++A +G ++
Sbjct: 155 IRQGITRAISQQSRTIRLPIHITEKLNKIKRVQRELSQKLGRNPTVTEIAEALGFKPSQI 214
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
+ + R P+S+ V +Q+T Q +
Sbjct: 215 RECLRLARKPMSLDVKVGTEQNTQLQDLLV 244
>gi|434387533|ref|YP_007098144.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428018523|gb|AFY94617.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 318
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 132/218 (60%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L+ L K+ L +FGREP+L EWA A
Sbjct: 8 TDTVRTYLREIGRVPLLTHEQEILYGKQVQQLVSLVAVKNTLMEEFGREPSLTEWATAAN 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ L+ + +G +++ +++ ANLRLVV VAK+Y R I L DL+QEG++G+ + VEKF
Sbjct: 68 IDELQLQKTISAGENAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + +R IRLP +I L+K+ +A+R Q+ +
Sbjct: 128 DPSKGYRFSTYAYWWIRQAITRAIAEKARAIRLPIHITEKLNKIKKAQRSLAQQFGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+LA + ++ +++ + R PLS+ V +QDT
Sbjct: 188 INELAAELELSSKQVREYLERARQPLSLDLRVGDNQDT 225
>gi|22298374|ref|NP_681621.1| RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1]
gi|22294553|dbj|BAC08383.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 309
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 129/211 (61%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q ++ L +++ L + GRE T EWA A L+ +L + L G
Sbjct: 14 LLTHEQEIILGKQVQQMMALREKRDALTKELGREATFEEWAAACNLTPTELCNILKRGER 73
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+++K+I ANLRLVV VAK+YQ R + L DL+QEG++GL + VEKF P G +F++YAYWW
Sbjct: 74 AKQKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERGVEKFDPTRGYKFSTYAYWW 133
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI Q +RTIRLP +I L+K+ +R Q+ S ++A+ + + E++
Sbjct: 134 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEVAKALELEPEQI 193
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+ + R P+S+ V +QDT D
Sbjct: 194 REYLTLARQPVSLDLRVGDNQDTELGELLED 224
>gi|116071698|ref|ZP_01468966.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
gi|116065321|gb|EAU71079.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
Length = 332
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 134/205 (65%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q L+ +E +++L+S+ G +P + AKA LS LK +L G+
Sbjct: 37 LLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELSTVQLKRKLQQGHR 96
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 97 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 156
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI + SRTIRLP +I +L+K+ + +R QE +P +LA+ V + +++
Sbjct: 157 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAQFVDLPEDEV 216
Query: 449 ERLIFITRMPLSMQQPVWADQDTTF 473
+ L+ R P+S++ V DT
Sbjct: 217 KDLMCRARQPVSLEMKVGDGDDTEL 241
>gi|78183723|ref|YP_376157.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9902]
gi|78168017|gb|ABB25114.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9902]
Length = 332
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 139/219 (63%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E L Q+Q L+ +E +++L+S+ G +P + AKA L
Sbjct: 23 DLVRSYLRDIGRVPLLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAEL 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S LK +L G+ ++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF
Sbjct: 83 STVQLKRKLQQGHRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 142
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI + SRTIRLP +I +L+K+ + +R QE +P
Sbjct: 143 PTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTV 202
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+LA+ V + ++++ L+ R P+S++ V DT
Sbjct: 203 TELAQFVDLPEDEVKDLMCRARQPVSLEMKVGDGDDTEL 241
>gi|16331222|ref|NP_441950.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322965|ref|YP_005383818.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326134|ref|YP_005386987.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492018|ref|YP_005409694.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437286|ref|YP_005652010.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815378|ref|YP_007451830.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1001398|dbj|BAA10020.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274318|dbj|BAK50805.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272284|dbj|BAL29803.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275454|dbj|BAL32972.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359278624|dbj|BAL36141.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781347|gb|AGF52316.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 345
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 126/211 (59%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q ++ L + K L + GREP+ EWA+A LS L L G
Sbjct: 49 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 108
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 109 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 168
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI Q RTIRLP +I L+K+ + +R Q+ S ++A+ + I ++
Sbjct: 169 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATPAEVAKALEIDPSQI 228
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+ ++R P+S+ V +QDT D
Sbjct: 229 REYLSLSRQPISLDVRVGDNQDTELSELLED 259
>gi|434395228|ref|YP_007130175.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267069|gb|AFZ33015.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 328
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 130/225 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ + K L + REPT+ EWA + +
Sbjct: 19 DMVRTYLREIGRVPLLTREQEIIYGKQVQQMMSVLDAKEALAKKLHREPTVQEWASHVKM 78
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S DL + G +++K+I ANLRLVV +AK+YQ R + DL+QEG+MGL + VEKF
Sbjct: 79 SEADLHDTVRRGQRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFD 138
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ + +R Q SP
Sbjct: 139 PTRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKIQRELAQRLGRSPSP 198
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A + + ++ + + R P+S+ V +QDT Q D
Sbjct: 199 AEIATELELEPSQIREYLNLARQPVSLDVRVGDNQDTELQDLLED 243
>gi|443329722|ref|YP_007378793.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682348|gb|AFZ61112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 332
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 138/242 (57%)
Query: 238 SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297
S+ VK K +E D +R++L LLT ++E Q+Q ++ + K +L
Sbjct: 6 SQPTKVKSKNNEFSSTADAVRIYLHKIGRIPLLTHEQEIFFAKQVQQMMVMLTAKEELSE 65
Query: 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
+ REPT EWA + L L +L G +++K+I ANLRLVV +AK+YQ R I D
Sbjct: 66 KLQREPTRQEWADKMQLEEDMLLQQLSQGQIAKQKMIQANLRLVVSIAKKYQKRNIEFLD 125
Query: 358 LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKV 417
L+QEG++GL + VEKF P G +F++YAYWW+RQ I +AI Q SRTIRLP ++ L+K+
Sbjct: 126 LIQEGALGLERGVEKFDPTLGYKFSTYAYWWIRQGITRAIAQQSRTIRLPIHMADKLNKI 185
Query: 418 LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTF 477
+R Q+ H+ D ++A+ + + ++ + R P+S+ + ++Q T Q
Sbjct: 186 KRVQRELSQKLGHTADVTEIAQALNLEPRQIRECLQFARQPVSLDMGIGSEQGTQLQDML 245
Query: 478 LD 479
D
Sbjct: 246 KD 247
>gi|440680165|ref|YP_007154960.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677284|gb|AFZ56050.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 327
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 130/225 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + G EP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLLDAKEALSKKLGHEPSLTEWATHVNQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++ + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 SENEVTQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q RTIRLP +I L+K+ + +R Q+ SP
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A+ + + ++ + + R P+S+ V +QDT Q D
Sbjct: 198 TEIAKELELEPAQIREYLNMARQPVSLDVRVGDNQDTELQEMLED 242
>gi|428300988|ref|YP_007139294.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237532|gb|AFZ03322.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 327
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 131/225 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L + REPTL EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIIFGKQVQQMMILVEAKEALAKKLQREPTLEEWAIQVNQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+L +H G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 PEAELNLTVHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q RTIRLP +I L+K+ + +R Q+ SP
Sbjct: 138 PTRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A+ + + ++ + + R P+S+ V +QDT Q D
Sbjct: 198 AEIAKELELEPLQIREYLNMARQPVSLDVRVGDNQDTELQEMLED 242
>gi|406920079|gb|EKD58207.1| hypothetical protein ACD_57C00003G0002 [uncultured bacterium]
Length = 448
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 142/237 (59%), Gaps = 9/237 (3%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA +E EL AQ + + + +L + GR+PTL E A +G
Sbjct: 130 SDPVRMYLREIGKVDLLTAKQEIEL-AQCAEAFKFRRTDKRLAKELGRKPTLPEIAVEMG 188
Query: 314 LSCRDLKSELHS--------GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365
L + +K+ + G ++ LI ANLRLVV +AK+Y GRG++ DL+QEG++G
Sbjct: 189 LDKKVIKAVEKTSKDWNDKQGEAAERMLIQANLRLVVSIAKKYMGRGLTFLDLIQEGNIG 248
Query: 366 LMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYI 425
LM++VEKF + G +F++YA WW+RQ I +A+ SRTIR+P ++ ++K +R
Sbjct: 249 LMRAVEKFDWRRGFKFSTYATWWIRQAITRALADQSRTIRIPVHMVETINKYKRIERELE 308
Query: 426 QEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
Q+ P E++++ +GI +EK + ++ I++ S++ PV ++DT + D G
Sbjct: 309 QKYERPPTAEEVSKEMGIEIEKAQEILKISQDTTSLETPVGKEEDTRLKEFIPDEVG 365
>gi|218247332|ref|YP_002372703.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8801]
gi|218167810|gb|ACK66547.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 328
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 136/239 (56%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A+V K + D +R +L LLT ++E Q+Q ++ L + K +L G
Sbjct: 4 ANVNSKTKQPMYSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQG 63
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EP+ EWAKA+ L +LK + GN ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 64 TEPSDKEWAKAVNLKEPELKKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 420
EGS+GL + VEKF P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +
Sbjct: 124 EGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKT 183
Query: 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+R Q+ S ++A + I ++ + + R P+S+ V +QDT D
Sbjct: 184 QRELSQKLGRSATPAEIAAVLEIEPSQIRECLSMARQPISLDVRVGDNQDTELSELLED 242
>gi|148238489|ref|YP_001223876.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147847028|emb|CAK22579.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 355
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 132/206 (64%), Gaps = 1/206 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT-LIEWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++LQ + G E E AKA GLS LK +L +G
Sbjct: 59 LLSHQQEITLGRQVQELMDLEATEAELQEKRGGEAVPAAELAKAAGLSAVQLKRKLQAGR 118
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 119 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 178
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQ I +AI + SRTIRLP +I +L+K+ + +R Q+ +P +LA V + ++
Sbjct: 179 WIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQDLGRTPSVTELAAFVELPEDE 238
Query: 448 LERLIFITRMPLSMQQPVWADQDTTF 473
++ L+ R P+S++ V DT
Sbjct: 239 VKELMCRARQPVSLEMKVGDGDDTEL 264
>gi|254432638|ref|ZP_05046341.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627091|gb|EDY39650.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 335
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 132/206 (64%), Gaps = 1/206 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGN 327
LLT ++E L Q+Q+L+ LE+ + +L + G P+ E AKA GLS LK L +G
Sbjct: 34 LLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLSPAVLKKRLQAGR 93
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 94 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 153
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQ I +AI + SRTIRLP +I L+K+ + +R QE +P +LA V + E+
Sbjct: 154 WIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTVTELAGYVELPEEE 213
Query: 448 LERLIFITRMPLSMQQPVWADQDTTF 473
++ L+ R P+S++ V +DT
Sbjct: 214 VKDLLCRARQPVSLETKVGDGEDTEL 239
>gi|443323268|ref|ZP_21052276.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442787006|gb|ELR96731.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 328
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 127/225 (56%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K KL Q GRE EWA+ + +
Sbjct: 18 DMVRTYLHEIGRVPLLTPEQEISYGKQVQKMMSLIEAKEKLNKQLGREANKQEWAQYVQM 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+L+ G ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 DPEELEKTQQKGQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q RTIRLP +I L+K+ +R Q +P
Sbjct: 138 PTKGFKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKRTQRELSQRLGRNPSP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++AR + + ++ + + R P+S+ V +QDT D
Sbjct: 198 SEIARELELQPAQIREYLSVARQPISLDVRVGDNQDTELSELLED 242
>gi|37523331|ref|NP_926708.1| RNA polymerase sigma factor SigC [Gloeobacter violaceus PCC 7421]
gi|35214335|dbj|BAC91703.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 362
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 138/220 (62%), Gaps = 4/220 (1%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R++L LL DEE EL Q+Q L++L K LQ+ G E + +WA+A
Sbjct: 48 TDLVRVYLQEIGRVPLLGRDEEVELAQQVQKLMKLTALKESLQTSLGSEYSDEQWAEAAK 107
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ +LK ++ +G+ +++K+I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF
Sbjct: 108 VGLFELKRQVLAGSRAKKKMIEANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKF 167
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI SRTIRLP +I L+++ + +R Q +P
Sbjct: 168 DPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKKTQRKLSQNLGRTPT 227
Query: 434 KEDLARRVGITVEKLERLIFITRMP--LSMQQPVWADQDT 471
++A + + + L ++R+P +S++ V D+DT
Sbjct: 228 ISEIAEELEMEPAHVREL--MSRVPRSVSLETRVGKDKDT 265
>gi|113474616|ref|YP_720677.1| RNA polymerase sigma factor [Trichodesmium erythraeum IMS101]
gi|110165664|gb|ABG50204.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 336
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 143/248 (57%), Gaps = 1/248 (0%)
Query: 232 NHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKE 291
N E N +K K + + D +R +L LLT +EE Q+Q +++ +
Sbjct: 5 NQENKNQKKTQTKFGPT-TYSSMDTVRTYLHEIGRVPLLTREEEIVYGKQVQQMMQFLEL 63
Query: 292 KSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGR 351
K KL+ + R TL+EWA+ + +S + LK + G +++K+I ANLRLVV +AK+YQ R
Sbjct: 64 KEKLEEKLNRTATLLEWAEHLLVSEKVLKQAIKQGQRAKQKMIEANLRLVVAIAKKYQKR 123
Query: 352 GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIY 411
+ DL+QEG++GL + VEKF P G +F++YAYWW+RQ I +AI Q +RTIRLP +I
Sbjct: 124 NMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHIT 183
Query: 412 TLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
L+K+ +R IQ SP ++A+ + + ++ + + R P+S+ V +QDT
Sbjct: 184 EKLNKIKRVQRELIQSLGRSPTPSEIAQALELEPSQIREYLLMARHPISLDLRVGDNQDT 243
Query: 472 TFQSTFLD 479
Q D
Sbjct: 244 ELQELLED 251
>gi|359457298|ref|ZP_09245861.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 327
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 131/226 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q ++ L + + GREP+ EWA
Sbjct: 17 TDMVRTYLHEIGRVPLLTHEEEIVFGKQVQAMMALLDLQKTEMDELGREPSSEEWAAKAN 76
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS L+ LH G +++K+I ANLRLVV VAK+YQ R + L DL+QEG++GL + VEKF
Sbjct: 77 LSPSQLELSLHQGQQAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKF 136
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +A+R Q+ S
Sbjct: 137 DPTRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKAQRELSQKLGRSAT 196
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A + + ++ + I R P+S+ V +QDT + D
Sbjct: 197 PAEIAEALELEPSQIRDYLTIARQPISLDLRVGDNQDTELRDLLED 242
>gi|218441429|ref|YP_002379758.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7424]
gi|218174157|gb|ACK72890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 318
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 130/228 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LLT +EE L ++Q + L+ K L REP EWA A
Sbjct: 8 TDPVRAYLREIGRVPLLTHEEEIVLAKRVQRFMALQDIKDALTQTLKREPQDSEWASAAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
++ +L + +G +++EK++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ITEEELHRAIAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQAKGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA + +T ++ + R PLS+ V +QDT D
Sbjct: 188 ISELAEELELTPRQVRDYLERARQPLSLDLKVGDNQDTELGELLEDTG 235
>gi|124021877|ref|YP_001016184.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962163|gb|ABM76919.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 350
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 134/202 (66%), Gaps = 1/202 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+Q+L+ LE+ +S+L+ + G + E AKA GLS LK +L G
Sbjct: 55 LLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGLSELQLKKKLQIGRR 114
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E++++ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 115 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 174
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI + SRTIRLP +I +L+K+ + +R QE +P +LA V + E++
Sbjct: 175 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELAEFVELPEEEV 234
Query: 449 ERLIFITRMPLSMQQPVWADQD 470
+ L+ R P+S++ V D D
Sbjct: 235 KDLMCRARQPMSLEMKV-GDGD 255
>gi|17231292|ref|NP_487840.1| RNA polymerase sigma factor [Nostoc sp. PCC 7120]
gi|8489801|gb|AAF75758.1|AF262217_2 group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
gi|17132934|dbj|BAB75499.1| group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
Length = 327
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 130/225 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQK 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++K + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 SETEVKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q RTIRLP +I L+K+ + +R Q SP
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPSP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A+ + + ++ + + R P+S+ V +QDT Q D
Sbjct: 198 AEIAKELELEPAQIREYLNMARQPVSLDVKVGDNQDTELQEMLED 242
>gi|443317112|ref|ZP_21046533.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783319|gb|ELR93238.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 327
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 130/225 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E L Q+Q + L K++++ G++P+ EWA A L
Sbjct: 18 DAVRTYLHEIGRVPLLTHEQEIVLGKQVQQFMTLLDLKTQMKESLGQDPSDQEWAGAAHL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
L +LH G ++ ++I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 DTATLTQQLHEGEQAKRQMIEANLRLVVAIAKKYQKRNLEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +R Q S
Sbjct: 138 PMKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRVQRELSQTLGRSATV 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A + + V ++ + + R P+S+ + +QDT Q D
Sbjct: 198 GEIAEALELEVTQVREYLTMARQPISLDVRIGDNQDTELQELLED 242
>gi|75908126|ref|YP_322422.1| RNA polymerase sigma factor [Anabaena variabilis ATCC 29413]
gi|75701851|gb|ABA21527.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 327
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 130/225 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQK 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++K + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 SETEVKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q RTIRLP +I L+K+ + +R Q SP
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPSP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A+ + + ++ + + R P+S+ V +QDT Q D
Sbjct: 198 AEIAKELELEPAQIREYLNMARQPVSLDVKVGDNQDTELQEMLED 242
>gi|116074383|ref|ZP_01471645.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116069688|gb|EAU75440.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 341
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 132/206 (64%), Gaps = 1/206 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE-WAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+QDL+ LE +S+L+S+ G E E AK GLS LK +L +G
Sbjct: 45 LLSHQQEITLGRQVQDLMELEALESELKSESGEEVVAPEALAKKAGLSGVQLKRKLQAGR 104
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 105 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 164
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQ I +AI + SRTIRLP +I +L+K+ + +R QE +P +LA V + E+
Sbjct: 165 WIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAEFVELPEEE 224
Query: 448 LERLIFITRMPLSMQQPVWADQDTTF 473
++ L+ R P+S++ V DT
Sbjct: 225 VKDLMCRARQPVSLEMKVGDGDDTEL 250
>gi|411120413|ref|ZP_11392785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410709082|gb|EKQ66597.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 318
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 130/218 (59%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R +L LLT ++E Q+Q L L K L ++ GR P+ EWA+A
Sbjct: 8 SDLVRTYLREIGRVPLLTHEQEVVFGKQVQRLTLLNDTKDGLANRLGRTPSFEEWAQASQ 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS +LK + G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 LSSAELKQAIAEGEYAKRKMVEANLRLVVSVAKKYTKRNVDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+LA+ + +T +++ + R PLS+ V +QDT
Sbjct: 188 AAELAQELDLTPKQVRDYLEQARQPLSLDLRVGDNQDT 225
>gi|254432550|ref|ZP_05046253.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627003|gb|EDY39562.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 319
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 137/221 (61%), Gaps = 1/221 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAI 312
D +R +L LLT ++E L Q+Q+L+ LE+ + +L + G P+ E AKA
Sbjct: 3 GDLVRSYLRDIGRVPLLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAA 62
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
GLS LK L +G ++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEK
Sbjct: 63 GLSPAVLKKRLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEK 122
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F P G +F++YAYWW+RQ I +AI + SRTIRLP +I L+K+ + +R QE +P
Sbjct: 123 FDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTP 182
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+LA V + E+++ L+ R P+S++ V +DT
Sbjct: 183 TVTELAGYVELPEEEVKDLLCRARQPVSLETKVGDGEDTEL 223
>gi|428320222|ref|YP_007118104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428243902|gb|AFZ09688.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 357
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 142/255 (55%), Gaps = 12/255 (4%)
Query: 227 KPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286
+P VT YN+ A +DP+ LLTA EE EL ++Q+L+
Sbjct: 29 RPTVTRSSAYNNWSA------------DDPVGALFKEMARYPLLTAAEEVELARRVQELV 76
Query: 287 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAK 346
L++ + +LQ + R PT E A A+G+S L+ H S++ K+I++NLRLVV +AK
Sbjct: 77 ALDELEQRLQQELDRVPTKAELAAALGISETQLQQLRHQCQSAKRKMISSNLRLVVSIAK 136
Query: 347 QYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 406
+Y RG+ DL+QEG++GL ++ EKF P+ G +F++YAYWW+RQ I + I RTIRL
Sbjct: 137 RYLNRGVPFLDLIQEGALGLNRAAEKFDPEKGYKFSTYAYWWIRQGITRTIANQGRTIRL 196
Query: 407 PENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVW 466
P +I L+K+ + R + +P + +LAR + ++ E L L + R LS+ +
Sbjct: 197 PVHIVEQLNKLKKVYRDLKRSLQRNPTETELAREMEVSCEHLRYLQQVRRQSLSLNHRIG 256
Query: 467 ADQDTTFQSTFLDAA 481
+++ + D A
Sbjct: 257 SEESSELLDVLEDNA 271
>gi|354565375|ref|ZP_08984550.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353549334|gb|EHC18776.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 327
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 131/225 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLLDAKEALVKKLRREPSLEEWAAHVKK 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++K + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 SESEVKQTVQQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q RTIRLP +I L+K+ + +R Q+ SP
Sbjct: 138 PTRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A+ + + ++ + + R P+S+ V +QDT Q D
Sbjct: 198 AEIAQELELEPAQIREYLNMARQPVSLDVKVGDNQDTELQEMLED 242
>gi|116073053|ref|ZP_01470315.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116068358|gb|EAU74110.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 321
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 132/206 (64%), Gaps = 1/206 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE-WAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+QDL+ LE +S+L+S+ G + E AK GLS LK +L +G
Sbjct: 25 LLSHQQEITLGRQVQDLMELEALESELKSESGEDVVAPEALAKKAGLSGVQLKRKLQAGR 84
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 144
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQ I +AI + SRTIRLP +I +L+K+ + +R QE +P +LA V + E+
Sbjct: 145 WIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAEFVELPEEE 204
Query: 448 LERLIFITRMPLSMQQPVWADQDTTF 473
++ L+ R P+S++ V DT
Sbjct: 205 VKDLMCRARQPVSLEMKVGDGDDTEL 230
>gi|16332132|ref|NP_442860.1| RNA polymerase sigma factor RpoD [Synechocystis sp. PCC 6803]
gi|383323875|ref|YP_005384729.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383327044|ref|YP_005387898.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492928|ref|YP_005410605.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384438196|ref|YP_005652921.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451816284|ref|YP_007452736.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|47717353|sp|P74565.1|RPOD_SYNY3 RecName: Full=RNA polymerase sigma factor RpoD
gi|1653761|dbj|BAA18672.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339275229|dbj|BAK51716.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359273195|dbj|BAL30714.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359276365|dbj|BAL33883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279535|dbj|BAL37052.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451782253|gb|AGF53222.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 425
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 158/289 (54%), Gaps = 51/289 (17%)
Query: 239 RKASVKKK-LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297
RK +VKKK +E D +R++L +LL A+EE EL QI DL+ LE + L
Sbjct: 59 RKDAVKKKPYTE-----DSIRIYLQEIGRIRLLRAEEEIELARQIADLLELELIRDNLTL 113
Query: 298 QFGREPTLIEWAKAI----------------GLSCRDLKSELHSGNS------------- 328
Q R+P+ +EW K + +D+ S L + ++
Sbjct: 114 QLERQPSELEWGKQVWKLETAKQRLVGDKKKEPKKKDIDSYLANPDNELSLENEWSQQPN 173
Query: 329 ---------------SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 174 KNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 233
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
+ G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +L QE P
Sbjct: 234 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPT 293
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+E++A ++ +T+EKL + ++P+S++ P+ ++D+ F++A G
Sbjct: 294 EEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEADG 341
>gi|56750866|ref|YP_171567.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 6301]
gi|56685825|dbj|BAD79047.1| group2 RNA polymerase sigma factor RpoD3 [Synechococcus elongatus
PCC 6301]
Length = 326
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 137/221 (61%), Gaps = 1/221 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAI 312
+D +R +L LLT +EE L ++Q ++L++ + LQS+ G R+P+ +EWA A
Sbjct: 15 SDLVRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAA 74
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
GLS +L+ + H G ++ K+I ANLRLVV VAK+Y R + L DL+QEG++G+ + VEK
Sbjct: 75 GLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEK 134
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F P G RF++YAYWW+RQ I +AI + +RTIRLP +I L+K+ + +R Q+ +
Sbjct: 135 FDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLGRTA 194
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+LA + +T ++ + R PLS+ V +QDT
Sbjct: 195 TLPELAAALDLTPAQVRDYLEKARHPLSLDLRVGDNQDTEL 235
>gi|308804840|ref|XP_003079732.1| SigA (ISS) [Ostreococcus tauri]
gi|116058189|emb|CAL53378.1| SigA (ISS) [Ostreococcus tauri]
Length = 525
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 138/229 (60%), Gaps = 3/229 (1%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE--WAKAI 312
D +R +L + LL A +E EL +IQDL+ LE + L + G L E WA A
Sbjct: 201 DSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLIEETGPGVELSESQWAAAA 260
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
GL+ L+ LH G +++ ++I ANLRLVV +AK+Y +S DL+QEG +GL++ EK
Sbjct: 261 GLNVSALRQRLHDGKAAKNEMIQANLRLVVSIAKKYANTNMSFQDLIQEGCVGLIRGAEK 320
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F Q G +F++YA+WW+RQ + ++I SRTIRLP +++ ++S++ + ++ + P
Sbjct: 321 FDFQRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRISKMEQKFALYNGRPP 380
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWA-DQDTTFQSTFLDA 480
E++A + ++VEK+ ++ + P+S+ Q + ++ T + T +DA
Sbjct: 381 TLEEIASEMEMSVEKITQIKKAAQAPVSLAQTMGGENKGRTIEDTLIDA 429
>gi|81299483|ref|YP_399691.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 7942]
gi|123557285|sp|Q31QG5.1|RPOD3_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD3
gi|81168364|gb|ABB56704.1| group2 RNA polymerase sigma factor SigD [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 137/221 (61%), Gaps = 1/221 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAI 312
+D +R +L LLT +EE L ++Q ++L++ + LQS+ G R+P+ +EWA A
Sbjct: 9 SDLVRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAA 68
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
GLS +L+ + H G ++ K+I ANLRLVV VAK+Y R + L DL+QEG++G+ + VEK
Sbjct: 69 GLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEK 128
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F P G RF++YAYWW+RQ I +AI + +RTIRLP +I L+K+ + +R Q+ +
Sbjct: 129 FDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLGRTA 188
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+LA + +T ++ + R PLS+ V +QDT
Sbjct: 189 TLPELAAALDLTPAQVRDYLEKARHPLSLDLRVGDNQDTEL 229
>gi|148239880|ref|YP_001225267.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 7803]
gi|147848419|emb|CAK23970.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 322
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 132/206 (64%), Gaps = 1/206 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT-LIEWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++LQ + G E E AKA GLS LK +L +G
Sbjct: 25 LLSHQQEITLGRQVQELMDLEATEAELQEKRGGEAVPAAELAKAAGLSAVQLKRKLQAGR 84
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 144
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQ I +AI + SRTIRLP +I +L+K+ + +R Q+ +P +LA V + ++
Sbjct: 145 WIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQDLGRTPSVTELAAFVELPEDE 204
Query: 448 LERLIFITRMPLSMQQPVWADQDTTF 473
++ L+ R P+S++ V DT
Sbjct: 205 VKELMCRARQPVSLEMKVGDGDDTEL 230
>gi|428770800|ref|YP_007162590.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685079|gb|AFZ54546.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 332
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 133/228 (58%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E Q+Q ++ L + K L+ RE TL EWA+
Sbjct: 22 DMVRTYLQEIGKVPLLSHEQEIVFGKQVQQMMSLYEVKENLEKNLEREVTLEEWAQKADK 81
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ ++K +H G +++K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 82 TPNEVKKIIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 141
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ + +R Q+ SP
Sbjct: 142 PTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSPSP 201
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++A + + ++ I R P+S+ V +QDT S L+ G
Sbjct: 202 NEIAEALQLEPAQIREYFSIARQPISLDVKVGDNQDTEL-SELLEDEG 248
>gi|257061333|ref|YP_003139221.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8802]
gi|256591499|gb|ACV02386.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 328
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 136/239 (56%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A+V K + D +R +L LLT ++E Q+Q ++ L + K +L G
Sbjct: 4 ANVNSKTKQPMYSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQG 63
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EP+ EWAKA+ L +L+ + GN ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 64 TEPSDKEWAKAVNLKEPELQKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 420
EGS+GL + VEKF P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +
Sbjct: 124 EGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKT 183
Query: 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+R Q+ S ++A + I ++ + + R P+S+ V +QDT D
Sbjct: 184 QRELSQKLGRSATPAEIAAVLEIEPSQIRECLSMARQPISLDVRVGDNQDTELSELLED 242
>gi|126659035|ref|ZP_01730176.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
gi|126619692|gb|EAZ90420.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
Length = 416
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 150/274 (54%), Gaps = 47/274 (17%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI-- 312
D +R++L +LL A+EE EL +I DL++LE+ + L + +EPT +W K I
Sbjct: 60 DSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEELDQEPTDEQWGKRIFQ 119
Query: 313 ---------GLSCRD-----------------------------------LKSELHSGNS 328
S ++ K L+ G
Sbjct: 120 WENIEQMLRAQSSKEKEPKWSEVTDMLQKAEIISDLEKTWKLESKAYLPKFKRRLYLGRK 179
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+++K++++NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW
Sbjct: 180 AKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 239
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI SRTIRLP ++Y +S++ + +L QE P +E++A R+ +T+EKL
Sbjct: 240 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKL 299
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+ ++P+S++ P+ ++D+ F++A G
Sbjct: 300 RFIAKSAQLPISLETPIGKEEDSRL-GDFIEADG 332
>gi|443320707|ref|ZP_21049791.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442789590|gb|ELR99239.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 318
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 133/228 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE ++Q L+ LEK K +L+ + E + EWAKA
Sbjct: 8 TDSVRSYLKEIGRVPLLTHEEEIIYAKRVQKLVELEKCKHQLEEKTKTELSEAEWAKAAN 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
++ L+ ++ +G ++ K+I ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 VTVAKLRKDVDAGEVAKRKMIEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R Q+ S
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQIAQQKGRSAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA + +T ++ + R PLS+ V + DT D+
Sbjct: 188 IAELAEELELTPRQVREYLERARQPLSLDLRVGDNNDTELGELLEDSG 235
>gi|113954561|ref|YP_729335.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881912|gb|ABI46870.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 335
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 94/237 (39%), Positives = 144/237 (60%), Gaps = 2/237 (0%)
Query: 238 SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297
SR AS + G + D +R +L LL+ +E L Q+Q+L+ LE +++L+
Sbjct: 9 SRPASASTGRASGAE-VDLVRSYLRDIGRVPLLSHQQEITLGRQVQELMDLEALEAELKD 67
Query: 298 QFGREPTLIE-WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
Q G E E AKA G+S LK +L +G ++E+++ ANLRLVV VAK+Y R + L
Sbjct: 68 QRGGEEVAREEVAKAAGVSAAQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELL 127
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSK 416
DL+QEG++GL++ VEKF P G +F++YAYWW+RQ I +AI + SRTIRLP +I +L+K
Sbjct: 128 DLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNK 187
Query: 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+ + +R QE +P +LA V + E+++ L+ R P+S++ V DT
Sbjct: 188 LKKGQRELSQELGRTPSVTELASFVELPEEEVKDLMCRARQPVSLEMKVGDGDDTEL 244
>gi|427730640|ref|YP_007076877.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427366559|gb|AFY49280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 352
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 130/225 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REP+L EWA +
Sbjct: 43 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMSLLDAKEALAKKLEREPSLPEWADHVHQ 102
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++K + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 103 SETEVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 162
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q RTIRLP +I L+K+ + +R Q SP
Sbjct: 163 PTRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPSP 222
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A+ + + ++ + + R P+S+ V +QDT Q D
Sbjct: 223 AEIAKELELEPAQIREYLNMARQPVSLDVRVGDNQDTELQEMLED 267
>gi|282899735|ref|ZP_06307698.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195350|gb|EFA70284.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 332
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 131/226 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L + K L + R+P+L EWAKA
Sbjct: 22 TDIVRTYLREIGKVPLLTHEQEIYYGKQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQ 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L ++L L G ++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 82 LDPQELNRLLGQGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 141
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + +RTIRLP +I L+K+ +A+R Q SP
Sbjct: 142 DPSKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRYLSQTLGRSPS 201
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA+ + IT +++ + R+PLS+ + + DT D
Sbjct: 202 IAELAQELEITPKQVRDCLEKARLPLSLDLRLGDNYDTELGEMLED 247
>gi|427717250|ref|YP_007065244.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427349686|gb|AFY32410.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 318
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 130/226 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q GR+PTL EWA
Sbjct: 8 TDLVRTYLREIGRVPLLTHEEEIFYGKQVQRATALHEAREYLAAQLGRQPTLEEWATTAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L +L + G ++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 68 LESTELNDIIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + +RTIRLP +I L+K+ +A+R Q+ +P
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPS 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA + +T +++ + R+PLS+ + + DT D
Sbjct: 188 AGELAEELELTTKQVREYLEKARLPLSLDLRLGDNYDTELGEMLED 233
>gi|427737532|ref|YP_007057076.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427372573|gb|AFY56529.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 330
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 133/226 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R FL LL+ +EE +++ L+ L + K L + EP+L WA A+ +
Sbjct: 21 DTVRSFLVQIGRVPLLSREEEIFFAQRVKQLMELLQVKEDLTEKSSSEPSLSTWANAVEM 80
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ L+ L +G +R+K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 81 TPTQLQETLDNGEIARQKMIEANLRLVVAIAKKYQHRNLEFVDLIQEGTLGLQRGVEKFD 140
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +A+ Q SR+IRLP ++ L K+ +A+R Q+ +P
Sbjct: 141 PDKGYKFSTYAYWWIRQAITRALDQKSRSIRLPIHVCQTLKKIKKARRDLTQQLGRNPTI 200
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
+++ V + +++ + ++R P+S+ V QDT Q D
Sbjct: 201 SEISSHVSLKPAQIQDYLHMSRQPVSLDLRVGEGQDTELQDLLEDT 246
>gi|376003181|ref|ZP_09780996.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375328506|emb|CCE16749.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 332
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 134/225 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE ++Q ++ L + + +L + R+PT EW+ GL
Sbjct: 23 DAVRTYLHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDRDPTAAEWSAKAGL 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++ ++ G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 83 SESEMTEIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 142
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q+SRTIRLP +I L+K+ + +R Q+ +
Sbjct: 143 PMRGYKFSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKIKKVQRELFQQYGRNATP 202
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A+ + + ++ + +R P+S+ V +QDT Q D
Sbjct: 203 TEIAKALDLEPSQIRDYLLASRHPVSLDLRVGDNQDTELQDLLED 247
>gi|434396665|ref|YP_007130669.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428267762|gb|AFZ33703.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 327
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 135/228 (59%), Gaps = 1/228 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L +K KL+ + G+E +L EWA + L
Sbjct: 18 DLVRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLTKKEKLEHKLGKELSLKEWANQVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L + G ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEK+
Sbjct: 78 SEAELDRAIKQGQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKYD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ + +R Q+ S
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++A+ + + ++ + + R P+S+ V +QDT S L+ G
Sbjct: 198 AEIAQELELDTAQIREYLNVARQPISLDVRVGDNQDTEL-SELLEDEG 244
>gi|119513754|ref|ZP_01632741.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
gi|119461595|gb|EAW42645.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
Length = 327
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 129/225 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT DEE Q+Q ++ L K L + +P+L EWA + L
Sbjct: 18 DMVRTYLREIGRVPLLTRDEEIIFGKQVQQMMTLLDAKQALAKELDHDPSLPEWAAQVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+++ + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 PEKEVTQIVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q RTIRLP +I L+K+ + +R Q+ SP
Sbjct: 138 PTRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKFGRSPTP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A + + ++ + + R P+S+ V +QDT Q D
Sbjct: 198 TEIAHELELEPMQIREYLNMARQPVSLDVKVGDNQDTELQEMLED 242
>gi|427714236|ref|YP_007062860.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427378365|gb|AFY62317.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 325
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 130/226 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E L Q+Q L+RL + L ++ GREPTL E A
Sbjct: 15 TDMVRTYLHEIGRVPLLTHEQEIILGKQVQQLMRLRDLEETLTTELGREPTLAELATVAE 74
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ L L G +++K+I ANLRLVV VAK+YQ R + L DL+QEG++GL + VEKF
Sbjct: 75 MPPEKLNLALRKGQRAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKF 134
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +R Q S
Sbjct: 135 DPTRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELSQGLGRSAT 194
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A+ + + ++ + ++R P+S+ V +QDT D
Sbjct: 195 PAEIAQALELEPAQIREYLTLSRQPISLDLRVGDNQDTELGELLED 240
>gi|145347899|ref|XP_001418397.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578626|gb|ABO96690.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 344
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 138/229 (60%), Gaps = 3/229 (1%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKL--QSQFGREPTLIEWAKAI 312
D +R +L + LL A +E EL +IQDL+ LE + L ++ G E T +WA A
Sbjct: 15 DSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLVEETGPGAEVTDYQWASAA 74
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
GL+ + L L G S++ ++I ANLRLVV +AK+Y +S DL+QEG +GL++ EK
Sbjct: 75 GLNVQALHQRLRDGKSAKNEMIQANLRLVVSIAKKYANSNMSFQDLIQEGCVGLIRGAEK 134
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F Q G +F++YA+WW+RQ + ++I SRTIRLP +++ ++S++ + ++ + +P
Sbjct: 135 FDFQRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRISKMEQKFALHNGRNP 194
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWAD-QDTTFQSTFLDA 480
E++A + ++ EK+ ++ + P+S+ Q + D + T + T +D
Sbjct: 195 TTEEIAAEMDMSAEKITQIKKAAQAPVSLAQTMGGDNKGRTVEDTLVDV 243
>gi|1405331|dbj|BAA11832.1| chloroplast RNA polymerase sigma subunit [Cyanidium caldarium]
Length = 591
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 132/223 (59%), Gaps = 2/223 (0%)
Query: 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI 312
++D +R +L +LL EE EL Q+ L+ LE+ + + + G+ PT EWA+
Sbjct: 274 KDDTIRSYLREIGRYQLLHPGEEIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQGC 333
Query: 313 GLS--CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370
G L+ + G ++E+++ ANLRLVV +AK+Y RG++L DL+QEGS+GL++ V
Sbjct: 334 GYGDDVEKLREHIRDGRKAKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGV 393
Query: 371 EKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNH 430
EKF + G RF++YA WW+RQ+I +AI SR+IRLP +++ +S + + + E
Sbjct: 394 EKFDAERGFRFSTYATWWIRQSITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVELGR 453
Query: 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
P +E++ VGI K ++ +R +S++ P+ + D F
Sbjct: 454 PPSEEEICESVGIDRAKYRLVMECSRNIVSLETPLRSGDDVHF 496
>gi|298490639|ref|YP_003720816.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298232557|gb|ADI63693.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 327
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 130/225 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + EP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLLDAKEVLAKKLDHEPSLPEWAAHVNQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++K + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 SETEVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q RTIRLP +I L+K+ + +R Q+ SP
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A+ + + ++ + + R P+S+ V +QDT Q D
Sbjct: 198 TEIAKELELEPAQIREYLNMARQPVSLDVRVGDNQDTELQEMLED 242
>gi|427720859|ref|YP_007068853.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427353295|gb|AFY36019.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 327
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 130/225 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIIFGKQVQQMMTLLDAKEDLAKKLHREPSLEEWANLVHQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
++K + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 PETEVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q RTIRLP +I L+K+ + +R Q+ SP
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A+ + + ++ + + R P+S+ V +QDT Q D
Sbjct: 198 AEIAKELELEPAQIREYLNMARQPVSLDVRVGDNQDTELQEMLED 242
>gi|427709274|ref|YP_007051651.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361779|gb|AFY44501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 377
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 136/211 (64%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ADEE EL +++ L + + ++ LQ Q G++PT ++ A + L+ + L+S L+ G
Sbjct: 79 LLKADEEVELARRVRFLEEVREIQAALQEQLGQQPTKVQVAAQLDLTEKQLESRLYQGRV 138
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 198
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIRLP +I L+K+ +A+R Q+ H+P + ++A + +TV++L
Sbjct: 199 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLGHNPSEAEMAAFLEMTVQQL 258
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+L + R LS+ V ++DT D
Sbjct: 259 RQLQQLRRQALSLNHRVGKEEDTELMDLLED 289
>gi|440682243|ref|YP_007157038.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679362|gb|AFZ58128.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 318
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 132/229 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q R+P L EWA A
Sbjct: 8 TDLVRTYLREIGRVPLLTHEEEIRYGKQVQRCTALYEVRENLATQLDRQPNLEEWAAAAQ 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ +L + G +++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 68 IELVELNEAIAEGETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + +RTIRLP +I L+K+ +A+R Q+ +P
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+LA+ + +T ++++ + R+PLS+ + + DT D
Sbjct: 188 ATELAQELELTPKQVQECLEKARLPLSLDLRLGDNYDTELGELLEDTGA 236
>gi|16330303|ref|NP_441031.1| RNA polymerase sigma factor SigD [Synechocystis sp. PCC 6803]
gi|383322044|ref|YP_005382897.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325213|ref|YP_005386066.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491097|ref|YP_005408773.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436364|ref|YP_005651088.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814461|ref|YP_007450913.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652792|dbj|BAA17711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273396|dbj|BAK49883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271363|dbj|BAL28882.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274533|dbj|BAL32051.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277703|dbj|BAL35220.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958220|dbj|BAM51460.1| RNA polymerase sigma factor SigD [Bacillus subtilis BEST7613]
gi|451780430|gb|AGF51399.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 318
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 134/226 (59%), Gaps = 1/226 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRL-EKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE QIQ ++ L E +KS + + G + EWAKA
Sbjct: 8 DSVRAYLREIGRVPLLTHEEEIVYAKQIQQVVSLNEIKKSLAEGKDGEPVSPSEWAKAAD 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS R+L+ + G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 LSIRELEKAIKEGERAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R QE +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQEKGRAAS 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA + +T +++ + +R PLS+ V +QDT D
Sbjct: 188 IAELAEHLELTPKQVREYLERSRHPLSLDLRVGDNQDTELGDLLED 233
>gi|443327806|ref|ZP_21056414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792535|gb|ELS02014.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 375
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 128/204 (62%), Gaps = 1/204 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSGN 327
LL DEE L +++ ++ E + L Q R P+ EWA+AIGLS R+L+ L+ G
Sbjct: 76 LLNTDEEVVLANEVKLMVEAEAIRQDLIEQLDRNPSREEWAQAIGLSSTRELEKFLYRGK 135
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 136 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYW 195
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQ I + I +RTIRLP +I L+K+ +A+R Q+ +P +++LA + I +
Sbjct: 196 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRNLKQKLQRNPSEQELADELKIPPAQ 255
Query: 448 LERLIFITRMPLSMQQPVWADQDT 471
L +L+ + R LS+ V +DT
Sbjct: 256 LRQLLELRRQSLSLNHRVGKAEDT 279
>gi|87124760|ref|ZP_01080608.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86167639|gb|EAQ68898.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 321
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 131/206 (63%), Gaps = 1/206 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT-LIEWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++L+ Q G E E A A GLS LK +L +G
Sbjct: 25 LLSHQQEITLGRQVQELMELEALEAELRDQRGGEAVPAAELATAAGLSALQLKRKLQAGR 84
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 144
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQ I +AI + SRTIRLP +I +L+K+ + +R QE +P +LA V + E+
Sbjct: 145 WIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAGFVELPEEE 204
Query: 448 LERLIFITRMPLSMQQPVWADQDTTF 473
++ L+ R P+S++ V DT
Sbjct: 205 VKDLMCRARQPVSLEMKVGDGDDTEL 230
>gi|352095348|ref|ZP_08956451.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679359|gb|EHA62501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 335
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 144/237 (60%), Gaps = 2/237 (0%)
Query: 238 SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297
SR AS + G + D +R +L LL+ +E L Q+Q+L+ LE +++L+
Sbjct: 9 SRPASASTGRASGAE-VDLVRSYLRDIGRVPLLSHQQEITLGRQVQELMDLEALEAELKD 67
Query: 298 QFGREPTLIE-WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
Q G + E AKA G+S LK +L +G ++E+++ ANLRLVV VAK+Y R + L
Sbjct: 68 QRGEDQVAREEVAKAAGVSAAQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELL 127
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSK 416
DL+QEG++GL++ VEKF P G +F++YAYWW+RQ I +AI + SRTIRLP +I +L+K
Sbjct: 128 DLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNK 187
Query: 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+ + +R QE +P +LA V + E+++ L+ R P+S++ V DT
Sbjct: 188 LKKGQRELSQELGRTPSVTELASFVELPEEEVKDLMCRARQPVSLEMKVGDGDDTEL 244
>gi|124026787|ref|YP_001015902.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|123961855|gb|ABM76638.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 335
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 133/205 (64%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+QDL+ LE +++L+S G +P + +A GLS LK +L SG
Sbjct: 40 LLSHEQEITLGRQVQDLVVLENLETELESDLGEKPDINFFADKAGLSPIQLKKKLKSGRR 99
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI + SR+IRLP +I +L+K+ + +R QE + +P ++L+ V + +
Sbjct: 160 IRQGITRAIAEKSRSIRLPIHITEMLNKLKKGQRELSQELSRTPTLKELSEYVELPETDV 219
Query: 449 ERLIFITRMPLSMQQPVWADQDTTF 473
+ L+ P+S++ + +DT
Sbjct: 220 KDLMSRAGQPVSLETKIGDGEDTIL 244
>gi|220907092|ref|YP_002482403.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7425]
gi|219863703|gb|ACL44042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 318
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 135/229 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L +++ + +L + G EP L EWA A
Sbjct: 8 KDLVRAYLREIGRVPLLTHEQEILYGKQVQQLAIVQQVREELSDRLGHEPDLTEWATAAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS +L+ ++ G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 LSEAELQGVVNRGELAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q+ +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQQLGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+LA+ + +T +++ + +R PLS+ V +QDT D A
Sbjct: 188 IGELAQELELTPKQVREYLERSRQPLSLDVRVGDNQDTELGELLEDTAA 236
>gi|443474760|ref|ZP_21064729.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443020446|gb|ELS34403.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 336
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 133/227 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ +EE Q+Q ++ L + + K+ R PT EWA+A+GL
Sbjct: 27 DMVRTYLHEIGKIPLLSNEEEIVYGKQVQQMMLLFEVQEKIAHNSDRLPTEQEWAEAVGL 86
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
L S + G ++ K+I ANLRLVV VAK+YQ R + L DL+QEG++GL ++V+KF
Sbjct: 87 EPEILHSNIRIGTRAKRKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERAVDKFD 146
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +A+R Q+
Sbjct: 147 PTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPVHITEKLNKIKKAQRQLSQDLGRVATV 206
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
++A + I +++ + ++R P+S+ + +QDT D
Sbjct: 207 AEIAHELKIKTDQVRECLSLSRQPISLDLRIGDNQDTELAELLEDTG 253
>gi|449499005|ref|XP_004160694.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor
sigB-like [Cucumis sativus]
Length = 286
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 122/187 (65%)
Query: 284 DLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVH 343
DL++LE+ + +L ++G EPT +WA A G++ R L+ L+ G ++K+I +N+RLV+
Sbjct: 3 DLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVIS 62
Query: 344 VAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRT 403
+ K YQG G++L DL+QEG GL++ EKF G +F++YA+WW++Q +RK + SRT
Sbjct: 63 IXKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRT 122
Query: 404 IRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQ 463
IRLP ++ +V EA++ + E PD +++A G+++++L ++ + P S++Q
Sbjct: 123 IRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQ 182
Query: 464 PVWADQD 470
+ +Q+
Sbjct: 183 KIGINQN 189
>gi|434406935|ref|YP_007149820.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428261190|gb|AFZ27140.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 349
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 130/226 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q GR+P L EWA A
Sbjct: 39 TDLVRTYLREIGRVPLLTHEEEIFYGKQVQRATALHEVREFLATQLGRQPNLEEWAAATK 98
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L L + G ++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 99 LETTALNEAIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 158
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + +RTIRLP +I L+K+ +A+R Q+ +P
Sbjct: 159 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQQLGRAPT 218
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA+ + +T +++ + R+PLS+ + + DT D
Sbjct: 219 AAELAQELELTPKQVREYLEKARLPLSLDLRLGDNYDTELGEMLED 264
>gi|428207075|ref|YP_007091428.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008996|gb|AFY87559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 330
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 129/225 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REPT+ EW +
Sbjct: 21 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMALLDAKEALVKKLRREPTMEEWTAKVNT 80
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L + G +++K+I ANLRLVV +AK+YQ R + DL+QEG+MGL + VEKF
Sbjct: 81 SEAELNDLIRKGQRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFD 140
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ + +R Q SP+
Sbjct: 141 PIRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELAQTLGRSPNA 200
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A + + ++ + + R P+S+ V +QDT Q D
Sbjct: 201 VEIAEALELEPAQIREYLNLARQPVSLDVRVGDNQDTELQDLLED 245
>gi|427731958|ref|YP_007078195.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427367877|gb|AFY50598.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 318
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 126/211 (59%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT +EE Q+Q L++ + L S+ R+PTL EWAKA L +L + G
Sbjct: 23 LLTHEEEIFYGKQVQRSSSLQEVREDLASKLDRQPTLEEWAKAAELDIAELNEAIADGEF 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF P G RF++YAYWW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI + +RTIRLP +I L+K+ +A+R Q +P +LA + +T +++
Sbjct: 143 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPSASELASELELTPKQV 202
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+ R+PLS+ + + DT D
Sbjct: 203 REYLEKARLPLSLDLRLGDNYDTELGEMLED 233
>gi|186684216|ref|YP_001867412.1| RNA polymerase sigma factor [Nostoc punctiforme PCC 73102]
gi|186466668|gb|ACC82469.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 327
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 130/227 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REP + EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLIDAKEVLAKKLHREPDMSEWADVVQQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +++ + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 SETEVQQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q RTIRLP +I L+K+ + +R Q SP
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPTP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
++A+ + + ++ + + R P+S+ V +QDT Q D+
Sbjct: 198 AEIAKELELEPAQIREYLNMARQPVSLDVKVGDNQDTELQEMLEDSG 244
>gi|354566206|ref|ZP_08985379.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353546714|gb|EHC16162.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 318
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 128/226 (56%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q GREPTL EWA A
Sbjct: 8 TDLVRTYLREIGRVPLLTHEEEIFYGKQVQRATALHEVRELLATQLGREPTLEEWATATQ 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L +L + ++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 68 LELTELNQAIADAEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q +P
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAPS 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA+ + +T ++ + R+PLS+ + + DT D
Sbjct: 188 VAELAQELELTSRQVREYLEKARVPLSLDIRLGDNYDTELGEMLED 233
>gi|72383045|ref|YP_292400.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL2A]
gi|72002895|gb|AAZ58697.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL2A]
Length = 335
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 133/205 (64%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+QDL+ LE +++L+S G +P + +A G+S LK +L SG
Sbjct: 40 LLSHEQEITLGRQVQDLVSLENLETELESDLGEKPDINFFADKAGISPIQLKKKLKSGRR 99
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI + SR+IRLP +I +L+K+ + +R QE + +P ++L+ V + +
Sbjct: 160 IRQGITRAIAEKSRSIRLPIHITEMLNKLKKGQRELSQELSRTPTLKELSEYVELPETDV 219
Query: 449 ERLIFITRMPLSMQQPVWADQDTTF 473
+ L+ P+S++ + +DT
Sbjct: 220 KDLMSRAGQPVSLETKIGDGEDTIL 244
>gi|427703469|ref|YP_007046691.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427346637|gb|AFY29350.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 356
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 138/219 (63%), Gaps = 1/219 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAI 312
D +R +L LL+ ++E L Q+Q+L+ LE+ + +L+ + G +P+ E A A
Sbjct: 45 GDLVRSYLRDIGRVPLLSHEQEITLGRQVQELMALEELREELKMRAGGTDPSQQELAAAA 104
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
GL L+ LH+G ++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEK
Sbjct: 105 GLRPEVLRKRLHAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEK 164
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F P G +F++YAYWW+RQ I +AI + SRTIRLP +I L+K+ + +R QE +P
Sbjct: 165 FDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTP 224
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+LA V + E+++ L+ R P+S++ V +DT
Sbjct: 225 TLSELAVAVELPEEEVKDLLCRARQPVSLETKVGDGEDT 263
>gi|87123242|ref|ZP_01079093.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86168962|gb|EAQ70218.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 309
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 131/206 (63%), Gaps = 1/206 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT-LIEWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++L+ Q G E E A A GLS LK +L +G
Sbjct: 13 LLSHQQEITLGRQVQELMELEALEAELRDQRGGEAVPAAELATAAGLSALQLKRKLQAGR 72
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 73 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 132
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQ I +AI + SRTIRLP +I +L+K+ + +R QE +P +LA V + E+
Sbjct: 133 WIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAGFVELPEEE 192
Query: 448 LERLIFITRMPLSMQQPVWADQDTTF 473
++ L+ R P+S++ V DT
Sbjct: 193 VKDLMCRARQPVSLEMKVGDGDDTEL 218
>gi|427724985|ref|YP_007072262.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356705|gb|AFY39428.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 373
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 129/204 (63%), Gaps = 1/204 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL DEE +L ++ L E+++ L + GR P+ EWA + + + R+L S+L+ G
Sbjct: 74 LLKPDEEIQLAHSVKFLNDAEEKRLALTEELGRSPSKEEWAAVLKIATIRELNSQLYKGR 133
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 134 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 193
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQ I + I +RTIRLP +I L+K+ +A+R Q+ +P + +LA+ + I+ ++
Sbjct: 194 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRTLKQKLQRNPSETELAQELDISADQ 253
Query: 448 LERLIFITRMPLSMQQPVWADQDT 471
L L+ + R LS+ V +DT
Sbjct: 254 LHHLLQLRRQSLSLNHRVGKGEDT 277
>gi|352093658|ref|ZP_08954829.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679998|gb|EHA63130.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 321
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 132/206 (64%), Gaps = 1/206 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE-WAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++L+ Q G + E AKA G+S LK +L +G
Sbjct: 25 LLSHQQEITLGRQVQELMDLEALEAELKDQRGEDQVAREEVAKAAGVSAAQLKRKLQAGR 84
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 144
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQ I +AI + SRTIRLP +I +L+K+ + +R QE +P +LA V + E+
Sbjct: 145 WIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEEE 204
Query: 448 LERLIFITRMPLSMQQPVWADQDTTF 473
++ L+ R P+S++ V DT
Sbjct: 205 VKDLMCRARQPVSLEMKVGDGDDTEL 230
>gi|443324962|ref|ZP_21053681.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442795431|gb|ELS04799.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 328
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 132/214 (61%), Gaps = 1/214 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E Q+Q ++ L +KS+L+ Q RE +L EW+++ +S +L L G
Sbjct: 33 LLTNEQEIVYGKQVQAMMALLIKKSELEKQLEREISLQEWSESAQISEPELNRLLKLGQR 92
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 93 AKSKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPMKGYKFSTYAYWW 152
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI Q +RTIRLP +I L+K+ + +R Q+ +P+ ++A + + ++
Sbjct: 153 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRNPNPREIAAELELETSQI 212
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+ I R P+S+ V +QDT S L+ G
Sbjct: 213 REYLSIARQPISLDVRVGDNQDTEL-SELLEDDG 245
>gi|291566702|dbj|BAI88974.1| group 2 RNA polymerase sigma factor SigB [Arthrospira platensis
NIES-39]
Length = 334
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 134/228 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE ++Q ++ L + + +L + R+PT EW+ GL
Sbjct: 25 DAVRTYLHEIGRVPLLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGL 84
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++ ++ G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 85 SESEMTDIINRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 144
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q+SRTIRLP +I L+K+ +R Q+ +
Sbjct: 145 PMRGYKFSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATP 204
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++A+ + + ++ + +R P+S+ V +QDT Q D +
Sbjct: 205 TEIAKALDLEPSQIRDYLLASRHPVSLDLRVGDNQDTELQDLLEDESA 252
>gi|443309777|ref|ZP_21039464.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780170|gb|ELR90376.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 319
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 135/230 (58%), Gaps = 1/230 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L L+ + L +++G+EPT EWAKA
Sbjct: 8 TDLVRTYLREIGRVPLLTHEQEILYGKQVQRLSALQTVREALLAEYGQEPTPDEWAKASD 67
Query: 314 LS-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
L+ +L + +G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEK
Sbjct: 68 LADSEELAKIIAAGELAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEK 127
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q+ +P
Sbjct: 128 FDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRAP 187
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+LA + +T +++ + R+PLS+ V +QDT D
Sbjct: 188 TAGELATELELTTKQVREYLERARLPLSLDLRVGDNQDTELGELLEDTGA 237
>gi|427419588|ref|ZP_18909771.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425762301|gb|EKV03154.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 391
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 125/213 (58%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ADEE EL Q++ L +E K+ + R PT +E A A+ S D + L S
Sbjct: 93 LLKADEEIELARQVKFLADVEALSKKMGEELKRTPTRLEMANALHCSEADFQHRLQYARS 152
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYWW
Sbjct: 153 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 212
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I + I +RTIRLP +I L+K+ + +R ++ N +P + +LA + +T E+L
Sbjct: 213 IRQGITRTIANDARTIRLPIHIVEKLNKLKKTQRELRKQLNRTPTEAELAAELDLTPEQL 272
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
L + R LS+ V +DT D +
Sbjct: 273 RSLQQVRRKSLSLNHRVGKGEDTELMELLEDGS 305
>gi|409991974|ref|ZP_11275193.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
gi|409937168|gb|EKN78613.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
Length = 332
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 134/228 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE ++Q ++ L + + +L + R+PT EW+ GL
Sbjct: 23 DAVRTYLHEIGRVPLLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGL 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++ ++ G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 83 SESEMTDIINRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 142
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q+SRTIRLP +I L+K+ +R Q+ +
Sbjct: 143 PMRGYKFSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATP 202
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++A+ + + ++ + +R P+S+ V +QDT Q D +
Sbjct: 203 TEIAKALDLEPSQIRDYLLASRHPVSLDLRVGDNQDTELQDLLEDESA 250
>gi|220906009|ref|YP_002481320.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219862620|gb|ACL42959.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 372
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/224 (38%), Positives = 137/224 (61%), Gaps = 2/224 (0%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D D + FL LL EE EL +++ L+ L + K +L Q GR TL E A
Sbjct: 57 GLD--DAVGAFLKDMARYPLLQPSEEIELARRVKYLVELSELKDQLGRQLGRSATLPEVA 114
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
A+ L+ + L+ ++ G ++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++
Sbjct: 115 AAMNLTEQQLQIRIYRGQVAKSKMIRSNLRLVVSIAKRYLNRGVPFLDLVQEGALGLNRA 174
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
EKF P+ G +F++YAYWW+RQ I +AI SRTIRLP +I L+K+ + +R +E
Sbjct: 175 TEKFDPEKGFKFSTYAYWWIRQGITRAIANDSRTIRLPIHIVEKLNKLKKLQRHLKKELQ 234
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+P +++LA + IT+E+L+ L + LS+ + V ++DT
Sbjct: 235 RNPTEQELADALEITLEQLQMLQRARQQALSLNRRVGREEDTEL 278
>gi|422304379|ref|ZP_16391725.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
gi|389790495|emb|CCI13646.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
Length = 416
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 148/267 (55%), Gaps = 40/267 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFRLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P L EW K L+ G ++EK++
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPMLEEWQAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395
+NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455
AI SRTIRLP ++Y +S++ + ++ QE P +E++A ++ +T+EKL +
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RMPLSMQQPVWADQDTTFQSTFLDAAG 482
++P+S++ P+ ++D+ F++A G
Sbjct: 307 QLPISLETPIGKEEDSRL-GDFIEADG 332
>gi|282896368|ref|ZP_06304389.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
gi|281198656|gb|EFA73536.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
Length = 332
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 131/226 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L + K L + R+P+L EWAKA
Sbjct: 22 TDIVRTYLREIGKVPLLTHEQEIYYGKQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQ 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L ++L L G ++ K++ ANLRL+V VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 82 LDPQELNRLLAQGEIAKRKMVEANLRLLVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 141
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + +RTIRLP +I L+K+ +A+R Q SP
Sbjct: 142 DPSKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRDLSQTLGRSPS 201
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA+ + IT +++ + R+PLS+ + + DT D
Sbjct: 202 IAELAQELEITPKQVRDCLEKARLPLSLDLRLGDNYDTELGEMLED 247
>gi|209527735|ref|ZP_03276230.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|209491813|gb|EDZ92173.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
Length = 332
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 133/228 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE ++Q ++ L + + +L + +PT EW+ GL
Sbjct: 23 DAVRTYLHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGL 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++ ++ G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 83 SESEMTEIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 142
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q+SRTIRLP +I L+K+ +R Q+ +
Sbjct: 143 PMRGYKFSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATP 202
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++A+ + + ++ + +R P+S+ V +QDT Q D +
Sbjct: 203 TEIAKALDLEPSQIRDYLLASRHPVSLDLRVGDNQDTELQDLLEDESA 250
>gi|427418169|ref|ZP_18908352.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760882|gb|EKV01735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 319
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 125/203 (61%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E ++ L+ +E K L G EPTL +W+KA L+ +LK + G
Sbjct: 23 LLTPEQEVTFGNAVRTLMTIETIKDGLVGSLGHEPTLEDWSKAANLTIEELKMAVEKGQR 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ +++ ANLRLVV VAK+Y R + + DL+QEG++GL + VEKF P G RF++YAYWW
Sbjct: 83 AKRQMVEANLRLVVSVAKKYLKRNVEILDLIQEGTIGLQRGVEKFDPSKGYRFSTYAYWW 142
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ + +AI + SRT+RLP +I+ ++K+ + +R Q+ S +++A + + +EK+
Sbjct: 143 IRQAMTRAIAEKSRTMRLPIHIHEKINKIKKTQRQLAQQLGRSATFQEIANALDLPLEKV 202
Query: 449 ERLIFITRMPLSMQQPVWADQDT 471
I R PLS+ + +QD
Sbjct: 203 RDCISYNRQPLSLDLRLGDNQDV 225
>gi|67921267|ref|ZP_00514786.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|416403884|ref|ZP_11687612.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
gi|67857384|gb|EAM52624.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|357261629|gb|EHJ10875.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
Length = 414
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 159/300 (53%), Gaps = 48/300 (16%)
Query: 230 VTNHETYNSRKASVKKKLSEGFDR---NDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286
+ ET +RK S ++ + D +R++L +LL A+EE EL +I DL+
Sbjct: 32 IVEPETKKTRKISASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLL 91
Query: 287 RLEKEKSKLQSQFGREPTLIEWAKAI----GLSCR------------------------- 317
+LE+ + L + +EP +W I + R
Sbjct: 92 QLERIREALWEELDQEPNDDQWGHRIFQWENIEQRLCSQKNKEPKWSDIVAELNKAEIIS 151
Query: 318 DL---------------KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEG 362
DL K L+ G +++K++++NLRLVV +AK+Y RG+S DL+QEG
Sbjct: 152 DLEKTWKQQSKAYLPKFKRRLYLGRRAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEG 211
Query: 363 SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKR 422
S+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y +S++ + +
Sbjct: 212 SLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTK 271
Query: 423 LYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
L QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+ F++A G
Sbjct: 272 LLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL-GDFIEADG 330
>gi|186682180|ref|YP_001865376.1| SigH/RpoD family RNA polymerase sigma factor [Nostoc punctiforme
PCC 73102]
gi|186464632|gb|ACC80433.1| RNA polymerase, sigma 70 subunit SigH, RpoD family [Nostoc
punctiforme PCC 73102]
Length = 321
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 135/245 (55%), Gaps = 5/245 (2%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
T++ KAS K + D +R +L LLT ++E ++Q L+ + E K
Sbjct: 5 TFSDTKASNTNKAT-----TDTVRAYLKEIGRIPLLTQEQEIIFAQEVQQLMTILAESEK 59
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
L + R PTL EWA + LS ++L +L+ G ++ K+I ANLRLVV +AKQYQ R +
Sbjct: 60 LTIELKRTPTLSEWANQMQLSEQELLQQLNQGKKAKHKMITANLRLVVSIAKQYQRRNLE 119
Query: 355 LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLL 414
L DL+QEG++GL + VEKF P G RF++YAYWW+RQ I +AI Q R IRLP +I L
Sbjct: 120 LMDLIQEGTLGLERGVEKFNPALGYRFSTYAYWWIRQGITRAIAQQGRAIRLPIHINEKL 179
Query: 415 SKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 474
+K+ +R Q P ++A + + ++ + + +S+ V +++D Q
Sbjct: 180 NKIKRVQRELSQTLGRIPTSTEIANALSLKPSQIREFLLLATRTISLDIRVSSEKDLRLQ 239
Query: 475 STFLD 479
D
Sbjct: 240 DLIED 244
>gi|223998999|ref|XP_002289172.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220974380|gb|EED92709.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 318
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 139/230 (60%), Gaps = 5/230 (2%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI-- 312
D ++ ++ LL +EE L +IQ LI+ E+ + +L+ Q R PT EWA AI
Sbjct: 1 DSMKYYMKTMGNHDLLQKNEEIILAREIQILIKWEEVREELEGQLLRPPTYQEWANAIEP 60
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
G++ +K ++ ++ L +NLRLV+ +AK+YQGRG+++ DL QEG++GL ++ EK
Sbjct: 61 GMTVTQIKKQIRRSLRAKAALTESNLRLVISIAKRYQGRGLNMQDLCQEGTLGLTRACEK 120
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F P+ G RF++YA WW++Q I +AI +RTIRLP +I+ LS V +A+R E
Sbjct: 121 FDPERGFRFSTYATWWIKQGIMRAIADQARTIRLPVHIHDQLSIVRKAERDLQNELGRDA 180
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPV---WADQDTTFQSTFLD 479
KE++A +VG+ +K+E L + +SM+Q + +++ T Q T D
Sbjct: 181 TKEEVAAKVGMKPDKIEFLKRASVGSISMEQELGTSGSERSFTIQDTLGD 230
>gi|326518320|dbj|BAJ88189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326533296|dbj|BAJ93620.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 552
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 138/238 (57%), Gaps = 2/238 (0%)
Query: 242 SVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGR 301
S KKK S+G +PL LW RKLLTA EE EL IQDL++LE + +L G
Sbjct: 225 SSKKKRSKGPSTMNPLG-SLWKMTGRKLLTAKEEVELSNGIQDLLKLEAIQGELAEYNGG 283
Query: 302 EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQE 361
+PT +WA A G L+ L G + +++ +N+RLV+ +A++++G G+ L+DL+QE
Sbjct: 284 QPTFPQWAAAAGTDENTLRKRLDHGIHCKNRMVTSNVRLVISIAREFEGPGLELYDLIQE 343
Query: 362 GSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAK 421
G GL++ EKF G RF++Y++WW++Q +RK++ + ++ RLP ++ +V E
Sbjct: 344 GMQGLIRGAEKFDASKGFRFSTYSHWWIKQAMRKSVSEQTQIFRLPAHMVEASYRVKECT 403
Query: 422 RLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+ ++ P E++A +G+ V+++E + + + +S+ + D T+Q D
Sbjct: 404 KRLRRKLKRRPSNEEIAVDIGMPVKRVEAAVSLPKYSVSLDSKI-GSTDMTYQEVTAD 460
>gi|22297808|ref|NP_681055.1| RNA polymerase sigma factor SigD [Thermosynechococcus elongatus
BP-1]
gi|22293985|dbj|BAC07817.1| group2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 315
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 133/227 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q L + + + KL ++ REPT EWA A +
Sbjct: 6 DLVRTYLREIGRVPLLTHEQEVIYGKQVQQLAAMNEIREKLAAELNREPTRAEWAAAANI 65
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L++ + +G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 66 SEGELETIIENGERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFD 125
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q +
Sbjct: 126 PTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATI 185
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA + +T ++ + R PLS+ V +QDT D++
Sbjct: 186 NELAAELELTPAQVREYLERARQPLSLDVRVGDNQDTELGELLEDSS 232
>gi|425439972|ref|ZP_18820283.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
gi|389719676|emb|CCH96511.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
Length = 416
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 148/267 (55%), Gaps = 40/267 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P L EW K L+ G ++EK++
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPMLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395
+NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455
AI SRTIRLP ++Y +S++ + ++ QE P +E++A ++ +T+EKL +
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RMPLSMQQPVWADQDTTFQSTFLDAAG 482
++P+S++ P+ ++D+ F++A G
Sbjct: 307 QLPISLETPIGKEEDSRL-GDFIEADG 332
>gi|443311220|ref|ZP_21040852.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778750|gb|ELR89011.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 383
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 137/231 (59%)
Query: 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKA 311
D +D + F LL ADEE EL ++Q L+ ++ + L S+ R T E A A
Sbjct: 68 DSDDAVGAFFKEMARYPLLKADEEVELAKRVQFLVEVDNLQESLSSKLNRRATQAETAAA 127
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
GL+ R L+ +L+ G ++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ E
Sbjct: 128 FGLTERQLEQKLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVQFLDLIQEGAMGLNRATE 187
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHS 431
KF P G +F++YAYWW+RQ I +AI +RTIRLP +I L+K+ +A+R Q+ + +
Sbjct: 188 KFDPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQREIKQKLHRN 247
Query: 432 PDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+ +LA+ + T E+L +L + R LS+ V ++DT D G
Sbjct: 248 ATENELAQALDTTPEQLRQLQQLRRKSLSLNHRVGKEEDTELVDLLEDEDG 298
>gi|169883526|gb|ACA97858.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
Length = 416
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 148/267 (55%), Gaps = 40/267 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P L EW K L+ G ++EK++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395
+NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455
AI SRTIRLP ++Y +S++ + ++ QE P +E++A ++ +T+EKL +
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RMPLSMQQPVWADQDTTFQSTFLDAAG 482
++P+S++ P+ ++D+ F++A G
Sbjct: 307 QLPISLETPIGKEEDSRL-GDFIEADG 332
>gi|425438187|ref|ZP_18818593.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|425444152|ref|ZP_18824209.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|425449157|ref|ZP_18829000.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|425462821|ref|ZP_18842288.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
gi|1710685|sp|P52322.1|RPOD_MICAE RecName: Full=RNA polymerase sigma factor rpoD1
gi|786173|dbj|BAA08853.1| sigma factor [Microcystis aeruginosa]
gi|1783286|dbj|BAA12850.1| principal sigma factor [Microcystis aeruginosa]
gi|389676661|emb|CCH94329.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|389730582|emb|CCI05187.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|389764330|emb|CCI09341.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|389824092|emb|CCI27286.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
Length = 416
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 148/267 (55%), Gaps = 40/267 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P L EW K L+ G ++EK++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395
+NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455
AI SRTIRLP ++Y +S++ + ++ QE P +E++A ++ +T+EKL +
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RMPLSMQQPVWADQDTTFQSTFLDAAG 482
++P+S++ P+ ++D+ F++A G
Sbjct: 307 QLPISLETPIGKEEDSRL-GDFIEADG 332
>gi|425454830|ref|ZP_18834556.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
gi|159026614|emb|CAO86546.1| rpoD1 [Microcystis aeruginosa PCC 7806]
gi|389804393|emb|CCI16640.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
Length = 416
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 148/267 (55%), Gaps = 40/267 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P L EW K L+ G ++EK++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395
+NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455
AI SRTIRLP ++Y +S++ + ++ QE P +E++A ++ +T+EKL +
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RMPLSMQQPVWADQDTTFQSTFLDAAG 482
++P+S++ P+ ++D+ F++A G
Sbjct: 307 QLPISLETPIGKEEDSRL-GDFIEADG 332
>gi|423067023|ref|ZP_17055813.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406711309|gb|EKD06510.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 394
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 132/225 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE ++Q ++ L + + +L + +PT EW+ GL
Sbjct: 85 DAVRTYLHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGL 144
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++ ++ G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 145 SESEMTEIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 204
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q+SRTIRLP +I L+K+ +R Q+ +
Sbjct: 205 PMRGYKFSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATP 264
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A+ + + ++ + +R P+S+ V +QDT Q D
Sbjct: 265 TEIAKALDLEPSQIRDYLLASRHPVSLDLRVGDNQDTELQDLLED 309
>gi|220907205|ref|YP_002482516.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863816|gb|ACL44155.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 455
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 137/262 (52%), Gaps = 42/262 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ----------------- 296
D +RL+L +LL DEE ++Q +RL + + ++Q
Sbjct: 99 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYMRLVELRDQVQADHQPIQQYVHLIDIHD 158
Query: 297 ---SQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------------------SRE 331
+Q G P L WA+ G+ LK+ L G ++E
Sbjct: 159 RLAAQLGHRPPLERWAREAGVVAGQLKTLLAEGKQAWATAIGMMVGELDQIQKEGVRAKE 218
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
+I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+RQ
Sbjct: 219 HMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 278
Query: 392 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451
I +AI SRTIRLP +I L+K+ +A+R QE H+P ED+A + +TV ++ L
Sbjct: 279 GITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGHTPSIEDIATELEMTVPQVREL 338
Query: 452 IFITRMPLSMQQPVWADQDTTF 473
+ +S++ V D+DT
Sbjct: 339 LVRVPRSVSLETKVGKDKDTEL 360
>gi|427712306|ref|YP_007060930.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376435|gb|AFY60387.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 318
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 129/225 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q L L + ++ L++ GREP+L EWA L
Sbjct: 9 DLVRTYLREIGRVPLLTHEQEILYGKQVQMLASLNETRTGLETALGREPSLEEWASQANL 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L + G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 SPGELNEIIQGGERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q +
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQSLGRAATI 188
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA + +T ++ + R PLS+ V +QDT D
Sbjct: 189 NELAVELELTPAQVREYLERARQPLSLDVRVGDNQDTELGELLED 233
>gi|427733998|ref|YP_007053542.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369039|gb|AFY52995.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 322
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 130/225 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE Q+ L+ K L ++F R+PTL EWA+ L
Sbjct: 13 DLVRTYLREIGRVPLLTHEEEILFGKQVHRATVLQSLKESLTNEFNRQPTLDEWAERAKL 72
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+DL+ + G ++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 73 EPQDLEEAIEKGEVAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFD 132
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q +
Sbjct: 133 PSKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATI 192
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LA+ + +T +++ + R+PLS+ + + DT D
Sbjct: 193 SELAQELDLTPKQVREYLEKARVPLSLDLRLGDNYDTELGEMLED 237
>gi|6463980|dbj|BAA86957.1| group 2 sigma factor RpoD3 [Synechococcus sp. PCC 7942]
Length = 320
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 138/221 (62%), Gaps = 2/221 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAI 312
+D +R +L LLT +EE L ++Q ++L++ + LQS+ G R+P+ +EWA A
Sbjct: 9 SDLVRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAA 68
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
GLS +L+ + H G ++ K+I ANLRLVV VAK+Y R + L DL+QEG++G+ + VEK
Sbjct: 69 GLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEK 128
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F P G RF++YAYWW+RQ I +AI + +RTIRLP +I L+K+ + +R Q+ + +
Sbjct: 129 FDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLSTAT 188
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
E LA + +T ++ + R PLS+ V +QDT
Sbjct: 189 LPE-LAAALDLTPAQVRDYLEKARHPLSLDLRVGDNQDTEL 228
>gi|254430889|ref|ZP_05044592.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
gi|197625342|gb|EDY37901.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
Length = 327
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 131/226 (57%), Gaps = 8/226 (3%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+RL+L LL +EE L RL +E+ +L Q G + L WA G
Sbjct: 19 SDPIRLYLREIGRVDLLRQEEEILLA-------RLVQEREELLRQRG-DGELTAWAGRCG 70
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ DL+ LH G ++E+++ ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VE++
Sbjct: 71 VPPADLRQALHRGRRAKERMLQANLRLVVAVAKKYQRRGLDLLDLIQEGTLGLERAVERY 130
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P+ G RF++YAYWW+RQ I +A+ SRTIRLP ++ L+++ + +E P
Sbjct: 131 DPRRGFRFSTYAYWWIRQGITRALASQSRTIRLPVHVTETLNRIRTCQGELTREHGRQPT 190
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+LAR VG+ +L + P+S++ V A+ DT D
Sbjct: 191 LAELARAVGLDEARLRSTLAHIPRPVSLEGRVGANADTPLVDLLED 236
>gi|414079421|ref|YP_007000845.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
gi|413972700|gb|AFW96788.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
Length = 327
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 130/225 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E Q+Q ++ L + K L+ + EP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLSREQEIIYGKQVQQMMALLEAKEALRKEIDHEPSLSEWAARVNQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 SETELNHLMVQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q RTIRLP +I L+K+ + +R Q SP
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPTP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A+ + + ++ + + R P+S+ V +QDT Q D
Sbjct: 198 TEIAKELELEPAQIREYLNMARQPVSLDVRVGENQDTELQEMLED 242
>gi|254423226|ref|ZP_05036944.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190715|gb|EDX85679.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 431
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 120/210 (57%), Gaps = 22/210 (10%)
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSEL---------------------- 323
+ L +++L +Q G P+L WAKA G+ DLK L
Sbjct: 127 VHLLNTRARLTAQLGHRPSLERWAKASGVDMPDLKPTLAQGKRLWAEIAGMSVEEIVEIQ 186
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++
Sbjct: 187 NEGTRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFST 246
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGI 443
YAYWW+RQ I +AI SRTIRLP +I L+K+ +A+R Q + ED+A+ + +
Sbjct: 247 YAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQTQGRTAKAEDIAKELDM 306
Query: 444 TVEKLERLIFITRMPLSMQQPVWADQDTTF 473
TV ++ ++ +S+ V D+DT
Sbjct: 307 TVAQIREVLLKVPRSVSLDTKVGKDRDTEL 336
>gi|307153454|ref|YP_003888838.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306983682|gb|ADN15563.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 372
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 123/179 (68%), Gaps = 1/179 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL +EE EL ++ L+ E+++ +LQ Q R P+ +EWA+A+GL R L++ L+ G
Sbjct: 73 LLKPEEEIELAYTVKFLMESEEKRQELQVQLERPPSKLEWAQAMGLKNERQLENRLYRGR 132
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 133 AAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 192
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
W+RQ I + I +RTIRLP +I L+K+ +A+R+ Q+ + +P +++LA+ + I E
Sbjct: 193 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRVLKQQLHRNPTEQELAQALEIDCE 251
>gi|218440063|ref|YP_002378392.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172791|gb|ACK71524.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 372
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 122/179 (68%), Gaps = 1/179 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL +EE EL ++ L+ E+++ +LQ R PT +EWA+A+GL R L++ L+ G
Sbjct: 73 LLKPEEEIELAYTVKFLMESEEKRQQLQIDLQRPPTKLEWAQAMGLQNERQLENRLYRGR 132
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
S++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 133 SAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 192
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
W+RQ I + I +RTIRLP +I L+K+ +A+R+ Q+ + +P +++LA+ + + E
Sbjct: 193 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRVLKQQLHRNPTEKELAQALEVDAE 251
>gi|425472577|ref|ZP_18851418.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
gi|389881323|emb|CCI38113.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
Length = 416
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 148/267 (55%), Gaps = 40/267 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P + EW K L+ G ++EK++
Sbjct: 127 RIIAEKSEKEPKLSDIKAYLGKTELTAPMVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395
+NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455
AI SRTIRLP ++Y +S++ + ++ QE P +E++A ++ +T+EKL +
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RMPLSMQQPVWADQDTTFQSTFLDAAG 482
++P+S++ P+ ++D+ F++A G
Sbjct: 307 QLPISLETPIGKEEDSRL-GDFIEADG 332
>gi|434395299|ref|YP_007130246.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267140|gb|AFZ33086.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 318
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 130/228 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L++ K L +Q REPTL EWA + G
Sbjct: 8 TDLVRTYLREIGRVPLLTHEQEILYGKQVQRSTALQEIKESLSAQLNREPTLEEWAASAG 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L +L + G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 LESAELSKAIALGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q+ +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQQLGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA + ++ +++ + R+PLS+ V + DT D
Sbjct: 188 VSELAAELELSPKQVREYLERARLPLSLDLRVGDNHDTELGELLEDTG 235
>gi|428301225|ref|YP_007139531.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237769|gb|AFZ03559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 318
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 130/229 (56%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LL+ +EE + Q+Q + L + + L + G EPTL EWA A
Sbjct: 8 TDLVRTYLREIGKVPLLSHEEEIKFGKQVQRAVVLNEVRESLALKLGHEPTLEEWAIASE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L +L + + ++ +++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 68 LEPLELNQAIADADEAKRRMVEANLRLVVSVAKKYLKRNVDLLDLIQEGSIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q+ +P
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRAPS 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+LA+ + +T ++ + R+PLS+ + + DT D
Sbjct: 188 AGELAKELDLTPAQVREYLEKARLPLSLDLRLGDNHDTELGEMLEDTGA 236
>gi|411116559|ref|ZP_11389046.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410712662|gb|EKQ70163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 327
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 138/239 (57%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A+ K K ++ D +R +L +LT ++E Q+Q ++ L+++K L +
Sbjct: 4 ANAKPKAAKSTFTADMVRTYLHEIGRVPMLTHEQEIIYGKQVQQMMALQEKKEALAKKLN 63
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
REPT E A LS +LK +H G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 64 REPTDAELASHTNLSEDELKGIMHRGRRAKQKMIEANLRLVVSIAKKYQKRNLEFLDLIQ 123
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 420
EG+MGL + VEKF P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +
Sbjct: 124 EGTMGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKV 183
Query: 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+R Q+ + ++A + + ++ + + R P+S+ V +QDT Q D
Sbjct: 184 QRELSQKLGRAASAAEIAEALELEPAQIREFLIMARQPVSLDLRVGDNQDTELQDLLED 242
>gi|148241197|ref|YP_001226354.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147849507|emb|CAK27001.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 324
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 132/205 (64%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+Q+L+RLE+ +++ + + G EP+ E A + G+S L+ L +G
Sbjct: 29 LLSHEQEITLGRQVQELVRLEEAEAEFKMRQGHEPSREELASSFGISPAVLRRRLINGRR 88
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 89 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 148
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI + SRTIRLP +I L+K+ + +R QE +P +LA + + ++
Sbjct: 149 IRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTVGELAEFLELPEPEV 208
Query: 449 ERLIFITRMPLSMQQPVWADQDTTF 473
+ L+ R P+S++ V DT
Sbjct: 209 KDLLSRARQPVSLEMKVGDSDDTEL 233
>gi|359458359|ref|ZP_09246922.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 121/203 (59%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL +EE Q+Q I L+ K LQ+ REPTL EWA LS L+ EL G+
Sbjct: 23 LLNHEEEIIFGKQVQRFIALQDLKQDLQADLDREPTLTEWADKAELSISQLQKELKLGHK 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+ K++ +NLRLVV +AK+Y + DL+QEG++GL + VEKF P G RF++YAYWW
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYAYWW 142
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ + +AI + RTIRLP +I LSK+ + +R Q+ + P ++LA + +T +K+
Sbjct: 143 IRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTIQELAVEMDLTPKKI 202
Query: 449 ERLIFITRMPLSMQQPVWADQDT 471
E + R +S+ + Q+T
Sbjct: 203 EDYLNYARRSISLDIQIGDQQNT 225
>gi|425437461|ref|ZP_18817876.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440756281|ref|ZP_20935482.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
gi|169883528|gb|ACA97859.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
gi|389677539|emb|CCH93515.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440173503|gb|ELP52961.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
Length = 377
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 119/179 (66%), Gaps = 1/179 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL+A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
W+RQ I + I +RTIRLP +I L+K+ +A+R+ Q+ +P++ +LA + IT E
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAEALEITPE 256
>gi|390438739|ref|ZP_10227182.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
gi|389837853|emb|CCI31306.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
Length = 416
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 148/267 (55%), Gaps = 40/267 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFRLYTDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P + EW K L+ G ++EK++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395
+NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455
AI SRTIRLP ++Y +S++ + ++ QE P +E++A ++ +T+EKL +
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RMPLSMQQPVWADQDTTFQSTFLDAAG 482
++P+S++ P+ ++D+ F++A G
Sbjct: 307 QLPISLETPIGKEEDSRL-GDFIEADG 332
>gi|254409611|ref|ZP_05023392.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196183608|gb|EDX78591.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 374
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 116/176 (65%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL +EE EL Q+Q L+ +++ +L + GR+PT E A+A+ L+ R ++ L+ G
Sbjct: 76 LLKPEEEIELATQVQFLVEMDEMTERLHQELGRKPTNAELAQALDLTERQFENRLYRGQI 135
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
S+ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYWW
Sbjct: 136 SKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPAKGYKFSTYAYWW 195
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGIT 444
+RQ I + I +RTIRLP +I L+K+ + +R Q+ +PD+ +LA + I+
Sbjct: 196 IRQAITRTIANDARTIRLPIHIVEKLNKLKKVQRELKQKLQRTPDETELAEALDIS 251
>gi|166368188|ref|YP_001660461.1| RNA polymerase sigma factor RpoD [Microcystis aeruginosa NIES-843]
gi|425464857|ref|ZP_18844167.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
gi|166090561|dbj|BAG05269.1| principal RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|389833005|emb|CCI22864.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
Length = 416
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 148/267 (55%), Gaps = 40/267 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P + EW K L+ G ++EK++
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395
+NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455
AI SRTIRLP ++Y +S++ + ++ QE P +E++A ++ +T+EKL +
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 456 RMPLSMQQPVWADQDTTFQSTFLDAAG 482
++P+S++ P+ ++D+ F++A G
Sbjct: 307 QLPISLETPIGKEEDSRL-GDFIEADG 332
>gi|428208314|ref|YP_007092667.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010235|gb|AFY88798.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 318
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 133/228 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L L + +L ++ GREPTL EW++A
Sbjct: 8 TDLVRTYLREIGRVPLLTHEQEIVYGKQVQRLSTLYALQEELVAKLGREPTLEEWSEAAR 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ L + + G ++ +++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 IDKTALSTAIAEGEIAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + RTIRLP +I L+K+ +A+R Q +P
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQNLGRAPS 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA + +T +++ + R+PLS+ V +QDT D +
Sbjct: 188 IVELATALELTPKQVREYLERARLPLSLDLRVGDNQDTELGELLEDTS 235
>gi|298490014|ref|YP_003720191.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231932|gb|ADI63068.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 332
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 130/229 (56%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q G +PTL EWA +
Sbjct: 22 TDLVRTYLREIGRVPLLTHEEEIHYGKQVQRCTTLYEVRENLATQLGYQPTLEEWAASAQ 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ +L + + G ++ +++ ANLRLVV VAK+Y R I L DL+QEGS+G+ + VEKF
Sbjct: 82 VEPVELNTAIAEGEIAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGSIGMQRGVEKF 141
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + +RTIRLP +I L+K+ +A+R Q+ +P
Sbjct: 142 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPT 201
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+LA + +T ++ + R+PLS+ + + DT D
Sbjct: 202 AIELADELELTPRQVRECLEKARLPLSLDLRLGDNYDTELGEMLEDTGA 250
>gi|332708935|ref|ZP_08428906.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352477|gb|EGJ32046.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651118|gb|AEE81160.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 333
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 128/225 (56%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L EK+ L + REPT EWA +
Sbjct: 24 DMVRTYLHEIGRVPLLTHEQEIVYGKQVQQMMALLGEKATLAQELEREPTTEEWASYVNK 83
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +LK + G ++ K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 84 SEAELKKAIDQGTRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 143
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +R IRLP +I L+K+ + +R Q +
Sbjct: 144 PTRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELSQTLGRNATP 203
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A+ + + ++ + I R P+S+ V +QDT D
Sbjct: 204 TEIAKELDLEPAQIREYLSIARQPISLDVRVGDNQDTELSELLED 248
>gi|194476921|ref|YP_002049100.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
gi|171191928|gb|ACB42890.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
Length = 321
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 135/205 (65%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q+LI +++ + KL+ + G +PT E A ++ LS +K ++ G
Sbjct: 27 LLTHEQEITLGRQVQELICIQETEQKLELKNGIKPTQEELANSLDLSINQVKRKIIHGKR 86
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E+++++NLRLVV +AK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 87 AKEQMVSSNLRLVVSIAKKYTKRSMELLDLVQEGTIGLIRGVEKFDPTRGYKFSTYAYWW 146
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI + SRTIRLP +I L+K+ +A+R Q +P +LA+ + +T +++
Sbjct: 147 IRQGITRAISEQSRTIRLPIHITEELNKLKKAQRDLSQSLGRTPTVIELAKMIKLTEKEV 206
Query: 449 ERLIFITRMPLSMQQPVWADQDTTF 473
+ L+ + P+S++ + DT
Sbjct: 207 KELLCHAKQPVSLEMKIGDGDDTVL 231
>gi|428772429|ref|YP_007164217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686708|gb|AFZ46568.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 363
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 124/198 (62%), Gaps = 1/198 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LLTA+EE +L ++ L E+ + KL + R P+ +E A A+GL R L + L+ G
Sbjct: 64 LLTAEEEVDLAQSVKFLTDCEETQQKLHHKLQRTPSKMELAHAMGLETERQLDNRLYKGR 123
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 124 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 183
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQ I + I SRTIRLP +I L+K+ +A+R Q +P + +LA +GI +
Sbjct: 184 WIRQAITRTIANDSRTIRLPIHIVEKLNKLKKAQRELKQSLQRNPTEVELAEEMGINEQA 243
Query: 448 LERLIFITRMPLSMQQPV 465
L +L+ + R LS+ V
Sbjct: 244 LHQLLQLKRQSLSLNHRV 261
>gi|425464726|ref|ZP_18844036.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
gi|389833185|emb|CCI22530.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
Length = 377
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 118/179 (65%), Gaps = 1/179 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWANALQLDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
W+RQ I + I +RTIRLP +I L+K+ +A+R+ Q+ +P++ +LA + +T E
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAEALEMTPE 256
>gi|414077761|ref|YP_006997079.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
gi|413971177|gb|AFW95266.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
Length = 318
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 130/229 (56%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q G EPT+ EWA A
Sbjct: 8 TDLVRTYLREIGRVPLLTHEEEIFYGKQVQRSTALHEIREGLAAQLGHEPTVEEWAAASD 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ +L + G ++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 68 IEVSELNQAIAVGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + +RTIRLP +I L+K+ +A+R Q +P
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQGLGRAPT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+L++ + +T +++ + R+PLS+ + + DT D
Sbjct: 188 VAELSQELDLTPKQVREYLEKARLPLSLDLRLGDNYDTELGEMLEDTGA 236
>gi|166368031|ref|YP_001660304.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|166090404|dbj|BAG05112.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 377
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 119/179 (66%), Gaps = 1/179 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL+A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWASALQLDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
W+RQ I + I +RTIRLP +I L+K+ +A+R+ Q+ +P++ +LA + +T E
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAEALEMTPE 256
>gi|32351878|dbj|BAC78528.1| plastid sigma factor 2A [Oryza sativa Japonica Group]
Length = 564
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 149/267 (55%), Gaps = 3/267 (1%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRN-DPLRLFLWGPETRKLLTA 272
R E R+++ + + T T S KKK S+G +PL LW R+LLTA
Sbjct: 208 RQTEGRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLG-SLWKMTGRRLLTA 266
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE E IQDL++LE +++L G +PT +WA A G+ R L+ L G + +
Sbjct: 267 KEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDHGIYCKNR 326
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
++ +N+RLV+ +A++++G G+ L+DL+QEG GL++ EKF G RF++Y++WW++Q
Sbjct: 327 MVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIKQA 386
Query: 393 IRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLI 452
+RK++ + S+ RLP ++ +V E + ++ P E++A G+ ++++E +
Sbjct: 387 MRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRVEAAV 446
Query: 453 FITRMPLSMQQPVWADQDTTFQSTFLD 479
+ + +S+ + D T+Q D
Sbjct: 447 NLPKYSVSLDSKI-GSTDMTYQEVTAD 472
>gi|428309492|ref|YP_007120469.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428251104|gb|AFZ17063.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 377
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 142/237 (59%), Gaps = 5/237 (2%)
Query: 213 PRFLERRSKKRKVSKPQVT--NHETYNSRKASVKKKLSEGFDR---NDPLRLFLWGPETR 267
P F + + + +P +T E +S+ A + S G+ + +D + F
Sbjct: 18 PEFFNNDNLELETEEPDLTLVEVEFSDSKNALTTSRRSSGYSKTSSDDTVGAFFKEMARY 77
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
LL +EE +L +Q L+ +++ + +LQ+ GR+P E A+ + ++ R L++ L+ G
Sbjct: 78 PLLKPEEEVDLAKNVQFLVEIDQLQERLQANLGRKPAKAELAQQLNMTERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P+ G +F++YAYW
Sbjct: 138 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPEKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGIT 444
W+RQ I + I +RTIRLP +I L+K+ +A+R Q +P++E+LA+ + IT
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRELKQGLQRNPNEEELAKALEIT 254
>gi|428226816|ref|YP_007110913.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
gi|427986717|gb|AFY67861.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
Length = 414
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 151/295 (51%), Gaps = 30/295 (10%)
Query: 201 GYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLF 260
G L E+++ P L++R +R ++ E R +++SE +RL
Sbjct: 33 GTSLNELEELVHPDGLQKRPGRRTTDLVRMYLQEIGRVRLLGRDEEVSEAQQVQRYMRLL 92
Query: 261 LWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
E R E IQ +++ + + L S G P+L WA+A G+ +LK
Sbjct: 93 ----ELRDEAAQAEG----GTIQRYVQIIEARDTLTSHLGHRPSLERWAEAAGVDVTELK 144
Query: 321 SELHSGNS----------------------SREKLINANLRLVVHVAKQYQGRGISLHDL 358
L SG ++E +I ANLRLVV VAK+YQ RG+ L DL
Sbjct: 145 PILASGKQRWAELTGLTIQELEQIQREGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDL 204
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVL 418
+QEG++GL ++VEKF P G RF++YAYWW+RQ I +AI SRTIRLP +I L+K+
Sbjct: 205 IQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIK 264
Query: 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+A+R QE +P ED+AR + +T ++ ++ +S++ V ++DT
Sbjct: 265 KAQRKISQEKGRTPTIEDIARELEMTSPQVREVLLRVPRSVSLETKVGKEKDTEL 319
>gi|425452501|ref|ZP_18832318.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|425460781|ref|ZP_18840262.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443669300|ref|ZP_21134532.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
gi|159029420|emb|CAO90796.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389765706|emb|CCI08495.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|389826523|emb|CCI22935.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443330428|gb|ELS45144.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
Length = 377
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 119/179 (66%), Gaps = 1/179 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL+A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLSAEEEIELAYLVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
W+RQ I + I +RTIRLP +I L+K+ +A+R+ Q+ +P++ +LA + IT E
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAEALEITPE 256
>gi|318040801|ref|ZP_07972757.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CB0101]
Length = 381
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 144/271 (53%), Gaps = 46/271 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ--------------------DLIRLEKEKS 293
D +RL+L LL+ +EE L Q+Q +LI LE ++
Sbjct: 19 TDLVRLYLQDIGRVDLLSHEEELTLARQVQRRERLLRERRRLAATHPALQELIDLEDDQQ 78
Query: 294 KLQSQFGREPTLIE----------------------WAKAIGLSCRDLKSELHSGNSSRE 331
+L SQ G P + + WA+ LS +LK LH G +R+
Sbjct: 79 RLASQLGHWPAVQQLAEQQRCTVSELREQIRQKQQAWAEHSNLSVAELKQALHHGRRARD 138
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEK+ P G RF++YAYWW+RQ
Sbjct: 139 RMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKYDPTRGFRFSTYAYWWIRQ 198
Query: 392 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451
I +AI SRTIRLP ++ L+++ +A+R E DLAR +G++ E++ RL
Sbjct: 199 GITRAIATQSRTIRLPVHVTEKLNRIKKAQRQIATEHGRLASVSDLARELGLS-EEVVRL 257
Query: 452 IFITRMP--LSMQQPVWADQDTTFQSTFLDA 480
+ R+P +S+ V +QDT D+
Sbjct: 258 TLM-RVPRSVSLDTRVGREQDTQLGDLLEDS 287
>gi|428204671|ref|YP_007083260.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427982103|gb|AFY79703.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 318
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 141/232 (60%), Gaps = 2/232 (0%)
Query: 252 DRN--DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
D+N DP+R +L LLT +EE ++Q L+ LE K L+ + G+EPT EWA
Sbjct: 4 DKNFTDPVRAYLREIGRVPLLTHEEEIHYAKRVQRLVVLENLKESLKQKLGKEPTDSEWA 63
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
A L+ +L++ + +G++++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ +
Sbjct: 64 AAAELTEAELRNCIAAGDAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTLGMQRG 123
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
VEKF P G RF++YAYWW+RQ I +AI + SRTIRLP +I L+K+ +A+R QE
Sbjct: 124 VEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQENG 183
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+ +LA+ + +T +++ + R PLS+ V + DT D
Sbjct: 184 RAATIAELAQELELTPKQVREYLERARQPLSLDLRVGDNHDTELGELLEDTG 235
>gi|422301798|ref|ZP_16389163.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
gi|389789168|emb|CCI14818.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
Length = 377
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 119/179 (66%), Gaps = 1/179 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
W+RQ I + I +RTIRLP +I L+K+ +A+R+ Q+ +P++ +LA+ + +T E
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAQALEMTPE 256
>gi|425447335|ref|ZP_18827325.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
gi|389732113|emb|CCI03895.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
Length = 377
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 119/179 (66%), Gaps = 1/179 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL+A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
W+RQ I + I +RTIRLP +I L+K+ +A+R+ Q+ +P++ +LA + +T E
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAEALEMTPE 256
>gi|170077819|ref|YP_001734457.1| sigma-70 factor [Synechococcus sp. PCC 7002]
gi|169885488|gb|ACA99201.1| sigma-70 factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 139/242 (57%)
Query: 240 KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 299
K ++++ + G D +R +L LLT +EE Q+Q L+ L++++ L+
Sbjct: 3 KVNLQQAPNNGKSSADMVRTYLREIGRVPLLTHEEEIVYGKQVQRLMALQEKRQTLEESL 62
Query: 300 GREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
RE T EWA+A L+ + L+ +L G ++ K+I ANLRLVV +AK+YQ R + DL+
Sbjct: 63 DREATREEWAEAAQLTPKQLQRDLQIGERAKRKMIEANLRLVVAIAKKYQKRNLEFLDLI 122
Query: 360 QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLE 419
QEGS+GL + VEKF P G +F++YAYWW+RQ I +AI Q RTIRLP +I L+K+ +
Sbjct: 123 QEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKK 182
Query: 420 AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+R Q+ + ++A + + ++ ++R P+S+ V +QDT D
Sbjct: 183 TQRQLAQDLGRAATIAEIAEALELEPAQIREYFRVSRHPISLDVRVGDNQDTELMDLLED 242
Query: 480 AA 481
+
Sbjct: 243 SG 244
>gi|255076341|ref|XP_002501845.1| predicted protein [Micromonas sp. RCC299]
gi|226517109|gb|ACO63103.1| predicted protein [Micromonas sp. RCC299]
Length = 595
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 146/245 (59%), Gaps = 4/245 (1%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R + +K ++ + D ++ +L T LLT EE EL +IQDL+ L +L+ +
Sbjct: 254 RNRRIARKNADTKKQTDSMKTYLKDIGTVSLLTGAEEVELAKRIQDLMYLNSVCERLEEE 313
Query: 299 -FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
G+EPT WA ++ ++L+ L G ++ +I ANLRLVV +AK+Y + +S D
Sbjct: 314 NGGKEPTRFMWAIECNITEQELERRLEEGKRAKNAMIQANLRLVVSIAKRYANKSMSFQD 373
Query: 358 LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKV 417
L+QEG +GL++ EKF + G +F++YA+WW+RQ + ++I SRTIRLP +++ ++S++
Sbjct: 374 LIQEGCVGLIRGAEKFDFKRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRM 433
Query: 418 LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPV---WADQDTTFQ 474
+ +R + + P E+LA + +TVEK++++ + +P+S+ Q V + T +
Sbjct: 434 SKVERQMVLKLGRDPTHEELADAMEMTVEKIKQIKKASLVPISLSQTVNNSNGEDKRTVE 493
Query: 475 STFLD 479
T +D
Sbjct: 494 DTLID 498
>gi|119512139|ref|ZP_01631231.1| RNA polymerase sigma-like factor [Nodularia spumigena CCY9414]
gi|119463229|gb|EAW44174.1| RNA polymerase sigma-like factor [Nodularia spumigena CCY9414]
Length = 442
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 25/224 (11%)
Query: 272 ADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN---- 327
A E E++A +L+++++ +L S+ G P+L WA G+ DLK L +G
Sbjct: 127 AKEGDEIVAPFLNLVQVQE---RLTSELGHRPSLERWANTAGIELVDLKPTLANGKRRWA 183
Query: 328 ------------------SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++
Sbjct: 184 EIAQLTVEELEQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERA 243
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
VEKF P G RF++YAYWW+RQ I +AI SRTIRLP +I L+K+ +A+R QE
Sbjct: 244 VEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKG 303
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+P EDLA + +T ++ ++ +S++ V D+DT
Sbjct: 304 RTPTLEDLAIELEMTPTQVREVLLKVPRSVSLETKVGKDKDTEL 347
>gi|298490007|ref|YP_003720184.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231925|gb|ADI63061.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 417
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 135/263 (51%), Gaps = 43/263 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q +RL + +
Sbjct: 60 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLRLRIVLANAAKQGDTVIVPYQRLIEVQ 119
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P+L WAK G+ DLK L G ++
Sbjct: 120 ERLSSELGHRPSLERWAKTAGIDLADLKPTLLEGKRRWAEIAKLKVEELENVQSQGLQAK 179
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 180 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 239
Query: 391 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450
Q I +AI SRTIRLP +I L+K+ +A+R QE +P EDLA + +T ++
Sbjct: 240 QGITRAIATSSRTIRLPVHITEKLNKIKKAQRKISQEKGRTPTLEDLAIELDMTPTQVRE 299
Query: 451 LIFITRMPLSMQQPVWADQDTTF 473
++ +S++ V D+DT
Sbjct: 300 VLLRVPRSVSLETKVGKDKDTEL 322
>gi|425469001|ref|ZP_18847970.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
gi|389884193|emb|CCI35494.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
Length = 377
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 118/179 (65%), Gaps = 1/179 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
W+RQ I + I +RTIRLP +I L+K+ +A+R+ Q+ +P++ +LA + +T E
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAEALEMTPE 256
>gi|443316869|ref|ZP_21046297.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783541|gb|ELR93453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 443
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 122/214 (57%), Gaps = 22/214 (10%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS------------- 328
++ + L + +L S G P+L WA+ G+S DLK L SG
Sbjct: 135 LERYVHLMDTRDRLTSHLGHRPSLERWAETAGISVVDLKPTLSSGKRHWAELASLTVAEL 194
Query: 329 ---------SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G
Sbjct: 195 EEAIREGLRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGY 254
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLAR 439
RF++YAYWW+RQ I +AI SRTIRLP +I L+K+ +A+R Q+ +P +D+AR
Sbjct: 255 RFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQDQGRTPTLDDVAR 314
Query: 440 RVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+ +T ++ ++ +S++ V ++DT
Sbjct: 315 ELDMTAAQVREVLLRVPRSVSLETKVGKERDTEL 348
>gi|390437727|ref|ZP_10226255.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
gi|389838859|emb|CCI30379.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
Length = 378
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 118/179 (65%), Gaps = 1/179 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
W+RQ I + I +RTIRLP +I L+K+ +A+R+ Q+ +P++ +LA + +T E
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAEALEMTPE 256
>gi|297611772|ref|NP_001067832.2| Os11g0448400 [Oryza sativa Japonica Group]
gi|62701714|gb|AAX92787.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|108864350|gb|ABA93405.2| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|255680064|dbj|BAF28195.2| Os11g0448400 [Oryza sativa Japonica Group]
Length = 564
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 139/239 (58%), Gaps = 3/239 (1%)
Query: 242 SVKKKLSEGFDRN-DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
S KKK S+G +PL LW R+LLTA EE E IQDL++LE +++L G
Sbjct: 236 SSKKKRSKGASSGTNPLG-SLWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNG 294
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+PT +WA A G+ R L+ L G + +++ +N+RLV+ +A++++G G+ L+DL+Q
Sbjct: 295 GQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQ 354
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 420
EG GL++ EKF G RF++Y++WW++Q +RK++ + S+ RLP ++ +V E
Sbjct: 355 EGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKEC 414
Query: 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+ ++ P E++A G+ ++++E + + + +S+ + D T+Q D
Sbjct: 415 IKRLRRKLKRRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSKI-GSTDMTYQEVTAD 472
>gi|62734062|gb|AAX96171.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|125589330|gb|EAZ29680.1| hypothetical protein OsJ_13741 [Oryza sativa Japonica Group]
Length = 563
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 139/239 (58%), Gaps = 3/239 (1%)
Query: 242 SVKKKLSEGFDRN-DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
S KKK S+G +PL LW R+LLTA EE E IQDL++LE +++L G
Sbjct: 236 SSKKKRSKGASSGTNPLG-SLWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNG 294
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+PT +WA A G+ R L+ L G + +++ +N+RLV+ +A++++G G+ L+DL+Q
Sbjct: 295 GQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQ 354
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 420
EG GL++ EKF G RF++Y++WW++Q +RK++ + S+ RLP ++ +V E
Sbjct: 355 EGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKEC 414
Query: 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+ ++ P E++A G+ ++++E + + + +S+ + D T+Q D
Sbjct: 415 IKRLRRKLKRRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSKI-GSTDMTYQEVTAD 472
>gi|218194307|gb|EEC76734.1| hypothetical protein OsI_14770 [Oryza sativa Indica Group]
Length = 563
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 139/239 (58%), Gaps = 3/239 (1%)
Query: 242 SVKKKLSEGFDRN-DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
S KKK S+G +PL LW R+LLTA EE E IQDL++LE +++L G
Sbjct: 235 SSKKKRSKGASSGTNPLG-SLWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNG 293
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+PT +WA A G+ R L+ L G + +++ +N+RLV+ +A++++G G+ L+DL+Q
Sbjct: 294 GQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQ 353
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 420
EG GL++ EKF G RF++Y++WW++Q +RK++ + S+ RLP ++ +V E
Sbjct: 354 EGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKEC 413
Query: 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+ ++ P E++A G+ ++++E + + + +S+ + D T+Q D
Sbjct: 414 IKRLRRKLKRRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSKI-GSTDMTYQEVTAD 471
>gi|427735339|ref|YP_007054883.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427370380|gb|AFY54336.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 339
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 129/211 (61%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT++EE L ++Q + L K +L + R+PTL EW+ L+ +L ++ G
Sbjct: 44 LLTSEEEINLAKKVQQRMSLLAIKEELSKKLQRQPTLQEWSDKAQLNDTELLEQIDRGQR 103
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+++K+I ANLRLVV +AK+YQ R + DL+QEG++GL ++V+KF+P G +F++YAYWW
Sbjct: 104 AKQKMIAANLRLVVTIAKKYQKRNLDFLDLIQEGTLGLERAVDKFQPALGYKFSTYAYWW 163
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI Q SRTIRLP +I L+K+ +R Q+ +P ++A + + ++
Sbjct: 164 IRQGITRAISQQSRTIRLPIHITEKLNKIKRVQRELSQKLGRNPSVTEIAEVMEVKPSQI 223
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+ + R P+S+ V +Q+T + D
Sbjct: 224 RDYLSLARKPMSLDVRVGEEQNTDLKDLLED 254
>gi|427709818|ref|YP_007052195.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
gi|427362323|gb|AFY45045.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
Length = 416
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 121/216 (56%), Gaps = 22/216 (10%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN------------ 327
A + +RL + + +L S+ G P+L WA G+ DLK L G
Sbjct: 106 AVVSPYLRLIEVQERLASELGHRPSLERWAATAGVQLSDLKPTLSEGKRRWAEIAKITVE 165
Query: 328 ----------SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
S+E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P
Sbjct: 166 ELEQIQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTK 225
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G RF++YAYWW+RQ I +AI SRTIRLP +I L+K+ +A+R QE +P EDL
Sbjct: 226 GYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDL 285
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
A + +T ++ ++ +S++ V D+DT
Sbjct: 286 AIELEMTPSQVREVLLRVPRSVSLETKVGKDKDTEL 321
>gi|67925121|ref|ZP_00518496.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853040|gb|EAM48424.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 374
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 119/177 (67%), Gaps = 1/177 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL A+EE EL Q+Q L+ +E+ K +L+ + R P+ E A+A+G + + + LH G
Sbjct: 75 LLNAEEEVELAQQVQFLLEVEETKQRLKEELQRTPSKAECAEALGFETAKQFEHRLHKGR 134
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 135 IAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 194
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGIT 444
W+RQ I + I +RTIRLP ++ L+K+ +A+R+ Q+ +P++++LA + +T
Sbjct: 195 WIRQAITRTIANDARTIRLPIHVVEKLNKLKKAQRVLKQKLQRNPNEKELADELEVT 251
>gi|425454900|ref|ZP_18834625.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
gi|389804301|emb|CCI16819.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
Length = 377
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 118/179 (65%), Gaps = 1/179 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL+A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
W+RQ I + I +RTIRLP +I L+K+ +A+R+ Q+ +P++ +LA + T E
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAEALETTPE 256
>gi|427718372|ref|YP_007066366.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 7507]
gi|427350808|gb|AFY33532.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 7507]
Length = 416
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 123/216 (56%), Gaps = 22/216 (10%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN------------ 327
A I+ +RL + + +L S+ G P+L WA G+ DLK L +G
Sbjct: 106 AVIEPYLRLIEVQERLTSELGHRPSLERWATTAGIVLSDLKPTLANGKRRWAEIAKLTVE 165
Query: 328 ----------SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P
Sbjct: 166 ELEQIQTQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTK 225
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G RF++YAYWW+RQ I +AI SRTIRLP +I L+K+ +A+R QE +P EDL
Sbjct: 226 GYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDL 285
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
A + +T ++ ++ +S++ V D+DT
Sbjct: 286 AVELEMTPTQVREVLLRVPRSVSLETKVGKDKDTEL 321
>gi|332653408|ref|ZP_08419153.1| RNA polymerase sigma factor RpoD [Ruminococcaceae bacterium D16]
gi|332518554|gb|EGJ48157.1| RNA polymerase sigma factor RpoD [Ruminococcaceae bacterium D16]
Length = 446
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 134/227 (59%), Gaps = 13/227 (5%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREP--T 304
+ + F +DP+R++L LL++DEE EL + +++ ++LQ P
Sbjct: 136 MVDSFGTDDPVRMYLKEIGKVNLLSSDEEIELAQAMGAGAEAKEQLAELQESGEEIPAEV 195
Query: 305 LIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSM 364
L E KAI G ++++L ANLRLVV +AK+Y GRG+ DL+QEG++
Sbjct: 196 LAELNKAI-----------KRGERAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNL 244
Query: 365 GLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLY 424
GL+K+VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++KV+ R
Sbjct: 245 GLIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIRVSRQL 304
Query: 425 IQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+QE H P E++A + + VE++ ++ I + P+S++ P+ ++D+
Sbjct: 305 LQELGHDPSPEEIAEEMSMPVERVREILKIAQEPVSLETPIGEEEDS 351
>gi|443317305|ref|ZP_21046719.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783066|gb|ELR92992.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 392
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 125/212 (58%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL Q++ L +E+ K+ L GR P L + A A LS ++ L G +
Sbjct: 94 LLKPDEEIELARQVRFLGEMEELKASLTDSLGRRPLLADIAHAFDLSEAQVRQNLQLGRA 153
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ ++I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYWW
Sbjct: 154 AKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWW 213
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I + I +RTIRLP +I L+K+ +A R +E +P + +LA+ + +T ++L
Sbjct: 214 IRQGITRTIANDARTIRLPIHIVEKLNKLKKAHRDLRRELQRNPTEVELAQSLDMTPDQL 273
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
L + R LS+ V +DT D
Sbjct: 274 RGLQQVRRRSLSLNHRVGKGEDTELMELLEDG 305
>gi|425440636|ref|ZP_18820934.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
gi|389718887|emb|CCH97220.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
Length = 377
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 117/179 (65%), Gaps = 1/179 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
W+RQ I + I +RTIRLP +I L+K+ +A+R+ Q+ +P++ +LA + T E
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAEALETTPE 256
>gi|172035517|ref|YP_001802018.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|354555605|ref|ZP_08974906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171696971|gb|ACB49952.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|353552664|gb|EHC22059.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 374
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 114/171 (66%), Gaps = 1/171 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL +Q L++ E+ + +LQ P+ EWAKA+G + + LH G
Sbjct: 75 LLNAEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGR 134
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 135 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 194
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLA 438
W+RQ I + I +RTIRLP ++ L+K+ +A+R+ Q+ +P++++LA
Sbjct: 195 WIRQAITRTIANDARTIRLPIHVVEKLNKLKKAQRVLKQKLQRNPNEKELA 245
>gi|428203773|ref|YP_007082362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981205|gb|AFY78805.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 375
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 119/177 (67%), Gaps = 1/177 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL +EE EL ++ L+ E+ + +LQ F R PT EWA+A+ ++ R L++ L+ G
Sbjct: 76 LLKPEEEIELAHSVKFLVDAEETRRQLQEAFKRPPTKAEWAQALKMANERQLENRLYRGR 135
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 136 CAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYW 195
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGIT 444
W+RQ I + I +RTIRLP +I L+K+ +A+R+ Q +P++++LA+ + ++
Sbjct: 196 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRVLKQNLQRNPNEDELAQELEVS 252
>gi|427709662|ref|YP_007052039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427362167|gb|AFY44889.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 133/225 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL ++E Q+Q ++ L K KL Q R+PT +E+A+ I L
Sbjct: 23 DLVRTYLHEIGRIPLLDHEQEINFGKQVQQMMSLLTAKEKLVIQLNRQPTQLEFAEYIKL 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L +L G ++E++I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 83 SESELLQQLQQGYQAKEQMIRANLRLVVSIAKKYQRRNLDFLDLIQEGSLGLERGVEKFD 142
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI + RTIRLP ++ L+K+ +R Q+ H+P
Sbjct: 143 PTRGYKFSTYAYWWIRQAITRAIAEQGRTIRLPIHLTEKLNKIKRTQRELAQKLGHTPST 202
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A + + +++ + + R PLS++ V ++DT D
Sbjct: 203 TEIAAELSLDPKEIRDYLLLARQPLSLELRVGPERDTELHDMLED 247
>gi|186680839|ref|YP_001864035.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186463291|gb|ACC79092.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 378
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 134/211 (63%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ADEE EL +++ L + + ++ L + G+EPT +E A + ++ + L+S L+ G
Sbjct: 80 LLKADEEVELARRVRFLEEIRELQAALNLKLGQEPTKLEIASELEMTEKQLESRLYQGRV 139
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 140 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 199
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIRLP +I L+K+ +A+R Q+ +P + ++A + I+V++L
Sbjct: 200 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLCRNPTEGEMAEALDISVQQL 259
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+L + R LS+ V ++DT D
Sbjct: 260 RQLQQLRRQALSLNHRVGKEEDTELMDLLED 290
>gi|428307214|ref|YP_007144039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248749|gb|AFZ14529.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 318
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 129/228 (56%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L+ L KS L ++ G EP +WA+A
Sbjct: 8 TDTVRAYLREIGRVPLLTHEQEILYGKQVQRLVALRAVKSSLSAELGDEPNFSQWAQACE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L ++L+ + + ++ K++ ANLRLVV VAK+Y R I L DL+QEG++G+ + VEKF
Sbjct: 68 LEEQELQQAIATAELAKRKMVEANLRLVVSVAKKYIKRNIDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ I +AI + +R IRLP +I L+K+ +A+R Q+ +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKARAIRLPIHITEKLNKIKKAQRSLSQKLGRAAT 187
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+LA + +T ++ + R PLS+ V QDT D
Sbjct: 188 VTELAEELELTPPQVREYLERARQPLSLDLRVGDHQDTELGDLLEDTG 235
>gi|16331621|ref|NP_442349.1| RNA polymerase sigma factor SigC [Synechocystis sp. PCC 6803]
gi|383323363|ref|YP_005384217.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326532|ref|YP_005387386.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492416|ref|YP_005410093.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437684|ref|YP_005652409.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815773|ref|YP_007452225.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|2500787|sp|Q59996.1|RPSC_SYNY3 RecName: Full=Probable RNA polymerase sigma-C factor
gi|1001684|dbj|BAA10419.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274717|dbj|BAK51204.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272683|dbj|BAL30202.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275853|dbj|BAL33371.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279023|dbj|BAL36540.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781742|gb|AGF52711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 404
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 136/262 (51%), Gaps = 42/262 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------- 294
D +RL+L LL DEE + Q+Q +RL + +++
Sbjct: 48 TDLVRLYLQDIGRIPLLKRDEEVHIAQQVQSYLRLVEIQNRAAESDAAIDQYQTAIAVHD 107
Query: 295 -LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSRE 331
L Q G P+ WAK +G + LK L SG +++
Sbjct: 108 QLLVQLGHRPSYERWAKILGQTVATLKQTLKSGKKRWAELAGLTVEELENIEKQGITAKA 167
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
+I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++Y+YWW+RQ
Sbjct: 168 HMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYSYWWIRQ 227
Query: 392 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451
I +AI SR IRLP +I L+K+ A+R QE H+P +++A +G+T E++ +
Sbjct: 228 GITRAIATQSRMIRLPVHITEKLNKIKRAQRKISQEKGHTPKIDEVAEELGMTPEQVREV 287
Query: 452 IFITRMPLSMQQPVWADQDTTF 473
+ +S++ V D+DT
Sbjct: 288 LTQVPRSVSLELKVGQDKDTEL 309
>gi|57864855|gb|AAW57030.1| putative group 2 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
Length = 368
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 114/171 (66%), Gaps = 1/171 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL +Q L++ E+ + +LQ P+ EWAKA+G + + LH G
Sbjct: 69 LLNAEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGR 128
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 129 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 188
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLA 438
W+RQ I + I +RTIRLP ++ L+K+ +A+R+ Q+ +P++++LA
Sbjct: 189 WIRQAITRTIANDARTIRLPIHVVEKLNKLKKAQRVLKQKLQRNPNEKELA 239
>gi|443321959|ref|ZP_21050996.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442788351|gb|ELR98047.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 353
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 130/213 (61%), Gaps = 1/213 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL +EE L QI+ LI++E++ +L+ + R PT E A+ L S L + L+ G
Sbjct: 55 LLNPEEELTLAYQIKFLIKVEEQTQQLERELRRSPTKAELVTALALNSVGQLDNLLYQGR 114
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 115 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAVGLNRATEKFDPNKGYKFSTYAYW 174
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQ I + I +RTIRLP +I L+K+ +A+R+ Q+ + +P +E++A + I+ +
Sbjct: 175 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRVLKQQLHRNPKEEEIATEMEISPLQ 234
Query: 448 LERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
L L+ + R LS+ + +DT D
Sbjct: 235 LRYLLELKRQSLSLNHRIGKGEDTELVDLLQDT 267
>gi|257058077|ref|YP_003135965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|256588243|gb|ACU99129.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 375
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 119/177 (67%), Gaps = 1/177 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL A EE EL +Q L+ E+++ +L + PT +WA+A+G S R ++ L+ G
Sbjct: 76 LLEAQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGR 135
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 136 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 195
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGIT 444
W+RQ I + I +RTIRLP +I L+K+ +A+R+ Q+ +P++++LA+ + +T
Sbjct: 196 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQKLQRNPNEKELAQELEMT 252
>gi|218245053|ref|YP_002370424.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|218165531|gb|ACK64268.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 375
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 119/177 (67%), Gaps = 1/177 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL A EE EL +Q L+ E+++ +L + PT +WA+A+G S R ++ L+ G
Sbjct: 76 LLEAQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGR 135
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 136 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 195
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGIT 444
W+RQ I + I +RTIRLP +I L+K+ +A+R+ Q+ +P++++LA+ + +T
Sbjct: 196 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQKLQRNPNEKELAQELEMT 252
>gi|269926941|ref|YP_003323564.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermobaculum
terrenum ATCC BAA-798]
gi|269790601|gb|ACZ42742.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobaculum
terrenum ATCC BAA-798]
Length = 596
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 111/157 (70%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
+ G+ +R++LI ANLRLVV +AK+Y GRGI+L DL+QEG++GL+K+VEKF+ Q G +F+
Sbjct: 249 IAEGDIARKRLIEANLRLVVSIAKKYTGRGITLLDLIQEGNIGLIKAVEKFRHQKGYKFS 308
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG 442
+YA WW+RQ I +AI +RTIR+P ++ ++K+ +A+R QE P ++++A +G
Sbjct: 309 TYATWWIRQAITRAIADQARTIRIPVHMGEAINKIAQARRRLTQELGREPTEQEIANYLG 368
Query: 443 ITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
I VEK+ + I++ P+S++ PV ++DT+ D
Sbjct: 369 IPVEKIREVQKISQEPISLENPVGEEEDTSLGDFIQD 405
>gi|357156833|ref|XP_003577591.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 552
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 130/219 (59%), Gaps = 1/219 (0%)
Query: 261 LWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
LW RKLLTA EE EL IQDL++LE +++L G +PT +WA A G + L+
Sbjct: 243 LWKLTGRKLLTAKEEVELSNGIQDLLKLEAIQAELAEYSGCQPTFPQWAAAAGTDEKTLR 302
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
L G S+ +++ +N+RLV+ +A++++G G+ L+DL+QEG GL++ EKF G R
Sbjct: 303 KRLAHGIYSKNRMVTSNVRLVISIAREFEGPGLELYDLIQEGMQGLIRGAEKFDASKGFR 362
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 440
F++Y++WW++Q +RK++ + ++ RLP ++ +V E R + P E++A
Sbjct: 363 FSTYSHWWIKQAMRKSVSEQTQIFRLPAHMVEASYRVKECTRRLRRTLQRRPSNEEIAVD 422
Query: 441 VGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+G+ V+++E + + + +S+ + D ++Q D
Sbjct: 423 IGMPVKRVEAAVNLPKYSVSLDSKI-GTTDMSYQEVTAD 460
>gi|427727607|ref|YP_007073844.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427363526|gb|AFY46247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 416
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 134/263 (50%), Gaps = 43/263 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q +RL + +
Sbjct: 59 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLRLRTVLAGAAKQGDAVATPYLHLIEVQ 118
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P+L WA G+ DLK L G ++
Sbjct: 119 ERLASELGHRPSLERWANTAGVQVSDLKPILSEGKRRWAEIAKMTVEELEQIQSNGLQAK 178
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 238
Query: 391 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450
Q I +AI SRTIRLP +I L+K+ +A+R QE +P EDLA + +T ++
Sbjct: 239 QGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELEMTPSQVRE 298
Query: 451 LIFITRMPLSMQQPVWADQDTTF 473
++ +S++ V D+DT
Sbjct: 299 VLLRVPRSVSLETKVGKDKDTEL 321
>gi|407960748|dbj|BAM53988.1| RNA polymerase sigma factor SigC [Synechocystis sp. PCC 6803]
Length = 385
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 136/262 (51%), Gaps = 42/262 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------- 294
D +RL+L LL DEE + Q+Q +RL + +++
Sbjct: 29 TDLVRLYLQDIGRIPLLKRDEEVHIAQQVQSYLRLVEIQNRAAESDAAIDQYQTAIAVHD 88
Query: 295 -LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSRE 331
L Q G P+ WAK +G + LK L SG +++
Sbjct: 89 QLLVQLGHRPSYERWAKILGQTVATLKQTLKSGKKRWAELAGLTVEELENIEKQGITAKA 148
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
+I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++Y+YWW+RQ
Sbjct: 149 HMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYSYWWIRQ 208
Query: 392 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451
I +AI SR IRLP +I L+K+ A+R QE H+P +++A +G+T E++ +
Sbjct: 209 GITRAIATQSRMIRLPVHITEKLNKIKRAQRKISQEKGHTPKIDEVAEELGMTPEQVREV 268
Query: 452 IFITRMPLSMQQPVWADQDTTF 473
+ +S++ V D+DT
Sbjct: 269 LTQVPRSVSLELKVGQDKDTEL 290
>gi|148658692|ref|YP_001278897.1| RpoD family RNA polymerase sigma factor [Roseiflexus sp. RS-1]
gi|148570802|gb|ABQ92947.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus sp.
RS-1]
Length = 401
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 133/234 (56%), Gaps = 14/234 (5%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
E +DP+R++L LLTA EE L Q++ R E+ +LQ ++
Sbjct: 98 ESMGVDDPVRVYLREIGRVNLLTAQEEIMLAQQVE---RGEQASERLQKG--------DY 146
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + L L + G ++RE+LI ANLRLVV +AK+Y GRG+SL DL+QEG++GLM+
Sbjct: 147 APSERLQ---LHRWVQEGQAARERLIQANLRLVVSIAKKYLGRGMSLLDLIQEGNIGLMR 203
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+ EKF + G +F++YA WW+RQ I + I SRTIRLP ++ +++V+ A Q
Sbjct: 204 ATEKFDYRKGYKFSTYATWWIRQAITRVIADQSRTIRLPVHVGETINRVMRASNRIQQTT 263
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
P +++A +GI VEK+ R++ R +S++ P+ + DT D G
Sbjct: 264 GRDPTPDEIALELGIPVEKVRRVLEAARQTISLETPIGTEGDTVLADFIEDGKG 317
>gi|126659670|ref|ZP_01730799.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126619015|gb|EAZ89755.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 369
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 114/171 (66%), Gaps = 1/171 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A EE EL +Q L++ E+ + +L+ + R PT EW +A+G + + LH G
Sbjct: 70 LLNAQEEVELANHVQFLVQAEETRQQLREELQRPPTKAEWGQAMGFETQKQFEHRLHRGR 129
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 130 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 189
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLA 438
W+RQ I + I +RTIRLP ++ L+K+ +A+R+ Q+ +P++++LA
Sbjct: 190 WIRQAITRTIANDARTIRLPIHVVEKLNKLKKAQRVLKQKLQRNPNEKELA 240
>gi|434405397|ref|YP_007148282.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
gi|428259652|gb|AFZ25602.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
Length = 412
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 120/210 (57%), Gaps = 22/210 (10%)
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN------------------ 327
+RL + + +L S+ G P+L WA G+ DLK L +G
Sbjct: 108 LRLIEVQERLSSELGHRPSLERWATTAGIELPDLKPTLANGKRRWAETAKLTVEELDQVQ 167
Query: 328 ----SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++
Sbjct: 168 SQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFST 227
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGI 443
YAYWW+RQ I +AI SRTIRLP +I L+K+ +A+R QE +P EDLA + +
Sbjct: 228 YAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELEM 287
Query: 444 TVEKLERLIFITRMPLSMQQPVWADQDTTF 473
T ++ ++ +S++ V D+DT
Sbjct: 288 TPAQVREVLLRVPRSVSLETKVGKDKDTEL 317
>gi|1769413|dbj|BAA13122.1| RpoD2 sigma factor [Microcystis aeruginosa]
Length = 376
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 119/179 (66%), Gaps = 2/179 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL+A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
W+RQ I + I +RTIRLP +I L+K+ +A+ L Q+ +P++ +LA R+ IT E
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQILK-QDLQRNPNERELAERLEITPE 255
>gi|154498377|ref|ZP_02036755.1| hypothetical protein BACCAP_02366 [Bacteroides capillosus ATCC
29799]
gi|150272688|gb|EDM99866.1| RNA polymerase sigma factor RpoD [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 441
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 140/231 (60%), Gaps = 16/231 (6%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ----SQFGRE 302
L + F +DP+R++L LL DEE +L QD+ + K+++ ++ E
Sbjct: 126 LVDSFGIDDPVRMYLKEIGKVNLLNPDEEVQLA---QDMGAGDAAKARMAEIEAAEKRGE 182
Query: 303 PTLI--EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
P ++ E KA LK ++ G +++++L ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 183 PIVLTPEEEKA-------LKKDIRRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQ 235
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 420
EG++GL+K+VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++KV+
Sbjct: 236 EGNLGLIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIRV 295
Query: 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
R +QE H P E++A + + V+K+ ++ I + P+S++ P+ ++D+
Sbjct: 296 SRQLLQELGHDPSPEEIAEEMNMPVDKVREILKIAQEPVSLETPIGEEEDS 346
>gi|113477826|ref|YP_723887.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110168874|gb|ABG53414.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 384
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 120/203 (59%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL EE EL IQ+L+ EK KL + GR PT E A A G + L LH +
Sbjct: 84 LLNQKEEIELAKLIQELVVFEKLPEKLANDLGRTPTKSEVAVAAGFTESQLDHRLHQCRT 143
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ ++I++NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYWW
Sbjct: 144 AKRRMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 203
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I + I RTIRLP ++ ++K+ R + N P+ ++A+ + I++ +L
Sbjct: 204 IRQGITRTIANQGRTIRLPVHVVEQINKLRRVYRDLRRSLNRIPNDTEIAQELEISLPQL 263
Query: 449 ERLIFITRMPLSMQQPVWADQDT 471
L I R LS+ + D++T
Sbjct: 264 RNLQQIRRKTLSLNHRLGTDENT 286
>gi|434400128|ref|YP_007134132.1| RNA polymerase, sigma subunit, RpsC/SigC [Stanieria cyanosphaera
PCC 7437]
gi|428271225|gb|AFZ37166.1| RNA polymerase, sigma subunit, RpsC/SigC [Stanieria cyanosphaera
PCC 7437]
Length = 416
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 123/214 (57%), Gaps = 22/214 (10%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL----------------------SCRDL 319
+Q+ + L +L SQ P+L WA+ +G+ S ++L
Sbjct: 108 LQEFVELIDAHDRLVSQLSHRPSLRRWAQTVGMEIPLLKERLSVGKHRWAEVVNCSVKEL 167
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G
Sbjct: 168 ERIQRDGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGY 227
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLAR 439
RF++YAYWW+RQ I +AI SRTIRLP +I L+K+ +A+R QE H+P EDLA+
Sbjct: 228 RFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGHTPRIEDLAQ 287
Query: 440 RVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+ +T ++ ++ +S++ V ++DT
Sbjct: 288 ELDMTAGQIREVLLRVPRSVSLEIKVGKEKDTEL 321
>gi|354568141|ref|ZP_08987307.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353541106|gb|EHC10576.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 416
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 136/263 (51%), Gaps = 43/263 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q +R+ + +
Sbjct: 59 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLRMRIVLSNAAKQGDEILIPYLRVIEVQ 118
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P++ WA A G+ +LK L G S+
Sbjct: 119 ERLASELGHRPSIERWASAAGVEVLELKQILGQGKRRWAEIAKLTVEELEKIQSDGLQSK 178
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 238
Query: 391 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450
Q I +AI SRTIRLP +I L+K+ +A+R QE +P EDLA+ + +T ++
Sbjct: 239 QGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAQELEMTPTQVRE 298
Query: 451 LIFITRMPLSMQQPVWADQDTTF 473
++ +S++ V D+DT
Sbjct: 299 VLLRVPRSVSLETKVGKDKDTEL 321
>gi|359145132|ref|ZP_09178962.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Streptomyces sp. S4]
Length = 357
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 109/165 (66%)
Query: 316 CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
RDL+ + G ++ +LI ANLRLVV VAK+Y GRG+++ DL+QEG++GL+++VEKF
Sbjct: 107 ARDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQEGNLGLIRAVEKFDY 166
Query: 376 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKE 435
G +F++YA WW+RQ + +A+ +RTIR+P ++ L+++V+ +R +QE P E
Sbjct: 167 TRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRTQRALLQEAGREPGAE 226
Query: 436 DLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
++ R+G++ EK+E ++ + R P+S+ PV + D DA
Sbjct: 227 EVGERLGLSAEKVEEVLRLAREPISLHAPVGGEDDVFLGDLIEDA 271
>gi|75907387|ref|YP_321683.1| RNA polymerase sigma factor SigC [Anabaena variabilis ATCC 29413]
gi|75701112|gb|ABA20788.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena variabilis ATCC
29413]
Length = 416
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 135/263 (51%), Gaps = 43/263 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q ++L + +
Sbjct: 59 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLKLRVVLANAAKQGDEVATPYLHLIEVQ 118
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P+L WA G++ DLK L G S+
Sbjct: 119 ERLASELGHRPSLERWAATAGINLCDLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSK 178
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 238
Query: 391 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450
Q I +AI SRTIRLP +I L+K+ +A+R QE +P EDLA + +T ++
Sbjct: 239 QGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQVRE 298
Query: 451 LIFITRMPLSMQQPVWADQDTTF 473
++ +S++ V D+DT
Sbjct: 299 VLLRVPRSVSLETKVGKDKDTEL 321
>gi|254415890|ref|ZP_05029647.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177317|gb|EDX72324.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 352
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 137/248 (55%), Gaps = 6/248 (2%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
T N++ + K S D +R +L LLT ++E Q+Q ++ L + K
Sbjct: 28 TVNTKPKTTKPTFS-----ADMVRTYLHEIGRVPLLTHEQEIVYGKQVQQMMPLLEAKDA 82
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
L REPT+ EWA + L LK ++ G ++ K+I ANLRLVV +AK+YQ R +
Sbjct: 83 LAETLEREPTMQEWADHVDLEESALKKIINQGTRAKRKMIEANLRLVVAIAKKYQKRNME 142
Query: 355 LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLL 414
DL+QEG++GL + VEKF P G +F++YAYWW+RQ I +AI Q +R IRLP +I L
Sbjct: 143 FLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKL 202
Query: 415 SKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 474
+K+ + +R Q + ++ + + + ++ + I R P+S+ V +QDT
Sbjct: 203 NKIKKVQRELSQRLGRNATPTEIGQELELEPAQIREYLSIARQPVSLDVRVGDNQDTEL- 261
Query: 475 STFLDAAG 482
S L+ +G
Sbjct: 262 SDLLEDSG 269
>gi|17229184|ref|NP_485732.1| RNA polymerase sigma factor SigC [Nostoc sp. PCC 7120]
gi|20141790|sp|Q03066.2|RPSC_ANASP RecName: Full=RNA polymerase sigma-C factor
gi|17135512|dbj|BAB78058.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
Length = 416
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 135/263 (51%), Gaps = 43/263 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q ++L + +
Sbjct: 59 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLKLRIVLANAVKQGDEVATPYLHLIEVQ 118
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P+L WA G++ DLK L G S+
Sbjct: 119 ERLASELGHRPSLERWAATAGINLCDLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSK 178
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 238
Query: 391 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450
Q I +AI SRTIRLP +I L+K+ +A+R QE +P EDLA + +T ++
Sbjct: 239 QGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQVRE 298
Query: 451 LIFITRMPLSMQQPVWADQDTTF 473
++ +S++ V D+DT
Sbjct: 299 VLLRVPRSVSLETKVGKDKDTEL 321
>gi|142114|gb|AAA22047.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
Length = 416
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 135/263 (51%), Gaps = 43/263 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q ++L + +
Sbjct: 59 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLKLRIVLANAVKQGDEVATPYLHLIEVQ 118
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P+L WA G++ DLK L G S+
Sbjct: 119 ERLASELGHRPSLERWAATAGINLCDLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSK 178
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 238
Query: 391 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450
Q I +AI SRTIRLP +I L+K+ +A+R QE +P EDLA + +T ++
Sbjct: 239 QGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQVRE 298
Query: 451 LIFITRMPLSMQQPVWADQDTTF 473
++ +S++ V D+DT
Sbjct: 299 VLLRVPRSVSLETKVGKDKDTEL 321
>gi|284928680|ref|YP_003421202.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
gi|284809139|gb|ADB94844.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
Length = 420
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 164/309 (53%), Gaps = 60/309 (19%)
Query: 225 VSKPQVTNHETYNSRK--ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQI 282
++P N + SR+ S KK +E D +R++L +LL A+EE EL +I
Sbjct: 37 TTEPDGKNRKISASRRRDTSKKKPYTE-----DSIRVYLQEIGRIRLLRAEEEIELARKI 91
Query: 283 QDLIRLEKEKSKL-----------------------------QSQFGREPTLIEWAKAIG 313
DL++LE+ + L QS +EP +W++
Sbjct: 92 ADLLQLERIREALWEELDQVPNDEQWAKRIFQWENIEQIIRTQSSKEKEP---KWSEVTS 148
Query: 314 L-----SCRDL---------------KSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
L + +L K L+ G +++K++++NLRLVV +AK+Y RG+
Sbjct: 149 LLQEKKTISNLEKIWELEQKSYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGL 208
Query: 354 SLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTL 413
S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP ++Y
Sbjct: 209 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 268
Query: 414 LSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+S++ + +L QE P +E++A R+ +T+EKL + ++P+S++ P+ ++D+
Sbjct: 269 ISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 328
Query: 474 QSTFLDAAG 482
F++A G
Sbjct: 329 -GDFIEADG 336
>gi|397614537|gb|EJK62861.1| hypothetical protein THAOC_16512 [Thalassiosira oceanica]
Length = 466
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 138/236 (58%), Gaps = 6/236 (2%)
Query: 219 RSKKRKVSKPQVTNHETYNSRKASVKKKLSE-GFDRNDPLRLFLWGPETRKLLTADEEFE 277
R+ K + +KP +N E +K + E GFD + ++ +LL +EE
Sbjct: 114 RAIKSRATKPGNSNGEPPKPVSRKIKASVRETGFDS---MHYYMKTMGNHELLQKNEEII 170
Query: 278 LIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG--LSCRDLKSELHSGNSSREKLIN 335
L +IQ LI E ++ +L+++ R PT EWA +I ++ LK ++ ++ L
Sbjct: 171 LAREIQILIGWEGKRDELEAELVRPPTYQEWAASIDPEMTVIQLKRQIRRSLRAKAALTE 230
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395
+NLRLV+ +AK+YQ RG+++ DL QEG++GL ++ EKF P+ G RF++YA WW++Q I +
Sbjct: 231 SNLRLVISIAKRYQNRGLNMQDLCQEGTLGLTRACEKFDPEKGFRFSTYATWWIKQGIMR 290
Query: 396 AIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451
AI +RTIRLP +I+ L+ V + + E P KE++A +VGI +K++ L
Sbjct: 291 AIADQARTIRLPVHIHDQLNLVRKTENDLASELGRDPTKEEIAAKVGIKPDKIDFL 346
>gi|421739056|ref|ZP_16177384.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
gi|406692448|gb|EKC96141.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
Length = 357
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 109/165 (66%)
Query: 316 CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
RDL+ + G ++ +LI ANLRLVV VAK+Y GRG+++ DL+QEG++GL+++VEKF
Sbjct: 107 ARDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQEGNLGLIRAVEKFDY 166
Query: 376 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKE 435
G +F++YA WW+RQ + +A+ +RTIR+P ++ L+++V+ +R +QE P E
Sbjct: 167 TRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRTQRALLQEAGREPAAE 226
Query: 436 DLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
++ R+G++ EK+E ++ + R P+S+ PV + D DA
Sbjct: 227 EVGERLGLSAEKVEEVLRLAREPISLHAPVGGEDDVFLGDLIEDA 271
>gi|440682434|ref|YP_007157229.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena cylindrica PCC
7122]
gi|428679553|gb|AFZ58319.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena cylindrica PCC
7122]
Length = 416
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 123/219 (56%), Gaps = 25/219 (11%)
Query: 277 ELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN--------- 327
E+I Q LI +++ +L S+ G P+L WA G+ +LK L G
Sbjct: 106 EVIVPYQRLIEVQE---RLSSELGHRPSLERWATTAGIELSNLKPTLSEGKRRWAEIAEL 162
Query: 328 -------------SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF
Sbjct: 163 TVLELEKIQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFD 222
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G RF++YAYWW+RQ I +AI SRTIRLP +I L+K+ +A+R QE +P
Sbjct: 223 PTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTL 282
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
EDLA + +T ++ ++ +S++ V D+DT
Sbjct: 283 EDLAIELDMTPTQVREVLLRVPRSVSLETKVGKDKDTEL 321
>gi|427418816|ref|ZP_18908999.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
gi|425761529|gb|EKV02382.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
Length = 434
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 108/167 (64%)
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
+WA+ +G+S ++L G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 173 QWAELVGMSVQELDEACSEGTRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 232
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
++VEKF P G RF++YAYWW+RQ I +AI SRTIRLP +I L+K+ +A+R Q
Sbjct: 233 ERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQ 292
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+ ED+AR + +T ++ ++ +S++ V ++DT
Sbjct: 293 TKGRTATVEDIARELKMTAPQVREVLLKVPRSISLETKVGKERDTEL 339
>gi|428226189|ref|YP_007110286.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427986090|gb|AFY67234.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 318
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 127/213 (59%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E Q+Q L L+ + L ++ REPT EWA+A G+S DL+ + G
Sbjct: 23 LLTHEQEILYGKQVQRLSGLQSIREGLVERWDREPTSTEWAEAAGVSEADLEQVIQEGEL 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ +++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF P G RF++YAYWW
Sbjct: 83 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI + RTIRLP +I L+K+ +A+R Q+ + +LA + +T +++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRAASAAELAEELDLTTKQV 202
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+ R PLS+ V +QDT D
Sbjct: 203 RDYLEKARQPLSLDLRVGDNQDTELGELLEDTG 235
>gi|2564653|gb|AAC45358.1| group 2 alternative sigma factor [Nostoc punctiforme PCC 73102]
Length = 321
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 132/245 (53%), Gaps = 5/245 (2%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
T++ KAS K + D +R +L LLT ++E ++Q L+ + E K
Sbjct: 5 TFSDTKASNTNKAT-----TDTVRAYLKEIGRIPLLTQEQEIIFAQEVQQLMTILAESEK 59
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
L + R PTL EWA + LS ++L +L+ G ++ K+I ANLRLVV +AKQYQ R +
Sbjct: 60 LTIELKRTPTLSEWANQMQLSEQELLQQLNQGKKAKHKMITANLRLVVSIAKQYQRRNLE 119
Query: 355 LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLL 414
L DL+QEG++GL + VEKF P G R +YAYWW+RQ I +AI Q R IRLP +I L
Sbjct: 120 LMDLIQEGTLGLERGVEKFNPALGYRKTTYAYWWIRQGITRAIAQQGRAIRLPIHINEKL 179
Query: 415 SKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 474
+K+ +R Q P ++A + + ++ + + +S+ V + +D Q
Sbjct: 180 NKIKRVQRELSQTLGRIPTSTEIANALSLKPSQIREFLLLATRTISLDIRVSSAKDLRLQ 239
Query: 475 STFLD 479
D
Sbjct: 240 DLIED 244
>gi|17158751|ref|NP_478262.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|464687|sp|Q03065.1|RPSB_ANASP RecName: Full=RNA polymerase sigma-B factor
gi|424021|pir||B47017 probable transcription initiation factor sigma SigB - Anabaena sp
gi|142112|gb|AAA22046.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134700|dbj|BAB77258.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
Length = 332
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 130/225 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D + ++L LL+ ++E Q+Q ++ + K +L + REPTL EWA + L
Sbjct: 23 DAVSIYLHKIGRVPLLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQL 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
L +L G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 83 KEDVLLQQLSQGQIAKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFD 142
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q SRTIRLP ++ L+K+ +R Q+ +
Sbjct: 143 PTLGYKFSTYAYWWIRQGITRAIAQQSRTIRLPIHMADKLNKIKCVQRELSQKLGYIAGV 202
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A+ + + ++ + + R P+S+ + +QDT Q D
Sbjct: 203 TEIAQALNLEPSQIREYLQLVRQPVSLDMRIGFEQDTQLQDLLKD 247
>gi|146739110|gb|ABQ42602.1| chloroplast RNA-polymerase sigma factor precursor [Heterosigma
akashiwo]
Length = 404
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 117/197 (59%), Gaps = 1/197 (0%)
Query: 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI 312
++D ++ ++ T +LTA EE L QI+ + +EK L+ GR+PT EW +
Sbjct: 71 QSDTMKEYVKDLRTVDMLTAQEEILLTRQIKRGMEIEKALVTLEKTLGRKPTEEEWVNFV 130
Query: 313 GL-SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
GL S D++ L + S+ +INANLRLVV AK YQ RG+S DL+QEG+ GL K+ E
Sbjct: 131 GLKSIDDIRKNLKRASKSKSAIINANLRLVVSTAKAYQYRGVSFQDLVQEGTCGLHKATE 190
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHS 431
KF P+ G RF++YA WW++Q I +A+ SR +RLP +++ L + AK + E
Sbjct: 191 KFDPRKGFRFSTYATWWIKQGIMRAVTDQSRVVRLPVHVHDALFHIRRAKANFWTEHLRE 250
Query: 432 PDKEDLARRVGITVEKL 448
P +LA G+T +K+
Sbjct: 251 PTLAELAEATGLTPQKI 267
>gi|434386344|ref|YP_007096955.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428017334|gb|AFY93428.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 326
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 131/229 (57%), Gaps = 1/229 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LL+ ++E Q+Q ++ L+ + L+ R PT EWA+A
Sbjct: 16 GDMVRTYLHEIGRVPLLSHEQELCYGKQVQQMMLLKGIEESLEQTLNRPPTKTEWAQAAT 75
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S +L L G +++K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 76 ISEAELDRVLRQGRQAKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGSLGLERGVEKF 135
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G +F++YAYWW+RQ I +AI Q R+IRLP +I L+K+ + +R Q+ S
Sbjct: 136 DPSRGYKFSTYAYWWIRQAITRAIAQQGRSIRLPIHITEKLNKIKKTQRELSQQLGRSAT 195
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++A + + ++ + ++R P+S+ V QDT S L+ G
Sbjct: 196 SAEIAVALELEPAQIRDYLTLSRQPISLDAKVGDRQDTEL-SELLEDGG 243
>gi|428311648|ref|YP_007122625.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
gi|428253260|gb|AFZ19219.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
Length = 417
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 121/212 (57%), Gaps = 22/212 (10%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG--------------- 326
I+ + L + +L SQ G P+L WA G+ DLK L +G
Sbjct: 109 IERYVHLIETHDRLVSQLGHRPSLERWAATAGVEVSDLKPILAAGKQRWAELAGLSVKEL 168
Query: 327 -------NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
N ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G
Sbjct: 169 EQIQSQGNRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGY 228
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLAR 439
RF++YAYWW+RQ I +AI SRTIRLP +I L+K+ +A+R QE + ED+A
Sbjct: 229 RFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTATIEDIAL 288
Query: 440 RVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+ +T E++ ++ +S++ V ++DT
Sbjct: 289 ELEMTKEQVREVLLRVPRSVSLEIKVGKEKDT 320
>gi|242041441|ref|XP_002468115.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
gi|241921969|gb|EER95113.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
Length = 528
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 150/271 (55%), Gaps = 9/271 (3%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKAS-VKKKLSEGFDRNDPLRLF--LWGPETRKLL 270
R ER++++ + + + N+ AS +KK +G PL F + GP +LL
Sbjct: 174 RRTERKARRVRAAMKAAKCFSSRNAVGASSTRKKRLKGC--QTPLGCFYKMTGP---RLL 228
Query: 271 TADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSR 330
TA++E E IQDL++LE + ++ G EPT +WA A G L+ L+ G +
Sbjct: 229 TAEQEVEFSEGIQDLLKLEAIQKEVAQYNGGEPTFSQWAAAAGTDENTLRRRLNHGVYCK 288
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
+++ +N+RLV+ +AK+++G G+ DL+QEG GL++ EKF G RF++Y++WW++
Sbjct: 289 NRMVKSNVRLVISIAKEHEGPGMEFSDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIK 348
Query: 391 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450
Q IRK++ + ++ IRLP ++ S+V E R +E P E++A G+T+ ++E
Sbjct: 349 QAIRKSVLEQTQIIRLPAHMAEASSRVKECCRRLRRELKRLPSNEEIAVDTGMTIRRVEA 408
Query: 451 LIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+ + + +S V D T+Q D +
Sbjct: 409 AMSLPKYSVSFTSKVGCT-DVTYQEIMPDTS 438
>gi|428300095|ref|YP_007138401.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
gi|428236639|gb|AFZ02429.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
Length = 442
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 134/263 (50%), Gaps = 43/263 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q +RL + +
Sbjct: 85 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLRLRVVLANAAKQGDEIIAPYLRIIEAQ 144
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSEL----------------------HSGNSSR 330
+L S+ G P++ WA G+ +LK L SG S+
Sbjct: 145 ERLASELGHRPSMERWASTAGVDVFELKQILAKGKRRWAEVAKLTVEELEQMQSSGLQSK 204
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 205 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 264
Query: 391 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450
Q I +AI SRTIRLP +I L+K+ +A+R QE +P EDLA + +T +
Sbjct: 265 QGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAVELEMTPTAVRE 324
Query: 451 LIFITRMPLSMQQPVWADQDTTF 473
++ +S++ V D+DT
Sbjct: 325 VLLRVPRSVSLETKVGKDKDTEL 347
>gi|156740438|ref|YP_001430567.1| RpoD family RNA polymerase sigma factor [Roseiflexus castenholzii
DSM 13941]
gi|156231766|gb|ABU56549.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus
castenholzii DSM 13941]
Length = 405
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 148/284 (52%), Gaps = 18/284 (6%)
Query: 203 PLEEVKQFSQPRFLERRSKKRKV----SKPQVTNHETYNSRKASVKKKLSEGFDRNDPLR 258
P+ E + R LER + + P HE + +G +DP+R
Sbjct: 52 PVAEPASETVERILERTVGDHDLFDHHADPCHALHEQDDDSLDHDLDADVDGIGVDDPVR 111
Query: 259 LFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRD 318
++L LLTA EE L Q++ R E+ +LQ+ + T +E +
Sbjct: 112 VYLREIGRVNLLTAQEEIMLAQQVE---RGEQANERLQNG---DYTPVERLQ-------- 157
Query: 319 LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 378
L + G ++RE+LI ANLRLVV +AK+Y GRG+SL DL+QEG++GLM++ EKF + G
Sbjct: 158 LHRWVQEGQAARERLIQANLRLVVSIAKKYLGRGMSLLDLIQEGNIGLMRATEKFDYRKG 217
Query: 379 CRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLA 438
+F++YA WW+RQ I + I SRTIRLP ++ +++V+ Q P +++A
Sbjct: 218 YKFSTYATWWIRQAITRVIADQSRTIRLPVHVGETINRVMRTSNRIQQTTGRDPTPDEIA 277
Query: 439 RRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+GI VEK+ R++ R +S++ P+ + D+ D G
Sbjct: 278 LELGIPVEKVRRVLEAARQTISLETPIGPEGDSVLADFIEDGKG 321
>gi|282897491|ref|ZP_06305492.1| sigC (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281197586|gb|EFA72481.1| sigC (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 429
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 115/204 (56%), Gaps = 22/204 (10%)
Query: 292 KSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SS 329
+ +L S+ G P+L WA G+ DLK L G +
Sbjct: 131 QERLVSELGHRPSLERWASTAGIKLMDLKPTLSEGKRRWGEIAQLTVEELDEIQSQGIQA 190
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWV 389
+E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+
Sbjct: 191 KEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWI 250
Query: 390 RQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLE 449
RQ I +AI SRTIRLP +I L+K+ +A+R QE +P EDLA + +T ++
Sbjct: 251 RQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLALELDMTPNQVR 310
Query: 450 RLIFITRMPLSMQQPVWADQDTTF 473
++ +S++ V D+DT
Sbjct: 311 EVLLRVPRSVSLETKVGKDKDTEL 334
>gi|299472557|emb|CBN79859.1| chloroplast RNA-polymerase sigma factor precursor [Ectocarpus
siliculosus]
Length = 835
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 122/198 (61%), Gaps = 7/198 (3%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
+PL ++ + KLL DEE L QIQ ++LE+ + +L++ G P+ EWA + L
Sbjct: 226 NPLNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETTHGAAPSCEEWASTLHL 285
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ +L EL + ++E +I+ANLRLVV +A+ Y+GRG++ DL+QEG+MGL+K+ EKF
Sbjct: 286 TKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKFN 345
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE---GNHS 431
P+ G +F +YA WW++++I I SR IRLP ++ LS + R Y E
Sbjct: 346 PEMGFQFYTYARWWIKKSILTGIANQSRVIRLPTQVHAFLSSI----RKYTYELTVDGKV 401
Query: 432 PDKEDLARRVGITVEKLE 449
P E+L ++G TVEK++
Sbjct: 402 PTDEELGDKLGATVEKIQ 419
>gi|413920797|gb|AFW60729.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 129/219 (58%), Gaps = 1/219 (0%)
Query: 261 LWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
LW R+LLTA EE E IQDL++LE +++L G +PT +WA A G+ + L+
Sbjct: 230 LWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLR 289
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
L+ G + +++ +N+RLV+ +A++++G G+ +DL+QEG GL++ EKF G R
Sbjct: 290 KRLNYGIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQEGMQGLIRGAEKFDSSKGFR 349
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 440
F++Y++WW++Q +RK++ + S+ RLP ++ +V E + ++ P E++A
Sbjct: 350 FSTYSHWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECTKRLRRKLRRRPTNEEIAVD 409
Query: 441 VGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
GI ++++E + + + +S+ + D T+Q D
Sbjct: 410 TGIPIKRVEAAVNLPKYSVSLDSKI-GSTDMTYQEVTAD 447
>gi|126697159|ref|YP_001092045.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126544202|gb|ABO18444.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 344
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 136/219 (62%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E L Q+Q+ +++E+ + ++ G +P++ E + + L
Sbjct: 35 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAELEISELTGDKPSIDELSTKLNL 94
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +K L +G ++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF
Sbjct: 95 STSVIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 154
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI + SR IRLP +I +L+K+ + +R QE + +P
Sbjct: 155 PARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTV 214
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+LA+ V + + ++ L+ P+S++ V +DT
Sbjct: 215 SELAKYVELPEDDVKDLMCKAGQPVSLETKVGDGEDTVL 253
>gi|427728873|ref|YP_007075110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427364792|gb|AFY47513.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 309
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 128/215 (59%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 316
+R++L LLT+D+E Q+Q +I +E+ K +L Q REPTL E A + S
Sbjct: 2 VRVYLQEIGQFPLLTSDQEITYGRQVQQMIAIEEHKQQLSQQLHREPTLAELADFVNKSE 61
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQ 376
++ L G +++K+I ANLRLVV VAK+YQ R + DL+QEG++GL + +EKF P
Sbjct: 62 TEVNQILQQGQRAKQKMITANLRLVVSVAKKYQHRNLEFLDLVQEGAIGLQRGIEKFDPN 121
Query: 377 AGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKED 436
G + ++YAYWW+ Q I +AI + SRT+RLP ++ L+++ +A+R Q N +
Sbjct: 122 RGYKLSTYAYWWISQAITRAIAEKSRTVRLPVHVNEKLNQIKKAQRELFQTLNRRATVTE 181
Query: 437 LARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+A+++ + ++ + + +S+ V +QDT
Sbjct: 182 IAQKLNLEPSQIREYLSVASGTISLDLKVGDNQDT 216
>gi|162458688|ref|NP_001104923.1| sigma factor SIG2A [Zea mays]
gi|4336606|gb|AAD17854.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 129/219 (58%), Gaps = 1/219 (0%)
Query: 261 LWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
LW R+LLTA EE E IQDL++LE +++L G +PT +WA A G+ + L+
Sbjct: 230 LWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLR 289
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
L+ G + +++ +N+RLV+ +A++++G G+ +DL+QEG GL++ EKF G R
Sbjct: 290 KRLNYGIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQEGMQGLIRGAEKFDSSKGFR 349
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 440
F++Y++WW++Q +RK++ + S+ RLP ++ +V E + ++ P E++A
Sbjct: 350 FSTYSHWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECTKRLRRKLRRRPTNEEIAVD 409
Query: 441 VGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
GI ++++E + + + +S+ + D T+Q D
Sbjct: 410 TGIPIKRVEAAVNLPKYSVSLDSKI-GSTDMTYQEVTAD 447
>gi|428307386|ref|YP_007144211.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248921|gb|AFZ14701.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 327
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 137/243 (56%), Gaps = 3/243 (1%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
++ KK ++ D +R +L LLT ++E Q+Q ++ L K L Q
Sbjct: 4 SNTAKKTTKPLFTADMVRTYLHEIGRVPLLTHEQEIVYGKQVQQMMALIDAKEALAEQQN 63
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
REPT EWA + LS +L + G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 64 REPTASEWAAQVHLSEDELTRIITLGQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 420
EG++GL + VEKF P G +F++YAYWW+RQ I +AI Q +R IRLP +I L+K+ +
Sbjct: 124 EGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKT 183
Query: 421 KRLYIQE-GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+R Q+ G H+ E +A + + ++ + I R P+S+ V +QDT S L+
Sbjct: 184 QRELAQKLGRHATPTE-IAVALELEPAQIREYLNIARQPVSLDVRVGDNQDTEL-SELLE 241
Query: 480 AAG 482
G
Sbjct: 242 DEG 244
>gi|428205323|ref|YP_007089676.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
gi|428007244|gb|AFY85807.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
Length = 416
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 123/214 (57%), Gaps = 22/214 (10%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSEL------------------ 323
I+ I L + + +L S+ G P+L WA + G+S +LK L
Sbjct: 108 IKTYITLIEAQERLTSELGHRPSLERWAASAGISVMELKPALAVGKRRWAEIAKITVEEL 167
Query: 324 ----HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G
Sbjct: 168 EQIQNDGIHAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGY 227
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLAR 439
RF++YAYWW+RQ I +AI SRTIRLP +I L+K+ +A+R QE +P ED+A
Sbjct: 228 RFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLAQEKGRTPTIEDIAL 287
Query: 440 RVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+ +T ++ ++ +S++ V ++DT
Sbjct: 288 ELEMTAPQVREVLLRVPRSVSLETKVGKEKDTEL 321
>gi|88809466|ref|ZP_01124974.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
gi|88786685|gb|EAR17844.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
Length = 376
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 137/269 (50%), Gaps = 42/269 (15%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFEL--------------------IAQIQDLIRLEKEKS 293
ND LRL+L LLT++EE L IA I+ L+ LE+ +
Sbjct: 19 NDLLRLYLQDIGRVDLLTSEEEVTLSRQVQQRERLLVQERDLSTRIAAIRVLLDLEELQQ 78
Query: 294 KLQSQFGREPTLIEWAKAI----------------------GLSCRDLKSELHSGNSSRE 331
+ + PT EWA+A GL ++L+ L G +R+
Sbjct: 79 REANHISHWPTRQEWARAAELPLSELNRLLNEGYTLWAKESGLDTKELQQRLREGRRARD 138
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+RQ
Sbjct: 139 RMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQ 198
Query: 392 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451
I +AI SRTIRLP +I L+++ ++ E DLA+ +G++ E + +
Sbjct: 199 GITRAIATQSRTIRLPVHITEKLNRIKRVQQEIASEKGRLASVSDLAKELGVSEETVRQT 258
Query: 452 IFITRMPLSMQQPVWADQDTTFQSTFLDA 480
+ +S++ V DQDT D
Sbjct: 259 LARVPRSVSLETRVGKDQDTQLGDLLEDG 287
>gi|342213895|ref|ZP_08706614.1| RNA polymerase sigma factor RpoD [Veillonella sp. oral taxon 780
str. F0422]
gi|341597483|gb|EGS40042.1| RNA polymerase sigma factor RpoD [Veillonella sp. oral taxon 780
str. F0422]
Length = 410
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 140/246 (56%), Gaps = 28/246 (11%)
Query: 226 SKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDL 285
S + E ++ ++ + EG + +DP+R++L LL+ DEE L QI
Sbjct: 99 SDIDIATEEDDEEKEINLDLSIPEGMNIDDPVRMYLKEIGRVPLLSGDEEIILAQQI--- 155
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVA 345
E G + + E+ G+S+++KLI+ANLRLVV +A
Sbjct: 156 ---------------------EAGNQEGATYK----EVRLGSSAKQKLIDANLRLVVSIA 190
Query: 346 KQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIR 405
K+Y GRG+ DL+QEG++GL+K+V+KF G +F++YA WW+RQ I +AI +RTIR
Sbjct: 191 KRYVGRGMLFLDLIQEGNLGLIKAVDKFDYTKGYKFSTYATWWIRQAITRAIADQARTIR 250
Query: 406 LPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPV 465
+P ++ ++K++ +R +Q+ P E++A +GITVE++ + I++ P+S++ P+
Sbjct: 251 IPVHMVETINKLVRIQRQLLQDLGREPSPEEIAEGMGITVERVREIQKISQEPVSLETPI 310
Query: 466 WADQDT 471
++D+
Sbjct: 311 GEEEDS 316
>gi|78780107|ref|YP_398219.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78713606|gb|ABB50783.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 344
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 136/219 (62%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E L Q+Q+ +++E+ + ++ G +P++ E + + L
Sbjct: 35 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAELEIIELTGDKPSIEELSSKLNL 94
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +K L +G ++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF
Sbjct: 95 SIPIIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 154
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI + SR IRLP +I +L+K+ + +R QE + +P
Sbjct: 155 PARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTV 214
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+LA+ V + E ++ L+ P+S++ V +DT
Sbjct: 215 SELAKYVELPEEDVKDLMCKAGQPVSLETKVGDGEDTVL 253
>gi|269215371|ref|ZP_06159225.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
gi|269131227|gb|EEZ62301.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
Length = 383
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 146/248 (58%), Gaps = 27/248 (10%)
Query: 237 NSRKASVKKKLSEG----FDRNDPLRLFLWGPETRKLLTADEEFELIAQIQ-------DL 285
+SR + V+++ S+G DP+R++L LLTA EE +L +I+ +L
Sbjct: 58 SSRASKVRRRSSDGSSAVMLTGDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVAATAEL 117
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVA 345
R E E +L + R T +E A+GL + ++LI ANLRLVV +A
Sbjct: 118 ERAEDEGIELNRRDKRRLTRVE---AVGLDAK-------------QQLIEANLRLVVSIA 161
Query: 346 KQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIR 405
K+Y GRG+ DL+QEG++GL+++VEKF G +F++YA WW+RQ I +AI +RTIR
Sbjct: 162 KRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIR 221
Query: 406 LPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPV 465
+P ++ ++K++ +R +Q+ N P E++ ++G++ E++ + I++ P+S++ P+
Sbjct: 222 IPVHMVETINKLVRIQRQLLQDLNRDPTPEEIGEKMGLSAERVREIQKISQEPVSLETPI 281
Query: 466 WADQDTTF 473
++D+
Sbjct: 282 GEEEDSQL 289
>gi|254526733|ref|ZP_05138785.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
gi|221538157|gb|EEE40610.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
Length = 333
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 135/219 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E L Q+Q+ + +E+ + +L G +P++ E + + L
Sbjct: 24 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMEVERAELELIELAGDKPSIDELSTKLNL 83
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +K L +G ++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF
Sbjct: 84 STSIIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 143
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI + SR IRLP +I +L+K+ + +R QE + +P
Sbjct: 144 PARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTV 203
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+LA+ V + + ++ L+ P+S++ V +DT
Sbjct: 204 SELAKYVELPEDDVKDLMCKAGQPVSLETKVGDGEDTVL 242
>gi|357112914|ref|XP_003558250.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 537
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 134/239 (56%), Gaps = 4/239 (1%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
S +KK +G +PL F + R+LLTA +E EL IQD ++LE + ++ G
Sbjct: 211 GSSRKKRVKGC--RNPLGCF-YKMSARRLLTAKQEVELSEGIQDFLKLEAIQKEVAHYNG 267
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EPT +WA A G L+ L G + ++ +N+RLV+ +AK+++G G DL+Q
Sbjct: 268 GEPTFTQWAAAAGTDENTLRKRLSYGIYCKNMMVKSNVRLVISIAKEFEGPGTEFSDLIQ 327
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 420
EG GL++ EKF G RF++Y++WW++Q IRK++ + ++ IRLP ++ S+V E
Sbjct: 328 EGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPTHMAEASSRVKEC 387
Query: 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+R ++ N P E++A G+T ++E + + R +S+ V D T+Q D
Sbjct: 388 RRRLRRQLNRLPTNEEIASDTGLTTRRVEAAMSLPRYSVSLSGKVGC-TDVTYQEIMPD 445
>gi|282900041|ref|ZP_06308000.1| sigC (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195073|gb|EFA70011.1| sigC (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 432
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 115/204 (56%), Gaps = 22/204 (10%)
Query: 292 KSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SS 329
+ +L S+ G P+L WA G+ DLK L G +
Sbjct: 134 QERLVSELGHRPSLERWASTAGIKLVDLKPTLSEGKRRWAEIAKLTVEELDQIQSQGIQA 193
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWV 389
+E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+
Sbjct: 194 KEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWI 253
Query: 390 RQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLE 449
RQ I +AI SRTIRLP +I L+K+ +A+R QE +P EDLA + +T ++
Sbjct: 254 RQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLALELDMTPNQVR 313
Query: 450 RLIFITRMPLSMQQPVWADQDTTF 473
++ +S++ V D+DT
Sbjct: 314 EVLLRVPRSVSLETKVGKDKDTEL 337
>gi|427412602|ref|ZP_18902794.1| RNA polymerase sigma factor RpoD [Veillonella ratti
ACS-216-V-Col6b]
gi|425716409|gb|EKU79393.1| RNA polymerase sigma factor RpoD [Veillonella ratti
ACS-216-V-Col6b]
Length = 394
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 140/240 (58%), Gaps = 28/240 (11%)
Query: 232 NHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKE 291
++E +++ S+ + EG + +DP+R++L LL+ADEE L QI+
Sbjct: 89 SNEVREAKEVSLDLSIPEGVNIDDPVRMYLKEIGRVPLLSADEEILLAQQIE-------A 141
Query: 292 KSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGR 351
+K + + E+ +G +++KLI+ANLRLVV +AK+Y GR
Sbjct: 142 GAKDDASY---------------------KEMKAGEKAKQKLIDANLRLVVSIAKRYVGR 180
Query: 352 GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIY 411
G+ DL+QEG++GL+K+V+KF G +F++YA WW+RQ I +AI +RTIR+P ++
Sbjct: 181 GMLFLDLIQEGNLGLIKAVDKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMV 240
Query: 412 TLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
++K++ R +Q+ P E++A +GI+VE++ + I + P+S++ P+ ++D+
Sbjct: 241 ETINKLIRISRQLLQDKGREPLPEEIAEGMGISVERVREIQKIAQEPVSLETPIGEEEDS 300
>gi|170076898|ref|YP_001733536.1| group 2 sigma factor [Synechococcus sp. PCC 7002]
gi|169884567|gb|ACA98280.1| Group 2 sigma factor [Synechococcus sp. PCC 7002]
Length = 398
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 112/166 (67%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA+ +GLS ++L S L +G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 138 WAEQVGLSVKELDSILKAGAKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 197
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 427
++V+KF P G RF++YAYWW+RQ I +AI SRTIRLP ++ L+K+ +A+R Q
Sbjct: 198 RAVDKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNKIKKAQRQISQT 257
Query: 428 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+P +D+A+ + +T E++ ++ +S++ V D+DT
Sbjct: 258 QGCTPSLDDVAQALEMTPEQVREVLQKVPRSVSLEIRVGKDRDTEL 303
>gi|414077595|ref|YP_006996913.1| RpoD family RNA polymerase sigma factor SigC [Anabaena sp. 90]
gi|413971011|gb|AFW95100.1| RpoD family RNA polymerase sigma factor SigC [Anabaena sp. 90]
Length = 411
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 119/209 (56%), Gaps = 22/209 (10%)
Query: 287 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN------------------- 327
RL + + +L+++ G P+L WA G+S DLK L +G
Sbjct: 108 RLMEVQERLKAELGHRPSLERWATTAGISLPDLKPTLANGKRRWAEIANLTVEELEQVQT 167
Query: 328 ---SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384
++ +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++Y
Sbjct: 168 QGLQAKSHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTY 227
Query: 385 AYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGIT 444
AYWW+RQ I +AI SRTIRLP +I L+K+ +A+R QE +P EDL + +T
Sbjct: 228 AYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLGIELDMT 287
Query: 445 VEKLERLIFITRMPLSMQQPVWADQDTTF 473
++ ++ +S++ V D+DT
Sbjct: 288 PAQVREVLLRVPRSVSLETKVGKDKDTEL 316
>gi|37523928|ref|NP_927305.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
gi|35214934|dbj|BAC92300.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 344
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 124/211 (58%)
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSS 329
+T +EE L +IQ + ++ + +L + GR + A +G + L G +
Sbjct: 47 VTPEEEIHLARRIQAKLAIDGAREELAMRLGRPSPEEDVAAFMGRDPKALIEATRQGLWA 106
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWV 389
+ KLINANLRLVV +AK+Y GR + DL+QEG++GLM++ EKF P+ G RF++YA WW+
Sbjct: 107 QRKLINANLRLVVSIAKKYIGRNVPFLDLIQEGNIGLMRATEKFDPEKGYRFSTYATWWI 166
Query: 390 RQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLE 449
RQ+I +AI +RTIRLP ++ + KV R+ E P +++LA R+ I V+KL
Sbjct: 167 RQSITRAIANQARTIRLPIHMVEKVRKVRREMRMATLELGRRPSEDELASRLAIKVKKLR 226
Query: 450 RLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
+ ++R P+S+ PV ++ D + D
Sbjct: 227 TIQEVSRQPVSLDMPVGSEGDISLGEMIEDG 257
>gi|427722651|ref|YP_007069928.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427354371|gb|AFY37094.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 328
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 134/225 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE Q+Q+L+RL E+ L+ + RE T EWA+AI L
Sbjct: 18 DMVRTYLREIGRVPLLTHEEEIVYGKQVQELMRLLAERETLEERLERESTFSEWAEAIKL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++L+ + G ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SEKELRRAVAVGERAKRKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q RTIRLP +I L+K+ + +R Q+ +
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRQLSQDLGRAATI 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A + + EK+ ++R P+S+ V ++DT D
Sbjct: 198 AEIAEELELEPEKIREFFRVSRHPISLDVRVGDNKDTELMDLLED 242
>gi|158335266|ref|YP_001516438.1| RNA polymerase sigma factor SigC [Acaryochloris marina MBIC11017]
gi|158305507|gb|ABW27124.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 423
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 124/228 (54%), Gaps = 23/228 (10%)
Query: 269 LLTADEEF-ELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
LL EEF E I + RL + +L + G P+ WAK + DLK L G
Sbjct: 101 LLETREEFLESHPVIAEYARLTDVRDRLTAMLGHRPSFNRWAKEADIPVADLKPRLAEGK 160
Query: 328 SS----------------------REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365
++ +E +I ANLRLVV VAK+YQ RG+ L DL+QEG++G
Sbjct: 161 TAWAEKAELSNAELDQIVKQGIKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLG 220
Query: 366 LMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYI 425
L ++VEKF P G RF++YAYWW+RQ I +AI SRTIRLP +I L+K+ +A+R
Sbjct: 221 LERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLS 280
Query: 426 QEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
Q + ED+A+ + +T E++ L+ +S++ V D+DT
Sbjct: 281 QSKGRTASIEDIAQEMDMTPEQIRELLVRVPRSVSLEIKVGKDKDTEL 328
>gi|427734848|ref|YP_007054392.1| RNA polymerase, sigma subunit, RpsC/SigC [Rivularia sp. PCC 7116]
gi|427369889|gb|AFY53845.1| RNA polymerase, sigma subunit, RpsC/SigC [Rivularia sp. PCC 7116]
Length = 419
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 134/263 (50%), Gaps = 43/263 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q ++L + +
Sbjct: 62 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLKLRILLSEAASKGDELLAHYLKIIEAQ 121
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P++ WA G+ +LK L G ++
Sbjct: 122 ERLTSELGHRPSMKRWANTAGIEESELKGALSQGKRRWAETAKLTVQELEQIQTQGLQAK 181
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 182 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 241
Query: 391 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450
Q I +AI SRTIRLP +I L+K+ +A+R QE +P EDLA + +T ++
Sbjct: 242 QGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAVELEMTPAQVRE 301
Query: 451 LIFITRMPLSMQQPVWADQDTTF 473
++ +S++ V D+DT
Sbjct: 302 VLLRVPRSVSLETKVGKDKDTEL 324
>gi|365839537|ref|ZP_09380773.1| RNA polymerase sigma factor RpoD, partial [Anaeroglobus geminatus
F0357]
gi|364564505|gb|EHM42269.1| RNA polymerase sigma factor RpoD, partial [Anaeroglobus geminatus
F0357]
Length = 398
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 136/235 (57%), Gaps = 28/235 (11%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
+S +V + EG + +DP+R++L LL+A+EE L +I
Sbjct: 98 SSETVTVSLSVPEGVNIDDPVRMYLKEIGRVPLLSAEEEITLAKRI-------------- 143
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
E A G + E+ +GN +++KL +ANLRLVV +AK+Y GRG+
Sbjct: 144 ----------EAGGAEGATA----EEISTGNIAKKKLTDANLRLVVSIAKRYVGRGMLFL 189
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSK 416
DL+QEG++GL+K+VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K
Sbjct: 190 DLIQEGNLGLLKAVEKFDYSKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 249
Query: 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
++ R +QE P E++A ++G+ VE++ ++ I + P+S++ P+ ++D+
Sbjct: 250 LIRISRQLLQEKGREPLPEEIAGKMGVPVERVREIMKIAQEPVSLETPIGEEEDS 304
>gi|157414236|ref|YP_001485102.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157388811|gb|ABV51516.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 344
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 147/247 (59%), Gaps = 5/247 (2%)
Query: 232 NHETYNSRKASVKKKLS-----EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286
+H T+ S + ++ KL+ + + D +R +L LL+ ++E L Q+Q+ +
Sbjct: 7 HHLTFMSSETIIENKLASIATLKSSNDVDLVRSYLRDIGRVPLLSHEQEITLGRQVQEYM 66
Query: 287 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAK 346
+E+ + + G +P++ E + + LS +K L +G ++E+++ ANLRLVV VAK
Sbjct: 67 EVERAELEFIELTGDKPSIDELSTKLNLSTSIIKKRLRAGQRAKERMVAANLRLVVSVAK 126
Query: 347 QYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 406
+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW+RQ I +AI + SR IRL
Sbjct: 127 KYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWWIRQGITRAIAEKSRAIRL 186
Query: 407 PENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVW 466
P +I +L+K+ + +R QE + +P +LA+ V + + ++ L+ P+S++ V
Sbjct: 187 PIHITEMLNKLKKGQRELSQEMSRTPTVSELAKYVELPEDDVKDLMCKAGQPVSLETKVG 246
Query: 467 ADQDTTF 473
+DT
Sbjct: 247 DGEDTVL 253
>gi|428774876|ref|YP_007166663.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428689155|gb|AFZ42449.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 328
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 135/225 (60%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E L Q+Q +++L ++K +L+ + GRE T EW + G+
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIILGKQVQKMMKLIEQKEELEEELGREATDEEWTQKAGI 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L+ + GN ++ K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 SQEELQKAMREGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +R IRLP +I L+K+ + +R Q+ +
Sbjct: 138 PTRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELAQKLGRNATP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A +G+ ++ + I R P+S+ V +QDT D
Sbjct: 198 TEIAEELGLEPSQIREYLSIARQPISLDVRVGDNQDTELSELLED 242
>gi|365842430|ref|ZP_09383441.1| RNA polymerase sigma factor RpoD [Flavonifractor plautii ATCC
29863]
gi|364575646|gb|EHM53025.1| RNA polymerase sigma factor RpoD [Flavonifractor plautii ATCC
29863]
Length = 453
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 136/232 (58%), Gaps = 18/232 (7%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L + F +DP+R++L LLT DEE +L QD+ + K +++ +
Sbjct: 138 LVDSFGIDDPVRMYLKEIGKVNLLTPDEEIQLA---QDMGAGDAAKEQMEE--------L 186
Query: 307 EWAKAIGLSCRD-------LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
E A+ G L+ + G +++++L ANLRLVV +AK+Y GRG+ DL+
Sbjct: 187 EQARKNGEEVSLTEEEEKELRRLVKRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLI 246
Query: 360 QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLE 419
QEG++GL+K+VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++KV+
Sbjct: 247 QEGNLGLIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIR 306
Query: 420 AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
R +QE H P E++A + + V+K+ ++ I + P+S++ P+ ++D+
Sbjct: 307 VSRQLLQELGHDPSPEEIAEEMSMPVDKVREILKIAQEPVSLETPIGEEEDS 358
>gi|411117153|ref|ZP_11389640.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoriales
cyanobacterium JSC-12]
gi|410713256|gb|EKQ70757.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoriales
cyanobacterium JSC-12]
Length = 414
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 127/225 (56%), Gaps = 25/225 (11%)
Query: 271 TADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK---------- 320
TAD+E IQ ++L + +L + G P+L WA G++ DLK
Sbjct: 98 TADKE---AGAIQQYVKLIEAHDRLTAHLGHRPSLERWATEAGVTVADLKPIMAEGKREW 154
Query: 321 --------SELHS----GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
EL + G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL +
Sbjct: 155 AKVAKLSVEELETIQMEGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLER 214
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+VEKF P G RF++YAYWW+RQ I +AI SRTIRLP +I L+K+ +A+R QE
Sbjct: 215 AVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEK 274
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+ ED+A+ + +T ++ ++ +S++ V ++DT
Sbjct: 275 GRTATMEDIAKELDMTPPQVREVLLRVPRSVSLETKVGKEKDTEL 319
>gi|186681474|ref|YP_001864670.1| RNA polymerase sigma factor SigC [Nostoc punctiforme PCC 73102]
gi|186463926|gb|ACC79727.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 416
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 119/210 (56%), Gaps = 22/210 (10%)
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN------------------ 327
+RL + + +L S+ G P+L WA + DL+ L +G
Sbjct: 112 LRLVEVQERLTSELGHRPSLERWAATADIVLSDLRPTLANGKRRWAEIAKLTVEELEQVQ 171
Query: 328 ----SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++
Sbjct: 172 SQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFST 231
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGI 443
YAYWW+RQ I +AI SRTIRLP +I L+K+ +A+R QE +P EDLA + +
Sbjct: 232 YAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLATELEM 291
Query: 444 TVEKLERLIFITRMPLSMQQPVWADQDTTF 473
T ++ ++ +S++ V D+DT
Sbjct: 292 TPTQVREVLLRVPRSVSLETKVGKDKDTEL 321
>gi|158337702|ref|YP_001518878.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158307943|gb|ABW29560.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 118/203 (58%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL +EE Q+Q + L+ K LQ REPT EWA +S L+ EL G+
Sbjct: 23 LLNHEEEIIFGKQVQRFVALQDLKQDLQEHLDREPTQAEWADKAEISVSQLQKELKLGHK 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+ K++ +NLRLVV +AK+Y + DL+QEG++GL + VEKF P G RF++YAYWW
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYAYWW 142
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ + +AI + RTIRLP +I LSK+ + +R Q+ + P ++LA + + +K+
Sbjct: 143 IRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTVQELAVEMDLAPKKI 202
Query: 449 ERLIFITRMPLSMQQPVWADQDT 471
E + R +S+ + Q+T
Sbjct: 203 EDYLNYARRSISLDIQIGDQQNT 225
>gi|414079485|ref|YP_007000909.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
gi|413972764|gb|AFW96852.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
Length = 389
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 133/211 (63%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L +++ ++ L+ Q G +P+ ++ A + ++ + L+S L+ G
Sbjct: 91 LLKPDEEVELARRVRFLEEVKELQAALELQLGAQPSKVQVASQLEITEKQLESRLYQGRV 150
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRASEKFDPDKGYKFSTYAYWW 210
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIRLP +I L+K+ +A+R Q+ +P + ++A + ITV +L
Sbjct: 211 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPTEAEMAEALEITVHQL 270
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+L + R LS+ V ++DT D
Sbjct: 271 RQLQQLRRQALSLNHRVGKEEDTELMDLLED 301
>gi|254421571|ref|ZP_05035289.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196189060|gb|EDX84024.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 390
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 131/232 (56%), Gaps = 6/232 (2%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRL----EKEKSKLQSQFGREPTL--IE 307
D +R +L LL+ ++E L Q+Q ++ L E+ +KL G E + +
Sbjct: 73 TDAVRSYLHEIGRVPLLSHEDEIVLGKQVQKMMALLAIKEELAAKLSEAEGEEAEVSNAD 132
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA A + +L + G S+ K+I ANLRLVV VAK+YQ R + DL+QEG++GL
Sbjct: 133 WAAAASIPESELDHHMRRGQRSKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQEGTLGLE 192
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 427
+ VEKF P G +F++YAYWW+RQ I +AI Q +RTIRLP +I L+K+ +R Q+
Sbjct: 193 RGVEKFDPMKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRVQRELSQK 252
Query: 428 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
SP+ ++ + + + +++ + I R P+S+ + +QDT Q D
Sbjct: 253 LGRSPNAAEIGQELELEPKQVREYLSIARQPISLDVRIGDNQDTELQDLLED 304
>gi|359462082|ref|ZP_09250645.1| RNA polymerase sigma factor SigC [Acaryochloris sp. CCMEE 5410]
Length = 423
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 124/228 (54%), Gaps = 23/228 (10%)
Query: 269 LLTADEEF-ELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
LL EEF + I + RL + +L + G P+ WAK + DLK L G
Sbjct: 101 LLETREEFLDSHPAIAEYARLTDVRDRLTAMLGHRPSFNRWAKEADIPVADLKPRLAEGK 160
Query: 328 SS----------------------REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365
++ +E +I ANLRLVV VAK+YQ RG+ L DL+QEG++G
Sbjct: 161 TAWAEKAELSNAELDQIVKQGIKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLG 220
Query: 366 LMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYI 425
L ++VEKF P G RF++YAYWW+RQ I +AI SRTIRLP +I L+K+ +A+R
Sbjct: 221 LERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLS 280
Query: 426 QEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
Q + ED+A+ + +T E++ L+ +S++ V D+DT
Sbjct: 281 QSKGRTASIEDIAQEMDMTPEQIRELLVRVPRSVSLEIKVGKDKDTEL 328
>gi|373118497|ref|ZP_09532625.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium
7_1_58FAA]
gi|371666996|gb|EHO32129.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium
7_1_58FAA]
Length = 448
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 136/232 (58%), Gaps = 18/232 (7%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L + F +DP+R++L LLT DEE +L QD+ + K +++ +
Sbjct: 133 LVDSFGIDDPVRMYLKEIGKVNLLTPDEEVQLA---QDMGAGDAAKEQMEE--------L 181
Query: 307 EWAKAIGLSCRD-------LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
E A+ G L+ + G +++++L ANLRLVV +AK+Y GRG+ DL+
Sbjct: 182 EQARKNGEEVSITEEEEKELRRLVKRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLI 241
Query: 360 QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLE 419
QEG++GL+K+VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++KV+
Sbjct: 242 QEGNLGLIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIR 301
Query: 420 AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
R +QE H P E++A + + V+K+ ++ I + P+S++ P+ ++D+
Sbjct: 302 VSRQLLQELGHDPSPEEIAEEMSMPVDKVREILKIAQEPVSLETPIGEEEDS 353
>gi|229828460|ref|ZP_04454529.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
gi|229793054|gb|EEP29168.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
Length = 614
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 135/218 (61%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +++ ++ +++ L+ + E +
Sbjct: 302 DDPVRMYLKEIGKVHLLTAEEEVDLAQKMEKGLKADEQIEILREEIRSGDLSEEDMMNLE 361
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ LK++ G +++KL ANLRLVV +AK+Y GRG+ DL+QEG++GL+K+VEKF
Sbjct: 362 AQIKILKNDSAVGERAKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKF 421
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P
Sbjct: 422 DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPS 481
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E++AR + T +++ ++ I++ P+S++ P+ ++D+
Sbjct: 482 PEEIAREMETTPDRVREILKISQEPVSLETPIGEEEDS 519
>gi|123967051|ref|YP_001012132.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9515]
gi|123201417|gb|ABM73025.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9515]
Length = 333
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 135/219 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E L Q+Q+ +++E+ + ++ +P++ E A + L
Sbjct: 24 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAELEIIELTDNKPSVEELAAKLNL 83
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +K L +G ++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF
Sbjct: 84 SSSQIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 143
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI + SR IRLP +I +L+K+ + +R QE + +P
Sbjct: 144 PARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTI 203
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+LA+ V + + ++ L+ P+S++ V +DT
Sbjct: 204 SELAKYVELPEDDVKDLMCKAGQPVSLETKVGDGEDTVL 242
>gi|428208337|ref|YP_007092690.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010258|gb|AFY88821.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 400
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 130/211 (61%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ADEE EL +++ L+ +E+ + LQ Q R+P E +G+S + L+ +L+ G
Sbjct: 102 LLKADEEVELARRVRFLVEVEETQRGLQKQLKRQPNREELIAELGISDKQLEHQLYLGRV 161
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 162 AKRKMIRSNLRLVVSIAKRYLNRGLPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 221
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIRLP +I L+K+ + +R Q+ +P + +LA + + E+L
Sbjct: 222 IRQAITRAIANDARTIRLPIHIVEKLNKLKKYQRELKQKLQRNPSEIELAAALEVPPEQL 281
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+L + R LS+ V ++DT D
Sbjct: 282 RQLQQLRRKALSLNHRVGKEEDTELVDLLED 312
>gi|291451171|ref|ZP_06590561.1| RNA polymerase sigma factor [Streptomyces albus J1074]
gi|291354120|gb|EFE81022.1| RNA polymerase sigma factor [Streptomyces albus J1074]
Length = 397
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 108/165 (65%)
Query: 316 CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
RDL+ + G ++ +LI ANLRLVV VAK+Y GRG+++ DL+QEG++GL+++VEKF
Sbjct: 147 ARDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQEGNLGLIRAVEKFDY 206
Query: 376 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKE 435
G +F++YA WW+RQ + +A+ +RTIR+P ++ L+++V+ +R +QE P E
Sbjct: 207 TRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRTQRALLQEAGREPAAE 266
Query: 436 DLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
++ R+G++ EK+E ++ + P+S+ PV + D DA
Sbjct: 267 EVGERLGLSAEKVEEVLRLAHEPISLHAPVGGEDDVFLGDLIEDA 311
>gi|225377779|ref|ZP_03755000.1| hypothetical protein ROSEINA2194_03430 [Roseburia inulinivorans DSM
16841]
gi|225210363|gb|EEG92717.1| hypothetical protein ROSEINA2194_03430 [Roseburia inulinivorans DSM
16841]
Length = 426
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 140/223 (62%), Gaps = 2/223 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G DP+R++L LL+A+EE EL ++ +++ + L+S+ E E
Sbjct: 111 DGVSIEDPVRMYLKEIGKVPLLSAEEEIELAKNMEAGAVAKEKIAILKSR--EEKATEEE 168
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
I ++L+ +L +G+ ++++L ANLRLVV +AK+Y GRG+ DL+QEG++GL+K
Sbjct: 169 LAEIKEEIKNLQKDLDAGDEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIK 228
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE
Sbjct: 229 AVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEL 288
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
P E++A + + VE++ ++ I++ P+S++ P+ ++D+
Sbjct: 289 GREPSPEEIAAEMNMPVERVREILKISQEPVSLETPIGEEEDS 331
>gi|33862185|ref|NP_893746.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33634403|emb|CAE20088.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 333
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 135/219 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E L Q+Q+ +++E+ + ++ +P+ E A+ + L
Sbjct: 24 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAEIEIMELTDNKPSPEELAEKLNL 83
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +K L +G ++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF
Sbjct: 84 STSQIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 143
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI + SR IRLP +I +L+K+ + +R QE + +P
Sbjct: 144 PARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTI 203
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+LA+ V + + ++ L+ P+S++ V +DT
Sbjct: 204 SELAKYVELPEDDVKDLMCKAGQPVSLETKVGDGEDTVL 242
>gi|187736115|ref|YP_001878227.1| RpoD family RNA polymerase sigma-70 subunit [Akkermansia
muciniphila ATCC BAA-835]
gi|187426167|gb|ACD05446.1| RNA polymerase, sigma 70 subunit, RpoD family [Akkermansia
muciniphila ATCC BAA-835]
Length = 688
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 130/212 (61%), Gaps = 3/212 (1%)
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKA--IGLSCRDLKSELHSGNSSR 330
DE + + ++Q + LE + +L+ E L W A +G + ++L+ L ++
Sbjct: 390 DEARDRVLRMQKKVALEPDNKELKEHLA-ELELRMWMTADEMGDAYQELRKWLREARRAK 448
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
++++ ANLRLV+ +AK+Y RG+S DL+QEG+MGLMK+VEKF+ + G +F++YA WW+R
Sbjct: 449 DEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIR 508
Query: 391 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450
Q I ++I +RTIR+P ++ ++K++ ++ +QE P E++A + + VE++
Sbjct: 509 QAITRSIADQARTIRIPVHMIETINKLMRVQKQLVQEYGREPTPEEIAEEIHLPVERVRS 568
Query: 451 LIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++ + + P+S+Q PV DT+F D A
Sbjct: 569 VLKMAQQPISLQAPVGDSDDTSFGDFIEDKAA 600
>gi|443316147|ref|ZP_21045603.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784247|gb|ELR94131.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 318
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 131/218 (60%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D ++ +L LLT ++E Q++ ++ + + L G EP+ WA+ G
Sbjct: 7 SDTIQAYLKSIGRVPLLTHEQEINYGKQVKQMMVVLALREDLMEPLGAEPSWAAWAEETG 66
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L L++++ +G +++ K+I ANLRLVV +AK+Y R + L DL+QEGS+GL ++VEKF
Sbjct: 67 LDVETLQAQVAAGEAAKSKMIEANLRLVVSIAKKYTDRNLDLLDLVQEGSIGLNRAVEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ + +AI + SRT+RLP ++ ++KV A+R Q+
Sbjct: 127 DPAKGYRFSTYAYWWIRQAMTRAIAEKSRTVRLPIHVTETINKVKRAQRQLSQQLGRMAS 186
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E+++ + +T +++ + R PLS++ V + DT
Sbjct: 187 VEEVSTFLDLTSQQVRDSLRHARRPLSLETRVGENNDT 224
>gi|158336372|ref|YP_001517546.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158306613|gb|ABW28230.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 121/203 (59%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ++E Q+Q L L++ K +LQ REPT EWA+ +S L+ EL G+
Sbjct: 23 LLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQKEWAEKAQVSVAQLQKELKLGHK 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+ K++ +NLRLVV +AK+Y + DL+QEG++GL + VEKF P G RF++YAYWW
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYAYWW 142
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ + +AI + RTIRLP +I LSK+ + +R Q+ + P ++LA + + +K+
Sbjct: 143 IRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTVQELAVEMDLAPKKI 202
Query: 449 ERLIFITRMPLSMQQPVWADQDT 471
E + R +S+ + Q+T
Sbjct: 203 EDYLNYARRSISLDIQIGDQQNT 225
>gi|123969371|ref|YP_001010229.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123199481|gb|ABM71122.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. AS9601]
Length = 344
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 135/219 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E L Q+Q+ + +E+ + ++ G +P++ E + + L
Sbjct: 35 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMEVERIELEIIELTGEKPSIDELSAKLNL 94
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ +K L +G ++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF
Sbjct: 95 TTSTIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 154
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI + SR IRLP +I +L+K+ + +R QE + +P
Sbjct: 155 PARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTV 214
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+LA+ V + + ++ L+ P+S++ V +DT
Sbjct: 215 SELAKYVELPEDDVKDLMCKAGQPVSLETKVGDGEDTVL 253
>gi|428305801|ref|YP_007142626.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428247336|gb|AFZ13116.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 373
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 130/207 (62%), Gaps = 5/207 (2%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
N+ A +K LSE D + F LL A+EE +L Q+Q ++++E+ + +L+
Sbjct: 48 NNGGAKYQKNLSE-----DTVGAFFKEMARYPLLKAEEEVDLANQVQFILQIEEIEERLE 102
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+Q +P+ E A+++G++ + L L+ ++ K+I +NLRLVV +AK+Y RG++
Sbjct: 103 AQLNHKPSKAEIAESLGMNEKQLDHRLYQSRVAKRKMIRSNLRLVVSIAKRYLNRGVAFL 162
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSK 416
DL+QEG++GL ++ EKF P G +F++YAYWW+RQ I + I SRTIRLP +I L+K
Sbjct: 163 DLIQEGALGLNRAAEKFDPDKGYKFSTYAYWWIRQAITRTIANDSRTIRLPIHIVEKLNK 222
Query: 417 VLEAKRLYIQEGNHSPDKEDLARRVGI 443
+ +A+R QE + +P + +LA + I
Sbjct: 223 LKKAQRNLKQELHRNPTEVELAEALEI 249
>gi|332709863|ref|ZP_08429819.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332351234|gb|EGJ30818.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332651114|gb|AEE81158.1| putative RNA polymerase sigma subunit [Moorea producens 3L]
Length = 417
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 135/264 (51%), Gaps = 44/264 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ---DLIRLEKEKS----------------- 293
D +RL+L +LL DEE ++Q L+RL KS
Sbjct: 59 TDLVRLYLQEIGRVRLLRRDEEVSEAQKVQRYMKLLRLRNNKSAISEDKVMERFVHLIEI 118
Query: 294 --KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SS 329
+L SQ G P+L WA A G+ LK + +G +
Sbjct: 119 HDRLASQLGHRPSLERWATAAGIDVSQLKPSMSAGKLRWAELAELTSKELEQVQAEGLQA 178
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWV 389
+E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+
Sbjct: 179 KEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWI 238
Query: 390 RQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLE 449
RQ I +AI SRTIRLP +I L+K+ +A+R QE + +D+A + +T ++
Sbjct: 239 RQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQERGRTATIDDIAVELEMTAAQVR 298
Query: 450 RLIFITRMPLSMQQPVWADQDTTF 473
++ +S++ V ++DT
Sbjct: 299 EVLLRVPRSVSLEIKVGKERDTEL 322
>gi|359459297|ref|ZP_09247860.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 121/203 (59%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ++E Q+Q L L++ K +LQ REPT EWA+ +S L+ EL G+
Sbjct: 23 LLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQQEWAEKAQVSVAQLQKELKLGHK 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+ K++ +NLRLVV +AK+Y + DL+QEG++GL + VEKF P G RF++YAYWW
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYAYWW 142
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ + +AI + RTIRLP +I LSK+ + +R Q+ + P ++LA + + +K+
Sbjct: 143 IRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTVQELAVEMDLAPKKI 202
Query: 449 ERLIFITRMPLSMQQPVWADQDT 471
E + R +S+ + Q+T
Sbjct: 203 EDYLNYARRSISLDIQIGDQQNT 225
>gi|312898762|ref|ZP_07758151.1| RNA polymerase sigma factor RpoD [Megasphaera micronuciformis
F0359]
gi|310620193|gb|EFQ03764.1| RNA polymerase sigma factor RpoD [Megasphaera micronuciformis
F0359]
Length = 437
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 137/237 (57%), Gaps = 30/237 (12%)
Query: 237 NSRKASVKKKLS--EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
+S +V LS EG + +DP+R++L LL+A+EE L +I+
Sbjct: 135 DSENETVNVNLSVPEGVNIDDPVRMYLKEIGRVPLLSAEEEITLAKRIE----------- 183
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
S G P E+ +GN +++KL +ANLRLVV +AK+Y GRG+
Sbjct: 184 AGSAEGATP-----------------EEVSAGNIAKKKLTDANLRLVVSIAKRYVGRGML 226
Query: 355 LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLL 414
DL+QEG++GL+K+VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ +
Sbjct: 227 FLDLIQEGNLGLLKAVEKFDYSKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETI 286
Query: 415 SKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+K++ R +Q+ P E++A ++G+ VE++ ++ I + P+S++ P+ ++D+
Sbjct: 287 NKLIRISRQLLQDKGREPLPEEIAEKMGVPVERVREIMKIAQEPVSLETPIGEEEDS 343
>gi|434393099|ref|YP_007128046.1| RNA polymerase, sigma subunit, RpsC/SigC [Gloeocapsa sp. PCC 7428]
gi|428264940|gb|AFZ30886.1| RNA polymerase, sigma subunit, RpsC/SigC [Gloeocapsa sp. PCC 7428]
Length = 413
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 139/263 (52%), Gaps = 43/263 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------- 294
D +RL+L LL DEE ++Q IRL + ++K
Sbjct: 56 TDLVRLYLQEIGRVHLLGRDEEVSEAQKVQRYIRLVELRAKAAKNGDEIMVPYEQLMAVQ 115
Query: 295 --LQSQFGREPTL--------IE--------------WAKAIGLSCRDLKSELHSGNSSR 330
L S+ G P+L IE WA+ GL+ ++L+ GN ++
Sbjct: 116 ERLTSELGHRPSLERWATSAGIEVAELKPLLIKGKRRWAEITGLTVQELEQIQSEGNRAK 175
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++V+KF P G RF++YAYWW+R
Sbjct: 176 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVDKFDPTKGYRFSTYAYWWIR 235
Query: 391 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450
Q I +AI SRTIRLP +I L+K+ +A+R QE +P +D+A + +T ++
Sbjct: 236 QGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTPTIDDIAAELEMTPPQVRE 295
Query: 451 LIFITRMPLSMQQPVWADQDTTF 473
++ +S++ V ++DT
Sbjct: 296 VLLRVPRSVSLETKVGKEKDTEL 318
>gi|395236960|ref|ZP_10415090.1| RNA polymerase sigma factor sigB [Turicella otitidis ATCC 51513]
gi|394487844|emb|CCI83178.1| RNA polymerase sigma factor sigB [Turicella otitidis ATCC 51513]
Length = 339
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 127/226 (56%), Gaps = 12/226 (5%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTAD+E EL QI+ + E + R AK
Sbjct: 40 DLVRVYLNGIGKTDLLTADDEVELAKQIEVGLYAEHVLADHDEPLTR-------AKK--- 89
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 90 --RDLKVLARQGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 147
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
Q G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q P
Sbjct: 148 YQKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRLKRELYQNLGREPSN 207
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E+LA G+ EK+E L+ +R P+S+ PV AD++ DA
Sbjct: 208 EELAGESGLPEEKVELLLRQSRDPVSLDMPVGADEEAPLGDFIEDA 253
>gi|423350097|ref|ZP_17327750.1| RNA polymerase sigma factor sigB [Turicella otitidis ATCC 51513]
gi|404387959|gb|EJZ83050.1| RNA polymerase sigma factor sigB [Turicella otitidis ATCC 51513]
Length = 329
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 127/226 (56%), Gaps = 12/226 (5%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTAD+E EL QI+ + E + R AK
Sbjct: 30 DLVRVYLNGIGKTDLLTADDEVELAKQIEVGLYAEHVLADHDEPLTR-------AKK--- 79
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 80 --RDLKVLARQGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
Q G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q P
Sbjct: 138 YQKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRLKRELYQNLGREPSN 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E+LA G+ EK+E L+ +R P+S+ PV AD++ DA
Sbjct: 198 EELAGESGLPEEKVELLLRQSRDPVSLDMPVGADEEAPLGDFIEDA 243
>gi|452822634|gb|EME29651.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 601
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 137/253 (54%), Gaps = 6/253 (2%)
Query: 203 PLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLW 262
PLE+++ + ER ++K E+ +R +V K F + + FL
Sbjct: 205 PLEDIRHLEKQ---EREILSMAITKEDAMLIESIVNRPTTVSTK---QFKKGSSMGAFLK 258
Query: 263 GPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 322
+ LL ++ L +I+ L + +L+ Q+GREP +EWAK++ +S +L
Sbjct: 259 EIGSVPLLNENQVISLAREIRKLALWNATRIQLRQQYGREPDRVEWAKSLNMSSEELTRN 318
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +RE L+ ANLRLVV VAKQ+ RG+S+ DL+QEGS+GL+K E+F + G RF+
Sbjct: 319 LLRAQRARESLVAANLRLVVSVAKQFTNRGLSMQDLIQEGSIGLIKGAERFDYRRGFRFS 378
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG 442
+YA WW+RQ +++AI SR IR+P I L ++ A+ P +LA +
Sbjct: 379 TYAMWWIRQAMQRAIADTSRPIRIPSTISDLSVQIYRARLELSSSLGRDPTDAELADCLD 438
Query: 443 ITVEKLERLIFIT 455
I+V++L+ + T
Sbjct: 439 ISVQRLQDVKLYT 451
>gi|335429392|ref|ZP_08556290.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
gi|334889402|gb|EGM27687.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
Length = 398
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 134/220 (60%), Gaps = 10/220 (4%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+R++L +LL+ADEE I+ + +++ L+++ +
Sbjct: 95 NDPVRMYLKEIGKVELLSADEEIRYAKDIEAGLMADEQIKDLKAEDALDAD--------- 145
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ R LK + G S+ +L+ ANLRLVV +AK++ GRG+ DL+QEG+MGLMK+V+KF
Sbjct: 146 -TERQLKDLIMKGEISKMRLVEANLRLVVSIAKRHVGRGMLFLDLIQEGNMGLMKAVDKF 204
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
+ G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R QE P
Sbjct: 205 DYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRQLTQELGRDPL 264
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
E++A+++ IT +K+ ++ I++ P+S++ PV + D+
Sbjct: 265 PEEIAKKMDITPDKVREILKISQDPISLESPVGEEDDSNL 304
>gi|339443528|ref|YP_004709533.1| hypothetical protein CXIVA_24640 [Clostridium sp. SY8519]
gi|338902929|dbj|BAK48431.1| hypothetical protein CXIVA_24640 [Clostridium sp. SY8519]
Length = 435
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 140/224 (62%), Gaps = 13/224 (5%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKE-KSKLQSQFGREPTLIE 307
+G + +DP+R++L LLTA+EE +L +++ I +K + ++Q E
Sbjct: 129 DGINIDDPVRMYLKEIGKVPLLTAEEEIDLAMKMEAGINADKALEEDTENQLSEEEK--- 185
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
K + ++ R+ G +++++L ANLRLVV +AK+Y GRG+ DL+QEG++GL+
Sbjct: 186 --KQLTITSRE-------GENAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLI 236
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 427
K+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE
Sbjct: 237 KAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQE 296
Query: 428 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
P E++A+ + + VE++ ++ I++ P+S++ P+ +QD+
Sbjct: 297 LGREPLPEEIAKEMEMPVERVREILKISQEPVSLETPIGEEQDS 340
>gi|440680152|ref|YP_007154947.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677271|gb|AFZ56037.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 377
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 133/211 (63%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ADEE EL +++ L ++ ++ L+ + G++P+ E A ++ + L+S L+ G
Sbjct: 79 LLKADEEVELARRVRFLEEVKDLQAALELELGQQPSKNEVASKFEMTEKQLESRLYQGRV 138
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 198
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIRLP +I L+K+ +A+R Q+ +P + ++A + I+V++L
Sbjct: 199 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPSEAEMAESLEISVQQL 258
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+L + R LS+ V ++DT D
Sbjct: 259 RQLQQLRRQALSLNHRVGKEEDTELMDLLED 289
>gi|113475621|ref|YP_721682.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110166669|gb|ABG51209.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 410
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 110/168 (65%)
Query: 306 IEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365
+ WAK GL+ ++L+ G +R ++I+ NLRLVV +AK+YQ RG+ L DL+QEG++G
Sbjct: 148 LRWAKLTGLNVKELEQIQTEGIEARHQMISTNLRLVVSIAKKYQNRGVELLDLIQEGTLG 207
Query: 366 LMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYI 425
L ++VEKF PQ G RF++YAYWW+RQ I +AI SRTIRLP ++ L+K+ + ++
Sbjct: 208 LERAVEKFDPQRGYRFSTYAYWWIRQGITRAIATQSRTIRLPIHVSEKLNKIKKVQQKIF 267
Query: 426 QEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
QE ++ E++AR + IT ++ ++ +S++ V D+DT
Sbjct: 268 QEKGYTAKVEEIARELKITAAQVREVLVKIPHSVSLETKVGRDRDTEL 315
>gi|300868700|ref|ZP_07113311.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
gi|300333261|emb|CBN58503.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
Length = 462
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 138/271 (50%), Gaps = 44/271 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRL--------EKE-------------K 292
D +RL+L +LL DEE ++Q IRL E+E +
Sbjct: 103 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYIRLLELRNTAAEQEEGLIRRYVELIEAR 162
Query: 293 SKLQSQFGREPTL-----------------------IEWAKAIGLSCRDLKSELHSGNSS 329
+L +Q G P+L WA+ G++ L + G +
Sbjct: 163 DRLAAQLGHRPSLERWAALAGVAEVSELKRIMAEGKRRWAELAGVTLEALDQMITEGIQA 222
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWV 389
++ +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+
Sbjct: 223 KDHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYAYWWI 282
Query: 390 RQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLE 449
RQ I +AI SRTIRLP +I L+K+ +A+R QE + ED+A +G+T ++
Sbjct: 283 RQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTASIEDIAAELGMTAPQVR 342
Query: 450 RLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
++ +S++ V ++DT DA
Sbjct: 343 EVLLRVPRSVSLETKVGNEKDTELGDLLDDA 373
>gi|402829507|ref|ZP_10878383.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
gi|402284488|gb|EJU32991.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
Length = 394
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 135/227 (59%), Gaps = 23/227 (10%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ-------DLIRLEKEKSKLQSQFGREPTLI 306
DP+R++L LLTA EE +L +I+ +L R E E +L + R T +
Sbjct: 90 GDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVAATAELERAEDEGIELNRRDKRRLTRV 149
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
E A+GL + ++LI ANLRLVV +AK+Y GRG+ DL+QEG++GL
Sbjct: 150 E---AVGLDAK-------------QQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 193
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
+++VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q
Sbjct: 194 IRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQ 253
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+ N P E++ ++G++ E++ + I++ P+S++ P+ ++D+
Sbjct: 254 DLNRDPTPEEIGEKMGLSAERVREIQKISQEPVSLETPIGEEEDSQL 300
>gi|225163701|ref|ZP_03726004.1| RNA polymerase, sigma 70 subunit, RpoD family [Diplosphaera
colitermitum TAV2]
gi|224801692|gb|EEG19985.1| RNA polymerase, sigma 70 subunit, RpoD family [Diplosphaera
colitermitum TAV2]
Length = 631
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 114/168 (67%), Gaps = 1/168 (0%)
Query: 306 IEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365
IE A+ I + R + + ++ +++ ANLRLV+ +AK+Y RG+S DL+QEG+MG
Sbjct: 310 IEPAQLIEV-VRKTNVHIREAHQAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMG 368
Query: 366 LMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYI 425
LMK+VEKF+ + G +F++YA WW+RQ I ++I +RTIR+P ++ L+KV++ ++ +
Sbjct: 369 LMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLL 428
Query: 426 QEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
QE H P E++A + + VE++++++ + + P+S+Q PV DT+F
Sbjct: 429 QEFGHEPTPEEVADEMNLPVERVQQIMKMAQQPISLQSPVGDGDDTSF 476
>gi|412993395|emb|CCO16928.1| RNA polymerase sigma factor RpoD [Bathycoccus prasinos]
Length = 733
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 140/237 (59%), Gaps = 12/237 (5%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF--GREP--------- 303
D ++++L + LL A+EE +L +IQDL+ LE +L ++ G +P
Sbjct: 378 DSMKVYLKEIGSVSLLNANEEVQLARKIQDLMNLETTYKELVAKVAEGNDPIAQTHGDKV 437
Query: 304 TLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGS 363
T WA+ +GL+ +L+ L G +++ +I ANLRLVV +AK+Y R +S DL+QEG
Sbjct: 438 TKSMWARELGLTEFELEMRLTEGKNAKNHMIQANLRLVVSIAKRYANRNMSFQDLIQEGC 497
Query: 364 MGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRL 423
+GL++ EKF + G +F++YA+WW+RQ + ++I SRTIRLP +++ ++S++ + ++
Sbjct: 498 VGLIRGAEKFDFERGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRMNKLEQK 557
Query: 424 YIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT-TFQSTFLD 479
+I + E+++ + + K+ ++ P+S+ Q V AD D T + T +D
Sbjct: 558 FIVQNGREATLEEISAMMEMPQVKITQIKKAAMAPVSLAQAVGADDDKRTVEDTLVD 614
>gi|428780048|ref|YP_007171834.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428694327|gb|AFZ50477.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 375
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 113/175 (64%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L +E ++ +L + G PT E A + LS ++L+ +LH G
Sbjct: 78 LLQPDEEIELAQKVKFLADMENKRQELAIESGSSPTKEELAATVSLSVKELERKLHQGRL 137
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ ++I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYWW
Sbjct: 138 AKRQMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYWW 197
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGI 443
+RQ I + I +RTIRLP +I L+K+ + +R QE +P +E+LA + I
Sbjct: 198 IRQAITRTIANDARTIRLPIHIVEKLNKLKKVQRDLKQELQRNPTEEELAAGLDI 252
>gi|159896548|ref|YP_001542795.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159889587|gb|ABX02667.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 400
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 131/227 (57%), Gaps = 14/227 (6%)
Query: 248 SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE 307
+EG ND +RL+L LL ++E EL ++D + ++E LIE
Sbjct: 94 NEGISVNDTVRLYLREIGLVPLLKGEQEVELARAMEDGDKAQQE-------------LIE 140
Query: 308 WAKAIGLSCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
+ R L+ + G +RE L ANLRLVV VAK+Y GRG+SL DL+QEG++GL
Sbjct: 141 NDHTLSDVERLALRRRIDRGEQAREHLTTANLRLVVSVAKKYIGRGLSLLDLIQEGNVGL 200
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
+++VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ +++++ R Q
Sbjct: 201 IRAVEKFNYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRMMRTARRLTQ 260
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
E P E+LA+ + +TVEK+ + + P+S++ PV ++D+
Sbjct: 261 ENGREPSDEELAQALDLTVEKVRSIRKTSMEPVSLETPVGQEEDSQL 307
>gi|416411729|ref|ZP_11688760.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
gi|357260283|gb|EHJ09729.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
Length = 442
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 131/213 (61%), Gaps = 7/213 (3%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI---EWAKAIGLSCRDLKSELHS 325
LL DEE EL Q++ ++ ++K LQ E + I EWAK IG+S R+L+ L
Sbjct: 20 LLKPDEEIELGKQVKRMMTCWEKKENLQV----EKSYITEEEWAKEIGISVRELQLILKR 75
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
G ++EK+I ANLRLVV V+K+YQG+G+ DL+ EG++GL+++VEKF+ G +F++YA
Sbjct: 76 GKRAKEKMIQANLRLVVAVSKKYQGKGLEFMDLVSEGNLGLIRAVEKFEYDKGYKFSTYA 135
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
Y W+RQ + +AI RTIR+P +I +SK+ + + Q+ S +L+ R+ I+
Sbjct: 136 YHWIRQALVRAICDKGRTIRVPVHINEEISKLKKVQLEIRQKYGRSATVRELSERLEISP 195
Query: 446 EKLERLIFITRMPLSMQQPVWADQDTTFQSTFL 478
EK+ L + LS+ Q V D++ + +FL
Sbjct: 196 EKIRVLRSVNNPMLSLDQKVLGDEENSTLLSFL 228
>gi|17231741|ref|NP_488289.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|8489803|gb|AAF75759.1|AF262218_1 group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|17133384|dbj|BAB75948.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
Length = 390
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 131/211 (62%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L + ++ LQ Q G+ PT + A + ++ + L++ L+ G
Sbjct: 92 LLKPDEEVELARRVRFLEEVRDLQADLQLQIGQHPTKAQVAGQLEITEKQLENRLYQGRV 151
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 152 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 211
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIRLP +I L+K+ +A+R Q+ + +P + ++A + I+V +L
Sbjct: 212 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEAEMAEALEISVPQL 271
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+L + R LS+ V ++DT D
Sbjct: 272 RQLQQLRRQALSLNHRVGKEEDTELMDLLED 302
>gi|359463990|ref|ZP_09252553.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 326
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 127/214 (59%), Gaps = 6/214 (2%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI---EWAKAIGLSCRDLKSELHS 325
LLT ++E Q+Q + L K +L+ PT I +WA+A+ L+ +L+ L
Sbjct: 29 LLTHEQEVLYGKQVQQMKMLLARKVELEE---INPTSISQADWAQAVELTESELEQALVQ 85
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
G ++ K+I ANLRLVV VAKQY R + L DL+QEGS+GL + V+KF P G RF++YA
Sbjct: 86 GQRAKNKMIQANLRLVVSVAKQYLRRNMELLDLIQEGSLGLERGVDKFDPSKGYRFSTYA 145
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
YWW+RQ + +AI Q SRTIRLP +I L+K+ + +R+ Q+ +LA ++ +
Sbjct: 146 YWWIRQAMTRAIAQQSRTIRLPVHIVEQLNKIKKHQRILAQQLGRQATPHELAVQLKMET 205
Query: 446 EKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
EK++R + ++R LS+ + QDT D
Sbjct: 206 EKVKRYLKLSRRTLSLDIRMGDQQDTALMDLLED 239
>gi|1769588|gb|AAB95226.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 137/242 (56%)
Query: 240 KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 299
K ++++ + G D +R +L LLT +EE Q+Q L+ L++++ L+
Sbjct: 3 KVNLQQAPNNGKSSADMVRTYLREIGRVPLLTHEEEIVYGKQVQRLMALQEKRQTLEESL 62
Query: 300 GREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
RE T EWA+A L+ + L+ +L G ++ K+I ANLRLVV +A+ + R + DL+
Sbjct: 63 DRERTREEWAEAAQLTPKQLQRDLQIGERAKRKMIEANLRLVVAIARNIKKRNLEFLDLI 122
Query: 360 QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLE 419
QEGS+GL + VEKF P G +F++YAYWW+RQ I +AI Q RTIRLP +I L+K+ +
Sbjct: 123 QEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKK 182
Query: 420 AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+R Q+ + ++A + + ++ ++R P+S+ V +QDT D
Sbjct: 183 TQRQLAQDLGRAATIAEIAEALELEPAQIREYFRVSRHPISLDVRVGDNQDTELMDLLED 242
Query: 480 AA 481
+
Sbjct: 243 SG 244
>gi|254421657|ref|ZP_05035375.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
gi|196189146|gb|EDX84110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
Length = 467
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 121/212 (57%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL EE EL Q++ ++ +E K R PT E A A G + L+ +L +
Sbjct: 169 LLQPTEEIELARQVRIIVEIEDYSEKASETLKRRPTHAELATAFGYTEGQLRQKLRQARA 228
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ ++I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYWW
Sbjct: 229 AKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 288
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I + I +RTIRLP +I L+K+ +A+R +E +P + ++A + +T E+L
Sbjct: 289 IRQGITRTIANDARTIRLPIHIVEKLNKLKKAQRELRKELQRTPTEVEVAAALEMTPEQL 348
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
L + R LS+ V +DT D
Sbjct: 349 RTLQQVQRKSLSLNHRVGKGEDTELMELLEDG 380
>gi|428306280|ref|YP_007143105.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
gi|428247815|gb|AFZ13595.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
Length = 422
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 122/214 (57%), Gaps = 22/214 (10%)
Query: 282 IQDLIRLEKEKSKLQSQFGR------------------EPTLI----EWAKAIGLSCRDL 319
+Q IRL + +L SQ G +PTL+ WA+ GL+ DL
Sbjct: 114 LQLYIRLIEAHDRLASQLGHRPSLERWAAEAHIALSELKPTLVAGKRSWAEVAGLTVPDL 173
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG+MGL ++VEKF P G
Sbjct: 174 EQIQKEGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTMGLERAVEKFDPTKGY 233
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLAR 439
RF++YAYWW+RQ I +AI SRTIRLP +I L+K+ + +R Q H+P E++A
Sbjct: 234 RFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKVQRQLSQTQGHTPTIEEIAA 293
Query: 440 RVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+ +T ++ ++ +S++ V ++DT
Sbjct: 294 ALEMTPPQVREVLLRVPRSVSLEIKVGKEKDTEL 327
>gi|115452175|ref|NP_001049688.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|29893614|gb|AAP06868.1| unknown protein [Oryza sativa Japonica Group]
gi|32351880|dbj|BAC78529.1| plastid sigma factor 2B [Oryza sativa Japonica Group]
gi|108707414|gb|ABF95209.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|113548159|dbj|BAF11602.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|215704451|dbj|BAG93885.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765869|dbj|BAG87566.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 540
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 136/234 (58%), Gaps = 4/234 (1%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
+S +KK +G PL F + R+LLTA +E E IQDL++LE + +L G
Sbjct: 214 SSARKKRLKGC--RSPLGCF-YKMTGRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNG 270
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EPT +WA+A G L+ L+ G S + ++ +N+RLV+ +A++++G G+ DL+Q
Sbjct: 271 GEPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 330
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 420
EG GL++ EKF G RF++Y++WW++Q IRK++ + ++ IRLP ++ S+V E
Sbjct: 331 EGIQGLVRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKEC 390
Query: 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 474
+R ++ P E++A G+ + ++E + + + +S+ V D T+Q
Sbjct: 391 RRRLRRQLKRLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGC-TDMTYQ 443
>gi|86607249|ref|YP_476012.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
gi|86555791|gb|ABD00749.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
Length = 361
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 119/192 (61%)
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
EE EL +IQ + +++ + + + Q+G++P+ E A A+ + L+S + G ++ KL
Sbjct: 69 EEIELSRKIQQKLLIDQARREWRQQWGQDPSDEELAAALQIPVSTLRSRIRQGEQAQRKL 128
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTI 393
INANLRLVV VAK+Y RG+ DL+QEG+MGL+++ EKF + G RF++YA+WW+RQ I
Sbjct: 129 INANLRLVVSVAKKYLNRGVPFLDLIQEGNMGLIRATEKFNAERGFRFSTYAHWWIRQGI 188
Query: 394 RKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453
+ I +RTIRLP ++ + + R ++ P + +LA +GI V+KL +
Sbjct: 189 TRCIANQARTIRLPVHMVDKVRLLKRTNRELMKARGRRPTEAELAEALGIKVKKLRMIQQ 248
Query: 454 ITRMPLSMQQPV 465
+PLS+ PV
Sbjct: 249 AAALPLSLDVPV 260
>gi|282895663|ref|ZP_06303788.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199357|gb|EFA74222.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 396
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 130/211 (61%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L ++ ++ L+ QFG T E A L+ + L++ L+ G
Sbjct: 98 LLKPDEEVELAHRVRFLEEVKDLQAALEEQFGHSATKGEIANKFDLNEKQLENRLYQGRV 157
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 158 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 217
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIRLP +I L+K+ +A+R Q+ +P + ++A + +TV++L
Sbjct: 218 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFARNPTEAEMAEFLEMTVQQL 277
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+L + R LS+ V ++DT D
Sbjct: 278 RQLQQLRRQALSLNHRVGKEEDTELMDLLED 308
>gi|288923254|ref|ZP_06417393.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288345398|gb|EFC79788.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 400
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 130/221 (58%), Gaps = 15/221 (6%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L +LLTA EE +L +I+ F E + + I
Sbjct: 101 SDPVRMYLKTIGRVRLLTAAEEVDLAKRIE------------AGLFASEK--LAATRKIS 146
Query: 314 LSCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
R DL++ G ++ KL+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL+++VEK
Sbjct: 147 PQLRQDLQAVEQDGQIAKRKLVEANLRLVVSIAKRYVGRGMLLLDLIQEGNLGLIRAVEK 206
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F G +F++YA WW+RQ + +A+ RTIR+P ++ ++KV +R +QE P
Sbjct: 207 FDYTKGYKFSTYATWWIRQAVTRALADQGRTIRIPVHMAETVNKVTRIQRQLLQELGREP 266
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
E++ ++ +T K+E ++ I + P++++ P+ A+QD+
Sbjct: 267 SPEEIGTQIDLTAHKVEEILKIAQTPVALETPIGAEQDSQL 307
>gi|443313785|ref|ZP_21043395.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442776198|gb|ELR86481.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 440
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 106/164 (64%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA+ GL+ L+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 180 WAEIAGLTVEQLEQIQTQGVRAKEHMIQANLRLVVSVAKKYQNRGLELLDLVQEGTLGLE 239
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 427
++VEKF P G RF++YAYWW+RQ I +AI SRTIRLP +I L+K+ + +R QE
Sbjct: 240 RAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKVQRKIAQE 299
Query: 428 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+P E++A + IT ++L ++ +S++ V D+DT
Sbjct: 300 KGRTPTIEEIAAELEITPKQLRDVLLRVPRSVSLETKVGKDKDT 343
>gi|340354650|ref|ZP_08677352.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
gi|339623173|gb|EGQ27678.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
Length = 389
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 128/222 (57%), Gaps = 17/222 (7%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G NDP+R++L LLT EE +L +IQ+ I E E ++ +
Sbjct: 90 GVRINDPVRMYLKEIGRVDLLTGKEEVDLAIRIQESIEAEAELAETNEMTPK-------- 141
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ + + G ++++KL ANLRLVV +AK+Y GRG+ DL+QEG+MGL+K+
Sbjct: 142 ---------IDAAIIRGENAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA 192
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+
Sbjct: 193 VEKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLG 252
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
P E++ + +T EK+ ++ I + P+S++ P+ + D+
Sbjct: 253 REPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDS 294
>gi|428214294|ref|YP_007087438.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria acuminata
PCC 6304]
gi|428002675|gb|AFY83518.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria acuminata
PCC 6304]
Length = 418
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 120/215 (55%), Gaps = 22/215 (10%)
Query: 281 QIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN------------- 327
++Q +RL + +L S G P+L WA G DLK L +G
Sbjct: 109 ELQRYVRLVDTRDRLASLLGHRPSLERWAAEAGEQVSDLKPILAAGKRQWAALASLTVEE 168
Query: 328 ---------SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 378
++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++V+KF P G
Sbjct: 169 LERTQAEGIGAKEHMIEANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVDKFDPTKG 228
Query: 379 CRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLA 438
RF++YAYWW+RQ I +AI SRTIRLP +I L+K+ +A+R QE + ED+A
Sbjct: 229 YRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTASIEDVA 288
Query: 439 RRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+ + +T ++ ++ +S++ V ++DT
Sbjct: 289 KELEMTPAQVREVLLRVPRSVSLETKVGKEKDTEL 323
>gi|125585746|gb|EAZ26410.1| hypothetical protein OsJ_10293 [Oryza sativa Japonica Group]
Length = 497
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 136/234 (58%), Gaps = 4/234 (1%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
+S +KK +G PL F + R+LLTA +E E IQDL++LE + +L G
Sbjct: 171 SSARKKRLKGC--RSPLGCF-YKMTGRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNG 227
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EPT +WA+A G L+ L+ G S + ++ +N+RLV+ +A++++G G+ DL+Q
Sbjct: 228 GEPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 287
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 420
EG GL++ EKF G RF++Y++WW++Q IRK++ + ++ IRLP ++ S+V E
Sbjct: 288 EGIQGLVRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKEC 347
Query: 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 474
+R ++ P E++A G+ + ++E + + + +S+ V D T+Q
Sbjct: 348 RRRLRRQLKRLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGC-TDMTYQ 400
>gi|86739990|ref|YP_480390.1| sigma 38 [Frankia sp. CcI3]
gi|86566852|gb|ABD10661.1| RNA polymerase, sigma 70 subunit, RpoD [Frankia sp. CcI3]
Length = 409
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 131/218 (60%), Gaps = 12/218 (5%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E + K
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFASEKLAVATKKTSP 156
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 157 QMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 216
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+ P
Sbjct: 217 DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPS 276
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E++A+ + +T +K+ ++ +++ P+S++ P+ ++D+
Sbjct: 277 PEEIAKEMDLTPDKVREILKVSQEPVSLETPIGEEEDS 314
>gi|75907421|ref|YP_321717.1| sigma 28 (flagella/sporulation) [Anabaena variabilis ATCC 29413]
gi|75701146|gb|ABA20822.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 378
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 130/211 (61%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L + ++ LQ Q G PT + A + ++ + L++ L+ G
Sbjct: 80 LLKPDEEVELARRVRFLEEVRDLQADLQLQLGLHPTKAQVAAQLEITEKQLENRLYQGRV 139
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 140 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 199
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIRLP +I L+K+ +A+R Q+ + +P + ++A + I+V +L
Sbjct: 200 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEAEMAEALEISVPQL 259
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+L + R LS+ V ++DT D
Sbjct: 260 RQLQQLRRQALSLNHRVGKEEDTELMDLLED 290
>gi|111221463|ref|YP_712257.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
gi|111148995|emb|CAJ60675.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
Length = 409
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 131/218 (60%), Gaps = 12/218 (5%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E + K
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFASEKLAVATKKTSP 156
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 157 QMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 216
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+ P
Sbjct: 217 DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPS 276
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E++A+ + +T +K+ ++ +++ P+S++ P+ ++D+
Sbjct: 277 PEEIAKEMDLTPDKVREILKVSQEPVSLETPIGEEEDS 314
>gi|158313963|ref|YP_001506471.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158109368|gb|ABW11565.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 409
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 131/218 (60%), Gaps = 12/218 (5%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E + K
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFASEKLAVATKKTSP 156
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 157 QMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 216
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+ P
Sbjct: 217 DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPS 276
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E++A+ + +T +K+ ++ +++ P+S++ P+ ++D+
Sbjct: 277 PEEIAKEMDLTPDKVREILKVSQEPVSLETPIGEEEDS 314
>gi|291526136|emb|CBK91723.1| RNA polymerase, sigma 70 subunit, RpoD [Eubacterium rectale DSM
17629]
gi|291527130|emb|CBK92716.1| RNA polymerase, sigma 70 subunit, RpoD [Eubacterium rectale M104/1]
Length = 418
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 137/223 (61%), Gaps = 2/223 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
EG DP+R++L LL+ADEE EL ++D ++ + L+ + + E
Sbjct: 103 EGVSVEDPVRMYLKEIGKVPLLSADEEIELAQNMEDGAVATEKINVLKGRI--DGASEEE 160
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
I + L+ ++ G ++++L ANLRLVV +AK+Y GRG+ DL+QEG++GL+K
Sbjct: 161 KAEIKEEIKTLQRDVDKGADAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIK 220
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE
Sbjct: 221 AVEKFDYKKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEL 280
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
P E++A+ + + VE++ ++ I++ P+S++ P+ ++D+
Sbjct: 281 GREPSPEEIAKEMNMPVERVREILKISQEPVSLETPIGEEEDS 323
>gi|254445278|ref|ZP_05058754.1| Sigma-70 region 3 family [Verrucomicrobiae bacterium DG1235]
gi|198259586|gb|EDY83894.1| Sigma-70 region 3 family [Verrucomicrobiae bacterium DG1235]
Length = 576
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 109/156 (69%)
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+++ L + + ++ +++ ANLRLV+ +AK+Y RG+S DL+QEG+MGLMK+VEKF+ +
Sbjct: 305 EVRRHLKAAHKAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRR 364
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G +F++YA WW+RQ I ++I +RTIR+P ++ L+KV++ ++ +QE H P E++
Sbjct: 365 GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLLQEYGHEPTPEEV 424
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
A + + VE+++ ++ + + P+S+Q PV DT F
Sbjct: 425 AEEMALPVERVQTIMKMAQQPISLQSPVGDGDDTNF 460
>gi|392944009|ref|ZP_10309651.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
gi|392287303|gb|EIV93327.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
Length = 392
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 131/218 (60%), Gaps = 12/218 (5%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E + K
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFASEKLAVATKKTSP 139
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 140 QMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 199
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+ P
Sbjct: 200 DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPS 259
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E++A+ + +T +K+ ++ +++ P+S++ P+ ++D+
Sbjct: 260 PEEIAKEMDLTPDKVREILKVSQEPVSLETPIGEEEDS 297
>gi|238924709|ref|YP_002938225.1| RNA polymerase sigma factor RpoD [Eubacterium rectale ATCC 33656]
gi|238876384|gb|ACR76091.1| RNA polymerase sigma factor RpoD [Eubacterium rectale ATCC 33656]
Length = 434
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 137/223 (61%), Gaps = 2/223 (0%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
EG DP+R++L LL+ADEE EL ++D ++ + L+ + + E
Sbjct: 119 EGVSVEDPVRMYLKEIGKVPLLSADEEIELAQNMEDGAVATEKINVLKGRI--DGASEEE 176
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
I + L+ ++ G ++++L ANLRLVV +AK+Y GRG+ DL+QEG++GL+K
Sbjct: 177 KAEIKEEIKTLQRDVDKGADAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIK 236
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE
Sbjct: 237 AVEKFDYKKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEL 296
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
P E++A+ + + VE++ ++ I++ P+S++ P+ ++D+
Sbjct: 297 GREPSPEEIAKEMNMPVERVREILKISQEPVSLETPIGEEEDS 339
>gi|358068528|ref|ZP_09154990.1| hypothetical protein HMPREF9333_01871 [Johnsonella ignava ATCC
51276]
gi|356693345|gb|EHI55024.1| hypothetical protein HMPREF9333_01871 [Johnsonella ignava ATCC
51276]
Length = 349
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 108/152 (71%)
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
S+R+KL+ ANLRLVV +A++Y RG+ L DL+QEG++GLM++V+KF G RF++YA W
Sbjct: 112 SARKKLVEANLRLVVSIARKYTNRGLHLLDLIQEGNLGLMRAVDKFDVSKGFRFSTYATW 171
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQ I +AI + SRTIR+P ++ +++K++ K+ ++ + N P E+LA +GI++EK
Sbjct: 172 WIRQAISRAISEQSRTIRIPVHMVEVMNKLVNEKKRFLIQHNREPLAEELAEIMGISIEK 231
Query: 448 LERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+ +I +T+ +S++ P+ D+D+ + D
Sbjct: 232 VNEVIKLTQDTISIETPINGDEDSYLRDFISD 263
>gi|302670285|ref|YP_003830245.1| RNA polymerase sigma factor RpoD [Butyrivibrio proteoclasticus
B316]
gi|302394758|gb|ADL33663.1| RNA polymerase sigma factor RpoD [Butyrivibrio proteoclasticus
B316]
Length = 521
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 135/223 (60%), Gaps = 10/223 (4%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G DP+R++L LLTAD+E +L ++ EKE + + +
Sbjct: 214 DGISIEDPVRMYLKEIGKVPLLTADQEIDLAQAMEAGADAEKELADDK----------DV 263
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
K ++L + ++ G ++++L ANLRLVV +AK+Y GRG+ DL+QEG++GL+K
Sbjct: 264 NKLSDARKKELNAIIYEGEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIK 323
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE
Sbjct: 324 AVEKFDFRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEL 383
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
P E++A+ + + VE++ ++ I++ P+S++ P+ ++D+
Sbjct: 384 GREPLPEEVAKEMNMPVERVREILKISQEPVSLETPIGEEEDS 426
>gi|309790481|ref|ZP_07685041.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG-6]
gi|308227468|gb|EFO81136.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG6]
Length = 346
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 125/205 (60%), Gaps = 13/205 (6%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLTA+EE EL +I+ R ++ + +L ++ + G R+L+ E+ GN
Sbjct: 62 LLTANEEVELSERIE---RGDEAEERLATE----------DQLSGTQRRNLEHEVERGND 108
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+R LI ANLRLVV +AK+Y GRG+SL DL+QEG++GLM++VEKF + G RF++YA WW
Sbjct: 109 ARRHLIQANLRLVVSIAKKYVGRGLSLLDLIQEGNIGLMRAVEKFDHRKGNRFSTYATWW 168
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ + ++I + RTIRLP ++ +S+V Q P E++A +G E++
Sbjct: 169 IRQAVTRSIAEQGRTIRLPVHMSESVSQVKRTSERLSQSLERQPSAEEIAIALGQPTERI 228
Query: 449 ERLIFITRMPLSMQQPVWADQDTTF 473
ER++ R P+S++ PV + + T
Sbjct: 229 ERVLEAARRPVSLETPVGDEGEHTL 253
>gi|288916958|ref|ZP_06411330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288351667|gb|EFC85872.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 392
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 131/218 (60%), Gaps = 12/218 (5%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E + K
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFASEKLAVATKKTSP 139
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 140 QMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 199
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+ P
Sbjct: 200 DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPS 259
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E++A+ + +T +K+ ++ +++ P+S++ P+ ++D+
Sbjct: 260 PEEIAKEMDLTPDKVREILKVSQEPVSLETPIGEEEDS 297
>gi|332708973|ref|ZP_08428943.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352162|gb|EGJ31732.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651120|gb|AEE81161.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 117/177 (66%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE +L +++ L+ ++ + LQ + R+PT E A A+ ++ R L+ L+ G
Sbjct: 75 LLKPDEEVDLARRVKFLVEIDHLHNSLQEKLDRKPTKAEVAAAVEMTERQLEGNLYRGRV 134
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYWW
Sbjct: 135 AKRKMIRSNLRLVVSIAKRYINRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 194
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
+RQ I + I +RTIRLP +I L+K+ +A+R Q+ +P++ +LA+ + I++
Sbjct: 195 IRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRELKQKLQRNPNELELAQALEISL 251
>gi|414591842|tpg|DAA42413.1| TPA: sigma factor SIG2B [Zea mays]
gi|414866057|tpg|DAA44614.1| TPA: sigma factor SIG2B [Zea mays]
gi|414872289|tpg|DAA50846.1| TPA: sigma factor SIG2B [Zea mays]
Length = 528
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 126/219 (57%), Gaps = 4/219 (1%)
Query: 263 GPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 322
GP +LLTA++E E IQDL++LE + ++ EPT +WA A G L+
Sbjct: 224 GP---RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRR 280
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L+ G + +++ +N+RLV+ +AK+++G G+ DL+Q+G GL++ EKF G RF+
Sbjct: 281 LNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQDGMQGLIRGAEKFDASKGFRFS 340
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG 442
+Y++WW++Q IRK++ + ++ IRLP ++ S+V E R +E P E++A G
Sbjct: 341 TYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECCRRLGRELKRLPSNEEIAVDTG 400
Query: 443 ITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+T+ ++E + + + +S V D T+Q D +
Sbjct: 401 MTIRRVEAAMSLPKYSVSFTSKVGCT-DVTYQEIMPDTS 438
>gi|116074180|ref|ZP_01471442.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
gi|116069485|gb|EAU75237.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
Length = 364
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 139/271 (51%), Gaps = 46/271 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQ--------------------IQDLIRLEKEKS 293
ND LRL+L LLT +EE L Q IQ L+ LE+ +
Sbjct: 7 NDLLRLYLQDIGRVDLLTNEEEVLLARQVQQREVLLAEERALAGEHPTIQRLLELEQLQQ 66
Query: 294 KLQSQFGREPTLIEWAKAIGLS----------------------CRDLKSELHSGNSSRE 331
+ + PT EWA+A GL+ ++L+ L G +R+
Sbjct: 67 REANHVCHWPTKKEWAEAAGLTQEQLTTVLREGYGIWSDHSALESKELQKRLREGRRARD 126
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+RQ
Sbjct: 127 RMIQANLRLVVTVAKKYQQRGLELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQ 186
Query: 392 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451
I +AI SRTIRLP ++ L+++ + ++ DL+R +GI+ E +
Sbjct: 187 GITRAIATQSRTIRLPVHVTEKLNRIKKVQQEIATNEGRIASISDLSRALGISEETVR-- 244
Query: 452 IFITRMP--LSMQQPVWADQDTTFQSTFLDA 480
+ + R+P +S++ V DQDT D
Sbjct: 245 LTLMRVPRSVSLETRVGKDQDTQLGDLLEDC 275
>gi|162458864|ref|NP_001104924.1| sigma-like factor2B [Zea mays]
gi|4336608|gb|AAD17855.1| sigma factor SIG2B [Zea mays]
Length = 527
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 125/217 (57%), Gaps = 4/217 (1%)
Query: 263 GPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 322
GP +LLTA++E E IQDL++LE + ++ EPT +WA A G L+
Sbjct: 223 GP---RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRR 279
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L+ G + +++ +N+RLV+ +AK+++G G+ DL+Q+G GL++ EKF G RF+
Sbjct: 280 LNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQDGMQGLIRGAEKFDASKGFRFS 339
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG 442
+Y++WW++Q IRK++ + ++ IRLP ++ S+V E R +E P E++A G
Sbjct: 340 TYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECCRRLGRELKRLPSNEEIAVDTG 399
Query: 443 ITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+T+ ++E + + + +S V D T+Q D
Sbjct: 400 MTIRRVEAAMSLPKYSVSFTSKVGCT-DVTYQEIMPD 435
>gi|298492420|ref|YP_003722597.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298234338|gb|ADI65474.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 389
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 132/211 (62%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L ++ ++ L+ + G++P+ E A ++ + L+S L+ G
Sbjct: 91 LLKPDEEVELARRVRFLEEVKDLQAALEEELGQQPSRSEVAAKFEMTEKQLESRLYQGRV 150
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 210
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIRLP +I L+K+ +A+R Q+ +P + ++A + I++++L
Sbjct: 211 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPSEAEMATALEISIQQL 270
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+L + R LS+ V ++DT D
Sbjct: 271 RQLQQLRRQALSLNHRVGKEEDTELMDLLED 301
>gi|317968274|ref|ZP_07969664.1| putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. CB0205]
Length = 382
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 111/175 (63%), Gaps = 4/175 (2%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA LS +LK LH G +R+++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 115 WATLSELSIAELKQALHQGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLE 174
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 427
++VEK+ P G RF++YAYWW+RQ I +AI SRTIRLP ++ L+++ +A+R E
Sbjct: 175 RAVEKYDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNRIKKAQRQIASE 234
Query: 428 GNHSPDKEDLARRVGITVEKLERLIFITRMP--LSMQQPVWADQDTTFQSTFLDA 480
DLA+ +G++ E++ RL + R+P +S+ V DQDT D
Sbjct: 235 HGRLASVADLAKELGLS-EEVIRLTLM-RVPRSVSLDTRVGRDQDTELGDLLEDG 287
>gi|373850334|ref|ZP_09593135.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Opitutaceae
bacterium TAV5]
gi|372476499|gb|EHP36508.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Opitutaceae
bacterium TAV5]
Length = 595
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 108/158 (68%)
Query: 316 CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
R + + ++ +++ ANLRLV+ +AK+Y RG+S DL+QEG+MGLMK+VEKF+
Sbjct: 317 VRKTNVHIREAHQAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEY 376
Query: 376 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKE 435
+ G +F++YA WW+RQ I ++I +RTIR+P ++ L+KV++ ++ +QE H P E
Sbjct: 377 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLLQEFGHEPTPE 436
Query: 436 DLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
++A + + VE++++++ + + P+S+Q PV DT+F
Sbjct: 437 EVADEMNLPVERVQQIMKMAQQPISLQSPVGDGDDTSF 474
>gi|391228423|ref|ZP_10264629.1| RNA polymerase sigma factor, sigma-70 family [Opitutaceae bacterium
TAV1]
gi|391218084|gb|EIP96504.1| RNA polymerase sigma factor, sigma-70 family [Opitutaceae bacterium
TAV1]
Length = 595
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 108/158 (68%)
Query: 316 CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
R + + ++ +++ ANLRLV+ +AK+Y RG+S DL+QEG+MGLMK+VEKF+
Sbjct: 317 VRKTNVHIREAHQAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEY 376
Query: 376 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKE 435
+ G +F++YA WW+RQ I ++I +RTIR+P ++ L+KV++ ++ +QE H P E
Sbjct: 377 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLLQEFGHEPTPE 436
Query: 436 DLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
++A + + VE++++++ + + P+S+Q PV DT+F
Sbjct: 437 EVADEMNLPVERVQQIMKMAQQPISLQSPVGDGDDTSF 474
>gi|307721137|ref|YP_003892277.1| RNA polymerase sigma-70 subunit RpoD [Sulfurimonas autotrophica DSM
16294]
gi|306979230|gb|ADN09265.1| RNA polymerase, sigma 70 subunit, RpoD [Sulfurimonas autotrophica
DSM 16294]
Length = 615
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 104/145 (71%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
S+ K+ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G +F++YA WW
Sbjct: 376 SKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWW 435
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIR+P ++ ++++ + R ++QE PD + +A+ VG++VEK+
Sbjct: 436 IRQAISRAIADQARTIRIPIHMIETINRINKIMRKHLQENGKEPDVDTIAKEVGLSVEKV 495
Query: 449 ERLIFITRMPLSMQQPVWADQDTTF 473
+ +I IT+ P+S++ P+ ++ D F
Sbjct: 496 KNVIKITKEPISLEAPIGSEDDGRF 520
>gi|158334481|ref|YP_001515653.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158304722|gb|ABW26339.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 119/203 (58%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ++E Q+Q +I L++ K +L Q REP L EWA + L+ EL G +
Sbjct: 23 LLNHEQEIIFGKQVQRMIMLQELKQQLHEQLEREPNLSEWADQADIPVSQLQKELKLGQT 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+ K++ +NLRLVV +AK+Y + DL+QEG++GL + VEKF P G RF++YAYWW
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKLEFLDLIQEGTIGLQRGVEKFDPTKGYRFSTYAYWW 142
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ + +AI + RTIRLP +I L+K+ + KR + + P +LA + ++ +K+
Sbjct: 143 IRQAMTRAIAEQERTIRLPIHINEKLNKLRKVKRQLSLKLHRDPTVAELATEMELSPKKV 202
Query: 449 ERLIFITRMPLSMQQPVWADQDT 471
E + R +S+ V Q+T
Sbjct: 203 EAFLSYARHSISLDVQVGDQQNT 225
>gi|108707415|gb|ABF95210.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|215695353|dbj|BAG90544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 343
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 136/234 (58%), Gaps = 4/234 (1%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
+S +KK +G PL F + R+LLTA +E E IQDL++LE + +L G
Sbjct: 17 SSARKKRLKGC--RSPLGCF-YKMTGRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNG 73
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EPT +WA+A G L+ L+ G S + ++ +N+RLV+ +A++++G G+ DL+Q
Sbjct: 74 GEPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 133
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 420
EG GL++ EKF G RF++Y++WW++Q IRK++ + ++ IRLP ++ S+V E
Sbjct: 134 EGIQGLVRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKEC 193
Query: 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 474
+R ++ P E++A G+ + ++E + + + +S+ V D T+Q
Sbjct: 194 RRRLRRQLKRLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT-DMTYQ 246
>gi|434404640|ref|YP_007147525.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428258895|gb|AFZ24845.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 377
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 132/211 (62%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L ++ + L ++ G+ + ++ A + ++ + L+S L+ G
Sbjct: 79 LLKPDEEVELARRVRFLEEIKDLQESLSTELGQPASKLQVANQLEMTEKQLESRLYQGRV 138
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 198
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIRLP +I L+K+ +A+R Q+ + +P + ++A + ITV++L
Sbjct: 199 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLSRNPSEAEMAEALEITVQQL 258
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+L + R LS+ V ++DT D
Sbjct: 259 RQLQQLRRQALSLNHRVGKEEDTELMDLLED 289
>gi|159901184|ref|YP_001547431.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159894223|gb|ABX07303.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 375
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 132/237 (55%), Gaps = 34/237 (14%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQD----LIRLEK------EKSKLQ 296
+ EG +DP+R++L LLTA EE L Q++ +IRL + EK++LQ
Sbjct: 69 IREGVSLDDPVRMYLREIGQVHLLTAHEETMLAKQLERGERAMIRLARHEYLLEEKARLQ 128
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
Q L+SE ++R+ LI ANLRLVV +AK+Y GRG+S
Sbjct: 129 QQV-------------------LESE-----AARQHLIQANLRLVVSIAKKYVGRGMSFL 164
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSK 416
DL+QEG++GLM++ EKF G +F++YA WW+RQ I ++I HSRTIRLP ++ +++
Sbjct: 165 DLIQEGNIGLMRATEKFDYHKGFKFSTYATWWIRQAITRSISDHSRTIRLPVHVGETINR 224
Query: 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
V Q P E++ +G+ +K+ R++ + R P+S++ PV + D+
Sbjct: 225 VKRTAHKLQQALEREPSAEEIGEALGLPADKVRRVLEVARQPVSLETPVGNEGDSVL 281
>gi|417001145|ref|ZP_11941059.1| RNA polymerase sigma factor RpoD [Veillonella parvula
ACS-068-V-Sch12]
gi|333975628|gb|EGL76507.1| RNA polymerase sigma factor RpoD [Veillonella parvula
ACS-068-V-Sch12]
Length = 386
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 138/238 (57%), Gaps = 28/238 (11%)
Query: 234 ETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
E + +K S+ + G + +DP+R++L LL+ADEE L QI+ S
Sbjct: 83 EVSSEKKISIDLSVDSGVNIDDPVRMYLKEIGRVPLLSADEEIVLAKQIE-------AGS 135
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
+ + + K I LS + +++KL++ANLRLVV +AK+Y GRG+
Sbjct: 136 QEDATY----------KDIQLSKK-----------AKKKLVDANLRLVVSIAKRYVGRGM 174
Query: 354 SLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTL 413
DL+QEG++GL+K+V+KF G +F++YA WW+RQ I +AI +RTIR+P ++
Sbjct: 175 LFLDLIQEGNLGLIKAVDKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVET 234
Query: 414 LSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
++K++ R +Q+ P E++A +GITVE++ + I + P+S++ P+ ++D+
Sbjct: 235 INKLIRISRQLLQDKGREPLPEEIAEGMGITVERVREIQKIAQEPVSLETPIGEEEDS 292
>gi|269956779|ref|YP_003326568.1| RpoD subfamily RNA polymerase sigma-70 subunit [Xylanimonas
cellulosilytica DSM 15894]
gi|269305460|gb|ACZ31010.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Xylanimonas
cellulosilytica DSM 15894]
Length = 549
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 133/226 (58%), Gaps = 4/226 (1%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP++ +L LL A++E EL +I+ + E++ SK + F R + + +
Sbjct: 242 DPVKDYLKQIGKVALLNAEQEVELAKRIEAGLFAEEKLSKDFADFDRTKADADTRRLV-- 299
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDL+ H G ++ L+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 300 --RDLQWIAHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFD 357
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
G +F++YA WW+RQ I +A+ +RTIR+P ++ +++K+ +R +Q+ P
Sbjct: 358 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTP 417
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E+LA+ + +T EK+ + R P+S+ P+ D D+ F D+
Sbjct: 418 EELAKELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDS 463
>gi|182416400|ref|YP_001821466.1| RpoD family RNA polymerase sigma factor [Opitutus terrae PB90-1]
gi|177843614|gb|ACB77866.1| RNA polymerase, sigma 70 subunit, RpoD family [Opitutus terrae
PB90-1]
Length = 640
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 107/151 (70%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
+ + ++ +++ ANLRLV+ +AK+Y RG+S DL+QEG+MGLMK+VEKF+ + G +F+
Sbjct: 331 VREAHQAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFS 390
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG 442
+YA WW+RQ I ++I +RTIR+P ++ L+KV++ ++ +QE H P E++A +
Sbjct: 391 TYATWWIRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLLQEYGHEPTPEEVADEMN 450
Query: 443 ITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+ VE++++++ + + P+S+Q PV DT+F
Sbjct: 451 LPVERVQQIMKMAQQPISLQSPVGDGDDTSF 481
>gi|294055048|ref|YP_003548706.1| RpoD subfamily RNA polymerase sigma-70 subunit [Coraliomargarita
akajimensis DSM 45221]
gi|293614381|gb|ADE54536.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Coraliomargarita
akajimensis DSM 45221]
Length = 639
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 112/167 (67%), Gaps = 1/167 (0%)
Query: 316 CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
R+++ + ++ +++ ANLRLV+ +AK+Y RG+S DL+QEG+MGLMK+VEKF+
Sbjct: 368 IREVRIGTREAHKAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEY 427
Query: 376 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKE 435
+ G +F++YA WW+RQ I ++I +RTIR+P ++ L+KV++ ++ +QE H P E
Sbjct: 428 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLLQELGHEPTAE 487
Query: 436 DLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++A + + +E+++ ++ + + P+S+Q PV DT F F++ G
Sbjct: 488 EVADEMNLPIERVQSIMKMAQQPISLQSPVGDSDDTNF-GDFIEDKG 533
>gi|1769598|gb|AAB39998.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 398
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 110/166 (66%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA+ +GLS ++L S L +G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 138 WAEQVGLSVKELDSILKAGAKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 197
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 427
++V+KF P G RF++YAYWW+RQ I + SRTIRLP ++ L+K+ +A+R Q
Sbjct: 198 RAVDKFDPTKGYRFSTYAYWWIRQGITRGDRTQSRTIRLPVHVTEKLNKIKKAQRQISQT 257
Query: 428 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+P +D+A+ + +T E++ ++ +S++ V D+DT
Sbjct: 258 QGCTPSLDDVAQALEMTPEQVREVLQKVPRSVSLEIRVGKDRDTEL 303
>gi|323388685|gb|ADX60147.1| SIGMA70-like transcription factor [Zea mays]
Length = 428
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 126/219 (57%), Gaps = 4/219 (1%)
Query: 263 GPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 322
GP +LLTA++E E IQDL++LE + ++ EPT +WA A G L+
Sbjct: 124 GP---RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRR 180
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L+ G + +++ +N+RLV+ +AK+++G G+ DL+Q+G GL++ EKF G RF+
Sbjct: 181 LNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQDGMQGLIRGAEKFDASKGFRFS 240
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG 442
+Y++WW++Q IRK++ + ++ IRLP ++ S+V E R +E P E++A G
Sbjct: 241 TYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECCRRLGRELKRLPSNEEIAVDTG 300
Query: 443 ITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+T+ ++E + + + +S V D T+Q D +
Sbjct: 301 MTIRRVEAAMSLPKYSVSFTSKVGCT-DVTYQEIMPDTS 338
>gi|427722866|ref|YP_007070143.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7376]
gi|427354586|gb|AFY37309.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7376]
Length = 396
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 109/166 (65%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA + L +++++ L +G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 136 WAACVDLDIKEIEAVLKAGAKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 195
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 427
++V+KF P G RF++YAYWW+RQ I +AI SRTIRLP ++ L+K+ +A+R Q
Sbjct: 196 RAVDKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNKIKKAQRQISQT 255
Query: 428 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+P ED+A+ + +T ++ ++ +S++ V D+DT
Sbjct: 256 QGCTPSLEDVAKVLNMTAAQVREVLQKVPRSVSLEIRVGQDRDTEL 301
>gi|384172595|ref|YP_005553972.1| RNA polymerase sigma factor RpoD [Arcobacter sp. L]
gi|345472205|dbj|BAK73655.1| RNA polymerase sigma factor RpoD [Arcobacter sp. L]
Length = 628
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 112/162 (69%), Gaps = 4/162 (2%)
Query: 316 CRDLKSELHSG----NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
RD+ ++ G ++S+ ++ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+
Sbjct: 372 LRDVLEQIKRGKQITDTSKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVD 431
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHS 431
KF+ + G +F++YA WW+RQ I +AI +RTIR+P ++ ++++ + R IQE
Sbjct: 432 KFEYKKGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRINKIIRKGIQENGKE 491
Query: 432 PDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
PD +++A+ VG+ V+K++++I IT+ P+S++ P+ +D D F
Sbjct: 492 PDVDEIAKEVGLPVDKVKQVIKITKEPVSLEAPIGSDDDGKF 533
>gi|427738916|ref|YP_007058460.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427373957|gb|AFY57913.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 378
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 126/211 (59%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L + + ++ Q + G P AK +G+ + L+ L+ G
Sbjct: 80 LLKPDEEVELARRVRILEEVRQAQAAAQEKLGYFPDKAAIAKEMGIVQKQLEHRLYQGKV 139
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 140 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 199
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIRLP +I L+K+ +A+R Q+ +P +E+LA + I +L
Sbjct: 200 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPTEEELAEVLDIPANQL 259
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+L + R LS+ V ++DT D
Sbjct: 260 RQLQQLRRQALSLNHRVGKEEDTELMDLLED 290
>gi|119509984|ref|ZP_01629125.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119512944|ref|ZP_01632006.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119462397|gb|EAW43372.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119465308|gb|EAW46204.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
Length = 389
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 133/211 (63%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L + + ++ L+ + G+ T ++ A + ++ + L+S L+ G
Sbjct: 91 LLKPDEEVELARRVRFLEEVREVQAALELELGQPTTKVQVAGQLEMTEKQLESRLYQGRV 150
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 210
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIRLP +I L+K+ +A+R Q+ +P++ ++A + I+V++L
Sbjct: 211 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLCRNPNEAEMAEALEISVQQL 270
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+L + R LS+ V ++DT D
Sbjct: 271 RQLQQLRRQALSLNHRVGKEEDTELMDLLED 301
>gi|422303174|ref|ZP_16390528.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
gi|389791889|emb|CCI12331.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
Length = 435
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 123/214 (57%), Gaps = 22/214 (10%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------- 328
AQ+Q ++L + +L ++ P+L WAK +S +LK+ L +G
Sbjct: 125 AQVQQFVKLIAVRDQLTARLAHRPSLERWAKTAQISVSELKNALKAGKQHWAHLAGLEVG 184
Query: 329 -----------SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
++E++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P
Sbjct: 185 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTK 244
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G RF++YAYWW+RQ + +AI SR IRLP +I L+K+ +A+R Q + E++
Sbjct: 245 GYRFSTYAYWWIRQGMTRAIATQSRMIRLPVHITEKLNKIKKAQRKISQMRGRTATVEEI 304
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
A+ + +T E + ++ +S++ V ++DT
Sbjct: 305 AQELALTPEAVREVLMTVPRSVSLEIKVGKEKDT 338
>gi|113474981|ref|YP_721042.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110166029|gb|ABG50569.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 496
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 5/222 (2%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D ++L+ + L +EE L QI L+ LEK KL+ + R P IEWA +
Sbjct: 187 DSIQLYYKQVNSFARLHPEEEIHLAHQIDGLLALEKIYEKLEEKLNRSPNEIEWATEAKM 246
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L L G ++ +++ ANLRLV VAK+YQ RG+ DL+QEG +GL+++ EKF
Sbjct: 247 SKWELCDRLEQGRRAKNQMVTANLRLVTSVAKRYQNRGLDFQDLIQEGVIGLLRATEKFD 306
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLE-AKRLYIQEGNHSP- 432
G +F++Y WW+RQ I +AI +SR +RLP +Y +S++ + K++ I+ SP
Sbjct: 307 HTKGYKFSTYGIWWIRQAITRAICDYSRIVRLPVYLYETISQIKKIVKQISIE---CSPL 363
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 474
E++A R+ +T EKL+ +I + LS+ P+ ++ ++
Sbjct: 364 TAEEVATRMEMTTEKLQFIIECAQETLSLDYPINKGENIIYK 405
>gi|157737257|ref|YP_001489940.1| RNA polymerase sigma factor RpoD [Arcobacter butzleri RM4018]
gi|384155669|ref|YP_005538484.1| RNA polymerase sigma factor RpoD [Arcobacter butzleri ED-1]
gi|157699111|gb|ABV67271.1| RNA polymerase sigma 70 factor [Arcobacter butzleri RM4018]
gi|345469223|dbj|BAK70674.1| RNA polymerase sigma factor RpoD [Arcobacter butzleri ED-1]
Length = 626
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 107/147 (72%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
++S+ ++ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 385 DTSKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYAT 444
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW+RQ I +AI +RTIR+P ++ ++++ + R +QE PD E++A+ VG+ V+
Sbjct: 445 WWIRQAISRAIADQARTIRIPIHMIETINRINKIIRKGVQENGKEPDIEEIAKEVGLPVD 504
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++++I IT+ P+S++ P+ +D+D F
Sbjct: 505 KVKQVIKITKEPVSLEAPIGSDEDGKF 531
>gi|269798255|ref|YP_003312155.1| RpoD subfamily RNA polymerase sigma-70 subunit [Veillonella parvula
DSM 2008]
gi|282850493|ref|ZP_06259872.1| RNA polymerase sigma factor RpoD [Veillonella parvula ATCC 17745]
gi|294792116|ref|ZP_06757264.1| RNA polymerase sigma factor RpoD [Veillonella sp. 6_1_27]
gi|294793987|ref|ZP_06759124.1| RNA polymerase sigma factor RpoD [Veillonella sp. 3_1_44]
gi|269094884|gb|ACZ24875.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Veillonella
parvula DSM 2008]
gi|282579986|gb|EFB85390.1| RNA polymerase sigma factor RpoD [Veillonella parvula ATCC 17745]
gi|294455557|gb|EFG23929.1| RNA polymerase sigma factor RpoD [Veillonella sp. 3_1_44]
gi|294457346|gb|EFG25708.1| RNA polymerase sigma factor RpoD [Veillonella sp. 6_1_27]
Length = 386
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 132/238 (55%), Gaps = 28/238 (11%)
Query: 234 ETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
E + +K S+ + G + +DP+R++L LL+ADEE L QI+
Sbjct: 83 EVSSEKKISIDLSVDSGVNIDDPVRMYLKEIGRVPLLSADEEIVLAKQIE---------- 132
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
G ++ +++KL++ANLRLVV +AK+Y GRG+
Sbjct: 133 ------------------AGAQEDATYKDIQLSKKAKKKLVDANLRLVVSIAKRYVGRGM 174
Query: 354 SLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTL 413
DL+QEG++GL+K+V+KF G +F++YA WW+RQ I +AI +RTIR+P ++
Sbjct: 175 LFLDLIQEGNLGLIKAVDKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVET 234
Query: 414 LSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
++K++ R +Q+ P E++A +GITVE++ + I + P+S++ P+ ++D+
Sbjct: 235 INKLIRISRQLLQDKGREPLPEEIAEGMGITVERVREIQKIAQEPVSLETPIGEEEDS 292
>gi|315636974|ref|ZP_07892198.1| DNA-directed RNA polymerase sigma subunit RpoD [Arcobacter butzleri
JV22]
gi|315478804|gb|EFU69513.1| DNA-directed RNA polymerase sigma subunit RpoD [Arcobacter butzleri
JV22]
Length = 626
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 107/147 (72%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
++S+ ++ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 385 DTSKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYAT 444
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW+RQ I +AI +RTIR+P ++ ++++ + R +QE PD E++A+ VG+ V+
Sbjct: 445 WWIRQAISRAIADQARTIRIPIHMIETINRINKIIRKGVQENGKEPDIEEIAKEVGLPVD 504
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++++I IT+ P+S++ P+ +D+D F
Sbjct: 505 KVKQVIKITKEPVSLEAPIGSDEDGKF 531
>gi|37520903|ref|NP_924280.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35211898|dbj|BAC89275.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 350
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 133/220 (60%), Gaps = 5/220 (2%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +RL+L LL EE EL +I + LE+++SK Q+ W ++
Sbjct: 39 DDLVRLYLQEIGRVALLKPAEEIELARRIATWLSLEEKRSKFQAVAAES-----WLESAN 93
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L+ + + + G ++ L+ ANLRLVV VAK+YQGRG+ L DL+QEG++GL+++ EKF
Sbjct: 94 LTPQQWSTIVREGERAKAHLVKANLRLVVSVAKKYQGRGLHLLDLIQEGTLGLIRAAEKF 153
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I +AI +RTIRLP +I ++++ +A R Q+ SP
Sbjct: 154 DYTRGFKFSTYATWWIRQGITRAIAMQARTIRLPVHIVEKVNRIKKATRQLSQQLGRSPS 213
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
++++A+ V + ++L + ++P+S++ PV ++DT
Sbjct: 214 EDEIAQAVEMDADQLRFVRKAIQLPVSLETPVGREEDTAL 253
>gi|443323548|ref|ZP_21052553.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442786728|gb|ELR96456.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 381
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 140/263 (53%), Gaps = 47/263 (17%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------- 294
D +RL+L LL+ +EE L +IQ ++L + +++
Sbjct: 27 TDLVRLYLQDIGKIPLLSKEEEVVLAQKIQRYLQLLELRAQACQQLDPVMAEFARLITVH 86
Query: 295 --LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
L +Q G P+L WAK L +LK L +G ++
Sbjct: 87 DHLAAQLGHRPSLKTWAKTGNLEITELKQILTTGKLCWAQIAKLELKELEMIQKAGIEAK 146
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
L+ ANLRLVV +AK+YQ RG+ L DL+QEG++GL K+V+KF P G RF++YAYWW+R
Sbjct: 147 NTLLAANLRLVVSIAKKYQNRGLELLDLIQEGTLGLEKAVDKFDPTKGYRFSTYAYWWIR 206
Query: 391 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450
Q I +AI S TIR+P +I L+K+ +A+R Q+ ++P ED+A +G T +++
Sbjct: 207 QGITRAIATQSHTIRIPVHITEKLNKIKKAQRKISQQKGYTPTLEDIATELGTTAKQIRE 266
Query: 451 LIFITRMP--LSMQQPVWADQDT 471
++ R+P +S++ + D+DT
Sbjct: 267 ILV--RIPRSVSLESKIGKDKDT 287
>gi|443329181|ref|ZP_21057769.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442791126|gb|ELS00625.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 417
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 105/166 (63%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA+ G +L+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 157 WAQVTGCEVNELEKIQKDGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 216
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 427
++VEKF P G RF++YAYWW+RQ I +AI SRTIRLP +I L+K+ +A+R QE
Sbjct: 217 RAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQE 276
Query: 428 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+P EDL+ + +T ++ ++ +S++ V ++DT
Sbjct: 277 KGRTPCIEDLSLELDMTAAQIREVLLRVPRSVSLEIKVGKEKDTEL 322
>gi|296269171|ref|YP_003651803.1| RpoD subfamily RNA polymerase sigma-70 [Thermobispora bispora DSM
43833]
gi|296091958|gb|ADG87910.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobispora
bispora DSM 43833]
Length = 367
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 134/231 (58%), Gaps = 15/231 (6%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G ND +R++L LLTA+EE EL I+ + E L E
Sbjct: 66 GAPTNDLVRIYLREIGKVPLLTAEEEVELAKAIE-------------AGLFAEDKLCE-K 111
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
KA G+ C +L+ + G ++++LI ANLRLVV +AK+Y GRG+ DL+QEG++GL+++
Sbjct: 112 KAAGIECPELEDLVWEGIRAKQRLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 171
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R Q+
Sbjct: 172 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLHQDLG 231
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P E++A+ + + VE++ + I + P+S+Q P+ ++D+ DA
Sbjct: 232 REPTPEEIAKEMDLPVERVVEIQRIAQEPVSLQSPI-GEEDSDLGDFIEDA 281
>gi|357021635|ref|ZP_09083866.1| RNA polymerase sigma factor SigB [Mycobacterium thermoresistibile
ATCC 19527]
gi|356479383|gb|EHI12520.1| RNA polymerase sigma factor SigB [Mycobacterium thermoresistibile
ATCC 19527]
Length = 319
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 131/227 (57%), Gaps = 15/227 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A EE EL +I+ + L +Q L++ K +G
Sbjct: 21 DLVRVYLNGIGKTALLDAAEEVELAKRIE---------AGLYAQH-----LLKTKKRLGQ 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL++ + G +R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 NRKRDLEAIVRDGEEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q P
Sbjct: 127 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQTLGREPT 186
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E+LA GI VEK+ L+ +R P+S+ PV +D++ DA
Sbjct: 187 DEELAEESGIPVEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDA 233
>gi|158316157|ref|YP_001508665.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158111562|gb|ABW13759.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 400
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 131/220 (59%), Gaps = 13/220 (5%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L +LLTA+EE +L +I+ + KL + P L
Sbjct: 101 SDPVRMYLKAIGRVRLLTAEEEVDLAKRIEAGL---FASEKLAAIRRTSPRL-------- 149
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL+++VEKF
Sbjct: 150 --RRDLEAIEQDGQIAKRKLVEANLRLVVSIAKRYVGRGMLLLDLIQEGNLGLIRAVEKF 207
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ + +AI RTIR+P ++ ++KV +R +Q+ P
Sbjct: 208 DYTKGYKFSTYATWWIRQAVTRAIADQGRTIRIPVHMVETINKVTRIQRQLLQDLGREPS 267
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
E++A +V + ++E ++ + + P++++ P+ +QD+
Sbjct: 268 PEEIATQVDLAPHRVEEILKVGQTPVALETPIGEEQDSQL 307
>gi|325849230|ref|ZP_08170681.1| RNA polymerase sigma factor RpoD [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480230|gb|EGC83297.1| RNA polymerase sigma factor RpoD [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 612
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 118/193 (61%), Gaps = 13/193 (6%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKS---ELHSGNSSREKLINANL 338
I+DL R EK K + F + G D+K + N +++KL NL
Sbjct: 336 IKDLERFEKTKELCKKIFEDQ----------GFDADDVKRLNRAIFDANRAKQKLAETNL 385
Query: 339 RLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIF 398
RLVV +AK+Y GRG+S DL+QEG+MGLMK+V+K+ G +F++YA WW+RQ I +AI
Sbjct: 386 RLVVSIAKKYVGRGMSFLDLIQEGNMGLMKAVDKYDYNRGFKFSTYATWWIRQAITRAIA 445
Query: 399 QHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMP 458
+RTIR+P ++ ++K++ +R +Q+ P E++A ++GI VEK++ + I + P
Sbjct: 446 DQARTIRIPVHMVETINKLVRIQRQLVQDLGRDPSNEEIAEQMGIEVEKVQEIRKIAQEP 505
Query: 459 LSMQQPVWADQDT 471
+S++ P+ ++D+
Sbjct: 506 VSLETPIGEEEDS 518
>gi|212697198|ref|ZP_03305326.1| hypothetical protein ANHYDRO_01765 [Anaerococcus hydrogenalis DSM
7454]
gi|212675973|gb|EEB35580.1| hypothetical protein ANHYDRO_01765 [Anaerococcus hydrogenalis DSM
7454]
Length = 617
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 118/193 (61%), Gaps = 13/193 (6%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKS---ELHSGNSSREKLINANL 338
I+DL R EK K + F + G D+K + N +++KL NL
Sbjct: 341 IKDLERFEKTKELCKKIFEDQ----------GFDADDVKRLNRAIFDANRAKQKLAETNL 390
Query: 339 RLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIF 398
RLVV +AK+Y GRG+S DL+QEG+MGLMK+V+K+ G +F++YA WW+RQ I +AI
Sbjct: 391 RLVVSIAKKYVGRGMSFLDLIQEGNMGLMKAVDKYDYNRGFKFSTYATWWIRQAITRAIA 450
Query: 399 QHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMP 458
+RTIR+P ++ ++K++ +R +Q+ P E++A ++GI VEK++ + I + P
Sbjct: 451 DQARTIRIPVHMVETINKLVRIQRQLVQDLGRDPSNEEIAEQMGIEVEKVQEIRKIAQEP 510
Query: 459 LSMQQPVWADQDT 471
+S++ P+ ++D+
Sbjct: 511 VSLETPIGEEEDS 523
>gi|254416308|ref|ZP_05030062.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196176990|gb|EDX72000.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 416
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 132/261 (50%), Gaps = 43/261 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------- 294
D +RL+L +LL DEE ++Q +RL ++K
Sbjct: 59 TDLVRLYLQEIGRVRLLRRDEEVSEAQKVQRYMRLLDLRAKFATPEEPVIEHFVHLIETH 118
Query: 295 --LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
L SQ G P+L WA G+ LK L G ++
Sbjct: 119 DRLASQLGHRPSLERWATTAGVDVATLKPSLVKGKQRWAELAELTVKELEQVQAEGLQAK 178
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 238
Query: 391 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450
Q I +AI SRTIRLP +I L+K+ +A+R QE + ED+A+ + + ++
Sbjct: 239 QGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEQGRTATIEDIAKELEMDAPQVRE 298
Query: 451 LIFITRMPLSMQQPVWADQDT 471
++ +S++ V ++DT
Sbjct: 299 VLMRVPRSVSLEIKVGKEKDT 319
>gi|344999511|ref|YP_004802365.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces sp.
SirexAA-E]
gi|344315137|gb|AEN09825.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces sp.
SirexAA-E]
Length = 355
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 108/165 (65%)
Query: 316 CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
+DL + G + +LI ANLRLVV VAK+Y GRG+++ DL+QEG++GL+++VEKF
Sbjct: 105 AQDLGRLVVQGRMAERRLIEANLRLVVSVAKRYAGRGLTMLDLVQEGNLGLIRAVEKFDY 164
Query: 376 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKE 435
G +F++YA WW+RQ + +A+ +RTIR+P ++ L+++V+ +R +QE H P E
Sbjct: 165 TRGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGHEPSAE 224
Query: 436 DLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
++A ++ +T E++E ++ + + P+S+ PV + D F D
Sbjct: 225 EVAAQLDLTPERVETILRLAQEPVSLHAPVGEEDDVAFGDLIEDG 269
>gi|973980|gb|AAB05357.1| RNA polymerase sigma factor, partial [Cyanidium caldarium]
Length = 609
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 116/199 (58%), Gaps = 2/199 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT + L +I+ L + +L+ ++G+EP EWAKA+ +S +L L
Sbjct: 273 LLTESQVVSLAREIRKLALWNATRIQLRHEYGKEPDRTEWAKALNMSAEELTRNLLRAQR 332
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+RE L+ ANLRLVV VAKQ+ RG+S+ DL+QEGS+GL+K E+F + G RF++YA WW
Sbjct: 333 ARESLVAANLRLVVSVAKQFTNRGLSMQDLIQEGSIGLIKGAERFDYRTGFRFSTYAMWW 392
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ +++AI SR IR+P I L ++ A+ P +LA + I+V++L
Sbjct: 393 IRQAMQRAIADTSRPIRIPSTITDLSVQIYRARLELSSTLGRDPTDAELADFLDISVQRL 452
Query: 449 ERLIFITRM--PLSMQQPV 465
+ + T +S+ PV
Sbjct: 453 QDVKLYTNQSATVSLDAPV 471
>gi|405983613|ref|ZP_11041918.1| RNA polymerase sigma factor RpoD [Slackia piriformis YIT 12062]
gi|404388428|gb|EJZ83510.1| RNA polymerase sigma factor RpoD [Slackia piriformis YIT 12062]
Length = 392
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 169/322 (52%), Gaps = 39/322 (12%)
Query: 174 SKEAASLAENPKLNGAEFT--DISLTSSL-------GYPLEEVKQFSQPRFLERRSKKRK 224
SK+ + + L GA+ + D + +SL G P EE+K ++ +
Sbjct: 12 SKKNKTAVDEASLAGADMSLEDEKIDASLSDEDLLEGIPEEELKA----------AEDAE 61
Query: 225 VSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQD 284
V+ P+VT + R+++ S DP+R++L LLTA EE +L +I+
Sbjct: 62 VNLPKVTTRSSKVRRRSA---DTSVTMLTGDPVRMYLKEIGKVPLLTAAEEIDLAMKIEA 118
Query: 285 LI----RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRL 340
+ LEK + + RE + + +G+ + ++LI ANLRL
Sbjct: 119 GVAATAELEKAEEEGIELERRERRRLTRVEQVGIDAK-------------QQLIEANLRL 165
Query: 341 VVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQH 400
VV +AK+Y GRG+ DL+QEG++GL+++VEKF G +F++YA WW+RQ I +AI
Sbjct: 166 VVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQ 225
Query: 401 SRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLS 460
SRTIR+P ++ ++K++ +R +QE P E++ ++G+T E++ + I++ P+S
Sbjct: 226 SRTIRIPVHMVETINKLVRIQRQLLQELGRDPSPEEIGEKMGLTAERVREIQKISQEPVS 285
Query: 461 MQQPVWADQDTTFQSTFLDAAG 482
++ P+ ++D+ D A
Sbjct: 286 LETPIGEEEDSQLGDFIEDDAA 307
>gi|291277050|ref|YP_003516822.1| RNA polymerase sigma-70 factor [Helicobacter mustelae 12198]
gi|290964244|emb|CBG40093.1| RNA polymerase sigma factor (sigma-70) [Helicobacter mustelae
12198]
Length = 614
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 104/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF + +F++YA
Sbjct: 373 DKAKNKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFDYKRNFKFSTYAT 432
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW+RQ I +AI +RTIR+P ++ ++++ + R YIQE PD E +A +VG++V+
Sbjct: 433 WWIRQAISRAIADQARTIRIPIHMIETINRIHKIMRKYIQETGKEPDVEIIAEKVGLSVD 492
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I IT+ P+S++ P+ +D+D F
Sbjct: 493 KVKHVIKITKEPVSLEAPIGSDEDGKF 519
>gi|293376344|ref|ZP_06622581.1| RNA polymerase sigma factor RpoD [Turicibacter sanguinis PC909]
gi|325843397|ref|ZP_08167955.1| RNA polymerase sigma factor RpoD [Turicibacter sp. HGF1]
gi|292645033|gb|EFF63106.1| RNA polymerase sigma factor RpoD [Turicibacter sanguinis PC909]
gi|325489319|gb|EGC91693.1| RNA polymerase sigma factor RpoD [Turicibacter sp. HGF1]
Length = 456
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 144/248 (58%), Gaps = 18/248 (7%)
Query: 251 FDRNDPLRLFLWGPETRKLLTADEEFELIAQIQ------DLIRLEKEKSKLQSQF-GREP 303
F NDP+R++L +LL++ EE +I+ +++ + ++ L + R
Sbjct: 122 FKINDPVRMYLKEIGRVELLSSQEEINFAKKIERGDISSEILEIRRKNEPLPEELLERID 181
Query: 304 TLIEWAKA--------IG---LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
LI+ A IG LS + + + G ++++L+ ANLRLVV +AK++ GRG
Sbjct: 182 LLIQDAGEANDGNEFLIGVTELSDEEARRVIQEGEYAKKRLVEANLRLVVSIAKRHVGRG 241
Query: 353 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYT 412
+ DL+QEG+MGL+K+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++
Sbjct: 242 MLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVE 301
Query: 413 LLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTT 472
++K++ +R +QE P E+++ ++GI EK+ ++ I++ P+S++ PV + D+
Sbjct: 302 TINKLVRIQRQLVQELGREPLPEEISEKMGIAPEKVREILKISQEPVSLESPVGEEDDSH 361
Query: 473 FQSTFLDA 480
DA
Sbjct: 362 LGDFIPDA 369
>gi|428213655|ref|YP_007086799.1| sigma-70 family RNA polymerase sigma factor [Oscillatoria acuminata
PCC 6304]
gi|428002036|gb|AFY82879.1| RNA polymerase sigma factor, sigma-70 family [Oscillatoria
acuminata PCC 6304]
Length = 619
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 115/189 (60%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ++E L Q+Q I+LE+ K L S+ REPT EWA A GLS L+ + G
Sbjct: 198 LLKREDEISLAQQVQRWIQLEQGKQSLNSKLHREPTRSEWANATGLSLSQLEDAISKGRK 257
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+++ L+ +NLRLVV +AK YQ RG+ L DL+Q G+ GL+K+ EKF P G +F++YA W
Sbjct: 258 AQKSLVYSNLRLVVSIAKIYQHRGLELLDLIQHGNEGLIKATEKFDPIKGYKFSTYATHW 317
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I + + SR IRLP +I LSKV + R + H P E +A + ++VE++
Sbjct: 318 IRQHITRGLCNESRIIRLPVHIQESLSKVKKTTRHLTLKLEHIPSLEKIAVELEMSVEQV 377
Query: 449 ERLIFITRM 457
+ L I ++
Sbjct: 378 KFLRRINKL 386
>gi|427706144|ref|YP_007048521.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358649|gb|AFY41371.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 316
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 126/225 (56%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L LLT+D+E Q+Q +I +E +K +L Q REP L E A +
Sbjct: 7 DMVRVYLREIGQFPLLTSDQEITYGRQVQQMIAIEGQKKQLSQQLHREPKLAELADFVNK 66
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++ L G +++K++ ANLRLVV +AK+YQ R + L DL+QEG++GL + +EKF
Sbjct: 67 SETEVTQILQLGQRAKQKMVTANLRLVVSIAKKYQRRNLELLDLIQEGAIGLQRGIEKFD 126
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G + ++YAYWW+ Q I +AI + SR +RLP ++ L+++ + +R Q
Sbjct: 127 PNRGYKLSTYAYWWISQAITRAIAEKSRAVRLPIHVNEKLNQIKKVQRELFQTLGRRATV 186
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A+++ I ++ + +S+ V +QDT D
Sbjct: 187 TEIAQKLDIQASQIREYLSAASATISLDLKVGDNQDTELSELLSD 231
>gi|358463522|ref|ZP_09173562.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357070106|gb|EHI79876.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 392
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 134/219 (61%), Gaps = 15/219 (6%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E + A+ +
Sbjct: 93 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFAAEK--LSEARRVT 138
Query: 314 LSCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
++ R DL++ GN ++ KL+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEK
Sbjct: 139 VALRVDLEAVERDGNVAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEK 198
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+ P
Sbjct: 199 FDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREP 258
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E++ + + +T +K+ + +++ P+S++ P+ ++D+
Sbjct: 259 TPEEIGKEMDLTPDKVREIQKVSQEPVSLETPIGEEEDS 297
>gi|19910026|dbj|BAB87264.1| RNA polymerase sigma factor [Cyanophora paradoxa]
Length = 427
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 127/210 (60%), Gaps = 8/210 (3%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSG 326
+LL+A+EE EL QI+DL++LE K +L ++ GREP EWA A G +S + G
Sbjct: 116 ELLSAEEEIELSRQIRDLVQLETVKKRLAARIGREPREDEWAMAAGTQPGPAFQSRILKG 175
Query: 327 NSSREKLINANLRLVVHVAKQYQGR-GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
+R +L+ +NLR VV +AK+Y + + L DL+QEGS+GLMK+ E+F G +F +YA
Sbjct: 176 RRARARLVQSNLRWVVSIAKKYANKHTMPLQDLIQEGSIGLMKAAERFDLDKGFKFLTYA 235
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
WW+RQ I +++ RTIRLP +++ L + + ++ P E+LA + I V
Sbjct: 236 TWWIRQAIFRSLQDQGRTIRLPVHVHDSLYLIKKTRQQLASRLGRIPTPEELADELNIPV 295
Query: 446 EKLERLIFITR---MPLSMQQPVWADQDTT 472
RL FIT+ +P+S++ P+ ++ +T
Sbjct: 296 ---SRLAFITQAASLPISLESPISSETSST 322
>gi|427701550|ref|YP_007044772.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344718|gb|AFY27431.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 335
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 136/219 (62%), Gaps = 1/219 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ-FGREPTLIEWAKAI 312
D LR +L LL+ ++E L Q+Q+L+ LE+ + +L + G EP+ A
Sbjct: 24 GDSLRSYLRDIGRVPLLSHEQEITLGRQVQELMVLEELREELTLRSGGEEPSPELLAAEA 83
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
GL+ L+ LH+G ++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEK
Sbjct: 84 GLTPALLRKRLHAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEK 143
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F P G +F++YAYWW+RQ I +AI + SRTIRLP +I L+K+ + +R QE +P
Sbjct: 144 FDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTP 203
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+LA V + E+++ L+ R P+S++ V +DT
Sbjct: 204 TLSELALAVELPEEEVKDLLCRARQPVSLETKVGDGEDT 242
>gi|16330349|ref|NP_441077.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322090|ref|YP_005382943.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325259|ref|YP_005386112.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491143|ref|YP_005408819.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436410|ref|YP_005651134.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814507|ref|YP_007450959.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652838|dbj|BAA17757.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273442|dbj|BAK49929.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271409|dbj|BAL28928.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274579|dbj|BAL32097.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277749|dbj|BAL35266.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958268|dbj|BAM51508.1| RNA polymerase sigma factor [Bacillus subtilis BEST7613]
gi|451780476|gb|AGF51445.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 369
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 113/177 (63%), Gaps = 1/177 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL+A EE EL QI+ L+ E + +L Q R P+L EW +A+ R + L+
Sbjct: 71 LLSAAEEVELARQIRLLVSAEDVRQQLTQQLERTPSLQEWGQALEFPQVRQFEIWLYQLR 130
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ ++I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 131 AAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPDKGYKFSTYAYW 190
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGIT 444
W+RQ I + I +RTIRLP ++ L+K+ +A+R QE +P++ +LA + IT
Sbjct: 191 WIRQAITRTIANDARTIRLPIHVVEKLNKIKKAQRSLKQELKRNPNEGELAAALDIT 247
>gi|34558185|ref|NP_908000.1| RNA polymerase sigma factor RpoD [Wolinella succinogenes DSM 1740]
gi|34483904|emb|CAE10900.1| RNA POLYMERASE SIGMA FACTOR [Wolinella succinogenes]
Length = 620
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 104/148 (70%)
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
+ ++ K+ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 378 ADKAKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYA 437
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
WW+RQ I +AI +RTIR+P ++ ++++ + R Y+QE PD E ++ VG+ V
Sbjct: 438 TWWIRQAISRAIADQARTIRIPIHMIETINRINKIIRKYLQEEGKEPDVETISEEVGLPV 497
Query: 446 EKLERLIFITRMPLSMQQPVWADQDTTF 473
+K++ +I IT+ P+S++ P+ +D+D F
Sbjct: 498 DKVKNVIKITKEPISLEAPIGSDEDGKF 525
>gi|125543279|gb|EAY89418.1| hypothetical protein OsI_10924 [Oryza sativa Indica Group]
Length = 540
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 124/207 (59%), Gaps = 1/207 (0%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLTA +E E IQDL++LE + +L G EPT +WA+A G L+ L+ G
Sbjct: 238 RLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNYGI 297
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
S + ++ +N+RLV+ +A++++G G+ DL+QEG GL++ EKF G RF++Y++W
Sbjct: 298 SCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYSHW 357
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W++Q IRK++ + ++ IRLP ++ S+V E +R ++ P E++A G+ + +
Sbjct: 358 WIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPLRR 417
Query: 448 LERLIFITRMPLSMQQPVWADQDTTFQ 474
+E + + + +S+ V D T+Q
Sbjct: 418 VEAAMSLPKYTVSLTSKVGC-TDMTYQ 443
>gi|350270188|ref|YP_004881496.1| RNA polymerase sigma factor SigA [Oscillibacter valericigenes
Sjm18-20]
gi|348595030|dbj|BAK98990.1| RNA polymerase sigma factor SigA [Oscillibacter valericigenes
Sjm18-20]
Length = 493
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 135/239 (56%), Gaps = 25/239 (10%)
Query: 251 FDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAK 310
F +DP+R++L LLT DEE +L ++ E++ +L Q RE + A
Sbjct: 167 FAIDDPVRMYLKEIGKVPLLTPDEEVDLAQRMASGAEAERKLKELTGQ--REAG--DPAA 222
Query: 311 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370
A LK LHSG ++++KL ANLRLVV +AK+Y GRG+ DL+QEG++GL+K+V
Sbjct: 223 ATKEEEAALKKALHSGENAKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAV 282
Query: 371 EKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNH 430
EKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++KV+ R +QE H
Sbjct: 283 EKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIRVSRQLLQELGH 342
Query: 431 SPD------------------KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
P +ED +R +E++ ++ I + P+S++ P+ ++D+
Sbjct: 343 DPSPLEIAIEMNGGTAAWEKVREDEKKR---AIERIREILKIAQEPVSLETPIGEEEDS 398
>gi|260655747|ref|ZP_05861216.1| RNA polymerase major sigma factor [Jonquetella anthropi E3_33 E1]
gi|260629363|gb|EEX47557.1| RNA polymerase major sigma factor [Jonquetella anthropi E3_33 E1]
Length = 969
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 117/171 (68%), Gaps = 6/171 (3%)
Query: 304 TLIEWAKAIGLSCRDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEG 362
+L++ A+ + L+ R + +G+ ++++++INANLRLVV +AK+Y GRG+ DL+QEG
Sbjct: 711 SLLDAAEEVALAKR-----VEAGDETAKDEIINANLRLVVSIAKKYIGRGMQFLDLIQEG 765
Query: 363 SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKR 422
++GL+++VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R
Sbjct: 766 NLGLIRAVEKFDYRRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKMVRISR 825
Query: 423 LYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+Q+ P E++A + I E++E + I++MP+S++ P+ ++D+
Sbjct: 826 QLVQKLGREPSDEEIAAEMKIEPERVEEIKRISQMPVSLETPIGEEEDSQL 876
>gi|134098366|ref|YP_001104027.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea NRRL
2338]
gi|291006932|ref|ZP_06564905.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea NRRL
2338]
gi|133910989|emb|CAM01102.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
Length = 324
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 138/252 (54%), Gaps = 15/252 (5%)
Query: 230 VTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE 289
+T +T S A+++ L D +R++L G LLTA EE +L +I+
Sbjct: 1 MTVPQTITSDAAAIEADLDTQGPSADLVRVYLNGIGRTALLTAQEEVDLAKRIE------ 54
Query: 290 KEKSKLQSQFGREPTLIEWAKAIGLSCR-DLKSELHSGNSSREKLINANLRLVVHVAKQY 348
F ++E + + R DLK+ + G ++ L+ ANLRLVV +AK+Y
Sbjct: 55 ------AGVFANH--VLETSGKLSPERRSDLKAVVRDGVLAKNHLMEANLRLVVSLAKRY 106
Query: 349 QGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPE 408
GRG+ L DL+QEG++GL+++VEKF G +F++YA WW+RQ I + + SRTIRLP
Sbjct: 107 TGRGMPLLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 166
Query: 409 NIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWAD 468
++ ++K+ KR Q+ E+LA G+TVEK+ L+ +R P+S+ PV A+
Sbjct: 167 HLVEQVNKIARIKRDLHQKLGREATDEELANEAGLTVEKVADLLDHSRDPVSLDMPVGAE 226
Query: 469 QDTTFQSTFLDA 480
+D DA
Sbjct: 227 EDAPLGDFIEDA 238
>gi|269925486|ref|YP_003322109.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermobaculum
terrenum ATCC BAA-798]
gi|269789146|gb|ACZ41287.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobaculum
terrenum ATCC BAA-798]
Length = 338
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 137/229 (59%), Gaps = 20/229 (8%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGR-EPTL 305
LSE D D +R++L LLTA++E EL +++ R +K +S L S G+ EP
Sbjct: 35 LSEDLD--DSVRMYLREIGLVPLLTAEQEVELAKKME---RGKKAQSVLDS--GKYEP-- 85
Query: 306 IEWAKAIGLSCRD-LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSM 364
RD L +E+ G +R LI ANLRLVV VAK++ RG+SL DL++EG++
Sbjct: 86 ---------EQRDKLLAEVDEGERARRHLIEANLRLVVSVAKKHMNRGLSLLDLIEEGNI 136
Query: 365 GLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLY 424
GLM++ +KF + G +F++YA WW+RQ + +AI +RTIRLP +I ++ + +A R
Sbjct: 137 GLMRATDKFDYRKGFKFSTYATWWIRQAVTRAIADQARTIRLPVHITETMNHLYKASRKL 196
Query: 425 IQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
QE P E+LA +G+ EK+ ++ +R PLS++ PV D D++
Sbjct: 197 SQELGREPTCEELAEYMGMNPEKVRLIMRASRHPLSLEGPVGTDGDSSL 245
>gi|257791063|ref|YP_003181669.1| RpoD subfamily RNA polymerase sigma-70 subunit [Eggerthella lenta
DSM 2243]
gi|317488219|ref|ZP_07946788.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325830757|ref|ZP_08164141.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
gi|257474960|gb|ACV55280.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Eggerthella lenta
DSM 2243]
gi|316912661|gb|EFV34201.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325487164|gb|EGC89607.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
Length = 409
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 134/235 (57%), Gaps = 23/235 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFEL-------IAQIQDLIRLEKEKSKLQSQFGREPTLI 306
DP+R++L LLTA EE +L +A +++L + E E +L+ + R I
Sbjct: 105 GDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVAAMEELEKAEDEGIELERREKRRLGRI 164
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
E G ++++LI ANLRLVV +AK+Y GRG+ DL+QEG++GL
Sbjct: 165 E----------------QVGIDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 208
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
+++VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q
Sbjct: 209 IRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQ 268
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
E P E++ + +G+ E++ + I++ P+S++ P+ ++D+ D A
Sbjct: 269 ELGREPSPEEIGKEMGLPAERVREIQKISQEPVSLETPIGEEEDSQLGDFIEDDA 323
>gi|218439766|ref|YP_002378095.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172494|gb|ACK71227.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 418
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 119/209 (56%), Gaps = 22/209 (10%)
Query: 285 LIRLEKEKSKLQSQFGREPTLIEWAKAI----------------------GLSCRDLKSE 322
+ L +++ +L SQ G P+L +WA A GL ++L+
Sbjct: 113 FVNLVEKRDQLTSQLGHRPSLEKWADAAEVSVFEVKQILNEGKRHWANLAGLKVQELEQI 172
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
+G ++ +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF+
Sbjct: 173 QKAGIEAKNHMIKANLRLVVSVAKRYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFS 232
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG 442
+YAYWW+RQ I +AI SR IRLP +I L+K+ +A+R Q +P E+LA V
Sbjct: 233 TYAYWWIRQGITRAIATQSRIIRLPVHITEKLNKIKKAQRKMAQIKGRTPTMEELAVEVD 292
Query: 443 ITVEKLERLIFITRMPLSMQQPVWADQDT 471
+T ++ ++ +S++ V ++DT
Sbjct: 293 MTAPQIREVLMRVPRSVSLEIKVGKEKDT 321
>gi|225450015|ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 122/213 (57%)
Query: 262 WGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKS 321
+G +LT EE E +++ LE + ++ EPT +WA+A+G+ L
Sbjct: 122 FGAARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDK 181
Query: 322 ELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRF 381
L +G SRE++ + RLVV +A +YQG+G+SL DL+QEGS+GL++ E+F P G +
Sbjct: 182 MLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKL 241
Query: 382 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRV 441
++Y YWW+RQ I +AI SR IRLP +I +++K+ EA+ + + P +++A +
Sbjct: 242 STYVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFI 301
Query: 442 GITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 474
+ V + + +R P+S+ Q V + T Q
Sbjct: 302 DVNVSTVRLVSERSRTPISVDQAVTSQGCMTLQ 334
>gi|257458803|ref|ZP_05623926.1| RNA polymerase sigma factor RpoD [Campylobacter gracilis RM3268]
gi|257443791|gb|EEV18911.1| RNA polymerase sigma factor RpoD [Campylobacter gracilis RM3268]
Length = 626
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 106/147 (72%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
++++ ++ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 385 DNAKARMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYAT 444
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW+RQ I +AI +RTIR+P ++ ++++ + R Y+QEG PD +A+ VG++V+
Sbjct: 445 WWIRQAISRAIADQARTIRIPIHMIETINRINKITRKYMQEGGKEPDINVIAQEVGLSVD 504
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++++I IT+ P+S++ P+ + D F
Sbjct: 505 KVKQVIKITKEPISLEAPIGNEDDGKF 531
>gi|169630111|ref|YP_001703760.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus ATCC
19977]
gi|365870954|ref|ZP_09410495.1| RNA polymerase sigma factor SigB [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|397679875|ref|YP_006521410.1| RNA polymerase sigma factor sigB [Mycobacterium massiliense str. GO
06]
gi|414582578|ref|ZP_11439718.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|418247832|ref|ZP_12874218.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus 47J26]
gi|418421133|ref|ZP_12994309.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus subsp.
bolletii BD]
gi|419709733|ref|ZP_14237201.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M93]
gi|420881197|ref|ZP_15344564.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|420884840|ref|ZP_15348200.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|420889538|ref|ZP_15352886.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|420897176|ref|ZP_15360515.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|420899659|ref|ZP_15362991.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|420905543|ref|ZP_15368861.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|420910637|ref|ZP_15373949.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|420917089|ref|ZP_15380393.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|420922254|ref|ZP_15385551.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|420927916|ref|ZP_15391198.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|420932132|ref|ZP_15395407.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|420938383|ref|ZP_15401652.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|420942390|ref|ZP_15405647.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|420946950|ref|ZP_15410200.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|420952649|ref|ZP_15415893.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|420956818|ref|ZP_15420055.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
gi|420961864|ref|ZP_15425089.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|420967525|ref|ZP_15430729.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|420972741|ref|ZP_15435934.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|420978256|ref|ZP_15441434.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|420983641|ref|ZP_15446808.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|420992777|ref|ZP_15455924.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|420998629|ref|ZP_15461766.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|421003066|ref|ZP_15466190.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|421007918|ref|ZP_15471029.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|421013609|ref|ZP_15476690.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|421018559|ref|ZP_15481617.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|421024676|ref|ZP_15487720.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|421029721|ref|ZP_15492753.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|421035126|ref|ZP_15498146.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|421050031|ref|ZP_15513025.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|169242078|emb|CAM63106.1| RNA polymerase sigma factor [Mycobacterium abscessus]
gi|353452325|gb|EHC00719.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus 47J26]
gi|363994757|gb|EHM15975.1| RNA polymerase sigma factor SigB [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|363997600|gb|EHM18811.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus subsp.
bolletii BD]
gi|382943614|gb|EIC67928.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M93]
gi|392080603|gb|EIU06429.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|392086106|gb|EIU11931.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|392087286|gb|EIU13108.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|392096488|gb|EIU22283.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|392101006|gb|EIU26797.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|392103447|gb|EIU29233.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|392112631|gb|EIU38400.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|392117730|gb|EIU43498.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|392121229|gb|EIU46995.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|392132090|gb|EIU57836.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|392135149|gb|EIU60890.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|392136891|gb|EIU62628.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|392143898|gb|EIU69623.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|392149817|gb|EIU75531.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|392153980|gb|EIU79686.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|392157961|gb|EIU83658.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|392165633|gb|EIU91319.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|392166530|gb|EIU92215.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|392168637|gb|EIU94315.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|392185561|gb|EIV11210.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|392186441|gb|EIV12088.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|392194524|gb|EIV20144.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|392199371|gb|EIV24981.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|392201957|gb|EIV27555.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|392208434|gb|EIV34008.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|392211473|gb|EIV37039.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|392224473|gb|EIV49993.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|392225858|gb|EIV51373.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|392238634|gb|EIV64127.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898]
gi|392249329|gb|EIV74804.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|392250032|gb|EIV75506.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|392253717|gb|EIV79185.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
gi|395458140|gb|AFN63803.1| RNA polymerase sigma factor sigB [Mycobacterium massiliense str. GO
06]
Length = 323
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 129/217 (59%), Gaps = 15/217 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL +I+ + L +Q L++ K +G
Sbjct: 25 DLVRVYLNGIGKTALLTAEDEVELAKRIE---------AGLYAQH-----LLDTKKRLGE 70
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ +DL + GN++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 71 ARKKDLAVIVREGNAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 130
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q
Sbjct: 131 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQRLGREAS 190
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
E+LA GI VEK+ L+ +R P+S+ PV D++
Sbjct: 191 DEELAEESGIPVEKIGDLLDHSRDPVSLDMPVGTDEE 227
>gi|336177646|ref|YP_004583021.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia symbiont of
Datisca glomerata]
gi|334858626|gb|AEH09100.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia symbiont
of Datisca glomerata]
Length = 392
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 130/218 (59%), Gaps = 12/218 (5%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E K
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFASEKLAAATRKTSP 139
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 140 QMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 199
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ + +AI +RTIR+P ++ ++K++ +R +Q+ P
Sbjct: 200 DYTKGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPS 259
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E++A+ + +T +K+ ++ +++ P+S++ P+ ++D+
Sbjct: 260 PEEIAKEMDLTPDKVREILKVSQEPVSLETPIGEEEDS 297
>gi|428308709|ref|YP_007119686.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428250321|gb|AFZ16280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 327
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 123/225 (54%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K+ L + REPT EW +
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIVYGKQVQQMMLLMDAKAALAEKLQREPTTKEWTMHVKH 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
L + G ++ K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 DEATLNKIVSQGTWAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +R IRLP +I L+K+ + +R Q+ +
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELSQKFGRNATP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++ + + + ++ + I R P+S+ V +QDT D
Sbjct: 198 AEIGQELDLEPAQIREYLSIARQPVSLDVRVGDNQDTELSDLLED 242
>gi|424844271|ref|ZP_18268882.1| RNA polymerase sigma factor, sigma-70 family [Jonquetella anthropi
DSM 22815]
gi|363985709|gb|EHM12539.1| RNA polymerase sigma factor, sigma-70 family [Jonquetella anthropi
DSM 22815]
Length = 805
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 117/171 (68%), Gaps = 6/171 (3%)
Query: 304 TLIEWAKAIGLSCRDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEG 362
+L++ A+ + L+ R + +G+ ++++++INANLRLVV +AK+Y GRG+ DL+QEG
Sbjct: 547 SLLDAAEEVALAKR-----VEAGDETAKDEIINANLRLVVSIAKKYIGRGMQFLDLIQEG 601
Query: 363 SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKR 422
++GL+++VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R
Sbjct: 602 NLGLIRAVEKFDYRRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKMVRISR 661
Query: 423 LYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+Q+ P E++A + I E++E + I++MP+S++ P+ ++D+
Sbjct: 662 QLVQKLGREPSDEEIAAEMKIEPERVEEIKRISQMPVSLETPIGEEEDSQL 712
>gi|78777303|ref|YP_393618.1| RNA polymerase sigma factor RpoD [Sulfurimonas denitrificans DSM
1251]
gi|78497843|gb|ABB44383.1| sigma 28 (Flagella/Sporulation) [Sulfurimonas denitrificans DSM
1251]
Length = 623
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 103/145 (71%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
S+ K+ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G +F++YA WW
Sbjct: 384 SKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWW 443
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIR+P ++ ++++ + R ++QE PD E +A VG++VEK+
Sbjct: 444 IRQAISRAIADQARTIRIPIHMIETINRINKIMRKHLQEHGKEPDVEVIALEVGLSVEKV 503
Query: 449 ERLIFITRMPLSMQQPVWADQDTTF 473
+ +I IT+ P+S++ P+ ++ D F
Sbjct: 504 KNVIKITKEPISLEAPIGSEDDGRF 528
>gi|452821128|gb|EME28162.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 670
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 2/245 (0%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
N+ +A+ KK R D L +L L+ EE + +I L RLE + L+
Sbjct: 323 NNNEANGKKGKGINSRRVDSLNTYLSEIGQVNRLSLVEEKVICEEIARLTRLEAVREDLR 382
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ GR P EWA LS +L+ +L G ++ +++ ANLRLV+ AK+Y+ RG++
Sbjct: 383 RKMGRLPRENEWAWEANLSVSELRGKLIKGRRAKNRMVAANLRLVICFAKRYRNRGVAFQ 442
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSK 416
DL+QEGS+GL++ VEK+ G RF++YA WW+RQ I KA+ + SR RLP ++ ++
Sbjct: 443 DLVQEGSIGLIRGVEKYDAHRGFRFSTYASWWIRQGIHKALLECSRMFRLPVHVNEMIKD 502
Query: 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQST 476
+ + + P K ++A +VG+ EK+ L+ T+ LS++ P+ D ++T
Sbjct: 503 IRKCSLELMTSLGREPTKLEIAMKVGMPEEKVIFLLQRTQSALSLEMPI--GHDMECRTT 560
Query: 477 FLDAA 481
D
Sbjct: 561 LADVV 565
>gi|86608149|ref|YP_476911.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556691|gb|ABD01648.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 361
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 122/206 (59%)
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
EE EL +IQ + +++ + + + Q G +P+ A+A+ +S L+S + G ++ KL
Sbjct: 69 EEIELSRKIQQKLLIDQARQEWRQQRGEDPSDEALAEALQISVSTLRSRIRQGEQAQRKL 128
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTI 393
INANLRLVV VAK+Y RG+ DL+QEG++GL+++ EKF + G RF++YA+WW+RQ I
Sbjct: 129 INANLRLVVSVAKKYLNRGVPFLDLIQEGNIGLIRATEKFNAERGFRFSTYAHWWIRQGI 188
Query: 394 RKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453
+ I +RTIRLP ++ + + R ++ P + +LA +GI V+KL +
Sbjct: 189 TRCIANQARTIRLPVHMVDKVRLLKRTNRELMKLQGRRPTEAELAEALGIKVKKLRMIQQ 248
Query: 454 ITRMPLSMQQPVWADQDTTFQSTFLD 479
+PLS+ PV + ++ D
Sbjct: 249 AAALPLSLDVPVGQEGESRLGDLLQD 274
>gi|419716788|ref|ZP_14244183.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M94]
gi|420864424|ref|ZP_15327814.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|420869215|ref|ZP_15332597.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|420873659|ref|ZP_15337036.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|420987323|ref|ZP_15450479.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|421039706|ref|ZP_15502715.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|421044014|ref|ZP_15507015.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
gi|382940349|gb|EIC64673.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M94]
gi|392068685|gb|EIT94532.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|392071399|gb|EIT97245.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|392072687|gb|EIT98528.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|392181602|gb|EIV07253.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|392224798|gb|EIV50317.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|392237866|gb|EIV63360.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
Length = 323
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 129/217 (59%), Gaps = 15/217 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL +I+ + L +Q L++ K +G
Sbjct: 25 DLVRVYLNGIGKTALLTAEDEVELAKRIE---------AGLYAQH-----LLDTKKRLGE 70
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ +DL + GN++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 71 ARKKDLAVIVREGNAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 130
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q
Sbjct: 131 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQRLGREAT 190
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
E+LA GI VEK+ L+ +R P+S+ PV D++
Sbjct: 191 DEELAEESGIPVEKIGDLLDHSRDPVSLDMPVGTDEE 227
>gi|427729632|ref|YP_007075869.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365551|gb|AFY48272.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 388
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 132/211 (62%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L ++ + L+ + G++PT + A ++ + L++ L+ G
Sbjct: 90 LLKPDEEVELAKRVRFLEDVKDLQEALELELGQQPTKAQIADKFEITEKQLENRLYQGRV 149
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 150 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 209
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIRLP +I L+K+ +A+R Q+ + +P + ++A + ++V++L
Sbjct: 210 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEAEIAEFLEMSVQQL 269
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+L + R LS+ V ++DT D
Sbjct: 270 RQLQQLRRQALSLNHRVGKEEDTELMDLLED 300
>gi|339444818|ref|YP_004710822.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
gi|338904570|dbj|BAK44421.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
Length = 419
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 133/236 (56%), Gaps = 23/236 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFEL-------IAQIQDLIRLEKEKSKLQSQFGREPTLI 306
DP+R++L LLTA EE +L +A ++L + E E +L+ + R I
Sbjct: 115 GDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVAATEELEKAEDEGIELERREKRRLGRI 174
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
E G ++++LI ANLRLVV +AK+Y GRG+ DL+QEG++GL
Sbjct: 175 E----------------QVGIDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 218
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
+++VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q
Sbjct: 219 IRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQ 278
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E P E++ + +G+ E++ + I++ P+S++ P+ ++D+ D A
Sbjct: 279 ELGREPSPEEIGKEMGLPAERVREIQKISQEPVSLETPIGEEEDSQLGDFIEDDAA 334
>gi|409993030|ref|ZP_11276188.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
gi|409936091|gb|EKN77597.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
Length = 409
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 107/166 (64%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA+ LS +LK G +++ +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 149 WAELANLSVEELKQVQREGIQAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 208
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 427
++VEKF P G RF++Y+YWW+RQ I +AI SRTIRLP +I L+K+ +A+R QE
Sbjct: 209 RAVEKFDPTRGYRFSTYSYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQE 268
Query: 428 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+ + +D+A + +T +++ ++ +S++ V D+DT
Sbjct: 269 KSRTATIDDIATELKMTPDQIREVLLRVPRSVSLETKVGTDKDTEL 314
>gi|209525810|ref|ZP_03274346.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064796|ref|ZP_17053586.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209493783|gb|EDZ94102.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406714039|gb|EKD09207.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 407
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 107/166 (64%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA+ LS +LK G +++ +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 147 WAELANLSVEELKQVQREGLQAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 206
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 427
++VEKF P G RF++Y+YWW+RQ I +AI SRTIRLP +I L+K+ +A+R QE
Sbjct: 207 RAVEKFDPTRGYRFSTYSYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQE 266
Query: 428 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+ + +D+A + +T +++ ++ +S++ V D+DT
Sbjct: 267 KSRTATIDDIATELKMTPDQIREVLLRVPRSVSLETKVGTDKDTEL 312
>gi|291520418|emb|CBK75639.1| RNA polymerase, sigma 70 subunit, RpoD [Butyrivibrio fibrisolvens
16/4]
Length = 376
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 140/254 (55%), Gaps = 23/254 (9%)
Query: 221 KKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEF--EL 278
K K+ Q+ TY +K G D N F GP LL +D+E ++
Sbjct: 47 KDYKIDAKQMERILTYLDKK---------GIDVN-----FSSGPSDALLLASDDEDLEDI 92
Query: 279 IAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN-SSREKLINAN 337
+ D + +E + G+ P L + +L ++ G+ ++ KL AN
Sbjct: 93 DMSVPDSVSIEDPVRMYLKEIGKVPLLSAEEEV------ELAQKMEDGDQEAKNKLAEAN 146
Query: 338 LRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAI 397
LRLVV +AK+Y GRG+ DL+QEG++GLMK+VEKF G +F++YA WW+RQ I +AI
Sbjct: 147 LRLVVSIAKRYVGRGMLFLDLIQEGNLGLMKAVEKFDYHKGYKFSTYATWWIRQAITRAI 206
Query: 398 FQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRM 457
+RTIR+P ++ ++K++ R +QE P E++A +GITV+++ ++ I++
Sbjct: 207 ADQARTIRIPVHMVETINKLIRVSRQLLQEYGREPTPEEIAAAMGITVDRVHEILKISQE 266
Query: 458 PLSMQQPVWADQDT 471
P+S++ P+ ++D+
Sbjct: 267 PVSLETPIGEEEDS 280
>gi|189424079|ref|YP_001951256.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacter lovleyi
SZ]
gi|189420338|gb|ACD94736.1| RNA polymerase, sigma 70 subunit, RpoD family [Geobacter lovleyi
SZ]
Length = 586
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 122/190 (64%), Gaps = 7/190 (3%)
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
+K++ + G + T E +KAI R ++ H ++ +LI ANLRLVV +AK+Y RG
Sbjct: 319 TKVEQESGFKAT--ELSKAI----RAIREGEHKARIAKSELIEANLRLVVSIAKKYTNRG 372
Query: 353 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYT 412
+ DL+QEG++GLMK+V+KF+ Q G +F++YA WW+RQ I +AI +RTIR+P ++
Sbjct: 373 LQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIE 432
Query: 413 LLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTT 472
++K++ R +QE P E++A R+ + ++K+ +++ I + P+S++ P+ ++D+
Sbjct: 433 TINKLIRTSRQLVQENGREPSPEEIADRMQLPLDKVRKVLKIAKEPISLETPIGEEEDSH 492
Query: 473 FQSTFLDAAG 482
F++ G
Sbjct: 493 L-GDFIEDKG 501
>gi|313682108|ref|YP_004059846.1| RNA polymerase sigma-70 subunit RpoD [Sulfuricurvum kujiense DSM
16994]
gi|313154968|gb|ADR33646.1| RNA polymerase, sigma 70 subunit, RpoD [Sulfuricurvum kujiense DSM
16994]
Length = 620
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 103/145 (71%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
S+ ++ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G +F++YA WW
Sbjct: 381 SKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWW 440
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIR+P ++ ++++ + R ++QE PD E +A VG++VEK+
Sbjct: 441 IRQAISRAIADQARTIRIPIHMIETINRINKIMRKHLQEHGKEPDVETIAEEVGLSVEKV 500
Query: 449 ERLIFITRMPLSMQQPVWADQDTTF 473
+ +I IT+ P+S++ P+ ++D F
Sbjct: 501 KNVIKITKEPISLEAPIGNEEDGRF 525
>gi|282900303|ref|ZP_06308254.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
gi|281194808|gb|EFA69754.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
Length = 399
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 129/211 (61%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L ++ ++ L+ Q G + E A L+ + L+S L+ G
Sbjct: 101 LLKPDEEVELARRVRFLEEVKDLQAALEEQLGHSVSKSEVASKFDLNEKQLESRLYQGRV 160
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 161 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 220
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIRLP +I L+K+ +A+R Q+ +P + ++A + +TV++L
Sbjct: 221 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFARNPTEVEMAEFLEMTVQQL 280
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+L + R LS+ V ++DT D
Sbjct: 281 RQLQQLRRQALSLNHRVGKEEDTELMDLLED 311
>gi|158522162|ref|YP_001530032.1| RpoD family RNA polymerase sigma factor [Desulfococcus oleovorans
Hxd3]
gi|158510988|gb|ABW67955.1| RNA polymerase, sigma 70 subunit, RpoD family [Desulfococcus
oleovorans Hxd3]
Length = 738
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 103/145 (71%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+S+ +LI ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 498 KASKSELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYAT 557
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW+RQ I +AI +RTIR+P ++ ++K++ R +QE + P E++A ++ I +E
Sbjct: 558 WWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQERGYEPSPEEIAEKMEIPLE 617
Query: 447 KLERLIFITRMPLSMQQPVWADQDT 471
K+ R++ I R P+S++ P+ ++D+
Sbjct: 618 KVRRVLKIAREPISLETPIGEEEDS 642
>gi|312200424|ref|YP_004020485.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311231760|gb|ADP84615.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 403
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 129/227 (56%), Gaps = 12/227 (5%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R++L LLTA+ E +L +I+ + L + E + E + L
Sbjct: 104 DPVRMYLASIGKTPLLTAEGEVDLAKRIE---------AGLFAGHKLETAVEEMSPGQRL 154
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
DL + G + +L+ ANLRLVV +AK+Y GRG+ D++QEG++GL+++VEKF
Sbjct: 155 ---DLIAVERDGQVAARQLVEANLRLVVSIAKRYAGRGMLFLDVVQEGNLGLIRAVEKFD 211
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
G +F++YA WWVRQ I +A+ SRT+RLP ++ LL++++ +R + E +
Sbjct: 212 YTKGYKFSTYATWWVRQAITRALADQSRTVRLPVHLVELLNQLVRLRRELLMELGREATR 271
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
E+LA +G+T +++ L I+R P+S+ PV D DT D A
Sbjct: 272 EELATALGVTANRVDELQRISREPVSLDSPVGDDADTELGDLIEDTA 318
>gi|300781025|ref|ZP_07090879.1| RNA polymerase principal sigma factor SigB [Corynebacterium
genitalium ATCC 33030]
gi|300532732|gb|EFK53793.1| RNA polymerase principal sigma factor SigB [Corynebacterium
genitalium ATCC 33030]
Length = 330
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 123/217 (56%), Gaps = 12/217 (5%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A+EE EL QI+ L +Q + E +A
Sbjct: 31 DLVRVYLNGIGKTALLNAEEEVELAQQIE---------VGLYAQHLLDDPDTELTRA--- 78
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 79 KSRDLKILAKQGRKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 138
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ +R Q P
Sbjct: 139 YSKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIRREMYQSLGREPSN 198
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E+LA GI K+E L+ +R P+S+ PV AD++
Sbjct: 199 EELAEESGIDESKIEMLLRQSRDPVSLDMPVGADEEA 235
>gi|148243538|ref|YP_001228695.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851848|emb|CAK29342.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 370
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 151/286 (52%), Gaps = 47/286 (16%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQ------------- 283
+R+AS K++ + D +RL+L LL+ +EE L +Q
Sbjct: 2 TNRQASSKRRST-----ADLVRLYLQDIGRVDLLSHEEELTLARLVQKREQLVVERRGLC 56
Query: 284 ----DLIRLEK-EKSKLQ--SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSS------- 329
D+ RLE E+ +L+ S+ G +P+ +WA+A GLS +L++++ +GN +
Sbjct: 57 SKHPDVARLEALEEQRLRETSKLGHQPSQSQWAQACGLSAGELRAQVQAGNKAWAELLDM 116
Query: 330 ---------------REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+E++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL + VEK+
Sbjct: 117 SPGDLQRQLLHGRRAKERMIQANLRLVVAVAKKYQHRGMELLDLVQEGTLGLERGVEKYD 176
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G RF++YAYWW+RQ I +AI SRTIRLP +I L+++ +A+R +
Sbjct: 177 PTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKKAQRDIASRLGRTATL 236
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
+DL++ + ++ E + + + +S+ V D DT D
Sbjct: 237 KDLSQELQLSEEVVRQTLMRVPRSVSLDTRVGRDMDTELGDLLEDG 282
>gi|410995981|gb|AFV97446.1| hypothetical protein B649_05660 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 619
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 103/145 (71%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
S+ ++ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G +F++YA WW
Sbjct: 380 SKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWW 439
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIR+P ++ ++++ + R ++QE PD E +A VG++VEK+
Sbjct: 440 IRQAISRAIADQARTIRIPIHMIETINRINKIMRKHLQEHGKEPDVETIAEEVGLSVEKV 499
Query: 449 ERLIFITRMPLSMQQPVWADQDTTF 473
+ +I IT+ P+S++ P+ ++D F
Sbjct: 500 KNVIKITKEPISLEAPIGNEEDGRF 524
>gi|9837536|gb|AAG00589.1|AF288784_1 SigC [Synechococcus elongatus PCC 7942]
Length = 398
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 139/261 (53%), Gaps = 43/261 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEE----------FELIAQ-----------IQDLIRLEKEK 292
D +RL+L +LL DEE +L+A ++D + L++ +
Sbjct: 41 TDLIRLYLQDIGRVRLLGRDEEVSEARWVQRYMQLLAVRNCVAVEEGGVLKDYVDLQEGR 100
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELH----------------------SGNSSR 330
+L +Q G P+ WAK + S +L+ L G ++
Sbjct: 101 DRLTAQLGHRPSFEAWAKIVDCSLTELRQALQLGLHRWAEVCQLDLEELKQVCKEGQRAK 160
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
+ +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 161 DHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 220
Query: 391 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450
Q I +AI SRTIRLP ++ L+++ +A+R Q + + E++A+ + +T +++
Sbjct: 221 QGITRAIATQSRTIRLPVHVTEKLTRIKKAQRKIAQTKGRTANLEEIAQELEMTPDQVRE 280
Query: 451 LIFITRMPLSMQQPVWADQDT 471
++ +S++ V ++DT
Sbjct: 281 VLLRVPKSISLETRVGKEKDT 301
>gi|145224529|ref|YP_001135207.1| RNA polymerase sigma factor SigB [Mycobacterium gilvum PYR-GCK]
gi|145217015|gb|ABP46419.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium gilvum
PYR-GCK]
Length = 329
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 130/227 (57%), Gaps = 15/227 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I+ + L +Q L+ K +G
Sbjct: 31 DLVRVYLNGIGKTALLTAADEVELAKRIE---------AGLYAQH-----LLATRKRLGE 76
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 77 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 136
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q
Sbjct: 137 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREAT 196
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E+LA GI VEK+ L+ +R P+S+ PV +D++ DA
Sbjct: 197 DEELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDA 243
>gi|95928999|ref|ZP_01311744.1| RNA polymerase, sigma 38 subunit, RpoS [Desulfuromonas acetoxidans
DSM 684]
gi|95134900|gb|EAT16554.1| RNA polymerase, sigma 38 subunit, RpoS [Desulfuromonas acetoxidans
DSM 684]
Length = 583
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 111/165 (67%), Gaps = 5/165 (3%)
Query: 322 ELHSG----NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
E+H G +++ +L+ ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q
Sbjct: 333 EVHRGEWRAKAAKTELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQR 392
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++
Sbjct: 393 GYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQELGREPIPEEI 452
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
A R+ + +EK+ R++ I + P+S++ P+ ++D++ F++ G
Sbjct: 453 AERMDLPLEKVRRVLKIAKEPISLETPIGEEEDSSL-GDFIEDKG 496
>gi|358456365|ref|ZP_09166589.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357080541|gb|EHI89976.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 413
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 130/229 (56%), Gaps = 14/229 (6%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+RL+L LLTA E +L +I+ + L + + L A +
Sbjct: 113 HDPVRLYLTSIGKTPLLTAAGEVDLAKRIE---------AGLFAGY----KLANDADDMS 159
Query: 314 LSCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
R DL++ G + +L+ ANLRLVV +A++Y GRG+ D++QEG++GL+++VEK
Sbjct: 160 PRQRLDLEAIELDGQRANRQLVEANLRLVVSIARRYAGRGMLFLDVVQEGNLGLIRAVEK 219
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F G +F++YA WWVRQ I +A+ SRT+RLP ++ LL+++ +R + E P
Sbjct: 220 FDYTKGYKFSTYATWWVRQAITRALADQSRTVRLPVHLVELLNQLARLRRELLMELGREP 279
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+E+LA +G+T +++ L I+R P+S+ PV D DT D A
Sbjct: 280 SREELATALGVTANRVDELWRISREPVSLDSPVGEDADTDLGDLIEDTA 328
>gi|56752254|ref|YP_172955.1| RNA polymerase sigma factor SigC [Synechococcus elongatus PCC 6301]
gi|81300658|ref|YP_400866.1| RNA polymerase sigma factor SigC [Synechococcus elongatus PCC 7942]
gi|56687213|dbj|BAD80435.1| group2 RNA polymerase sigma factor RpoD5 [Synechococcus elongatus
PCC 6301]
gi|81169539|gb|ABB57879.1| group2 RNA polymerase sigma factor SigC [Synechococcus elongatus
PCC 7942]
Length = 398
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 139/261 (53%), Gaps = 43/261 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEE----------FELIAQ-----------IQDLIRLEKEK 292
D +RL+L +LL DEE +L+A ++D + L++ +
Sbjct: 41 TDLIRLYLQDIGRVRLLGRDEEVSEARWVQRYMQLLAVRNCVAVEEGGVLKDYVDLQEGR 100
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELH----------------------SGNSSR 330
+L +Q G P+ WAK + S +L+ L G ++
Sbjct: 101 DRLTAQLGHRPSFEAWAKIVDCSLTELRQALQLGLHRWAEVCQLDLEELKQVCKEGQRAK 160
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
+ +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 161 DHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 220
Query: 391 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450
Q I +AI SRTIRLP ++ L+++ +A+R Q + + E++A+ + +T +++
Sbjct: 221 QGITRAIATQSRTIRLPVHVTEKLNRIKKAQRKIAQTKGRTANLEEIAQELEMTPDQVRE 280
Query: 451 LIFITRMPLSMQQPVWADQDT 471
++ +S++ V ++DT
Sbjct: 281 VLLRVPKSISLETRVGKEKDT 301
>gi|334337294|ref|YP_004542446.1| RpoD subfamily RNA polymerase sigma-70 subunit [Isoptericola
variabilis 225]
gi|334107662|gb|AEG44552.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Isoptericola
variabilis 225]
Length = 547
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 132/231 (57%), Gaps = 13/231 (5%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP++ +L LL A++E EL +I+ + E+ +L +FG W K
Sbjct: 239 DPVKDYLKQIGKVALLNAEQEVELAKRIEAGLFAEE---RLSKEFGEG-----WDKTKAS 290
Query: 315 S-----CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ RDL+ H G ++ L+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++
Sbjct: 291 AEERRLYRDLQWIAHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA 350
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
VEKF G +F++YA WW+RQ I +A+ +RTIR+P ++ +++K+ +R +Q+
Sbjct: 351 VEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLG 410
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P E+LA+ + +T EK+ + R P+S+ P+ D D+ F D+
Sbjct: 411 REPTPEELAKELDMTPEKVVEVQKYGREPISLSTPLGEDGDSEFGDLIEDS 461
>gi|380302336|ref|ZP_09852029.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium squillarum
M-6-3]
Length = 458
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 135/230 (58%), Gaps = 20/230 (8%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLI----RLEKEKSKLQSQFGREPTLIEWAK 310
DP++ +L LL A +E EL +I+ + +L++++S ++++ GRE +I
Sbjct: 159 DPVKDYLKQIGKVALLNAAQEVELAERIEAGLYAEQKLKRDESIVRTKPGRELAMI---- 214
Query: 311 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370
+ G ++++ L+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++V
Sbjct: 215 ------------VEDGRAAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAV 262
Query: 371 EKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNH 430
EKF G +F++YA WW+RQ I +A+ +RTIR+P ++ +++K+ +R +Q+
Sbjct: 263 EKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGR 322
Query: 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
P E+LA+ + +T EK+ + R P+S+ P+ D D+ F D+
Sbjct: 323 EPTPEELAKELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDS 372
>gi|56416704|ref|YP_153778.1| RNA polymerase sigma factor [Anaplasma marginale str. St. Maries]
gi|56387936|gb|AAV86523.1| RNA polymerase sigma factor [Anaplasma marginale str. St. Maries]
Length = 632
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 103/156 (66%)
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
+ N +++++I ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF + G +F++
Sbjct: 390 RTANKAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFST 449
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGI 443
YA WWVRQ I +AI +RTIR+P ++ ++K+ R + E P E+L+ R+G+
Sbjct: 450 YATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEIGREPTLEELSTRLGM 509
Query: 444 TVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
VEK+ +++ I + P+S++ P+ D +TF D
Sbjct: 510 NVEKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIED 545
>gi|428777601|ref|YP_007169388.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428691880|gb|AFZ45174.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 375
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 112/175 (64%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL Q++ E ++ +L + G PT + A+A+ + ++L +L+ G
Sbjct: 78 LLQPDEEVELAQQVKLAADFEHKRQELAEKLGSPPTKQQLAEALEMGVKELDRKLYQGRV 137
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ ++I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYWW
Sbjct: 138 AKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWW 197
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGI 443
+RQ I + I +RTIRLP +I L+K+ +A+R QE +P + +LA+ + +
Sbjct: 198 IRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRDLKQELQRNPTEAELAQALEV 252
>gi|359685998|ref|ZP_09255999.1| RNA polymerase sigma-70 factor [Leptospira santarosai str.
2000030832]
gi|422004532|ref|ZP_16351749.1| RNA polymerase sigma-70 factor [Leptospira santarosai serovar
Shermani str. LT 821]
gi|417256834|gb|EKT86248.1| RNA polymerase sigma-70 factor [Leptospira santarosai serovar
Shermani str. LT 821]
Length = 585
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 131/211 (62%), Gaps = 17/211 (8%)
Query: 265 ETRKLLTADEEFELIAQIQD----LIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
E R + DE E+I I++ L R+E+E + +W + I R++
Sbjct: 292 EVRMGVNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIK------DWGEKIIKGEREI- 344
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
+ ++++L+ ANLRLVV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +
Sbjct: 345 ------SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYK 398
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 440
F++YA WW+RQ I +AI +RTIR+P ++ ++KV+ RL+IQE P+ E++A R
Sbjct: 399 FSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAER 458
Query: 441 VGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+G V+K++ + + R P+S++ PV +++D+
Sbjct: 459 LGWPVQKVKMVKNVAREPISLEIPVGSEEDS 489
>gi|297544972|ref|YP_003677274.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842747|gb|ADH61263.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 357
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 127/239 (53%), Gaps = 40/239 (16%)
Query: 233 HETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
E N + L EG +DP+R++L LLT +EE EL +I+
Sbjct: 64 QEEINEEDLDLDLSLPEGISIDDPVRMYLKEIGKIPLLTPEEEIELAKRIE--------- 114
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
++++LI ANLRLVV +AK+Y GRG
Sbjct: 115 -------------------------------QGDEEAKKRLIEANLRLVVSIAKRYVGRG 143
Query: 353 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYT 412
+ DL+QEG++GL+K+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++
Sbjct: 144 MLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVE 203
Query: 413 LLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
++K++ +R +QE P E+LA+ +G+ EK+ ++ I + P+S++ P+ ++D+
Sbjct: 204 TINKLIRVQRQLLQELGREPTPEELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDS 262
>gi|418747116|ref|ZP_13303426.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str.
CBC379]
gi|418752464|ref|ZP_13308725.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str.
MOR084]
gi|421110278|ref|ZP_15570779.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str. JET]
gi|409967194|gb|EKO35030.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str.
MOR084]
gi|410791910|gb|EKR89855.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str.
CBC379]
gi|410804463|gb|EKS10580.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str. JET]
gi|456876656|gb|EMF91735.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str. ST188]
Length = 586
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 131/211 (62%), Gaps = 17/211 (8%)
Query: 265 ETRKLLTADEEFELIAQIQD----LIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
E R + DE E+I I++ L R+E+E + +W + I R++
Sbjct: 293 EVRMGVNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIK------DWGEKIIKGEREI- 345
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
+ ++++L+ ANLRLVV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +
Sbjct: 346 ------SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYK 399
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 440
F++YA WW+RQ I +AI +RTIR+P ++ ++KV+ RL+IQE P+ E++A R
Sbjct: 400 FSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAER 459
Query: 441 VGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+G V+K++ + + R P+S++ PV +++D+
Sbjct: 460 LGWPVQKVKMVKNVAREPISLEIPVGSEEDS 490
>gi|222475070|ref|YP_002563485.1| RNA polymerase sigma factor [Anaplasma marginale str. Florida]
gi|255003048|ref|ZP_05278012.1| RNA polymerase sigma factor (rpoD) [Anaplasma marginale str. Puerto
Rico]
gi|255004170|ref|ZP_05278971.1| RNA polymerase sigma factor (rpoD) [Anaplasma marginale str.
Virginia]
gi|222419206|gb|ACM49229.1| RNA polymerase sigma factor (rpoD) [Anaplasma marginale str.
Florida]
Length = 646
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 103/156 (66%)
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
+ N +++++I ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF + G +F++
Sbjct: 404 RTANKAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFST 463
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGI 443
YA WWVRQ I +AI +RTIR+P ++ ++K+ R + E P E+L+ R+G+
Sbjct: 464 YATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEIGREPTLEELSTRLGM 523
Query: 444 TVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
VEK+ +++ I + P+S++ P+ D +TF D
Sbjct: 524 NVEKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIED 559
>gi|315444860|ref|YP_004077739.1| sigma-70 family RNA polymerase sigma factor [Mycobacterium gilvum
Spyr1]
gi|315263163|gb|ADT99904.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
Length = 319
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 130/227 (57%), Gaps = 15/227 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I+ + L +Q L+ K +G
Sbjct: 21 DLVRVYLNGIGKTALLTAADEVELAKRIE---------AGLYAQH-----LLATRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q
Sbjct: 127 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREAT 186
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E+LA GI VEK+ L+ +R P+S+ PV +D++ DA
Sbjct: 187 DEELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDA 233
>gi|390439227|ref|ZP_10227637.1| putative RNA polymerase sigma-C factor [Microcystis sp. T1-4]
gi|389837354|emb|CCI31761.1| putative RNA polymerase sigma-C factor [Microcystis sp. T1-4]
Length = 414
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 124/214 (57%), Gaps = 22/214 (10%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------- 328
AQ+Q ++L + + +L +Q P L WAK +S +LK+ L +G
Sbjct: 104 AQLQQFVKLMEVRDQLIAQLAHCPPLERWAKTAQISVPELKNALKAGKQRWAHLAGLEVG 163
Query: 329 -----------SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
++E++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++V+KF P
Sbjct: 164 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLEQAVKKFDPSK 223
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G RF++YAYWW+RQ + +AI SR IRLP +I L+K+ +A+R Q + E++
Sbjct: 224 GYRFSTYAYWWIRQGMTRAIATQSRLIRLPVHITEKLNKIKKAQRKISQMRGRTATVEEI 283
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
A+ + +T E++ L+ +S++ V ++DT
Sbjct: 284 AQELALTPEEVRELLMKVPRSVSLEIKVGKEKDT 317
>gi|384247274|gb|EIE20761.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coccomyxa subellipsoidea C-169]
Length = 329
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 111/203 (54%), Gaps = 1/203 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSGN 327
LLTA EE L +Q LI +E ++++ + GR T EWA G S + + G
Sbjct: 9 LLTAAEEKVLSKAVQRLIAMEAKQTEATQRLGRPITEREWAAECGQSSIHAFRKAVKVGQ 68
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+R +++ +N RLV HVA++Y RG+ DLL EG GL + VEKF G +F++YA+W
Sbjct: 69 EARTRMMKSNERLVFHVARRYMNRGLDFQDLLAEGMSGLWRGVEKFDADRGFKFSTYAHW 128
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
WVRQ I +AI + R +RLP +++ L++KV + Y E E LA VGI+ EK
Sbjct: 129 WVRQAITRAISEQGRVVRLPVHLHELMAKVTKVDLEYQSEHGRRAGNEKLAELVGISQEK 188
Query: 448 LERLIFITRMPLSMQQPVWADQD 470
L L + P S PV D
Sbjct: 189 LAMLSKVYMAPTSFNAPVGGSMD 211
>gi|378717650|ref|YP_005282539.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans VH2]
gi|375752353|gb|AFA73173.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans VH2]
Length = 339
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 135/247 (54%), Gaps = 15/247 (6%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
T ++R A ++ L D +R++L G LL A++E EL QI+
Sbjct: 21 TTSTRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE----------- 69
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
+ + L + RDL + + G ++R L+ ANLRLVV +AK+Y GRG+
Sbjct: 70 --AGLYAKHVLATRKRLSAAKKRDLNTVVREGEAARAHLLEANLRLVVSLAKRYTGRGMP 127
Query: 355 LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLL 414
L DL+QEG++GL++++EKF G +F++YA WW+RQ I + + SRTIRLP ++ +
Sbjct: 128 LLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQV 187
Query: 415 SKVLEAKR-LYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+K+ KR L+ Q G + D E LA GI EK+ L+ +R P+S+ PV +D++
Sbjct: 188 NKIARIKRELHQQLGREATDDE-LANESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAPL 246
Query: 474 QSTFLDA 480
DA
Sbjct: 247 GDFIEDA 253
>gi|40353297|gb|AAR84412.1| essential primary sigma 70 factor [Frankia sp. EaI-12]
Length = 409
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 139/234 (59%), Gaps = 12/234 (5%)
Query: 238 SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297
+R+ K++L+ ++P+R++L LLTA+E+ +L +I+
Sbjct: 93 ARRRREKEELALKAPTSEPVRMYLKEIGKVPLLTAEEQVDLAKRIE------------AG 140
Query: 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
F + + K RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ D
Sbjct: 141 LFASDKLAVATKKTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLD 200
Query: 358 LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKV 417
L+QEG++GL+++VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K+
Sbjct: 201 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKL 260
Query: 418 LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+ +R +Q+ P E++A+ + +T +K+ ++ +++ P+S++ P+ ++D+
Sbjct: 261 IRIQRQLLQDLGREPSPEEIAKEMDLTPDKVREILKVSQEPVSLETPIGEEEDS 314
>gi|256545301|ref|ZP_05472665.1| RNA polymerase sigma factor RpoD [Anaerococcus vaginalis ATCC
51170]
gi|256398982|gb|EEU12595.1| RNA polymerase sigma factor RpoD [Anaerococcus vaginalis ATCC
51170]
Length = 614
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 104/153 (67%)
Query: 319 LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 378
L + N +++KL NLRLVV +AK+Y GRG+S DL+QEG+MGLMK+V+K+ G
Sbjct: 368 LNRAIFDANRAKQKLAETNLRLVVSIAKKYVGRGMSFLDLIQEGNMGLMKAVDKYDYNRG 427
Query: 379 CRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLA 438
+F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+ P E++A
Sbjct: 428 FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLVQDLGRDPSNEEIA 487
Query: 439 RRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
++GI VEK++ + I + P+S++ P+ ++D+
Sbjct: 488 EQMGIEVEKVQEIRKIAQEPVSLETPIGEEEDS 520
>gi|313144578|ref|ZP_07806771.1| RNA polymerase sigma factor RpoD [Helicobacter cinaedi CCUG 18818]
gi|386761163|ref|YP_006234798.1| RNA polymerase sigma factor RpoD [Helicobacter cinaedi PAGU611]
gi|313129609|gb|EFR47226.1| RNA polymerase sigma factor RpoD [Helicobacter cinaedi CCUG 18818]
gi|385146179|dbj|BAM11687.1| RNA polymerase sigma factor RpoD [Helicobacter cinaedi PAGU611]
gi|396078278|dbj|BAM31654.1| RNA polymerase sigma factor [Helicobacter cinaedi ATCC BAA-847]
Length = 623
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 382 DKAKAKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGFKFSTYAT 441
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW+RQ I +AI +RTIR+P ++ ++++ + R +IQE PD E +A+ VG+ ++
Sbjct: 442 WWIRQAISRAIADQARTIRIPIHMIETINRIHKIMRKHIQETGKEPDIEYIAKEVGLPID 501
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I IT+ P+S+ P+ +D D F
Sbjct: 502 KVKNVIKITKEPVSLDAPIGSDDDGKF 528
>gi|337285410|ref|YP_004624883.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermodesulfatator
indicus DSM 15286]
gi|335358238|gb|AEH43919.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Thermodesulfatator indicus DSM 15286]
Length = 560
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 107/163 (65%)
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
AK + RDL+ L ++++L+ ANLRLVV +AK+Y GRG+ DL+QEG++GLMK
Sbjct: 301 AKKLQSVARDLEHSLEKIRKAKDELVKANLRLVVSIAKKYTGRGLQFLDLIQEGNIGLMK 360
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ A QE
Sbjct: 361 AVEKFDYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLVRASLQIYQET 420
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E +A R+ + VEK+ +++ I + P+S++ P+ D+D+
Sbjct: 421 GQEATPEQIAERLELPVEKVRKILKIAKEPISLETPIGEDEDS 463
>gi|297736323|emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 122/216 (56%)
Query: 262 WGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKS 321
+G +LT EE E +++ LE + ++ EPT +WA+A+G+ L
Sbjct: 15 FGAARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDK 74
Query: 322 ELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRF 381
L +G SRE++ + RLVV +A +YQG+G+SL DL+QEGS+GL++ E+F P G +
Sbjct: 75 MLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKL 134
Query: 382 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRV 441
++Y YWW+RQ I +AI SR IRLP +I +++K+ EA+ + + P +++A +
Sbjct: 135 STYVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFI 194
Query: 442 GITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTF 477
+ V + + +R P+S+ Q V + T Q
Sbjct: 195 DVNVSTVRLVSERSRTPISVDQAVTSQGCMTLQEII 230
>gi|291522892|emb|CBK81185.1| RNA polymerase, sigma 70 subunit, RpoD [Coprococcus catus GD/7]
Length = 366
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 99/145 (68%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+++++I ANLRLVV +AK+Y GRGI DL+QEG+MGL+K+VEKF G +F++YA WW
Sbjct: 128 AKDRIIEANLRLVVSIAKKYVGRGIPFLDLIQEGNMGLIKAVEKFDYAKGFKFSTYATWW 187
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ+I + I +TIR+P ++ ++K L R +QE P E++A R+G T +K+
Sbjct: 188 IRQSITRGIADKGKTIRVPVHMVETINKTLRMSRNLLQELGREPTSEEIAERLGTTKQKV 247
Query: 449 ERLIFITRMPLSMQQPVWADQDTTF 473
E + I+R P+SM P+ ++D++
Sbjct: 248 EEALEISRDPVSMDSPIGEEEDSSL 272
>gi|154148465|ref|YP_001406295.1| RNA polymerase sigma factor RpoD [Campylobacter hominis ATCC
BAA-381]
gi|153804474|gb|ABS51481.1| RNA polymerase sigma factor RpoD (Sigma-A) (Major vegetative
sigmafactor) [Campylobacter hominis ATCC BAA-381]
Length = 624
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 103/147 (70%), Gaps = 1/147 (0%)
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395
+NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA WW+RQ I +
Sbjct: 392 SNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYRKGYKFSTYATWWIRQAISR 451
Query: 396 AIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455
AI +RTIR+P ++ ++++ + R Y+QE PD LA+ VG++++K++++I IT
Sbjct: 452 AIADQARTIRIPIHMIETINRINKINRKYVQENGKEPDITILAKEVGLSIDKIKQVIKIT 511
Query: 456 RMPLSMQQPVWADQDTTFQSTFLDAAG 482
+ P+S++ PV + D F F++ G
Sbjct: 512 KEPISLEAPVGNEDDGKF-GDFVEDKG 537
>gi|424820434|ref|ZP_18245472.1| RNA polymerase sigma factor RpoD [Campylobacter fetus subsp.
venerealis NCTC 10354]
gi|342327213|gb|EGU23697.1| RNA polymerase sigma factor RpoD [Campylobacter fetus subsp.
venerealis NCTC 10354]
Length = 623
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 119/184 (64%), Gaps = 8/184 (4%)
Query: 290 KEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQ 349
KE SK + F EP K + + +K + + ++ ++ +NLRLVV +AK+Y
Sbjct: 352 KEASK--TGFNLEP------KELKIVLDQIKRGKNISDDAKARMAKSNLRLVVSIAKRYT 403
Query: 350 GRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPEN 409
RG+ DL+QEG++GLMK+V+KF+ + G +F++YA WW+RQ I +AI +RTIR+P +
Sbjct: 404 NRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQAISRAIADQARTIRIPIH 463
Query: 410 IYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQ 469
+ ++++ + R Y+QE PD +AR VG++++K++++I IT+ P+S++ P+ ++
Sbjct: 464 MIETINRINKINRKYLQEEGKEPDVSIIAREVGLSIDKVKQVIKITKEPISLEAPIGSED 523
Query: 470 DTTF 473
D +
Sbjct: 524 DGKY 527
>gi|254457867|ref|ZP_05071294.1| sigma 28 [Sulfurimonas gotlandica GD1]
gi|373868949|ref|ZP_09605347.1| RNA polymerase sigma factor rpoD (Sigma-70) [Sulfurimonas
gotlandica GD1]
gi|207085260|gb|EDZ62545.1| sigma 28 [Sulfurimonas gotlandica GD1]
gi|372471050|gb|EHP31254.1| RNA polymerase sigma factor rpoD (Sigma-70) [Sulfurimonas
gotlandica GD1]
Length = 623
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 102/145 (70%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
S+ K+ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G +F++YA WW
Sbjct: 384 SKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWW 443
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIR+P ++ ++++ + R ++QE PD E +A VG++VEK+
Sbjct: 444 IRQAISRAIADQARTIRIPIHMIETINRINKIMRKHLQEHGKEPDVEVIALEVGLSVEKV 503
Query: 449 ERLIFITRMPLSMQQPVWADQDTTF 473
+ +I IT+ P+S++ P+ + D F
Sbjct: 504 KNVIKITKEPISLEAPIGNEDDGRF 528
>gi|410450654|ref|ZP_11304688.1| RNA polymerase sigma factor RpoD [Leptospira sp. Fiocruz LV3954]
gi|410015532|gb|EKO77630.1| RNA polymerase sigma factor RpoD [Leptospira sp. Fiocruz LV3954]
Length = 579
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 131/211 (62%), Gaps = 17/211 (8%)
Query: 265 ETRKLLTADEEFELIAQIQD----LIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
E R + DE E+I I++ L R+E+E + +W + I R++
Sbjct: 286 EVRMGVNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIK------DWGEKIIKGEREI- 338
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
+ ++++L+ ANLRLVV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +
Sbjct: 339 ------SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYK 392
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 440
F++YA WW+RQ I +AI +RTIR+P ++ ++KV+ RL+IQE P+ E++A R
Sbjct: 393 FSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAER 452
Query: 441 VGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+G V+K++ + + R P+S++ PV +++D+
Sbjct: 453 LGWPVQKVKMVKNVAREPISLEIPVGSEEDS 483
>gi|425445125|ref|ZP_18825161.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
gi|389734954|emb|CCI01463.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
Length = 435
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 123/214 (57%), Gaps = 22/214 (10%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------- 328
AQ+Q ++L + +L ++ P+L WAK ++ +LK+ L +G
Sbjct: 125 AQVQQFVKLIAVRDQLTARSAHRPSLERWAKTAQITVSELKNALKAGKQRWAHLAGLEVG 184
Query: 329 -----------SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
++E++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P
Sbjct: 185 ELEEIIALGTHAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTK 244
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G RF++YAYWW+RQ + +AI SR IRLP +I L+K+ +A+R Q + E++
Sbjct: 245 GYRFSTYAYWWIRQGMTRAIATQSRMIRLPVHITEKLNKIKKAQRKISQIRGRTATVEEI 304
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
A+ + +T E + ++ +S++ V ++DT
Sbjct: 305 AQELALTPEAVREVLMTVPRSVSLEIKVGKEKDT 338
>gi|87123422|ref|ZP_01079273.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9917]
gi|86169142|gb|EAQ70398.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9917]
Length = 376
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 142/271 (52%), Gaps = 46/271 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ---DLIRLEKEKSKLQ-------------- 296
ND LRL+L LL+ +EE L Q+Q L+R E+E ++
Sbjct: 19 NDLLRLYLQDIGRVNLLSNEEEVLLARQVQRREQLLRQERELAEAHPVLRRLLELEELQQ 78
Query: 297 ---SQFGREPTLIEWAKAIGLSCRDL----------------------KSELHSGNSSRE 331
+ PT EWA+A G+S +L K++L G +R+
Sbjct: 79 REANHHCHWPTRQEWARAAGMSVAELQTILNEGYGTWSRLIELEPCTLKAQLRDGRRARD 138
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+RQ
Sbjct: 139 RMIAANLRLVVTVAKKYQQRGLELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQ 198
Query: 392 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451
I +AI SRTIRLP ++ L+++ ++ + DLA+++G++ E +
Sbjct: 199 GITRAIATQSRTIRLPVHVTEKLNRIKRVQQEIASQEGRIATLTDLAQKLGLSEETVR-- 256
Query: 452 IFITRMP--LSMQQPVWADQDTTFQSTFLDA 480
+ + R+P +S++ V +QDT D
Sbjct: 257 LTLMRVPRSVSLELRVGKEQDTQLGDLLEDG 287
>gi|359767854|ref|ZP_09271636.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans NBRC
16320]
gi|359314770|dbj|GAB24469.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans NBRC
16320]
Length = 339
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 135/247 (54%), Gaps = 15/247 (6%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
T ++R A ++ L D +R++L G LL A++E EL QI+
Sbjct: 21 TTSTRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE----------- 69
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
+ + L + RDL + + G ++R L+ ANLRLVV +AK+Y GRG+
Sbjct: 70 --AGLYAKHVLATRKRLSAAKKRDLNTVVREGEAARAHLLEANLRLVVSLAKRYTGRGMP 127
Query: 355 LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLL 414
L DL+QEG++GL++++EKF G +F++YA WW+RQ I + + SRTIRLP ++ +
Sbjct: 128 LLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQV 187
Query: 415 SKVLEAKR-LYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+K+ KR L+ Q G + D E LA GI EK+ L+ +R P+S+ PV +D++
Sbjct: 188 NKIARIKRELHQQLGREATDDE-LANESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAPL 246
Query: 474 QSTFLDA 480
DA
Sbjct: 247 GDFIEDA 253
>gi|262038195|ref|ZP_06011589.1| RNA polymerase sigma factor RpoD [Leptotrichia goodfellowii F0264]
gi|261747776|gb|EEY35221.1| RNA polymerase sigma factor RpoD [Leptotrichia goodfellowii F0264]
Length = 393
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 119/176 (67%), Gaps = 5/176 (2%)
Query: 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
+ G+ P L+ + + I + R LK + +++KLI +NLRLVV +AK++ RG+ + D
Sbjct: 130 EIGQIP-LLSYEEEIDYAQRVLKGD----EEAKQKLIESNLRLVVSIAKKHTNRGLKMLD 184
Query: 358 LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKV 417
L+QEG+MGLMK+VEKF+ + G +F++YA WW+RQ I +AI RTIR+P ++ ++K+
Sbjct: 185 LIQEGNMGLMKAVEKFEYEKGFKFSTYATWWIRQAITRAIADQGRTIRIPVHMIETINKI 244
Query: 418 LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+ R+ +QE P E+L++++ I V+K++ ++ + + P+S++ PV +++D+
Sbjct: 245 KKESRIILQETGKEPTAEELSKKLEIPVDKVKNILEMNQDPISLETPVGSEEDSEL 300
>gi|118475308|ref|YP_891711.1| RNA polymerase sigma factor RpoD [Campylobacter fetus subsp. fetus
82-40]
gi|118414534|gb|ABK82954.1| RNA polymerase sigma factor [Campylobacter fetus subsp. fetus
82-40]
Length = 623
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 119/184 (64%), Gaps = 8/184 (4%)
Query: 290 KEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQ 349
KE SK + F EP K + + +K + + ++ ++ +NLRLVV +AK+Y
Sbjct: 352 KEASK--TGFNLEP------KELKIVLDQIKRGKNISDDAKARMAKSNLRLVVSIAKRYT 403
Query: 350 GRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPEN 409
RG+ DL+QEG++GLMK+V+KF+ + G +F++YA WW+RQ I +AI +RTIR+P +
Sbjct: 404 NRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQAISRAIADQARTIRIPIH 463
Query: 410 IYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQ 469
+ ++++ + R Y+QE PD +AR VG++++K++++I IT+ P+S++ P+ ++
Sbjct: 464 MIETINRINKINRKYLQEEGKEPDVSIIAREVGLSIDKVKQVIKITKEPISLEAPIGSED 523
Query: 470 DTTF 473
D +
Sbjct: 524 DGKY 527
>gi|157164653|ref|YP_001467098.1| RNA polymerase sigma factor RpoD [Campylobacter concisus 13826]
gi|112799942|gb|EAT97286.1| RNA polymerase sigma factor RpoD (Sigma-A) (Major vegetative
sigmafactor) [Campylobacter concisus 13826]
Length = 617
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 105/147 (71%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ ++ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 376 DEAKARMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYRKGYKFSTYAT 435
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW+RQ I +AI +RTIR+P ++ ++++ + R Y+QE PD +A+ VG++V+
Sbjct: 436 WWIRQAISRAIADQARTIRIPIHMIETINRINKINRKYLQEEGKEPDVSVIAKEVGLSVD 495
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++++I IT+ P+S++ P+ ++D F
Sbjct: 496 KVKQVIKITKEPISLEAPIANEEDGKF 522
>gi|225874024|ref|YP_002755483.1| RNA polymerase sigma factor rpoD [Acidobacterium capsulatum ATCC
51196]
gi|83356350|gb|ABC16653.1| major sigma factor RpoD [Acidobacterium capsulatum]
gi|225793569|gb|ACO33659.1| RNA polymerase sigma factor rpoD [Acidobacterium capsulatum ATCC
51196]
Length = 597
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 111/166 (66%), Gaps = 7/166 (4%)
Query: 313 GLSCRDLKS---ELHSGN----SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365
GLS DLK E+ G+ ++ +LI ANLRLVV +AK+Y RG+ DL+QEG++G
Sbjct: 332 GLSIADLKRTQREIIQGDMDAEQAKRELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIG 391
Query: 366 LMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYI 425
LMK+V+KF+ + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +
Sbjct: 392 LMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLV 451
Query: 426 QEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
QE P E++ARR+ I V K+ +++ I + P+S++ P+ ++D+
Sbjct: 452 QELGREPTSEEIARRMDIPVAKVRKVLKIAQEPISLETPIGEEEDS 497
>gi|300813859|ref|ZP_07094164.1| RNA polymerase sigma factor RpoD [Peptoniphilus sp. oral taxon 836
str. F0141]
gi|300512046|gb|EFK39241.1| RNA polymerase sigma factor RpoD [Peptoniphilus sp. oral taxon 836
str. F0141]
Length = 361
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 123/222 (55%), Gaps = 40/222 (18%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G +DP+R++L LLT DEE E+ +++
Sbjct: 85 GISVDDPVRMYLKEIGKIPLLTGDEEVEIAKRME-------------------------- 118
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ NS++++L ANLRLVV +AK+Y GRG+S DL+QEG++GLMK+
Sbjct: 119 --------------NGDNSAKKELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNLGLMKA 164
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
V+KF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +QE
Sbjct: 165 VDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLVQELG 224
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
P E++A+ + I VEK+ + I + P+S++ P+ ++D+
Sbjct: 225 RDPLPEEIAKEMSIDVEKVREIQKIAQEPVSLETPIGEEEDS 266
>gi|442804827|ref|YP_007372976.1| RNA polymerase sigma factor RpoD [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740677|gb|AGC68366.1| RNA polymerase sigma factor RpoD [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 443
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 40/225 (17%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG +DP+R++L LLTA+EE EL +++ G E
Sbjct: 164 LPEGVAIDDPVRMYLKEIGKIPLLTAEEEIELAKRME---------------AGEE---- 204
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
+++L ANLRLVV +AK+Y GRG+ DL+QEG++GL
Sbjct: 205 ---------------------EPKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 243
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
+K+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +Q
Sbjct: 244 IKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQ 303
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E P E++A+ +G++VEK+ ++ I++ P+S++ P+ ++D+
Sbjct: 304 ELGREPTPEEIAQEMGMSVEKVREIMKISQEPVSLETPIGEEEDS 348
>gi|256396128|ref|YP_003117692.1| RpoD subfamily RNA polymerase sigma-70 subunit [Catenulispora
acidiphila DSM 44928]
gi|256362354|gb|ACU75851.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Catenulispora
acidiphila DSM 44928]
Length = 390
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 108/164 (65%)
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQ 376
R+L + G +++ +LI ANLRLVV +AK+Y GRG+S+ DL+QEG++GL+++VEKF
Sbjct: 141 RELAILVLEGQAAKRRLIEANLRLVVSIAKRYLGRGMSILDLVQEGNLGLIRAVEKFDYT 200
Query: 377 AGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKED 436
G +F++YA WW+RQ + +A+ +RTIR+P ++ L+++V+ +R +QE P +D
Sbjct: 201 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELMNRVVRLQRRLLQENGVEPTPDD 260
Query: 437 LARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
+A +G+ VE++ ++ + + P+S+ PV + D DA
Sbjct: 261 IAEVLGVAVERVVEVLRLAQEPVSLHAPVGEEDDVALGDLIEDA 304
>gi|120553862|ref|YP_958213.1| RpoD family RNA polymerase sigma factor [Marinobacter aquaeolei
VT8]
gi|387814767|ref|YP_005430254.1| RNA polymerase, sigma S (sigma 38) factor [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|120323711|gb|ABM18026.1| RNA polymerase, sigma 38 subunit, RpoS [Marinobacter aquaeolei VT8]
gi|381339784|emb|CCG95831.1| RNA polymerase, sigma S (sigma 38) factor [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 332
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 101/152 (66%)
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
S R+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF++YA W
Sbjct: 92 SGRKRMIESNLRLVVKIARRYVNRGLTLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 151
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQTI +AI +RTIRLP ++ L+ L A R Q+ +H P E++AR V V+
Sbjct: 152 WIRQTIERAIMNQTRTIRLPIHVVKELNLYLRAARELTQKLDHEPTAEEIARMVDKPVDD 211
Query: 448 LERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++R++ + SM P+ A D + T D
Sbjct: 212 VKRMLGLNERVASMDTPIGAGSDKSLMDTVAD 243
>gi|260890619|ref|ZP_05901882.1| RNA polymerase sigma factor RpoD [Leptotrichia hofstadii F0254]
gi|260859664|gb|EEX74164.1| RNA polymerase sigma factor RpoD [Leptotrichia hofstadii F0254]
Length = 392
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 117/174 (67%), Gaps = 5/174 (2%)
Query: 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
+ G+ P L+ + + I + R L E +++KLI +NLRLVV +AK++ RG+ + D
Sbjct: 129 EIGQIP-LLSYEEEIDYAQRVLNGE----EEAKQKLIESNLRLVVSIAKKHTNRGLKMLD 183
Query: 358 LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKV 417
L+QEG+MGLMK+VEKF+ + G +F++YA WW+RQ I +AI RTIR+P ++ ++K+
Sbjct: 184 LIQEGNMGLMKAVEKFEYEKGFKFSTYATWWIRQAITRAIADQGRTIRIPVHMIETINKI 243
Query: 418 LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+ R+ +QE P E+LA ++ + VEK++ ++ + + P+S++ PV +++D+
Sbjct: 244 KKESRIILQETGKEPTAEELAEKLELPVEKVKSILEMNQDPISLETPVGSEEDS 297
>gi|428301525|ref|YP_007139831.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428238069|gb|AFZ03859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 387
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 113/175 (64%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ADEE EL +++ L + ++ L+ + G +P+ E A L+ R L++ L+ G
Sbjct: 89 LLKADEEVELARRVRFLEEWREAQAALKEKSGNQPSKAEVAAEFSLTERQLENRLYQGRV 148
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 149 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRASEKFDPDKGYKFSTYAYWW 208
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGI 443
+RQ I +AI +RTIRLP +I L+K+ +A+R Q+ +P + +LA + I
Sbjct: 209 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQQLGRNPSEIELAESLEI 263
>gi|428203439|ref|YP_007082028.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427980871|gb|AFY78471.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 407
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 133/261 (50%), Gaps = 43/261 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------- 294
D +RL+L LL +EE Q+Q ++L ++K
Sbjct: 50 TDLVRLYLQDIGRVPLLGKEEEVAKAQQVQRYVQLINLRTKAAKNGNAAIARFVEIVDTH 109
Query: 295 --LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------------------SR 330
L SQ G P+L WA A+ ++ +LK L G ++
Sbjct: 110 DRLVSQLGLRPSLERWAAAVKMNVFELKQALTEGKRHWAEIAGMDVQELDRIQKAGIRAK 169
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 170 EHMIEANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 229
Query: 391 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450
Q I +AI SR IRLP +I L+K+ + +R QE E++A+++ +T ++
Sbjct: 230 QGITRAIATQSRIIRLPVHITEKLNKIKKVQRQITQEKGRPATAEEIAKQLEMTSGQVRD 289
Query: 451 LIFITRMPLSMQQPVWADQDT 471
++ +S++ V D+DT
Sbjct: 290 MLMRVPRSVSLEVKVGKDKDT 310
>gi|269958878|ref|YP_003328667.1| RNA polymerase sigma factor [Anaplasma centrale str. Israel]
gi|269848709|gb|ACZ49353.1| RNA polymerase sigma factor [Anaplasma centrale str. Israel]
Length = 649
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 103/155 (66%)
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384
+ N +++++I ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF + G +F++Y
Sbjct: 408 TANKAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTY 467
Query: 385 AYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGIT 444
A WWVRQ I +AI +RTIR+P ++ ++K+ R + E P E+L+ R+G+
Sbjct: 468 ATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEIGREPTLEELSARLGMN 527
Query: 445 VEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
VEK+ +++ I + P+S++ P+ D +TF D
Sbjct: 528 VEKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIED 562
>gi|404494349|ref|YP_006718455.1| RNA polymerase sigma-70 factor RpoD [Pelobacter carbinolicus DSM
2380]
gi|77546352|gb|ABA89914.1| RNA polymerase sigma-70 factor RpoD [Pelobacter carbinolicus DSM
2380]
Length = 588
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 136/223 (60%), Gaps = 9/223 (4%)
Query: 267 RKLLTADEEFELIAQ-----IQDLIRLEKEKSKLQSQFGREPTLIEWA--KAIGLSCRDL 319
R++ +DEE I+Q I L+ +EK Q +F R +A + +G +
Sbjct: 281 RRMRKSDEEAHRISQDLGVPIDTLLSVEKRLKSAQRKFNRVEDESGFAPEELLGSLKEVM 340
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
K E + +++ +L+ ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G
Sbjct: 341 KGEWRA-KAAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGY 399
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLAR 439
+F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A
Sbjct: 400 KFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQEMGREPVPEEIAE 459
Query: 440 RVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
R+ + +EK+ R++ I + P+S++ P+ ++D++ F++ G
Sbjct: 460 RMELPLEKVRRVLKIAKEPISLETPIGEEEDSSL-GDFIEDKG 501
>gi|168036108|ref|XP_001770550.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
gi|14669828|dbj|BAB62006.1| PpSIG1 [Physcomitrella patens]
gi|14669830|dbj|BAB62007.1| PpSIG1 [Physcomitrella patens]
gi|162678258|gb|EDQ64719.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
Length = 677
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 122/197 (61%), Gaps = 1/197 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT EE L +++ + L +E+ KL ++ G P+ EWA + LS DL +L
Sbjct: 369 LLTKQEEVFLSKKLRIGLNLLEERKKLAAELGYVPSNEEWAPHMNLSVGDLVRKLGEAEW 428
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+R+K++ ANLRLVV VAKQY G+ + DL+QEGS+GL++ VEKF G + ++Y +WW
Sbjct: 429 ARDKMVMANLRLVVSVAKQYHSFGLEMADLIQEGSIGLLRGVEKFDHTRGYKLSTYVHWW 488
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ + +AI HSRT+RLP +++ L ++ +AK + EG + +E ++ +T K+
Sbjct: 489 IRQGVTRAIADHSRTVRLPVHVHDTLGRIRKAKSTLLSEGCTASVQE-ISEATNLTGTKI 547
Query: 449 ERLIFITRMPLSMQQPV 465
+ + +T+ +S+ + +
Sbjct: 548 KNTLQVTKKLVSLDKEI 564
>gi|282882556|ref|ZP_06291177.1| RNA polymerase sigma factor RpoD [Peptoniphilus lacrimalis 315-B]
gi|281297698|gb|EFA90173.1| RNA polymerase sigma factor RpoD [Peptoniphilus lacrimalis 315-B]
Length = 361
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 123/222 (55%), Gaps = 40/222 (18%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G +DP+R++L LLT DEE E+ +++
Sbjct: 85 GISVDDPVRMYLKEIGKIPLLTGDEEVEIAKRME-------------------------- 118
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ NS++++L ANLRLVV +AK+Y GRG+S DL+QEG++GLMK+
Sbjct: 119 --------------NGDNSAKKELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNLGLMKA 164
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
V+KF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +QE
Sbjct: 165 VDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLVQELG 224
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
P E++A+ + I VEK+ + I + P+S++ P+ ++D+
Sbjct: 225 RDPLPEEIAKEMNIEVEKVREIQKIAQEPVSLETPIGEEEDS 266
>gi|302851352|ref|XP_002957200.1| hypothetical protein VOLCADRAFT_109400 [Volvox carteri f.
nagariensis]
gi|300257450|gb|EFJ41698.1| hypothetical protein VOLCADRAFT_109400 [Volvox carteri f.
nagariensis]
Length = 733
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 117/226 (51%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
ND FL +L+ + E E+ QD + LEK K + + R+PT E A A+G
Sbjct: 399 NDGTDHFLHSSANVNILSPEAELEVTEMCQDFLFLEKVKRQCEKTLHRKPTNDECAAAVG 458
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ +G ++E L+ +N RLV+ V K+Y G+G+ L DL+ EG GL++ VE +
Sbjct: 459 MDVMAYNMRYDAGLKAKELLLKSNYRLVMTVCKRYIGKGMHLQDLVSEGVKGLLRGVEMY 518
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G RF +YA+WW+RQ + +++ + R +RLP ++ L+K+ A E N P
Sbjct: 519 DASRGFRFGTYAHWWIRQAVSRSMAETGRAVRLPVHMIEQLTKLKNATAALAMELNREPS 578
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
E++A VG+ ++E L+ R SM+ + D T + D
Sbjct: 579 VEEMAEAVGLPPSRVELLLDAARAASSMESAIGGDDGLTIKDAVQD 624
>gi|312196071|ref|YP_004016132.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311227407|gb|ADP80262.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 393
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 148/251 (58%), Gaps = 17/251 (6%)
Query: 224 KVSKPQVTNHETYN--SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQ 281
+V P+ + ET + +R+ ++ L+ +DP+R++L LLTA EE +L +
Sbjct: 62 EVLDPRADSAETSDLLARRRREEEALNAKAPTSDPVRMYLKEIGKVPLLTAAEEVDLAKR 121
Query: 282 IQ-DLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRL 340
I+ L EK GR T + L DL++ G+ ++ KL+ ANLRL
Sbjct: 122 IEAGLFAAEKLGG------GRRLT-------VALRV-DLEAVARDGDVAKRKLVEANLRL 167
Query: 341 VVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQH 400
VV +AK+Y GRG+ DL+QEG++GL+++VEKF G +F++YA WW+RQ I +AI
Sbjct: 168 VVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAIADQ 227
Query: 401 SRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLS 460
+RTIR+P ++ ++K++ +R +Q+ P E++A+ + +T +K+ ++ + + P+S
Sbjct: 228 ARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIAKEMDLTPDKVREILKVAQEPVS 287
Query: 461 MQQPVWADQDT 471
++ P+ ++D+
Sbjct: 288 LETPIGEEEDS 298
>gi|257126628|ref|YP_003164742.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptotrichia
buccalis C-1013-b]
gi|257050567|gb|ACV39751.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptotrichia
buccalis C-1013-b]
Length = 392
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 117/174 (67%), Gaps = 5/174 (2%)
Query: 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
+ G+ P L+ + + I + R L E +++KLI +NLRLVV +AK++ RG+ + D
Sbjct: 129 EIGQIP-LLSYEEEIDYAQRVLDGE----EEAKQKLIESNLRLVVSIAKKHTNRGLKMLD 183
Query: 358 LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKV 417
L+QEG+MGLMK+VEKF+ + G +F++YA WW+RQ I +AI RTIR+P ++ ++K+
Sbjct: 184 LIQEGNMGLMKAVEKFEYEKGFKFSTYATWWIRQAITRAIADQGRTIRIPVHMIETINKI 243
Query: 418 LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+ R+ +QE P E+LA ++ + VEK++ ++ + + P+S++ PV +++D+
Sbjct: 244 KKESRIILQETGKEPTAEELAEKLELPVEKVKSILEMNQDPISLETPVGSEEDS 297
>gi|449131100|ref|ZP_21767317.1| RNA polymerase sigma factor RpoD [Treponema denticola SP37]
gi|448940446|gb|EMB21352.1| RNA polymerase sigma factor RpoD [Treponema denticola SP37]
Length = 619
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 134/216 (62%), Gaps = 17/216 (7%)
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG--- 326
++A+E ++ QIQ L R + K++ F E T+ E DL SE+ SG
Sbjct: 331 ISANEVKDIYTQIQVLTR---KIRKIEYDF--EATVDEVI--------DLTSEIKSGQRM 377
Query: 327 -NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
++++KLINANLRLVV +AK+Y RG+ DL+QEG++GL+K+VEKF+ + G +F++YA
Sbjct: 378 LKNAKDKLINANLRLVVSIAKKYINRGLQFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYA 437
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
WW+RQ I ++I +RTIR+P ++ ++KV R +Q+ P+ +++A ++G ++
Sbjct: 438 TWWIRQAITRSISDQARTIRVPVHMIEQINKVNRESRQLMQKLGREPNDDEIALQLGWSI 497
Query: 446 EKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
EK++++ + R P+S++ P+ ++DT D
Sbjct: 498 EKVKQVKNVAREPISLETPIGEEEDTLLGDLIEDKG 533
>gi|291566491|dbj|BAI88763.1| group 2 RNA polymerase sigma factor SigC [Arthrospira platensis
NIES-39]
Length = 385
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 107/166 (64%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA+ LS +LK G +++ +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 125 WAELANLSVEELKQVQREGIQAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 184
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 427
++VEKF P G RF++Y+YWW+RQ I +AI SRTIRLP +I L+K+ +A+R QE
Sbjct: 185 RAVEKFDPTRGYRFSTYSYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQE 244
Query: 428 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+ + +D+A + +T +++ ++ +S++ V D+DT
Sbjct: 245 KSRTATIDDIATELKMTPDQIREVLLRVPRSVSLETKVGTDKDTEL 290
>gi|289578734|ref|YP_003477361.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermoanaerobacter
italicus Ab9]
gi|289528447|gb|ADD02799.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Thermoanaerobacter italicus Ab9]
Length = 357
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 127/239 (53%), Gaps = 40/239 (16%)
Query: 233 HETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
E N + L EG +DP+R++L LLT +EE EL +I+
Sbjct: 64 QEEINEEDLDLDLSLPEGISIDDPVRMYLKEIGKIPLLTPEEEIELAKRIE--------- 114
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
++++LI ANLRLVV +AK+Y GRG
Sbjct: 115 -------------------------------QGDEEAKKRLIEANLRLVVSIAKRYVGRG 143
Query: 353 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYT 412
+ DL+QEG++GL+K+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++
Sbjct: 144 MLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVE 203
Query: 413 LLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
++K++ +R +QE P E+LA+ +G+ EK+ ++ I + P+S++ P+ ++D+
Sbjct: 204 TINKLIRIQRQLLQELGREPTPEELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDS 262
>gi|335045942|ref|ZP_08538965.1| RNA polymerase sigma factor RpoD [Oribacterium sp. oral taxon 108
str. F0425]
gi|363897360|ref|ZP_09323899.1| hypothetical protein HMPREF9624_00461 [Oribacterium sp. ACB7]
gi|333759728|gb|EGL37285.1| RNA polymerase sigma factor RpoD [Oribacterium sp. oral taxon 108
str. F0425]
gi|361958857|gb|EHL12154.1| hypothetical protein HMPREF9624_00461 [Oribacterium sp. ACB7]
Length = 385
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 128/234 (54%), Gaps = 40/234 (17%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG DP+R++L T LLTA+EE+ L ++ Q G E
Sbjct: 106 LLEGIGTEDPVRMYLKEIGTVPLLTAEEEYSL---------------AMKKQAGDE---- 146
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
+AK ++LI ANLRLVV +AK+Y GRG+S DL+QEG++GL
Sbjct: 147 -YAK--------------------QRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGL 185
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
+K VEKF P+ G + ++YA WW+RQ++ +A+ +RTIR+P ++ ++K+ + +R
Sbjct: 186 IKGVEKFDPEKGFKLSTYATWWIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTL 245
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E + P ++LA + +T EK++ ++ I R P S++ P+ + D+ DA
Sbjct: 246 ELGYEPSVKELAEHLDMTEEKVQEIMQIAREPASLETPIGEEDDSNLGDFVADA 299
>gi|152993293|ref|YP_001359014.1| RNA polymerase sigma factor RpoD [Sulfurovum sp. NBC37-1]
gi|151425154|dbj|BAF72657.1| RNA polymerase sigma 70 factor [Sulfurovum sp. NBC37-1]
Length = 612
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 103/145 (71%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ ++ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA WW
Sbjct: 373 AKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYEKGYKFSTYATWW 432
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIR+P ++ ++++ + R ++QE PD E +A+ VG+TV+K+
Sbjct: 433 IRQAISRAIADQARTIRIPIHMIETINRINKIIRKHLQETGKEPDLETIAKEVGLTVDKV 492
Query: 449 ERLIFITRMPLSMQQPVWADQDTTF 473
+ +I IT+ P+S++ PV + D F
Sbjct: 493 KNVIKITKEPVSLETPVGDEDDGRF 517
>gi|404446700|ref|ZP_11011803.1| RNA polymerase sigma factor SigB [Mycobacterium vaccae ATCC 25954]
gi|403650063|gb|EJZ05350.1| RNA polymerase sigma factor SigB [Mycobacterium vaccae ATCC 25954]
Length = 319
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 130/227 (57%), Gaps = 15/227 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L++ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLDTRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q
Sbjct: 127 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREAT 186
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E+LA GI VEK+ L+ +R P+S+ PV +D++ DA
Sbjct: 187 DEELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDA 233
>gi|118472772|ref|YP_887083.1| RNA polymerase sigma factor SigB [Mycobacterium smegmatis str. MC2
155]
gi|399987098|ref|YP_006567447.1| RNA polymerase sigma factor sigB [Mycobacterium smegmatis str. MC2
155]
gi|441207679|ref|ZP_20973619.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
gi|118174059|gb|ABK74955.1| sigma factor SigB [Mycobacterium smegmatis str. MC2 155]
gi|399231659|gb|AFP39152.1| RNA polymerase sigma factor sigB [Mycobacterium smegmatis str. MC2
155]
gi|440627862|gb|ELQ89667.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
Length = 319
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 128/217 (58%), Gaps = 15/217 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L++ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLDTKKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL++ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 ARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q
Sbjct: 127 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREAT 186
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
E+LA GI VEK+ L+ +R P+S+ PV D++
Sbjct: 187 DEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEE 223
>gi|417003308|ref|ZP_11942379.1| RNA polymerase sigma factor RpoD [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325478784|gb|EGC81895.1| RNA polymerase sigma factor RpoD [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 604
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 106/154 (68%)
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+LK + ++++KL NLRLVV +AK+Y GRG+S DL+QEG+MGLMK+V+K+
Sbjct: 357 ELKKAVFISKAAKQKLAETNLRLVVSIAKKYVGRGMSFLDLIQEGNMGLMKAVDKYDYNR 416
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+ P E++
Sbjct: 417 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLVQDLGRDPSNEEI 476
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
A ++GI VEK++ + I++ P+S++ P+ + D+
Sbjct: 477 AEQMGIEVEKVQEIRKISQEPVSLETPIGEEDDS 510
>gi|242310656|ref|ZP_04809811.1| RNA polymerase sigma factor [Helicobacter pullorum MIT 98-5489]
gi|239523054|gb|EEQ62920.1| RNA polymerase sigma factor [Helicobacter pullorum MIT 98-5489]
Length = 615
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 104/156 (66%)
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
+ ++ K+ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 373 ADRAKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYA 432
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
WW+RQ I +AI +RTIR+P ++ ++++ + R Y+QE PD E +A VG+ V
Sbjct: 433 TWWIRQAISRAIADQARTIRIPIHMIETINRINKIMRKYLQEEGKEPDIEKIAEEVGLPV 492
Query: 446 EKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+K++ +I IT+ P+S++ P+ +D F D A
Sbjct: 493 DKVKNVIKITKEPISLEAPIGNGEDGKFGDFVEDKA 528
>gi|555686|gb|AAA85644.1| sigma factor MysB [Mycobacterium smegmatis str. MC2 155]
Length = 319
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 128/217 (58%), Gaps = 15/217 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L++ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLDTKKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL++ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 ARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q
Sbjct: 127 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREAT 186
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
E+LA GI VEK+ L+ +R P+S+ PV D++
Sbjct: 187 DEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEE 223
>gi|363899334|ref|ZP_09325843.1| hypothetical protein HMPREF9625_00503 [Oribacterium sp. ACB1]
gi|395208255|ref|ZP_10397496.1| RNA polymerase sigma factor RpoD [Oribacterium sp. ACB8]
gi|361958374|gb|EHL11673.1| hypothetical protein HMPREF9625_00503 [Oribacterium sp. ACB1]
gi|394705836|gb|EJF13360.1| RNA polymerase sigma factor RpoD [Oribacterium sp. ACB8]
Length = 385
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 128/234 (54%), Gaps = 40/234 (17%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG DP+R++L T LLTA+EE+ L ++ Q G E
Sbjct: 106 LLEGIGTEDPVRMYLKEIGTVPLLTAEEEYSL---------------AMKKQEGDE---- 146
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
+AK ++LI ANLRLVV +AK+Y GRG+S DL+QEG++GL
Sbjct: 147 -YAK--------------------QRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGL 185
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
+K VEKF P+ G + ++YA WW+RQ++ +A+ +RTIR+P ++ ++K+ + +R
Sbjct: 186 IKGVEKFDPEKGFKLSTYATWWIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTL 245
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E + P ++LA + +T EK++ ++ I R P S++ P+ + D+ DA
Sbjct: 246 ELGYEPSVKELAEHLDMTEEKVQEIMQIAREPASLETPIGEEDDSNLGDFVADA 299
>gi|290967746|ref|ZP_06559301.1| RNA polymerase sigma factor RpoD [Megasphaera genomosp. type_1 str.
28L]
gi|335049249|ref|ZP_08542250.1| RNA polymerase sigma factor RpoD [Megasphaera sp. UPII 199-6]
gi|290782262|gb|EFD94835.1| RNA polymerase sigma factor RpoD [Megasphaera genomosp. type_1 str.
28L]
gi|333763615|gb|EGL41055.1| RNA polymerase sigma factor RpoD [Megasphaera sp. UPII 199-6]
Length = 423
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 131/232 (56%), Gaps = 32/232 (13%)
Query: 242 SVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGR 301
+V + EG + +DP+R++L LL+ADEE L
Sbjct: 128 TVDLSVPEGINIDDPVRMYLKEIGRVPLLSADEEITL----------------------- 164
Query: 302 EPTLIEWAKAI--GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
AKAI G ++ +G +++KL +ANLRLVV +AK+Y GRG+ DL+
Sbjct: 165 -------AKAIEKGNDENATVADKKNGIDAKKKLTDANLRLVVSIAKRYVGRGMLFLDLI 217
Query: 360 QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLE 419
QEG++GL+K+V+KF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++
Sbjct: 218 QEGNLGLLKAVDKFDYSKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIR 277
Query: 420 AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
R IQE P E++A ++ I VE++ ++ I + P+S++ P+ ++D+
Sbjct: 278 ISRQLIQEKGRDPLPEEIAEKMEIPVERVREIMKIAQEPVSLETPIGEEEDS 329
>gi|449019011|dbj|BAM82413.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 649
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 118/197 (59%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
+LT +EE L QI L+ E+++ +L R PT E A+ +G+ + L
Sbjct: 338 MLTPEEEVSLSRQISRLLHWERKRIELHGALDRAPTDDELAEHLGVDPERFRRNLAEARR 397
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++++++ ANLRLVV +AK+Y +G+ L DL+QEGS+GL+++ EKF + GCRF++YA WW
Sbjct: 398 AKDRMVAANLRLVVSIAKRYMRKGLPLEDLIQEGSLGLIRAAEKFDDRRGCRFSTYATWW 457
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
V+Q++ +A+ R +RLP +++ + V +A R E P + D+ R+GI+ ++L
Sbjct: 458 VKQSVMRALADQGRIVRLPVHMHDRILAVRKAARDLSIERGCEPTEADICERLGISRKRL 517
Query: 449 ERLIFITRMPLSMQQPV 465
L + +S++ V
Sbjct: 518 RELRSLAVQTISLESSV 534
>gi|421189689|ref|ZP_15647003.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB422]
gi|421190853|ref|ZP_15648137.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB548]
gi|399972779|gb|EJO06978.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB422]
gi|399973549|gb|EJO07714.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB548]
Length = 458
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 37/233 (15%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G NDP+R++L LL AD+E + R+EK S
Sbjct: 178 GVKINDPVRMYLKEIGRVSLLNADQEVAIAK------RIEKGGS---------------- 215
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
G +R++L ANLRLVV +AK+Y GRG+ DL+QEG+MGLMK+
Sbjct: 216 ---------------DGERARQELAEANLRLVVSIAKRYVGRGMHFLDLIQEGNMGLMKA 260
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R IQ+
Sbjct: 261 VEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRTLIQDLG 320
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
P E++ +G+T +K+ + I + P+S++ P+ + D+ D G
Sbjct: 321 RDPMPEEIGAEMGLTADKVREIQKIAQEPVSLETPIGEENDSHLGDFIEDNEG 373
>gi|402546916|ref|ZP_10843789.1| RNA polymerase sigma factor RpoD [Campylobacter sp. FOBRC14]
gi|401016751|gb|EJP75514.1| RNA polymerase sigma factor RpoD [Campylobacter sp. FOBRC14]
Length = 614
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 105/147 (71%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ ++ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 373 DEAKARMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYRKGYKFSTYAT 432
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW+RQ I +AI +RTIR+P ++ ++++ + R Y+QE PD +A+ VG++V+
Sbjct: 433 WWIRQAISRAIADQARTIRIPIHMIETINRINKINRKYLQEEGKEPDVSVIAKEVGLSVD 492
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++++I IT+ P+S++ P+ ++D F
Sbjct: 493 KVKQVIKITKEPISLEAPIANEEDGKF 519
>gi|374853415|dbj|BAL56324.1| RNA polymerase primary sigma factor [uncultured candidate division
OP1 bacterium]
gi|374857281|dbj|BAL60134.1| RNA polymerase primary sigma factor [uncultured candidate division
OP1 bacterium]
Length = 334
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 318 DLKSELHSG-NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQ 376
+L S + +G +R++LI ANLRLVV +AK+Y GRG+S DL+QEG++GLM++VEKF P
Sbjct: 79 ELASRVVAGEKCARDELITANLRLVVSIAKKYMGRGLSFLDLIQEGNLGLMRAVEKFDPT 138
Query: 377 AGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKED 436
G +F++YA WW+RQ I +AI SRTIR+P ++ + ++ K+ ++QE +PD E
Sbjct: 139 KGFKFSTYATWWIRQAITRAIADQSRTIRIPVHMIETVRELQRLKKEHVQEHGAAPDLEA 198
Query: 437 LARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
L+ +GI EK++++ +++ S+++P+ D++ T
Sbjct: 199 LSSELGIPQEKIKQVENVSQYTTSLERPIGEDEEDTL 235
>gi|154173683|ref|YP_001408074.1| RNA polymerase sigma factor RpoD [Campylobacter curvus 525.92]
gi|112802903|gb|EAU00247.1| RNA polymerase sigma factor RpoD (Sigma-A) (Major vegetative
sigmafactor) [Campylobacter curvus 525.92]
Length = 614
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 105/147 (71%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ ++ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 373 DEAKARMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYRKGYKFSTYAT 432
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW+RQ I +AI +RTIR+P ++ ++++ + R Y+QE PD +A+ VG++V+
Sbjct: 433 WWIRQAISRAIADQARTIRIPIHMIETINRINKINRKYLQEEGKEPDVSVIAKEVGLSVD 492
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++++I IT+ P+S++ P+ ++D F
Sbjct: 493 KVKQVIKITKEPISLEAPIANEEDGKF 519
>gi|379709871|ref|YP_005265076.1| RNA polymerase sigma factor SigB [Nocardia cyriacigeorgica GUH-2]
gi|374847370|emb|CCF64440.1| RNA polymerase sigma factor SigB [Nocardia cyriacigeorgica GUH-2]
Length = 322
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 130/219 (59%), Gaps = 17/219 (7%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I+ + L +Q L+E K +
Sbjct: 24 DLVRVYLNGIGRTALLTAADEVELAKRIE---------AGLYAQH-----LLETGKRLSA 69
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 70 ARKRDLAVIVREGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 129
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKR-LYIQEGNHSP 432
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR L+ Q G +
Sbjct: 130 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREAT 189
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
D E LA GI VEK+ L+ +R P+S+ PV D++
Sbjct: 190 DDE-LANESGIPVEKIADLLDHSRDPVSLDMPVGNDEEA 227
>gi|269792833|ref|YP_003317737.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100468|gb|ACZ19455.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 387
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 119/188 (63%), Gaps = 18/188 (9%)
Query: 298 QFGREPTL-----IEWAKAIGLSCRDLKSELHSGNS-SREKLINANLRLVVHVAKQYQGR 351
+ GR P L +E AK + +G+ ++EKL+ ANLRLVV +AK+Y GR
Sbjct: 124 EIGRIPLLSPEEEVELAKGV-----------EAGDKRAKEKLVEANLRLVVSIAKKYIGR 172
Query: 352 GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIY 411
G+ DL+QEG++GL+++VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++
Sbjct: 173 GMLFLDLIQEGNLGLIRAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMV 232
Query: 412 TLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
++K++ R+ +Q P E++A+ +G+TV+++E + I + P+S++ P+ ++D+
Sbjct: 233 ETINKLIRISRVLVQRLGREPSAEEIAQEMGVTVDRVEEIQKIAQEPVSLETPIGEEEDS 292
Query: 472 TFQSTFLD 479
FL+
Sbjct: 293 QL-GDFLE 299
>gi|22298042|ref|NP_681289.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
gi|22294220|dbj|BAC08051.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 375
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 112/177 (63%), Gaps = 4/177 (2%)
Query: 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
Q GR+ WAKA ++ +L+ G ++ +L+ ANLRLVV++AK+YQ G+ D
Sbjct: 109 QAGRQA----WAKAANITLSELQHIERQGQRAKNQLLQANLRLVVNIAKKYQHHGVEFLD 164
Query: 358 LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKV 417
L+QEGS+GL ++VEKF P G RF++YAYWW+RQ+I +A+ SRTIRLP ++ L+K+
Sbjct: 165 LIQEGSLGLERAVEKFDPTKGFRFSTYAYWWIRQSITRAVASQSRTIRLPIHMVEKLNKI 224
Query: 418 LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 474
A+R + P D+A+ + + V ++ +++ ++++Q V +DQ+T Q
Sbjct: 225 KRAQRRLAAQRGAMPSLADIAQELNLEVSQVRQVLMAVPKSVALEQRVGSDQETELQ 281
>gi|406707970|ref|YP_006758322.1| RNA polymerase sigma-70 subunit RpoD [alpha proteobacterium HIMB59]
gi|406653746|gb|AFS49145.1| RNA polymerase, sigma 70 subunit, RpoD [alpha proteobacterium
HIMB59]
Length = 684
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 112/164 (68%), Gaps = 1/164 (0%)
Query: 316 CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
R+++S + N +++++I ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+
Sbjct: 433 VREIQSGQRTANQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY 492
Query: 376 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKE 435
+ G +F++YA WW+RQ I ++I +RTIR+P ++ ++K++ + R I E P E
Sbjct: 493 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRSSRQLILELGREPTPE 552
Query: 436 DLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+L+ R+ + +EK+ +++ I + P+S++ P+ D D +F F++
Sbjct: 553 ELSARLKMPIEKVRKVLKIAKEPVSLETPI-GDDDDSFLGDFIE 595
>gi|365153375|ref|ZP_09349815.1| RNA polymerase sigma factor RpoD [Campylobacter sp. 10_1_50]
gi|416117248|ref|ZP_11594551.1| RNA polymerase sigma factor RpoD [Campylobacter concisus UNSWCD]
gi|363651903|gb|EHL90955.1| RNA polymerase sigma factor RpoD [Campylobacter sp. 10_1_50]
gi|384577205|gb|EIF06497.1| RNA polymerase sigma factor RpoD [Campylobacter concisus UNSWCD]
Length = 617
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 104/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ ++ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 376 DEAKARMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYRKGYKFSTYAT 435
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW+RQ I +AI +RTIR+P ++ ++++ + R Y+QE PD +A+ VG++V+
Sbjct: 436 WWIRQAISRAIADQARTIRIPIHMIETINRINKINRKYLQEEGKEPDVSVIAKEVGLSVD 495
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++++I IT+ P+S++ P+ + D F
Sbjct: 496 KVKQVIKITKEPISLEAPIANEDDGKF 522
>gi|392404353|ref|YP_006440965.1| RNA polymerase, sigma 70 subunit, RpoD [Turneriella parva DSM
21527]
gi|390612307|gb|AFM13459.1| RNA polymerase, sigma 70 subunit, RpoD [Turneriella parva DSM
21527]
Length = 651
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 127/192 (66%), Gaps = 10/192 (5%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIE--WAKAIGLSCRDLKSELHSGNSSREKLINANLR 339
I+D+ E++ +++ + G PTLI W + I R++ ++++++LINANLR
Sbjct: 371 IKDIRNNERKLRRMEQEAG-SPTLIILLWGEKIARGQREI-------DAAKKELINANLR 422
Query: 340 LVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQ 399
LVV +AK++ RG+ DL+QEG++GLM++VEKF+ + G +F++YA WW+RQ I +A+ +
Sbjct: 423 LVVSIAKRFANRGMHFFDLIQEGNIGLMRAVEKFEYRKGYKFSTYATWWIRQAITRALSE 482
Query: 400 HSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPL 459
+RTIR+P ++ ++KV R+++QE P +++ R+G V K++++ + + P+
Sbjct: 483 QARTIRIPSHMIEQINKVNREARIFLQETGREPSDDEIGERLGWPVIKVKQVKSVAKDPV 542
Query: 460 SMQQPVWADQDT 471
S++ PV D+D+
Sbjct: 543 SLETPVGEDEDS 554
>gi|291459241|ref|ZP_06598631.1| RNA polymerase sigma factor RpoD [Oribacterium sp. oral taxon 078
str. F0262]
gi|291418495|gb|EFE92214.1| RNA polymerase sigma factor RpoD [Oribacterium sp. oral taxon 078
str. F0262]
Length = 398
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 102/151 (67%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+R++L+ ANLRLVV +AK+Y GRG+S+ DL+QEG++GLMK VEKF+P G + ++YA WW
Sbjct: 159 ARQRLVEANLRLVVSIAKRYTGRGMSILDLIQEGNLGLMKGVEKFEPDKGFKLSTYATWW 218
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +A+ SRTIR+P ++ ++KV +R E + P ++LA + +T EKL
Sbjct: 219 IRQGITRALADQSRTIRVPVHMVESINKVTRTQRRLTLELGYEPSPKELAASLNMTEEKL 278
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+ ++ +++ P S++ PV ++D+ D
Sbjct: 279 KEILDVSKQPTSLETPVGDEEDSNLSDFVAD 309
>gi|163841160|ref|YP_001625565.1| RNA polymerase principal sigma factor [Renibacterium salmoninarum
ATCC 33209]
gi|1808669|emb|CAA71796.1| RNA polymerase [Renibacterium salmoninarum]
gi|162954636|gb|ABY24151.1| RNA polymerase principal sigma factor [Renibacterium salmoninarum
ATCC 33209]
Length = 462
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 135/244 (55%), Gaps = 21/244 (8%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI----RLEKEKSKLQ 296
A V++ +S G DP++ +L LL A++E +L +I+ + +L + K+
Sbjct: 150 APVQQVMSAGA-TADPVKDYLKQIGKVALLNAEQEVDLALRIEAGLYAEEKLAADDGKIT 208
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ RE +W +H G ++ L+ ANLRLVV +AK+Y GRG+
Sbjct: 209 EKLNRE---YQWV-------------IHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFL 252
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSK 416
DL+QEG+MGL+++VEKF G +F++YA WW+RQ I +A+ +RTIR+P ++ +++K
Sbjct: 253 DLIQEGNMGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINK 312
Query: 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQST 476
+ +R +Q+ P E+LA + +T EK+ + R P+S+ P+ D D+ F
Sbjct: 313 LARVQRQMLQDLGREPTPEELALELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDL 372
Query: 477 FLDA 480
D+
Sbjct: 373 IEDS 376
>gi|330813718|ref|YP_004357957.1| RNA polymerase sigma factor RpoD [Candidatus Pelagibacter sp.
IMCC9063]
gi|327486813|gb|AEA81218.1| RNA polymerase sigma factor RpoD [Candidatus Pelagibacter sp.
IMCC9063]
Length = 621
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 149/267 (55%), Gaps = 34/267 (12%)
Query: 229 QVTNHE----TYNSRKASV-------KKKLSEGFDRNDPLRLFL---WGPETRKLLTADE 274
QVT + YN K ++ + L G R+D ++ ++ P L+ D+
Sbjct: 273 QVTQEDLVALNYNENKKAINLDGDLMRAALKYGISRDDFIKFYVGNELNPNFESFLSGDK 332
Query: 275 EF-ELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK---SELHSGNS-- 328
+ + Q L ++ +EK L + +K IG+S D K +++ G
Sbjct: 333 NWSKFFKNEQKLFKISREK------------LTDLSKNIGISISDFKILVNKIKKGERES 380
Query: 329 --SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+++++I ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 381 RIAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 440
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW+RQ I ++I +RTIR+P ++ ++K++ R + E P E+L++++ + +E
Sbjct: 441 WWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMMSEYGREPTPEELSKKLAMPLE 500
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K+ +++ I + P+S++ PV + D++
Sbjct: 501 KVRKVLKIAKEPISLETPVGDEDDSSL 527
>gi|323453176|gb|EGB09048.1| hypothetical protein AURANDRAFT_53467 [Aureococcus anophagefferens]
Length = 468
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 122/219 (55%), Gaps = 5/219 (2%)
Query: 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKA 311
DR++ L + LL++DEE L ++Q L E ++ L + GREPT +EW A
Sbjct: 131 DRDEGLHWQIRNMGQTALLSSDEEKALARRVQRLCTWEGIRANLTASLGREPTELEWGAA 190
Query: 312 IGLS---CRDLKSELHSGNSSREK--LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
+S C + E + K +INANLRLVV ++K+YQ RG+ D++QEG+ GL
Sbjct: 191 ARISRAACENGSFEKARKKCLKAKAAMINANLRLVVSISKRYQHRGLHFQDVIQEGTFGL 250
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
++VEKF P+ G +F++YA WW++Q + +AI SRTIRLP +++ L + + R
Sbjct: 251 TRAVEKFDPEKGFKFSTYATWWIKQAVMRAIADQSRTIRLPVHVHDQLQSMKKVTRDLGA 310
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPV 465
E E+LA ++ + K++ L R +SM V
Sbjct: 311 ELGRECTDEELAGKLDLATTKMDWLRSCERQTMSMDATV 349
>gi|354565057|ref|ZP_08984233.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353550183|gb|EHC19622.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 389
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 129/211 (61%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L + + ++ L+ + G +PT A + ++ + L++ L+ G
Sbjct: 91 LLKPDEEVELARRVRFLEEVNEIQAALRQELGHQPTKASIAAHLQITEKQLENRLYQGRV 150
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 210
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIRLP +I L+K+ +A+R Q +P++ ++A + I ++L
Sbjct: 211 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQRLGRNPNEIEMAEALEIPPQQL 270
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+L + R LS+ V ++DT D
Sbjct: 271 RQLQQLRRQALSLNHRVGKEEDTELMDLLED 301
>gi|239616750|ref|YP_002940072.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Kosmotoga olearia
TBF 19.5.1]
gi|239505581|gb|ACR79068.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Kosmotoga olearia
TBF 19.5.1]
Length = 405
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 317 RDLKSELHSGNS-SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
R+L G+ +RE+LI ANLRLVV +AK+Y GRG+S DL+QEG++GL+K+VEKF
Sbjct: 147 RELARRAQKGDKKAREELITANLRLVVSIAKRYIGRGLSFLDLIQEGNIGLIKAVEKFDW 206
Query: 376 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKE 435
+ G +F++YA WW+RQ I +AI +RTIR+P ++ ++KV + R ++QE P E
Sbjct: 207 KKGYKFSTYATWWIRQAITRAIADQARTIRVPVHMVETINKVNKVIREHLQEHGEYPTVE 266
Query: 436 DLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+L + G T EK+E ++ ++ +S++ P+ D+++T
Sbjct: 267 ELGKLTGKTPEKIEEILAASKETVSLESPISGDEESTM 304
>gi|120403441|ref|YP_953270.1| RNA polymerase sigma factor SigB [Mycobacterium vanbaalenii PYR-1]
gi|119956259|gb|ABM13264.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium
vanbaalenii PYR-1]
Length = 329
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 130/227 (57%), Gaps = 15/227 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L++ K +G
Sbjct: 31 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLDTRKRLGE 76
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 77 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 136
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q
Sbjct: 137 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREAT 196
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E+LA GI VEK+ L+ +R P+S+ PV +D++ DA
Sbjct: 197 DEELAAESGIPVEKITDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDA 243
>gi|374301417|ref|YP_005053056.1| RpoD subfamily RNA polymerase sigma-70 subunit [Desulfovibrio
africanus str. Walvis Bay]
gi|332554353|gb|EGJ51397.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfovibrio
africanus str. Walvis Bay]
Length = 594
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 104/149 (69%), Gaps = 2/149 (1%)
Query: 327 NSSREK--LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384
N+SR K LI ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G +F++Y
Sbjct: 352 NASRAKRELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTY 411
Query: 385 AYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGIT 444
A WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A R+
Sbjct: 412 ATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIAERMDYP 471
Query: 445 VEKLERLIFITRMPLSMQQPVWADQDTTF 473
+EK+++++ I + P+S++ P+ ++D++
Sbjct: 472 IEKVKKVLKIAKEPISLETPIGDEEDSSL 500
>gi|167037157|ref|YP_001664735.1| RNA polymerase sigma factor RpoD [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167039957|ref|YP_001662942.1| RNA polymerase sigma factor RpoD [Thermoanaerobacter sp. X514]
gi|256751255|ref|ZP_05492135.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Thermoanaerobacter ethanolicus CCSD1]
gi|300915505|ref|ZP_07132817.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Thermoanaerobacter sp. X561]
gi|307724719|ref|YP_003904470.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermoanaerobacter
sp. X513]
gi|320115576|ref|YP_004185735.1| RNA polymerase sigma factor RpoD [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|326390577|ref|ZP_08212133.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Thermoanaerobacter ethanolicus JW 200]
gi|345018012|ref|YP_004820365.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermoanaerobacter
wiegelii Rt8.B1]
gi|392940266|ref|ZP_10305910.1| LOW QUALITY PROTEIN: RNA polymerase sigma factor, sigma-70 family
[Thermoanaerobacter siderophilus SR4]
gi|166854197|gb|ABY92606.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermoanaerobacter
sp. X514]
gi|166855991|gb|ABY94399.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256749810|gb|EEU62834.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Thermoanaerobacter ethanolicus CCSD1]
gi|300888457|gb|EFK83607.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Thermoanaerobacter sp. X561]
gi|307581780|gb|ADN55179.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Thermoanaerobacter sp. X513]
gi|319928667|gb|ADV79352.1| RNA polymerase sigma factor RpoD [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|325993402|gb|EGD51838.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Thermoanaerobacter ethanolicus JW 200]
gi|344033355|gb|AEM79081.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Thermoanaerobacter wiegelii Rt8.B1]
gi|392292016|gb|EIW00460.1| LOW QUALITY PROTEIN: RNA polymerase sigma factor, sigma-70 family
[Thermoanaerobacter siderophilus SR4]
Length = 357
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 124/225 (55%), Gaps = 40/225 (17%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG +DP+R++L LLT +EE EL +I+
Sbjct: 78 LPEGISIDDPVRMYLKEIGKIPLLTPEEEIELAKRIE----------------------- 114
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
++++LI ANLRLVV +AK+Y GRG+ DL+QEG++GL
Sbjct: 115 -----------------QGDEEAKKRLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 157
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
+K+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q
Sbjct: 158 LKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQ 217
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E P E+LA+ +G+ EK+ ++ I + P+S++ P+ ++D+
Sbjct: 218 ELGREPTPEELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDS 262
>gi|301064644|ref|ZP_07205038.1| RNA polymerase sigma factor RpoD [delta proteobacterium NaphS2]
gi|300441264|gb|EFK05635.1| RNA polymerase sigma factor RpoD [delta proteobacterium NaphS2]
Length = 590
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 109/166 (65%), Gaps = 7/166 (4%)
Query: 313 GLSCRDLKSELHSGNSSREK-------LINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365
++ R+LKSEL S EK LI ANLRLVV +AK+Y RG+ DL+QEG++G
Sbjct: 328 NMTPRELKSELERVERSLEKASRAKSELIQANLRLVVSIAKKYTNRGLMFLDLIQEGNIG 387
Query: 366 LMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYI 425
LMK+V+KF+ Q G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +
Sbjct: 388 LMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLMRTSRYLV 447
Query: 426 QEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
QE P E++A ++ ++K+ +++ I + P+S++ P+ ++D+
Sbjct: 448 QEHGREPTSEEIAEKMEFPLDKVRKVLKIAKEPISLETPIGEEEDS 493
>gi|24214932|ref|NP_712413.1| RNA polymerase sigma-70 factor [Leptospira interrogans serovar Lai
str. 56601]
gi|45657567|ref|YP_001653.1| RNA polymerase sigma-70 factor [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|386074282|ref|YP_005988599.1| RNA polymerase sigma-70 factor [Leptospira interrogans serovar Lai
str. IPAV]
gi|417761074|ref|ZP_12409088.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
2002000624]
gi|417768940|ref|ZP_12416862.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pomona str. Pomona]
gi|417773531|ref|ZP_12421408.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
2002000621]
gi|417782997|ref|ZP_12430720.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
C10069]
gi|418667800|ref|ZP_13229205.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|418672640|ref|ZP_13233976.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
2002000623]
gi|418692659|ref|ZP_13253737.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
FPW2026]
gi|418701583|ref|ZP_13262507.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Bataviae str. L1111]
gi|418703527|ref|ZP_13264411.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|418710902|ref|ZP_13271668.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418717863|ref|ZP_13277402.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. UI
08452]
gi|418726272|ref|ZP_13284883.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. UI
12621]
gi|418733427|ref|ZP_13290551.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. UI
12758]
gi|421086235|ref|ZP_15547086.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str.
HAI1594]
gi|421118518|ref|ZP_15578855.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|421121172|ref|ZP_15581471.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. Brem
329]
gi|421124053|ref|ZP_15584323.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421134692|ref|ZP_15594825.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|26399555|sp|P59117.1|RPOD_LEPIN RecName: Full=RNA polymerase sigma factor RpoD
gi|47605974|sp|P61540.1|RPOD_LEPIC RecName: Full=RNA polymerase sigma factor RpoD
gi|24195965|gb|AAN49431.1|AE011394_5 RNA polymerase sigma-70 factor [Leptospira interrogans serovar Lai
str. 56601]
gi|45600806|gb|AAS70290.1| RNA polymerase sigma-70 factor [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|353458071|gb|AER02616.1| RNA polymerase sigma-70 factor [Leptospira interrogans serovar Lai
str. IPAV]
gi|400357892|gb|EJP14012.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
FPW2026]
gi|409943068|gb|EKN88671.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
2002000624]
gi|409949090|gb|EKN99072.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pomona str. Pomona]
gi|409953698|gb|EKO08194.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
C10069]
gi|409960182|gb|EKO23936.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. UI
12621]
gi|410009877|gb|EKO68031.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410021276|gb|EKO88068.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410346000|gb|EKO97044.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. Brem
329]
gi|410431800|gb|EKP76160.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str.
HAI1594]
gi|410438540|gb|EKP87626.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410576619|gb|EKQ39624.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
2002000621]
gi|410580328|gb|EKQ48153.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
2002000623]
gi|410756245|gb|EKR17870.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410759368|gb|EKR25581.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Bataviae str. L1111]
gi|410766663|gb|EKR37346.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410768502|gb|EKR43749.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410773036|gb|EKR53067.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. UI
12758]
gi|410786736|gb|EKR80474.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. UI
08452]
gi|455792672|gb|EMF44412.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Lora str. TE 1992]
gi|456821632|gb|EMF70138.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Canicola str. LT1962]
Length = 585
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 131/211 (62%), Gaps = 17/211 (8%)
Query: 265 ETRKLLTADEEFELIAQIQD----LIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
E + + DE E+I I++ L R+E+E + +W + I R++
Sbjct: 292 EVKMGVNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIK------DWGEKIIKGEREI- 344
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
+ ++++L+ ANLRLVV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +
Sbjct: 345 ------SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYK 398
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 440
F++YA WW+RQ I +AI +RTIR+P ++ ++KV+ RL+IQE P+ E++A R
Sbjct: 399 FSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAER 458
Query: 441 VGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+G V+K++ + + R P+S++ PV +++D+
Sbjct: 459 LGWPVQKVKMVKNVAREPISLEIPVGSEEDS 489
>gi|20808174|ref|NP_623345.1| RNA polymerase sigma factor RpoD [Thermoanaerobacter tengcongensis
MB4]
gi|20516766|gb|AAM24949.1| DNA-directed RNA polymerase sigma subunits (sigma70/sigma32)
[Thermoanaerobacter tengcongensis MB4]
Length = 372
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 124/225 (55%), Gaps = 40/225 (17%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG +DP+R++L LLT +EE EL +I+
Sbjct: 93 LPEGVSIDDPVRMYLKEIGKIPLLTPEEEIELAKRIE----------------------- 129
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
++++LI ANLRLVV +AK+Y GRG+ DL+QEG++GL
Sbjct: 130 -----------------QGDEEAKKRLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 172
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
+K+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q
Sbjct: 173 LKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQ 232
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E P E+LA+ +G+ EK+ ++ I + P+S++ P+ ++D+
Sbjct: 233 ELGREPTPEELAKEMGMPEEKVREILKIAQEPVSLETPIGEEEDS 277
>gi|418696549|ref|ZP_13257558.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str. H1]
gi|409956078|gb|EKO15010.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str. H1]
Length = 579
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 131/211 (62%), Gaps = 17/211 (8%)
Query: 265 ETRKLLTADEEFELIAQIQD----LIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
E + + DE E+I I++ L R+E+E + +W + I R++
Sbjct: 286 EVKMGVNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIK------DWGEKIIKGEREI- 338
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
+ ++++L+ ANLRLVV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +
Sbjct: 339 ------SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYK 392
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 440
F++YA WW+RQ I +AI +RTIR+P ++ ++KV+ RL+IQE P+ E++A R
Sbjct: 393 FSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAER 452
Query: 441 VGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+G V+K++ + + R P+S++ PV +++D+
Sbjct: 453 LGWPVQKVKMVKNVAREPISLEIPVGSEEDS 483
>gi|225026302|ref|ZP_03715494.1| hypothetical protein EUBHAL_00543 [Eubacterium hallii DSM 3353]
gi|224956366|gb|EEG37575.1| RNA polymerase sigma factor RpoD [Eubacterium hallii DSM 3353]
Length = 367
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 124/223 (55%), Gaps = 40/223 (17%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
EG DP+R++L LLTA+EE +AQ R+EK
Sbjct: 90 EGVSLEDPVRMYLKEIGNIPLLTAEEEV-FLAQ-----RIEK------------------ 125
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
+R++LI ANLRLVV +AK+Y GRG+S DL+QEG+MGLMK
Sbjct: 126 ----------------GDEQARKQLIEANLRLVVSIAKKYVGRGMSFLDLIQEGNMGLMK 169
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+VEKF + G +F++Y+ WW+RQ I + I ++TIR+P ++ ++K L R+ +QE
Sbjct: 170 AVEKFDYKKGNKFSTYSTWWIRQAITRGIADTAKTIRVPVHMVETINKTLRTSRMLLQEL 229
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
P E++A+++ + V K++ ++ +R P+S+ P+ ++D+
Sbjct: 230 GREPTNEEIAKKMNMPVAKIDEILKTSRDPVSLDTPIGEEEDS 272
>gi|421102433|ref|ZP_15563037.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410367547|gb|EKP22931.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
Length = 585
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 131/211 (62%), Gaps = 17/211 (8%)
Query: 265 ETRKLLTADEEFELIAQIQD----LIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
E + + DE E+I I++ L R+E+E + +W + I R++
Sbjct: 292 EVKMGVNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIK------DWGEKIIKGEREI- 344
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
+ ++++L+ ANLRLVV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +
Sbjct: 345 ------SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYK 398
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 440
F++YA WW+RQ I +AI +RTIR+P ++ ++KV+ RL+IQE P+ E++A R
Sbjct: 399 FSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAER 458
Query: 441 VGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+G V+K++ + + R P+S++ PV +++D+
Sbjct: 459 LGWPVQKVKMVKNVAREPISLEIPVGSEEDS 489
>gi|418681199|ref|ZP_13242432.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|400327020|gb|EJO79276.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|455666955|gb|EMF32326.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pomona str. Fox 32256]
Length = 585
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 131/211 (62%), Gaps = 17/211 (8%)
Query: 265 ETRKLLTADEEFELIAQIQD----LIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
E + + DE E+I I++ L R+E+E + +W + I R++
Sbjct: 292 EVKMGVNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIK------DWGEKIIKGEREI- 344
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
+ ++++L+ ANLRLVV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +
Sbjct: 345 ------SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYK 398
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 440
F++YA WW+RQ I +AI +RTIR+P ++ ++KV+ RL+IQE P+ E++A R
Sbjct: 399 FSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAER 458
Query: 441 VGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+G V+K++ + + R P+S++ PV +++D+
Sbjct: 459 LGWPVQKVKMVKNVAREPISLEIPVGSEEDS 489
>gi|398339101|ref|ZP_10523804.1| RNA polymerase sigma-70 factor [Leptospira kirschneri serovar Bim
str. 1051]
gi|418677117|ref|ZP_13238395.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418688253|ref|ZP_13249409.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418739874|ref|ZP_13296255.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421090834|ref|ZP_15551624.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str.
200802841]
gi|421106512|ref|ZP_15567079.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str. H2]
gi|421132400|ref|ZP_15592568.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str.
2008720114]
gi|400323017|gb|EJO70873.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|410000420|gb|EKO51050.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str.
200802841]
gi|410008439|gb|EKO62109.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str. H2]
gi|410356165|gb|EKP03522.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str.
2008720114]
gi|410737110|gb|EKQ81852.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410752996|gb|EKR09968.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 585
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 131/211 (62%), Gaps = 17/211 (8%)
Query: 265 ETRKLLTADEEFELIAQIQD----LIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
E + + DE E+I I++ L R+E+E + +W + I R++
Sbjct: 292 EVKMGVNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIK------DWGEKIIKGEREI- 344
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
+ ++++L+ ANLRLVV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +
Sbjct: 345 ------SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYK 398
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 440
F++YA WW+RQ I +AI +RTIR+P ++ ++KV+ RL+IQE P+ E++A R
Sbjct: 399 FSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAER 458
Query: 441 VGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+G V+K++ + + R P+S++ PV +++D+
Sbjct: 459 LGWPVQKVKMVKNVAREPISLEIPVGSEEDS 489
>gi|57505389|ref|ZP_00371317.1| RNA polymerase sigma factor RpoD [Campylobacter upsaliensis RM3195]
gi|57016214|gb|EAL53000.1| RNA polymerase sigma factor RpoD [Campylobacter upsaliensis RM3195]
Length = 619
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 107/147 (72%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ ++ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 376 DEAKGRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYAT 435
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW+RQ I +AI +RTIR+P ++ ++++ + R ++Q+ PD D+A+ VG++V+
Sbjct: 436 WWIRQAISRAIADQARTIRIPIHMIETINQINKIIREHLQKNGKEPDVNDIAKEVGLSVD 495
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++++I IT+ P+S++ P+ +++D F
Sbjct: 496 KVKQVIKITKEPISLEAPIGSEEDGKF 522
>gi|220932077|ref|YP_002508985.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothermothrix
orenii H 168]
gi|219993387|gb|ACL69990.1| RNA polymerase, sigma 70 subunit, RpoD family [Halothermothrix
orenii H 168]
Length = 358
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 40/225 (17%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
+ EG +DP+R++L LLTA+EE +L +I+
Sbjct: 79 IPEGVGIDDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------------- 115
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
++ +L+ ANLRLVV +AK+Y GRG+S DL+QEG+MGL
Sbjct: 116 -----------------QGDEQAKRELVEANLRLVVSIAKKYVGRGMSFLDLIQEGNMGL 158
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
+K+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +Q
Sbjct: 159 IKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQ 218
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E P E++ +G+ EK+ ++ I + P+S++ P+ ++D+
Sbjct: 219 EKGREPTPEEIGEEMGMPAEKVREILKIAQEPVSLETPIGEEEDS 263
>gi|375092093|ref|ZP_09738378.1| RNA polymerase sigma factor rpoD [Helcococcus kunzii ATCC 51366]
gi|374561859|gb|EHR33196.1| RNA polymerase sigma factor rpoD [Helcococcus kunzii ATCC 51366]
Length = 675
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 107/162 (66%), Gaps = 3/162 (1%)
Query: 313 GLSCRD---LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
GL D LK + G +++ KL NLRLVV +AK+Y GRG+S DL+QEG++GLMK+
Sbjct: 417 GLEDEDIKYLKKKYRIGKAAKGKLAETNLRLVVSIAKRYVGRGMSFLDLIQEGNLGLMKA 476
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +QE
Sbjct: 477 VEKFDYKRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLVQELG 536
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+P E++A+ + I V+K+ + I + P+S++ P+ + D+
Sbjct: 537 RTPTNEEIAKEMNIDVDKVREVRKIAQEPVSLEAPIGEEDDS 578
>gi|359726555|ref|ZP_09265251.1| RNA polymerase sigma-70 factor [Leptospira weilii str. 2006001855]
gi|398332850|ref|ZP_10517555.1| RNA polymerase sigma-70 factor [Leptospira alexanderi serovar
Manhao 3 str. L 60]
gi|417780595|ref|ZP_12428356.1| RNA polymerase sigma factor RpoD [Leptospira weilii str.
2006001853]
gi|410779304|gb|EKR63921.1| RNA polymerase sigma factor RpoD [Leptospira weilii str.
2006001853]
gi|456865569|gb|EMF83903.1| RNA polymerase sigma factor RpoD [Leptospira weilii serovar Topaz
str. LT2116]
Length = 585
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 131/211 (62%), Gaps = 17/211 (8%)
Query: 265 ETRKLLTADEEFELIAQIQD----LIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
E + + DE E+I I++ L R+E+E + +W + I R++
Sbjct: 292 EVKMGVNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIK------DWGEKIIKGEREI- 344
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
+ ++++L+ ANLRLVV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +
Sbjct: 345 ------SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYK 398
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 440
F++YA WW+RQ I +AI +RTIR+P ++ ++KV+ RL+IQE P+ E++A R
Sbjct: 399 FSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAER 458
Query: 441 VGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+G V+K++ + + R P+S++ PV +++D+
Sbjct: 459 LGWPVQKVKMVKNVAREPISLEIPVGSEEDS 489
>gi|166363676|ref|YP_001655949.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|166086049|dbj|BAG00757.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 414
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 123/214 (57%), Gaps = 22/214 (10%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------- 328
AQ+Q ++L + + +L +Q P+L WAK + +LK+ L +G
Sbjct: 104 AQVQQFVKLIEVRDQLTAQLAHRPSLERWAKTAQIRVSELKNALKAGKQRWAHLAGLEVG 163
Query: 329 -----------SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
++E++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++V+KF P
Sbjct: 164 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVKKFDPTK 223
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G RF++YAYWW+RQ + +AI S+ IRLP +I L+++ +A+R Q + E++
Sbjct: 224 GYRFSTYAYWWIRQGMTRAIATKSQIIRLPVHITEKLNRIKKAQRKISQMRGRTATVEEI 283
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
A+ + +T E + L+ +S++ V ++DT
Sbjct: 284 AQELALTPEAVRELLMTVPRSVSLEIKVGKEKDT 317
>gi|374338234|ref|YP_005094946.1| RNA polymerase sigma factor RpoD [Streptococcus macedonicus ACA-DC
198]
gi|372284346|emb|CCF02612.1| RNA polymerase sigma factor RpoD [Streptococcus macedonicus ACA-DC
198]
Length = 367
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 135/255 (52%), Gaps = 53/255 (20%)
Query: 220 SKKRKVSKP---QVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEF 276
S K V +P ++T+ E S A V NDP+R++L LLT++EE
Sbjct: 67 STKYVVEEPKPEELTDEELLGSNSAKV----------NDPVRMYLKEIGVVPLLTSEEEK 116
Query: 277 ELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINA 336
EL A+ ++ DL++ +++L A
Sbjct: 117 EL--------------------------------AVAVAAGDLQA--------KQRLAEA 136
Query: 337 NLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKA 396
NLRLVV +AK+Y GRG+ DL+QEG+MGLMK+V+KF G +F++YA WW+RQ I +A
Sbjct: 137 NLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRA 196
Query: 397 IFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITR 456
I +RTIR+P ++ ++K++ +R +QE P E +A R+ IT +K+ ++ I +
Sbjct: 197 IADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDITPDKVREILKIAQ 256
Query: 457 MPLSMQQPVWADQDT 471
P+S++ P+ + D+
Sbjct: 257 EPVSLETPIGEEDDS 271
>gi|410940970|ref|ZP_11372769.1| RNA polymerase sigma factor RpoD [Leptospira noguchii str.
2006001870]
gi|410783529|gb|EKR72521.1| RNA polymerase sigma factor RpoD [Leptospira noguchii str.
2006001870]
Length = 585
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 131/211 (62%), Gaps = 17/211 (8%)
Query: 265 ETRKLLTADEEFELIAQIQD----LIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
E + + DE E+I I++ L R+E+E + +W + I R++
Sbjct: 292 EVKMGVNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIK------DWGEKIIKGEREI- 344
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
+ ++++L+ ANLRLVV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +
Sbjct: 345 ------SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYK 398
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 440
F++YA WW+RQ I +AI +RTIR+P ++ ++KV+ RL+IQE P+ E++A R
Sbjct: 399 FSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAER 458
Query: 441 VGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+G V+K++ + + R P+S++ PV +++D+
Sbjct: 459 LGWPVQKVKMVKNVAREPISLEIPVGSEEDS 489
>gi|425464343|ref|ZP_18843665.1| RNA polymerase sigma-C factor [Microcystis aeruginosa PCC 9809]
gi|389833688|emb|CCI21586.1| RNA polymerase sigma-C factor [Microcystis aeruginosa PCC 9809]
Length = 414
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 123/214 (57%), Gaps = 22/214 (10%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------- 328
AQ+Q ++L + + +L +Q P+L WAK + +LK+ L +G
Sbjct: 104 AQVQQFVKLIEVRDQLTAQLAHRPSLERWAKTAQIRVSELKNALKAGKQRWAHLAGLEVG 163
Query: 329 -----------SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
++E++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++V+KF P
Sbjct: 164 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVKKFDPTK 223
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G RF++YAYWW+RQ + +AI S+ IRLP +I L+++ +A+R Q + E++
Sbjct: 224 GYRFSTYAYWWIRQGMTRAIATKSQIIRLPVHITEKLNRIKKAQRKISQMRGRTATVEEI 283
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
A+ + +T E + L+ +S++ V ++DT
Sbjct: 284 AQELALTPEAVRELLMTVPRSVSLEIKVGKEKDT 317
>gi|417764155|ref|ZP_12412127.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|400353669|gb|EJP05831.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Bulgarica str. Mallika]
Length = 585
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 131/211 (62%), Gaps = 17/211 (8%)
Query: 265 ETRKLLTADEEFELIAQIQD----LIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
E + + DE E+I I++ L R+E+E + +W + I R++
Sbjct: 292 EVKMGVNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIK------DWGEKIIKGEREI- 344
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
+ ++++L+ ANLRLVV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +
Sbjct: 345 ------SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYK 398
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 440
F++YA WW+RQ I +AI +RTIR+P ++ ++KV+ RL+IQE P+ E++A R
Sbjct: 399 FSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAER 458
Query: 441 VGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+G V+K++ + + R P+S++ PV +++D+
Sbjct: 459 LGWPVQKVKMVKNVAREPISLEIPVGSEEDS 489
>gi|408825995|ref|ZP_11210885.1| RNA polymerase sigma factor [Streptomyces somaliensis DSM 40738]
Length = 363
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 126/212 (59%), Gaps = 14/212 (6%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLTA EE EL +I+ + E+ + R P L DL + + G +
Sbjct: 80 LLTAAEEVELARRIEAGLFAEE-------KLARTPDLDSRLAG------DLDTLVVRGRT 126
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ +LI ANLRLVV +AK+Y GRG++L DL+QEG++GL+++VEKF + G +F++YA WW
Sbjct: 127 AKRRLIEANLRLVVSIAKRYAGRGLTLPDLVQEGNLGLIRAVEKFDHERGFKFSTYATWW 186
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ + +A+ +RTIR+P ++ L+++V+ +R +QE P E++A +G+ E++
Sbjct: 187 IRQAMSRALADQARTIRVPVHVVELINRVVRTQRRILQEHGREPTAEEVAAHLGLPPERV 246
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
++ + + P+S+ PV +DT D
Sbjct: 247 GEVLRLAQEPVSLHAPVGG-EDTALGDLIEDG 277
>gi|449107207|ref|ZP_21743864.1| RNA polymerase sigma factor RpoD [Treponema denticola ASLM]
gi|449109569|ref|ZP_21746203.1| RNA polymerase sigma factor RpoD [Treponema denticola ATCC 33520]
gi|449115694|ref|ZP_21752154.1| RNA polymerase sigma factor RpoD [Treponema denticola H-22]
gi|449120247|ref|ZP_21756633.1| RNA polymerase sigma factor RpoD [Treponema denticola H1-T]
gi|449122652|ref|ZP_21758985.1| RNA polymerase sigma factor RpoD [Treponema denticola MYR-T]
gi|451968903|ref|ZP_21922132.1| RNA polymerase sigma factor RpoD [Treponema denticola US-Trep]
gi|448947642|gb|EMB28486.1| RNA polymerase sigma factor RpoD [Treponema denticola MYR-T]
gi|448948391|gb|EMB29228.1| RNA polymerase sigma factor RpoD [Treponema denticola H1-T]
gi|448955180|gb|EMB35947.1| RNA polymerase sigma factor RpoD [Treponema denticola H-22]
gi|448958812|gb|EMB39540.1| RNA polymerase sigma factor RpoD [Treponema denticola ATCC 33520]
gi|448963008|gb|EMB43693.1| RNA polymerase sigma factor RpoD [Treponema denticola ASLM]
gi|451702356|gb|EMD56778.1| RNA polymerase sigma factor RpoD [Treponema denticola US-Trep]
Length = 619
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 134/216 (62%), Gaps = 17/216 (7%)
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG--- 326
++A+E ++ QIQ L R + K++ F E T+ E DL SE+ +G
Sbjct: 331 ISANEVKDIYTQIQVLTR---KIRKIEYDF--EATVDEVI--------DLTSEIKNGQRM 377
Query: 327 -NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
++++KLINANLRLVV +AK+Y RG+ DL+QEG++GL+K+VEKF+ + G +F++YA
Sbjct: 378 LKNAKDKLINANLRLVVSIAKKYINRGLQFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYA 437
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
WW+RQ I ++I +RTIR+P ++ ++KV R +Q+ P+ +++A ++G ++
Sbjct: 438 TWWIRQAITRSISDQARTIRVPVHMIEQINKVNRESRQLMQKLGREPNDDEIALQLGWSI 497
Query: 446 EKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
EK++++ + R P+S++ P+ ++DT D
Sbjct: 498 EKVKQVKNVAREPISLETPIGEEEDTLLGDLIEDKG 533
>gi|357588815|ref|ZP_09127481.1| RNA polymerase sigma factor SigB [Corynebacterium nuruki S6-4]
Length = 421
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 122/216 (56%), Gaps = 13/216 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL ++++ E L K
Sbjct: 123 DLVRVYLNGIGRTPLLTAADEVEL-------------SQRIEAGLYAEHLLDSGEKLTRA 169
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDLK + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 170 RKRDLKVLVREGRAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 229
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q+
Sbjct: 230 YAKGYKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATN 289
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
E+LA GI K+E L+ +R P+S+ PV +D++
Sbjct: 290 EELADESGIDESKIEMLLKQSRDPVSLDMPVGSDEE 325
>gi|406980685|gb|EKE02255.1| hypothetical protein ACD_20C00407G0008 [uncultured bacterium]
Length = 364
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 121/218 (55%), Gaps = 37/218 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L +LLTADEE EL
Sbjct: 88 DDPVRMYLREIGRIQLLTADEEIEL----------------------------------- 112
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
R + S G ++ KL+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++ EKF
Sbjct: 113 --ARKIVSGGKEGQIAKRKLVQANLRLVVSIAKKYVGRGMLFLDLIQEGNLGLIRAAEKF 170
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
+ G +F++YA WW+RQ I +AI +RTIR+P ++ ++K+ + R Q+ + P
Sbjct: 171 DHERGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLKKITRKLAQDLSRKPT 230
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+E++A + IT+ KL +I + + PLS++ P+ ++D+
Sbjct: 231 EEEIAEAMAITINKLREIIKVAQEPLSLETPIGKEEDS 268
>gi|320105405|ref|YP_004180995.1| RpoD subfamily RNA polymerase sigma-70 factor [Terriglobus
saanensis SP1PR4]
gi|319923926|gb|ADV81001.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Terriglobus
saanensis SP1PR4]
Length = 567
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 109/166 (65%), Gaps = 7/166 (4%)
Query: 313 GLSCRDLKS---ELHSGNSSREK----LINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365
GL+ DLK E+ G+ EK LI ANLRLVV +AK+Y RG+ DL+QEG++G
Sbjct: 302 GLTVEDLKRTQREMIQGDMDAEKAKRELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIG 361
Query: 366 LMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYI 425
LMK+V+KF+ + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +
Sbjct: 362 LMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLV 421
Query: 426 QEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
QE E++ARR+ I V K+ +++ I + P+S++ P+ ++D+
Sbjct: 422 QELGREASSEEIARRMDIPVAKVRKVLKIAQEPISLETPIGEEEDS 467
>gi|210633964|ref|ZP_03297935.1| hypothetical protein COLSTE_01853 [Collinsella stercoris DSM 13279]
gi|210159008|gb|EEA89979.1| RNA polymerase sigma factor RpoD [Collinsella stercoris DSM 13279]
Length = 445
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R++L LLTA EE +L +I+ + KL+ Q E IE +A
Sbjct: 140 GDPVRMYLKEIGKVDLLTAAEEVDLAMKIEAGL---DAADKLEKQ---EAGEIELTRA-- 191
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
R L G +++ LI+ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 192 -EMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 250
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
+ G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+ P
Sbjct: 251 DYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQDLGRDPT 310
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E++ + ++ +++ + I++ P+S++ P+ ++D+ DA
Sbjct: 311 PEEIGAEMDMSADRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDA 357
>gi|420426283|ref|ZP_14925339.1| RNA polymerase sigma factor [Helicobacter pylori Hp A-9]
gi|393045003|gb|EJB45993.1| RNA polymerase sigma factor [Helicobacter pylori Hp A-9]
Length = 680
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 439 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 498
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 499 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 558
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +TR P+S++ PV D D F
Sbjct: 559 KVKNVIKVTREPISLETPVGNDDDGKF 585
>gi|449102794|ref|ZP_21739541.1| RNA polymerase sigma factor RpoD [Treponema denticola AL-2]
gi|448965596|gb|EMB46257.1| RNA polymerase sigma factor RpoD [Treponema denticola AL-2]
Length = 619
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 134/216 (62%), Gaps = 17/216 (7%)
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG--- 326
++A+E ++ QIQ L R + K++ F E T+ E DL SE+ +G
Sbjct: 331 ISANEVKDIYTQIQVLTR---KIRKIEYDF--EATVDEVI--------DLTSEIKNGQRM 377
Query: 327 -NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
++++KLINANLRLVV +AK+Y RG+ DL+QEG++GL+K+VEKF+ + G +F++YA
Sbjct: 378 LKNAKDKLINANLRLVVSIAKKYINRGLQFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYA 437
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
WW+RQ I ++I +RTIR+P ++ ++KV R +Q+ P+ +++A ++G ++
Sbjct: 438 TWWIRQAITRSISDQARTIRVPVHMIEQINKVNRESRQLMQKLGREPNDDEIALQLGWSI 497
Query: 446 EKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
EK++++ + R P+S++ P+ ++DT D
Sbjct: 498 EKVKQVKNVAREPISLETPIGEEEDTLLGDLIEDKG 533
>gi|422341839|ref|ZP_16422779.1| RNA polymerase sigma-70 factor family protein [Treponema denticola
F0402]
gi|325473907|gb|EGC77095.1| RNA polymerase sigma-70 factor family protein [Treponema denticola
F0402]
Length = 619
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 134/216 (62%), Gaps = 17/216 (7%)
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG--- 326
++A+E ++ QIQ L R + K++ F E T+ E DL SE+ +G
Sbjct: 331 ISANEVKDIYTQIQVLTR---KIRKIEYDF--EATVDEVI--------DLTSEIKNGQRM 377
Query: 327 -NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
++++KLINANLRLVV +AK+Y RG+ DL+QEG++GL+K+VEKF+ + G +F++YA
Sbjct: 378 LKNAKDKLINANLRLVVSIAKKYINRGLQFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYA 437
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
WW+RQ I ++I +RTIR+P ++ ++KV R +Q+ P+ +++A ++G ++
Sbjct: 438 TWWIRQAITRSISDQARTIRVPVHMIEQINKVNRESRQLMQKLGREPNDDEIALQLGWSI 497
Query: 446 EKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
EK++++ + R P+S++ P+ ++DT D
Sbjct: 498 EKVKQVKNVAREPISLETPIGEEEDTLLGDLIEDKG 533
>gi|296272949|ref|YP_003655580.1| RpoD subfamily RNA polymerase sigma-70 factor subunit [Arcobacter
nitrofigilis DSM 7299]
gi|296097123|gb|ADG93073.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Arcobacter
nitrofigilis DSM 7299]
Length = 626
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 106/147 (72%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ ++ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 385 DEAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYAT 444
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW+RQ I +AI +RTIR+P ++ ++++ + R IQE P+ +++A+ VG+ V+
Sbjct: 445 WWIRQAISRAIADQARTIRIPIHMIETINRINKIIRKGIQENGKEPNVDEIAKEVGLPVD 504
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++++I IT+ P+S++ P+ +D+D F
Sbjct: 505 KVKQVIKITKEPVSLEAPIGSDEDGKF 531
>gi|168335371|ref|ZP_02693465.1| RNA polymerase, sigma 70 subunit, RpoD family protein [Epulopiscium
sp. 'N.t. morphotype B']
Length = 364
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 134/246 (54%), Gaps = 42/246 (17%)
Query: 229 QVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRL 288
+++N E N + + L EG +DP+R++L LL+AD+E +L +
Sbjct: 67 EISNIENENLNEDIIDFTLPEGVSIDDPVRMYLKEIGKVPLLSADDEIKLAKR------- 119
Query: 289 EKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS-SREKLINANLRLVVHVAKQ 347
+ SG+ +R++L ANLRLVV +AK+
Sbjct: 120 ----------------------------------MESGDEEARKRLAEANLRLVVSIAKR 145
Query: 348 YQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
Y GRG+ DL+QEG++GL+K+VEKF G +F++YA WW+RQ I +AI +RTIR+P
Sbjct: 146 YVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIP 205
Query: 408 ENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWA 467
++ ++K++ +R +QE P E++AR + ++V K+ ++ I++ P++++ P+
Sbjct: 206 VHMVETINKLMRIQRQLLQELGRDPQPEEIAREMELSVNKVREIMKISQEPVALETPIGE 265
Query: 468 DQDTTF 473
++DT
Sbjct: 266 EEDTNL 271
>gi|402816528|ref|ZP_10866118.1| RNA polymerase sigma factor rpoD [Paenibacillus alvei DSM 29]
gi|402505430|gb|EJW15955.1| RNA polymerase sigma factor rpoD [Paenibacillus alvei DSM 29]
Length = 298
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 107/157 (68%), Gaps = 1/157 (0%)
Query: 318 DLKSELHSGNSSREKLIN-ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQ 376
DL + G+ +K++ ANLRLVV +A++Y GRG+SL DL+QEG+MGL+K+V+KF
Sbjct: 49 DLAKRIAEGDEEAKKMLTEANLRLVVSIARRYAGRGMSLLDLIQEGNMGLIKAVDKFDYT 108
Query: 377 AGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKED 436
G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P+ E+
Sbjct: 109 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLVRVSRQLVQELGREPEVEE 168
Query: 437 LARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+A+ + ++VEK+ ++ I++ P+S++ P+ + DT
Sbjct: 169 IAKEMELSVEKVREIMKISQDPISLETPIGEEHDTKL 205
>gi|385221589|ref|YP_005770722.1| RNA polymerase sigma factor RpoD [Helicobacter pylori SouthAfrica7]
gi|317010368|gb|ADU84115.1| RNA polymerase sigma factor RpoD [Helicobacter pylori SouthAfrica7]
Length = 685
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 444 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 503
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R Y+QE PD E +A VG++++
Sbjct: 504 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKYMQENGKEPDLELVAEEVGLSLD 563
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 564 KVKNVIKVTKEPISLETPVGNDDDGKF 590
>gi|119487601|ref|ZP_01621211.1| RNA polymerase sigma-like factor [Lyngbya sp. PCC 8106]
gi|119455770|gb|EAW36906.1| RNA polymerase sigma-like factor [Lyngbya sp. PCC 8106]
Length = 404
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 115/201 (57%), Gaps = 22/201 (10%)
Query: 292 KSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SS 329
+S+L +Q G P+L WA G+ DLK + +G +
Sbjct: 106 RSRLVAQLGHSPSLERWAAVSGVEVSDLKPIIAAGKRRWAELAELTVEELDQVQTEGIKA 165
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWV 389
++ +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++Y+YWW+
Sbjct: 166 KDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYSYWWI 225
Query: 390 RQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLE 449
RQ I +AI SRTIRLP +I L+K+ +A+R QE +D+A + +T ++
Sbjct: 226 RQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRIATIDDIAAELEMTPAQVR 285
Query: 450 RLIFITRMPLSMQQPVWADQD 470
++ +S++ V +D+D
Sbjct: 286 EVLLKVPRSVSLETKVGSDKD 306
>gi|449128429|ref|ZP_21764675.1| RNA polymerase sigma factor RpoD [Treponema denticola SP33]
gi|448940837|gb|EMB21741.1| RNA polymerase sigma factor RpoD [Treponema denticola SP33]
Length = 619
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 113/168 (67%), Gaps = 4/168 (2%)
Query: 318 DLKSELHSG----NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
DL SE+ +G ++++KLINANLRLVV +AK+Y RG+ DL+QEG++GL+K+VEKF
Sbjct: 366 DLTSEIKNGQRMLKNAKDKLINANLRLVVSIAKKYINRGLQFFDLVQEGNIGLIKAVEKF 425
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
+ + G +F++YA WW+RQ I ++I +RTIR+P ++ ++KV R +Q+ P+
Sbjct: 426 EYRKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVNRESRQLMQKLGREPN 485
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+++A ++G ++EK++++ + R P+S++ P+ ++DT D
Sbjct: 486 DDEIALQLGWSIEKVKQVKNVAREPISLETPIGEEEDTLLGDLIEDKG 533
>gi|348027091|ref|YP_004766896.1| RNA polymerase sigma factor [Megasphaera elsdenii DSM 20460]
gi|341823145|emb|CCC74069.1| RNA polymerase sigma factor [Megasphaera elsdenii DSM 20460]
Length = 416
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 130/230 (56%), Gaps = 28/230 (12%)
Query: 242 SVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGR 301
+V + EG + +DP+R++L LL+A EE L I+ G
Sbjct: 121 NVDLSVPEGINIDDPVRMYLKEIGRVPLLSATEEITLAKAIEK---------------GN 165
Query: 302 EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQE 361
P E ++ +G +++KL +ANLRLVV +AK+Y GRG+ DL+QE
Sbjct: 166 APDATE-------------EDIKAGTIAKKKLTDANLRLVVSIAKRYVGRGMLFLDLIQE 212
Query: 362 GSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAK 421
G++GL+K+V+KF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++
Sbjct: 213 GNLGLLKAVDKFDYSKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIS 272
Query: 422 RLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
R +Q+ P E++A ++ I VE++ ++ I + P+S++ P+ ++D+
Sbjct: 273 RQLLQDKGREPLPEEIAEKMDIPVERVREIMKIAQEPVSLETPIGEEEDS 322
>gi|291444398|ref|ZP_06583788.1| RNA polymerase principal sigma factor hrdA [Streptomyces
roseosporus NRRL 15998]
gi|291347345|gb|EFE74249.1| RNA polymerase principal sigma factor hrdA [Streptomyces
roseosporus NRRL 15998]
Length = 395
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 107/163 (65%)
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
DL + G +++ +LI ANLRLVV VAK+Y GRG+++ DL+QEG++GL+++VEKF
Sbjct: 147 DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYAR 206
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G +F++YA WW+RQ + +A+ +RTIR+P ++ L+++V+ +R +QE P ED+
Sbjct: 207 GYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAEDI 266
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
A + +T E++ ++ + + P+S+ PV + D +F D
Sbjct: 267 AVELDLTPERVTEVLRLAQEPVSLHAPVGEEDDVSFGDLIEDG 309
>gi|229815176|ref|ZP_04445512.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
gi|229809186|gb|EEP44952.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
Length = 448
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R++L LLTA EE +L +I+ + KL+ Q E IE +A
Sbjct: 143 GDPVRMYLKEIGKVDLLTAAEEVDLAMKIEAGL---DAADKLEKQ---EAGEIELTRA-- 194
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
R L G +++ LI+ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 195 -EMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 253
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
+ G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+ P
Sbjct: 254 DYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQDLGRDPT 313
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E++ + ++ +++ + I++ P+S++ P+ ++D+ DA
Sbjct: 314 PEEIGAEMDMSADRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDA 360
>gi|116328273|ref|YP_797993.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leptospira borgpetersenii serovar Hardjo-bovis str.
L550]
gi|116330997|ref|YP_800715.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leptospira borgpetersenii serovar Hardjo-bovis str.
JB197]
gi|116121017|gb|ABJ79060.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leptospira borgpetersenii serovar Hardjo-bovis str.
L550]
gi|116124686|gb|ABJ75957.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leptospira borgpetersenii serovar Hardjo-bovis str.
JB197]
Length = 585
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 131/211 (62%), Gaps = 17/211 (8%)
Query: 265 ETRKLLTADEEFELIAQIQD----LIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
E + + DE E+I I++ L R+E+E + +W + I R++
Sbjct: 292 EVKMGVNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIK------DWGEKIIKGEREI- 344
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
+ ++++L+ ANLRLVV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +
Sbjct: 345 ------SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYK 398
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 440
F++YA WW+RQ I +AI +RTIR+P ++ ++KV+ RL+IQE P+ E++A R
Sbjct: 399 FSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAER 458
Query: 441 VGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+G V+K++ + + R P+S++ PV +++D+
Sbjct: 459 LGWPVQKVKMVKNVAREPISLEIPVGSEEDS 489
>gi|376295297|ref|YP_005166527.1| RpoD subfamily RNA polymerase sigma-70 subunit [Desulfovibrio
desulfuricans ND132]
gi|323457858|gb|EGB13723.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfovibrio
desulfuricans ND132]
Length = 583
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 107/155 (69%)
Query: 319 LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 378
+KS + ++++LI ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G
Sbjct: 335 IKSGNQTAMQAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRG 394
Query: 379 CRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLA 438
+F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A
Sbjct: 395 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPSPEEIA 454
Query: 439 RRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
R+ +EK+++++ I + P+S++ P+ ++D++
Sbjct: 455 ERMDYPLEKVKKVLKIAKEPISLETPIGDEEDSSL 489
>gi|441508327|ref|ZP_20990251.1| RNA polymerase sigma factor SigB [Gordonia aichiensis NBRC 108223]
gi|441447355|dbj|GAC48212.1| RNA polymerase sigma factor SigB [Gordonia aichiensis NBRC 108223]
Length = 336
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 136/256 (53%), Gaps = 15/256 (5%)
Query: 226 SKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDL 285
S V +T SR A ++ L D +R++L G LL A++E EL QI+
Sbjct: 9 STSTVAPGDTTPSRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE-- 66
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVA 345
+ + L + RDL + G ++R L+ ANLRLVV +A
Sbjct: 67 -----------AGLYAKHVLATRKRLSAAKKRDLAIVVREGETARSHLLEANLRLVVSLA 115
Query: 346 KQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIR 405
K+Y GRG+ L DL+QEG++GL++++EKF G +F++YA WW+RQ I + + SRTIR
Sbjct: 116 KRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIR 175
Query: 406 LPENIYTLLSKVLEAKR-LYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQP 464
LP ++ ++K+ KR L+ Q G + D E LA GI EK+ L+ +R P+S+ P
Sbjct: 176 LPVHLVEQVNKLARIKRELHQQLGREATDDE-LANESGIPAEKIADLLDHSRDPVSLDMP 234
Query: 465 VWADQDTTFQSTFLDA 480
V +D++ DA
Sbjct: 235 VGSDEEAPLGDFIEDA 250
>gi|253702377|ref|YP_003023566.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacter sp. M21]
gi|251777227|gb|ACT19808.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacter sp.
M21]
Length = 584
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 106/159 (66%), Gaps = 1/159 (0%)
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
H ++ +L+ ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G +F++
Sbjct: 342 HKAKLAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFST 401
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGI 443
YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A R+ +
Sbjct: 402 YATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMAL 461
Query: 444 TVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++K+ +++ I + P+S++ P+ ++D+ F++ G
Sbjct: 462 PLDKVRKVLKIAKEPISLETPIGEEEDSHL-GDFIEDKG 499
>gi|418719109|ref|ZP_13278309.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str. UI
09149]
gi|418738638|ref|ZP_13295031.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|421094152|ref|ZP_15554872.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str.
200801926]
gi|410362878|gb|EKP13911.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str.
200801926]
gi|410744262|gb|EKQ93003.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str. UI
09149]
gi|410745336|gb|EKQ98246.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|456887892|gb|EMF98905.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str.
200701203]
Length = 585
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 131/211 (62%), Gaps = 17/211 (8%)
Query: 265 ETRKLLTADEEFELIAQIQD----LIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
E + + DE E+I I++ L R+E+E + +W + I R++
Sbjct: 292 EVKMGVNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIK------DWGEKIIKGEREI- 344
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
+ ++++L+ ANLRLVV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +
Sbjct: 345 ------SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYK 398
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 440
F++YA WW+RQ I +AI +RTIR+P ++ ++KV+ RL+IQE P+ E++A R
Sbjct: 399 FSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAER 458
Query: 441 VGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+G V+K++ + + R P+S++ PV +++D+
Sbjct: 459 LGWPVQKVKMVKNVAREPISLEIPVGSEEDS 489
>gi|320159820|ref|YP_004173044.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
gi|319993673|dbj|BAJ62444.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
Length = 396
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 108/162 (66%)
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+L++++ G S+RE LI AN RLVV +AK+Y GRG+ DL+QEG++GLMK+VEK++ Q
Sbjct: 148 ELEAQIQDGESAREHLIKANTRLVVSIAKRYIGRGVPFLDLIQEGNLGLMKAVEKYEYQR 207
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G RF++YA WW+RQTI ++I RTIR+P ++ + ++ Q+ +P E+L
Sbjct: 208 GFRFSTYATWWIRQTITRSIADQGRTIRVPVHMVDRIRRLYRTTHEMEQKLGRTPTNEEL 267
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
A +GI K++ ++ ++ +PLS++ P+ D++ + F++
Sbjct: 268 ADAIGIKASKVDWMMRVSWLPLSLESPINEDEEDSELGQFIE 309
>gi|297570260|ref|YP_003691604.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfurivibrio
alkaliphilus AHT2]
gi|296926175|gb|ADH86985.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfurivibrio
alkaliphilus AHT2]
Length = 555
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 107/153 (69%), Gaps = 1/153 (0%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ +L+ +NLRLVV VAK+Y GRG+ L DL+QEG++GLMK+VEKF+ + G +F++YA WW
Sbjct: 316 AKNRLVQSNLRLVVSVAKKYAGRGLQLLDLVQEGNIGLMKAVEKFEYRRGYKFSTYATWW 375
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ + +AI RTIR+P ++ ++++L+ + Y ++ P E++A +G+ + K+
Sbjct: 376 IRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAKEYQRQHGREPTPEEMAEHLGVDIAKV 435
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+ ++ I + PLS+ PV + +D +F S F++ A
Sbjct: 436 KSILKIAKEPLSLDTPVGSGED-SFLSDFIEDA 467
>gi|189219555|ref|YP_001940196.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Methylacidiphilum infernorum V4]
gi|189186413|gb|ACD83598.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Methylacidiphilum infernorum V4]
Length = 623
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 109/166 (65%)
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQ 376
++LK L+ ++ +++ ANLRLV+ +AK+Y RG+S DL+QEG+MGLMK+VEKF+ +
Sbjct: 369 QELKQWLNEAIKAKSEMVEANLRLVISIAKKYSNRGLSFLDLIQEGNMGLMKAVEKFEYR 428
Query: 377 AGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKED 436
G +F++YA WW+RQ I ++I +RTIR+P ++ ++K++ ++ IQE P E+
Sbjct: 429 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLIQELGREPTPEE 488
Query: 437 LARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+A ++V+++ +I + + P+S+Q V +DTTF D A
Sbjct: 489 IADETQMSVDRIRTIIKMAQHPISLQAQVGESEDTTFGDFIEDKAA 534
>gi|108799144|ref|YP_639341.1| RNA polymerase sigma factor SigB [Mycobacterium sp. MCS]
gi|119868259|ref|YP_938211.1| RNA polymerase sigma factor SigB [Mycobacterium sp. KMS]
gi|126434752|ref|YP_001070443.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JLS]
gi|108769563|gb|ABG08285.1| RNA polymerase, sigma 28 subunit [Mycobacterium sp. MCS]
gi|119694348|gb|ABL91421.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
KMS]
gi|126234552|gb|ABN97952.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
JLS]
Length = 319
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 128/227 (56%), Gaps = 15/227 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L+ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLNTKKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
S RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 SRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q
Sbjct: 127 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREAT 186
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E+LA GI EK+ L+ +R P+S+ PV +D++ DA
Sbjct: 187 DEELAEESGIPAEKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDA 233
>gi|33864481|ref|NP_896041.1| type II alternative RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
gi|33641261|emb|CAE22391.1| Putative type II alternative RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
Length = 376
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 139/271 (51%), Gaps = 46/271 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ--------------------DLIRLEKEKS 293
DP+RL+L +LLT +EE L +Q +L RLE+ +
Sbjct: 19 TDPVRLYLQDIGRVELLTNEEEVTLARLVQRREALLKQERKLASNQEAIKELQRLEELQQ 78
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDL----------------------KSELHSGNSSRE 331
+ + PT EWA A GL+ +L K L +G +++
Sbjct: 79 REANHSCHWPTKQEWAMAAGLTLAELQEKIETGYKTWGALTGLDPLELKRSLRAGRRAKD 138
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
++I ANLRLVV VAK+YQ RGI L DL+QEG++GL ++VEKF P G RF++YAYWW+RQ
Sbjct: 139 QMIQANLRLVVAVAKKYQQRGIELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQ 198
Query: 392 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451
I +AI SRTIRLP +I L+++ ++ DLA+ +G++ E +
Sbjct: 199 GITRAIATQSRTIRLPMHITEKLNRIKRVQQEIASSQGRLASIADLAKALGLSEETVR-- 256
Query: 452 IFITRMP--LSMQQPVWADQDTTFQSTFLDA 480
+ + R+P +S++ + +QDT D+
Sbjct: 257 LTLMRVPRSISLETRIGQEQDTQLGDLLEDS 287
>gi|421097573|ref|ZP_15558258.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str.
200901122]
gi|410799400|gb|EKS01475.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str.
200901122]
Length = 585
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 131/211 (62%), Gaps = 17/211 (8%)
Query: 265 ETRKLLTADEEFELIAQIQD----LIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
E + + DE E+I I++ L R+E+E + +W + I R++
Sbjct: 292 EVKMGVNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIK------DWGEKIIKGEREI- 344
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
+ ++++L+ ANLRLVV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +
Sbjct: 345 ------SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYK 398
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 440
F++YA WW+RQ I +AI +RTIR+P ++ ++KV+ RL+IQE P+ E++A R
Sbjct: 399 FSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAER 458
Query: 441 VGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+G V+K++ + + R P+S++ PV +++D+
Sbjct: 459 LGWPVQKVKMVKNVAREPISLEIPVGSEEDS 489
>gi|224823888|ref|ZP_03696997.1| RNA polymerase, sigma 70 subunit, RpoD [Pseudogulbenkiania
ferrooxidans 2002]
gi|224604343|gb|EEG10517.1| RNA polymerase, sigma 70 subunit, RpoD [Pseudogulbenkiania
ferrooxidans 2002]
Length = 640
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 112/165 (67%), Gaps = 7/165 (4%)
Query: 314 LSCRDLKS---ELHSGNS----SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
LS +DLK ++ +G S +++++I ANLRLV+ +AK+Y RG+ DL+QEG++GL
Sbjct: 375 LSIKDLKEINRQMSAGESKARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 434
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
MK+V+KF+ + G +F++YA WW+RQ I ++I +RTIR+P ++ ++K+ R +Q
Sbjct: 435 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQ 494
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E H PD +LA R+ + +K+ +++ I++ P+SM+ P+ D D+
Sbjct: 495 ETGHEPDPAELAERMEMPEDKIRKIMKISKEPISMETPIGDDDDS 539
>gi|420406052|ref|ZP_14905225.1| RNA polymerase sigma factor [Helicobacter pylori CPY6271]
gi|393021871|gb|EJB23001.1| RNA polymerase sigma factor [Helicobacter pylori CPY6271]
Length = 676
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 103/148 (69%)
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 434 SDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYA 493
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG+++
Sbjct: 494 TWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSL 553
Query: 446 EKLERLIFITRMPLSMQQPVWADQDTTF 473
+K++ +I +T+ P+S++ PV D D F
Sbjct: 554 DKVKNVIKVTKEPISLETPVGNDDDGKF 581
>gi|262276866|ref|ZP_06054659.1| RNA polymerase sigma factor RpoD [alpha proteobacterium HIMB114]
gi|262223969|gb|EEY74428.1| RNA polymerase sigma factor RpoD [alpha proteobacterium HIMB114]
Length = 613
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 118/176 (67%), Gaps = 7/176 (3%)
Query: 305 LIEWAKAIGLSCRDLK---SELHSGNS----SREKLINANLRLVVHVAKQYQGRGISLHD 357
LIE + IG+S D + +++ G +++++I ANLRLV+ +AK+Y RG+ D
Sbjct: 344 LIELSDNIGMSISDFRILVNKIKKGERESRIAKKEMIEANLRLVISIAKKYTNRGLQFLD 403
Query: 358 LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKV 417
L+QEG++GLMK+V+KF+ + G +F++YA WW+RQ I ++I +RTIR+P ++ ++K+
Sbjct: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKI 463
Query: 418 LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+ +R + E P E+L++++ + +EK+ +++ I + P+S++ PV ++D+T
Sbjct: 464 VRTQRQMMSEFGREPTPEELSKKLAMPLEKVRKVLKIAKEPVSLETPVGDEEDSTL 519
>gi|355576273|ref|ZP_09045605.1| hypothetical protein HMPREF1008_01582 [Olsenella sp. oral taxon 809
str. F0356]
gi|354816925|gb|EHF01437.1| hypothetical protein HMPREF1008_01582 [Olsenella sp. oral taxon 809
str. F0356]
Length = 461
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 132/228 (57%), Gaps = 9/228 (3%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R++L LLTA EE L +I+ + KL++ E IE +A
Sbjct: 157 GDPVRMYLKEIGKVDLLTASEEVNLAMKIEAGT---EASQKLEAADNGE---IELTRA-- 208
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
R L G +++ LI+ANLRL V +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 209 -EMRRLMRIEQVGLEAKQALISANLRLTVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 267
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+ P
Sbjct: 268 DYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQDLGRDPT 327
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
E++ +GIT +++ + I++ P+S++ P+ ++D+ D++
Sbjct: 328 PEEIGEEMGITADRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSS 375
>gi|347541209|ref|YP_004848635.1| RNA polymerase sigma-70 subunit RpoD [Pseudogulbenkiania sp. NH8B]
gi|345644388|dbj|BAK78221.1| RNA polymerase, sigma-70 subunit, RpoD [Pseudogulbenkiania sp.
NH8B]
Length = 640
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 112/165 (67%), Gaps = 7/165 (4%)
Query: 314 LSCRDLKS---ELHSGNS----SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
LS +DLK ++ +G S +++++I ANLRLV+ +AK+Y RG+ DL+QEG++GL
Sbjct: 375 LSIKDLKEINRQMSAGESKARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 434
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
MK+V+KF+ + G +F++YA WW+RQ I ++I +RTIR+P ++ ++K+ R +Q
Sbjct: 435 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQ 494
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E H PD +LA R+ + +K+ +++ I++ P+SM+ P+ D D+
Sbjct: 495 ETGHEPDPAELAERMEMPEDKIRKIMKISKEPISMETPIGDDDDS 539
>gi|253827499|ref|ZP_04870384.1| RNA polymerase sigma factor RpoD [Helicobacter canadensis MIT
98-5491]
gi|313141707|ref|ZP_07803900.1| RNA polymerase sigma factor RpoD [Helicobacter canadensis MIT
98-5491]
gi|253510905|gb|EES89564.1| RNA polymerase sigma factor RpoD [Helicobacter canadensis MIT
98-5491]
gi|313130738|gb|EFR48355.1| RNA polymerase sigma factor RpoD [Helicobacter canadensis MIT
98-5491]
Length = 616
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
+ ++ K+ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 374 ADRAKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYA 433
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
WW+RQ I +AI +RTIR+P ++ ++++ + R Y+QE PD + +A VG+ V
Sbjct: 434 TWWIRQAISRAIADQARTIRIPIHMIETINRINKIMRKYLQEEGKEPDIDKIAEEVGLPV 493
Query: 446 EKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+K++ +I IT+ P+S++ P+ +D F F++ G
Sbjct: 494 DKVKNVIKITKEPISLEAPIGNGEDGKF-GDFVEDKG 529
>gi|5921146|dbj|BAA84590.1| RNA polymerase sigma 70 [Helicobacter pylori]
Length = 675
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 434 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 493
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 494 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 553
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 554 KVKNVIKVTKEPISLETPVGNDDDGKF 580
>gi|342218117|ref|ZP_08710743.1| RNA polymerase sigma factor RpoD [Megasphaera sp. UPII 135-E]
gi|341590922|gb|EGS34143.1| RNA polymerase sigma factor RpoD [Megasphaera sp. UPII 135-E]
Length = 428
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 131/223 (58%), Gaps = 28/223 (12%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G + +DP+R++L LL+A+EE L I EK ++
Sbjct: 140 DGINIDDPVRMYLKEIGRVPLLSAEEEITLAKAI--------EKGNMEDA---------- 181
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
++++ +G ++++KL +ANLRLVV +AK+Y GRG+ DL+QEG++GL+K
Sbjct: 182 ----------TEADIKNGITAKKKLTDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLK 231
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+V+KF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R IQE
Sbjct: 232 AVDKFDYSKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRISRQLIQEK 291
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E++A R+ I VE++ ++ I++ P+S++ P+ ++D+
Sbjct: 292 GRDALPEEIAERMEIPVERVREIMKISQEPVSLETPIGEEEDS 334
>gi|54025745|ref|YP_119987.1| RNA polymerase sigma factor SigB [Nocardia farcinica IFM 10152]
gi|54017253|dbj|BAD58623.1| putative principal sigma factor [Nocardia farcinica IFM 10152]
Length = 322
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 132/218 (60%), Gaps = 17/218 (7%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I+ + L +Q L+E +K +
Sbjct: 24 DLVRVYLNGIGRTALLTAADEVELAKRIE---------AGLYAQH-----LLETSKRLSA 69
Query: 315 SCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ + DL + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 70 AKKKDLAMIVRDGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 129
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKR-LYIQEGNHSP 432
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR L+ Q G +
Sbjct: 130 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREAT 189
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
D E+LA GI VEK+ L+ +R P+S+ PV D++
Sbjct: 190 D-EELAAESGIPVEKIADLLDHSRDPVSLDMPVGNDEE 226
>gi|377562738|ref|ZP_09792106.1| RNA polymerase sigma factor SigB [Gordonia sputi NBRC 100414]
gi|377530035|dbj|GAB37271.1| RNA polymerase sigma factor SigB [Gordonia sputi NBRC 100414]
Length = 336
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 136/256 (53%), Gaps = 15/256 (5%)
Query: 226 SKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDL 285
S V + +T SR A ++ L D +R++L G LL A++E EL QI+
Sbjct: 9 STSTVASGDTTPSRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE-- 66
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVA 345
+ + L + RDL + G +R L+ ANLRLVV +A
Sbjct: 67 -----------AGLYAKHVLATRKRLSAAKKRDLTIVVREGEVARAHLLEANLRLVVSLA 115
Query: 346 KQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIR 405
K+Y GRG+ L DL+QEG++GL++++EKF G +F++YA WW+RQ I + + SRTIR
Sbjct: 116 KRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIR 175
Query: 406 LPENIYTLLSKVLEAKR-LYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQP 464
LP ++ ++K+ KR L+ Q G + D E LA GI EK+ L+ +R P+S+ P
Sbjct: 176 LPVHLVEQVNKLARIKRELHQQLGREATDDE-LANESGIPAEKIADLLDHSRDPVSLDMP 234
Query: 465 VWADQDTTFQSTFLDA 480
V +D++ DA
Sbjct: 235 VGSDEEAPLGDFIEDA 250
>gi|420474969|ref|ZP_14973640.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-21]
gi|393093076|gb|EJB93693.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-21]
Length = 680
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 439 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 498
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 499 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 558
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 559 KVKNVIKVTKEPISLETPVGNDDDGKF 585
>gi|420395954|ref|ZP_14895178.1| RNA polymerase sigma factor [Helicobacter pylori CPY1124]
gi|393012166|gb|EJB13349.1| RNA polymerase sigma factor [Helicobacter pylori CPY1124]
Length = 662
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 421 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 480
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 481 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 540
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 541 KVKNVIKVTKEPISLETPVGNDDDGKF 567
>gi|411007263|ref|ZP_11383592.1| RNA polymerase principal sigma factor [Streptomyces globisporus
C-1027]
Length = 363
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 107/163 (65%)
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
DL + G +++ +LI ANLRLVV VAK+Y GRG+++ DL+QEG++GL+++VEKF
Sbjct: 115 DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYAR 174
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G +F++YA WW+RQ + +A+ +RTIR+P ++ L+++V+ +R +QE P ED+
Sbjct: 175 GYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAEDI 234
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
A + +T E++ ++ + + P+S+ PV + D +F D
Sbjct: 235 AVELDLTPERVTEVLRLAQEPVSLHAPVGEEDDVSFGDLIEDG 277
>gi|452819932|gb|EME26982.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 544
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 120/211 (56%), Gaps = 4/211 (1%)
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSGNS 328
L+ +EE ++ QIQ L E+E+ ++ GR PTL EWA+A+G S + ++
Sbjct: 219 LSFEEEVDICNQIQLLRTWERERDRVSELLGRNPTLAEWAEAVGFSDSVEFARKIKGLRE 278
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
S++K+I++NLRLV ++A+ Y G+SL DL+QEGS+GL+K+ E+F G RF SYA WW
Sbjct: 279 SKDKIIHSNLRLVYYIARFYSKYGLSLQDLMQEGSIGLIKAAERFDSSKGFRFGSYAIWW 338
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
++ + +A+ + +R R+P Y +S + E P +E++ + G+T+E+
Sbjct: 339 IKYAMTRALTEQTRHWRIPAYFYEFMSTIRRTDSKLTAELGREPTQEEVFKESGLTIEQF 398
Query: 449 ERLIFITRMPLSMQQPV---WADQDTTFQST 476
+ LS+ P+ + D+ TT T
Sbjct: 399 QTANRCLLHSLSLDSPLSYEYGDKRTTLGDT 429
>gi|322421611|ref|YP_004200834.1| RpoD subfamily RNA polymerase sigma-70 factor [Geobacter sp. M18]
gi|320127998|gb|ADW15558.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacter sp.
M18]
Length = 583
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 106/159 (66%), Gaps = 1/159 (0%)
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
H ++ +L+ ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G +F++
Sbjct: 341 HKAKLAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFST 400
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGI 443
YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A R+ +
Sbjct: 401 YATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMAL 460
Query: 444 TVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++K+ +++ I + P+S++ P+ ++D+ F++ G
Sbjct: 461 PLDKVRKVLKIAKEPISLETPIGEEEDSHL-GDFIEDKG 498
>gi|88607510|ref|YP_505167.1| RNA polymerase sigma factor RpoD [Anaplasma phagocytophilum HZ]
gi|88598573|gb|ABD44043.1| RNA polymerase sigma factor RpoD [Anaplasma phagocytophilum HZ]
Length = 627
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 102/156 (65%)
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
+ N +++++I ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF + G +F++
Sbjct: 385 RTANRAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFST 444
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGI 443
YA WWVRQ I +AI +RTIR+P ++ ++K+ R + E P E+L+ R+ I
Sbjct: 445 YATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEIGREPTLEELSARLNI 504
Query: 444 TVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
VEK+ +++ I + P+S++ P+ D +TF D
Sbjct: 505 NVEKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIED 540
>gi|384915839|ref|ZP_10016044.1| RNA polymerase sigma factor rpoD [Methylacidiphilum fumariolicum
SolV]
gi|384526701|emb|CCG91915.1| RNA polymerase sigma factor rpoD [Methylacidiphilum fumariolicum
SolV]
Length = 625
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 126/219 (57%), Gaps = 20/219 (9%)
Query: 283 QDLIRLEKEKSKLQSQFGREPTLIE-WAKAIGLSCRDLKSELH----------------- 324
Q++++LEKEK L+ G +P E K + L L+ ++H
Sbjct: 319 QEVLKLEKEKEVLEKS-GLDPEAKEKEGKQLSLKVEQLEHQIHLPLDLFKKKHEELKQWL 377
Query: 325 -SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
++ ++ ANLRLV+ +AK+Y RG+S DL+QEG+MGLMK+VEKF+ + G +F++
Sbjct: 378 NEALKAKSCMVEANLRLVISIAKKYSNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFST 437
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGI 443
YA WW+RQ I ++I +RTIR+P ++ ++K++ ++ IQE P E++A +
Sbjct: 438 YATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLIQELGREPTPEEIAEETQM 497
Query: 444 TVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+V+++ +I + + P+S+Q V +DTTF D A
Sbjct: 498 SVDRIRAIIKMAQHPISLQAQVGESEDTTFGDFIEDKAA 536
>gi|420466404|ref|ZP_14965161.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-9]
gi|393084802|gb|EJB85490.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-9]
Length = 679
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 438 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 497
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 498 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 557
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 558 KVKNVIKVTKEPISLETPVGNDDDGKF 584
>gi|291531112|emb|CBK96697.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Eubacterium siraeum 70/3]
Length = 358
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 123/224 (54%), Gaps = 40/224 (17%)
Query: 248 SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE 307
SEG +DP++++L LLTA+EE EL ++
Sbjct: 80 SEGIAIDDPVKIYLKEIGRVPLLTAEEEIELATRMA------------------------ 115
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
+R++L ANLRLVV +AK+Y GRG+ DL+QEG++GL+
Sbjct: 116 ----------------QGDKYARKRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLI 159
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 427
K+VEKF G +F++YA WW+RQ I ++I +RTIR+P ++ ++KV + + E
Sbjct: 160 KAVEKFDYTKGYKFSTYATWWIRQAITRSIADQARTIRIPVHMVETITKVKKVSSQLLHE 219
Query: 428 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
H P +++A R+GITV+++ ++ I++ P+S++ P+ ++D+
Sbjct: 220 NGHEPTPQEIADRLGITVDRVREILRISQDPVSLETPIGEEEDS 263
>gi|197120055|ref|YP_002140482.1| RNA polymerase sigma-70 factor RpoD [Geobacter bemidjiensis Bem]
gi|197089415|gb|ACH40686.1| RNA polymerase sigma-70 factor RpoD [Geobacter bemidjiensis Bem]
Length = 584
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 106/159 (66%), Gaps = 1/159 (0%)
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
H ++ +L+ ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G +F++
Sbjct: 342 HKAKLAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFST 401
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGI 443
YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A R+ +
Sbjct: 402 YATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMAL 461
Query: 444 TVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++K+ +++ I + P+S++ P+ ++D+ F++ G
Sbjct: 462 PLDKVRKVLKIAKEPISLETPIGEEEDSHL-GDFIEDKG 499
>gi|425788721|ref|YP_007016641.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Aklavik117]
gi|425627036|gb|AFX90504.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Aklavik117]
Length = 681
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|420398155|ref|ZP_14897368.1| RNA polymerase sigma factor [Helicobacter pylori CPY1962]
gi|393014829|gb|EJB16000.1| RNA polymerase sigma factor [Helicobacter pylori CPY1962]
Length = 677
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 436 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 495
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 496 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 555
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 556 KVKNVIKVTKEPISLETPVGNDDDGKF 582
>gi|227495524|ref|ZP_03925840.1| sigma factor [Actinomyces coleocanis DSM 15436]
gi|226831071|gb|EEH63454.1| sigma factor [Actinomyces coleocanis DSM 15436]
Length = 505
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 132/227 (58%), Gaps = 12/227 (5%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP++ +L LLTA +E +L +I+ + E K++++ P+ +
Sbjct: 205 TDPVKDYLKQIGKVSLLTAADEVDLARRIEAGLYAE---HKIKTEGDELPSKLR------ 255
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
R+L+ +H G S+ L+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 256 ---RELQILVHDGQLSKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 312
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I +A+ +RTIR+P ++ +++K+ +R +Q+ P
Sbjct: 313 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPT 372
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E+LA+ + +T EK+ + R P+S+ P+ D D+ F D+
Sbjct: 373 PEELAKELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDS 419
>gi|296393377|ref|YP_003658261.1| RpoD subfamily RNA polymerase sigma-70 factor [Segniliparus
rotundus DSM 44985]
gi|296180524|gb|ADG97430.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Segniliparus
rotundus DSM 44985]
Length = 377
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 125/231 (54%), Gaps = 19/231 (8%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---KEKSKLQSQFGREPTLIEWAKA 311
D +R++L G LLTA +E EL I+ + E K L Q RE
Sbjct: 79 DLVRVYLNGIGRTALLTAADEVELAKSIEAGLYAEHLLKTSDNLTPQRRRE--------- 129
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
LK+ G ++R L+ ANLRLVV +AK+Y GRGI L DL+QEG++GL++++E
Sbjct: 130 -------LKTVARDGQAARTHLLEANLRLVVSLAKRYTGRGIPLLDLIQEGNLGLIRAME 182
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHS 431
KF G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q+
Sbjct: 183 KFDYAKGFKFSTYATWWIRQAITRGVADQSRTIRLPVHLVEQVNKLSRIKRELHQQLGRE 242
Query: 432 PDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
E+L+R GI ++ L+ +R P+S+ PV AD++ D+ G
Sbjct: 243 ATSEELSRETGIPEHRIADLLDHSRDPVSLDMPVGADEEAPLGDFIEDSEG 293
>gi|384887129|ref|YP_005761640.1| sigma 70 (RpoD) [Helicobacter pylori 52]
gi|261838959|gb|ACX98724.1| sigma 70 (RpoD) [Helicobacter pylori 52]
Length = 685
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 103/148 (69%)
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 443 SDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYA 502
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG+++
Sbjct: 503 TWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSL 562
Query: 446 EKLERLIFITRMPLSMQQPVWADQDTTF 473
+K++ +I +T+ P+S++ PV D D F
Sbjct: 563 DKVKNVIKVTKEPISLETPVGNDDDGKF 590
>gi|404420807|ref|ZP_11002540.1| RNA polymerase sigma factor SigB [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403659675|gb|EJZ14305.1| RNA polymerase sigma factor SigB [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 319
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 126/217 (58%), Gaps = 15/217 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L+ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLNTKKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 NRKRDLATVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q
Sbjct: 127 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREAT 186
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
E+LA GI VEK+ L+ +R P+S+ PV D++
Sbjct: 187 DEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEE 223
>gi|339627021|ref|YP_004718664.1| RpoD subfamily RNA polymerase sigma-70 factor [Sulfobacillus
acidophilus TPY]
gi|379008595|ref|YP_005258046.1| RNA polymerase sigma-70 subunit RpoD [Sulfobacillus acidophilus DSM
10332]
gi|339284810|gb|AEJ38921.1| RNA polymerase, sigma 70 subunit, RpoD family [Sulfobacillus
acidophilus TPY]
gi|361054857|gb|AEW06374.1| RNA polymerase, sigma 70 subunit, RpoD [Sulfobacillus acidophilus
DSM 10332]
Length = 369
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 125/225 (55%), Gaps = 40/225 (17%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
+ +G +DP+R++L LLTA+EE EL +I+
Sbjct: 90 IPDGVAIDDPVRMYLKEIGRVPLLTAEEEVELAKRIE----------------------- 126
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
++ KL ANLRLVV +AK+Y GRG+ DL+QEG++GL
Sbjct: 127 -----------------AGDEEAKRKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 169
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
+K+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q
Sbjct: 170 IKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQ 229
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E P E++A+ +GITVE++ ++ + + P+S++ P+ ++D+
Sbjct: 230 EYGREPLPEEIAKEMGITVERVREILKVAQEPVSLETPIGEEEDS 274
>gi|239987439|ref|ZP_04708103.1| putative RNA polymerase principal sigma factor [Streptomyces
roseosporus NRRL 11379]
Length = 363
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 107/163 (65%)
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
DL + G +++ +LI ANLRLVV VAK+Y GRG+++ DL+QEG++GL+++VEKF
Sbjct: 115 DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYAR 174
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G +F++YA WW+RQ + +A+ +RTIR+P ++ L+++V+ +R +QE P ED+
Sbjct: 175 GYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAEDI 234
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
A + +T E++ ++ + + P+S+ PV + D +F D
Sbjct: 235 AVELDLTPERVTEVLRLAQEPVSLHAPVGEEDDVSFGDLIEDG 277
>gi|317506478|ref|ZP_07964279.1| sigma-70 protein [Segniliparus rugosus ATCC BAA-974]
gi|316255239|gb|EFV14508.1| sigma-70 protein [Segniliparus rugosus ATCC BAA-974]
Length = 348
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 132/242 (54%), Gaps = 17/242 (7%)
Query: 245 KKLSEGFDRNDP----LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
++L E D P +R++L G LLTA++E L I+ + E + + G
Sbjct: 36 ERLQEDLDTQSPAADLVRVYLNGIGRTALLTAEDEVTLAKSIEAGLYAEH---LINTSEG 92
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
P R+LK+ + G ++R L+ ANLRLVV +AK+Y GRGI L DL+Q
Sbjct: 93 LTPQ----------RRRELKAVVRDGRAARTHLLEANLRLVVSLAKRYTGRGIPLLDLIQ 142
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEA 420
EG++GL++++EKF G +F++YA WW+RQ I + + SRTIRLP ++ ++K+
Sbjct: 143 EGNLGLIRAMEKFDYSKGFKFSTYATWWIRQAITRGVADQSRTIRLPVHLVEQVNKLSRI 202
Query: 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
KR Q+ E+L+R GI ++ L+ +R P+S+ PV AD++ D+
Sbjct: 203 KRELHQQLGREATSEELSRETGIPEHRIADLLDHSRDPVSLDMPVGADEEAPLGDFIEDS 262
Query: 481 AG 482
G
Sbjct: 263 EG 264
>gi|210134292|ref|YP_002300731.1| RNA polymerase sigma factor RpoD [Helicobacter pylori P12]
gi|210132260|gb|ACJ07251.1| RNA polymerase sigma-80 factor [Helicobacter pylori P12]
Length = 680
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 439 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 498
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 499 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 558
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 559 KVKNVIKVTKEPISLETPVGNDDDGKF 585
>gi|167750934|ref|ZP_02423061.1| hypothetical protein EUBSIR_01919 [Eubacterium siraeum DSM 15702]
gi|167656113|gb|EDS00243.1| RNA polymerase sigma factor RpoD [Eubacterium siraeum DSM 15702]
gi|291557421|emb|CBL34538.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Eubacterium siraeum
V10Sc8a]
Length = 358
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 123/224 (54%), Gaps = 40/224 (17%)
Query: 248 SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE 307
SEG +DP++++L LLTA+EE EL ++
Sbjct: 80 SEGIAIDDPVKIYLKEIGRVPLLTAEEEIELATRMA------------------------ 115
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
+R++L ANLRLVV +AK+Y GRG+ DL+QEG++GL+
Sbjct: 116 ----------------QGDKYARKRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLI 159
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 427
K+VEKF G +F++YA WW+RQ I ++I +RTIR+P ++ ++KV + + E
Sbjct: 160 KAVEKFDYTKGYKFSTYATWWIRQAITRSIADQARTIRIPVHMVETITKVKKVSSQLLHE 219
Query: 428 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
H P +++A R+GITV+++ ++ I++ P+S++ P+ ++D+
Sbjct: 220 NGHEPTPQEIADRLGITVDRVREILRISQDPVSLETPIGEEEDS 263
>gi|408411647|ref|ZP_11182785.1| RNA polymerase sigma factor [Lactobacillus sp. 66c]
gi|407874195|emb|CCK84591.1| RNA polymerase sigma factor [Lactobacillus sp. 66c]
Length = 389
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 40/235 (17%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
N KA ++ + G NDP+R +L LLT +EE EL +I+
Sbjct: 100 NVEKAELENLAAPGSRMNDPVRQYLKRIGRVNLLTGNEEVELAKRIE------------- 146
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
++E+L NANLRLVV +AK+Y GRG+S
Sbjct: 147 ---------------------------AGDEEAKEELTNANLRLVVSIAKRYVGRGMSFL 179
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSK 416
DL+QEG+MGLMK+V+KF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K
Sbjct: 180 DLIQEGNMGLMKAVDKFDYRLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 239
Query: 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
++ +R +Q+ P E++A + + V+K+ ++ + + P+S++ P+ + D+
Sbjct: 240 LIRIQRQLLQDLGRDPQPEEIAAEMDLPVKKVREILKVAQEPVSLETPIGEEDDS 294
>gi|420454635|ref|ZP_14953465.1| RNA polymerase sigma factor [Helicobacter pylori Hp A-14]
gi|393072985|gb|EJB73759.1| RNA polymerase sigma factor [Helicobacter pylori Hp A-14]
Length = 679
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 438 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 497
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 498 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 557
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 558 KVKNVIKVTKEPISLETPVGNDDDGKF 584
>gi|343924623|ref|ZP_08764167.1| RNA polymerase sigma factor SigB [Gordonia alkanivorans NBRC 16433]
gi|404258486|ref|ZP_10961805.1| RNA polymerase sigma factor SigB [Gordonia namibiensis NBRC 108229]
gi|409390116|ref|ZP_11241887.1| RNA polymerase sigma factor SigB [Gordonia rubripertincta NBRC
101908]
gi|343765423|dbj|GAA11093.1| RNA polymerase sigma factor SigB [Gordonia alkanivorans NBRC 16433]
gi|403199943|dbj|GAB85121.1| RNA polymerase sigma factor SigB [Gordonia rubripertincta NBRC
101908]
gi|403403000|dbj|GAC00215.1| RNA polymerase sigma factor SigB [Gordonia namibiensis NBRC 108229]
Length = 338
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 130/227 (57%), Gaps = 15/227 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL QI+ + L ++ L +
Sbjct: 40 DLVRVYLNGIGRTALLNAEQEVELAKQIE---------AGLYAKH----VLATKKRLSAT 86
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 87 KKRDLATIVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 146
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKR-LYIQEGNHSPD 433
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR L+ Q G + D
Sbjct: 147 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATD 206
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E+LA GI EK+ L+ +R P+S+ PV +D++ DA
Sbjct: 207 -EELANESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDA 252
>gi|42526854|ref|NP_971952.1| RNA polymerase sigma factor RpoD [Treponema denticola ATCC 35405]
gi|449112083|ref|ZP_21748638.1| RNA polymerase sigma factor RpoD [Treponema denticola ATCC 33521]
gi|449113113|ref|ZP_21749628.1| RNA polymerase sigma factor RpoD [Treponema denticola ATCC 35404]
gi|449126086|ref|ZP_21762380.1| RNA polymerase sigma factor RpoD [Treponema denticola OTK]
gi|41817169|gb|AAS11863.1| RNA polymerase sigma-70 factor family protein [Treponema denticola
ATCC 35405]
gi|448938800|gb|EMB19727.1| RNA polymerase sigma factor RpoD [Treponema denticola OTK]
gi|448956364|gb|EMB37125.1| RNA polymerase sigma factor RpoD [Treponema denticola ATCC 33521]
gi|448960693|gb|EMB41402.1| RNA polymerase sigma factor RpoD [Treponema denticola ATCC 35404]
Length = 619
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 134/216 (62%), Gaps = 17/216 (7%)
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN-- 327
++A+E ++ QIQ L R + K++ F E T+ E DL SE+ +G
Sbjct: 331 ISANEVKDIYTQIQVLTR---KIRKIEYDF--EATVDEVI--------DLTSEIKNGQRM 377
Query: 328 --SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
++++KLINANLRLVV +AK+Y RG+ DL+QEG++GL+K+VEKF+ + G +F++YA
Sbjct: 378 LKNAKDKLINANLRLVVSIAKKYINRGLQFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYA 437
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
WW+RQ I ++I +RTIR+P ++ ++KV R +Q+ P+ +++A ++G ++
Sbjct: 438 TWWIRQAITRSISDQARTIRVPVHMIEQINKVNRESRQLMQKLGREPNDDEIALQLGWSI 497
Query: 446 EKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
EK++++ + R P+S++ P+ ++DT D
Sbjct: 498 EKVKQVKNVAREPISLETPIGEEEDTLLGDLIEDKG 533
>gi|384888744|ref|YP_005763046.1| RNA polymerase sigma factor RpoD [Helicobacter pylori v225d]
gi|297379310|gb|ADI34197.1| RNA polymerase sigma factor RpoD [Helicobacter pylori v225d]
Length = 677
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 436 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 495
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 496 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 555
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 556 KVKNVIKVTKEPISLETPVGNDDDGKF 582
>gi|222053802|ref|YP_002536164.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacter daltonii
FRC-32]
gi|221563091|gb|ACM19063.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacter
daltonii FRC-32]
Length = 586
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 106/159 (66%), Gaps = 1/159 (0%)
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
H ++ +L+ ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G +F++
Sbjct: 344 HKAKLAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFST 403
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGI 443
YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A R+ +
Sbjct: 404 YATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMSL 463
Query: 444 TVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++K+ +++ I + P+S++ P+ ++D+ F++ G
Sbjct: 464 PLDKVRKVLKIAKEPISLETPIGEEEDSHL-GDFIEDKG 501
>gi|420505519|ref|ZP_15004035.1| RNA polymerase sigma factor [Helicobacter pylori Hp P-74]
gi|393117051|gb|EJC17555.1| RNA polymerase sigma factor [Helicobacter pylori Hp P-74]
Length = 679
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 438 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 497
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 498 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 557
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 558 KVKNVIKVTKEPISLETPVGNDDDGKF 584
>gi|317132028|ref|YP_004091342.1| RpoD subfamily RNA polymerase sigma-70 subunit [Ethanoligenens
harbinense YUAN-3]
gi|315470007|gb|ADU26611.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ethanoligenens
harbinense YUAN-3]
Length = 372
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 113/179 (63%), Gaps = 15/179 (8%)
Query: 298 QFGREPTL-----IEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
+ GR P L IE AK +G ++R++L ANLRLVV +AK+Y GRG
Sbjct: 109 EIGRVPLLSGEEEIELAKRMG----------EGDVAARKRLSEANLRLVVSIAKRYVGRG 158
Query: 353 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYT 412
+ DL+QEG++GL+K+VEKF G +F++YA WW+RQ I +AI +RTIR+P ++
Sbjct: 159 MQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVE 218
Query: 413 LLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
++KV+ +R +QE P E++A +G++V+K+ ++ + + P+S++ P+ ++D+
Sbjct: 219 TINKVVRVERQLLQELGRQPQAEEIAELMGMSVDKVREIMKVAQEPVSLETPIGEEEDS 277
>gi|254514875|ref|ZP_05126936.1| RNA polymerase sigma factor RpoS [gamma proteobacterium NOR5-3]
gi|219677118|gb|EED33483.1| RNA polymerase sigma factor RpoS [gamma proteobacterium NOR5-3]
Length = 367
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 102/155 (65%)
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++R+++I +NLRLVV++A++Y RG+SL DL++EG++GLM++VEKF P+ G RF++YA W
Sbjct: 126 AARKRMIESNLRLVVNIARRYLHRGMSLLDLIEEGNLGLMRAVEKFDPERGFRFSTYATW 185
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQTI + I +RTIRLP ++ L+ L A R Q+ +H P +++A R T +
Sbjct: 186 WIRQTIERGIMNQARTIRLPIHVVKDLNGCLRAARELTQQLDHDPTTQEIASRTHKTATE 245
Query: 448 LERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+ RL+ + SM P+ + D++ T D G
Sbjct: 246 VSRLMGLNERVSSMDAPLGPNSDSSVAETIADEHG 280
>gi|15644718|ref|NP_206888.1| RNA polymerase sigma factor RpoD [Helicobacter pylori 26695]
gi|410023322|ref|YP_006892575.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Rif1]
gi|410501091|ref|YP_006935618.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Rif2]
gi|410681608|ref|YP_006934010.1| RNA polymerase sigma factor RpoD [Helicobacter pylori 26695]
gi|419416114|ref|ZP_13956698.1| RNA polymerase sigma factor RpoD [Helicobacter pylori P79]
gi|2500785|sp|P55993.1|RPOD_HELPY RecName: Full=RNA polymerase sigma factor RpoD; AltName:
Full=Sigma-70
gi|2313167|gb|AAD07156.1| RNA polymerase sigma-70 factor (rpoD) [Helicobacter pylori 26695]
gi|384375677|gb|EIE30945.1| RNA polymerase sigma factor RpoD [Helicobacter pylori P79]
gi|409893249|gb|AFV41307.1| RNA polymerase sigma factor RpoD [Helicobacter pylori 26695]
gi|409894979|gb|AFV42901.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Rif1]
gi|409896642|gb|AFV44496.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Rif2]
Length = 671
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 430 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 489
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 490 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 549
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 550 KVKNVIKVTKEPISLETPVGNDDDGKF 576
>gi|409358553|ref|ZP_11236916.1| RNA polymerase sigma factor SigB [Dietzia alimentaria 72]
Length = 322
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 130/227 (57%), Gaps = 15/227 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG- 313
D +R++L G LL A++E EL +I+ + L +Q ++ K IG
Sbjct: 24 DLVRVYLNGIGKTALLKAEDEVELSKRIE---------AGLYAQH-----ILATKKRIGP 69
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ DLK+ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 70 VRKSDLKAVVAEGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 129
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q+
Sbjct: 130 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREST 189
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
++LA GI K+E L+ +R P+S+ PV AD++ DA
Sbjct: 190 LDELAEESGIPAHKIEELLDHSRDPVSLDMPVGADEEAPLGDFIEDA 236
>gi|308182264|ref|YP_003926391.1| RNA polymerase sigma factor RpoD [Helicobacter pylori PeCan4]
gi|308064449|gb|ADO06341.1| RNA polymerase sigma factor RpoD [Helicobacter pylori PeCan4]
Length = 682
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 441 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 500
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 501 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 560
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 561 KVKNVIKVTKEPISLETPVGNDDDGKF 587
>gi|304437692|ref|ZP_07397644.1| DNA-directed RNA polymerase sigma subunit SigA [Selenomonas sp.
oral taxon 149 str. 67H29BP]
gi|304369325|gb|EFM22998.1| DNA-directed RNA polymerase sigma subunit SigA [Selenomonas sp.
oral taxon 149 str. 67H29BP]
Length = 381
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 112/175 (64%), Gaps = 7/175 (4%)
Query: 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLH 356
+ GR P L + DL + +G+ ++R +L ANLRLVV +AK+Y GRG+
Sbjct: 117 EIGRVPLLTAEEEV------DLARRMEAGDETARHRLEEANLRLVVSIAKRYVGRGMMFL 170
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSK 416
DL+QEG++GL+K+VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K
Sbjct: 171 DLIQEGNLGLLKAVEKFDYSKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK 230
Query: 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+ R +QE P E++A R+G++V ++ ++ I++ P+S++ P+ ++DT
Sbjct: 231 YIRVSRQLLQELGRDPTPEEIAHRMGLSVARVREIMKISQEPVSLETPIGEEEDT 285
>gi|291439967|ref|ZP_06579357.1| transcription initiation factor sigma [Streptomyces ghanaensis ATCC
14672]
gi|291342862|gb|EFE69818.1| transcription initiation factor sigma [Streptomyces ghanaensis ATCC
14672]
Length = 335
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 130/238 (54%), Gaps = 19/238 (7%)
Query: 246 KLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI---RLEKEKSKLQSQFGRE 302
+LS D ++ +L +LLTA++E EL +I+ + RL E+ L+ ++ RE
Sbjct: 26 RLSSDLGTADQVKDYLRLISRVRLLTAEQEVELAKRIEAGLYAERLLAEEPVLEPRYRRE 85
Query: 303 PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEG 362
+GL D G ++ L ANLRLVV VAK+Y GRG+ DL+QEG
Sbjct: 86 ---------LGLLAED-------GRRAKNHLTEANLRLVVSVAKRYTGRGLQFMDLIQEG 129
Query: 363 SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKR 422
+ GL+++VEKF G +F++YA WW++Q I +A+ SRTIR+P + ++++V +R
Sbjct: 130 NAGLIRAVEKFDYTKGFKFSTYATWWIKQGITRAMADQSRTIRIPVHAVEVINRVARVRR 189
Query: 423 LYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
I+ P ED+A R I+VEKL L R P+S+ P+ + F +D+
Sbjct: 190 ELIRATGTEPTPEDVAERASISVEKLAELDAYAREPVSLDLPLSEEGGGEFGDLIVDS 247
>gi|421713585|ref|ZP_16152916.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R32b]
gi|407216951|gb|EKE86788.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R32b]
Length = 675
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 434 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 493
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 494 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 553
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 554 KVKNVIKVTKEPISLETPVGNDDDGKF 580
>gi|384892085|ref|YP_005766178.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Cuz20]
gi|308061382|gb|ADO03270.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Cuz20]
Length = 672
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 431 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 490
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 491 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 550
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 551 KVKNVIKVTKEPISLETPVGNDDDGKF 577
>gi|387781786|ref|YP_005792499.1| transcription initiation factor sigma-80 [Helicobacter pylori 51]
gi|261837545|gb|ACX97311.1| transcription initiation factor sigma-80 [Helicobacter pylori 51]
Length = 684
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 443 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 502
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 503 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 562
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 563 KVKNVIKVTKEPISLETPVGNDDDGKF 589
>gi|420403236|ref|ZP_14902422.1| RNA polymerase sigma factor [Helicobacter pylori CPY6261]
gi|393020402|gb|EJB21541.1| RNA polymerase sigma factor [Helicobacter pylori CPY6261]
Length = 671
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 430 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 489
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 490 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 549
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 550 KVKNVIKVTKEPISLETPVGNDDDGKF 576
>gi|420396823|ref|ZP_14896041.1| RNA polymerase sigma factor [Helicobacter pylori CPY1313]
gi|393012485|gb|EJB13663.1| RNA polymerase sigma factor [Helicobacter pylori CPY1313]
Length = 661
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 420 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 479
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 480 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 539
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 540 KVKNVIKVTKEPISLETPVGNDDDGKF 566
>gi|375142610|ref|YP_005003259.1| sigma-70 family RNA polymerase sigma factor [Mycobacterium
rhodesiae NBB3]
gi|359823231|gb|AEV76044.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
rhodesiae NBB3]
Length = 319
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 129/227 (56%), Gaps = 15/227 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L+ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLATRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q
Sbjct: 127 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREAT 186
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E+LA GI VEK+ L+ +R P+S+ PV +D++ DA
Sbjct: 187 DEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDA 233
>gi|384896828|ref|YP_005772256.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Lithuania75]
gi|317011933|gb|ADU82541.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Lithuania75]
Length = 680
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 439 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 498
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 499 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 558
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 559 KVKNVIKVTKEPISLETPVGNDDDGKF 585
>gi|297625160|ref|YP_003706594.1| RpoD subfamily RNA polymerase sigma-70 subunit [Truepera
radiovictrix DSM 17093]
gi|297166340|gb|ADI16051.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Truepera
radiovictrix DSM 17093]
Length = 446
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 158/310 (50%), Gaps = 50/310 (16%)
Query: 176 EAASLAENPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHET 235
E A LAE+ L+ EF ++ L P +E+ V + E
Sbjct: 90 EIADLAEDEVLDEDEFDEVDALGDLDEPEDEL----------------------VRDREE 127
Query: 236 YNSR-KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQD----LIRLEK 290
+R +A +LS NDP+R +L LLT +EE L +I++ RL++
Sbjct: 128 IEARAEAMAGSRLS----TNDPVRQYLHEIGRVSLLTLEEEISLARRIEEGEAAQKRLDE 183
Query: 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG 350
E L + R LK + G +R+ LI ANLRLVV +AK+Y G
Sbjct: 184 EGDSLPER----------------EQRALKRIVEDGEMARQHLIEANLRLVVSIAKKYTG 227
Query: 351 RGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENI 410
RG+S DL+QEG+ GL+++VEKF+ + +F++YA WW+RQ I +AI +RTIR+P ++
Sbjct: 228 RGLSFLDLIQEGNQGLIRAVEKFEYRRRYKFSTYATWWIRQAINRAIADQARTIRIPVHM 287
Query: 411 YTLLSKVLEAKRLYIQEGNHSPDKEDLARRV--GITVEKLERLIFITRMPLSMQQPVWAD 468
++K+ R QE + P E++A + G + EK+E + +++ P+S++ P+ D
Sbjct: 288 VETINKLTRTARQLQQELSREPSYEEVAEAMGPGWSAEKVEEVFKVSQEPVSLETPI-GD 346
Query: 469 QDTTFQSTFL 478
+ +F F+
Sbjct: 347 EKDSFYGDFI 356
>gi|421716149|ref|ZP_16155461.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R037c]
gi|407222047|gb|EKE91850.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R037c]
Length = 676
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 435 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 494
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 495 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 554
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 555 KVKNVIKVTKEPISLETPVGNDDDGKF 581
>gi|220927994|ref|YP_002504903.1| RNA polymerase sigma factor RpoD [Clostridium cellulolyticum H10]
gi|219998322|gb|ACL74923.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
cellulolyticum H10]
Length = 359
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 42/224 (18%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
EG +DP+R++L LLTADEE
Sbjct: 82 EGVSIDDPVRMYLKEIGKVPLLTADEEI-------------------------------- 109
Query: 309 AKAIGLSCRDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
DL + +G+ ++ +L ANLRLVV +AK+Y GRG+ DL+QEG++GL+
Sbjct: 110 ---------DLAHRMENGDIEAKRRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLI 160
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 427
K+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE
Sbjct: 161 KAVEKFDYRRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQE 220
Query: 428 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
P +++A+ +G++V+K+ ++ I++ P+S++ P+ ++D+
Sbjct: 221 LGREPQPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDS 264
>gi|385215367|ref|YP_005775323.1| RNA polymerase sigma factor RpoD [Helicobacter pylori F32]
gi|317179895|dbj|BAJ57681.1| RNA polymerase sigma factor RpoD [Helicobacter pylori F32]
Length = 671
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 430 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 489
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 490 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 549
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 550 KVKNVIKVTKEPISLETPVGNDDDGKF 576
>gi|456969936|gb|EMG10820.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 336
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 131/211 (62%), Gaps = 17/211 (8%)
Query: 265 ETRKLLTADEEFELIAQIQD----LIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
E + + DE E+I I++ L R+E+E + +W + I R++
Sbjct: 43 EVKMGVNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIK------DWGEKIIKGEREI- 95
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
+ ++++L+ ANLRLVV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +
Sbjct: 96 ------SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYK 149
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 440
F++YA WW+RQ I +AI +RTIR+P ++ ++KV+ RL+IQE P+ E++A R
Sbjct: 150 FSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAER 209
Query: 441 VGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+G V+K++ + + R P+S++ PV +++D+
Sbjct: 210 LGWPVQKVKMVKNVAREPISLEIPVGSEEDS 240
>gi|386753598|ref|YP_006226816.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Shi112]
gi|384559856|gb|AFI00323.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Shi112]
Length = 672
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 431 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 490
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 491 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 550
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 551 KVKNVIKVTKEPISLETPVGNDDDGKF 577
>gi|385224783|ref|YP_005784708.1| DNA-directed RNA polymerase sigma subunit RpoD [Helicobacter pylori
83]
gi|332672929|gb|AEE69746.1| DNA-directed RNA polymerase sigma subunit RpoD [Helicobacter pylori
83]
Length = 674
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 433 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 492
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 493 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 552
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 553 KVKNVIKVTKEPISLETPVGNDDDGKF 579
>gi|257066626|ref|YP_003152882.1| RpoD subfamily RNA polymerase sigma-70 subunit [Anaerococcus
prevotii DSM 20548]
gi|256798506|gb|ACV29161.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anaerococcus
prevotii DSM 20548]
Length = 602
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 106/154 (68%)
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
DL+ + + +++KL NLRLVV +AK+Y GRG+S DL+QEG+MGLMK+V+K+
Sbjct: 355 DLRRAVLNSKRAKKKLAETNLRLVVSIAKKYVGRGMSFLDLIQEGNMGLMKAVDKYDYNR 414
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+ P E++
Sbjct: 415 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLVQDLGRDPSNEEI 474
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
A ++G+ VEK++ + I++ P+S++ P+ + D+
Sbjct: 475 AEQMGLEVEKVQEIRKISQEPVSLETPIGEEDDS 508
>gi|456983033|gb|EMG19441.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Copenhageni str. LT2050]
Length = 477
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 131/211 (62%), Gaps = 17/211 (8%)
Query: 265 ETRKLLTADEEFELIAQIQD----LIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
E + + DE E+I I++ L R+E+E + +W + I R++
Sbjct: 184 EVKMGVNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIK------DWGEKIIKGEREI- 236
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
+ ++++L+ ANLRLVV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +
Sbjct: 237 ------SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYK 290
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 440
F++YA WW+RQ I +AI +RTIR+P ++ ++KV+ RL+IQE P+ E++A R
Sbjct: 291 FSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAER 350
Query: 441 VGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+G V+K++ + + R P+S++ PV +++D+
Sbjct: 351 LGWPVQKVKMVKNVAREPISLEIPVGSEEDS 381
>gi|33866957|ref|NP_898516.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
gi|33639558|emb|CAE08942.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
Length = 467
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 134/269 (49%), Gaps = 42/269 (15%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELI--------------------AQIQDLIRLEKEKS 293
D LRL+L LLT +EE L A I +L RLE+ +
Sbjct: 110 TDLLRLYLQDIGRVDLLTNEEEVTLARLVQRREALLQQQRDLATSDAAIGELYRLEELQR 169
Query: 294 KLQSQFGREPTLIEWAKAIGLS----------------------CRDLKSELHSGNSSRE 331
+ +Q PT EWA+A LS R+LK+ L +G +++
Sbjct: 170 REANQHSHWPTKQEWARAAHLSLAELQQRIEAGYGAWAREANLEARELKTALRNGRRAKD 229
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
+I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+RQ
Sbjct: 230 HMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQ 289
Query: 392 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451
+ +AI SRTIRLP ++ L+++ A++ DLAR + ++ + + +
Sbjct: 290 GMTRAIATQSRTIRLPVHVTEKLNRIKRAQQEIATNEGRIASIADLARALKLSEDTVRQT 349
Query: 452 IFITRMPLSMQQPVWADQDTTFQSTFLDA 480
+ +S+ V DQDT D
Sbjct: 350 LARVPRSVSLDTRVGRDQDTQLGDLIEDG 378
>gi|420436494|ref|ZP_14935487.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-28]
gi|393054805|gb|EJB55729.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-28]
Length = 666
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 425 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 484
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 485 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 544
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 545 KVKNVIKVTKEPISLETPVGNDDDGKF 571
>gi|420411436|ref|ZP_14910568.1| RNA polymerase sigma factor [Helicobacter pylori NQ4228]
gi|393030225|gb|EJB31304.1| RNA polymerase sigma factor [Helicobacter pylori NQ4228]
Length = 686
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 445 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 504
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 505 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 564
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 565 KVKNVIKVTKEPISLETPVGNDDDGKF 591
>gi|375293289|ref|YP_005127828.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae INCA
402]
gi|376254504|ref|YP_005142963.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae PW8]
gi|371582960|gb|AEX46626.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae INCA
402]
gi|372117588|gb|AEX70058.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae PW8]
Length = 329
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 125/216 (57%), Gaps = 12/216 (5%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL I+ L +++ E + +A+
Sbjct: 30 DLVRVYLNGIGKTALLNAEDEVELAQTIE---------VGLYAEYLLENSQEPLTRAM-- 78
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDLK + G +R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 79 -KRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q+
Sbjct: 138 YSKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATN 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
E+LA GI K+E L+ +R P+S+ PV AD++
Sbjct: 198 EELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEE 233
>gi|319957164|ref|YP_004168427.1| RNA polymerase, sigma 70 subunit, rpod [Nitratifractor salsuginis
DSM 16511]
gi|319419568|gb|ADV46678.1| RNA polymerase, sigma 70 subunit, RpoD [Nitratifractor salsuginis
DSM 16511]
Length = 618
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 102/145 (70%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ ++ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G +F++YA WW
Sbjct: 379 AKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWW 438
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIR+P ++ ++++ + R ++QE PD E +A VG++V+K+
Sbjct: 439 IRQAISRAIADQARTIRIPIHMIETINRINKIIRKHLQETGKEPDLETIAEEVGLSVDKV 498
Query: 449 ERLIFITRMPLSMQQPVWADQDTTF 473
+ +I IT+ P+S++ PV + D F
Sbjct: 499 KNVIKITKEPVSLETPVGDEDDGRF 523
>gi|313893234|ref|ZP_07826811.1| RNA polymerase sigma factor RpoD [Veillonella sp. oral taxon 158
str. F0412]
gi|313442587|gb|EFR61002.1| RNA polymerase sigma factor RpoD [Veillonella sp. oral taxon 158
str. F0412]
Length = 386
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 132/244 (54%), Gaps = 28/244 (11%)
Query: 228 PQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIR 287
P+ E + + S+ + G + +DP+R++L LL+ADEE L QI
Sbjct: 77 PEEDAEEVVSEKSISIDLSVDSGVNIDDPVRMYLKEIGRVPLLSADEEIVLAKQI----- 131
Query: 288 LEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQ 347
E A + +D++ + ++ANLRLVV +AK+
Sbjct: 132 -------------------EAGAAEDATYKDIQLAKKAKKKL----VDANLRLVVSIAKR 168
Query: 348 YQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
Y GRG+ DL+QEG++GL+K+V+KF G +F++YA WW+RQ I +AI +RTIR+P
Sbjct: 169 YVGRGMLFLDLIQEGNLGLIKAVDKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIP 228
Query: 408 ENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWA 467
++ ++K++ R +Q+ P E++A +GITVE++ + I + P+S++ P+
Sbjct: 229 VHMVETINKLIRISRQLLQDKGREPLPEEIAEGMGITVERVREIQKIAQEPVSLETPIGE 288
Query: 468 DQDT 471
++D+
Sbjct: 289 EEDS 292
>gi|420406222|ref|ZP_14905393.1| RNA polymerase sigma factor [Helicobacter pylori CPY6311]
gi|393024243|gb|EJB25354.1| RNA polymerase sigma factor [Helicobacter pylori CPY6311]
Length = 675
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 434 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 493
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 494 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 553
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 554 KVKNVIKVTKEPISLETPVGNDDDGKF 580
>gi|289450258|ref|YP_003475183.1| RNA polymerase sigma factor RpoD [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289184805|gb|ADC91230.1| RNA polymerase sigma factor RpoD [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 353
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 110/156 (70%), Gaps = 1/156 (0%)
Query: 317 RDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
+DL + G+ ++++L ANLRLVV +AK+Y GRG+ DL+QEG++GL+K+V+KF
Sbjct: 103 KDLARAMKEGSQEAKDRLCEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVDKFDY 162
Query: 376 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKE 435
+ G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +QE P+ E
Sbjct: 163 EKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQELGREPEVE 222
Query: 436 DLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+LA+ +GI+ EK+ + I++ P+S+++P+ ++D+
Sbjct: 223 ELAQEMGISPEKVREIQKISQEPVSLEKPIGEEEDS 258
>gi|208434051|ref|YP_002265717.1| RNA polymerase sigma factor RpoD [Helicobacter pylori G27]
gi|208431980|gb|ACI26851.1| RNA polymerase sigma-80 factor [Helicobacter pylori G27]
Length = 682
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 441 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 500
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 501 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 560
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 561 KVKNVIKVTKEPISLETPVGNDDDGKF 587
>gi|121534199|ref|ZP_01666024.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermosinus
carboxydivorans Nor1]
gi|121307302|gb|EAX48219.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermosinus
carboxydivorans Nor1]
Length = 368
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 138/240 (57%), Gaps = 15/240 (6%)
Query: 233 HETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
+E +NS+ + ++ P L P+ ++ A EE ++ I + I ++
Sbjct: 48 YEVFNSKGIEIVDEI--------PDVETLEDPDITEIEAAPEEVDIDLSIPEGISIDDPV 99
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS-SREKLINANLRLVVHVAKQYQGR 351
+ GR P L+ + I L+ R + G+ ++ +L ANLRLVV +AK+Y GR
Sbjct: 100 RMYLKEIGRVP-LLTAEEEIQLAKR-----MEQGDEEAKRRLAEANLRLVVSIAKRYVGR 153
Query: 352 GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIY 411
G+ DL+QEG++GL+K+VEKF G +F++YA WW+RQ I +AI +RTIR+P ++
Sbjct: 154 GMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMV 213
Query: 412 TLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
++K++ R +QE P E++AR + I+VE++ ++ I + P+S++ P+ ++D+
Sbjct: 214 ETINKLIRVSRQLLQEKGREPTPEEIAREMDISVERVREIMKIAQEPVSLETPIGEEEDS 273
>gi|295839080|ref|ZP_06826013.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. SPB74]
gi|295827312|gb|EDY44634.2| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. SPB74]
Length = 360
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 107/163 (65%)
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
DL + G +++ +LI +NLRLVV VAK+Y GRG+++ DL+QEG++GL+++VEKF
Sbjct: 112 DLDRLVVLGRAAKRRLIESNLRLVVSVAKRYAGRGLTMLDLVQEGNLGLIRAVEKFDYTR 171
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G +F++YA WW+RQ + +A+ +RTIR+P ++ L+++V+ A+R +QE H P ++
Sbjct: 172 GFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRARRTLLQERGHEPCDAEV 231
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
A +G+T E++ ++ + + P+S+ PV + + D
Sbjct: 232 AAVLGLTPERVGEVLRLAQEPVSLHTPVGGEDEVALGDLIEDG 274
>gi|225851205|ref|YP_002731439.1| RNA polymerase sigma factor RpoD (Sigma-70) [Persephonella marina
EX-H1]
gi|225645895|gb|ACO04081.1| RNA polymerase sigma factor RpoD (Sigma-70) [Persephonella marina
EX-H1]
Length = 577
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 143/237 (60%), Gaps = 22/237 (9%)
Query: 258 RLFLWGPETRKLLTAD-EEFELIAQIQD--------------LIRLEKEKSKLQSQFGRE 302
RL P+ KLL D ++ E++ +I++ ++L++E +L+ G
Sbjct: 259 RLQKIDPDVEKLLKGDYDDPEILKKIEENGFSFGRFEILRTETLKLQEEIEELKEMIGTV 318
Query: 303 PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEG 362
PT E+ I + ++ + E+ N +++K++ +NLRLVV +AK+Y RG+ DL+QEG
Sbjct: 319 PT--EFDHVINI-IQEGRKEV---NETKQKIVQSNLRLVVSIAKKYTNRGLQFLDLIQEG 372
Query: 363 SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKR 422
++GLMK+V+KF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R
Sbjct: 373 NIGLMKAVDKFDYKKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLVRVAR 432
Query: 423 LYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
+QE P E++A++VG+ EK+ +++ ++ P+S++ P+ D D + F++
Sbjct: 433 SMVQELGREPTPEEIAKKVGMPPEKVRKILRTSQEPISLETPI-GDDDESHLGDFIE 488
>gi|217032875|ref|ZP_03438353.1| hypothetical protein HPB128_1g12 [Helicobacter pylori B128]
gi|298736968|ref|YP_003729498.1| RNA polymerase primary sigma factor [Helicobacter pylori B8]
gi|216945415|gb|EEC24081.1| hypothetical protein HPB128_1g12 [Helicobacter pylori B128]
gi|298356162|emb|CBI67034.1| RNA polymerase primary sigma factor [Helicobacter pylori B8]
Length = 679
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 438 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 497
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 498 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 557
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 558 KVKNVIKVTKEPISLETPVGNDDDGKF 584
>gi|32266044|ref|NP_860076.1| RNA polymerase sigma factor RpoD [Helicobacter hepaticus ATCC
51449]
gi|32262093|gb|AAP77142.1| RNA polymerase sigma 70 factor [Helicobacter hepaticus ATCC 51449]
Length = 623
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 382 DKAKAKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGFKFSTYAT 441
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW+RQ I +AI +RTIR+P ++ ++++ + R ++QE PD + +A+ VG+ ++
Sbjct: 442 WWIRQAISRAIADQARTIRIPIHMIETINRIHKIMRKHVQETGKEPDIDFIAKEVGLPID 501
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I IT+ P+S+ P+ +D D F
Sbjct: 502 KVKNVIKITKEPVSLDAPIGSDDDGKF 528
>gi|386750522|ref|YP_006223742.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Shi417]
gi|384556780|gb|AFH97248.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Shi417]
Length = 666
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 425 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 484
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 485 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 544
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 545 KVKNVIKVTKEPISLETPVGNDDDGKF 571
>gi|386752071|ref|YP_006225290.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Shi169]
gi|384558329|gb|AFH98796.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Shi169]
Length = 662
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 421 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 480
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 481 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 540
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 541 KVKNVIKVTKEPISLETPVGNDDDGKF 567
>gi|315638945|ref|ZP_07894116.1| DNA-directed RNA polymerase sigma subunit RpoD [Campylobacter
upsaliensis JV21]
gi|315480974|gb|EFU71607.1| DNA-directed RNA polymerase sigma subunit RpoD [Campylobacter
upsaliensis JV21]
Length = 657
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 106/147 (72%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ ++ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 414 DEAKGRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYAT 473
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW+RQ I +AI +RTIR+P ++ ++++ + R ++Q+ PD D+A+ VG++V+
Sbjct: 474 WWIRQAISRAIADQARTIRIPIHMIETINQINKIIREHLQKNGKEPDVNDIAKEVGLSVD 533
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++++I IT+ P+S++ P+ ++ D F
Sbjct: 534 KVKQVIKITKEPISLEAPIGSEDDGKF 560
>gi|68171251|ref|ZP_00544654.1| Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70
region 4:Sigma-70, non-essential region:Sigma-70 region
1.2 [Ehrlichia chaffeensis str. Sapulpa]
gi|88657966|ref|YP_507558.1| RNA polymerase sigma factor RpoD [Ehrlichia chaffeensis str.
Arkansas]
gi|67999333|gb|EAM85979.1| Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70
region 4:Sigma-70, non-essential region:Sigma-70 region
1.2 [Ehrlichia chaffeensis str. Sapulpa]
gi|88599423|gb|ABD44892.1| RNA polymerase sigma factor RpoD [Ehrlichia chaffeensis str.
Arkansas]
Length = 622
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 102/155 (65%)
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384
+ N +++++I ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF + G +F++Y
Sbjct: 381 AANQAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTY 440
Query: 385 AYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGIT 444
A WWVRQ I +AI +RTIR+P ++ ++K+ R + E P E+L+ R+ I
Sbjct: 441 ATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEMGREPTLEELSARLNIN 500
Query: 445 VEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
V+K+ +++ I + P+S++ P+ D +TF D
Sbjct: 501 VDKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIED 535
>gi|420402831|ref|ZP_14902019.1| RNA polymerase sigma factor [Helicobacter pylori CPY6081]
gi|393016298|gb|EJB17458.1| RNA polymerase sigma factor [Helicobacter pylori CPY6081]
Length = 671
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 430 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 489
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 490 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 549
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 550 KVKNVIKVTKEPISLETPVGNDDDGKF 576
>gi|383823563|ref|ZP_09978753.1| RNA polymerase sigma factor SigB [Mycobacterium xenopi RIVM700367]
gi|383338842|gb|EID17201.1| RNA polymerase sigma factor SigB [Mycobacterium xenopi RIVM700367]
Length = 319
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 130/227 (57%), Gaps = 15/227 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q+ L+E K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQY-----LLETRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ R+L + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 NRKRELAMVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q
Sbjct: 127 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQNLGREAT 186
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E+LA GI ++K+ L+ +R P+S+ PV +D++ DA
Sbjct: 187 DEELAEESGIPIDKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDA 233
>gi|451944386|ref|YP_007465022.1| RNA polymerase sigma factor SigB [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451903773|gb|AGF72660.1| RNA polymerase sigma factor SigB [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 329
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 129/226 (57%), Gaps = 12/226 (5%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL +I+ + L + S+ EP + AK
Sbjct: 30 DLVRVYLNGIGKTALLTAEDEVELAQRIE--VGLYADYLLKNSE---EP--LTRAKK--- 79
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDLK GN +R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 80 --RDLKVLAKEGNKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q
Sbjct: 138 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKRELYQHLGREATN 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E+L+ GI K+E L+ +R P+S+ PV AD++ DA
Sbjct: 198 EELSEESGIDESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDA 243
>gi|427704523|ref|YP_007047745.1| sigma-70 family RNA polymerase sigma factor [Cyanobium gracile PCC
6307]
gi|427347691|gb|AFY30404.1| RNA polymerase sigma factor, sigma-70 family [Cyanobium gracile PCC
6307]
Length = 306
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 131/219 (59%), Gaps = 19/219 (8%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 316
L FL +LLT ++E L ++Q ++ L + ++ A G +C
Sbjct: 5 LSAFLGEIGRHQLLTPEQELTLGRKVQAMVSLNERCAQ--------------AGGSGPAC 50
Query: 317 R--DL-KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
DL K L +G ++++++ ANLRLVV++AK+YQG+G+ L DL+QEG++GL ++VEKF
Sbjct: 51 EFDDLEKRTLRNGERAKQQMVTANLRLVVNLAKRYQGKGLDLLDLIQEGTIGLTRAVEKF 110
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G RF++YAYWW+RQ + +A+ SRTIR+P N+ L+++ AK ++Q SP+
Sbjct: 111 DPTRGHRFSTYAYWWIRQGLNRALSTQSRTIRIPVNVNEKLTRLRAAKARHLQSHGSSPN 170
Query: 434 KEDLARRVGITVEKLERLIF--ITRMPLSMQQPVWADQD 470
+LA +G+ V ++E L+ + + +S+Q V + D
Sbjct: 171 AAELATAMGLPVAEVEDLLGCELRSVTVSLQGAVRSKAD 209
>gi|38233998|ref|NP_939765.1| RNA polymerase sigma factor SigB [Corynebacterium diphtheriae NCTC
13129]
gi|375291083|ref|YP_005125623.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae 241]
gi|376243018|ref|YP_005133870.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae CDCE
8392]
gi|376245915|ref|YP_005136154.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC01]
gi|376248702|ref|YP_005140646.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC04]
gi|376251501|ref|YP_005138382.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC03]
gi|376257315|ref|YP_005145206.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae VA01]
gi|376287931|ref|YP_005160497.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae BH8]
gi|376290620|ref|YP_005162867.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae C7
(beta)]
gi|376293422|ref|YP_005165096.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC02]
gi|419860982|ref|ZP_14383622.1| RNA polymerase sigma factor SigB [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|38605711|sp|P33118.2|RPSB_CORDI RecName: Full=RNA polymerase sigma factor SigB
gi|38200260|emb|CAE49944.1| RNA polymerase sigma factor [Corynebacterium diphtheriae]
gi|371580754|gb|AEX44421.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae 241]
gi|371585265|gb|AEX48930.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae BH8]
gi|372104016|gb|AEX67613.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae C7
(beta)]
gi|372106260|gb|AEX72322.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae CDCE
8392]
gi|372108545|gb|AEX74606.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC01]
gi|372110745|gb|AEX76805.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC02]
gi|372113005|gb|AEX79064.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC03]
gi|372115270|gb|AEX81328.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC04]
gi|372119832|gb|AEX83566.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae VA01]
gi|387982666|gb|EIK56167.1| RNA polymerase sigma factor SigB [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 329
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 125/216 (57%), Gaps = 12/216 (5%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL I+ L +++ E + +A+
Sbjct: 30 DLVRVYLNGIGKTALLNAEDEVELAQTIE---------VGLYAEYLLENSQEPLTRAM-- 78
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDLK + G +R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 79 -KRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q+
Sbjct: 138 YSKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATN 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
E+LA GI K+E L+ +R P+S+ PV AD++
Sbjct: 198 EELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEE 233
>gi|384893697|ref|YP_005767746.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Sat464]
gi|308062951|gb|ADO04838.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Sat464]
Length = 666
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 425 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 484
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 485 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 544
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 545 KVKNVIKVTKEPISLETPVGNDDDGKF 571
>gi|384895469|ref|YP_005769458.1| DNA-directed RNA polymerase sigma subunit RpoD [Helicobacter pylori
35A]
gi|315586085|gb|ADU40466.1| DNA-directed RNA polymerase sigma subunit RpoD [Helicobacter pylori
35A]
Length = 680
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 439 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 498
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 499 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 558
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 559 KVKNVIKVTKEPISLETPVGNDDDGKF 585
>gi|227549119|ref|ZP_03979168.1| RNA polymerase sigma factor SigB [Corynebacterium lipophiloflavum
DSM 44291]
gi|227078816|gb|EEI16779.1| RNA polymerase sigma factor SigB [Corynebacterium lipophiloflavum
DSM 44291]
Length = 331
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 125/226 (55%), Gaps = 12/226 (5%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A EE EL +I+ L +QF + + +A
Sbjct: 32 DLVRVYLNGIGKTALLDAAEEVELAQRIE---------VGLYAQFLLDDPDTKLTRA--- 79
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 80 KKRDLKILAKQGRRARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 139
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ +R Q P
Sbjct: 140 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIRREMYQSLGREPTN 199
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E+L+ GI K+E L+ +R P+S+ PV AD++ DA
Sbjct: 200 EELSDESGIEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDA 245
>gi|452851225|ref|YP_007492909.1| RNA polymerase sigma factor rpoD [Desulfovibrio piezophilus]
gi|451894879|emb|CCH47758.1| RNA polymerase sigma factor rpoD [Desulfovibrio piezophilus]
Length = 581
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 104/150 (69%)
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
S ++++LI ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G +F++
Sbjct: 338 QSAMRAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFST 397
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGI 443
YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A R+
Sbjct: 398 YATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPSPEEIAERMDY 457
Query: 444 TVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+EK+++++ I + P+S++ P+ ++D++
Sbjct: 458 PLEKVKKVLKIAKEPISLETPIGDEEDSSL 487
>gi|420486715|ref|ZP_14985323.1| RNA polymerase sigma factor [Helicobacter pylori Hp P-8]
gi|420520603|ref|ZP_15019034.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-8b]
gi|393104268|gb|EJC04825.1| RNA polymerase sigma factor [Helicobacter pylori Hp P-8]
gi|393127190|gb|EJC27635.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-8b]
Length = 685
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 444 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 503
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 504 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 563
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 564 KVKNVIKVTKEPISLETPVGNDDDGKF 590
>gi|169334166|ref|ZP_02861359.1| hypothetical protein ANASTE_00560 [Anaerofustis stercorihominis DSM
17244]
gi|169258883|gb|EDS72849.1| RNA polymerase sigma factor RpoD [Anaerofustis stercorihominis DSM
17244]
Length = 403
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 108/155 (69%), Gaps = 1/155 (0%)
Query: 318 DLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQ 376
DL ++ SG+ +R+KL ANLRLVV +AK+Y RG+S DL+QEG++GL+K+VEKF
Sbjct: 155 DLAQKIESGDVEARKKLCEANLRLVVSIAKRYVNRGMSFLDLIQEGNLGLLKAVEKFDYT 214
Query: 377 AGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKED 436
G +F++YA WW+RQ I +AI +RTIR+P ++ ++K+ +R+ IQ+ P+ +
Sbjct: 215 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLKRVQRMLIQDLGRDPNSHE 274
Query: 437 LARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+A+ +G+ EK+ ++ I++ P+S++ P+ ++D+
Sbjct: 275 IAKEMGLPEEKVRDIMKISQDPVSLETPIGEEEDS 309
>gi|420433272|ref|ZP_14932281.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-24]
gi|420507028|ref|ZP_15005541.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp H-24b]
gi|420508719|ref|ZP_15007221.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp H-24c]
gi|420534029|ref|ZP_15032380.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp M2]
gi|420535834|ref|ZP_15034176.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp M3]
gi|420537539|ref|ZP_15035869.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp M4]
gi|420539266|ref|ZP_15037585.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp M5]
gi|420541021|ref|ZP_15039329.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp M6]
gi|420542418|ref|ZP_15040715.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp M9]
gi|393052140|gb|EJB53090.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-24]
gi|393119109|gb|EJC19600.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp H-24b]
gi|393120145|gb|EJC20634.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp H-24c]
gi|393142252|gb|EJC42606.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp M2]
gi|393143482|gb|EJC43826.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp M3]
gi|393145094|gb|EJC45425.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp M4]
gi|393146951|gb|EJC47276.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp M5]
gi|393147641|gb|EJC47965.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp M6]
gi|393160339|gb|EJC60586.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp M9]
Length = 677
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 436 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 495
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 496 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 555
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 556 KVKNVIKVTKEPISLETPVGNDDDGKF 582
>gi|420459562|ref|ZP_14958362.1| RNA polymerase sigma factor [Helicobacter pylori Hp A-27]
gi|393077646|gb|EJB78394.1| RNA polymerase sigma factor [Helicobacter pylori Hp A-27]
Length = 676
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 104/148 (70%)
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 434 SDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYA 493
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE + PD E +A VG+++
Sbjct: 494 TWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETSKEPDLEVVAEEVGLSL 553
Query: 446 EKLERLIFITRMPLSMQQPVWADQDTTF 473
+K++ +I +T+ P+S++ PV D D F
Sbjct: 554 DKVKNVIKVTKEPISLETPVGNDDDGKF 581
>gi|420451252|ref|ZP_14950106.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-45]
gi|393065184|gb|EJB66014.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-45]
Length = 682
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 441 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 500
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 501 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 560
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 561 KVKNVIKVTKEPISLETPVGNDDDGKF 587
>gi|428315381|ref|YP_007113263.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria
nigro-viridis PCC 7112]
gi|428239061|gb|AFZ04847.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria
nigro-viridis PCC 7112]
Length = 421
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 125/226 (55%), Gaps = 26/226 (11%)
Query: 271 TADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSGN-- 327
A +E LIA+ LI + + +L +Q G +P+L WA G+ +LK + G
Sbjct: 104 VASQEEGLIARFVHLIEV---RDRLAAQLGHKPSLERWALTAGVGDVPELKRIMSEGKRQ 160
Query: 328 --------------------SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
+++ +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 161 WAELAEMTVETIERIQAEGVEAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 220
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 427
++VEKF P G RF++YAYWW+RQ I +AI SRTIRLP +I L+K+ +A+R QE
Sbjct: 221 RAVEKFDPTRGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQE 280
Query: 428 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+ ED+A + +T ++ ++ +S++ V ++DT
Sbjct: 281 KGRTATIEDIAVELDMTAPQVREVLLRVPRSVSLETKVGNEKDTEL 326
>gi|420532464|ref|ZP_15030827.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp M1]
gi|393140095|gb|EJC40468.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp M1]
Length = 677
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 436 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 495
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 496 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 555
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 556 KVKNVIKVTKEPISLETPVGNDDDGKF 582
>gi|260436706|ref|ZP_05790676.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8109]
gi|260414580|gb|EEX07876.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8109]
Length = 377
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 133/269 (49%), Gaps = 42/269 (15%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELI--------------------AQIQDLIRLEKEKS 293
D LRL+L LLT +EE L A I +L RLE+ +
Sbjct: 20 TDLLRLYLQDIGRVDLLTNEEEVTLARLVQRREALLLQQRELAESDAAIGELHRLEELQR 79
Query: 294 KLQSQFGREPTLIEWAKAIGL----------------------SCRDLKSELHSGNSSRE 331
+ +Q PT EWA+A GL +D+K L +G +++
Sbjct: 80 REANQHSHWPTKQEWARAAGLPLPDLQQRIELGYQAWAEQAQLEAKDVKLALRNGRRAKD 139
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
+I ANLRLVV VAK+YQ RG+ + DL+QEG++GL ++VEKF P G RF++YAYWW+RQ
Sbjct: 140 HMIQANLRLVVAVAKKYQQRGMEILDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQ 199
Query: 392 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451
I +AI SRTIRLP ++ L+++ ++ DLAR +GI+ + + +
Sbjct: 200 GITRAIATQSRTIRLPVHVTEKLNRIKRVQQEIASNEGRIASIADLARELGISEDTVRQT 259
Query: 452 IFITRMPLSMQQPVWADQDTTFQSTFLDA 480
+ +S+ V +QDT D
Sbjct: 260 LARVPRSVSLDTRVGREQDTQLGDLIEDG 288
>gi|420416261|ref|ZP_14915372.1| RNA polymerase sigma factor rpoD [Helicobacter pylori NQ4044]
gi|393037707|gb|EJB38742.1| RNA polymerase sigma factor rpoD [Helicobacter pylori NQ4044]
Length = 679
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 438 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 497
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 498 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 557
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 558 KVKNVIKVTKEPISLETPVGNDDDGKF 584
>gi|363420377|ref|ZP_09308469.1| RNA polymerase sigma factor SigB [Rhodococcus pyridinivorans AK37]
gi|359735619|gb|EHK84576.1| RNA polymerase sigma factor SigB [Rhodococcus pyridinivorans AK37]
Length = 320
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 133/228 (58%), Gaps = 17/228 (7%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I+ + L ++ L+E K +
Sbjct: 22 DLVRVYLNGIGRTALLTAADEVELAKRIE---------AGLYAKH-----LLETKKRLSA 67
Query: 315 SC-RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 68 AKKRDLAIIVREGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKR-LYIQEGNHSP 432
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR L+ Q G +
Sbjct: 128 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREAT 187
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
D E+LA GI VEK+ L+ +R P+S+ PV D++ DA
Sbjct: 188 D-EELANESGIPVEKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDA 234
>gi|385248596|ref|YP_005776815.1| RNA polymerase sigma factor RpoD [Helicobacter pylori F57]
gi|317181391|dbj|BAJ59175.1| RNA polymerase sigma factor RpoD [Helicobacter pylori F57]
Length = 665
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 424 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 483
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 484 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 543
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 544 KVKNVIKVTKEPISLETPVGNDDDGKF 570
>gi|325677627|ref|ZP_08157279.1| RNA polymerase sigma factor RpoD [Ruminococcus albus 8]
gi|324110595|gb|EGC04759.1| RNA polymerase sigma factor RpoD [Ruminococcus albus 8]
Length = 366
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 107/157 (68%), Gaps = 6/157 (3%)
Query: 321 SELHSGNSSRE------KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+E+ SG++ R+ +L ANLRLVV +AK+Y GRG+S DL+QEG+MGL+K+VEKF
Sbjct: 115 AEMMSGDNDRDASKARKRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLIKAVEKFD 174
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
+ G +F++YA WW+RQ I +AI +RTIR+P ++ ++KV +A + + H P
Sbjct: 175 YKKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETITKVKKASSQLLHKNGHDPSP 234
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E++A + ++VEK+ ++ I + P+S++ P+ ++D+
Sbjct: 235 EEIAEDLDMSVEKVREIMRIAQDPVSLETPIGEEEDS 271
>gi|219130701|ref|XP_002185497.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403028|gb|EEC42984.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 329
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 126/213 (59%), Gaps = 2/213 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI-- 312
D +R ++ +LL +EE L ++Q LI+ E + +L+++ R PT EWA I
Sbjct: 1 DSIRSYIKTMCNHELLNKNEEIILGREVQVLIQYEATREQLEAELLRPPTYQEWATKIQP 60
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
+ DLK ++ ++ L +N+RLVV +AK+YQ RG+S DL QEG +GL ++ EK
Sbjct: 61 DMMVPDLKKQIRRSLRAKAALTESNIRLVVSIAKRYQHRGLSFQDLAQEGILGLTRACEK 120
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F P+ G RF++YA WW++Q+I +AI RTIRLP +I+ ++ + + +R E
Sbjct: 121 FDPERGFRFSTYASWWIKQSIMRAIADQGRTIRLPVHIHDQINALRKVERELKAELGRDA 180
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPV 465
E++ + +T EK+E L +++ +SM+Q +
Sbjct: 181 RLEEITEKSTLTAEKIEFLNRVSQQDVSMEQEL 213
>gi|385226359|ref|YP_005786283.1| RNA polymerase sigma factor RpoD [Helicobacter pylori SNT49]
gi|344331272|gb|AEN16302.1| RNA polymerase sigma factor RpoD [Helicobacter pylori SNT49]
Length = 670
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 429 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 488
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 489 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 548
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 549 KVKNVIKVTKEPISLETPVGNDDDGKF 575
>gi|403713571|ref|ZP_10939671.1| RNA polymerase principal sigma factor HrdB [Kineosphaera limosa
NBRC 100340]
gi|403212335|dbj|GAB94354.1| RNA polymerase principal sigma factor HrdB [Kineosphaera limosa
NBRC 100340]
Length = 633
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 129/226 (57%), Gaps = 13/226 (5%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP++ +L LL A++E EL +I+ + E+ KL S EP L
Sbjct: 335 DPVKDYLKQIGKVALLNAEQEVELAKRIEAGLFAEE---KLNSGEEVEPQL--------- 382
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDL G +++ L+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 383 -KRDLWWIAQDGKNAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFD 441
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
G +F++YA WW+RQ I +A+ +RTIR+P ++ +++K+ +R +Q+ P
Sbjct: 442 YTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTP 501
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E+LA+ + +T EK+ + R P+S+ P+ D D+ F D+
Sbjct: 502 EELAKELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDS 547
>gi|420480101|ref|ZP_14978745.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-1]
gi|420510545|ref|ZP_15009035.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-1b]
gi|393098014|gb|EJB98606.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-1]
gi|393122286|gb|EJC22763.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-1b]
Length = 679
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 438 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 497
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 498 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 557
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 558 KVKNVIKVTKEPISLETPVGNDDDGKF 584
>gi|315453594|ref|YP_004073864.1| RNA polymerase sigma factor (sigma-70) [Helicobacter felis ATCC
49179]
gi|315132646|emb|CBY83274.1| RNA polymerase sigma factor (sigma-70) [Helicobacter felis ATCC
49179]
Length = 621
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 102/147 (69%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + RF++YA
Sbjct: 380 DKAKNKMARSNLRLVVSIAKRYTSRGLPFLDLIQEGNIGLMKAVDKFEHEKNYRFSTYAT 439
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R Y+QE PD + +A+ VG+ ++
Sbjct: 440 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKYMQENGKEPDLDLVAKEVGLPLD 499
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I IT+ P+S++ PV D D F
Sbjct: 500 KVKNVIKITKEPISLESPVGNDDDGKF 526
>gi|182438860|ref|YP_001826579.1| RNA polymerase principal sigma factor [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326779516|ref|ZP_08238781.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
griseus XylebKG-1]
gi|178467376|dbj|BAG21896.1| putative RNA polymerase principal sigma factor [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326659849|gb|EGE44695.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
griseus XylebKG-1]
Length = 363
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 107/163 (65%)
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
DL + G +++ +LI ANLRLVV VAK+Y GRG+++ DL+QEG++GL+++VEKF
Sbjct: 115 DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYAR 174
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G +F++YA WW+RQ + +A+ +RTIR+P ++ L+++V+ +R +QE P ED+
Sbjct: 175 GYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAEDI 234
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
A + +T E++ ++ + + P+S+ PV + D +F D
Sbjct: 235 AVDLDLTPERVTDILRLAQEPVSLHAPVGEEDDVSFGDLIEDG 277
>gi|169824520|ref|YP_001692131.1| RNA polymerase sigma A factor [Finegoldia magna ATCC 29328]
gi|302380672|ref|ZP_07269137.1| RNA polymerase sigma factor RpoD [Finegoldia magna ACS-171-V-Col3]
gi|303233690|ref|ZP_07320344.1| RNA polymerase sigma factor RpoD [Finegoldia magna BVS033A4]
gi|417926538|ref|ZP_12569936.1| RNA polymerase sigma factor RpoD [Finegoldia magna
SY403409CC001050417]
gi|167831325|dbj|BAG08241.1| RNA polymerase sigma A factor [Finegoldia magna ATCC 29328]
gi|302311615|gb|EFK93631.1| RNA polymerase sigma factor RpoD [Finegoldia magna ACS-171-V-Col3]
gi|302495124|gb|EFL54876.1| RNA polymerase sigma factor RpoD [Finegoldia magna BVS033A4]
gi|341589053|gb|EGS32420.1| RNA polymerase sigma factor RpoD [Finegoldia magna
SY403409CC001050417]
Length = 388
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 107/154 (69%), Gaps = 1/154 (0%)
Query: 319 LKSELHSGNS-SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
L E+ +G+ +++KL ANLRLVV +AK+Y GRG+S DL+QEG++GLMK+V+KF
Sbjct: 140 LAQEMENGSKRAKKKLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNLGLMKAVDKFDYTR 199
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G +F++YA WW+RQ I +AI +RTIR+P ++ +++++ +R +Q+ P E++
Sbjct: 200 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRLVRIERQLLQDLGRDPTNEEI 259
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
A+ +GI VEK+ + I + P+S++ P+ ++D+
Sbjct: 260 AKEMGIEVEKVREVRKIAQEPVSLETPIGEEEDS 293
>gi|384899577|ref|YP_005774957.1| RNA polymerase sigma factor RpoD [Helicobacter pylori F30]
gi|317179521|dbj|BAJ57309.1| RNA polymerase sigma factor RpoD [Helicobacter pylori F30]
Length = 666
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 425 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 484
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 485 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 544
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 545 KVKNVIKVTKEPISLETPVGNDDDGKF 571
>gi|87307035|ref|ZP_01089181.1| RNA polymerase sigma factor rpoD [Blastopirellula marina DSM 3645]
gi|87290408|gb|EAQ82296.1| RNA polymerase sigma factor rpoD [Blastopirellula marina DSM 3645]
Length = 519
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 99/152 (65%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ +L NLRLVV +AK+Y+ RG+S DL+QEG+ GLM++V+KF+ + G +F +YA WW
Sbjct: 282 AKRELSEGNLRLVVSIAKKYRNRGLSFLDLIQEGNAGLMRAVDKFEYRRGFKFCTYATWW 341
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +A+ SRTIR+P ++ +S+V R +QE P E+ ARR G TVE+
Sbjct: 342 IRQAITRAVADQSRTIRIPVHMVETMSRVRNVARQLLQEKGREPTLEETARRAGTTVEEA 401
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
R++ ++R P+S+ +PV +D+ F D
Sbjct: 402 RRVLAMSRYPISLDRPVGNSEDSQFGDLLPDG 433
>gi|421717643|ref|ZP_16156945.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R038b]
gi|407223150|gb|EKE92943.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R038b]
Length = 676
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 435 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 494
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 495 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 554
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 555 KVKNVIKVTKEPISLETPVGNDDDGKF 581
>gi|420493446|ref|ZP_14992017.1| RNA polymerase sigma factor [Helicobacter pylori Hp P-16]
gi|393112702|gb|EJC13222.1| RNA polymerase sigma factor [Helicobacter pylori Hp P-16]
Length = 679
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 438 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 497
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 498 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 557
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 558 KVKNVIKVTKEPISLETPVGNDDDGKF 584
>gi|312622967|ref|YP_004024580.1| RNA polymerase, sigma 70 subunit, rpod subfamily
[Caldicellulosiruptor kronotskyensis 2002]
gi|312203434|gb|ADQ46761.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor kronotskyensis 2002]
Length = 417
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 40/225 (17%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG +DP+R++L LLT +EE EL +I+
Sbjct: 138 LPEGIAIDDPVRMYLKEIGKIPLLTPEEEIELAKRIE----------------------- 174
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
++++L ANLRLVV +AK+Y GRG+ DL+QEG++GL
Sbjct: 175 -----------------QGDEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 217
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
+K+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +Q
Sbjct: 218 LKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQ 277
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E P E++A+ + + VEK+ ++ I + P+S++ P+ ++D+
Sbjct: 278 EKGREPTPEEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDS 322
>gi|302871329|ref|YP_003839965.1| RpoD subfamily RNA polymerase sigma-70 subunit
[Caldicellulosiruptor obsidiansis OB47]
gi|302574188|gb|ADL41979.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor obsidiansis OB47]
Length = 417
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 40/225 (17%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG +DP+R++L LLT +EE EL +I+
Sbjct: 138 LPEGIAIDDPVRMYLKEIGKIPLLTPEEEIELAKRIE----------------------- 174
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
++++L ANLRLVV +AK+Y GRG+ DL+QEG++GL
Sbjct: 175 -----------------QGDEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 217
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
+K+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +Q
Sbjct: 218 LKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQ 277
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E P E++A+ + + VEK+ ++ I + P+S++ P+ ++D+
Sbjct: 278 EKGREPTPEEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDS 322
>gi|386747721|ref|YP_006220929.1| RNA polymerase sigma factor RpoD [Helicobacter cetorum MIT 99-5656]
gi|384553963|gb|AFI05719.1| RNA polymerase sigma factor RpoD [Helicobacter cetorum MIT 99-5656]
Length = 647
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 104/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 406 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEYEKGFKFSTYAT 465
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 466 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 525
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D+D F
Sbjct: 526 KVKNVIKVTKEPISLEAPVGNDEDGKF 552
>gi|148240795|ref|YP_001226182.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147849334|emb|CAK24885.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 376
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 137/269 (50%), Gaps = 42/269 (15%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFEL--------------------IAQIQDLIRLEKEKS 293
ND LRL+L LLT++EE L IA I+ L+ LE+ +
Sbjct: 19 NDLLRLYLQDIGRVDLLTSEEEVTLSRQVQQRERLLVQERDLSTRIAAIRVLLDLEELQQ 78
Query: 294 KLQSQFGREPTLIEWAKAI----------------------GLSCRDLKSELHSGNSSRE 331
+ + PT EWA+A GL ++L+ L G +R+
Sbjct: 79 REANHISHWPTRQEWARAAEMPLVELNRVLNEGYTLWAEESGLEAKELQRRLREGRRARD 138
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+RQ
Sbjct: 139 RMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQ 198
Query: 392 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451
I +AI SRTIRLP +I L+++ ++ E DLA+ +G++ + + +
Sbjct: 199 GITRAIATQSRTIRLPVHITEKLNRIKRVQQEIASEQGRLASVSDLAKELGVSEDTVRQT 258
Query: 452 IFITRMPLSMQQPVWADQDTTFQSTFLDA 480
+ +S++ V DQDT D
Sbjct: 259 LARVPRSVSLETRVGKDQDTQLGDLLEDG 287
>gi|421719137|ref|ZP_16158424.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R046Wa]
gi|407222855|gb|EKE92651.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R046Wa]
Length = 680
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 439 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 498
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 499 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 558
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 559 KVKNVIKVTKEPISLETPVGNDDDGKF 585
>gi|420481660|ref|ZP_14980297.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-2]
gi|420512079|ref|ZP_15010562.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-2b]
gi|393098894|gb|EJB99475.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-2]
gi|393157142|gb|EJC57403.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-2b]
Length = 681
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|420399541|ref|ZP_14898746.1| RNA polymerase sigma factor [Helicobacter pylori CPY3281]
gi|393019690|gb|EJB20831.1| RNA polymerase sigma factor [Helicobacter pylori CPY3281]
Length = 670
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 429 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 488
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 489 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 548
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 549 KVKNVIKVTKEPISLETPVGNDDDGKF 575
>gi|227499774|ref|ZP_03929874.1| DNA-directed RNA polymerase sigma subunit RpoD [Anaerococcus
tetradius ATCC 35098]
gi|227218160|gb|EEI83426.1| DNA-directed RNA polymerase sigma subunit RpoD [Anaerococcus
tetradius ATCC 35098]
Length = 606
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 106/154 (68%)
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+LK + + +++KL NLRLVV +AK+Y GRG+S DL+QEG+MGLMK+V+K+
Sbjct: 359 ELKRAVINSKRAKQKLAETNLRLVVSIAKKYVGRGMSFLDLIQEGNMGLMKAVDKYDYNR 418
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+ P E++
Sbjct: 419 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLVQDLGRDPSNEEI 478
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
A ++GI V+K++ + I++ P+S++ P+ + D+
Sbjct: 479 AEQMGIEVDKVQEIRKISQEPVSLETPIGEEDDS 512
>gi|425790485|ref|YP_007018402.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Aklavik86]
gi|425628800|gb|AFX89340.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Aklavik86]
Length = 681
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|420443093|ref|ZP_14942022.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-41]
gi|393061498|gb|EJB62363.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-41]
Length = 675
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 434 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 493
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 494 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 553
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 554 KVKNVIKVTKEPISLETPVGNDDDGKF 580
>gi|23978360|dbj|BAC21145.1| principal sigma factor [Pleurocapsa sp. PCC 7314]
Length = 203
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 103/149 (69%), Gaps = 1/149 (0%)
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTI 393
+++NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I
Sbjct: 1 VHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 394 RKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453
+AI SRTIRLP ++Y +S++ + +L QE P +E++A R+ +T+EKL +
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQERGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 454 ITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++P+S++ P+ ++D+ F++A G
Sbjct: 121 SAQLPISLETPIGKEEDSRL-GDFIEADG 148
>gi|420422974|ref|ZP_14922048.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp A-4]
gi|393042925|gb|EJB43930.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp A-4]
Length = 677
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 436 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 495
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 496 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 555
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 556 KVKNVIKVTKEPISLETPVGNDDDGKF 582
>gi|392416004|ref|YP_006452609.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
chubuense NBB4]
gi|390615780|gb|AFM16930.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
chubuense NBB4]
Length = 319
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 128/227 (56%), Gaps = 15/227 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + R L++ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE------------AGLYARH--LLQTRKRLGD 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q
Sbjct: 127 DYSKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREAT 186
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E+LA GI VEK+ L+ +R P+S+ PV +D++ DA
Sbjct: 187 DEELAAESGIPVEKITDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDA 233
>gi|322433717|ref|YP_004215929.1| RpoD subfamily RNA polymerase sigma-70 subunit [Granulicella
tundricola MP5ACTX9]
gi|321161444|gb|ADW67149.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Granulicella
tundricola MP5ACTX9]
Length = 566
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 109/166 (65%), Gaps = 7/166 (4%)
Query: 313 GLSCRDLKS---ELHSGNSSREK----LINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365
G+S DLK E+ G+ EK LI ANLRLVV +AK+Y RG+ DL+QEG++G
Sbjct: 301 GISIPDLKRTQREMIQGDMDAEKAKRELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIG 360
Query: 366 LMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYI 425
LMK+V+KF+ + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +
Sbjct: 361 LMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLV 420
Query: 426 QEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
QE E++ARR+ I V K+ +++ I + P+S++ P+ ++D+
Sbjct: 421 QELGREASSEEIARRMDIPVAKVRKVLKIAQEPISLETPIGEEEDS 466
>gi|15611152|ref|NP_222803.1| RNA polymerase sigma factor RpoD [Helicobacter pylori J99]
gi|11387124|sp|Q9ZMY3.1|RPOD_HELPJ RecName: Full=RNA polymerase sigma factor RpoD; AltName:
Full=Sigma-70
gi|4154591|gb|AAD05665.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|420485122|ref|ZP_14983740.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-4]
gi|420515613|ref|ZP_15014076.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-4c]
gi|420517314|ref|ZP_15015769.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-4d]
gi|393103257|gb|EJC03820.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-4]
gi|393123912|gb|EJC24380.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-4c]
gi|393125128|gb|EJC25594.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-4d]
Length = 681
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|420471571|ref|ZP_14970269.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-18]
gi|393092035|gb|EJB92661.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-18]
Length = 687
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 446 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 505
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 506 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 565
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 566 KVKNVIKVTKEPISLETPVGNDDDGKF 592
>gi|303229406|ref|ZP_07316196.1| RNA polymerase sigma factor RpoD [Veillonella atypica
ACS-134-V-Col7a]
gi|303230872|ref|ZP_07317619.1| RNA polymerase sigma factor RpoD [Veillonella atypica
ACS-049-V-Sch6]
gi|429760133|ref|ZP_19292623.1| RNA polymerase sigma factor RpoD [Veillonella atypica KON]
gi|302514632|gb|EFL56627.1| RNA polymerase sigma factor RpoD [Veillonella atypica
ACS-049-V-Sch6]
gi|302515942|gb|EFL57894.1| RNA polymerase sigma factor RpoD [Veillonella atypica
ACS-134-V-Col7a]
gi|429178538|gb|EKY19816.1| RNA polymerase sigma factor RpoD [Veillonella atypica KON]
Length = 388
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 122/218 (55%), Gaps = 28/218 (12%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LL+ADEE L QI+ G
Sbjct: 105 DDPVRMYLKEIGRVPLLSADEEIVLAKQIE----------------------------AG 136
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
E+ +++KL++ANLRLVV +AK+Y GRG+ DL+QEG++GL+K+V+KF
Sbjct: 137 AEEDATYKEIQLSKKAKKKLVDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVDKF 196
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +Q+ P
Sbjct: 197 DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQDKGREPT 256
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E++A +GIT E++ + I + P+S++ P+ ++D+
Sbjct: 257 PEEIAEGMGITAERVREIQKIAQEPVSLETPIGEEEDS 294
>gi|317153216|ref|YP_004121264.1| RNA polymerase sigma factor RpoD [Desulfovibrio aespoeensis Aspo-2]
gi|316943467|gb|ADU62518.1| RNA polymerase sigma factor RpoD [Desulfovibrio aespoeensis Aspo-2]
Length = 581
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 104/149 (69%)
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384
S ++++LI ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G +F++Y
Sbjct: 339 SAMRAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTY 398
Query: 385 AYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGIT 444
A WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A R+
Sbjct: 399 ATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPSPEEIAERMDYP 458
Query: 445 VEKLERLIFITRMPLSMQQPVWADQDTTF 473
+EK+++++ I + P+S++ P+ ++D++
Sbjct: 459 LEKVKKVLKIAKEPISLETPIGDEEDSSL 487
>gi|196229539|ref|ZP_03128404.1| RNA polymerase, sigma 70 subunit, RpoD family [Chthoniobacter
flavus Ellin428]
gi|196226771|gb|EDY21276.1| RNA polymerase, sigma 70 subunit, RpoD family [Chthoniobacter
flavus Ellin428]
Length = 671
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 110/166 (66%), Gaps = 1/166 (0%)
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQ 376
++LK L ++ +++ ANLRLV+ +AK+Y RG+S DL+QEG+MGLMK+VEKF+ +
Sbjct: 418 KELKVWLKKALKAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 477
Query: 377 AGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKED 436
G +F++YA WW+RQ I ++I +RTIR+P ++ ++K++ ++ +Q+ P E+
Sbjct: 478 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLVQDYGREPTPEE 537
Query: 437 LARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
+A + + VE++ ++ + + P+S+Q PV DT+F F++ G
Sbjct: 538 VADEIQLPVERVRAVLKMAQQPISLQSPVGESDDTSF-GDFIEDKG 582
>gi|387907461|ref|YP_006337795.1| RNA polymerase sigma factor RpoD [Helicobacter pylori XZ274]
gi|387572396|gb|AFJ81104.1| RNA polymerase sigma factor RpoD [Helicobacter pylori XZ274]
Length = 666
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 425 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 484
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 485 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 544
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 545 KVKNVIKVTKEPISLETPVGNDDDGKF 571
>gi|239906706|ref|YP_002953447.1| RNA polymerase sigma factor SigA [Desulfovibrio magneticus RS-1]
gi|239796572|dbj|BAH75561.1| RNA polymerase sigma factor SigA [Desulfovibrio magneticus RS-1]
Length = 588
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 105/150 (70%)
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
++ ++++LI ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G +F++
Sbjct: 345 NAAQRAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFST 404
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGI 443
YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A R+
Sbjct: 405 YATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIAERMDY 464
Query: 444 TVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+EK+++++ I + P+S++ P+ ++D++
Sbjct: 465 PLEKVKKVLKIAKEPISLETPIGDEEDSSL 494
>gi|156740279|ref|YP_001430408.1| RpoD family RNA polymerase sigma factor [Roseiflexus castenholzii
DSM 13941]
gi|156231607|gb|ABU56390.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus
castenholzii DSM 13941]
Length = 541
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 104/157 (66%)
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQ 376
RD + G ++RE L ANLRLVV VAK+Y GRG+ L DL+QEG++GL+++VEKF +
Sbjct: 292 RDWNLAIEQGKTAREDLTQANLRLVVSVAKKYIGRGLQLLDLIQEGNVGLIRAVEKFDYR 351
Query: 377 AGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKED 436
G +F++YA WW+RQ I +AI +RTIR+P ++ +++++ R +QE P E+
Sbjct: 352 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRLMRESRRMLQELGREPTDEE 411
Query: 437 LARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
L+R +GI V+K+ + + P+S++ PV ++D+
Sbjct: 412 LSRALGIPVDKVRSIRKTSLEPVSLETPVGQEEDSQL 448
>gi|420500543|ref|ZP_14999089.1| RNA polymerase sigma factor [Helicobacter pylori Hp P-30]
gi|393152310|gb|EJC52611.1| RNA polymerase sigma factor [Helicobacter pylori Hp P-30]
Length = 676
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 435 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 494
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 495 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 554
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 555 KVKNVIKVTKEPISLETPVGNDDDGKF 581
>gi|420457960|ref|ZP_14956770.1| RNA polymerase sigma factor [Helicobacter pylori Hp A-26]
gi|393075481|gb|EJB76235.1| RNA polymerase sigma factor [Helicobacter pylori Hp A-26]
Length = 680
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 439 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 498
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 499 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 558
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 559 KVKNVIKVTKEPISLETPVGNDDDGKF 585
>gi|358445390|ref|ZP_09156000.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
gi|356608836|emb|CCE54245.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
Length = 334
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 137/261 (52%), Gaps = 23/261 (8%)
Query: 230 VTNHETYNSRKASVK--KKLSEGFDRN--------DPLRLFLWGPETRKLLTADEEFELI 279
+T+ NS AS K K++ G R D +R++L G LL+A++E EL
Sbjct: 1 MTDASAQNSHDASEKNEKEVDRGSRRGQTNDNPSADLVRVYLNGIGKTALLSAEDEVELA 60
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLR 339
I+ L +++ L K RD+K + G +R L+ ANLR
Sbjct: 61 QAIE---------IGLYAEY----KLANADKLTRAEKRDMKILVKEGKKARSHLLEANLR 107
Query: 340 LVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQ 399
LVV +AK+Y GRG+ L DL+QEG++GL++++EKF G +F++YA WW+RQ I + +
Sbjct: 108 LVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMAD 167
Query: 400 HSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPL 459
SRTIRLP ++ ++K+ KR Q E+LA GI K+E L+ +R P+
Sbjct: 168 QSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATNEELAEESGIEENKIEMLLRQSRDPV 227
Query: 460 SMQQPVWADQDTTFQSTFLDA 480
S+ PV AD++ DA
Sbjct: 228 SLDMPVGADEEAPLGDFIEDA 248
>gi|312128161|ref|YP_003993035.1| RNA polymerase, sigma 70 subunit, rpod subfamily
[Caldicellulosiruptor hydrothermalis 108]
gi|312134621|ref|YP_004001959.1| RNA polymerase, sigma 70 subunit, rpod subfamily
[Caldicellulosiruptor owensensis OL]
gi|312792985|ref|YP_004025908.1| RNA polymerase, sigma 70 subunit, rpod subfamily
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|311774672|gb|ADQ04159.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor owensensis OL]
gi|311778180|gb|ADQ07666.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor hydrothermalis 108]
gi|312180125|gb|ADQ40295.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 417
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 40/225 (17%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG +DP+R++L LLT +EE EL +I+
Sbjct: 138 LPEGIAIDDPVRMYLKEIGKIPLLTPEEEIELAKRIE----------------------- 174
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
++++L ANLRLVV +AK+Y GRG+ DL+QEG++GL
Sbjct: 175 -----------------QGDEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 217
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
+K+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +Q
Sbjct: 218 LKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQ 277
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E P E++A+ + + VEK+ ++ I + P+S++ P+ ++D+
Sbjct: 278 EKGREPTPEEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDS 322
>gi|357413573|ref|YP_004925309.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
flavogriseus ATCC 33331]
gi|320010942|gb|ADW05792.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
flavogriseus ATCC 33331]
Length = 358
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 110/168 (65%), Gaps = 1/168 (0%)
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
GL+ DL + G ++ +LI ANLRLVV VAK+Y GRG+++ DL+QEG++GL+++VEK
Sbjct: 106 GLAV-DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEK 164
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F G +F++YA WW+RQ + +A+ +RTIR+P ++ L+++V+ +R +QE + P
Sbjct: 165 FDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEP 224
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E++A ++ +T E++ ++ + + P+S+ PV + D F D
Sbjct: 225 APEEVAAQLDLTPERVSEVLRLAQEPVSLHAPVGEEDDVAFGDLIEDG 272
>gi|404495252|ref|YP_006719358.1| RNA polymerase sigma-70 factor RpoD [Geobacter metallireducens
GS-15]
gi|418065719|ref|ZP_12703090.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacter
metallireducens RCH3]
gi|78192871|gb|ABB30638.1| RNA polymerase sigma-70 factor RpoD [Geobacter metallireducens
GS-15]
gi|373561799|gb|EHP88025.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacter
metallireducens RCH3]
Length = 579
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 111/177 (62%), Gaps = 8/177 (4%)
Query: 313 GLSCRDLKSELHSGNSSREK-------LINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365
G ++L LH+ + K L+ ANLRLVV +AK+Y RG+ DL+QEG++G
Sbjct: 319 GFKAQELSDALHAIDRGEAKAKLAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIG 378
Query: 366 LMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYI 425
LMK+V+KF+ Q G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +
Sbjct: 379 LMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLV 438
Query: 426 QEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
QE P E++A R+ + ++K+ +++ I + P+S++ P+ ++D+ F++ G
Sbjct: 439 QEIGREPSPEEIAERMNLPLDKVRKVLKIAKEPISLETPIGEEEDSHL-GDFIEDKG 494
>gi|421714255|ref|ZP_16153576.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R036d]
gi|407217940|gb|EKE87769.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R036d]
Length = 676
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 435 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 494
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 495 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 554
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 555 KVKNVIKVTKEPISLETPVGNDDDGKF 581
>gi|420483359|ref|ZP_14981989.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-3]
gi|420513710|ref|ZP_15012183.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-3b]
gi|393102584|gb|EJC03148.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-3]
gi|393158173|gb|EJC58433.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-3b]
Length = 681
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|420464777|ref|ZP_14963544.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-6]
gi|393082264|gb|EJB82980.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-6]
Length = 664
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 423 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 482
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 483 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 542
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 543 KVKNVIKVTKEPISLETPVGNDDDGKF 569
>gi|87300555|ref|ZP_01083397.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 5701]
gi|87284426|gb|EAQ76378.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 5701]
Length = 398
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 109/166 (65%), Gaps = 4/166 (2%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA + LS DL+ L G +R+++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 137 WAACLDLSLSDLQQRLLRGRRARDRMIQANLRLVVAVAKKYQKRGVELLDLVQEGTLGLE 196
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 427
++VEK+ P G RF++YAYWW+RQ + +AI SRTIRLP ++ L+++ +A+R + +
Sbjct: 197 RAVEKYDPTRGFRFSTYAYWWIRQGVTRAIATQSRTIRLPVHVTEKLNRIKKAQRQFASD 256
Query: 428 GNHSPDKEDLARRVGITVEKLERLIFITRMP--LSMQQPVWADQDT 471
+ +LA + + E + RL + R+P +S++ V DQDT
Sbjct: 257 HGRTASLAELAEALQWSEEAV-RLTLL-RVPRSISLEAKVGRDQDT 300
>gi|420428103|ref|ZP_14927138.1| RNA polymerase sigma factor [Helicobacter pylori Hp A-17]
gi|393045762|gb|EJB46742.1| RNA polymerase sigma factor [Helicobacter pylori Hp A-17]
Length = 679
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 438 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 497
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 498 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 557
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 558 KVKNVIKVTKEPISLETPVGNDDDGKF 584
>gi|188526895|ref|YP_001909582.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Shi470]
gi|188143135|gb|ACD47552.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Shi470]
Length = 661
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 420 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 479
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 480 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLD 539
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 540 KVKNVIKVTKEPISLETPVGNDDDGKF 566
>gi|421720999|ref|ZP_16160276.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R055a]
gi|407225783|gb|EKE95553.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R055a]
Length = 679
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 438 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 497
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 498 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 557
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 558 KVKNVIKVTKEPISLETPVGNDDDGKF 584
>gi|420478541|ref|ZP_14977194.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-34]
gi|393097315|gb|EJB97909.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-34]
Length = 681
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|420461380|ref|ZP_14960171.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-3]
gi|393081896|gb|EJB82614.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-3]
Length = 681
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|308183886|ref|YP_003928019.1| RNA polymerase sigma factor RpoD [Helicobacter pylori SJM180]
gi|308059806|gb|ADO01702.1| RNA polymerase sigma factor RpoD [Helicobacter pylori SJM180]
Length = 679
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 438 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 497
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 498 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 557
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 558 KVKNVIKVTKEPISLETPVGNDDDGKF 584
>gi|222528719|ref|YP_002572601.1| RpoD subfamily RNA polymerase sigma-70 factor [Caldicellulosiruptor
bescii DSM 6725]
gi|222455566|gb|ACM59828.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor bescii DSM 6725]
Length = 417
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 40/225 (17%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG +DP+R++L LLT +EE EL +I+
Sbjct: 138 LPEGIAIDDPVRMYLKEIGKIPLLTPEEEIELAKRIE----------------------- 174
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
++++L ANLRLVV +AK+Y GRG+ DL+QEG++GL
Sbjct: 175 -----------------QGDEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 217
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
+K+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +Q
Sbjct: 218 LKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQ 277
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E P E++A+ + + VEK+ ++ I + P+S++ P+ ++D+
Sbjct: 278 EKGREPTPEEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDS 322
>gi|26665386|dbj|BAC44904.1| principal sigma factor [Fischerella major NIES-592]
Length = 203
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 103/149 (69%), Gaps = 1/149 (0%)
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTI 393
+ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 394 RKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453
+AI SRTIRLP ++Y +S++ + +L QE P +E++A R+ +T+EKL ++
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIVK 120
Query: 454 ITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++P+S++ P+ ++D+ F+++ G
Sbjct: 121 SAQLPISLETPIGKEEDSRL-GDFIESDG 148
>gi|421711093|ref|ZP_16150437.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R030b]
gi|407213298|gb|EKE83156.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R030b]
Length = 681
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|408419807|ref|YP_006761221.1| RNA polymerase sigma70 factor RpoD [Desulfobacula toluolica Tol2]
gi|405107020|emb|CCK80517.1| RpoD: RNA polymerase sigma70 factor [Desulfobacula toluolica Tol2]
Length = 635
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 101/143 (70%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
S+ +L+ ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA WW
Sbjct: 397 SKRELVRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 456
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A ++ I +EK+
Sbjct: 457 IRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEMGKEPSPEEIAEKMEIPIEKV 516
Query: 449 ERLIFITRMPLSMQQPVWADQDT 471
R++ I + P+S++ P+ ++D+
Sbjct: 517 RRVLKIAKEPISLETPIGEEEDS 539
>gi|242279084|ref|YP_002991213.1| RpoD subfamily RNA polymerase sigma-70 subunit [Desulfovibrio
salexigens DSM 2638]
gi|242121978|gb|ACS79674.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfovibrio
salexigens DSM 2638]
Length = 585
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 104/149 (69%)
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384
S ++++LI ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G +F++Y
Sbjct: 343 SAMRAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTY 402
Query: 385 AYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGIT 444
A WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A R+
Sbjct: 403 ATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPSPEEIAERMDYP 462
Query: 445 VEKLERLIFITRMPLSMQQPVWADQDTTF 473
+EK+++++ I + P+S++ P+ ++D++
Sbjct: 463 LEKVKKVLKIAKEPISLETPIGDEEDSSL 491
>gi|428780485|ref|YP_007172271.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428694764|gb|AFZ50914.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 328
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 132/225 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E L Q+Q ++ L ++K +L+ + RE T EW + L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIILGKQVQKMMGLIEQKEELEKELEREVTEEEWVEKTEL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ +L+ + GN ++ K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 TSAELQKAIKDGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G +F++YAYWW+RQ I +AI Q +R IRLP +I L+K+ + +R Q+ +
Sbjct: 138 PTRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELAQKLGRNATP 197
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++A+ + + ++ + I R P+S+ V +QDT D
Sbjct: 198 TEIAKELELEPSQIREYLSIARQPISLDVRVGDNQDTELSELLED 242
>gi|2522316|gb|AAB81010.1| RNA polymerase principal sigma factor RpoD [Helicobacter pylori]
Length = 680
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 439 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 498
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 499 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 558
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 559 KVKNVIKVTKEPISLETPVGNDDDGKF 585
>gi|410462980|ref|ZP_11316526.1| RNA polymerase sigma factor, sigma-70 family [Desulfovibrio
magneticus str. Maddingley MBC34]
gi|409983919|gb|EKO40262.1| RNA polymerase sigma factor, sigma-70 family [Desulfovibrio
magneticus str. Maddingley MBC34]
Length = 588
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 105/150 (70%)
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
++ ++++LI ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G +F++
Sbjct: 345 NAAQRAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFST 404
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGI 443
YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A R+
Sbjct: 405 YATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIAERMDY 464
Query: 444 TVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+EK+++++ I + P+S++ P+ ++D++
Sbjct: 465 PLEKVKKVLKIAKEPISLETPIGDEEDSSL 494
>gi|420456345|ref|ZP_14955167.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp A-16]
gi|393076443|gb|EJB77196.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp A-16]
Length = 687
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 446 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 505
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 506 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 565
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 566 KVKNVIKVTKEPISLETPVGNDDDGKF 592
>gi|420434979|ref|ZP_14933979.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-27]
gi|393052747|gb|EJB53693.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-27]
Length = 679
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 438 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 497
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 498 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 557
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 558 KVKNVIKVTKEPISLETPVGNDDDGKF 584
>gi|419418282|ref|ZP_13958625.1| RNA polymerase sigma factor RpoD [Helicobacter pylori NCTC 11637 =
CCUG 17874]
gi|384374471|gb|EIE29863.1| RNA polymerase sigma factor RpoD [Helicobacter pylori NCTC 11637 =
CCUG 17874]
Length = 676
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 435 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 494
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 495 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 554
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 555 KVKNVIKVTKEPISLETPVGNDDDGKF 581
>gi|398786196|ref|ZP_10548973.1| RNA polymerase sigma factor [Streptomyces auratus AGR0001]
gi|396993817|gb|EJJ04874.1| RNA polymerase sigma factor [Streptomyces auratus AGR0001]
Length = 385
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 107/163 (65%)
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
DL + G ++ +LI +NLRLVV VAK+Y GRG+++ DL+QEG++GL+++VEKF
Sbjct: 137 DLDRLVVLGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYAR 196
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G +F++YA WW+RQ + +A+ +RTIR+P ++ L+++V+ +R +QE + P E++
Sbjct: 197 GYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEV 256
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
A +G+T E++ ++ + + P+S+ PV ++D D
Sbjct: 257 AAHLGLTGERVTEVLRLAQEPVSLHAPVGEEEDVALGDLIEDG 299
>gi|420411093|ref|ZP_14910229.1| RNA polymerase sigma factor [Helicobacter pylori NQ4200]
gi|393026306|gb|EJB27406.1| RNA polymerase sigma factor [Helicobacter pylori NQ4200]
Length = 670
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 429 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 488
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 489 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 548
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 549 KVKNVIKVTKEPISLETPVGNDDDGKF 575
>gi|344996804|ref|YP_004799147.1| RpoD subfamily RNA polymerase sigma-70 subunit
[Caldicellulosiruptor lactoaceticus 6A]
gi|343965023|gb|AEM74170.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor lactoaceticus 6A]
Length = 419
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 40/225 (17%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG +DP+R++L LLT +EE EL +I+
Sbjct: 140 LPEGIAIDDPVRMYLKEIGKIPLLTPEEEIELAKRIE----------------------- 176
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
++++L ANLRLVV +AK+Y GRG+ DL+QEG++GL
Sbjct: 177 -----------------QGDEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 219
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
+K+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +Q
Sbjct: 220 LKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQ 279
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E P E++A+ + + VEK+ ++ I + P+S++ P+ ++D+
Sbjct: 280 EKGREPTPEEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDS 324
>gi|257784627|ref|YP_003179844.1| RpoD subfamily RNA polymerase sigma-70 subunit [Atopobium parvulum
DSM 20469]
gi|257473134|gb|ACV51253.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Atopobium
parvulum DSM 20469]
Length = 455
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 130/218 (59%), Gaps = 9/218 (4%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R++L LLTA EE L +++E + Q E LIE +A
Sbjct: 151 GDPVRMYLKEIGKVDLLTASEEVHL------AMKIEAGTAASQKLEDFEDGLIELNRA-- 202
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
R L G ++++LI+ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 203 -EQRRLMRIESVGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 261
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+ P
Sbjct: 262 DYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDFGRDPT 321
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E++ +G++ +++ + I++ P+S++ P+ ++D+
Sbjct: 322 PEEIGSEMGMSPDRVREIQKISQEPVSLETPIGEEEDS 359
>gi|398345316|ref|ZP_10530019.1| RNA polymerase sigma-70 factor [Leptospira inadai serovar Lyme str.
10]
Length = 589
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 123/191 (64%), Gaps = 8/191 (4%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLI-EWAKAIGLSCRDLKSELHSGNSSREKLINANLRL 340
I+D+ E++ +++ + G I +W + I +K E + +E L+ ANLRL
Sbjct: 311 IKDIRNNERKLRRMEQEAGSSVQEIKDWGEKI------IKGEREIAQAKKE-LVKANLRL 363
Query: 341 VVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQH 400
VV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +F++YA WW+RQ I +AI
Sbjct: 364 VVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRAISDQ 423
Query: 401 SRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLS 460
+RTIR+P ++ ++KV+ RL++QE P E++A R+G V+K++ + + R P+S
Sbjct: 424 ARTIRVPVHMIEQVNKVIRETRLFVQEFGRDPSNEEIAERLGWPVQKVKAVKNVAREPIS 483
Query: 461 MQQPVWADQDT 471
++ PV +++D+
Sbjct: 484 LEIPVGSEEDS 494
>gi|452991307|emb|CCQ97365.1| RNA polymerase major sigma-43 factor (sigma-A) [Clostridium
ultunense Esp]
Length = 374
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 126/223 (56%), Gaps = 42/223 (18%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G + +DP+R++L LLTA+EE EL AQ
Sbjct: 98 GINVDDPVRMYLKEIGKIPLLTAEEEVEL-AQ---------------------------- 128
Query: 310 KAIGLSCRDLKSELHSGNS-SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
+ +G+ +++KL ANLRLVV +AK+Y GRG+ DL+QEG++GLMK
Sbjct: 129 ------------RMEAGDEIAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLMK 176
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +QE
Sbjct: 177 AVEKFDYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLVQEL 236
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
P E++A+ + + VEK+ ++ I + P+S++ P+ ++D+
Sbjct: 237 GRDPTPEEIAKEMNMEVEKVREIMKIAQEPVSLETPIGEEEDS 279
>gi|420439773|ref|ZP_14938733.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-30]
gi|393057799|gb|EJB58695.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-30]
Length = 681
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|420408080|ref|ZP_14907239.1| RNA polymerase sigma factor [Helicobacter pylori NQ4216]
gi|393025565|gb|EJB26671.1| RNA polymerase sigma factor [Helicobacter pylori NQ4216]
Length = 679
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 438 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 497
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 498 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 557
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 558 KVKNVIKVTKEPISLETPVGNDDDGKF 584
>gi|406980501|gb|EKE02092.1| RNA polymerase sigma factor [uncultured bacterium]
Length = 348
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 112/187 (59%), Gaps = 16/187 (8%)
Query: 298 QFGREPTLI-----EWAKAIG-LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGR 351
Q GR P LI E AK+I +C + ++EKL+NANLRLVV +AK+Y GR
Sbjct: 77 QIGRIPLLIPDEEIELAKSIKETNC----------SIAKEKLVNANLRLVVSIAKKYIGR 126
Query: 352 GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIY 411
G+S DL+QEG+MGLM++ EKF G +F++YA WW++Q I + I SRTIRLP ++
Sbjct: 127 GLSFLDLIQEGNMGLMRAAEKFDYAKGYKFSTYATWWIQQAITRGIADKSRTIRLPVHMI 186
Query: 412 TLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+ ++ +A R E N P KE++A R+ I + KL +I + +S++ P+ ++
Sbjct: 187 ETIGRIKKATRDLTNELNRKPTKEEIAERLDIPLSKLRAVIKSAQATISLETPLNKKEEN 246
Query: 472 TFQSTFL 478
S FL
Sbjct: 247 AKISDFL 253
>gi|398347296|ref|ZP_10531999.1| RNA polymerase sigma-70 factor [Leptospira broomii str. 5399]
Length = 589
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 123/191 (64%), Gaps = 8/191 (4%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLI-EWAKAIGLSCRDLKSELHSGNSSREKLINANLRL 340
I+D+ E++ +++ + G I +W + I +K E + +E L+ ANLRL
Sbjct: 311 IKDIRNNERKLRRMEQEAGSSVQEIKDWGEKI------IKGEREIAQAKKE-LVKANLRL 363
Query: 341 VVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQH 400
VV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +F++YA WW+RQ I +AI
Sbjct: 364 VVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRAISDQ 423
Query: 401 SRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLS 460
+RTIR+P ++ ++KV+ RL++QE P E++A R+G V+K++ + + R P+S
Sbjct: 424 ARTIRVPVHMIEQVNKVIRETRLFVQEFGRDPSNEEIAERLGWPVQKVKAVKNVAREPIS 483
Query: 461 MQQPVWADQDT 471
++ PV +++D+
Sbjct: 484 LEIPVGSEEDS 494
>gi|359689819|ref|ZP_09259820.1| RNA polymerase sigma-70 factor [Leptospira licerasiae serovar
Varillal str. MMD0835]
gi|418748064|ref|ZP_13304356.1| RNA polymerase sigma factor RpoD [Leptospira licerasiae str.
MMD4847]
gi|418757607|ref|ZP_13313794.1| RNA polymerase sigma factor RpoD [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|384115384|gb|EIE01642.1| RNA polymerase sigma factor RpoD [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|404275133|gb|EJZ42447.1| RNA polymerase sigma factor RpoD [Leptospira licerasiae str.
MMD4847]
Length = 588
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 123/191 (64%), Gaps = 8/191 (4%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLI-EWAKAIGLSCRDLKSELHSGNSSREKLINANLRL 340
I+D+ E++ +++ + G I +W + I +K E + +E L+ ANLRL
Sbjct: 310 IKDIRNNERKLRRMEQEAGSSVQEIKDWGEKI------IKGEREIAQAKKE-LVKANLRL 362
Query: 341 VVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQH 400
VV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +F++YA WW+RQ I +AI
Sbjct: 363 VVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRAISDQ 422
Query: 401 SRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLS 460
+RTIR+P ++ ++KV+ RL++QE P E++A R+G V+K++ + + R P+S
Sbjct: 423 ARTIRVPVHMIEQVNKVIRETRLFVQEFGRDPSNEEIAERLGWPVQKVKAVKNVAREPIS 482
Query: 461 MQQPVWADQDT 471
++ PV +++D+
Sbjct: 483 LEIPVGSEEDS 493
>gi|441513649|ref|ZP_20995477.1| putative RNA polymerase sigma factor [Gordonia amicalis NBRC
100051]
gi|441451595|dbj|GAC53438.1| putative RNA polymerase sigma factor [Gordonia amicalis NBRC
100051]
Length = 338
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 129/227 (56%), Gaps = 15/227 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL QI+ + L ++ L +
Sbjct: 40 DLVRVYLNGIGRTALLNAEQEVELAKQIE---------AGLYAKH----VLATKKRLSAT 86
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 87 KKRDLATIVREGEAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 146
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKR-LYIQEGNHSPD 433
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR L+ Q G + D
Sbjct: 147 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATD 206
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E LA GI EK+ L+ +R P+S+ PV +D++ DA
Sbjct: 207 DE-LASESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDA 252
>gi|420498649|ref|ZP_14997206.1| RNA polymerase sigma factor [Helicobacter pylori Hp P-26]
gi|393152628|gb|EJC52924.1| RNA polymerase sigma factor [Helicobacter pylori Hp P-26]
Length = 679
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 438 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 497
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 498 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 557
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 558 KVKNVIKVTKEPISLETPVGNDDDGKF 584
>gi|420525776|ref|ZP_15024179.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-15b]
gi|393133797|gb|EJC34213.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-15b]
Length = 679
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 438 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 497
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 498 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 557
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 558 KVKNVIKVTKEPISLETPVGNDDDGKF 584
>gi|420492008|ref|ZP_14990584.1| RNA polymerase sigma factor [Helicobacter pylori Hp P-15]
gi|393108703|gb|EJC09237.1| RNA polymerase sigma factor [Helicobacter pylori Hp P-15]
Length = 679
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 103/148 (69%)
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 437 SDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYA 496
Query: 386 YWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITV 445
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG+++
Sbjct: 497 TWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSL 556
Query: 446 EKLERLIFITRMPLSMQQPVWADQDTTF 473
+K++ +I +T+ P+S++ PV D D F
Sbjct: 557 DKVKNVIKVTKEPISLETPVGNDDDGKF 584
>gi|420444722|ref|ZP_14943639.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-42]
gi|393064342|gb|EJB65181.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-42]
Length = 681
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|420454253|ref|ZP_14953087.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp A-8]
gi|393068726|gb|EJB69528.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp A-8]
Length = 681
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|420431668|ref|ZP_14930687.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-16]
gi|393049261|gb|EJB50227.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-16]
Length = 681
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|385219956|ref|YP_005781428.1| RNA polymerase sigma factor RpoD [Helicobacter pylori India7]
gi|317008763|gb|ADU79343.1| RNA polymerase sigma factor RpoD [Helicobacter pylori India7]
Length = 676
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 435 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 494
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 495 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 554
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 555 KVKNVIKVTKEPISLETPVGNDDDGKF 581
>gi|238927759|ref|ZP_04659519.1| possible DNA-directed RNA polymerase sigma subunit SigA
[Selenomonas flueggei ATCC 43531]
gi|238884475|gb|EEQ48113.1| possible DNA-directed RNA polymerase sigma subunit SigA
[Selenomonas flueggei ATCC 43531]
Length = 382
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 40/223 (17%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
EG +DP+R++L LLTA+EE EL +++
Sbjct: 104 EGVALDDPVRMYLKEIGRVPLLTAEEEVELARRME------------------------- 138
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
++R +L ANLRLVV +AK+Y GRG+ DL+QEG++GL+K
Sbjct: 139 ---------------AGDEAARHRLEEANLRLVVSIAKRYAGRGMMFLDLIQEGNLGLLK 183
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K + R +QE
Sbjct: 184 AVEKFDYSKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKYIRISRQLLQEL 243
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
P E++A R+G++V ++ ++ I++ P+S++ P+ ++DT
Sbjct: 244 GRDPTPEEIAHRMGLSVARVREIMKISQEPVSLETPIGEEEDT 286
>gi|2267165|gb|AAC64856.1| sigma 80 [Helicobacter pylori]
Length = 685
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 444 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 503
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 504 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 563
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 564 KVKNVIKVTKEPISLETPVGNDDDGKF 590
>gi|407647092|ref|YP_006810851.1| RNA polymerase sigma factor SigB [Nocardia brasiliensis ATCC
700358]
gi|407309976|gb|AFU03877.1| RNA polymerase sigma factor SigB [Nocardia brasiliensis ATCC
700358]
Length = 322
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 130/218 (59%), Gaps = 17/218 (7%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I+ + L +Q L+E K +
Sbjct: 24 DLVRVYLNGIGRTALLTAADEVELAKRIE---------AGLYAQH-----LLETGKRLSA 69
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 70 TRKRDLALIVREGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 129
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKR-LYIQEGNHSP 432
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR L+ Q G +
Sbjct: 130 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREAT 189
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
D E LA GI V+K+ L+ +R P+S+ PV D++
Sbjct: 190 DAE-LANESGIPVDKISDLLDHSRDPVSLDMPVGNDEE 226
>gi|401679368|ref|ZP_10811299.1| RNA polymerase sigma factor RpoD [Veillonella sp. ACP1]
gi|400219589|gb|EJO50453.1| RNA polymerase sigma factor RpoD [Veillonella sp. ACP1]
Length = 388
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 122/218 (55%), Gaps = 28/218 (12%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LL+ADEE L QI+ G
Sbjct: 105 DDPVRMYLKEIGRVPLLSADEEIVLAKQIE----------------------------AG 136
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
E+ +++KL++ANLRLVV +AK+Y GRG+ DL+QEG++GL+K+V+KF
Sbjct: 137 AEEDATYKEIQLSKKAKKKLVDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVDKF 196
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +Q+ P
Sbjct: 197 DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQDKGREPT 256
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E++A +GIT E++ + I + P+S++ P+ ++D+
Sbjct: 257 PEEIAEGMGITAERVREIQKIAQEPVSLETPIGEEEDS 294
>gi|420495170|ref|ZP_14993735.1| RNA polymerase sigma factor [Helicobacter pylori Hp P-23]
gi|393113303|gb|EJC13822.1| RNA polymerase sigma factor [Helicobacter pylori Hp P-23]
Length = 680
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 439 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 498
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 499 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 558
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 559 KVKNVIKVTKEPISLETPVGNDDDGKF 585
>gi|420530608|ref|ZP_15028984.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-28b]
gi|393139387|gb|EJC39765.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-28b]
Length = 681
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|420496972|ref|ZP_14995533.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-25]
gi|420527327|ref|ZP_15025722.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-25c]
gi|420529152|ref|ZP_15027540.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-25d]
gi|393114669|gb|EJC15184.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-25]
gi|393135294|gb|EJC35696.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-25c]
gi|393138266|gb|EJC38648.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-25d]
Length = 672
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 431 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 490
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 491 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 550
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 551 KVKNVIKVTKEPISLETPVGNDDDGKF 577
>gi|254778811|ref|YP_003056916.1| RNA polymerase sigma factor RpoD [Helicobacter pylori B38]
gi|254000722|emb|CAX28640.1| RNA polymerase sigma factor rpoD (Sigma-70) [Helicobacter pylori
B38]
Length = 679
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 438 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 497
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 498 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 557
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 558 KVKNVIKVTKEPISLETPVGNDDDGKF 584
>gi|309791233|ref|ZP_07685765.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG-6]
gi|308226795|gb|EFO80491.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG6]
Length = 391
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 125/214 (58%), Gaps = 17/214 (7%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ--DLIRLEKEKSKLQSQFGREPTLIEWAKA 311
+DP+R++L LLTA++E EL ++ D+ R ++ + S GRE +E A A
Sbjct: 92 DDPVRMYLQEIGQVPLLTAEKEVELAKSMEAGDIARQRIDREEYTS--GRERMELERAYA 149
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
+G C SR+ LI ANLRLVV +AK+Y G+++ DL+QEG++GLM++VE
Sbjct: 150 LG--C-----------ESRQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVE 196
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHS 431
KF G +F++YA WW+RQ I +AI SRTIRLP ++ +S+V Q
Sbjct: 197 KFDYTKGHKFSTYATWWIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHKLQQSMQRE 256
Query: 432 PDKEDLARRVGITVEKLERLIFITRMPLSMQQPV 465
P E++A +GI+ K+ R + + PLS++ PV
Sbjct: 257 PTPEEIAEAMGISAGKVRRTLEASMHPLSLEMPV 290
>gi|148242803|ref|YP_001227960.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851113|emb|CAK28607.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 309
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 126/220 (57%), Gaps = 18/220 (8%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+ +L LLT EE EL Q+Q ++ TL+E +
Sbjct: 17 NDPVSWYLSSIGRVPLLTPAEEIELGNQVQTMM-----------------TLVEQGEEAT 59
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ R+ K + G S+E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 60 YTARE-KKLIRVGRRSKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKF 118
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
P G +F++YA+WW+RQ++ +AI SRTIRLP ++ L+ V +A + P
Sbjct: 119 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLATVRKATMDLAHKLGAMPS 178
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+ ++A +G+ +E+L+ L+ S+ P+ ++ +F
Sbjct: 179 RREIATELGMGLEELDGLLRQALTTSSLDAPISGEEGRSF 218
>gi|23978340|dbj|BAC21139.1| principal sigma factor [Stanieria cyanosphaera str. PCC 7437]
Length = 203
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 102/149 (68%), Gaps = 1/149 (0%)
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTI 393
+ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 394 RKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453
+AI SRTIRLP ++Y +S++ + +L QE P +E++A R+ +T+EKL +
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 454 ITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++P+S++ P+ ++D+ F++A G
Sbjct: 121 SAQLPISLETPIGKEEDSRL-GDFIEADG 148
>gi|116748652|ref|YP_845339.1| RpoD family RNA polymerase sigma factor [Syntrophobacter
fumaroxidans MPOB]
gi|116697716|gb|ABK16904.1| RNA polymerase, sigma 70 subunit, RpoD family [Syntrophobacter
fumaroxidans MPOB]
Length = 599
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 109/163 (66%)
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
++++ L R ++ L ++ +LI ANLRLVV +AK+Y RG+ DL+QEG++GLMK
Sbjct: 341 SRSLRLILRRVEDGLIRAKLAKSELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMK 400
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEG 428
+V+KF+ Q G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE
Sbjct: 401 AVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEL 460
Query: 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
P E++A ++ VEK+ +++ I + P+S++ P+ ++D+
Sbjct: 461 GREPTPEEIAEKMEFPVEKVRKVLKIAKEPISLETPIGEEEDS 503
>gi|420469986|ref|ZP_14968697.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-11]
gi|393087032|gb|EJB87702.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-11]
Length = 680
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 439 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 498
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 499 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 558
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 559 KVKNVIKVTKEPISLETPVGNDDDGKF 585
>gi|420463073|ref|ZP_14961851.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-4]
gi|393080601|gb|EJB81326.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-4]
Length = 681
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|303327390|ref|ZP_07357831.1| RNA polymerase sigma-70 factor [Desulfovibrio sp. 3_1_syn3]
gi|302862330|gb|EFL85263.1| RNA polymerase sigma-70 factor [Desulfovibrio sp. 3_1_syn3]
Length = 589
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 107/155 (69%), Gaps = 4/155 (2%)
Query: 323 LHSGNSS----REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 378
+ GN++ +++LI +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G
Sbjct: 341 IKRGNTAAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRG 400
Query: 379 CRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLA 438
+F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A
Sbjct: 401 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIA 460
Query: 439 RRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
R+ VEK+++++ I + P+S++ P+ ++D++
Sbjct: 461 ERMEYPVEKVKKVLKIAKEPISLETPIGDEEDSSL 495
>gi|354582249|ref|ZP_09001151.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Paenibacillus
lactis 154]
gi|353199648|gb|EHB65110.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Paenibacillus
lactis 154]
Length = 376
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 131/250 (52%), Gaps = 42/250 (16%)
Query: 224 KVSKPQVTNHETYNSRKASVKKKLS--EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQ 281
+VS +HE++++ LS G NDP+R++L LL+AD+E EL +
Sbjct: 72 EVSHRASEDHESHDNEDFGFDDDLSLPPGIKINDPVRMYLKEIGRVPLLSADDEIELANR 131
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLV 341
I+ ++ +L ANLRLV
Sbjct: 132 IE----------------------------------------QGDEEAKRRLAEANLRLV 151
Query: 342 VHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHS 401
V +AK+Y GRG+ DL+QEG+MGL+K+VEKF + G +F++YA WW+RQ I +AI +
Sbjct: 152 VSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYKKGFKFSTYATWWIRQAITRAIADQA 211
Query: 402 RTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSM 461
RTIR+P ++ ++K++ R +QE P E++A + ++VEK+ ++ I + P+S+
Sbjct: 212 RTIRIPVHMVETINKLIRVSRQLLQELGREPSPEEIAAEMELSVEKVREIMKIAQEPVSL 271
Query: 462 QQPVWADQDT 471
+ P+ + D+
Sbjct: 272 ETPIGEEDDS 281
>gi|385227857|ref|YP_005787790.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Puno120]
gi|344334295|gb|AEN14739.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Puno120]
Length = 677
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 436 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 495
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 496 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 555
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 556 KVKNVIKVTKEPISLETPVGNDDDGKF 582
>gi|420502059|ref|ZP_15000600.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp P-41]
gi|393153339|gb|EJC53632.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp P-41]
Length = 672
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 431 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 490
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 491 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 550
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 551 KVKNVIKVTKEPISLETPVGNDDDGKF 577
>gi|386745609|ref|YP_006218826.1| RNA polymerase sigma factor RpoD [Helicobacter pylori HUP-B14]
gi|384551858|gb|AFI06806.1| RNA polymerase sigma factor RpoD [Helicobacter pylori HUP-B14]
Length = 680
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 439 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 498
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 499 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 558
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 559 KVKNVIKVTKEPISLETPVGNDDDGKF 585
>gi|227504896|ref|ZP_03934945.1| RNA polymerase sigma factor SigB [Corynebacterium striatum ATCC
6940]
gi|227198489|gb|EEI78537.1| RNA polymerase sigma factor SigB [Corynebacterium striatum ATCC
6940]
Length = 337
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 13/226 (5%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL+A++E EL +I+ L +++ L K
Sbjct: 39 DLVRVYLNGIGKTALLSAEDEVELAQRIE---------VGLYAEY----KLANAEKITRA 85
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDLK + G +R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 86 EKRDLKILVREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 145
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q
Sbjct: 146 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATN 205
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E+LA GI K+E L+ +R P+S+ PV D++ DA
Sbjct: 206 EELAEESGIEESKIEMLLRQSRDPVSLDMPVGTDEEAPLGDFIEDA 251
>gi|436842015|ref|YP_007326393.1| RNA polymerase, sigma 70 (sigma D) factor [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
gi|432170921|emb|CCO24292.1| RNA polymerase, sigma 70 (sigma D) factor [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
Length = 585
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 104/149 (69%)
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384
S ++++LI ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G +F++Y
Sbjct: 343 SAMQAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTY 402
Query: 385 AYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGIT 444
A WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A R+
Sbjct: 403 ATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPAPEEIAERMDYP 462
Query: 445 VEKLERLIFITRMPLSMQQPVWADQDTTF 473
+EK+++++ I + P+S++ P+ ++D++
Sbjct: 463 LEKVKKVLKIAKEPISLETPIGDEEDSSL 491
>gi|420429745|ref|ZP_14928775.1| RNA polymerase sigma factor [Helicobacter pylori Hp A-20]
gi|393048364|gb|EJB49331.1| RNA polymerase sigma factor [Helicobacter pylori Hp A-20]
Length = 672
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 431 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 490
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 491 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 550
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 551 KVKNVIKVTKEPISLETPVGNDDDGKF 577
>gi|23978350|dbj|BAC21142.1| principal sigma factor [Xenococcus sp. PCC 7307]
Length = 203
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 102/149 (68%), Gaps = 1/149 (0%)
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTI 393
+ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 394 RKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453
+AI SRTIRLP ++Y +S++ + +L QE P +E++A R+ +T+EKL +
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQERGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 454 ITRMPLSMQQPVWADQDTTFQSTFLDAAG 482
++P+S++ P+ ++D+ F++A G
Sbjct: 121 SAQLPISLETPIGKEEDSRL-GDFIEADG 148
>gi|420424672|ref|ZP_14923736.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp A-5]
gi|393043259|gb|EJB44263.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp A-5]
Length = 681
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|383819225|ref|ZP_09974501.1| RNA polymerase sigma factor SigB [Mycobacterium phlei RIVM601174]
gi|383337196|gb|EID15577.1| RNA polymerase sigma factor SigB [Mycobacterium phlei RIVM601174]
Length = 319
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 133/228 (58%), Gaps = 17/228 (7%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L+E K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLETRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ R+L + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 NRKRELAEVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKR-LYIQEGNHSP 432
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR ++ Q G +
Sbjct: 127 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQQLGREAT 186
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
D E+LA GI VEK+ L+ +R P+S+ PV D++ DA
Sbjct: 187 D-EELAAESGIPVEKINDLLEHSRDPVSLDMPVGNDEEAPLGDFIEDA 233
>gi|227486750|ref|ZP_03917066.1| DNA-directed RNA polymerase sigma subunit RpoD [Anaerococcus
lactolyticus ATCC 51172]
gi|227235220|gb|EEI85235.1| DNA-directed RNA polymerase sigma subunit RpoD [Anaerococcus
lactolyticus ATCC 51172]
Length = 601
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 102/153 (66%)
Query: 319 LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 378
LK ++ ++EKL NLRLVV +AK+Y GRG+S DL+QEG+MGLMK+V+K+ G
Sbjct: 355 LKVDVLKSQRAKEKLAETNLRLVVSIAKKYVGRGMSFLDLIQEGNMGLMKAVDKYDYNRG 414
Query: 379 CRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLA 438
+F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+ P E++A
Sbjct: 415 FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLVQDLGRDPSNEEIA 474
Query: 439 RRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+GI VEK+ + I + P+S++ P+ + D+
Sbjct: 475 DIMGIEVEKVSEIRKIAQEPVSLETPIGEEDDS 507
>gi|420518879|ref|ZP_15017324.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp H-5b]
gi|393128782|gb|EJC29222.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp H-5b]
Length = 681
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|420490099|ref|ZP_14988685.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp P-13]
gi|420523939|ref|ZP_15022349.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-13b]
gi|393109442|gb|EJC09973.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp P-13]
gi|393133098|gb|EJC33515.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-13b]
Length = 681
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|420451425|ref|ZP_14950277.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp A-6]
gi|393070283|gb|EJB71073.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp A-6]
Length = 681
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|119493081|ref|ZP_01624006.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
gi|119452826|gb|EAW34001.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
Length = 331
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 125/211 (59%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL A+EE EL QI+ L+ ++ + +L + GR P E A A GLS +L + G
Sbjct: 33 LLKANEEIELARQIKALVTFKELEEELTHELGRCPQSSELATATGLSEAELNHQFQQGII 92
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+++K+I++NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYWW
Sbjct: 93 AKQKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWW 152
Query: 389 VRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448
+RQ I + I RT+RLP ++ L+K+ + + P +++LA + I+ ++L
Sbjct: 153 IRQGITRTIANQGRTVRLPVHVVEQLNKLQGIHQDLRRSLRRKPTEDELAEALSISPQQL 212
Query: 449 ERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
L + R LS+ V +++++ D
Sbjct: 213 RLLEQVRRKSLSLNHRVGSEENSELMDLLED 243
>gi|434389143|ref|YP_007099754.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428020133|gb|AFY96227.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 422
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 113/202 (55%), Gaps = 22/202 (10%)
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------------------SRE 331
+L +Q G P+ WA G++ +LK L +G ++E
Sbjct: 126 RLTAQLGHRPSPERWASTAGIALAELKPRLAAGKQRWAELAQMTVAEIDALQLAGTRAKE 185
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
+I ANLRLVV VAK+YQ RG+ L DL+QEG+MGL ++V+KF P G RF++YAYWW+RQ
Sbjct: 186 HMIKANLRLVVSVAKKYQNRGLELLDLIQEGTMGLERAVDKFDPTKGYRFSTYAYWWIRQ 245
Query: 392 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451
I +AI SR IRLP +I L+K+ + +R E P E++A+ + +T+ +L+ +
Sbjct: 246 GITRAIATQSRNIRLPVHITEKLNKIKKVQRELSIETGRPPRLEEVAKALDMTLVQLQEV 305
Query: 452 IFITRMPLSMQQPVWADQDTTF 473
+ +S+ V D+DT
Sbjct: 306 LMRVPRSVSLDVKVGKDRDTEL 327
>gi|420412956|ref|ZP_14912081.1| RNA polymerase sigma factor [Helicobacter pylori NQ4099]
gi|393030717|gb|EJB31795.1| RNA polymerase sigma factor [Helicobacter pylori NQ4099]
Length = 671
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 430 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 489
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 490 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 549
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 550 KVKNVIKVTKEPISLETPVGNDDDGKF 576
>gi|186687052|ref|YP_001870195.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186469355|gb|ACC85154.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 316
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 126/211 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT D+E +Q ++ +E+++S L Q R+PT +E A ++G
Sbjct: 7 DSVRSYLKEIGRYPLLTPDQEITNARLVQQMMAVEEQRSNLALQLNRQPTDLELATSLGQ 66
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ +L+S + G +++K++ ANLRLVV VAK+YQ + DLLQEG++GL + +EKF
Sbjct: 67 NEAELQSVIQQGQKAKQKMVTANLRLVVSVAKKYQNYSLDFLDLLQEGALGLQRGIEKFD 126
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
P G + ++Y YWW+ Q+I +A+ SRTIRLP +I L+K+ ++ Q P
Sbjct: 127 PNKGYKLSTYVYWWITQSITRAVADKSRTIRLPIHINEKLNKIRRVQQQLSQSLGRPPVV 186
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPV 465
++A + ++ ++ + I++ +S+++ V
Sbjct: 187 AEIAESLNLSPNQIREYLQISKPLVSLEKRV 217
>gi|420476762|ref|ZP_14975425.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-23]
gi|393095187|gb|EJB95792.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-23]
Length = 672
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 431 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 490
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 491 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 550
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 551 KVKNVIKVTKEPISLETPVGNDDDGKF 577
>gi|420473492|ref|ZP_14972170.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-19]
gi|393090620|gb|EJB91253.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-19]
Length = 681
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|386392648|ref|ZP_10077429.1| RNA polymerase sigma factor, sigma-70 family [Desulfovibrio sp.
U5L]
gi|385733526|gb|EIG53724.1| RNA polymerase sigma factor, sigma-70 family [Desulfovibrio sp.
U5L]
Length = 588
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 105/150 (70%)
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
++ ++++LI ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G +F++
Sbjct: 345 NAAQRAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFST 404
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGI 443
YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A R+
Sbjct: 405 YATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIAERMDY 464
Query: 444 TVEKLERLIFITRMPLSMQQPVWADQDTTF 473
+EK+++++ I + P+S++ P+ ++D++
Sbjct: 465 PLEKVKKVLKIAKEPISLETPIGDEEDSSL 494
>gi|383749148|ref|YP_005424251.1| RNA polymerase sigma factor RpoD [Helicobacter pylori ELS37]
gi|380873894|gb|AFF19675.1| RNA polymerase sigma factor RpoD [Helicobacter pylori ELS37]
Length = 670
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 429 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 488
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 489 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 548
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 549 KVKNVIKVTKEPISLETPVGNDDDGKF 575
>gi|385218356|ref|YP_005779831.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Gambia94/24]
gi|317013514|gb|ADU80950.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Gambia94/24]
Length = 681
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|296139548|ref|YP_003646791.1| RpoD subfamily RNA polymerase sigma-70 subunit [Tsukamurella
paurometabola DSM 20162]
gi|296027682|gb|ADG78452.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tsukamurella
paurometabola DSM 20162]
Length = 330
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 132/219 (60%), Gaps = 17/219 (7%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL +I+ + L +Q L++ K +
Sbjct: 32 DLVRVYLNGIGRTALLTAEDEVELAKRIE---------AGLYAQH-----LLDTKKRLSA 77
Query: 315 SC-RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
S RDL + G ++R+ L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 78 SKKRDLAFIVRDGQAARQHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 137
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKR-LYIQEGNHSP 432
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ +R L+ Q G +
Sbjct: 138 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIRRELHQQLGREAT 197
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
D E LA GI EK+ L+ +R P+S+ PV +D++
Sbjct: 198 DAE-LAAESGIPAEKIADLMDHSRDPVSLDMPVGSDEEA 235
>gi|420441451|ref|ZP_14940397.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-36]
gi|393060512|gb|EJB61384.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-36]
Length = 681
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|384890470|ref|YP_005764603.1| RNA polymerase sigma factor [Helicobacter pylori 908]
gi|385223142|ref|YP_005783068.1| RNA polymerase sigma factor [Helicobacter pylori 2017]
gi|385230990|ref|YP_005790909.1| RNA polymerase sigma factor [Helicobacter pylori 2018]
gi|307636779|gb|ADN79229.1| RNA polymerase sigma factor [Helicobacter pylori 908]
gi|325995367|gb|ADZ50772.1| RNA polymerase sigma factor [Helicobacter pylori 2018]
gi|325996964|gb|ADZ49172.1| RNA polymerase sigma factor [Helicobacter pylori 2017]
Length = 681
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|139436983|ref|ZP_01771143.1| Hypothetical protein COLAER_00117 [Collinsella aerofaciens ATCC
25986]
gi|133776630|gb|EBA40450.1| RNA polymerase sigma factor RpoD [Collinsella aerofaciens ATCC
25986]
Length = 454
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 133/220 (60%), Gaps = 9/220 (4%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R++L LLTA EE +L +I+ + + KL++ E +E +A
Sbjct: 150 GDPVRMYLKEIGKVDLLTASEEVDLAMKIEAGL---EATEKLEAADAGE---LELTRA-- 201
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
R L + G +++ LI+ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 202 -EIRRLTRIENVGLEAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 260
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPD 433
Q G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +Q+ P
Sbjct: 261 DYQKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQDLGRDPT 320
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
E++ + ++ +++ + I++ P+S++ P+ ++D+
Sbjct: 321 PEEIGAEMDMSADRVREIQKISQEPVSLETPIGEEEDSQL 360
>gi|421709486|ref|ZP_16148846.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R018c]
gi|421722740|ref|ZP_16161999.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R056a]
gi|407212043|gb|EKE81908.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R018c]
gi|407226524|gb|EKE96290.1| RNA polymerase sigma factor RpoD [Helicobacter pylori R056a]
Length = 676
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 435 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 494
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 495 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 554
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 555 KVKNVIKVTKEPISLETPVGNDDDGKF 581
>gi|385229404|ref|YP_005789320.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Puno135]
gi|344335842|gb|AEN17803.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Puno135]
Length = 672
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 431 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 490
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 491 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 550
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 551 KVKNVIKVTKEPISLETPVGNDDDGKF 577
>gi|420503652|ref|ZP_15002182.1| RNA polymerase sigma factor [Helicobacter pylori Hp P-62]
gi|393155041|gb|EJC55318.1| RNA polymerase sigma factor [Helicobacter pylori Hp P-62]
Length = 673
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 432 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 491
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 492 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 551
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 552 KVKNVIKVTKEPISLETPVGNDDDGKF 578
>gi|420438121|ref|ZP_14937098.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-29]
gi|393057496|gb|EJB58398.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-29]
Length = 677
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 436 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 495
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 496 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 555
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 556 KVKNVIKVTKEPISLETPVGNDDDGKF 582
>gi|323450165|gb|EGB06048.1| hypothetical protein AURANDRAFT_11909, partial [Aureococcus
anophagefferens]
Length = 325
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 116/192 (60%), Gaps = 3/192 (1%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L LL+ DEE L ++Q L+ L ++S+L++ GREP+ EWA A G +
Sbjct: 6 RVYLPERAAEPLLSLDEEVALATEVQALVALRAKRSELKAALGREPSGGEWANATGYANY 65
Query: 318 D-LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQ 376
L++ + + RE+LI NLRLV+ VAK+Y G++ DL QEG+ GL K+ ++F P
Sbjct: 66 GALRTRMGHMKACREELIQRNLRLVLSVAKRYGDCGLAFTDLCQEGNFGLAKACDRFDPS 125
Query: 377 AGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAK-RLYIQEGNHSPDKE 435
G RF++YA WW+RQ + A+ SRTIRLP +++ L ++ + K L Q G + D E
Sbjct: 126 KGFRFSTYAVWWIRQAVAHAVAHQSRTIRLPTHVHEKLRRMKKHKVALEKQTGRDATDDE 185
Query: 436 DLARRVGITVEK 447
+AR + + +K
Sbjct: 186 -IAREMSLDADK 196
>gi|312143990|ref|YP_003995436.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halanaerobium
hydrogeniformans]
gi|311904641|gb|ADQ15082.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halanaerobium
hydrogeniformans]
Length = 360
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 121/222 (54%), Gaps = 40/222 (18%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G +DP+R++L LLTADEE L R+E+ EWA
Sbjct: 84 GVGIDDPVRMYLKEIGKVDLLTADEEVMLAK------RMEQGD--------------EWA 123
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
K ++L+ ANLRLVV +AK+Y GRG+ DL+QEG+MGLMK+
Sbjct: 124 K--------------------QQLVEANLRLVVSIAKKYVGRGMLFLDLIQEGNMGLMKA 163
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGN 429
VEKF G +F++YA WW+RQ I ++I +RTIR+P ++ ++K++ R +QE
Sbjct: 164 VEKFDYTKGYKFSTYATWWIRQAITRSIADQARTIRVPVHMVETINKLIRVSRQLLQEKG 223
Query: 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
P E++ + I+ EK+ ++ I + P+S++ P+ ++D+
Sbjct: 224 REPKPEEIGEEMDISAEKVREIMKIAQEPVSLETPIGEEEDS 265
>gi|303233350|ref|ZP_07320019.1| RNA polymerase sigma factor RpoD [Atopobium vaginae PB189-T1-4]
gi|302480479|gb|EFL43570.1| RNA polymerase sigma factor RpoD [Atopobium vaginae PB189-T1-4]
Length = 441
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 131/221 (59%), Gaps = 11/221 (4%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGR-EPTLIEWAKAI 312
DP+R++L LLTAD+E L +I+ +K Q + E IE +++
Sbjct: 137 GDPVRMYLKEIGKVDLLTADDEVHLAMKIE-------AGNKATEQLEKAEKGEIELSRS- 188
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
R L E G +++ L +ANLRL V +AK+Y GRG+ DL+QEG++GL+++VEK
Sbjct: 189 --EMRRLMREEQVGLDAKQALTSANLRLTVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEK 246
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ +R +QE P
Sbjct: 247 FDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQELGRDP 306
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
E++ + + ++ +K+ + I++ P+S++ P+ ++D++
Sbjct: 307 SPEEIGKEMNMSPDKIREIQKISQEPVSLETPIGEEEDSSL 347
>gi|420446391|ref|ZP_14945288.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-43]
gi|393065263|gb|EJB66092.1| RNA polymerase sigma factor [Helicobacter pylori Hp H-43]
Length = 666
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 425 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 484
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 485 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 544
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 545 KVKNVIKVTKEPISLETPVGNDDDGKF 571
>gi|220904357|ref|YP_002479669.1| RpoD subfamily RNA polymerase sigma-70 subunit [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219868656|gb|ACL48991.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 589
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 107/155 (69%), Gaps = 4/155 (2%)
Query: 323 LHSGNSS----REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 378
+ GN++ +++LI +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G
Sbjct: 341 IKRGNTAAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRG 400
Query: 379 CRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLA 438
+F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A
Sbjct: 401 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIA 460
Query: 439 RRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
R+ VEK+++++ I + P+S++ P+ ++D++
Sbjct: 461 ERMEYPVEKVKKVLKIAKEPISLETPIGDEEDSSL 495
>gi|420448102|ref|ZP_14946986.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-44]
gi|393066915|gb|EJB67733.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp H-44]
Length = 681
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|444374441|ref|ZP_21173747.1| RNA polymerase sigma factor RpoD [Helicobacter pylori A45]
gi|443621096|gb|ELT81536.1| RNA polymerase sigma factor RpoD [Helicobacter pylori A45]
Length = 670
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 429 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 488
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 489 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 548
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 549 KVKNVIKVTKEPISLETPVGNDDDGKF 575
>gi|425433318|ref|ZP_18813855.1| RNA polymerase sigma factor RpoD [Helicobacter pylori GAM100Ai]
gi|410714103|gb|EKQ71585.1| RNA polymerase sigma factor RpoD [Helicobacter pylori GAM100Ai]
Length = 681
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 499
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 500 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 559
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 560 KVKNVIKVTKEPISLETPVGNDDDGKF 586
>gi|420488294|ref|ZP_14986894.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp P-11]
gi|420522222|ref|ZP_15020648.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-11b]
gi|393108865|gb|EJC09397.1| RNA polymerase sigma factor rpoD [Helicobacter pylori Hp P-11]
gi|393130452|gb|EJC30881.1| RNA polymerase sigma factor RpoD [Helicobacter pylori Hp P-11b]
Length = 673
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 432 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 491
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 492 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 551
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 552 KVKNVIKVTKEPISLETPVGNDDDGKF 578
>gi|297588502|ref|ZP_06947145.1| DNA-directed RNA polymerase sigma subunit RpoD [Finegoldia magna
ATCC 53516]
gi|297573875|gb|EFH92596.1| DNA-directed RNA polymerase sigma subunit RpoD [Finegoldia magna
ATCC 53516]
Length = 389
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 107/154 (69%), Gaps = 1/154 (0%)
Query: 319 LKSELHSGNS-SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
L E+ +G+ +++KL ANLRLVV +AK+Y GRG+S DL+QEG++GLMK+V+KF
Sbjct: 141 LAQEMENGSKRAKKKLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNLGLMKAVDKFDYTR 200
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDL 437
G +F++YA WW+RQ I +AI +RTIR+P ++ +++++ +R +Q+ P E++
Sbjct: 201 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRLVRIERQLLQDLGRDPTNEEI 260
Query: 438 ARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
A+ +GI VEK+ + I + P+S++ P+ ++D+
Sbjct: 261 AKEMGIEVEKVREVRKIAQEPVSLETPIGEEEDS 294
>gi|159899067|ref|YP_001545314.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159892106|gb|ABX05186.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 386
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 121/213 (56%), Gaps = 14/213 (6%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA EE +L K++ TL++ +
Sbjct: 86 DDPVRMYLQEIGQVPLLTAAEEVDL-------------AKKMEVAHAANDTLLQDDGMLE 132
Query: 314 LSCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
S R LK + +G ++R+ LI ANLRLVV +AK+Y G+++ DL+QEG++GLM++VEK
Sbjct: 133 HSDRISLKRHIDTGRAARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEK 192
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSP 432
F G +F++YA WW+RQ I +AI SRTIRLP ++ +S+V Q P
Sbjct: 193 FDYTKGHKFSTYATWWIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHKLQQTMQREP 252
Query: 433 DKEDLARRVGITVEKLERLIFITRMPLSMQQPV 465
E++A +GIT K+ R + + PLS++ PV
Sbjct: 253 TPEEIAEAMGITASKVRRTLEASMHPLSLEMPV 285
>gi|148654464|ref|YP_001274669.1| RpoD family RNA polymerase sigma factor [Roseiflexus sp. RS-1]
gi|148566574|gb|ABQ88719.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus sp.
RS-1]
Length = 541
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 104/157 (66%)
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQ 376
RD + G ++RE L ANLRLVV VAK+Y GRG+ L DL+QEG++GL+++VEKF +
Sbjct: 292 RDWNLAIDQGKTAREDLTQANLRLVVSVAKKYIGRGLQLLDLIQEGNVGLIRAVEKFDYR 351
Query: 377 AGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKED 436
G +F++YA WW+RQ I +AI +RTIR+P ++ +++++ R +QE P E+
Sbjct: 352 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRLMRESRRMLQELGREPTDEE 411
Query: 437 LARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
L+R +GI V+K+ + + P+S++ PV ++D+
Sbjct: 412 LSRALGIPVDKVRSIRKTSLEPVSLETPVGQEEDSQL 448
>gi|420414588|ref|ZP_14913706.1| RNA polymerase sigma factor [Helicobacter pylori NQ4053]
gi|393034830|gb|EJB35883.1| RNA polymerase sigma factor [Helicobacter pylori NQ4053]
Length = 672
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 431 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 490
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 491 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 550
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 551 KVKNVIKVTKEPISLETPVGNDDDGKF 577
>gi|419840884|ref|ZP_14364270.1| RNA polymerase sigma factor RpoD [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|386906972|gb|EIJ71692.1| RNA polymerase sigma factor RpoD [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
Length = 436
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 103/152 (67%)
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
K L + ++LI ANLRLVV +AK++ RG+ L DL+QEG++GLMK+VEKF+ G
Sbjct: 189 KKALEGDEFANKRLIEANLRLVVSIAKKHTNRGLKLLDLIQEGNIGLMKAVEKFEYTKGY 248
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLAR 439
+F++YA WW+RQ I +AI RTIR+P ++ ++K+ + R+Y+QE E LA
Sbjct: 249 KFSTYATWWIRQAITRAIADQGRTIRIPVHMIETINKIKKEARIYLQETGKDATPEILAE 308
Query: 440 RVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
R+G+ VEK++ + + + P+S++ PV +++D+
Sbjct: 309 RLGMEVEKVKSIQEMNQDPISLETPVGSEEDS 340
>gi|212702263|ref|ZP_03310391.1| hypothetical protein DESPIG_00274 [Desulfovibrio piger ATCC 29098]
gi|212674326|gb|EEB34809.1| RNA polymerase sigma factor RpoD [Desulfovibrio piger ATCC 29098]
Length = 589
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 107/155 (69%), Gaps = 4/155 (2%)
Query: 323 LHSGNSS----REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 378
+ GN++ +++LI +NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G
Sbjct: 341 IKRGNTAAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRG 400
Query: 379 CRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLA 438
+F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A
Sbjct: 401 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIA 460
Query: 439 RRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
R+ VEK+++++ I + P+S++ P+ ++D++
Sbjct: 461 ERMEYPVEKVKKVLKIAKEPISLETPIGDEEDSSL 495
>gi|89900350|ref|YP_522821.1| sigma 70 (RpoD) [Rhodoferax ferrireducens T118]
gi|89345087|gb|ABD69290.1| sigma 70 (RpoD) [Rhodoferax ferrireducens T118]
Length = 783
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 105/158 (66%)
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
+S ++++++I ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++
Sbjct: 539 YSSRAAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 598
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGI 443
YA WW+RQ I ++I +RTIR+P ++ ++K+ R ++QE PD LA R+ I
Sbjct: 599 YATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDASVLAERMEI 658
Query: 444 TVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDAA 481
+K+ +++ I + P+SM+ P+ D D+ DAA
Sbjct: 659 PEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDAA 696
>gi|398336925|ref|ZP_10521630.1| RNA polymerase sigma-70 factor [Leptospira kmetyi serovar Malaysia
str. Bejo-Iso9]
Length = 585
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 130/211 (61%), Gaps = 17/211 (8%)
Query: 265 ETRKLLTADEEFELIAQIQD----LIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
E + + DE E+I I++ L R+E+E + +W + I R++
Sbjct: 292 EVKMGVNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIK------DWGEKIIKGEREI- 344
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
+ ++++L+ ANLRLVV +AK+Y RG+ DL+QEG++GL+K+V+KF+ + G +
Sbjct: 345 ------SQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYK 398
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARR 440
F++YA WW+RQ I +AI +RTIR+P ++ ++KV+ RL++QE P E++A R
Sbjct: 399 FSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFVQEFGRDPSNEEIAER 458
Query: 441 VGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+G V+K++ + + R P+S++ PV +++D+
Sbjct: 459 LGWPVQKVKMVKNVAREPISLEIPVGSEEDS 489
>gi|420419168|ref|ZP_14918258.1| RNA polymerase sigma factor [Helicobacter pylori NQ4076]
gi|393031074|gb|EJB32146.1| RNA polymerase sigma factor [Helicobacter pylori NQ4076]
Length = 682
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 103/147 (70%)
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ ++ K+ +NLRLVV +AK++ RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 441 DRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYAT 500
Query: 387 WWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVE 446
WW++Q I +AI +RTIR+P ++ ++++ + R +IQE PD E +A VG++++
Sbjct: 501 WWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLD 560
Query: 447 KLERLIFITRMPLSMQQPVWADQDTTF 473
K++ +I +T+ P+S++ PV D D F
Sbjct: 561 KVKNVIKVTKEPISLETPVGNDDDGKF 587
>gi|359771709|ref|ZP_09275155.1| RNA polymerase sigma factor SigB [Gordonia effusa NBRC 100432]
gi|359311145|dbj|GAB17933.1| RNA polymerase sigma factor SigB [Gordonia effusa NBRC 100432]
Length = 329
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 126/227 (55%), Gaps = 15/227 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL QI+ + + L + +
Sbjct: 31 DLVRVYLNGIGRTALLNAEQEVELAKQIE-------------TGLYAKHVLATRKRLSAV 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDL + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 78 KKRDLAQIIREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKR-LYIQEGNHSPD 433
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR L+ Q G + D
Sbjct: 138 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATD 197
Query: 434 KEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQSTFLDA 480
E LA GI EK+ L+ +R P+S+ PV D++ DA
Sbjct: 198 DE-LAAESGIPAEKIADLLDHSRDPVSLDMPVGTDEEAPLGDFIEDA 243
>gi|19553123|ref|NP_601125.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum ATCC
13032]
gi|62390759|ref|YP_226161.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum ATCC
13032]
gi|1149591|emb|CAA89988.1| SigB sigma factor [Corynebacterium glutamicum]
gi|21324689|dbj|BAB99312.1| DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) (SigB)
[Corynebacterium glutamicum ATCC 13032]
gi|41326097|emb|CAF20260.1| RNA POLYMERASE SIGMA FACTOR [Corynebacterium glutamicum ATCC 13032]
gi|385144025|emb|CCH25064.1| RNA polymerase sigma factor [Corynebacterium glutamicum K051]
Length = 331
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 125/216 (57%), Gaps = 12/216 (5%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL I+ + L E S+ EP +A+
Sbjct: 32 DLVRVYLNGIGKTALLTAEDEVELAQTIE--VGLYAEHLLKNSE---EP----LTRAM-- 80
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 81 -KRDLKVLAKDGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 139
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q
Sbjct: 140 YSKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKRELYQHLGREATN 199
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
E+LA GI K+E L+ +R P+S+ PV AD++
Sbjct: 200 EELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEE 235
>gi|294782673|ref|ZP_06747999.1| RNA polymerase sigma factor RpoD [Fusobacterium sp. 1_1_41FAA]
gi|294481314|gb|EFG29089.1| RNA polymerase sigma factor RpoD [Fusobacterium sp. 1_1_41FAA]
Length = 500
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 100/141 (70%)
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
+KLI +NLRLVV +AK++ RG+ L DL+QEG++GLMK+VEKF+ G +F++YA WW+R
Sbjct: 264 QKLIESNLRLVVSIAKKHTNRGLKLLDLIQEGNIGLMKAVEKFEYTKGYKFSTYATWWIR 323
Query: 391 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450
Q I +AI RTIR+P ++ ++K+ + R+Y+QE E LA R+G+ VEK++
Sbjct: 324 QAITRAIADQGRTIRIPVHMIETINKIKKESRIYLQETGKDASPEILAERLGMEVEKIKA 383
Query: 451 LIFITRMPLSMQQPVWADQDT 471
+ + + P+S++ PV +++D+
Sbjct: 384 IQEMNQEPISLETPVGSEEDS 404
>gi|409351169|ref|ZP_11233997.1| RNA polymerase sigma factor [Lactobacillus equicursoris CIP 110162]
gi|407876928|emb|CCK86055.1| RNA polymerase sigma factor [Lactobacillus equicursoris CIP 110162]
Length = 373
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 126/232 (54%), Gaps = 40/232 (17%)
Query: 240 KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 299
KA ++ + G NDP+R +L LLT +EE EL +I+
Sbjct: 87 KAELENLAAPGSRMNDPVRQYLKRIGRVNLLTGNEEVELAKRIE---------------- 130
Query: 300 GREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
++E+L NANLRLVV +AK+Y GRG+S DL+
Sbjct: 131 ------------------------AGDEEAKEELTNANLRLVVSIAKRYVGRGMSFLDLI 166
Query: 360 QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLE 419
QEG+MGLMK+V+KF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++
Sbjct: 167 QEGNMGLMKAVDKFDYRLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIR 226
Query: 420 AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
+R +Q+ P+ E++A + + V+K+ ++ + + P+S++ P+ + D+
Sbjct: 227 IQRQLLQDLGRDPEPEEIAAEMDLPVKKVREILKVAQEPVSLETPIGEEDDS 278
>gi|145295824|ref|YP_001138645.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum R]
gi|417971573|ref|ZP_12612496.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum S9114]
gi|418244265|ref|ZP_12870688.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum ATCC
14067]
gi|12958494|gb|AAK09322.1|AF320818_1 sigma factor SigB [[Brevibacterium] flavum]
gi|140845744|dbj|BAF54743.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344044055|gb|EGV39736.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum S9114]
gi|354511671|gb|EHE84577.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum ATCC
14067]
Length = 331
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 125/216 (57%), Gaps = 12/216 (5%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL I+ + L E S+ EP +A+
Sbjct: 32 DLVRVYLNGIGKTALLTAEDEVELAQTIE--VGLYAEHLLKNSE---EP----LTRAM-- 80
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 81 -KRDLKVLAKDGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 139
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDK 434
G +F++YA WW+RQ I + + SRTIRLP ++ ++K+ KR Q
Sbjct: 140 YSKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATN 199
Query: 435 EDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470
E+LA GI K+E L+ +R P+S+ PV AD++
Sbjct: 200 EELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEE 235
>gi|421074930|ref|ZP_15535949.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans JBW45]
gi|392526990|gb|EIW50097.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans JBW45]
Length = 377
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 123/225 (54%), Gaps = 40/225 (17%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
+ EG +DP+R++L LLTADEE +L ++++
Sbjct: 98 IPEGISIDDPVRMYLKEIGRVPLLTADEEIKLAQRMEE---------------------- 135
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
++ +L ANLRLVV +AK+Y GRG+ DL+QEG++GL
Sbjct: 136 ------------------GDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 177
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426
+K+VEKF G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +Q
Sbjct: 178 IKAVEKFDYNKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQ 237
Query: 427 EGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
E P E++A+ + I+VE++ ++ I + P+S++ P+ ++D+
Sbjct: 238 ELGREPQPEEIAKEMDISVERVREIMKIAQEPVSLETPIGEEEDS 282
>gi|303245332|ref|ZP_07331616.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfovibrio
fructosovorans JJ]
gi|302493181|gb|EFL53043.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfovibrio
fructosovorans JJ]
Length = 588
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 107/155 (69%), Gaps = 4/155 (2%)
Query: 323 LHSGNSS----REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 378
+ GN++ +++LI ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G
Sbjct: 340 IKRGNTAAQRAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRG 399
Query: 379 CRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLA 438
+F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A
Sbjct: 400 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIA 459
Query: 439 RRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
R+ +EK+++++ I + P+S++ P+ ++D++
Sbjct: 460 ERMDYPLEKVKKVLKIAKEPISLETPIGDEEDSSL 494
>gi|421500309|ref|ZP_15947320.1| RNA polymerase sigma factor RpoD [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|402268723|gb|EJU18089.1| RNA polymerase sigma factor RpoD [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 436
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 103/152 (67%)
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
K L + ++LI ANLRLVV +AK++ RG+ L DL+QEG++GLMK+VEKF+ G
Sbjct: 189 KKALEGDEFANKRLIEANLRLVVSIAKKHTNRGLKLLDLIQEGNIGLMKAVEKFEYTKGY 248
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLAR 439
+F++YA WW+RQ I +AI RTIR+P ++ ++K+ + R+Y+QE E LA
Sbjct: 249 KFSTYATWWIRQAITRAIADQGRTIRIPVHMIETINKIKKEARIYLQETGKDATPEILAE 308
Query: 440 RVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
R+G+ VEK++ + + + P+S++ PV +++D+
Sbjct: 309 RLGMEVEKVKSIQEMNQDPISLETPVGSEEDS 340
>gi|376260881|ref|YP_005147601.1| sigma-70 family RNA polymerase sigma factor [Clostridium sp.
BNL1100]
gi|373944875|gb|AEY65796.1| RNA polymerase sigma factor, sigma-70 family [Clostridium sp.
BNL1100]
Length = 359
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 126/226 (55%), Gaps = 42/226 (18%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
+ EG +DP+R++L LL+ADEE
Sbjct: 80 IPEGISIDDPVRMYLKEIGKVPLLSADEEI------------------------------ 109
Query: 307 EWAKAIGLSCRDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365
DL + +G+ ++ +L ANLRLVV +AK+Y GRG+ DL+QEG++G
Sbjct: 110 -----------DLAHRMENGDIEAKRRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLG 158
Query: 366 LMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYI 425
L+K+VEKF + G +F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +
Sbjct: 159 LIKAVEKFDYRRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLL 218
Query: 426 QEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
QE P +++A+ +G++V+K+ ++ I++ P+S++ P+ ++D+
Sbjct: 219 QELGREPQPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDS 264
>gi|340755401|ref|ZP_08692091.1| RNA polymerase sigma factor rpoD [Fusobacterium sp. D12]
gi|340573510|gb|EFS24063.2| RNA polymerase sigma factor rpoD [Fusobacterium sp. D12]
Length = 436
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 103/152 (67%)
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
K L + ++LI ANLRLVV +AK++ RG+ L DL+QEG++GLMK+VEKF+ G
Sbjct: 189 KKALEGDEFANKRLIEANLRLVVSIAKKHTNRGLKLLDLIQEGNIGLMKAVEKFEYTKGY 248
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLAR 439
+F++YA WW+RQ I +AI RTIR+P ++ ++K+ + R+Y+QE E LA
Sbjct: 249 KFSTYATWWIRQAITRAIADQGRTIRIPVHMIETINKIKKEARIYLQETGKDATPEILAE 308
Query: 440 RVGITVEKLERLIFITRMPLSMQQPVWADQDT 471
R+G+ VEK++ + + + P+S++ PV +++D+
Sbjct: 309 RLGMEVEKVKSIQEMNQDPISLETPVGSEEDS 340
>gi|256830224|ref|YP_003158952.1| RpoD subfamily RNA polymerase sigma-70 subunit [Desulfomicrobium
baculatum DSM 4028]
gi|256579400|gb|ACU90536.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfomicrobium
baculatum DSM 4028]
Length = 588
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 107/155 (69%), Gaps = 4/155 (2%)
Query: 323 LHSGNS----SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 378
+ GN+ ++++LI ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G
Sbjct: 340 IRKGNTDALDAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRG 399
Query: 379 CRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLA 438
+F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A
Sbjct: 400 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLVRTSRYLVQELGRDPSPEEIA 459
Query: 439 RRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
R+ +EK+++++ I + P+S++ P+ ++D++
Sbjct: 460 ERMDYPLEKVKKVLKIAKEPISLETPIGDEEDSSL 494
>gi|126667564|ref|ZP_01738534.1| nonessential primary sigma factor [Marinobacter sp. ELB17]
gi|126627990|gb|EAZ98617.1| nonessential primary sigma factor [Marinobacter sp. ELB17]
Length = 333
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 101/152 (66%)
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
S R+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF++YA W
Sbjct: 93 SGRKRMIESNLRLVVKIARRYVNRGLTLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 152
Query: 388 WVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEK 447
W+RQTI + I +RTIRLP ++ L+ L A R Q+ +H P E++AR+V V+
Sbjct: 153 WIRQTIERGIMNQTRTIRLPIHVVKELNLYLRAARELTQQLDHEPTAEEIARKVDKPVKD 212
Query: 448 LERLIFITRMPLSMQQPVWADQDTTFQSTFLD 479
++R++ + SM P+ A + + T D
Sbjct: 213 VKRMLGLNERVASMDTPIGAGGEKSLLDTVAD 244
>gi|357633048|ref|ZP_09130926.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfovibrio sp.
FW1012B]
gi|357581602|gb|EHJ46935.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfovibrio sp.
FW1012B]
Length = 588
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 107/155 (69%), Gaps = 4/155 (2%)
Query: 323 LHSGNSS----REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 378
+ GN++ +++LI ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ Q G
Sbjct: 340 IKRGNTAAQRAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRG 399
Query: 379 CRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLA 438
+F++YA WW+RQ I +AI +RTIR+P ++ ++K++ R +QE P E++A
Sbjct: 400 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIA 459
Query: 439 RRVGITVEKLERLIFITRMPLSMQQPVWADQDTTF 473
R+ +EK+++++ I + P+S++ P+ ++D++
Sbjct: 460 ERMDYPLEKVKKVLKIAKEPISLETPIGDEEDSSL 494
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.128 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,886,018,289
Number of Sequences: 23463169
Number of extensions: 270408697
Number of successful extensions: 1025300
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10757
Number of HSP's successfully gapped in prelim test: 974
Number of HSP's that attempted gapping in prelim test: 1006067
Number of HSP's gapped (non-prelim): 17468
length of query: 482
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 336
effective length of database: 8,933,572,693
effective search space: 3001680424848
effective search space used: 3001680424848
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 79 (35.0 bits)