Query 011577
Match_columns 482
No_of_seqs 346 out of 2022
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 11:02:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9z_H Sigma factor SIGA; heli 100.0 8E-38 2.7E-42 329.1 25.3 229 252-480 91-351 (438)
2 3ugo_A RNA polymerase sigma fa 100.0 1E-38 3.5E-43 312.6 16.3 209 253-461 5-245 (245)
3 2a6h_F RNA polymerase sigma fa 100.0 4.4E-38 1.5E-42 329.8 19.6 225 253-480 77-336 (423)
4 3iyd_F RNA polymerase sigma fa 99.9 3.2E-27 1.1E-31 257.7 1.9 167 315-481 357-527 (613)
5 1l0o_C Sigma factor; bergerat 99.8 1.5E-20 5.1E-25 176.3 6.8 153 314-467 13-166 (243)
6 1rp3_A RNA polymerase sigma fa 99.8 9.5E-18 3.3E-22 157.4 16.3 136 327-465 11-151 (239)
7 1or7_A Sigma-24, RNA polymeras 99.7 2.7E-17 9.1E-22 150.5 11.7 141 315-458 9-183 (194)
8 1sig_A Sigma70, RNA polymerase 99.7 3.6E-17 1.2E-21 165.8 12.2 86 317-402 250-339 (339)
9 2q1z_A RPOE, ECF SIGE; ECF sig 99.7 3.2E-18 1.1E-22 155.7 1.3 144 313-457 10-177 (184)
10 3mzy_A RNA polymerase sigma-H 99.5 2.5E-14 8.5E-19 126.3 7.9 105 352-457 1-150 (164)
11 2lfw_A PHYR sigma-like domain; 99.4 9.6E-15 3.3E-19 131.8 -3.3 127 330-458 3-136 (157)
12 3n0r_A Response regulator; sig 99.4 4.7E-13 1.6E-17 132.4 6.6 131 325-457 17-153 (286)
13 2o7g_A Probable RNA polymerase 99.3 7.5E-12 2.6E-16 106.2 7.6 84 318-404 13-97 (112)
14 1h3l_A RNA polymerase sigma fa 99.2 1.9E-11 6.4E-16 99.2 5.4 76 324-401 7-83 (87)
15 3clo_A Transcriptional regulat 97.9 1.5E-09 5.1E-14 105.5 -20.8 142 316-459 84-240 (258)
16 3iyd_F RNA polymerase sigma fa 94.7 0.0093 3.2E-07 65.0 1.9 34 253-286 94-127 (613)
17 3hug_A RNA polymerase sigma fa 94.1 0.026 8.9E-07 45.9 2.9 31 428-458 50-80 (92)
18 1rp3_A RNA polymerase sigma fa 93.6 0.82 2.8E-05 41.8 12.5 29 429-457 201-229 (239)
19 1x3u_A Transcriptional regulat 92.8 0.11 3.8E-06 40.3 4.4 50 410-459 10-59 (79)
20 2p7v_B Sigma-70, RNA polymeras 92.4 0.13 4.5E-06 39.3 4.3 30 430-459 24-53 (68)
21 1l9z_H Sigma factor SIGA; heli 91.9 1.3 4.6E-05 46.4 12.6 29 430-458 394-422 (438)
22 1l0o_C Sigma factor; bergerat 91.4 0.11 3.8E-06 47.6 3.4 32 428-459 211-242 (243)
23 3t72_q RNA polymerase sigma fa 90.9 0.15 5.1E-06 42.9 3.3 29 430-458 38-66 (99)
24 1ku3_A Sigma factor SIGA; heli 90.7 0.4 1.4E-05 37.0 5.4 29 430-458 29-57 (73)
25 1je8_A Nitrate/nitrite respons 90.5 0.058 2E-06 43.2 0.5 31 429-459 34-64 (82)
26 1tty_A Sigma-A, RNA polymerase 90.5 0.38 1.3E-05 38.6 5.4 29 430-458 37-65 (87)
27 2o8x_A Probable RNA polymerase 89.9 0.51 1.7E-05 35.4 5.3 30 429-458 29-58 (70)
28 3c57_A Two component transcrip 89.2 0.2 6.9E-06 41.1 2.7 30 430-459 41-70 (95)
29 1xsv_A Hypothetical UPF0122 pr 87.7 0.44 1.5E-05 40.6 4.0 29 429-457 39-67 (113)
30 1tc3_C Protein (TC3 transposas 87.2 0.85 2.9E-05 31.1 4.6 26 431-456 21-46 (51)
31 2jpc_A SSRB; DNA binding prote 86.7 0.5 1.7E-05 34.8 3.3 31 430-460 12-42 (61)
32 2rnj_A Response regulator prot 86.1 0.075 2.5E-06 43.1 -1.7 30 430-459 43-72 (91)
33 3ulq_B Transcriptional regulat 85.5 0.56 1.9E-05 38.4 3.3 32 430-461 43-74 (90)
34 1fse_A GERE; helix-turn-helix 84.9 1.4 4.7E-05 33.3 5.2 31 429-459 24-54 (74)
35 2jt1_A PEFI protein; solution 84.4 1.7 5.9E-05 34.9 5.6 27 429-455 22-48 (77)
36 2x48_A CAG38821; archeal virus 84.0 1.1 3.7E-05 32.4 4.0 24 431-454 31-54 (55)
37 1s7o_A Hypothetical UPF0122 pr 82.5 1.2 3.9E-05 38.1 4.1 28 430-457 37-64 (113)
38 1p4w_A RCSB; solution structur 82.2 0.6 2E-05 39.0 2.2 31 431-461 49-79 (99)
39 1l3l_A Transcriptional activat 75.2 2 6.7E-05 40.3 3.6 32 430-461 187-218 (234)
40 2q0o_A Probable transcriptiona 72.2 2 6.9E-05 40.2 2.9 31 430-460 189-219 (236)
41 2heo_A Z-DNA binding protein 1 71.5 5.3 0.00018 30.6 4.7 28 428-455 22-49 (67)
42 3k2z_A LEXA repressor; winged 70.9 7.4 0.00025 35.5 6.4 39 416-454 9-47 (196)
43 3szt_A QCSR, quorum-sensing co 70.6 2.5 8.7E-05 39.8 3.2 32 430-461 189-220 (237)
44 3kz3_A Repressor protein CI; f 70.0 10 0.00035 29.1 6.1 35 417-453 13-47 (80)
45 1xn7_A Hypothetical protein YH 69.8 7.3 0.00025 31.2 5.3 30 424-454 10-39 (78)
46 1qbj_A Protein (double-strande 68.6 9.2 0.00032 30.7 5.7 27 429-455 25-51 (81)
47 2k02_A Ferrous iron transport 65.4 8.2 0.00028 31.7 4.9 30 424-454 10-39 (87)
48 2htj_A P fimbrial regulatory p 65.2 9.2 0.00031 29.8 5.0 25 431-455 14-38 (81)
49 3mn2_A Probable ARAC family tr 65.2 13 0.00046 30.1 6.3 39 417-455 4-42 (108)
50 3qp6_A CVIR transcriptional re 64.1 3.5 0.00012 39.7 2.8 31 431-461 212-242 (265)
51 1qgp_A Protein (double strande 63.9 11 0.00038 29.8 5.2 26 430-455 30-55 (77)
52 3oop_A LIN2960 protein; protei 63.8 36 0.0012 28.3 8.9 65 382-455 11-75 (143)
53 1oyi_A Double-stranded RNA-bin 63.7 7.4 0.00025 31.7 4.2 24 432-455 31-54 (82)
54 1jgs_A Multiple antibiotic res 63.1 31 0.0011 28.4 8.3 66 381-455 7-72 (138)
55 3bpv_A Transcriptional regulat 62.9 39 0.0013 27.7 8.9 63 384-455 5-67 (138)
56 1lmb_3 Protein (lambda repress 62.7 17 0.00058 28.3 6.2 39 413-453 14-52 (92)
57 2k9s_A Arabinose operon regula 61.4 15 0.00052 29.7 5.9 38 417-454 5-43 (107)
58 1y7y_A C.AHDI; helix-turn-heli 61.0 18 0.00063 26.5 5.9 23 431-453 26-48 (74)
59 1zx4_A P1 PARB, plasmid partit 60.9 8.7 0.0003 36.0 4.8 29 431-459 24-52 (192)
60 3oio_A Transcriptional regulat 60.0 13 0.00045 30.4 5.3 39 417-455 9-47 (113)
61 3oou_A LIN2118 protein; protei 59.7 17 0.00057 29.5 5.9 38 418-455 8-45 (108)
62 3bro_A Transcriptional regulat 59.5 40 0.0014 27.7 8.4 66 383-455 9-74 (141)
63 2pex_A Transcriptional regulat 58.4 48 0.0016 27.8 8.8 65 382-455 21-85 (153)
64 1jhg_A Trp operon repressor; c 57.8 11 0.00037 31.9 4.4 21 431-451 58-78 (101)
65 2a6h_F RNA polymerase sigma fa 57.7 3.6 0.00012 42.7 1.7 29 430-458 379-407 (423)
66 3lsg_A Two-component response 57.3 23 0.00077 28.4 6.2 32 424-455 11-43 (103)
67 2rdp_A Putative transcriptiona 57.3 47 0.0016 27.6 8.6 25 431-455 56-80 (150)
68 1r69_A Repressor protein CI; g 57.2 17 0.00057 26.4 4.9 24 431-454 14-37 (69)
69 2b5a_A C.BCLI; helix-turn-heli 57.2 23 0.00078 26.3 5.9 23 431-453 23-45 (77)
70 3klo_A Transcriptional regulat 57.2 17 0.00059 32.7 6.1 36 428-463 171-206 (225)
71 3f6w_A XRE-family like protein 56.8 23 0.00077 26.9 5.9 23 431-453 27-49 (83)
72 1jko_C HIN recombinase, DNA-in 56.2 5.8 0.0002 27.2 2.1 24 431-454 21-44 (52)
73 1uxc_A FRUR (1-57), fructose r 56.2 9.2 0.00032 29.3 3.4 24 432-455 1-24 (65)
74 3s8q_A R-M controller protein; 56.2 23 0.0008 26.9 5.9 31 431-462 24-54 (82)
75 2w7n_A TRFB transcriptional re 56.2 13 0.00044 31.4 4.6 29 430-458 33-61 (101)
76 3eco_A MEPR; mutlidrug efflux 56.1 41 0.0014 27.7 7.9 66 383-455 6-71 (139)
77 3i4p_A Transcriptional regulat 55.3 16 0.00053 32.3 5.3 31 424-455 11-41 (162)
78 2ewt_A BLDD, putative DNA-bind 55.3 31 0.0011 25.1 6.3 24 431-454 21-46 (71)
79 2fa5_A Transcriptional regulat 55.0 34 0.0012 29.0 7.3 25 431-455 63-87 (162)
80 1zug_A Phage 434 CRO protein; 54.8 19 0.00065 26.2 4.9 24 431-454 16-39 (71)
81 2wiu_B HTH-type transcriptiona 54.5 27 0.00093 26.6 6.0 23 431-453 25-47 (88)
82 2ef8_A C.ECOT38IS, putative tr 54.0 27 0.00092 26.4 5.9 23 431-453 23-45 (84)
83 2e1c_A Putative HTH-type trans 53.9 11 0.00038 33.9 4.1 32 423-455 34-65 (171)
84 2nnn_A Probable transcriptiona 53.4 62 0.0021 26.4 8.5 65 381-455 12-76 (140)
85 2cfx_A HTH-type transcriptiona 52.9 24 0.00081 30.3 6.0 29 426-455 15-43 (144)
86 3g5g_A Regulatory protein; tra 52.8 26 0.00088 28.4 5.9 43 417-462 29-71 (99)
87 2dbb_A Putative HTH-type trans 52.7 23 0.00078 30.5 5.8 30 425-455 18-47 (151)
88 3fm5_A Transcriptional regulat 52.5 48 0.0016 27.8 7.8 66 382-455 13-78 (150)
89 3nrv_A Putative transcriptiona 52.3 34 0.0012 28.5 6.8 66 381-455 12-78 (148)
90 2r1j_L Repressor protein C2; p 52.1 20 0.00069 25.7 4.7 23 431-453 18-40 (68)
91 1xmk_A Double-stranded RNA-spe 52.1 19 0.00065 28.9 4.8 34 420-454 15-49 (79)
92 3b7h_A Prophage LP1 protein 11 51.7 29 0.001 25.7 5.7 32 431-462 20-51 (78)
93 2k9q_A Uncharacterized protein 51.6 20 0.00067 27.1 4.7 23 431-453 15-37 (77)
94 2a6c_A Helix-turn-helix motif; 51.0 29 0.00098 26.8 5.7 23 431-453 31-53 (83)
95 3deu_A Transcriptional regulat 50.7 70 0.0024 27.7 8.8 66 382-455 27-92 (166)
96 2cg4_A Regulatory protein ASNC 50.3 27 0.00092 30.1 5.9 29 426-455 18-46 (152)
97 1adr_A P22 C2 repressor; trans 49.5 23 0.00078 26.1 4.7 23 431-453 18-40 (76)
98 2wus_R RODZ, putative uncharac 49.4 22 0.00076 29.8 5.1 23 431-453 20-42 (112)
99 2w25_A Probable transcriptiona 49.1 15 0.00052 31.6 4.1 29 426-455 17-45 (150)
100 2fbh_A Transcriptional regulat 48.9 82 0.0028 25.8 8.6 25 431-455 52-76 (146)
101 2o38_A Hypothetical protein; a 48.4 34 0.0012 28.9 6.1 44 417-462 41-84 (120)
102 4ghj_A Probable transcriptiona 48.2 37 0.0013 28.1 6.2 36 416-453 36-71 (101)
103 3oio_A Transcriptional regulat 48.2 46 0.0016 27.0 6.8 55 343-397 14-68 (113)
104 2p5v_A Transcriptional regulat 48.1 30 0.001 30.2 5.9 29 426-455 20-48 (162)
105 2cyy_A Putative HTH-type trans 48.1 31 0.001 29.8 5.9 29 426-455 17-45 (151)
106 2dt5_A AT-rich DNA-binding pro 47.8 33 0.0011 32.1 6.5 51 405-455 2-52 (211)
107 1lj9_A Transcriptional regulat 47.7 77 0.0026 26.1 8.3 63 384-455 5-67 (144)
108 2kpj_A SOS-response transcript 47.7 28 0.00096 27.4 5.2 23 431-453 22-44 (94)
109 3mkl_A HTH-type transcriptiona 47.5 24 0.00083 29.2 5.0 35 421-455 13-47 (120)
110 2fmy_A COOA, carbon monoxide o 47.0 73 0.0025 28.2 8.5 31 431-461 167-199 (220)
111 2ia0_A Putative HTH-type trans 46.9 31 0.0011 30.8 5.9 29 426-455 27-55 (171)
112 1jhf_A LEXA repressor; LEXA SO 46.6 34 0.0011 30.9 6.2 34 420-453 14-48 (202)
113 3oou_A LIN2118 protein; protei 46.5 45 0.0015 26.9 6.4 42 349-390 18-59 (108)
114 3eus_A DNA-binding protein; st 46.4 41 0.0014 26.1 6.0 31 431-462 27-57 (86)
115 2a61_A Transcriptional regulat 46.2 48 0.0016 27.3 6.7 25 431-455 47-71 (145)
116 2p5k_A Arginine repressor; DNA 46.1 41 0.0014 24.3 5.5 26 430-455 18-48 (64)
117 4ham_A LMO2241 protein; struct 45.7 33 0.0011 29.3 5.6 26 430-455 37-62 (134)
118 3tqn_A Transcriptional regulat 45.6 48 0.0016 27.4 6.6 25 431-455 33-57 (113)
119 1on2_A Transcriptional regulat 45.3 42 0.0014 28.2 6.3 30 424-454 16-45 (142)
120 2xi8_A Putative transcription 45.3 26 0.00088 25.0 4.3 23 431-453 14-36 (66)
121 3mn2_A Probable ARAC family tr 45.2 53 0.0018 26.4 6.6 48 350-397 16-63 (108)
122 3cjn_A Transcriptional regulat 45.1 47 0.0016 28.2 6.6 25 431-455 66-90 (162)
123 3k0l_A Repressor protein; heli 44.8 52 0.0018 28.1 6.9 66 381-455 19-84 (162)
124 3e6m_A MARR family transcripti 44.6 44 0.0015 28.6 6.4 25 431-455 67-91 (161)
125 3hsr_A HTH-type transcriptiona 44.3 46 0.0016 27.7 6.3 64 383-455 11-74 (140)
126 3kor_A Possible Trp repressor; 44.3 28 0.00097 30.3 4.9 23 431-453 75-97 (119)
127 1x57_A Endothelial differentia 44.1 39 0.0013 26.2 5.5 23 431-453 26-48 (91)
128 2vt3_A REX, redox-sensing tran 43.8 36 0.0012 32.0 6.1 51 405-455 7-57 (215)
129 3bja_A Transcriptional regulat 43.6 45 0.0015 27.2 6.1 25 431-455 47-71 (139)
130 1bl0_A Protein (multiple antib 43.5 25 0.00086 29.5 4.5 39 417-455 13-51 (129)
131 1yio_A Response regulatory pro 43.2 20 0.00068 31.6 4.0 31 430-460 156-186 (208)
132 2pn6_A ST1022, 150AA long hypo 43.1 21 0.00072 30.6 4.1 25 431-455 17-41 (150)
133 4hbl_A Transcriptional regulat 43.1 63 0.0021 27.2 7.1 25 431-455 55-79 (149)
134 1a04_A Nitrate/nitrite respons 43.0 14 0.00047 32.9 2.9 31 431-461 169-199 (215)
135 3qq6_A HTH-type transcriptiona 42.9 31 0.0011 26.4 4.6 32 431-462 23-54 (78)
136 1j5y_A Transcriptional regulat 42.3 48 0.0017 29.8 6.5 27 428-454 33-59 (187)
137 3mkl_A HTH-type transcriptiona 42.3 44 0.0015 27.5 5.8 54 343-397 14-67 (120)
138 1y6u_A XIS, excisionase from t 42.2 18 0.00062 28.3 3.1 25 431-455 16-40 (70)
139 3vk0_A NHTF, transcriptional r 42.1 46 0.0016 27.2 5.9 23 431-453 34-56 (114)
140 2vn2_A DNAD, chromosome replic 42.1 53 0.0018 27.9 6.4 34 430-463 50-85 (128)
141 2l0k_A Stage III sporulation p 41.7 34 0.0012 28.2 4.9 23 432-454 21-43 (93)
142 1i1g_A Transcriptional regulat 41.6 43 0.0015 28.1 5.7 27 427-454 15-41 (141)
143 2gxg_A 146AA long hypothetical 41.5 92 0.0031 25.6 7.8 25 431-455 50-74 (146)
144 3neu_A LIN1836 protein; struct 41.5 52 0.0018 27.8 6.3 26 430-455 36-61 (125)
145 3dv8_A Transcriptional regulat 41.4 88 0.003 27.4 8.1 25 431-455 169-193 (220)
146 3s2w_A Transcriptional regulat 41.2 60 0.002 27.5 6.7 66 381-455 23-88 (159)
147 2g7s_A Transcriptional regulat 40.7 36 0.0012 28.7 5.2 44 405-448 2-45 (194)
148 2d1h_A ST1889, 109AA long hypo 40.6 38 0.0013 26.5 4.9 25 431-455 36-60 (109)
149 2qww_A Transcriptional regulat 40.6 62 0.0021 27.1 6.7 25 431-455 55-79 (154)
150 1q1h_A TFE, transcription fact 40.5 34 0.0012 27.8 4.7 27 429-455 31-57 (110)
151 2hr3_A Probable transcriptiona 40.5 1.2E+02 0.0042 24.9 8.4 25 431-455 50-74 (147)
152 3c3w_A Two component transcrip 40.4 19 0.00066 32.5 3.5 32 431-462 164-195 (225)
153 3omt_A Uncharacterized protein 40.2 29 0.00099 25.7 4.0 31 431-462 21-51 (73)
154 1z91_A Organic hydroperoxide r 39.9 38 0.0013 28.1 5.1 66 381-455 13-78 (147)
155 3bj6_A Transcriptional regulat 39.8 65 0.0022 26.8 6.6 25 431-455 54-78 (152)
156 3cdh_A Transcriptional regulat 39.7 77 0.0026 26.6 7.1 25 431-455 57-81 (155)
157 1s3j_A YUSO protein; structura 39.4 55 0.0019 27.4 6.1 25 431-455 51-75 (155)
158 2ict_A Antitoxin HIGA; helix-t 39.3 46 0.0016 25.9 5.2 23 431-453 21-43 (94)
159 1sfu_A 34L protein; protein/Z- 39.2 21 0.00073 28.6 3.1 24 432-455 30-53 (75)
160 2fq4_A Transcriptional regulat 39.1 49 0.0017 28.5 5.9 37 414-450 14-51 (192)
161 2h09_A Transcriptional regulat 38.7 64 0.0022 27.5 6.5 25 431-455 54-78 (155)
162 2eh3_A Transcriptional regulat 38.6 37 0.0013 28.9 4.9 35 416-450 6-41 (179)
163 2x4h_A Hypothetical protein SS 38.5 54 0.0019 27.3 5.9 26 430-455 30-55 (139)
164 2qwt_A Transcriptional regulat 38.5 47 0.0016 28.8 5.7 37 414-450 15-51 (196)
165 3keo_A Redox-sensing transcrip 38.2 38 0.0013 31.9 5.3 51 405-455 6-56 (212)
166 3bs3_A Putative DNA-binding pr 38.0 38 0.0013 24.9 4.3 23 431-453 23-45 (76)
167 2lnb_A Z-DNA-binding protein 1 38.0 66 0.0022 26.1 5.8 35 422-456 25-59 (80)
168 1pdn_C Protein (PRD paired); p 37.8 40 0.0014 27.1 4.8 25 431-455 33-57 (128)
169 3vpr_A Transcriptional regulat 37.7 38 0.0013 29.0 4.9 35 416-450 7-42 (190)
170 3dkw_A DNR protein; CRP-FNR, H 37.4 1.2E+02 0.0039 26.8 8.2 25 431-455 178-202 (227)
171 3op9_A PLI0006 protein; struct 37.4 48 0.0016 26.9 5.2 23 431-453 22-44 (114)
172 2b0l_A GTP-sensing transcripti 37.3 23 0.0008 29.2 3.2 25 431-455 43-67 (102)
173 2ofy_A Putative XRE-family tra 37.1 63 0.0021 24.6 5.6 22 433-454 29-50 (86)
174 4aik_A Transcriptional regulat 36.9 1.6E+02 0.0056 25.1 8.9 28 428-455 43-70 (151)
175 2zcm_A Biofilm operon icaabcd 36.8 40 0.0014 28.9 4.8 35 416-450 11-46 (192)
176 2fbi_A Probable transcriptiona 36.7 43 0.0015 27.5 4.9 25 431-455 50-74 (142)
177 3qbm_A TETR transcriptional re 36.7 57 0.0019 27.7 5.8 43 406-448 2-44 (199)
178 3t76_A VANU, transcriptional r 36.5 43 0.0015 26.8 4.7 31 431-463 37-67 (88)
179 3bd1_A CRO protein; transcript 36.4 45 0.0015 25.3 4.6 24 433-456 13-36 (79)
180 3by6_A Predicted transcription 36.2 75 0.0026 26.9 6.4 26 430-455 34-59 (126)
181 2q24_A Putative TETR family tr 35.9 43 0.0015 28.8 4.9 36 415-450 18-53 (194)
182 2auw_A Hypothetical protein NE 35.8 67 0.0023 29.4 6.3 31 421-453 95-125 (170)
183 3bhq_A Transcriptional regulat 35.8 67 0.0023 28.0 6.3 36 415-450 15-51 (211)
184 1ku9_A Hypothetical protein MJ 35.8 69 0.0024 26.3 6.1 25 431-455 41-65 (152)
185 1j9i_A GPNU1 DBD;, terminase s 35.6 22 0.00074 26.9 2.6 25 432-456 3-27 (68)
186 3b81_A Transcriptional regulat 35.5 43 0.0015 28.6 4.9 38 413-450 12-50 (203)
187 2y75_A HTH-type transcriptiona 35.2 52 0.0018 27.5 5.2 27 429-455 24-50 (129)
188 1d5y_A ROB transcription facto 34.9 78 0.0027 29.6 7.0 78 287-444 4-81 (292)
189 3fmy_A HTH-type transcriptiona 34.9 36 0.0012 25.7 3.8 23 431-453 24-46 (73)
190 2l8n_A Transcriptional repress 34.8 17 0.00058 28.0 1.8 23 431-453 9-31 (67)
191 3ivp_A Putative transposon-rel 34.7 69 0.0024 26.4 5.9 23 431-453 25-47 (126)
192 3e97_A Transcriptional regulat 34.6 63 0.0021 28.8 6.0 31 431-461 175-207 (231)
193 2nx4_A Transcriptional regulat 34.4 46 0.0016 28.8 4.9 36 415-450 13-49 (194)
194 2bv6_A MGRA, HTH-type transcri 34.2 47 0.0016 27.5 4.7 66 381-455 9-75 (142)
195 1gdt_A GD resolvase, protein ( 33.9 2E+02 0.0068 25.3 9.2 24 431-454 158-181 (183)
196 3knw_A Putative transcriptiona 33.8 48 0.0016 28.6 4.9 32 417-448 20-51 (212)
197 2v79_A DNA replication protein 33.8 27 0.00094 30.4 3.3 36 428-463 48-85 (135)
198 1rkt_A Protein YFIR; transcrip 33.7 46 0.0016 28.9 4.8 35 415-449 15-50 (205)
199 1rr7_A Middle operon regulator 33.6 84 0.0029 27.2 6.4 51 402-456 67-117 (129)
200 3cdl_A Transcriptional regulat 33.6 46 0.0016 29.0 4.8 34 416-449 13-47 (203)
201 2wui_A MEXZ, transcriptional r 33.6 42 0.0014 29.4 4.6 36 415-450 14-50 (210)
202 3vib_A MTRR; helix-turn-helix 33.6 47 0.0016 29.0 4.9 36 415-450 13-49 (210)
203 3f52_A CLP gene regulator (CLG 33.5 62 0.0021 26.3 5.3 23 431-453 41-63 (117)
204 1ft9_A Carbon monoxide oxidati 33.5 94 0.0032 27.6 7.0 24 432-455 164-187 (222)
205 2ek5_A Predicted transcription 33.5 85 0.0029 26.8 6.3 26 430-455 27-52 (129)
206 3lsg_A Two-component response 33.4 88 0.003 24.8 6.1 68 347-444 14-81 (103)
207 2g7g_A RHA04620, putative tran 33.2 44 0.0015 30.1 4.7 35 415-450 14-48 (213)
208 3r0a_A Putative transcriptiona 33.1 44 0.0015 28.1 4.4 24 432-455 43-66 (123)
209 2v57_A TETR family transcripti 33.1 52 0.0018 27.9 5.0 36 412-448 14-49 (190)
210 1u78_A TC3 transposase, transp 32.8 45 0.0015 27.6 4.4 25 431-455 22-46 (141)
211 2fu4_A Ferric uptake regulatio 32.7 53 0.0018 25.1 4.5 26 430-455 32-62 (83)
212 3crj_A Transcription regulator 32.7 50 0.0017 28.8 4.9 36 414-449 16-52 (199)
213 1y9q_A Transcriptional regulat 32.6 71 0.0024 28.2 6.0 23 431-453 24-46 (192)
214 4ev0_A Transcription regulator 32.4 1.5E+02 0.0053 25.7 8.2 24 432-455 164-187 (216)
215 4fx0_A Probable transcriptiona 32.4 1.2E+02 0.0041 25.8 7.2 25 431-455 52-76 (148)
216 2w48_A Sorbitol operon regulat 32.4 57 0.0019 31.8 5.7 27 431-457 21-47 (315)
217 3lwj_A Putative TETR-family tr 32.3 52 0.0018 28.1 4.9 38 413-450 13-51 (202)
218 2d6y_A Putative TETR family re 32.2 51 0.0017 28.8 4.9 36 416-451 12-48 (202)
219 2qtq_A Transcriptional regulat 32.2 53 0.0018 28.2 4.9 32 417-448 22-53 (213)
220 2zb9_A Putative transcriptiona 32.1 62 0.0021 28.2 5.4 37 414-450 25-62 (214)
221 3e6c_C CPRK, cyclic nucleotide 32.0 1E+02 0.0035 27.9 7.1 25 431-455 177-201 (250)
222 1sfx_A Conserved hypothetical 32.0 72 0.0025 24.7 5.3 25 431-455 34-58 (109)
223 3bdd_A Regulatory protein MARR 31.9 1.7E+02 0.0059 23.6 7.9 25 431-455 45-69 (142)
224 3he0_A Transcriptional regulat 31.8 54 0.0019 27.8 4.9 32 417-448 17-48 (196)
225 3col_A Putative transcription 31.8 39 0.0013 28.5 3.9 32 417-448 16-47 (196)
226 3o9x_A Uncharacterized HTH-typ 31.8 75 0.0026 26.5 5.7 23 431-453 84-106 (133)
227 2i10_A Putative TETR transcrip 31.7 53 0.0018 28.7 4.9 33 418-450 18-50 (202)
228 3kp7_A Transcriptional regulat 31.7 64 0.0022 27.0 5.2 25 431-455 51-75 (151)
229 3p7n_A Sensor histidine kinase 31.7 23 0.00077 32.3 2.5 29 431-459 213-241 (258)
230 2ras_A Transcriptional regulat 31.6 80 0.0027 27.3 6.0 36 414-449 13-49 (212)
231 3ppb_A Putative TETR family tr 31.6 53 0.0018 27.6 4.8 32 417-448 15-46 (195)
232 1b0n_A Protein (SINR protein); 31.5 48 0.0017 26.4 4.2 24 431-454 14-37 (111)
233 2elh_A CG11849-PA, LD40883P; s 31.2 48 0.0016 26.1 4.1 24 432-455 39-62 (87)
234 3ryp_A Catabolite gene activat 31.1 97 0.0033 26.9 6.6 24 432-455 168-191 (210)
235 3f0c_A TETR-molecule A, transc 31.1 55 0.0019 28.3 4.8 32 417-448 17-48 (216)
236 3kz9_A SMCR; transcriptional r 31.0 50 0.0017 28.1 4.5 32 417-448 23-54 (206)
237 2bnm_A Epoxidase; oxidoreducta 30.7 77 0.0026 28.0 5.9 24 431-454 23-46 (198)
238 2k9l_A RNA polymerase sigma fa 30.7 40 0.0014 26.4 3.4 25 431-455 48-72 (76)
239 2kfs_A Conserved hypothetical 30.7 33 0.0011 30.9 3.2 25 431-455 31-55 (148)
240 2rek_A Putative TETR-family tr 30.7 51 0.0018 28.3 4.6 36 414-450 18-54 (199)
241 2w53_A Repressor, SMet; antibi 30.6 56 0.0019 28.6 4.9 34 416-449 15-49 (219)
242 3tgn_A ADC operon repressor AD 30.4 24 0.00083 29.4 2.3 24 432-455 52-75 (146)
243 3f2g_A Alkylmercury lyase; MER 30.4 60 0.002 31.0 5.2 29 428-456 33-61 (220)
244 3dew_A Transcriptional regulat 30.3 44 0.0015 28.4 4.0 36 415-450 11-47 (206)
245 3f1b_A TETR-like transcription 30.3 58 0.002 27.7 4.8 32 417-448 20-51 (203)
246 2rae_A Transcriptional regulat 30.2 58 0.002 28.0 4.8 37 415-451 20-57 (207)
247 3vp5_A Transcriptional regulat 30.2 54 0.0018 28.4 4.6 36 415-450 15-51 (189)
248 3cec_A Putative antidote prote 29.9 63 0.0022 25.7 4.7 23 431-453 31-53 (104)
249 3gbg_A TCP pilus virulence reg 29.9 1.7E+02 0.0057 27.1 8.3 51 347-398 180-230 (276)
250 2hku_A A putative transcriptio 29.6 59 0.002 28.4 4.8 31 417-448 26-56 (215)
251 3trb_A Virulence-associated pr 29.4 66 0.0023 26.4 4.8 31 431-462 27-57 (104)
252 3dcf_A Transcriptional regulat 29.4 59 0.002 28.0 4.8 32 417-448 37-68 (218)
253 3cwr_A Transcriptional regulat 29.4 46 0.0016 28.4 4.0 38 413-450 18-56 (208)
254 1k78_A Paired box protein PAX5 29.2 62 0.0021 27.4 4.8 25 431-455 48-72 (149)
255 3fym_A Putative uncharacterize 29.2 74 0.0025 27.0 5.2 15 434-448 54-68 (130)
256 2jt1_A PEFI protein; solution 28.7 83 0.0028 24.9 5.0 26 293-318 15-40 (77)
257 2l49_A C protein; P2 bacteriop 28.7 58 0.002 25.4 4.2 23 431-453 17-39 (99)
258 3f8m_A GNTR-family protein tra 28.6 61 0.0021 30.6 5.0 27 428-454 33-59 (248)
259 2gau_A Transcriptional regulat 28.5 1.8E+02 0.0062 25.7 8.0 25 431-455 180-204 (232)
260 2xdn_A HTH-type transcriptiona 28.5 46 0.0016 29.0 3.9 37 414-450 13-50 (210)
261 3kkc_A TETR family transcripti 28.5 56 0.0019 27.3 4.3 37 413-449 13-50 (177)
262 2iai_A Putative transcriptiona 28.4 63 0.0022 28.8 4.9 33 417-449 35-68 (230)
263 3cuo_A Uncharacterized HTH-typ 28.4 76 0.0026 24.5 4.8 25 431-455 38-62 (99)
264 3g3z_A NMB1585, transcriptiona 28.4 1.5E+02 0.0053 24.3 7.1 25 431-455 45-69 (145)
265 2ppx_A AGR_C_3184P, uncharacte 28.3 70 0.0024 25.3 4.7 23 431-453 43-65 (99)
266 3ech_A MEXR, multidrug resista 28.1 1.2E+02 0.0042 24.9 6.4 25 431-455 51-75 (142)
267 1v4r_A Transcriptional repress 28.1 18 0.00063 29.2 1.1 26 430-455 34-59 (102)
268 3d0s_A Transcriptional regulat 27.9 1.4E+02 0.0047 26.4 7.1 25 431-455 177-201 (227)
269 1rzs_A Antirepressor, regulato 27.8 61 0.0021 23.9 3.9 20 433-452 12-31 (61)
270 4a0z_A Transcription factor FA 27.8 78 0.0027 29.1 5.4 29 424-453 20-48 (190)
271 3h5t_A Transcriptional regulat 27.7 37 0.0013 32.8 3.4 27 428-454 6-32 (366)
272 2pg4_A Uncharacterized protein 27.7 1.1E+02 0.0038 23.9 5.7 24 431-454 30-54 (95)
273 1zk8_A Transcriptional regulat 27.7 51 0.0017 27.9 3.9 34 416-449 12-46 (183)
274 2np5_A Transcriptional regulat 27.6 50 0.0017 28.8 4.0 36 415-450 12-48 (203)
275 2e19_A Transcription factor 8; 27.6 1.2E+02 0.004 22.9 5.5 21 433-453 32-52 (64)
276 2hyj_A Putative TETR-family tr 27.3 82 0.0028 27.4 5.3 35 415-449 15-50 (200)
277 2hin_A GP39, repressor protein 27.3 72 0.0025 24.9 4.4 22 433-454 12-33 (71)
278 3u2r_A Regulatory protein MARR 27.3 1E+02 0.0036 26.3 6.0 26 430-455 61-86 (168)
279 3jw4_A Transcriptional regulat 27.2 66 0.0022 26.9 4.5 25 431-455 57-81 (148)
280 3bni_A Putative TETR-family tr 27.1 1E+02 0.0035 27.4 6.1 42 407-448 39-80 (229)
281 1neq_A DNA-binding protein NER 27.0 34 0.0012 26.6 2.4 24 430-453 21-44 (74)
282 3pas_A TETR family transcripti 27.0 51 0.0017 27.8 3.8 43 406-448 2-45 (195)
283 2yve_A Transcriptional regulat 26.9 67 0.0023 27.6 4.6 35 416-450 8-43 (185)
284 2jn6_A Protein CGL2762, transp 26.8 53 0.0018 26.0 3.6 26 431-456 23-48 (97)
285 2hyt_A TETR-family transcripti 26.8 52 0.0018 28.5 3.9 37 414-450 14-51 (197)
286 3mlf_A Transcriptional regulat 26.7 78 0.0027 26.0 4.8 23 431-453 36-58 (111)
287 2iu5_A DHAS, YCEG, HTH-type dh 26.6 35 0.0012 29.5 2.7 34 415-448 16-50 (195)
288 3kjx_A Transcriptional regulat 26.5 30 0.001 33.2 2.4 26 429-454 8-33 (344)
289 3lfp_A CSP231I C protein; tran 26.4 83 0.0028 24.7 4.7 23 431-453 14-40 (98)
290 2dk5_A DNA-directed RNA polyme 26.3 87 0.003 25.4 4.8 28 428-455 33-60 (91)
291 3s5r_A Transcriptional regulat 26.2 63 0.0022 27.8 4.3 32 417-448 16-47 (216)
292 1z4h_A TORI, TOR inhibition pr 25.8 57 0.0019 24.5 3.4 26 431-456 10-35 (66)
293 2nyx_A Probable transcriptiona 25.7 2E+02 0.0067 24.6 7.5 25 431-455 59-83 (168)
294 2dg7_A Putative transcriptiona 25.4 52 0.0018 28.2 3.6 36 416-451 11-47 (195)
295 2o7t_A Transcriptional regulat 25.4 53 0.0018 28.3 3.7 38 414-451 10-48 (199)
296 2fxa_A Protease production reg 25.2 2E+02 0.007 25.9 7.8 25 431-455 62-86 (207)
297 2glo_A Brinker CG9653-PA; prot 25.2 1.2E+02 0.0042 21.8 5.1 21 434-454 28-48 (59)
298 3mvp_A TETR/ACRR transcription 25.2 1.1E+02 0.0037 26.2 5.7 40 412-451 26-66 (217)
299 3b02_A Transcriptional regulat 25.0 76 0.0026 27.6 4.7 24 432-455 140-163 (195)
300 1ylf_A RRF2 family protein; st 24.9 69 0.0024 27.8 4.3 26 430-455 29-54 (149)
301 2zcx_A SCO7815, TETR-family tr 24.8 78 0.0027 28.6 4.8 37 414-450 25-62 (231)
302 3nxc_A HTH-type protein SLMA; 24.7 2.7E+02 0.0094 23.5 8.3 74 297-370 39-113 (212)
303 3c2b_A Transcriptional regulat 24.7 61 0.0021 28.2 4.0 37 415-451 18-55 (221)
304 1p2f_A Response regulator; DRR 24.7 49 0.0017 29.3 3.4 39 423-461 156-197 (220)
305 2dg8_A Putative TETR-family tr 24.5 52 0.0018 28.3 3.4 36 415-450 12-48 (193)
306 3gzi_A Transcriptional regulat 24.5 1E+02 0.0035 26.6 5.4 41 411-451 16-57 (218)
307 2fbq_A Probable transcriptiona 24.3 81 0.0028 28.3 4.8 36 415-450 10-46 (235)
308 1ufm_A COP9 complex subunit 4; 24.2 84 0.0029 25.2 4.3 37 428-464 27-67 (84)
309 2cw1_A SN4M; lambda CRO fold, 24.2 65 0.0022 24.7 3.5 23 433-455 15-37 (65)
310 3edp_A LIN2111 protein; APC883 24.2 1.2E+02 0.0041 28.3 6.2 26 429-454 31-56 (236)
311 2jvl_A TRMBF1; coactivator, he 24.1 93 0.0032 25.3 4.7 24 430-453 48-71 (107)
312 2oi8_A Putative regulatory pro 24.1 83 0.0028 28.1 4.8 38 413-450 17-55 (216)
313 2bgc_A PRFA; bacterial infecti 24.1 1.5E+02 0.0053 26.5 6.7 25 431-455 169-194 (238)
314 1y0u_A Arsenical resistance op 24.0 70 0.0024 25.2 3.9 24 431-454 43-66 (96)
315 3gbg_A TCP pilus virulence reg 24.0 1.1E+02 0.0037 28.4 5.8 35 419-453 173-207 (276)
316 1hw1_A FADR, fatty acid metabo 24.0 1.3E+02 0.0044 27.5 6.2 26 429-454 29-54 (239)
317 3f3x_A Transcriptional regulat 23.9 1.7E+02 0.0057 24.0 6.5 23 433-455 52-74 (144)
318 2wv0_A YVOA, HTH-type transcri 23.8 1.3E+02 0.0046 28.0 6.4 26 429-454 32-57 (243)
319 2id3_A Putative transcriptiona 23.7 97 0.0033 27.5 5.2 39 413-451 41-80 (225)
320 3kcc_A Catabolite gene activat 23.7 1.7E+02 0.0057 26.9 7.0 24 432-455 218-241 (260)
321 2fd5_A Transcriptional regulat 23.6 84 0.0029 26.4 4.6 34 415-448 10-44 (180)
322 1bl0_A Protein (multiple antib 23.6 2.5E+02 0.0084 23.2 7.5 36 290-325 15-50 (129)
323 2oer_A Probable transcriptiona 23.3 54 0.0018 28.9 3.3 37 414-450 26-63 (214)
324 3loc_A HTH-type transcriptiona 23.2 41 0.0014 28.9 2.5 38 413-450 19-57 (212)
325 3eup_A Transcriptional regulat 23.2 42 0.0014 28.6 2.5 32 417-448 17-48 (204)
326 1u8b_A ADA polyprotein; protei 23.1 73 0.0025 26.7 4.0 27 429-455 91-117 (133)
327 2of7_A Putative TETR-family tr 23.0 87 0.003 28.6 4.8 40 412-451 48-88 (260)
328 2gfn_A HTH-type transcriptiona 22.9 67 0.0023 28.3 3.9 36 415-450 12-48 (209)
329 3on2_A Probable transcriptiona 22.9 41 0.0014 28.5 2.3 34 415-448 15-49 (199)
330 3c07_A Putative TETR-family tr 22.8 1.3E+02 0.0044 28.0 6.1 38 413-450 42-80 (273)
331 2oz6_A Virulence factor regula 22.7 61 0.0021 28.2 3.6 25 431-455 164-188 (207)
332 2eth_A Transcriptional regulat 22.6 58 0.002 27.5 3.3 25 431-455 58-82 (154)
333 3eet_A Putative GNTR-family tr 22.6 1.4E+02 0.0048 28.6 6.4 27 428-454 50-76 (272)
334 1uly_A Hypothetical protein PH 22.5 1.2E+02 0.0042 27.5 5.7 25 431-455 33-57 (192)
335 4edg_A DNA primase; catalytic 22.5 17 0.00057 36.6 -0.3 92 349-455 231-324 (329)
336 1r71_A Transcriptional repress 22.4 1.2E+02 0.0042 27.6 5.6 27 431-457 52-78 (178)
337 1t33_A Putative transcriptiona 22.4 1.2E+02 0.004 26.4 5.4 37 414-451 14-51 (224)
338 3frw_A Putative Trp repressor 22.4 95 0.0032 26.5 4.4 24 430-453 57-80 (107)
339 3la7_A Global nitrogen regulat 22.2 1.8E+02 0.0063 26.1 6.9 25 431-455 193-217 (243)
340 2ao9_A Phage protein; structur 22.1 73 0.0025 28.7 3.9 24 430-453 47-70 (155)
341 3v6g_A Probable transcriptiona 22.1 99 0.0034 27.4 4.9 36 415-450 17-53 (208)
342 3cjd_A Transcriptional regulat 22.1 73 0.0025 27.8 3.9 36 415-450 15-51 (198)
343 3geu_A Intercellular adhesion 21.8 46 0.0016 28.3 2.5 34 416-449 7-41 (189)
344 3egq_A TETR family transcripti 21.6 49 0.0017 27.7 2.6 37 415-451 7-44 (170)
345 1sig_A Sigma70, RNA polymerase 21.6 62 0.0021 31.9 3.7 18 269-286 1-18 (339)
346 2qko_A Possible transcriptiona 21.6 56 0.0019 28.5 3.1 37 414-450 30-67 (215)
347 4aci_A HTH-type transcriptiona 21.6 48 0.0016 28.2 2.5 37 415-451 17-54 (191)
348 1hlv_A CENP-B, major centromer 21.5 1.7E+02 0.0059 24.0 6.0 24 431-454 25-48 (131)
349 1vz0_A PARB, chromosome partit 21.4 1.3E+02 0.0044 28.3 5.7 26 431-456 134-159 (230)
350 3bjb_A Probable transcriptiona 21.4 1.1E+02 0.0039 26.7 5.1 38 413-450 23-61 (207)
351 2fbk_A Transcriptional regulat 21.3 90 0.0031 27.2 4.4 23 432-454 87-109 (181)
352 2pij_A Prophage PFL 6 CRO; tra 21.3 1.3E+02 0.0045 21.6 4.7 28 433-461 15-42 (67)
353 1eto_A FIS, factor for inversi 21.2 3.4E+02 0.012 22.1 9.8 67 385-455 27-95 (98)
354 2jj7_A Hemolysin II regulatory 21.0 49 0.0017 28.1 2.5 37 415-451 10-47 (186)
355 2lfc_A Fumarate reductase, fla 21.0 68 0.0023 28.2 3.5 24 431-454 95-118 (160)
356 2zcw_A TTHA1359, transcription 21.0 71 0.0024 27.9 3.6 24 432-455 147-170 (202)
357 3hta_A EBRA repressor; TETR fa 20.9 1.5E+02 0.0052 26.0 5.9 37 414-450 30-67 (217)
358 2fjr_A Repressor protein CI; g 20.8 1.3E+02 0.0044 26.4 5.3 22 433-454 22-43 (189)
359 1t6s_A Conserved hypothetical 20.7 1.7E+02 0.0057 26.4 6.0 27 428-454 19-47 (162)
360 2oqg_A Possible transcriptiona 20.7 1.4E+02 0.0048 23.7 5.2 25 431-455 34-58 (114)
361 1mkm_A ICLR transcriptional re 20.6 1.3E+02 0.0046 28.0 5.7 27 428-454 20-46 (249)
362 3nnr_A Transcriptional regulat 20.6 81 0.0028 27.8 4.0 35 416-450 9-44 (228)
363 3mq0_A Transcriptional repress 20.6 1E+02 0.0034 29.6 4.8 27 428-454 42-68 (275)
364 3hrs_A Metalloregulator SCAR; 20.6 87 0.003 28.8 4.3 25 431-455 20-44 (214)
365 1ub9_A Hypothetical protein PH 20.5 1.2E+02 0.0042 23.3 4.6 25 431-455 30-54 (100)
366 2vxz_A Pyrsv_GP04; viral prote 20.5 99 0.0034 28.1 4.4 41 412-454 7-47 (165)
367 3mky_B Protein SOPB; partition 20.4 1.5E+02 0.005 27.7 5.7 31 431-461 42-72 (189)
368 4hku_A LMO2814 protein, TETR t 20.4 46 0.0016 28.5 2.2 33 416-448 11-44 (178)
369 1ais_B TFB TFIIB, protein (tra 20.4 4.5E+02 0.015 23.2 9.7 29 428-456 162-190 (200)
370 3b73_A PHIH1 repressor-like pr 20.1 1E+02 0.0036 25.9 4.3 30 424-454 21-52 (111)
371 2hs5_A Putative transcriptiona 20.0 1.7E+02 0.0056 27.2 6.1 25 431-455 51-75 (239)
No 1
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=8e-38 Score=329.12 Aligned_cols=229 Identities=32% Similarity=0.563 Sum_probs=203.3
Q ss_pred CCCcHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH------------------HHHhhhCCCCcHHHHHH---
Q 011577 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS------------------KLQSQFGREPTLIEWAK--- 310 (482)
Q Consensus 252 ~~~d~l~~YL~~i~~~~lLT~eEE~eL~~~Iq~l~~le~~~~------------------~l~~~~g~~pt~~ewA~--- 310 (482)
...|+++.||++|+++|+||++||++|+++|+.++.++.... ......|+.|+..+|+.
T Consensus 91 ~~~d~~~~Yl~ei~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (438)
T 1l9z_H 91 STSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKT 170 (438)
T ss_pred CCCChHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchh
Confidence 356899999999999999999999999999999764433211 12224567788888743
Q ss_pred ---------HhcCCHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCch
Q 011577 311 ---------AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRF 381 (482)
Q Consensus 311 ---------a~gmdd~eLi~~l~~Gd~Are~LI~snlrLV~sIAkrY~~~g~d~EDLIQEG~IGLirAiekFDp~kG~rF 381 (482)
+.+++..+|+..+++|..|+++||.+|+++|++||++|.++|.+++|||||||||||+|+++|||.+|++|
T Consensus 171 ~~~~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rF 250 (438)
T 1l9z_H 171 VEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 250 (438)
T ss_pred hhhhhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCh
Confidence 23566788999998888999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhC--CCHHHHHHHHHHcCCCc
Q 011577 382 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG--ITVEKLERLIFITRMPL 459 (482)
Q Consensus 382 STYA~~wIRnaI~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LG--IS~etVk~~L~~ar~~l 459 (482)
+||++|||||.|.++|+++.+.+++|.++...++++.++.+.+.+.+++.|+.+|||+.+| +++++|..++..+...+
T Consensus 251 sTYA~~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~ 330 (438)
T 1l9z_H 251 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPV 330 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cCcccCCCCCCCcccccccCC
Q 011577 460 SMQQPVWADQDTTFQSTFLDA 480 (482)
Q Consensus 460 SLD~~i~~d~~~~l~d~i~D~ 480 (482)
|||.+++++++..+.|+++|.
T Consensus 331 SLd~~~~~d~d~~l~d~l~d~ 351 (438)
T 1l9z_H 331 SLETPIGDEKDSFYGDFIPDE 351 (438)
T ss_pred ccccccccccchhhhhhhccc
Confidence 999999877766777777664
No 2
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=100.00 E-value=1e-38 Score=312.63 Aligned_cols=209 Identities=33% Similarity=0.575 Sum_probs=131.8
Q ss_pred CCcHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHH--------h-----------------hhCCCCcHH
Q 011577 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIR-LEKEKSKLQ--------S-----------------QFGREPTLI 306 (482)
Q Consensus 253 ~~d~l~~YL~~i~~~~lLT~eEE~eL~~~Iq~l~~-le~~~~~l~--------~-----------------~~g~~pt~~ 306 (482)
.+|++++||++|+++||||++||++|+++|+.++. .+.+..... . ..+.+|+..
T Consensus 5 ~~d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~ 84 (245)
T 3ugo_A 5 TSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTV 84 (245)
T ss_dssp CCHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHHH
T ss_pred CCCcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchhH
Confidence 47999999999999999999999999999999875 333322110 0 024689999
Q ss_pred HHHHHhcCCH----HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchh
Q 011577 307 EWAKAIGLSC----RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382 (482)
Q Consensus 307 ewA~a~gmdd----~eLi~~l~~Gd~Are~LI~snlrLV~sIAkrY~~~g~d~EDLIQEG~IGLirAiekFDp~kG~rFS 382 (482)
+||.+.+++. .+|+..+++|+.|+++||..|.++|+++|++|.+++.+++||+||||||||+++++||+.+|++|+
T Consensus 85 ~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F~ 164 (245)
T 3ugo_A 85 EEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFS 164 (245)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHH
T ss_pred HHHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcHH
Confidence 9999988753 456777778889999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhC--CCHHHHHHHHHHcCCCcc
Q 011577 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG--ITVEKLERLIFITRMPLS 460 (482)
Q Consensus 383 TYA~~wIRnaI~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LG--IS~etVk~~L~~ar~~lS 460 (482)
||++||||++|.++++++.+.+++|.++.+.+.++.++.+.|...+++.||++|||+.|| ||+++|++++.+++.++|
T Consensus 165 tya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~ls 244 (245)
T 3ugo_A 165 TYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVS 244 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHTC------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999998
Q ss_pred C
Q 011577 461 M 461 (482)
Q Consensus 461 L 461 (482)
|
T Consensus 245 l 245 (245)
T 3ugo_A 245 L 245 (245)
T ss_dssp -
T ss_pred C
Confidence 6
No 3
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=4.4e-38 Score=329.80 Aligned_cols=225 Identities=34% Similarity=0.583 Sum_probs=200.2
Q ss_pred CCcHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------hCCCCcHHH----
Q 011577 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ---------------------FGREPTLIE---- 307 (482)
Q Consensus 253 ~~d~l~~YL~~i~~~~lLT~eEE~eL~~~Iq~l~~le~~~~~l~~~---------------------~g~~pt~~e---- 307 (482)
..|++++||++|+++|+||++||++|+++|+.+..++. .|... .|+.|+..+
T Consensus 77 ~~d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (423)
T 2a6h_F 77 TSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIK---KLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDP 153 (423)
T ss_dssp THHHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTT
T ss_pred CCcHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHH---HHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhh
Confidence 46899999999999999999999999999999754332 22222 234554333
Q ss_pred -----HHH---HhcCCHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCC
Q 011577 308 -----WAK---AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379 (482)
Q Consensus 308 -----wA~---a~gmdd~eLi~~l~~Gd~Are~LI~snlrLV~sIAkrY~~~g~d~EDLIQEG~IGLirAiekFDp~kG~ 379 (482)
|+. +.++++.+|+..+++|..|+++||.+|+++|++||++|.++|.+++|||||||||||+|+++|||.+|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~ 233 (423)
T 2a6h_F 154 KTVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRF 233 (423)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCC
T ss_pred hhhhhhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 332 346778899999998889999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhC--CCHHHHHHHHHHcCC
Q 011577 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG--ITVEKLERLIFITRM 457 (482)
Q Consensus 380 rFSTYA~~wIRnaI~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LG--IS~etVk~~L~~ar~ 457 (482)
+|+|||+||||+.|.++|+++.+.+++|.++...++++.++.+.+.+.+++.|+.+|||+.|| +++++|..++..+..
T Consensus 234 ~FstYa~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~~~~~~ 313 (423)
T 2a6h_F 234 KFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQE 313 (423)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CccCcccCCCCCCCcccccccCC
Q 011577 458 PLSMQQPVWADQDTTFQSTFLDA 480 (482)
Q Consensus 458 ~lSLD~~i~~d~~~~l~d~i~D~ 480 (482)
.+|||.|++++++..+.|+++|+
T Consensus 314 ~~Sld~~~~~~~~~~l~d~l~d~ 336 (423)
T 2a6h_F 314 PVSLETPIGDEKDSFYGDFIPDE 336 (423)
T ss_dssp CEESSCBCSSSSSCBGGGSSCCS
T ss_pred CcccccccCCCCccchhhhhccc
Confidence 99999999887777888888775
No 4
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=99.93 E-value=3.2e-27 Score=257.65 Aligned_cols=167 Identities=35% Similarity=0.708 Sum_probs=158.0
Q ss_pred CHHHHHHHHhhcH-HH---HHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHH
Q 011577 315 SCRDLKSELHSGN-SS---REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390 (482)
Q Consensus 315 dd~eLi~~l~~Gd-~A---re~LI~snlrLV~sIAkrY~~~g~d~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIR 390 (482)
+..+|+.+++.|+ .| |+.||..|.++|+++|++|++++.+++||+||||||||+++++||+.+|++|+||++||||
T Consensus 357 ~~~~Li~~~~~Gd~~A~~A~~~L~~~y~~~v~~ia~r~~~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~ir 436 (613)
T 3iyd_F 357 QVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 436 (613)
T ss_dssp THHHHHHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSSSTTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHH
Confidence 4567888999998 56 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHcCCCccCcccCCCCCC
Q 011577 391 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470 (482)
Q Consensus 391 naI~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD~~i~~d~~ 470 (482)
|.|.++++++.+.+++|.++.+.+++++++.+.+.+.+|+.|+.+|||+.||+++++|+.++..++.++||+.+++++++
T Consensus 437 n~i~~~lr~~~r~~rip~~~~~~~~k~~r~~~~l~~~~gr~pt~eela~~l~~~~~~v~~~~~~~~~~~sld~~~~~~~~ 516 (613)
T 3iyd_F 437 QAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED 516 (613)
T ss_dssp HHHHHHTTTSCSSSCCCSHHHHTTTTTTTTTTTTTTTTCSCCCTTTTTTTSSCCSSHHHHHHHHSCCCCCSSCCCSSSSS
T ss_pred HHHHHHHHhcCcceeCcHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhccCCcccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred CcccccccCCC
Q 011577 471 TTFQSTFLDAA 481 (482)
Q Consensus 471 ~~l~d~i~D~~ 481 (482)
..+.++++|+.
T Consensus 517 ~~l~d~i~d~~ 527 (613)
T 3iyd_F 517 SHLGDFIEDTT 527 (613)
T ss_dssp CCGGGSCCCSS
T ss_pred ccHHHHhcCCC
Confidence 78888887753
No 5
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.81 E-value=1.5e-20 Score=176.32 Aligned_cols=153 Identities=25% Similarity=0.458 Sum_probs=52.5
Q ss_pred CCHHHHHHHHhhcH-HHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHH
Q 011577 314 LSCRDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392 (482)
Q Consensus 314 mdd~eLi~~l~~Gd-~Are~LI~snlrLV~sIAkrY~~~g~d~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRna 392 (482)
+++.+|+..++.|+ .|++.|+..|.++|+.+|++|.++..+++||+||||++||+++++||+.+|..|.||+++|++|.
T Consensus 13 ~~~~~l~~~~~~gd~~a~~~l~~~~~~~v~~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~ 92 (243)
T 1l0o_C 13 QEMKELIRRSQEGDQEARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGE 92 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHH
Confidence 34567888888898 89999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHcCCCccCcccCCC
Q 011577 393 IRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWA 467 (482)
Q Consensus 393 I~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD~~i~~ 467 (482)
|++++|++. .+++|..+.....+++.+...+....++.++.++|++.+|++.+.+...+.......|++.|+.+
T Consensus 93 ~~d~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 166 (243)
T 1l0o_C 93 IQRFLRDDG-TVKVSRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETVYE 166 (243)
T ss_dssp -------CC-CCTTHHHHHHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC----------
T ss_pred HHHHHHhcC-CccCcHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCccccccc
Confidence 999999987 78999999999999999999999888889999999999999999999988877778888887543
No 6
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.76 E-value=9.5e-18 Score=157.44 Aligned_cols=136 Identities=21% Similarity=0.298 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcc---CCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHHHHHhcCC
Q 011577 327 NSSREKLINANLRLVVHVAKQYQ---GRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRT 403 (482)
Q Consensus 327 d~Are~LI~snlrLV~sIAkrY~---~~g~d~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRnaI~~~Lrkq~r~ 403 (482)
+.|++.||..|.++|+.+|++|. +++.+++||+||||++||+++++||+.+|.+|.||+++||+|.|++++|++.
T Consensus 11 ~~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~-- 88 (239)
T 1rp3_A 11 QIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLD-- 88 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSS--
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC--
Confidence 36899999999999999999998 6789999999999999999999999999899999999999999999999876
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHcC--CCccCcccC
Q 011577 404 IRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITR--MPLSMQQPV 465 (482)
Q Consensus 404 irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~ar--~~lSLD~~i 465 (482)
+.|........++.++...+....++.|+.+|||+.+|++++.+..++.... ..+|+|.++
T Consensus 89 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~ 151 (239)
T 1rp3_A 89 -FGSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVF 151 (239)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCccccccc
Confidence 5677888888899999999999999999999999999999999988876432 335666543
No 7
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.72 E-value=2.7e-17 Score=150.52 Aligned_cols=141 Identities=17% Similarity=0.230 Sum_probs=111.4
Q ss_pred CHHHHHHHHhhcH-HHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHH
Q 011577 315 SCRDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTI 393 (482)
Q Consensus 315 dd~eLi~~l~~Gd-~Are~LI~snlrLV~sIAkrY~~~g~d~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRnaI 393 (482)
++.+|+..++.|+ .|++.|+..|.+.|+.+|++|.+ ..+++|++||+|+++|+++++|++.. .|.+|++.+++|.+
T Consensus 9 ~~~~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~ 85 (194)
T 1or7_A 9 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTA 85 (194)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHH
Confidence 4667888888888 89999999999999999999999 99999999999999999999999864 59999999999999
Q ss_pred HHHHHHhcCCccc----------------------chh---HHHHHHHHHHHHH-------HH-HHhcCCCCcHHHHHHH
Q 011577 394 RKAIFQHSRTIRL----------------------PEN---IYTLLSKVLEAKR-------LY-IQEGNHSPDKEDLARR 440 (482)
Q Consensus 394 ~~~Lrkq~r~irl----------------------P~~---v~e~l~kI~ka~~-------eL-~~e~gr~pS~eEIAe~ 440 (482)
++++|+..+.... |.. ..+....+..+.. .+ ...+..+.|++|||+.
T Consensus 86 ~d~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~EIA~~ 165 (194)
T 1or7_A 86 KNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAI 165 (194)
T ss_dssp HHHHHHHTTCCTHHHHHHHHHHSCCSSCC--------CEEEHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHhccCccccccccccccccccccccCCCChHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHcCCCHHHHHHH
Confidence 9999987654321 000 0011122223332 22 2234457899999999
Q ss_pred hCCCHHHHHHHHHHcCCC
Q 011577 441 VGITVEKLERLIFITRMP 458 (482)
Q Consensus 441 LGIS~etVk~~L~~ar~~ 458 (482)
||||+++|+..+++++..
T Consensus 166 lgis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 166 MDCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999988653
No 8
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.70 E-value=3.6e-17 Score=165.77 Aligned_cols=86 Identities=42% Similarity=0.914 Sum_probs=79.7
Q ss_pred HHHHHHHhhcH----HHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHH
Q 011577 317 RDLKSELHSGN----SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392 (482)
Q Consensus 317 ~eLi~~l~~Gd----~Are~LI~snlrLV~sIAkrY~~~g~d~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRna 392 (482)
..|+.+++.|+ .|++.||..|.++|+++|++|++++.+++||+||||||||+++++|++.+|.+|+||++|||+|.
T Consensus 250 ~~l~~~~~~gd~~~~~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn~ 329 (339)
T 1sig_A 250 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 329 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHH
Confidence 55788888887 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 011577 393 IRKAIFQHSR 402 (482)
Q Consensus 393 I~~~Lrkq~r 402 (482)
|++++|++.+
T Consensus 330 ~~~~lr~~~r 339 (339)
T 1sig_A 330 ITRSIADQAR 339 (339)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHhcC
Confidence 9999998753
No 9
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.68 E-value=3.2e-18 Score=155.66 Aligned_cols=144 Identities=9% Similarity=0.032 Sum_probs=114.6
Q ss_pred cCCHHHHHHH-HhhcH-HHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHH
Q 011577 313 GLSCRDLKSE-LHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390 (482)
Q Consensus 313 gmdd~eLi~~-l~~Gd-~Are~LI~snlrLV~sIAkrY~~~g~d~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIR 390 (482)
.+++.+|+.. ++.|+ .|++.|+..|.+.|+.+|+++.++..+++|++||+|+++|+++++|++..| .|.+|++.+++
T Consensus 10 ~~~~~~li~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~ 88 (184)
T 2q1z_A 10 RTDWVALMRAIRDHRDEAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIAR 88 (184)
T ss_dssp TTCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHH
T ss_pred CccHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHH
Confidence 3678889998 88888 899999999999999999999999999999999999999999999998765 79999999999
Q ss_pred HHHHHHHHHhcCCcccc-----------hhH---HHHHHHHHHHHH-------HH-HHhcCCCCcHHHHHHHhCCCHHHH
Q 011577 391 QTIRKAIFQHSRTIRLP-----------ENI---YTLLSKVLEAKR-------LY-IQEGNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 391 naI~~~Lrkq~r~irlP-----------~~v---~e~l~kI~ka~~-------eL-~~e~gr~pS~eEIAe~LGIS~etV 448 (482)
|.+++++|+..+...++ ... .+....+..+.. .+ ...+..+.+++|||+.||||+++|
T Consensus 89 n~~~d~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV 168 (184)
T 2q1z_A 89 NRRIDGLRKDRQPEPEDLFWGPDSEPDQADVYEMQQENARLGRAIARLPEAQRALIERAFFGDLTHRELAAETGLPLGTI 168 (184)
T ss_dssp TSCCTTTCSSSCCCCCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSCCSSCCSTTTCCCCCHHH
T ss_pred HHHHHHHHhhcccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 99999999876543221 111 111222333332 21 222334789999999999999999
Q ss_pred HHHHHHcCC
Q 011577 449 ERLIFITRM 457 (482)
Q Consensus 449 k~~L~~ar~ 457 (482)
+..+++++.
T Consensus 169 ~~~l~ra~~ 177 (184)
T 2q1z_A 169 KSRIRLALD 177 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
No 10
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.50 E-value=2.5e-14 Score=126.31 Aligned_cols=105 Identities=18% Similarity=0.296 Sum_probs=75.3
Q ss_pred CCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHHHHHhcCCcccc------------------------
Q 011577 352 GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP------------------------ 407 (482)
Q Consensus 352 g~d~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRnaI~~~Lrkq~r~irlP------------------------ 407 (482)
|.+++|++||||++||+++++||+.+ .+|.||++++++|.+++++|++.+....+
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLNEALKTNAILEDSAYFDDEGHNI 79 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhHHHhhhhhhhccCCCCCcccchh
Confidence 67899999999999999999999987 78999999999999999999865322111
Q ss_pred ----------hh----------HHHHHH-HHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHcCC
Q 011577 408 ----------EN----------IYTLLS-KVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRM 457 (482)
Q Consensus 408 ----------~~----------v~e~l~-kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~ar~ 457 (482)
.. +...+. .+....+.+...+..+.|++|||+.||||.++|+..+++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~e~~~~l~~~l~~~L~~~~r~v~~~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~ 150 (164)
T 3mzy_A 80 NNYKSSESNPEEAYLLKEEIEEFKKFSENNFSKFEKEVLTYLIRGYSYREIATILSKNLKSIDNTIQRIRK 150 (164)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hhhcccCCCHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00 111222 222222232224556889999999999999999999998864
No 11
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.39 E-value=9.6e-15 Score=131.77 Aligned_cols=127 Identities=9% Similarity=0.054 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHHHHHhcCCcccc--
Q 011577 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP-- 407 (482)
Q Consensus 330 re~LI~snlrLV~sIAkrY~~~g~d~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRnaI~~~Lrkq~r~irlP-- 407 (482)
|+.|+..|.+.|+.+|++++++..+++|++||+|+++|+++++|++. ..|.+|++.+++|.+++++|+.......+
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~--~~~~~wl~~ia~n~~~d~~R~~~~~~~~~e~ 80 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRD--VDPRLGLYRMFQGIWASANADGEAQTSQSDA 80 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCS--SCTTHHHHHHHHHHHHHHTTTTSCCCCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCC--CcHHHHHHHHHHHHHHHHhhccCcccCCcch
Confidence 57799999999999999999999999999999999999999999875 36999999999999999998753211101
Q ss_pred ----hhHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHhCCCHHHHHHHHHHcCCC
Q 011577 408 ----ENIYTLLSKVLEAKRLYI-QEGNHSPDKEDLARRVGITVEKLERLIFITRMP 458 (482)
Q Consensus 408 ----~~v~e~l~kI~ka~~eL~-~e~gr~pS~eEIAe~LGIS~etVk~~L~~ar~~ 458 (482)
..+...+..+....+++. ..+..+.|++|||+.||||+++|+..+.+++..
T Consensus 81 ~~~~~~l~~~l~~Lp~~~r~vl~L~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~ 136 (157)
T 2lfw_A 81 EGTEAVARARLARMTPLSRQALLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALAE 136 (157)
T ss_dssp SSSSSTTTTTTTTSCTTHHHHHTTTSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 112223333333333322 234457899999999999999999999988653
No 12
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.36 E-value=4.7e-13 Score=132.44 Aligned_cols=131 Identities=11% Similarity=0.013 Sum_probs=103.0
Q ss_pred hcH-HHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHHHHHhcCC
Q 011577 325 SGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRT 403 (482)
Q Consensus 325 ~Gd-~Are~LI~snlrLV~sIAkrY~~~g~d~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRnaI~~~Lrkq~r~ 403 (482)
+|+ .+|+.|+..|.+.++.+|++|+++..+++|++||.|+.+|+..++|++. ..|.+|++++++|.+++++|+....
T Consensus 17 ~g~~~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~~~d~~r~~~~~ 94 (286)
T 3n0r_A 17 RGSEMHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAIWLSSGAQLEVG 94 (286)
T ss_dssp ---CCCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHHHSCTTC----C
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHHHHhhccccccC
Confidence 445 6999999999999999999999999999999999999999999999874 4699999999999999998864321
Q ss_pred cc----cchhHHHHHHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHHHHHHcCC
Q 011577 404 IR----LPENIYTLLSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLERLIFITRM 457 (482)
Q Consensus 404 ir----lP~~v~e~l~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~~L~~ar~ 457 (482)
.. ....+...+.++....++. ......+.+++|||+.||+++++|+..+.+++.
T Consensus 95 ~~~~~~~~~~l~~al~~Lp~~~R~v~~L~~~eg~s~~EIA~~lgis~~tVks~l~rA~~ 153 (286)
T 3n0r_A 95 HDQGLHAGDDAAQRLMRIAPRSRQAFLLTALEGFTPTEAAQILDCDFGEVERLIGDAQA 153 (286)
T ss_dssp CCCCCCTTSHHHHHHHHHSCHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHhCCHHHeeEEEEEeeCCCCHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 11 1134556666665555543 333445789999999999999999999887753
No 13
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=99.26 E-value=7.5e-12 Score=106.16 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=72.3
Q ss_pred HHHHHHhhcH-HHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHH
Q 011577 318 DLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKA 396 (482)
Q Consensus 318 eLi~~l~~Gd-~Are~LI~snlrLV~sIAkrY~~~g~d~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRnaI~~~ 396 (482)
+|+..++.|+ .|++.|+..|.+.|+.+|.++ ++..+++|++||+|+.+|+.+.+|++. ..|.+|++.+++|.++++
T Consensus 13 ~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~ 89 (112)
T 2o7g_A 13 ALALSAAKGNGRALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSAR--SSARTWLLAIARHVVADH 89 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCS--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHH
Confidence 5777777777 899999999999999999999 888999999999999999999999874 479999999999999999
Q ss_pred HHHhcCCc
Q 011577 397 IFQHSRTI 404 (482)
Q Consensus 397 Lrkq~r~i 404 (482)
+|++.+..
T Consensus 90 ~R~~~~~~ 97 (112)
T 2o7g_A 90 IRHVRSRP 97 (112)
T ss_dssp TC------
T ss_pred HHHhhccc
Confidence 98876543
No 14
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=99.17 E-value=1.9e-11 Score=99.15 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=68.3
Q ss_pred hhcH-HHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHHHHHhc
Q 011577 324 HSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHS 401 (482)
Q Consensus 324 ~~Gd-~Are~LI~snlrLV~sIAkrY~~~g~d~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRnaI~~~Lrkq~ 401 (482)
..|+ .+++.|+..|.+.|+.+|.++.++..+++|++||+|+.+|+.+++|++. ..|.+|++.+++|.+++++|++.
T Consensus 7 ~~g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R~~~ 83 (87)
T 1h3l_A 7 TAERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYRKKQ 83 (87)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC---
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHHHhc
Confidence 4556 8999999999999999999999999999999999999999999999875 47999999999999999998765
No 15
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.93 E-value=1.5e-09 Score=105.52 Aligned_cols=142 Identities=6% Similarity=-0.080 Sum_probs=103.4
Q ss_pred HHHHHHHHhhcH-HHHHHHHHHHHHHHHHHHHHccCCCCCHhHHH----HHHHHHHHHhHHhhCCCCCCchhhHHHHHHH
Q 011577 316 CRDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLL----QEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390 (482)
Q Consensus 316 d~eLi~~l~~Gd-~Are~LI~snlrLV~sIAkrY~~~g~d~EDLI----QEG~IGLirAiekFDp~kG~rFSTYA~~wIR 390 (482)
++.|+.+++.+| .+++.+...|.++++.+............|+. ||.|+.+|+.+..|++. ..|.+|++.+++
T Consensus 84 ~~~ll~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~--~~~~~WL~~ia~ 161 (258)
T 3clo_A 84 EDCIYRRIHPEDLVEKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNT--PAGNVWLIFCLY 161 (258)
T ss_dssp CHHHHTTBCHHHHHHHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEEC--TTSCEEEEEEEE
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCC--CchHHHHHHHHH
Confidence 346777887777 78999999999999999988877777888886 99999999999999864 369999999999
Q ss_pred HHHHHHHHHhcCCcc----------cchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHcCCCc
Q 011577 391 QTIRKAIFQHSRTIR----------LPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPL 459 (482)
Q Consensus 391 naI~~~Lrkq~r~ir----------lP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (482)
|.+.++++....... .+..+...+..+....++.......+.+++|||+.||+|+++|+..+++++..+
T Consensus 162 n~~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~erevl~L~~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL 240 (258)
T 3clo_A 162 SLSADQRPEQGIYATITQMERGEVETLSLSEEHRNILSEREKEILRCIRKGLSSKEIAATLYISVNTVNRHRQNILEKL 240 (258)
T ss_dssp EECSCCCCCSSCCCEEEETTTTEEEECCCHHHHTTSSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHcchhhhhHHHHHHHhhcccccccchhhHHHHccCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 988877543211000 011122233333333333211112478999999999999999999999886543
No 16
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=94.74 E-value=0.0093 Score=65.04 Aligned_cols=34 Identities=32% Similarity=0.570 Sum_probs=13.7
Q ss_pred CCcHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHH
Q 011577 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286 (482)
Q Consensus 253 ~~d~l~~YL~~i~~~~lLT~eEE~eL~~~Iq~l~ 286 (482)
.+||+++||++|++.||||+++|++|+++|..+.
T Consensus 94 ~~dpvrmyl~emg~~~ll~~~~e~~~ak~ie~g~ 127 (613)
T 3iyd_F 94 TTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 (613)
T ss_dssp -----------C--------CSSSTTTHHHHHHH
T ss_pred CCCcHHHHHHHhcccccCCchhHHHHHHHHHHhH
Confidence 5799999999999999999999999999999854
No 17
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=94.13 E-value=0.026 Score=45.93 Aligned_cols=31 Identities=10% Similarity=0.078 Sum_probs=26.9
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHHcCCC
Q 011577 428 GNHSPDKEDLARRVGITVEKLERLIFITRMP 458 (482)
Q Consensus 428 ~gr~pS~eEIAe~LGIS~etVk~~L~~ar~~ 458 (482)
+..+.+++|||+.|||+..+|+..+++++..
T Consensus 50 ~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3457899999999999999999999988643
No 18
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=93.64 E-value=0.82 Score=41.77 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=25.9
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHHcCC
Q 011577 429 NHSPDKEDLARRVGITVEKLERLIFITRM 457 (482)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~ar~ 457 (482)
..+.|++|||+.||||.++|+.++++++.
T Consensus 201 ~~g~s~~EIA~~lgis~~~V~~~~~ra~~ 229 (239)
T 1rp3_A 201 YEELPAKEVAKILETSVSRVSQLKAKALE 229 (239)
T ss_dssp TSCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999988754
No 19
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=92.77 E-value=0.11 Score=40.31 Aligned_cols=50 Identities=14% Similarity=0.072 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHcCCCc
Q 011577 410 IYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPL 459 (482)
Q Consensus 410 v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (482)
+...+..+....+++...+..+.+++|||+.||++..+|+..+.+++..+
T Consensus 10 l~~~l~~L~~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 10 IRARLQTLSERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HHHHHHHHCHHHHHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 33444444444444333345578999999999999999999998876544
No 20
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=92.45 E-value=0.13 Score=39.26 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=26.7
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHcCCCc
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFITRMPL 459 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (482)
.+.|++|||+.||+|.++|+..+.++...+
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKL 53 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 578999999999999999999999886543
No 21
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=91.92 E-value=1.3 Score=46.42 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=26.1
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHcCCC
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFITRMP 458 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~ 458 (482)
.+.|++|||+.||||.++|+.+++++...
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~RAlkK 422 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIENKALRK 422 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 57899999999999999999999888654
No 22
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=91.45 E-value=0.11 Score=47.63 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=0.0
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHHcCCCc
Q 011577 428 GNHSPDKEDLARRVGITVEKLERLIFITRMPL 459 (482)
Q Consensus 428 ~gr~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (482)
+..+.|++|||+.||||+++|+..+++++..+
T Consensus 211 ~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 242 (243)
T 1l0o_C 211 YYKDQTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp --------------------------------
T ss_pred HhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 34577999999999999999999999887643
No 23
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=90.93 E-value=0.15 Score=42.94 Aligned_cols=29 Identities=10% Similarity=0.167 Sum_probs=25.8
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHcCCC
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFITRMP 458 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~ 458 (482)
.+.|++|||+.||+|.++|+.++.+|...
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlkk 66 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALRK 66 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 57899999999999999999999887543
No 24
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=90.66 E-value=0.4 Score=37.04 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=25.6
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHcCCC
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFITRMP 458 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~ 458 (482)
.+.|++|||+.||+|.++|+..+.++...
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRK 57 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999998877543
No 25
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=90.55 E-value=0.058 Score=43.20 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=26.7
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHHcCCCc
Q 011577 429 NHSPDKEDLARRVGITVEKLERLIFITRMPL 459 (482)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (482)
..+.+++|||+.||++..+|+..+.+++..+
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHMLKKM 64 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3478999999999999999999998876543
No 26
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=90.53 E-value=0.38 Score=38.62 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=26.2
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHcCCC
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFITRMP 458 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~ 458 (482)
.+.|++|||+.||+|.++|+..+.+++..
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRK 65 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999988654
No 27
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=89.90 E-value=0.51 Score=35.41 Aligned_cols=30 Identities=17% Similarity=0.058 Sum_probs=26.3
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHHcCCC
Q 011577 429 NHSPDKEDLARRVGITVEKLERLIFITRMP 458 (482)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~ar~~ 458 (482)
..+.+++|||+.||++..+|+..+++++..
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSRVARARDA 58 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 447899999999999999999999988643
No 28
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=89.16 E-value=0.2 Score=41.09 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=26.2
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHcCCCc
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFITRMPL 459 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (482)
.+.+++|||+.|||+..+|+..+.+++..+
T Consensus 41 ~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 41 EGLTNKQIADRMFLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 368999999999999999999998876544
No 29
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=87.73 E-value=0.44 Score=40.59 Aligned_cols=29 Identities=10% Similarity=-0.022 Sum_probs=25.9
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHHcCC
Q 011577 429 NHSPDKEDLARRVGITVEKLERLIFITRM 457 (482)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~ar~ 457 (482)
..+.|++|||+.||+|+.+|+..+++++.
T Consensus 39 ~~g~s~~EIA~~lgiS~~tV~~~l~ra~~ 67 (113)
T 1xsv_A 39 LEDYSLSEIADTFNVSRQAVYDNIRRTGD 67 (113)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44789999999999999999999998764
No 30
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=87.24 E-value=0.85 Score=31.13 Aligned_cols=26 Identities=4% Similarity=0.068 Sum_probs=22.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcC
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITR 456 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar 456 (482)
+.+..|||+.|||+..+|...+....
T Consensus 21 g~s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 21 NVSLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhhHH
Confidence 46999999999999999999987543
No 31
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=86.72 E-value=0.5 Score=34.76 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=26.2
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHcCCCcc
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFITRMPLS 460 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~lS 460 (482)
.+.+.+|||+.||+++.+|+..+.++...+-
T Consensus 12 ~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 12 EGYTNHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp TSCCSHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 3679999999999999999999988765443
No 32
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=86.05 E-value=0.075 Score=43.13 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=26.3
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHcCCCc
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFITRMPL 459 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (482)
.+.+++|||+.|||+..+|+..+.+++..+
T Consensus 43 ~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 43 KGYSNQEIASASHITIKTVKTHVSNILSKL 72 (91)
T ss_dssp TTCCTTHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 368999999999999999999999886544
No 33
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=85.47 E-value=0.56 Score=38.36 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=26.9
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHcCCCccC
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSM 461 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~lSL 461 (482)
.+.+++|||+.|||++.+|+..+.++...+-+
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 46799999999999999999999887655433
No 34
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=84.91 E-value=1.4 Score=33.30 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=26.1
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHHcCCCc
Q 011577 429 NHSPDKEDLARRVGITVEKLERLIFITRMPL 459 (482)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (482)
..+.+++|||+.||++..+|+..+.++...+
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAMQKL 54 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3467999999999999999999998775443
No 35
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=84.38 E-value=1.7 Score=34.86 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=23.6
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 429 NHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
|..||..|||+.+|+|..+|+.-|..-
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~L 48 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQL 48 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 448999999999999999999888743
No 36
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=83.99 E-value=1.1 Score=32.41 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
+.+..|||+.||++..+|...+..
T Consensus 31 g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 31 GYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHh
Confidence 569999999999999999988753
No 37
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=82.49 E-value=1.2 Score=38.08 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=25.2
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHcCC
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFITRM 457 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~ 457 (482)
.+.|++|||+.||+|..+|+..+++++.
T Consensus 37 ~g~s~~EIA~~lgiS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 37 DDYSLAEIADEFGVSRQAVYDNIKRTEK 64 (113)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3679999999999999999999998764
No 38
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=82.17 E-value=0.6 Score=39.00 Aligned_cols=31 Identities=10% Similarity=0.135 Sum_probs=26.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcCCCccC
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITRMPLSM 461 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSL 461 (482)
+.+++|||+.|||++.+|+..+.++...+-.
T Consensus 49 G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 49 GFLVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 5799999999999999999999887655444
No 39
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=75.15 E-value=2 Score=40.27 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=27.2
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHcCCCccC
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSM 461 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~lSL 461 (482)
.+.|.+|||+.|||++.+|+..+.+++..+-.
T Consensus 187 ~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 187 VGKTMEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 47899999999999999999999887655433
No 40
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=72.21 E-value=2 Score=40.20 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=26.5
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHcCCCcc
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFITRMPLS 460 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~lS 460 (482)
.+.|.+|||+.|||++.+|+..+..++..+-
T Consensus 189 ~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 189 KGKTASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 3679999999999999999999988765543
No 41
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=71.54 E-value=5.3 Score=30.60 Aligned_cols=28 Identities=7% Similarity=0.192 Sum_probs=23.8
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 428 GNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 428 ~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.+...+..|||+.+|++..+|..++..-
T Consensus 22 ~~~~~s~~eLA~~lglsr~tv~~~l~~L 49 (67)
T 2heo_A 22 DGGPVAIFQLVKKCQVPKKTLNQVLYRL 49 (67)
T ss_dssp HCSCEEHHHHHHHHCSCHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3446799999999999999999998753
No 42
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=70.92 E-value=7.4 Score=35.50 Aligned_cols=39 Identities=26% Similarity=0.293 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 416 KVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 416 kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
++-..+.++..+.+..||..|||+.+|++..+|...+..
T Consensus 9 ~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~ 47 (196)
T 3k2z_A 9 KVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIA 47 (196)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHH
Confidence 444555555566677899999999999999999888764
No 43
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=70.63 E-value=2.5 Score=39.82 Aligned_cols=32 Identities=9% Similarity=0.011 Sum_probs=27.0
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHcCCCccC
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSM 461 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~lSL 461 (482)
.+.|.+|||+.|||++.+|+..+..+...+-.
T Consensus 189 ~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (237)
T 3szt_A 189 VGKTYGEIGLILSIDQRTVKFHIVNAMRKLNS 220 (237)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 36799999999999999999999887655443
No 44
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=69.96 E-value=10 Score=29.05 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHH
Q 011577 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 417 I~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+....+.+..+. +.|..|+|+.+|++..+|..+.+
T Consensus 13 l~~~l~~~r~~~--gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 13 LKAIWEKKKNEL--GLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHHHHHHHHHHH--TCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHhCcCHHHHHHHHc
Confidence 333344444333 47999999999999999998875
No 45
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=69.78 E-value=7.3 Score=31.19 Aligned_cols=30 Identities=0% Similarity=0.086 Sum_probs=24.8
Q ss_pred HHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 424 YIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 424 L~~e~gr~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
+..+.+ ..+..|||+.||+|+.+|+..|..
T Consensus 10 ~L~~~g-~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 10 LLALRG-RMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp HHHHSC-SBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHcC-CCcHHHHHHHHCcCHHHHHHHHHH
Confidence 334455 789999999999999999998764
No 46
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=68.62 E-value=9.2 Score=30.75 Aligned_cols=27 Identities=15% Similarity=0.461 Sum_probs=23.7
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 429 NHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
|...+..|||+.||++..+|+..|..-
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~L 51 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYSL 51 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 346799999999999999999998765
No 47
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=65.44 E-value=8.2 Score=31.70 Aligned_cols=30 Identities=7% Similarity=0.118 Sum_probs=25.0
Q ss_pred HHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 424 YIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 424 L~~e~gr~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
+..+.+ ..+..|||+.||+|+.+|+..|..
T Consensus 10 ~L~~~g-~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 10 MLALQG-RMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp HHHHSC-SEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHcC-CCcHHHHHHHHCcCHHHHHHHHHH
Confidence 334455 789999999999999999998874
No 48
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=65.25 E-value=9.2 Score=29.78 Aligned_cols=25 Identities=8% Similarity=0.197 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.++..|||+.+|++..+|...+..-
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~L 38 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLLL 38 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6899999999999999999988743
No 49
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=65.18 E-value=13 Score=30.06 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 417 I~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+.++...+...+...++.++||+.+|++...+..+.+..
T Consensus 4 i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 334444455566667899999999999999998887754
No 50
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=64.05 E-value=3.5 Score=39.71 Aligned_cols=31 Identities=10% Similarity=0.038 Sum_probs=26.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcCCCccC
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITRMPLSM 461 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSL 461 (482)
+.|.+|||+.|||++.+|+..+..++..+-.
T Consensus 212 G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 212 GKTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 6799999999999999999999887655433
No 51
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=63.88 E-value=11 Score=29.76 Aligned_cols=26 Identities=15% Similarity=0.474 Sum_probs=23.0
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
...|..|||+.||++..+|...+..-
T Consensus 30 ~~~t~~eLA~~Lgvs~~tV~~~L~~L 55 (77)
T 1qgp_A 30 KATTAHDLSGKLGTPKKEINRVLYSL 55 (77)
T ss_dssp SCEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35799999999999999999998754
No 52
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=63.82 E-value=36 Score=28.30 Aligned_cols=65 Identities=6% Similarity=0.138 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 382 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 382 STYA~~wIRnaI~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
-.|..+.+.+.+.+.+.+......+.......+..+. .. + ..+..|||+.+|++..+|..++..-
T Consensus 11 l~~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~-------~~-~-~~t~~eLa~~l~~~~~~vs~~l~~L 75 (143)
T 3oop_A 11 ISFDVNTTAKKMHLFLMRSIASYDVTPEQWSVLEGIE-------AN-E-PISQKEIALWTKKDTPTVNRIVDVL 75 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCHHHHHHHHHHH-------HH-S-SEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHH-------Hc-C-CcCHHHHHHHHCCCHhhHHHHHHHH
Confidence 3455566666677777666554455544343333332 12 3 6799999999999999999988753
No 53
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=63.71 E-value=7.4 Score=31.74 Aligned_cols=24 Identities=8% Similarity=0.322 Sum_probs=22.2
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 432 PDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.+..|||+.|||+..+|+..|..-
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~L 54 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDL 54 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 899999999999999999998754
No 54
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=63.08 E-value=31 Score=28.35 Aligned_cols=66 Identities=9% Similarity=0.100 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 381 FSTYA~~wIRnaI~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.-.|+.+.+.+.+.+.+.+......++......+..+ .. .+ ..+..|||+.+|++..+|..++..-
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l-------~~-~~-~~~~~~la~~l~~~~~tvs~~l~~L 72 (138)
T 1jgs_A 7 PLGRLIHMVNQKKDRLLNEYLSPLDITAAQFKVLCSI-------RC-AA-CITPVELKKVLSVDLGALTRMLDRL 72 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHH-------HH-HS-SBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH-------Hh-cC-CCCHHHHHHHHCCChHHHHHHHHHH
Confidence 3456677777777777766655455554433333333 11 23 5799999999999999999988754
No 55
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=62.91 E-value=39 Score=27.70 Aligned_cols=63 Identities=11% Similarity=0.050 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 384 YA~~wIRnaI~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
|..+.+.+.+...+.+......+.......+..+ . ..+ ..+..|||+.+|++..+|...+..-
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l-------~-~~~-~~~~~ela~~l~~s~~tvs~~l~~L 67 (138)
T 3bpv_A 5 GLLSIILRSHRVFIGRELGHLNLTDAQVACLLRI-------H-REP-GIKQDELATFFHVDKGTIARTLRRL 67 (138)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGTCCHHHHHHHHHH-------H-HST-TCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-------H-HcC-CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455555666666655544334443333333222 2 223 6799999999999999999988743
No 56
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=62.70 E-value=17 Score=28.28 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHH
Q 011577 413 LLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 413 ~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
...++....+.+.... +.|.+++|+.+|++..+|..+..
T Consensus 14 ~~~~l~~~l~~~R~~~--glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 14 DARRLKAIYEKKKNEL--GLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HHHHHHHHHHHHHHHH--TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHc
Confidence 3444555555544444 47999999999999999998876
No 57
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=61.37 E-value=15 Score=29.74 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcC-CCCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 417 VLEAKRLYIQEGN-HSPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 417 I~ka~~eL~~e~g-r~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
+.++..-+...+. ..++.++||+.+|++...+..+.+.
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4444445555665 6789999999999999999888764
No 58
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=60.95 E-value=18 Score=26.52 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=20.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|..++|+.+|++..+|..+..
T Consensus 26 g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 26 GLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHC
Confidence 58999999999999999998865
No 59
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=60.90 E-value=8.7 Score=36.01 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=26.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcCCCc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITRMPL 459 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (482)
+.|.+|||+.||||..+|..++..|+-..
T Consensus 24 g~tQ~eIA~~lGiSr~~VSR~L~~A~~~~ 52 (192)
T 1zx4_A 24 GMSQKDIAAKEGLSQAKVTRALQAASAPE 52 (192)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHTSCH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHHHhccch
Confidence 58999999999999999999999988443
No 60
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=59.98 E-value=13 Score=30.43 Aligned_cols=39 Identities=28% Similarity=0.306 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 417 I~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+.++...+...+...+++++||+.+|++...+..+.+..
T Consensus 9 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 9 LTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444455555667899999999999999998887654
No 61
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=59.70 E-value=17 Score=29.55 Aligned_cols=38 Identities=11% Similarity=0.005 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 418 LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 418 ~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.++...+...+...++.++||+.+|++...+....+..
T Consensus 8 ~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 8 QNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444455556667899999999999999998887643
No 62
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=59.50 E-value=40 Score=27.71 Aligned_cols=66 Identities=11% Similarity=0.058 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 383 TYA~~wIRnaI~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.|..+.+.+.+.+.+.+......++......+.. +....+...+..|||+.+|++..+|..++..-
T Consensus 9 ~~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~-------l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~L 74 (141)
T 3bro_A 9 GRLLKIASNQMSTRFDIFAKKYDLTGTQMTIIDY-------LSRNKNKEVLQRDLESEFSIKSSTATVLLQRM 74 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH-------HHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-------HHHCCCCCcCHHHHHHHHCCCcchHHHHHHHH
Confidence 3444555555555554433233344332222222 22233235799999999999999999988754
No 63
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=58.40 E-value=48 Score=27.85 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 382 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 382 STYA~~wIRnaI~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
-.|..+++.+.+.+.+.+......++......+..+ . ..+ ..+..|||+.+|++..+|..++..-
T Consensus 21 l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l-------~-~~~-~~t~~ela~~l~~s~~tvs~~l~~L 85 (153)
T 2pex_A 21 LSFALYSANLAMHKLYRGLLKALDLTYPQYLVMLVL-------W-ETD-ERSVSEIGERLYLDSATLTPLLKRL 85 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHH-------H-HSC-SEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH-------H-hCC-CcCHHHHHHHhCCCcccHHHHHHHH
Confidence 446666666677777766554445544333333222 1 233 6799999999999999999988753
No 64
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=57.79 E-value=11 Score=31.85 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=19.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERL 451 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~ 451 (482)
+.|+.|||+.||+|..+|-.+
T Consensus 58 e~TQREIA~~lGiS~stISRi 78 (101)
T 1jhg_A 58 EMSQRELKNELGAGIATITRG 78 (101)
T ss_dssp CSCHHHHHHHHCCCHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhhhHH
Confidence 589999999999999998777
No 65
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=57.73 E-value=3.6 Score=42.70 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=21.7
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHcCCC
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFITRMP 458 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~ 458 (482)
.+.|++|||+.||||.++|+.++.+|...
T Consensus 379 e~~Tl~EIA~~lgiS~erVrqi~~rAl~k 407 (423)
T 2a6h_F 379 REHTLEEVGAFFGVTRERIRQIENKALRK 407 (423)
T ss_dssp -----CHHHHSSSSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 57899999999999999999999887543
No 66
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=57.31 E-value=23 Score=28.41 Aligned_cols=32 Identities=6% Similarity=-0.016 Sum_probs=24.9
Q ss_pred HHHhcCC-CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 424 YIQEGNH-SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 424 L~~e~gr-~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+...+.. .++.++||+.+|++...+....+..
T Consensus 11 i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 11 IEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444554 6899999999999999998877643
No 67
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=57.30 E-value=47 Score=27.63 Aligned_cols=25 Identities=8% Similarity=0.078 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~~L 80 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVDRM 80 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHH
Confidence 6799999999999999999988754
No 68
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=57.20 E-value=17 Score=26.39 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
+.|..++|+.+|++..+|..+..-
T Consensus 14 glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 14 GLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 579999999999999999988763
No 69
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=57.19 E-value=23 Score=26.28 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|..++|+.+|++..+|..+..
T Consensus 23 glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 23 GVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHC
Confidence 58999999999999999998865
No 70
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=57.19 E-value=17 Score=32.71 Aligned_cols=36 Identities=3% Similarity=0.062 Sum_probs=30.8
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHHcCCCccCcc
Q 011577 428 GNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQ 463 (482)
Q Consensus 428 ~gr~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD~ 463 (482)
+..+.+.+|||+.|+++..+|+..+.+.+..+.+..
T Consensus 171 l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~~~ 206 (225)
T 3klo_A 171 LGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKN 206 (225)
T ss_dssp HTTTCCHHHHHHHTTCCHHHHHHHHHHHTTTSCCSS
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCC
Confidence 344689999999999999999999999888876643
No 71
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=56.84 E-value=23 Score=26.94 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|.+|+|+.+|++..+|..+..
T Consensus 27 gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 27 GITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHC
Confidence 47999999999999999988875
No 72
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=56.24 E-value=5.8 Score=27.20 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
+.+..|||+.+||+..+|...+..
T Consensus 21 g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 21 GHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp TCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 379999999999999999988654
No 73
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=56.24 E-value=9.2 Score=29.33 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.3
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 432 PDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+|..|||+.+|++..+|-.+++-.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~ 24 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGK 24 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCC
Confidence 478999999999999999999843
No 74
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=56.24 E-value=23 Score=26.86 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=23.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcCCCccCc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (482)
+.|.+|+|+.+||+..+|..+.+- ....+++
T Consensus 24 glsq~~lA~~~gis~~~i~~~e~g-~~~~~~~ 54 (82)
T 3s8q_A 24 GMTQEDLAYKSNLDRTYISGIERN-SRNLTIK 54 (82)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTT-CCCCBHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHCC-CCCCCHH
Confidence 589999999999999999888652 3334443
No 75
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=56.16 E-value=13 Score=31.35 Aligned_cols=29 Identities=10% Similarity=0.190 Sum_probs=25.8
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHcCCC
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFITRMP 458 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~ 458 (482)
.+.+..|||+.||||-.+|..++..++..
T Consensus 33 ~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~ 61 (101)
T 2w7n_A 33 DGKPQATFATSLGLTRGAVSQAVHRVWAA 61 (101)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 36799999999999999999999988754
No 76
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=56.11 E-value=41 Score=27.70 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 383 TYA~~wIRnaI~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.|..+.+.+.+.+.+.+......+.......+..+ ....+...+..|||+.+|++..+|..++..-
T Consensus 6 ~~~l~~~~~~~~~~~~~~~~~~~lt~~~~~vL~~l-------~~~~~~~~t~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3eco_A 6 SYLFRMISHEMKQKADQKLEQFDITNEQGHTLGYL-------YAHQQDGLTQNDIAKALQRTGPTVSNLLRNL 71 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHH-------HHSTTTCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------HhcCCCCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 34455555666666655443334443333333222 2222236799999999999999999988754
No 77
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=55.33 E-value=16 Score=32.30 Aligned_cols=31 Identities=29% Similarity=0.347 Sum_probs=25.0
Q ss_pred HHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 424 YIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 424 L~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+.++.+ ..+..|||+.+|+|..+|...+++-
T Consensus 11 ~L~~~~-~~s~~~la~~lg~s~~tv~~rl~~L 41 (162)
T 3i4p_A 11 ILQEDS-TLAVADLAKKVGLSTTPCWRRIQKM 41 (162)
T ss_dssp HHTTCS-CSCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHCC-CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444 4699999999999999999998754
No 78
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=55.28 E-value=31 Score=25.14 Aligned_cols=24 Identities=0% Similarity=-0.204 Sum_probs=21.3
Q ss_pred CCcHHHHHHHhC--CCHHHHHHHHHH
Q 011577 431 SPDKEDLARRVG--ITVEKLERLIFI 454 (482)
Q Consensus 431 ~pS~eEIAe~LG--IS~etVk~~L~~ 454 (482)
+.|.+|+|+.+| ++..+|..+..-
T Consensus 21 glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 21 GLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp TCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 589999999999 999999988763
No 79
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=54.95 E-value=34 Score=29.04 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=22.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 63 ~~t~~ela~~l~is~~tvs~~l~~L 87 (162)
T 2fa5_A 63 GSSASEVSDRTAMDKVAVSRAVARL 87 (162)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 6899999999999999999988743
No 80
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=54.82 E-value=19 Score=26.22 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=21.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
+.|..++|+.+|++..+|..+..-
T Consensus 16 glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 16 KMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Confidence 579999999999999999998763
No 81
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=54.45 E-value=27 Score=26.64 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=21.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|..++|+.+|++..+|..+..
T Consensus 25 glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 25 GWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Confidence 58999999999999999998876
No 82
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=53.96 E-value=27 Score=26.35 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|..|+|+.+|++..+|..+..
T Consensus 23 glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 23 SLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Confidence 58999999999999999988765
No 83
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=53.91 E-value=11 Score=33.88 Aligned_cols=32 Identities=9% Similarity=0.171 Sum_probs=25.5
Q ss_pred HHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 423 LYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 423 eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.+.+..+ ..+..|||+.+|++..+|...+..-
T Consensus 34 ~~L~~~~-~~s~~eLA~~lglS~~tv~~rl~~L 65 (171)
T 2e1c_A 34 KILQNDG-KAPLREISKITGLAESTIHERIRKL 65 (171)
T ss_dssp HHHHHCT-TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3334445 5899999999999999999988754
No 84
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=53.39 E-value=62 Score=26.38 Aligned_cols=65 Identities=9% Similarity=0.073 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 381 FSTYA~~wIRnaI~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.-.|..+.+.+.+.+.+.+.... .+.......+..+ . ..+ ..+..|||+.+|++..+|...+..-
T Consensus 12 ~l~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~iL~~l-------~-~~~-~~t~~ela~~l~~~~~tvs~~l~~L 76 (140)
T 2nnn_A 12 QIGFILRQANQRYAALFANGIGN-GLTPTQWAALVRL-------G-ETG-PCPQNQLGRLTAMDAATIKGVVERL 76 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSS-CCCHHHHHHHHHH-------H-HHS-SBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHH-------H-HcC-CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34455556666666766665544 5554333333332 1 223 6799999999999999999988753
No 85
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=52.91 E-value=24 Score=30.30 Aligned_cols=29 Identities=7% Similarity=0.186 Sum_probs=24.4
Q ss_pred HhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 426 QEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 426 ~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
...+ ..+..|||+.+|++..+|...+..-
T Consensus 15 ~~~~-~~s~~ela~~lg~s~~tv~~~l~~L 43 (144)
T 2cfx_A 15 KKDS-RLSMRELGRKIKLSPPSVTERVRQL 43 (144)
T ss_dssp HHCS-CCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHcC-CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444 5899999999999999999998754
No 86
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=52.78 E-value=26 Score=28.42 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHcCCCccCc
Q 011577 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (482)
Q Consensus 417 I~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (482)
+...++.+.... +.|.+|+|+.+||+..+|..+.+- +...+++
T Consensus 29 ig~~lr~~R~~~--gltq~elA~~~gis~~~is~iE~G-~~~ps~~ 71 (99)
T 3g5g_A 29 VSFVIKKIRLEK--GMTQEDLAYKSNLDRTYISGIERN-SRNLTIK 71 (99)
T ss_dssp HHHHHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHTT-CSCCBHH
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHCC-CCCCCHH
Confidence 334444444443 589999999999999999888753 3334443
No 87
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=52.72 E-value=23 Score=30.48 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=24.7
Q ss_pred HHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 425 IQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 425 ~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.+..+ ..+..|||+.+|++..+|...++.-
T Consensus 18 L~~~~-~~s~~ela~~lg~s~~tv~~~l~~L 47 (151)
T 2dbb_A 18 LSENS-RLTYRELADILNTTRQRIARRIDKL 47 (151)
T ss_dssp HHHCT-TCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHcC-CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444 5899999999999999999988753
No 88
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=52.48 E-value=48 Score=27.81 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 382 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 382 STYA~~wIRnaI~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
-.|..+.+.+.+.+.+.+......+.......+.. +. ..+...+..|||+.+|++..+|..++..-
T Consensus 13 l~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~-------l~-~~~~~~t~~eLa~~l~i~~~tvs~~l~~L 78 (150)
T 3fm5_A 13 IGFLLSRVGGMVLGAVNKALVPTGLRVRSYSVLVL-------AC-EQAEGVNQRGVAATMGLDPSQIVGLVDEL 78 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHH-------HH-HSTTCCCSHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-------HH-hCCCCcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 34555556666666665543333444332222222 22 23324699999999999999999988754
No 89
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=52.28 E-value=34 Score=28.55 Aligned_cols=66 Identities=6% Similarity=0.063 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhc-CCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 381 FASYAYWWVRQTIRKAIFQHS-RTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 381 FSTYA~~wIRnaI~~~Lrkq~-r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+-.|...++.+.+.+.+.+.- ....+.......+..+ ...+ ..+..|||+.+|++..+|..++..-
T Consensus 12 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l--------~~~~-~~t~~ela~~l~~~~~tvs~~l~~L 78 (148)
T 3nrv_A 12 HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVL--------SSAS-DCSVQKISDILGLDKAAVSRTVKKL 78 (148)
T ss_dssp CHHHHHHHHHHHHHHC----CCGGGTCCHHHHHHHHHH--------HHSS-SBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH--------HcCC-CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 455666666666666665432 2223443333232222 2234 6899999999999999999988743
No 90
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=52.08 E-value=20 Score=25.73 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=20.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|..++|+.+|++..+|..+..
T Consensus 18 g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 18 KIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 47999999999999999988865
No 91
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=52.07 E-value=19 Score=28.92 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCCcHHHHHHHhCCCHH-HHHHHHHH
Q 011577 420 AKRLYIQEGNHSPDKEDLARRVGITVE-KLERLIFI 454 (482)
Q Consensus 420 a~~eL~~e~gr~pS~eEIAe~LGIS~e-tVk~~L~~ 454 (482)
.+-.+....+ ..+..|||+.|||+.. .|+..|..
T Consensus 15 ~IL~~Lk~~g-~~ta~eiA~~Lgit~~~aVr~hL~~ 49 (79)
T 1xmk_A 15 KICDYLFNVS-DSSALNLAKNIGLTKARDINAVLID 49 (79)
T ss_dssp HHHHHHHHTC-CEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHcC-CcCHHHHHHHcCCCcHHHHHHHHHH
Confidence 3334444555 6799999999999999 99998874
No 92
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=51.75 E-value=29 Score=25.71 Aligned_cols=32 Identities=6% Similarity=0.046 Sum_probs=23.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcCCCccCc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (482)
+.|..++|+.+|++..+|..+..--....+++
T Consensus 20 g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~ 51 (78)
T 3b7h_A 20 NLTINRVATLAGLNQSTVNAMFEGRSKRPTIT 51 (78)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHH
Confidence 58999999999999999998876332134443
No 93
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=51.61 E-value=20 Score=27.09 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=19.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|.+++|+.+||+..+|..+..
T Consensus 15 glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 15 SLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Confidence 47899999999999999888765
No 94
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=51.00 E-value=29 Score=26.79 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=21.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|..|+|+.+|++..+|..+.+
T Consensus 31 glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 31 GLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 58999999999999999999876
No 95
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=50.73 E-value=70 Score=27.68 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 382 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 382 STYA~~wIRnaI~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
-.|..+.+.+.+...+.+......+.......+..| . ..+...+..|||+.+|++..+|..++..-
T Consensus 27 l~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~L-------~-~~~~~~t~~eLa~~l~i~~~tvs~~l~~L 92 (166)
T 3deu_A 27 LGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNI-------H-QLPPDQSQIQLAKAIGIEQPSLVRTLDQL 92 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHH-------H-HSCSSEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH-------H-HcCCCCCHHHHHHHHCCCHhhHHHHHHHH
Confidence 445566666677777766555445554333332222 2 22335899999999999999999988753
No 96
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=50.28 E-value=27 Score=30.09 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=24.2
Q ss_pred HhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 426 QEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 426 ~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+..+ ..+..|||+.+|+|..+|...+..-
T Consensus 18 ~~~~-~~s~~ela~~lg~s~~tv~~~l~~L 46 (152)
T 2cg4_A 18 MGNA-RTAYAELAKQFGVSPETIHVRVEKM 46 (152)
T ss_dssp HHCT-TSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHcC-CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444 5899999999999999999988753
No 97
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=49.45 E-value=23 Score=26.15 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=20.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|..++|+.+|++..+|..+..
T Consensus 18 gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 18 KIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 47999999999999999988765
No 98
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=49.41 E-value=22 Score=29.84 Aligned_cols=23 Identities=22% Similarity=0.062 Sum_probs=14.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|.+|+|+.+||+...|..+-.
T Consensus 20 glSq~eLA~~~gis~~~is~iE~ 42 (112)
T 2wus_R 20 RITLLDASLFTNINPSKLKRIEE 42 (112)
T ss_dssp TCCHHHHHHHSSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHC
Confidence 46666666666666666666544
No 99
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=49.07 E-value=15 Score=31.63 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=24.1
Q ss_pred HhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 426 QEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 426 ~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
...+ ..+..|||+.+|++..+|...+..-
T Consensus 17 ~~~~-~~s~~ela~~lg~s~~tv~~~l~~L 45 (150)
T 2w25_A 17 AADG-RATLSELATRAGLSVSAVQSRVRRL 45 (150)
T ss_dssp HHCT-TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHcC-CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444 5899999999999999999988743
No 100
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=48.94 E-value=82 Score=25.83 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 52 ~~t~~~la~~l~~s~~~vs~~l~~L 76 (146)
T 2fbh_A 52 SPTQRELAQSVGVEGPTLARLLDGL 76 (146)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCChhhHHHHHHHH
Confidence 6799999999999999999988743
No 101
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=48.40 E-value=34 Score=28.94 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHcCCCccCc
Q 011577 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (482)
Q Consensus 417 I~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (482)
+...++.+.... +.|.+|+|+.+||+..+|..+.+--...++++
T Consensus 41 lg~~L~~~R~~~--glTQ~eLA~~lGis~~~Is~iE~G~~~~~s~~ 84 (120)
T 2o38_A 41 LAYALNAVIDRA--RLSQAAAAARLGINQPKVSALRNYKLEGFSVE 84 (120)
T ss_dssp HHHHHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHH
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHH
Confidence 333444444443 58999999999999999988765322245554
No 102
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=48.23 E-value=37 Score=28.05 Aligned_cols=36 Identities=8% Similarity=0.023 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHH
Q 011577 416 KVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 416 kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
.+.+.++.+.... +.|.+|+|+.+|++..+|..+-.
T Consensus 36 ~lG~~ir~~R~~~--glTQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 36 EIGDRLKQARLNR--DLTQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp HHHHHHHHHHHHT--TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHcCCCHHHHHHHHC
Confidence 3444444444443 58999999999999999988764
No 103
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=48.16 E-value=46 Score=27.03 Aligned_cols=55 Identities=13% Similarity=0.039 Sum_probs=34.0
Q ss_pred HHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHHH
Q 011577 343 HVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAI 397 (482)
Q Consensus 343 sIAkrY~~~g~d~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRnaI~~~L 397 (482)
.+...........+||.+...+.--.--..|...-|..|..|+..+--+.....|
T Consensus 14 ~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL 68 (113)
T 3oio_A 14 SLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQLL 68 (113)
T ss_dssp HHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 3334444556888999888777665555666655677777777665444444444
No 104
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=48.15 E-value=30 Score=30.23 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=24.3
Q ss_pred HhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 426 QEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 426 ~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+..+ ..+..|||+.+|+|..+|...+..-
T Consensus 20 ~~~~-~~s~~ela~~lg~s~~tv~~~l~~L 48 (162)
T 2p5v_A 20 QENG-RLTNVELSERVALSPSPCLRRLKQL 48 (162)
T ss_dssp HHCT-TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHcC-CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4445 4799999999999999999988753
No 105
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=48.09 E-value=31 Score=29.76 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=24.1
Q ss_pred HhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 426 QEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 426 ~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+..+ ..+..|||+.+|+|..+|...+..-
T Consensus 17 ~~~~-~~s~~ela~~lg~s~~tv~~~l~~L 45 (151)
T 2cyy_A 17 QNDG-KAPLREISKITGLAESTIHERIRKL 45 (151)
T ss_dssp HHCT-TCCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHcC-CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444 5899999999999999999988743
No 106
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=47.79 E-value=33 Score=32.08 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=41.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 405 RLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 405 rlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.+|......+...-+....|..++-...|-+|||+.+|++..+|+.=+...
T Consensus 2 ~i~~~~~~Rl~~y~r~l~~l~~~g~~~iss~~l~~~~~~~~~~iRkdls~~ 52 (211)
T 2dt5_A 2 KVPEAAISRLITYLRILEELEAQGVHRTSSEQLGGLAQVTAFQVRKDLSYF 52 (211)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCcEECHHHHHHHhCCCHHHeechHHHH
Confidence 357666677777777777787777767899999999999999999988754
No 107
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=47.70 E-value=77 Score=26.08 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 384 YA~~wIRnaI~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
|..+.+.+.+...+........++......+..+ . ..+ ..+..|||+.+|++..+|..++..-
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l-------~-~~~-~~t~~~la~~l~~s~~~vs~~l~~L 67 (144)
T 1lj9_A 5 REIGMIARALDSISNIEFKELSLTRGQYLYLVRV-------C-ENP-GIIQEKIAELIKVDRTTAARAIKRL 67 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGTCTTTHHHHHHHH-------H-HST-TEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------H-HCc-CcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 4445555555555555443334444333333322 1 223 5799999999999999999988754
No 108
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=47.66 E-value=28 Score=27.40 Aligned_cols=23 Identities=9% Similarity=0.300 Sum_probs=20.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|..|+|+.+||+..+|..+..
T Consensus 22 glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 22 EKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp SSCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHh
Confidence 58999999999999999988765
No 109
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=47.54 E-value=24 Score=29.16 Aligned_cols=35 Identities=9% Similarity=-0.030 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 421 ~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
...+...+...+++++||+.+|++...+....+..
T Consensus 13 ~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (120)
T 3mkl_A 13 CTVINNNIAHEWTLARIASELLMSPSLLKKKLREE 47 (120)
T ss_dssp HHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHc
Confidence 33344455557899999999999999998887653
No 110
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=47.04 E-value=73 Score=28.18 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=24.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcC--CCccC
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITR--MPLSM 461 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar--~~lSL 461 (482)
.+|.++||..+|++.++|..++..-+ ..+..
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 199 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILER 199 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE
Confidence 46999999999999999999987543 34444
No 111
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=46.90 E-value=31 Score=30.84 Aligned_cols=29 Identities=7% Similarity=0.002 Sum_probs=24.4
Q ss_pred HhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 426 QEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 426 ~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+..+ ..+..|||+.+|+|..+|...+.+-
T Consensus 27 ~~~~-~~s~~eLA~~lglS~~tv~~~l~~L 55 (171)
T 2ia0_A 27 KKDA-RLTISELSEQLKKPESTIHFRIKKL 55 (171)
T ss_dssp HHCT-TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHcC-CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444 5799999999999999999998754
No 112
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=46.62 E-value=34 Score=30.90 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCCcHHHHHHHhCCC-HHHHHHHHH
Q 011577 420 AKRLYIQEGNHSPDKEDLARRVGIT-VEKLERLIF 453 (482)
Q Consensus 420 a~~eL~~e~gr~pS~eEIAe~LGIS-~etVk~~L~ 453 (482)
.++.+..+.+-.||..|||+.+|++ ..+|...+.
T Consensus 14 ~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 14 LIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHH
Confidence 3344444455456999999999999 999988765
No 113
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=46.55 E-value=45 Score=26.88 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=26.8
Q ss_pred cCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHH
Q 011577 349 QGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390 (482)
Q Consensus 349 ~~~g~d~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIR 390 (482)
.......+||.....+.--.--..|...-|..|..|+..+-.
T Consensus 18 ~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl 59 (108)
T 3oou_A 18 FSEGMSLKTLGNDFHINAVYLGQLFQKEMGEHFTDYLNRYRV 59 (108)
T ss_dssp TTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 345688888888876665555555655556667777654333
No 114
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=46.43 E-value=41 Score=26.08 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=23.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcCCCccCc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (482)
+.|.+|+|+.+|++..+|..+..- ....+++
T Consensus 27 gltq~elA~~~gis~~~is~~E~G-~~~p~~~ 57 (86)
T 3eus_A 27 GLTQADLAERLDKPQSFVAKVETR-ERRLDVI 57 (86)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHTT-SSCCBHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHCC-CCCCCHH
Confidence 589999999999999999988653 3334444
No 115
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=46.22 E-value=48 Score=27.35 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 47 ~~~~~~la~~l~~s~~tvs~~l~~L 71 (145)
T 2a61_A 47 PKRPGELSVLLGVAKSTVTGLVKRL 71 (145)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHH
Confidence 5899999999999999999988754
No 116
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=46.14 E-value=41 Score=24.32 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=23.0
Q ss_pred CCCcHHHHHHHh-----CCCHHHHHHHHHHc
Q 011577 430 HSPDKEDLARRV-----GITVEKLERLIFIT 455 (482)
Q Consensus 430 r~pS~eEIAe~L-----GIS~etVk~~L~~a 455 (482)
..+|.+||++.| +++..+|..-|...
T Consensus 18 ~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp CCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 378999999999 99999999998843
No 117
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=45.70 E-value=33 Score=29.30 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=23.0
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+-|+..+||+.+|++..+|++++..-
T Consensus 37 ~LPser~La~~~gVSr~tVReAl~~L 62 (134)
T 4ham_A 37 KILSIREFASRIGVNPNTVSKAYQEL 62 (134)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHCCCHHHHHHHHHHH
Confidence 45799999999999999999998743
No 118
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=45.63 E-value=48 Score=27.43 Aligned_cols=25 Identities=8% Similarity=0.058 Sum_probs=22.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
-|+..|||+.+|++..+|++++..-
T Consensus 33 lPs~~~La~~~~vSr~tvr~al~~L 57 (113)
T 3tqn_A 33 IPSIRKISTEYQINPLTVSKAYQSL 57 (113)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4699999999999999999998743
No 119
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=45.26 E-value=42 Score=28.17 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=24.5
Q ss_pred HHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 424 YIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 424 L~~e~gr~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
+....+ .++..|||+.+|++..+|..++..
T Consensus 16 l~~~~~-~~~~~ela~~l~vs~~tvs~~l~~ 45 (142)
T 1on2_A 16 LIEEKG-YARVSDIAEALAVHPSSVTKMVQK 45 (142)
T ss_dssp HHHHHS-SCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHhhcC-CCCHHHHHHHhCCCHHHHHHHHHH
Confidence 333344 689999999999999999998874
No 120
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=45.25 E-value=26 Score=24.99 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=20.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|..++|+.+|++..+|..+..
T Consensus 14 g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 14 KISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 57999999999999999998876
No 121
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=45.23 E-value=53 Score=26.39 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=29.4
Q ss_pred CCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHHH
Q 011577 350 GRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAI 397 (482)
Q Consensus 350 ~~g~d~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRnaI~~~L 397 (482)
......+||.+...+.--.--..|...-|..|..|+..+-.+.....|
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL 63 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLL 63 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 445888888888766655555556555566777776654443333333
No 122
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=45.13 E-value=47 Score=28.21 Aligned_cols=25 Identities=12% Similarity=-0.101 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 66 ~~t~~ela~~l~is~~tvs~~l~~L 90 (162)
T 3cjn_A 66 GLPIGTLGIFAVVEQSTLSRALDGL 90 (162)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCChhHHHHHHHHH
Confidence 6799999999999999999998754
No 123
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=44.80 E-value=52 Score=28.10 Aligned_cols=66 Identities=20% Similarity=0.183 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 381 FSTYA~~wIRnaI~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.-.|..+.+.+.+.+.+.+......+.......+..| ...+ ..+..|||+.+|++..+|..++..-
T Consensus 19 ~l~~~l~~~~~~~~~~~~~~l~~~glt~~q~~iL~~l--------~~~~-~~t~~eLa~~l~~~~~tvs~~l~~L 84 (162)
T 3k0l_A 19 RLSYMIARVDRIISKYLTEHLSALEISLPQFTALSVL--------AAKP-NLSNAKLAERSFIKPQSANKILQDL 84 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH--------HHCT-TCCHHHHHHHHTSCGGGHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH--------HHCC-CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4456666666666666655433334444333333322 1233 6899999999999999999888753
No 124
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=44.64 E-value=44 Score=28.57 Aligned_cols=25 Identities=12% Similarity=-0.096 Sum_probs=22.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 67 ~~t~~eLa~~l~~~~~~vs~~l~~L 91 (161)
T 3e6m_A 67 ELTVGQLATLGVMEQSTTSRTVDQL 91 (161)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 6799999999999999999988753
No 125
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=44.31 E-value=46 Score=27.73 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 383 TYA~~wIRnaI~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.|..+++.+.+.+.+.+......+.......+..+ . ..+ ..+..|||+.+|++..+|..++..-
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~glt~~q~~vL~~l-------~-~~~-~~t~~eLa~~l~~~~~tvs~~l~~L 74 (140)
T 3hsr_A 11 CFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAI-------E-NDE-KLNIKKLGERVFLDSGTLTPLLKKL 74 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHS-------C-TTC-EEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------H-HcC-CcCHHHHHHHHCCChhhHHHHHHHH
Confidence 44555555556665554443334443322222222 1 122 5799999999999999999988754
No 126
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=44.27 E-value=28 Score=30.26 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=19.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|+.|||+.+|+|..+|...-+
T Consensus 75 G~syreIA~~~g~S~aTIsRv~r 97 (119)
T 3kor_A 75 GYTYATIEQESGASTATISRVKR 97 (119)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Confidence 47999999999999999977644
No 127
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=44.09 E-value=39 Score=26.23 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=21.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
..|.+|+|+.+||+..+|..+..
T Consensus 26 glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 26 GLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 58999999999999999988876
No 128
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=43.83 E-value=36 Score=31.98 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=40.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 405 RLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 405 rlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.+|......+...-+....|..++-...|-+|||+.+|++..+|+.=+...
T Consensus 7 ~i~~~~~~Rl~~Y~r~l~~l~~~g~~~iss~~l~~~~~~~~~~iRkdls~f 57 (215)
T 2vt3_A 7 KIPQATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYF 57 (215)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHCCCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCcEECHHHHHHHhCCCHHHeechHHHH
Confidence 568777777777777888888877777899999999999999999987754
No 129
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=43.60 E-value=45 Score=27.23 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=22.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 47 ~~~~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3bja_A 47 KVSMSKLIENMGCVPSNMTTMIQRM 71 (139)
T ss_dssp SEEHHHHHHHCSSCCTTHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhHHHHHHHHH
Confidence 5799999999999999999888753
No 130
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=43.52 E-value=25 Score=29.52 Aligned_cols=39 Identities=13% Similarity=0.092 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 417 I~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+.++...+...+...++.++||+.+|++...+..+.+..
T Consensus 13 i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 13 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444445555667899999999999999998877643
No 131
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=43.17 E-value=20 Score=31.55 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=25.9
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHcCCCcc
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFITRMPLS 460 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~lS 460 (482)
.+.+.+|||+.||++..+|+..+.+.+..+-
T Consensus 156 ~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 156 RGLMNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCcHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 3579999999999999999988887765543
No 132
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=43.12 E-value=21 Score=30.58 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=22.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|...+..-
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L 41 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKL 41 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5799999999999999999988753
No 133
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=43.09 E-value=63 Score=27.16 Aligned_cols=25 Identities=8% Similarity=0.214 Sum_probs=22.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 55 ~~~~~eLa~~l~~~~~~vs~~l~~L 79 (149)
T 4hbl_A 55 PQTLNSIGRHLDLSSNTLTPMLKRL 79 (149)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 6799999999999999999887743
No 134
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=42.97 E-value=14 Score=32.89 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=26.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcCCCccC
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITRMPLSM 461 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSL 461 (482)
+.+.+|||+.|+++..+|+..+.+.+..+-.
T Consensus 169 g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~ 199 (215)
T 1a04_A 169 GLPNKMIARRLDITESTVKVHVKHMLKKMKL 199 (215)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 5699999999999999999998877655543
No 135
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=42.86 E-value=31 Score=26.38 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=24.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcCCCccCc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (482)
+.|.+|+|+.+||+..+|..+..--+...+++
T Consensus 23 gltq~elA~~~gis~~~is~~E~G~~~~p~~~ 54 (78)
T 3qq6_A 23 GYSLSELAEKAGVAKSYLSSIERNLQTNPSIQ 54 (78)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTTSCCCCBHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHH
Confidence 58999999999999999998876413344443
No 136
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=42.29 E-value=48 Score=29.82 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=23.1
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 428 GNHSPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 428 ~gr~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
.++..|..|||+.+|+|..+|...+..
T Consensus 33 ~~~~~s~~eLa~~l~vS~~Ti~rdi~~ 59 (187)
T 1j5y_A 33 SKEPVSGAQLAEELSVSRQVIVQDIAY 59 (187)
T ss_dssp CSSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 344689999999999999999988764
No 137
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=42.27 E-value=44 Score=27.52 Aligned_cols=54 Identities=13% Similarity=0.029 Sum_probs=33.5
Q ss_pred HHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHHH
Q 011577 343 HVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAI 397 (482)
Q Consensus 343 sIAkrY~~~g~d~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRnaI~~~L 397 (482)
.+...........+||.+...+.--.--..|... |..|..|+..+-.+.....|
T Consensus 14 ~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~-G~s~~~~~~~~Rl~~A~~lL 67 (120)
T 3mkl_A 14 TVINNNIAHEWTLARIASELLMSPSLLKKKLREE-ETSYSQLLTECRMQRALQLI 67 (120)
T ss_dssp HHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHH
Confidence 3333334456788888888766665555566655 77787777665444444444
No 138
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=42.24 E-value=18 Score=28.28 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=22.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..|++|.|+.|||+..++..+.+..
T Consensus 16 ~LTi~EaAeylgIg~~~l~~L~~~~ 40 (70)
T 1y6u_A 16 TLTIEEASKYFRIGENKLRRLAEEN 40 (70)
T ss_dssp EEEHHHHHHHTCSCHHHHHHHHHHC
T ss_pred eeCHHHHHHHHCcCHHHHHHHHHcC
Confidence 4599999999999999999998753
No 139
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=42.13 E-value=46 Score=27.21 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=18.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|.+|+|+.+||+..+|..+..
T Consensus 34 gltq~elA~~~gis~~~is~~E~ 56 (114)
T 3vk0_A 34 GWSQEELARQCGLDRTYVSAVER 56 (114)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 47888899999998888887754
No 140
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=42.08 E-value=53 Score=27.88 Aligned_cols=34 Identities=12% Similarity=0.251 Sum_probs=27.1
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHc--CCCccCcc
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFIT--RMPLSMQQ 463 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~a--r~~lSLD~ 463 (482)
..||..+||+.+|++..+|..++..- ...+....
T Consensus 50 ~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 50 LFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp SSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 35899999999999999999998843 44555543
No 141
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=41.69 E-value=34 Score=28.17 Aligned_cols=23 Identities=9% Similarity=0.179 Sum_probs=21.1
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHH
Q 011577 432 PDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
++..+||+.+|+|..+|...+..
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 89999999999999999998863
No 142
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=41.61 E-value=43 Score=28.14 Aligned_cols=27 Identities=11% Similarity=0.289 Sum_probs=22.9
Q ss_pred hcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 427 EGNHSPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 427 e~gr~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
..+ ..+..|||+.+|++..+|...++.
T Consensus 15 ~~~-~~~~~ela~~lg~s~~tv~~~l~~ 41 (141)
T 1i1g_A 15 KDA-RTPFTEIAKKLGISETAVRKRVKA 41 (141)
T ss_dssp HCT-TCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HcC-CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344 469999999999999999998774
No 143
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=41.48 E-value=92 Score=25.58 Aligned_cols=25 Identities=16% Similarity=-0.000 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 50 ~~~~~ela~~l~~s~~tvs~~l~~L 74 (146)
T 2gxg_A 50 PKTMAYLANRYFVTQSAITASVDKL 74 (146)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCchhHHHHHHHH
Confidence 6799999999999999999988754
No 144
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=41.48 E-value=52 Score=27.77 Aligned_cols=26 Identities=8% Similarity=0.198 Sum_probs=22.9
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+-||..|||+.+|++..+|+.++..-
T Consensus 36 ~Lps~~~La~~~~vSr~tvr~Al~~L 61 (125)
T 3neu_A 36 KLPSVREMGVKLAVNPNTVSRAYQEL 61 (125)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45799999999999999999998743
No 145
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=41.36 E-value=88 Score=27.41 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..|.++||..+|++.++|..++..-
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L 193 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYF 193 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 4699999999999999999998754
No 146
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=41.16 E-value=60 Score=27.55 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 381 FSTYA~~wIRnaI~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.-.|....+.+.+.+.+.+......+.......+..+ . ..+ ..+..|||+.+|++..+|..++..-
T Consensus 23 ~l~~~l~~~~~~~~~~~~~~l~~~~lt~~q~~vL~~l-------~-~~~-~~t~~eLa~~l~~~~~tvs~~l~~L 88 (159)
T 3s2w_A 23 FIGKAISYLYRYGQIYIGKKIEPYGIGSGQFPFLMRL-------Y-RED-GINQESLSDYLKIDKGTTARAIQKL 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCCTTTHHHHHHH-------H-HSC-SEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------H-HCC-CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455566666666666655543334443333333332 1 123 6799999999999999999988753
No 147
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=40.73 E-value=36 Score=28.75 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011577 405 RLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 405 rlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etV 448 (482)
+.+......-.-+..+...+...+....|.++||+..||+.+++
T Consensus 2 ~m~k~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 45 (194)
T 2g7s_A 2 SMKNPQSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASI 45 (194)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHH
T ss_pred CCCchhhhHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHH
No 148
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=40.64 E-value=38 Score=26.52 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=22.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.++..|||+.+|++..+|...+..-
T Consensus 36 ~~t~~ela~~l~is~~tv~~~l~~L 60 (109)
T 2d1h_A 36 PITSEELADIFKLSKTTVENSLKKL 60 (109)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6899999999999999999988744
No 149
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=40.64 E-value=62 Score=27.07 Aligned_cols=25 Identities=20% Similarity=0.030 Sum_probs=22.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 55 ~~t~~eLa~~l~~~~~tvs~~l~~L 79 (154)
T 2qww_A 55 GISVADLTKRLIITGSSAAANVDGL 79 (154)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5799999999999999999988753
No 150
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=40.54 E-value=34 Score=27.75 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=23.4
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 429 NHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
|..++..|||+.+|++..+|...+..-
T Consensus 31 g~~~s~~eLa~~lgvs~~tV~~~L~~L 57 (110)
T 1q1h_A 31 GTEMTDEEIANQLNIKVNDVRKKLNLL 57 (110)
T ss_dssp CSCBCHHHHHHTTTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 335899999999999999999998753
No 151
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=40.48 E-value=1.2e+02 Score=24.89 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 50 ~~~~~~la~~l~i~~~~vs~~l~~L 74 (147)
T 2hr3_A 50 DVTPSELAAAERMRSSNLAALLREL 74 (147)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCChhhHHHHHHHH
Confidence 6899999999999999999988753
No 152
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=40.36 E-value=19 Score=32.54 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=26.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcCCCccCc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (482)
+.|.+|||+.|+++..+|+..+...+..+...
T Consensus 164 g~s~~eIa~~l~is~~TV~~hi~~l~~KL~~~ 195 (225)
T 3c3w_A 164 GLTNKQIADRMFLAEKTVKNYVSRLLAKLGME 195 (225)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Confidence 47999999999999999999988776655443
No 153
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=40.16 E-value=29 Score=25.73 Aligned_cols=31 Identities=6% Similarity=-0.001 Sum_probs=24.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcCCCccCc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (482)
+.|..|+|+.+||+..+|..+..-- ...+++
T Consensus 21 glsq~~lA~~~gis~~~is~~e~g~-~~~~~~ 51 (73)
T 3omt_A 21 GKTNLWLTETLDKNKTTVSKWCTND-VQPSLE 51 (73)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHTTS-SCCCHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcCC-CCCCHH
Confidence 5799999999999999999987632 334443
No 154
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=39.86 E-value=38 Score=28.14 Aligned_cols=66 Identities=8% Similarity=0.064 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 381 FSTYA~~wIRnaI~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+-.|..+.+.+.+...+.+......++......+..+ .. .+ ..+..|||+.+|++..+|..++..-
T Consensus 13 ~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l-------~~-~~-~~~~~~la~~l~~~~~tvs~~l~~L 78 (147)
T 1z91_A 13 QLSFLLYASSREMTKQYKPLLDKLNITYPQYLALLLL-------WE-HE-TLTVKKMGEQLYLDSGTLTPMLKRM 78 (147)
T ss_dssp CHHHHHHHHHHHHHTTSHHHHTTTCCCHHHHHHHHHH-------HH-HS-EEEHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------HH-CC-CCCHHHHHHHHCCCcCcHHHHHHHH
Confidence 3445555555555555544433334443333333322 11 23 5799999999999999999888743
No 155
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=39.81 E-value=65 Score=26.82 Aligned_cols=25 Identities=8% Similarity=0.175 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 54 ~~t~~ela~~l~~~~~~vs~~l~~L 78 (152)
T 3bj6_A 54 GATAPQLGAALQMKRQYISRILQEV 78 (152)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 6799999999999999999988754
No 156
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=39.71 E-value=77 Score=26.56 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=22.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 57 ~~t~~ela~~l~i~~~tvs~~l~~L 81 (155)
T 3cdh_A 57 AMMITRLAKLSLMEQSRMTRIVDQM 81 (155)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5799999999999999999988754
No 157
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=39.36 E-value=55 Score=27.40 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=22.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 51 ~~t~~ela~~l~~s~~tvs~~l~~L 75 (155)
T 1s3j_A 51 SLKVSEIAERMEVKPSAVTLMADRL 75 (155)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5799999999999999999988754
No 158
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=39.27 E-value=46 Score=25.94 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=17.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|..++|+.+|++..+|..+..
T Consensus 21 gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 21 NVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Confidence 36777778888887777777765
No 159
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=39.22 E-value=21 Score=28.64 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.7
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 432 PDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.|..+||..||++...|...|..-
T Consensus 30 ~Ta~~IAkkLg~sK~~vNr~LY~L 53 (75)
T 1sfu_A 30 TTAISLSNRLKINKKKINQQLYKL 53 (75)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHH
Confidence 689999999999999999998754
No 160
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=39.14 E-value=49 Score=28.49 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=27.2
Q ss_pred HHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 414 LSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 414 l~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
..+|-++..++ ...+....|.++||+..||+.+++-.
T Consensus 14 r~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY~ 51 (192)
T 2fq4_A 14 QKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYK 51 (192)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHH
Confidence 34455555554 45555688999999999999999854
No 161
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=38.67 E-value=64 Score=27.49 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..+||+.+|++..+|...+...
T Consensus 54 ~~~~~~la~~l~vs~~tvs~~l~~L 78 (155)
T 2h09_A 54 EARQVDMAARLGVSQPTVAKMLKRL 78 (155)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCcCHHHHHHHHHHH
Confidence 6799999999999999999998754
No 162
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=38.59 E-value=37 Score=28.91 Aligned_cols=35 Identities=14% Similarity=0.409 Sum_probs=25.6
Q ss_pred HHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 416 KVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 416 kI~ka~~e-L~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
+|-++..+ +...+-...|.++||+..||+.+++-.
T Consensus 6 ~Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskgtlY~ 41 (179)
T 2eh3_A 6 RILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFYF 41 (179)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCCcHHHHH
Confidence 34444444 455555688999999999999999854
No 163
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=38.51 E-value=54 Score=27.27 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=22.9
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..++..|||+.+|++..+|..++..-
T Consensus 30 ~~~s~~ela~~l~is~~tv~~~l~~L 55 (139)
T 2x4h_A 30 EGAKINRIAKDLKIAPSSVFEEVSHL 55 (139)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCChHHHHHHHHHH
Confidence 36899999999999999999988743
No 164
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=38.48 E-value=47 Score=28.80 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 414 LSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 414 l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
..+|-++..++..+.|-..|.++||+..||+.+++-.
T Consensus 15 r~~Il~aA~~lf~~~G~~~t~~~IA~~agvs~~tlY~ 51 (196)
T 2qwt_A 15 RARVLEVAYDTFAAEGLGVPMDEIARRAGVGAGTVYR 51 (196)
T ss_dssp HHHHHHHHHHHHHHTCTTSCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHH
Confidence 3455555566555544489999999999999999865
No 165
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=38.25 E-value=38 Score=31.95 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=41.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 405 RLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 405 rlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.+|......+...-+....|..++-...|-+|||+.+|++..+|++=+...
T Consensus 6 ~ip~~ti~RL~~Y~r~l~~l~~~g~~~isS~ela~~~gv~~~qiRkDls~f 56 (212)
T 3keo_A 6 SIPKATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYF 56 (212)
T ss_dssp CCCHHHHTTHHHHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHCCCeEECHHHHHHHHCCCHHHHHHHHHHH
Confidence 567777777777777777887777777899999999999999999987643
No 166
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=38.01 E-value=38 Score=24.95 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=21.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|..++|+.+|++..+|..+..
T Consensus 23 g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 23 QRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 58999999999999999998876
No 167
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=38.00 E-value=66 Score=26.12 Aligned_cols=35 Identities=9% Similarity=0.205 Sum_probs=28.0
Q ss_pred HHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHcC
Q 011577 422 RLYIQEGNHSPDKEDLARRVGITVEKLERLIFITR 456 (482)
Q Consensus 422 ~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~ar 456 (482)
.+...+.|......+||+.+|++..+|..++..-.
T Consensus 25 Le~LkeaG~PlkageIae~~GvdKKeVdKaik~LK 59 (80)
T 2lnb_A 25 LQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMK 59 (80)
T ss_dssp HHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444556677999999999999999999988654
No 168
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=37.76 E-value=40 Score=27.15 Aligned_cols=25 Identities=4% Similarity=0.053 Sum_probs=22.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+.+..+||+.+|++..+|...+...
T Consensus 33 g~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 33 GIRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4699999999999999999998764
No 169
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=37.74 E-value=38 Score=29.04 Aligned_cols=35 Identities=23% Similarity=0.472 Sum_probs=25.2
Q ss_pred HHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 416 KVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 416 kI~ka~~e-L~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
+|-++..+ +...+....|.++||+..||+.+++-.
T Consensus 7 ~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~Y~ 42 (190)
T 3vpr_A 7 RILEEAAKLFTEKGYEATSVQDLAQALGLSKAALYH 42 (190)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHH
Confidence 33344444 455555678999999999999999844
No 170
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=37.40 E-value=1.2e+02 Score=26.79 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..|.++||..+|++.++|-.++..-
T Consensus 178 ~~t~~~lA~~lg~sr~tvsR~l~~l 202 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRL 202 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 3589999999999999999998754
No 171
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=37.35 E-value=48 Score=26.87 Aligned_cols=23 Identities=4% Similarity=0.141 Sum_probs=18.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|.+++|+.+|++..+|..+..
T Consensus 22 glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 22 GLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 46888888888888888888766
No 172
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=37.27 E-value=23 Score=29.24 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=22.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.|+..|||+.+|++..+|+..+..-
T Consensus 43 lps~~eLa~~lgVSr~tVr~al~~L 67 (102)
T 2b0l_A 43 LLVASKIADRVGITRSVIVNALRKL 67 (102)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4699999999999999999998753
No 173
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=37.06 E-value=63 Score=24.56 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=19.1
Q ss_pred cHHHHHHHhCCCHHHHHHHHHH
Q 011577 433 DKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 433 S~eEIAe~LGIS~etVk~~L~~ 454 (482)
+..|+|+.+||+..+|..+.+-
T Consensus 29 sq~~lA~~~gis~~~is~~E~g 50 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETG 50 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 8899999999999999887763
No 174
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=36.89 E-value=1.6e+02 Score=25.05 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=23.2
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 428 GNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 428 ~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.+...+..|||+.+|++..+|-.++..-
T Consensus 43 ~~~~~~~~eLa~~l~~~~~tvs~~v~~L 70 (151)
T 4aik_A 43 LPPEQSQIQLAKAIGIEQPSLVRTLDQL 70 (151)
T ss_dssp SCTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 3446688999999999999999988753
No 175
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=36.79 E-value=40 Score=28.90 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=25.7
Q ss_pred HHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 416 KVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 416 kI~ka~~e-L~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
+|-++..+ +...+....|.++||+..||+.+++-.
T Consensus 11 ~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 46 (192)
T 2zcm_A 11 KIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYY 46 (192)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHH
Confidence 34444444 455555688999999999999999854
No 176
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=36.72 E-value=43 Score=27.46 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=22.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 50 ~~t~~ela~~l~~s~~~vs~~l~~L 74 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTGVLARL 74 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHH
Confidence 5799999999999999999988753
No 177
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=36.66 E-value=57 Score=27.65 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011577 406 LPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 406 lP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etV 448 (482)
.++.....-.-+..+...+...+....|.++||+..||+.+++
T Consensus 2 m~~~~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~ 44 (199)
T 3qbm_A 2 MRKGQETRERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGI 44 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHH
No 178
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=36.46 E-value=43 Score=26.82 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=24.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcCCCccCcc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQQ 463 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD~ 463 (482)
+.|..|+|+.+||+..+|..+..- +. ++++.
T Consensus 37 glTq~eLA~~~GiS~~tis~iE~G-~~-~s~~~ 67 (88)
T 3t76_A 37 DMKKGELREAVGVSKSTFAKLGKN-EN-VSLTV 67 (88)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTT-CC-CCHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC-CC-cCHHH
Confidence 689999999999999999988763 22 45543
No 179
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=36.36 E-value=45 Score=25.25 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=21.0
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHcC
Q 011577 433 DKEDLARRVGITVEKLERLIFITR 456 (482)
Q Consensus 433 S~eEIAe~LGIS~etVk~~L~~ar 456 (482)
|..++|+.+||+..+|..+..--+
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHTC
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCC
Confidence 899999999999999999887543
No 180
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=36.19 E-value=75 Score=26.91 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=22.7
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+-|+..+||+.+|+|..+|+.++..-
T Consensus 34 ~lPse~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3by6_A 34 QLPSVRETALQEKINPNTVAKAYKEL 59 (126)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34799999999999999999998753
No 181
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=35.92 E-value=43 Score=28.81 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 415 SKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 415 ~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
.+|-++..++..+.|-..|..+||+..||+.+++-.
T Consensus 18 ~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tlY~ 53 (194)
T 2q24_A 18 DKILAAAVRVFSEEGLDAHLERIAREAGVGSGTLYR 53 (194)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCcCCCHHHHHHHhCCChHHHHH
Confidence 445555555544443349999999999999999864
No 182
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=35.84 E-value=67 Score=29.39 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=24.2
Q ss_pred HHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHH
Q 011577 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 421 ~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
++.|..+. +.|.+|+|+.|||+..++...-.
T Consensus 95 lk~lR~~~--glTQ~elA~~LGvsr~tis~yE~ 125 (170)
T 2auw_A 95 FGDWMHRN--NLSLTTAAEALGISRRMVSYYRT 125 (170)
T ss_dssp HHHHHHHT--TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHc--CCCHHHHHHHhCCCHHHHHHHHc
Confidence 34444443 58999999999999999988765
No 183
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=35.81 E-value=67 Score=28.00 Aligned_cols=36 Identities=17% Similarity=0.447 Sum_probs=26.3
Q ss_pred HHHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 415 SKVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 415 ~kI~ka~~e-L~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
.+|-++..+ +...+....|.++||+..||+.+++-.
T Consensus 15 ~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~tlY~ 51 (211)
T 3bhq_A 15 REIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYK 51 (211)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHH
Confidence 344444444 455555678999999999999999854
No 184
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=35.77 E-value=69 Score=26.27 Aligned_cols=25 Identities=8% Similarity=0.037 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 41 ~~t~~ela~~l~~~~stvs~~l~~L 65 (152)
T 1ku9_A 41 PLTISDIMEELKISKGNVSMSLKKL 65 (152)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6899999999999999999988753
No 185
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=35.56 E-value=22 Score=26.87 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=21.4
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHHcC
Q 011577 432 PDKEDLARRVGITVEKLERLIFITR 456 (482)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~ar 456 (482)
++..|+|+.|||+..++........
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTTC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 4789999999999999999876543
No 186
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=35.52 E-value=43 Score=28.61 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 413 LLSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 413 ~l~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
...+|-++..++ ...+....|.++||+..||+.+++-.
T Consensus 12 ~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~ 50 (203)
T 3b81_A 12 KRTELANKIWDIFIANGYENTTLAFIINKLGISKGALYH 50 (203)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCchhHHH
Confidence 344455555554 45555678999999999999998843
No 187
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=35.20 E-value=52 Score=27.49 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=23.4
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 429 NHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+..++..|||+.+|++...|.+++..-
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L 50 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPL 50 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 446799999999999999999998743
No 188
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=34.94 E-value=78 Score=29.63 Aligned_cols=78 Identities=17% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhCCCCcHHHHHHHhcCCHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHH
Q 011577 287 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366 (482)
Q Consensus 287 ~le~~~~~l~~~~g~~pt~~ewA~a~gmdd~eLi~~l~~Gd~Are~LI~snlrLV~sIAkrY~~~g~d~EDLIQEG~IGL 366 (482)
.+.++..-+++.+..+++..++|+.+|++...|.+.
T Consensus 4 ~~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~-------------------------------------------- 39 (292)
T 1d5y_A 4 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRM-------------------------------------------- 39 (292)
T ss_dssp HHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHH--------------------------------------------
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHH--------------------------------------------
Q ss_pred HHhHHhhCCCCCCchhhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCC
Q 011577 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGIT 444 (482)
Q Consensus 367 irAiekFDp~kG~rFSTYA~~wIRnaI~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS 444 (482)
|...-|..|..|+...-.+.....|+.. +.++.|||..+|.+
T Consensus 40 ------f~~~~g~s~~~~~~~~Rl~~a~~~L~~~------------------------------~~~i~~ia~~~Gf~ 81 (292)
T 1d5y_A 40 ------FKDVTGHAIGAYIRARRLSKSAVALRLT------------------------------ARPILDIALQYRFD 81 (292)
T ss_dssp ------HHHHHSSCHHHHHHHHHHHHHHHHHHHC------------------------------CCCHHHHHHHTTCS
T ss_pred ------HHHHHCcCHHHHHHHHHHHHHHHHHhcC------------------------------CCCHHHHHHHcCCC
No 189
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=34.92 E-value=36 Score=25.70 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|.+|+|+.+||+..+|..+..
T Consensus 24 gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 24 SLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp TCCHHHHHHHHCSCTTHHHHHHT
T ss_pred CCCHHHHHHHhCcCHHHHHHHHc
Confidence 58999999999999999988865
No 190
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=34.82 E-value=17 Score=27.97 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=20.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
.+|+.+||+.+|++..+|-.+++
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 47999999999999999998876
No 191
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=34.67 E-value=69 Score=26.43 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=20.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|.+|+|+.+||+..+|..+..
T Consensus 25 glsq~~lA~~~gis~~~is~~E~ 47 (126)
T 3ivp_A 25 GLTREQVGAMIEIDPRYLTNIEN 47 (126)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHC
Confidence 57999999999999999988765
No 192
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=34.64 E-value=63 Score=28.81 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=24.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcC--CCccC
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITR--MPLSM 461 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar--~~lSL 461 (482)
..|.++||..+|++.++|-.++..-+ ..+..
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~ 207 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEV 207 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe
Confidence 35999999999999999999987543 34444
No 193
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=34.42 E-value=46 Score=28.83 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=26.3
Q ss_pred HHHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 415 SKVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 415 ~kI~ka~~e-L~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
.+|-++..+ +..++-...|.++||+..||+.+++-.
T Consensus 13 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~ 49 (194)
T 2nx4_A 13 RSITAAAWRLIAARGIEAANMRDIATEAGYTNGALSH 49 (194)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHH
Confidence 344444444 455555688999999999999998854
No 194
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=34.22 E-value=47 Score=27.46 Aligned_cols=66 Identities=5% Similarity=0.117 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHHHH-HHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 381 FASYAYWWVRQTIRKAI-FQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 381 FSTYA~~wIRnaI~~~L-rkq~r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.-.|....+.+.+.+.+ .+......++......+.. +. ..+ ..+..|||+.+|++..+|...+..-
T Consensus 9 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~-------l~-~~~-~~~~~ela~~l~~~~~tvs~~l~~L 75 (142)
T 2bv6_A 9 QLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTI-------LW-DES-PVNVKKVVTELALDTGTVSPLLKRM 75 (142)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHTCCHHHHHHHHH-------HH-HSS-EEEHHHHHHHTTCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHH-------HH-HcC-CcCHHHHHHHHCCChhhHHHHHHHH
Confidence 44566666666666666 4332222233322222222 21 233 5799999999999999999988754
No 195
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=33.87 E-value=2e+02 Score=25.34 Aligned_cols=24 Identities=8% Similarity=0.162 Sum_probs=21.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
+.+..+||+.||++..+|..++..
T Consensus 158 G~s~~~Ia~~l~is~~tv~r~l~~ 181 (183)
T 1gdt_A 158 GLGASHISKTMNIARSTVYKVINE 181 (183)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhh
Confidence 469999999999999999988763
No 196
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=33.81 E-value=48 Score=28.57 Aligned_cols=32 Identities=9% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011577 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 417 I~ka~~eL~~e~gr~pS~eEIAe~LGIS~etV 448 (482)
+..+...+...+....|.++||+..||+.+++
T Consensus 20 l~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~ 51 (212)
T 3knw_A 20 LDSGFHLVLRKGFVGVGLQEILKTSGVPKGSF 51 (212)
T ss_dssp HHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHcCCccCCHHHHHHHhCCChHHH
No 197
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=33.78 E-value=27 Score=30.42 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=28.8
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHHc--CCCccCcc
Q 011577 428 GNHSPDKEDLARRVGITVEKLERLIFIT--RMPLSMQQ 463 (482)
Q Consensus 428 ~gr~pS~eEIAe~LGIS~etVk~~L~~a--r~~lSLD~ 463 (482)
....||.++||+.+|+++.+|..++..- +..+.+..
T Consensus 48 g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~ 85 (135)
T 2v79_A 48 GSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEE 85 (135)
T ss_dssp TCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEE
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3356899999999999999999998743 45677744
No 198
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=33.70 E-value=46 Score=28.94 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=26.0
Q ss_pred HHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHH
Q 011577 415 SKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLE 449 (482)
Q Consensus 415 ~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk 449 (482)
.+|-++..++ ...+....|.++||+..||+.+++-
T Consensus 15 ~~Il~aA~~lf~~~Gy~~ts~~~IA~~agvs~gtlY 50 (205)
T 1rkt_A 15 AEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVY 50 (205)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHHCCCcchhh
Confidence 4455555554 4555568899999999999999984
No 199
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=33.64 E-value=84 Score=27.19 Aligned_cols=51 Identities=16% Similarity=0.082 Sum_probs=34.1
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHcC
Q 011577 402 RTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITR 456 (482)
Q Consensus 402 r~irlP~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~ar 456 (482)
..+.+|.........-+ .++..++. +.++.|+|...|+|+.+|..++...+
T Consensus 67 ~~iYIPk~~~~~~~~Rn---~~I~~~f~-G~n~~eLArkYgLSer~I~~Ii~~~r 117 (129)
T 1rr7_A 67 GQVYIPRGQALDSLIRD---LRIWNDFN-GRNVSELTTRYGVTFNTVYKAIRRMR 117 (129)
T ss_dssp SCCCCCCSHHHHHHHHH---HHHHHHCC-SSCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred eeEEeeCCchHHHHHHH---HHHHHHhC-CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35667765443222111 22334454 67999999999999999999997553
No 200
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=33.64 E-value=46 Score=29.00 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=25.2
Q ss_pred HHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHH
Q 011577 416 KVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLE 449 (482)
Q Consensus 416 kI~ka~~e-L~~e~gr~pS~eEIAe~LGIS~etVk 449 (482)
+|-++..+ +...+....|.++||+..||+.+++-
T Consensus 13 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY 47 (203)
T 3cdl_A 13 SIVQAAIAEFGDRGFEITSMDRIAARAEVSKRTVY 47 (203)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHH
Confidence 34444444 45555568899999999999999984
No 201
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=33.61 E-value=42 Score=29.43 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=26.2
Q ss_pred HHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 415 SKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 415 ~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
.+|-++..++ ...+....|.++||+..||+.+++-.
T Consensus 14 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~ 50 (210)
T 2wui_A 14 DGILDAAERVFLEKGVGTTAMADLADAAGVSRGAVYG 50 (210)
T ss_dssp HHHHHHHHHHHHHSCTTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHH
Confidence 3444444454 44555678999999999999999854
No 202
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=33.61 E-value=47 Score=28.95 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=26.4
Q ss_pred HHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 415 SKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 415 ~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
.+|-.+..++ ...+....|.++||+..||+.+++-.
T Consensus 13 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t~Y~ 49 (210)
T 3vib_A 13 EHLMLAALETFYRKGIARTSLNEIAQAAGVTRDALYW 49 (210)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHH
Confidence 3444444444 55555688999999999999999854
No 203
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=33.55 E-value=62 Score=26.31 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=18.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|..|+|+.+||+..+|..+.+
T Consensus 41 glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 41 GVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHC
Confidence 46888888888888888877764
No 204
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=33.50 E-value=94 Score=27.56 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=21.5
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 432 PDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+|.++||..+|++.++|..++..-
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L 187 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSL 187 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHH
Confidence 599999999999999999888744
No 205
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=33.47 E-value=85 Score=26.76 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=22.9
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+-|+..+||+.+|+|..+|++++..-
T Consensus 27 ~LPse~~La~~~gvSr~tVr~Al~~L 52 (129)
T 2ek5_A 27 RVPSTNELAAFHRINPATARNGLTLL 52 (129)
T ss_dssp CBCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45699999999999999999998754
No 206
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=33.35 E-value=88 Score=24.78 Aligned_cols=68 Identities=21% Similarity=0.249 Sum_probs=38.1
Q ss_pred HccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHH
Q 011577 347 QYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426 (482)
Q Consensus 347 rY~~~g~d~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRnaI~~~Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~ 426 (482)
.|.......+||...-.+.--.--..|...-|..|..|+..+ ++..+...|..
T Consensus 14 ~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~~~~~~~~---------------------------Rl~~A~~lL~~ 66 (103)
T 3lsg_A 14 SYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQDYLLQK---------------------------RMEKAKLLLLT 66 (103)
T ss_dssp HTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHSSCHHHHHHHH---------------------------HHHHHHHHHHH
T ss_pred HccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHH---------------------------HHHHHHHHHHC
Confidence 343336788888777665554444455444455555555443 23333333332
Q ss_pred hcCCCCcHHHHHHHhCCC
Q 011577 427 EGNHSPDKEDLARRVGIT 444 (482)
Q Consensus 427 e~gr~pS~eEIAe~LGIS 444 (482)
. +.++.|||..+|.+
T Consensus 67 --~-~~si~~iA~~~Gf~ 81 (103)
T 3lsg_A 67 --T-ELKNYEIAEQVGFE 81 (103)
T ss_dssp --C-CCCHHHHHHHTTCS
T ss_pred --C-CCCHHHHHHHhCCC
Confidence 1 45788888888873
No 207
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=33.19 E-value=44 Score=30.09 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 415 SKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 415 ~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
.+|-++..++..+.| ..|..+||+.+|++..++-.
T Consensus 14 ~~Il~aA~~l~~~~G-~~s~~~IA~~aGvs~~tlY~ 48 (213)
T 2g7g_A 14 ERIAEAALELVDRDG-DFRMPDLARHLNVQVSSIYH 48 (213)
T ss_dssp HHHHHHHHHHHHHHS-SCCHHHHHHHTTSCHHHHHT
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHhCCCHhHHHH
Confidence 455566666777777 99999999999999998843
No 208
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=33.09 E-value=44 Score=28.09 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=22.0
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 432 PDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+|..|||+.+|++..+|...+..-
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L 66 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKL 66 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHH
Confidence 799999999999999999998754
No 209
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=33.07 E-value=52 Score=27.90 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011577 412 TLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 412 e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etV 448 (482)
....+|-++..++..+. ...|.++||+..||+.+++
T Consensus 14 ~~r~~Il~aA~~lf~~~-~~~t~~~Ia~~agvs~~t~ 49 (190)
T 2v57_A 14 RTRRAILDAAMLVLADH-PTAALGDIAAAAGVGRSTV 49 (190)
T ss_dssp HHHHHHHHHHHHHHTTC-TTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHH
No 210
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=32.83 E-value=45 Score=27.62 Aligned_cols=25 Identities=4% Similarity=0.097 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+.+..+||+.+|++..+|...+...
T Consensus 22 G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 22 NVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 4699999999999999999998754
No 211
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.74 E-value=53 Score=25.14 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.9
Q ss_pred CCCcHHHHHHHh-----CCCHHHHHHHHHHc
Q 011577 430 HSPDKEDLARRV-----GITVEKLERLIFIT 455 (482)
Q Consensus 430 r~pS~eEIAe~L-----GIS~etVk~~L~~a 455 (482)
..++.+||++.+ +++..+|...|..-
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L 62 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQF 62 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHH
Confidence 378999999999 99999999988743
No 212
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=32.68 E-value=50 Score=28.82 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=26.1
Q ss_pred HHHHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHH
Q 011577 414 LSKVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLE 449 (482)
Q Consensus 414 l~kI~ka~~e-L~~e~gr~pS~eEIAe~LGIS~etVk 449 (482)
..+|-++..+ +...+....|.++||+..||+.+++-
T Consensus 16 r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~tlY 52 (199)
T 3crj_A 16 TEEIMQATYRALREHGYADLTIQRIADEYGKSTAAVH 52 (199)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChhHHh
Confidence 3444444444 45555568899999999999999883
No 213
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=32.56 E-value=71 Score=28.24 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=20.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|.+++|+.+|++..+|..+.+
T Consensus 24 gltq~~lA~~~gis~~~is~~e~ 46 (192)
T 1y9q_A 24 GLSLDATAQLTGVSKAMLGQIER 46 (192)
T ss_dssp TCCHHHHHHHHSSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 58999999999999999988765
No 214
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=32.43 E-value=1.5e+02 Score=25.70 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.6
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 432 PDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.|.++||..+|++.++|..++..-
T Consensus 164 ~t~~~lA~~lg~sr~tvsR~l~~l 187 (216)
T 4ev0_A 164 IRHHELAALAGTSRETVSRVLHAL 187 (216)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Confidence 489999999999999999998754
No 215
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=32.37 E-value=1.2e+02 Score=25.84 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=20.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|-.++..-
T Consensus 52 ~~t~~eLa~~l~~~~~tvsr~v~~L 76 (148)
T 4fx0_A 52 DLTMSELAARIGVERTTLTRNLEVM 76 (148)
T ss_dssp --CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHH
Confidence 5799999999999999999887743
No 216
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=32.37 E-value=57 Score=31.79 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=24.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcCC
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITRM 457 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~ 457 (482)
..+..|||+.||+|..+|+..|..++.
T Consensus 21 ~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 21 DMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp CCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 689999999999999999999987643
No 217
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=32.32 E-value=52 Score=28.12 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 413 LLSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 413 ~l~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
...+|-++..++ ...+-...|..+||+..||+.+++-.
T Consensus 13 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 51 (202)
T 3lwj_A 13 RRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYN 51 (202)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHH
Confidence 344455555555 44454678999999999999999865
No 218
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=32.25 E-value=51 Score=28.80 Aligned_cols=36 Identities=11% Similarity=0.199 Sum_probs=26.2
Q ss_pred HHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011577 416 KVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLERL 451 (482)
Q Consensus 416 kI~ka~~e-L~~e~gr~pS~eEIAe~LGIS~etVk~~ 451 (482)
+|-++..+ +...+....|.++||+..||+.+++-..
T Consensus 12 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tiY~~ 48 (202)
T 2d6y_A 12 RIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAY 48 (202)
T ss_dssp HHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHH
Confidence 44444444 4555556889999999999999998653
No 219
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=32.20 E-value=53 Score=28.21 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011577 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 417 I~ka~~eL~~e~gr~pS~eEIAe~LGIS~etV 448 (482)
+..+...+...+....|..+||+..||+.+++
T Consensus 22 l~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~ 53 (213)
T 2qtq_A 22 LQTASNIMREGDVVDISLSELSLRSGLNSALV 53 (213)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHcCcccccHHHHHHHhCCChhhH
No 220
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=32.11 E-value=62 Score=28.15 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=26.9
Q ss_pred HHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 414 LSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 414 l~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
..+|.++..++ ...+....|.++||+..||+.+++-.
T Consensus 25 r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~ 62 (214)
T 2zb9_A 25 RAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYK 62 (214)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHH
Confidence 44555555555 44454678999999999999999854
No 221
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=32.01 E-value=1e+02 Score=27.92 Aligned_cols=25 Identities=8% Similarity=0.197 Sum_probs=22.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..|.++||..+|++.++|..++..-
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L 201 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASL 201 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHH
Confidence 4599999999999999999998754
No 222
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=31.96 E-value=72 Score=24.71 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|...+..-
T Consensus 34 ~~s~~ela~~l~is~~tv~~~l~~L 58 (109)
T 1sfx_A 34 GMRVSEIARELDLSARFVRDRLKVL 58 (109)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5899999999999999999998753
No 223
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=31.94 E-value=1.7e+02 Score=23.64 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|...+..-
T Consensus 45 ~~~~~ela~~l~is~~~vs~~l~~L 69 (142)
T 3bdd_A 45 PLHQLALQERLQIDRAAVTRHLKLL 69 (142)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5899999999999999999988754
No 224
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=31.84 E-value=54 Score=27.80 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011577 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 417 I~ka~~eL~~e~gr~pS~eEIAe~LGIS~etV 448 (482)
+..+...+...+....|.++||+..|++.+++
T Consensus 17 l~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~ 48 (196)
T 3he0_A 17 LAAAEQLIAESGFQGLSMQKLANEAGVAAGTI 48 (196)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHhCCCcchH
No 225
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=31.76 E-value=39 Score=28.53 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011577 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 417 I~ka~~eL~~e~gr~pS~eEIAe~LGIS~etV 448 (482)
+..+...+...+....|.++||+..||+.+++
T Consensus 16 l~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 47 (196)
T 3col_A 16 QDAVAAIILAEGPAGVSTTKVAKRVGIAQSNV 47 (196)
T ss_dssp HHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCcccCCHHHHHHHhCCcHHHH
No 226
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=31.75 E-value=75 Score=26.53 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=21.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|.+|+|+.+|++..+|..+-.
T Consensus 84 glsq~~la~~~g~s~~~i~~~E~ 106 (133)
T 3o9x_A 84 SLTQKEASEIFGGGVNAFSRYEK 106 (133)
T ss_dssp TCCHHHHHHHHCSCTTHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHC
Confidence 58999999999999999998876
No 227
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=31.71 E-value=53 Score=28.68 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 418 LEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 418 ~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
..+...+...+....|.++||+..||+.+++-.
T Consensus 18 ~aA~~lF~~~Gy~~ts~~~IA~~aGvsk~tlY~ 50 (202)
T 2i10_A 18 QTAMELFWRQGYEGTSITDLTKALGINPPSLYA 50 (202)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHhCcccCCHHHHHHHhCCChHHHHH
Confidence 334444555565678999999999999999854
No 228
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=31.70 E-value=64 Score=27.04 Aligned_cols=25 Identities=8% Similarity=0.151 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 51 ~~t~~eLa~~l~~~~~~vs~~l~~L 75 (151)
T 3kp7_A 51 ALTVGQITEKQGVNKAAVSRRVKKL 75 (151)
T ss_dssp CBCHHHHHHHHCSCSSHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 6899999999999999999988754
No 229
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=31.68 E-value=23 Score=32.26 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=24.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcCCCc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITRMPL 459 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (482)
+.+..+||+.||++..+|+..+......+
T Consensus 213 g~~~~eia~~l~~s~~tv~~~l~~i~~kl 241 (258)
T 3p7n_A 213 GLRNKEVAARLGLSEKTVKMHRGLVMEKL 241 (258)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 56999999999999999999887665443
No 230
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=31.57 E-value=80 Score=27.29 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=26.3
Q ss_pred HHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHH
Q 011577 414 LSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLE 449 (482)
Q Consensus 414 l~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk 449 (482)
..+|-++..++ ...+....|.++||+..||+.+++-
T Consensus 13 r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y 49 (212)
T 2ras_A 13 RARLVDVAQAIVEERGGAGLTLSELAARAGISQANLS 49 (212)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHHT
T ss_pred HHHHHHHHHHHHHHhCcccCcHHHHHHHhCCCHHHHH
Confidence 34455555554 4455568899999999999999884
No 231
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=31.56 E-value=53 Score=27.64 Aligned_cols=32 Identities=25% Similarity=0.515 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011577 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 417 I~ka~~eL~~e~gr~pS~eEIAe~LGIS~etV 448 (482)
+..+...+...+....|..+||+..|++.+++
T Consensus 15 l~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~ 46 (195)
T 3ppb_A 15 LETALQLFVSQGFHGTSTATIAREAGVATGTL 46 (195)
T ss_dssp HHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHhcCcccCCHHHHHHHhCCChhHH
No 232
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=31.51 E-value=48 Score=26.37 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=19.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
+.|..++|+.+|++..+|..+..-
T Consensus 14 gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 14 GYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 478888888888888888877653
No 233
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=31.17 E-value=48 Score=26.10 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.2
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 432 PDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.+..+||+.+||+..+|...+...
T Consensus 39 ~s~~~iA~~~gIs~sTl~rW~k~~ 62 (87)
T 2elh_A 39 ESKASVARDIGVPESTLRGWCKNE 62 (87)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 599999999999999999887643
No 234
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=31.14 E-value=97 Score=26.91 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=21.6
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 432 PDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.|.++||..+|++.++|..++..-
T Consensus 168 ~t~~~iA~~lg~sr~tvsR~l~~L 191 (210)
T 3ryp_A 168 ITRQEIGQIVGCSRETVGRILKML 191 (210)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHH
Confidence 589999999999999999998754
No 235
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=31.09 E-value=55 Score=28.35 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011577 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 417 I~ka~~eL~~e~gr~pS~eEIAe~LGIS~etV 448 (482)
+..+...+...+....|..+||+..||+.+++
T Consensus 17 l~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~ 48 (216)
T 3f0c_A 17 INAAQKRFAHYGLCKTTMNEIASDVGMGKASL 48 (216)
T ss_dssp HHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHhCCCHHHH
No 236
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=31.03 E-value=50 Score=28.09 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011577 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 417 I~ka~~eL~~e~gr~pS~eEIAe~LGIS~etV 448 (482)
+..+...+...+....|..+||+..||+.+++
T Consensus 23 l~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~ 54 (206)
T 3kz9_A 23 MEIALEVFARRGIGRGGHADIAEIAQVSVATV 54 (206)
T ss_dssp HHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCcccccHHHHHHHhCCCHHHH
No 237
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=30.72 E-value=77 Score=28.03 Aligned_cols=24 Identities=25% Similarity=0.099 Sum_probs=20.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
..|.+|+|+.+|++..+|..+.+-
T Consensus 23 g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 23 KMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 589999999999999999887763
No 238
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=30.69 E-value=40 Score=26.44 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+.+|||+.+|++++.|..++++.
T Consensus 48 ~~~l~eia~~l~~~~~eve~vL~~l 72 (76)
T 2k9l_A 48 SKSVEEISDVLRCSVEELEKVRQKV 72 (76)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 4589999999999999999998864
No 239
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=30.68 E-value=33 Score=30.95 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
-.|..|+|+.|||+..+|+.+++..
T Consensus 31 ~LTv~EVAe~LgVs~srV~~LIr~G 55 (148)
T 2kfs_A 31 TYDLPRVAELLGVPVSKVAQQLREG 55 (148)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHTT
T ss_pred eEcHHHHHHHhCCCHHHHHHHHHCC
Confidence 4599999999999999999998743
No 240
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=30.65 E-value=51 Score=28.33 Aligned_cols=36 Identities=28% Similarity=0.506 Sum_probs=26.0
Q ss_pred HHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 414 LSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 414 l~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
..+|-++..++ ...+. ..|.++||+..||+.+++-.
T Consensus 18 r~~Il~aA~~lf~~~G~-~~s~~~Ia~~agvs~~t~Y~ 54 (199)
T 2rek_A 18 YDRIIEAAAAEVARHGA-DASLEEIARRAGVGSATLHR 54 (199)
T ss_dssp HHHHHHHHHHHHHHHGG-GCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CCCHHHHHHHhCCchHHHHH
Confidence 34454544444 44455 78999999999999999854
No 241
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=30.56 E-value=56 Score=28.65 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=25.0
Q ss_pred HHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHH
Q 011577 416 KVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLE 449 (482)
Q Consensus 416 kI~ka~~e-L~~e~gr~pS~eEIAe~LGIS~etVk 449 (482)
+|-++..+ +...+....|.++||+..||+.+++-
T Consensus 15 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY 49 (219)
T 2w53_A 15 GILDAAEACFHEHGVARTTLEMIGARAGYTRGAVY 49 (219)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHh
Confidence 34444444 45555568899999999999999884
No 242
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=30.42 E-value=24 Score=29.35 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=22.0
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 432 PDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.+..|||+.+|++..+|..++..-
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~L 75 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKSL 75 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999999999999988753
No 243
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=30.41 E-value=60 Score=30.98 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=26.6
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHHcC
Q 011577 428 GNHSPDKEDLARRVGITVEKLERLIFITR 456 (482)
Q Consensus 428 ~gr~pS~eEIAe~LGIS~etVk~~L~~ar 456 (482)
.|+.|+..+||+.+|+++++|+.+|....
T Consensus 33 ~Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 33 KGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 67799999999999999999999998764
No 244
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=30.34 E-value=44 Score=28.42 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=26.2
Q ss_pred HHHHHHHHHHH-HhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 415 SKVLEAKRLYI-QEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 415 ~kI~ka~~eL~-~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
.+|-++..++. ..+....|.++||+..||+.+++-.
T Consensus 11 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (206)
T 3dew_A 11 SRLMEVATELFAQKGFYGVSIRELAQAAGASISMISY 47 (206)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHH
Confidence 34545555554 4444588999999999999999855
No 245
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=30.29 E-value=58 Score=27.70 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011577 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 417 I~ka~~eL~~e~gr~pS~eEIAe~LGIS~etV 448 (482)
+..+...+...+....|..+||+..||+.+++
T Consensus 20 l~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 51 (203)
T 3f1b_A 20 LDAAVDVFSDRGFHETSMDAIAAKAEISKPML 51 (203)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCcccccHHHHHHHhCCchHHH
No 246
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=30.20 E-value=58 Score=28.04 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=26.8
Q ss_pred HHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011577 415 SKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLERL 451 (482)
Q Consensus 415 ~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~~ 451 (482)
.+|.++..++ ...+....|.++||+..||+.+++-..
T Consensus 20 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 57 (207)
T 2rae_A 20 DRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFRY 57 (207)
T ss_dssp HHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhhh
Confidence 3444444444 455556789999999999999998764
No 247
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=30.19 E-value=54 Score=28.40 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHh-cCCCCcHHHHHHHhCCCHHHHHH
Q 011577 415 SKVLEAKRLYIQE-GNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 415 ~kI~ka~~eL~~e-~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
.+|.++..++..+ +-...|..+||+..||+.+++-.
T Consensus 15 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 51 (189)
T 3vp5_A 15 NRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFYQ 51 (189)
T ss_dssp HHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHHH
Confidence 3454555555444 44688999999999999998854
No 248
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=29.92 E-value=63 Score=25.70 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=19.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|..++|+.+|++..+|..+..
T Consensus 31 gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 31 DINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 47889999999999998888765
No 249
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=29.87 E-value=1.7e+02 Score=27.12 Aligned_cols=51 Identities=12% Similarity=-0.012 Sum_probs=34.4
Q ss_pred HccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHHHH
Q 011577 347 QYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIF 398 (482)
Q Consensus 347 rY~~~g~d~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRnaI~~~Lr 398 (482)
.........+||.+...+.--.--..|.. -|..|..|+..+.-+...+.|.
T Consensus 180 ~~~~~~~sl~~lA~~~~~S~~~l~r~fk~-~G~t~~~~l~~~Rl~~A~~lL~ 230 (276)
T 3gbg_A 180 SDITRNWRWADICGELRTNRMILKKELES-RGVKFRELINSIRISYSISLMK 230 (276)
T ss_dssp HTTTSCCCHHHHHHHHTCCHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCCHHHHHHHHCcCHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHh
Confidence 33445788999988887777666666753 6777888877655555544443
No 250
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=29.58 E-value=59 Score=28.41 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011577 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 417 I~ka~~eL~~e~gr~pS~eEIAe~LGIS~etV 448 (482)
+..+...+...+ ...|.++||+..||+.+++
T Consensus 26 l~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tl 56 (215)
T 2hku_A 26 FTAATELFLEHG-EGVPITQICAAAGAHPNQV 56 (215)
T ss_dssp HHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHH
No 251
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=29.44 E-value=66 Score=26.40 Aligned_cols=31 Identities=10% Similarity=0.264 Sum_probs=24.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcCCCccCc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (482)
+.|..|+|+.+||+..+|..+.+ .+..++++
T Consensus 27 gltq~eLA~~lGis~~~is~ie~-G~~~~s~~ 57 (104)
T 3trb_A 27 KMSANQLAKHLAIPTNRVTAILN-GARSITAD 57 (104)
T ss_dssp SCCHHHHHHHHTSCHHHHHHHHT-TSSCCCHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc-CCCCCCHH
Confidence 58999999999999999998876 33345554
No 252
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=29.42 E-value=59 Score=27.99 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011577 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 417 I~ka~~eL~~e~gr~pS~eEIAe~LGIS~etV 448 (482)
+..+...+...+....|.++||+..||+.+++
T Consensus 37 l~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~ 68 (218)
T 3dcf_A 37 IKVATELFREKGYYATSLDDIADRIGFTKPAI 68 (218)
T ss_dssp HHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHcCcccCcHHHHHHHhCCCHHHH
No 253
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=29.40 E-value=46 Score=28.40 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 413 LLSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 413 ~l~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
...+|-++..++ ...+....|.++||+..||+.+++-.
T Consensus 18 ~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~ 56 (208)
T 3cwr_A 18 VRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYR 56 (208)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHHHH
Confidence 344555555554 44454578999999999999999854
No 254
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=29.18 E-value=62 Score=27.44 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=22.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+.+..+||+.+|++..+|...+...
T Consensus 48 G~s~~~iA~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 48 GVRPCDISRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4699999999999999999998764
No 255
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=29.17 E-value=74 Score=26.99 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=7.4
Q ss_pred HHHHHHHhCCCHHHH
Q 011577 434 KEDLARRVGITVEKL 448 (482)
Q Consensus 434 ~eEIAe~LGIS~etV 448 (482)
...||+.||++.+.+
T Consensus 54 l~~ia~~L~v~~~~l 68 (130)
T 3fym_A 54 IRKYASVVNIEPNQL 68 (130)
T ss_dssp HHHHHHHTTCCHHHH
T ss_pred HHHHHHHhCCCHHHH
Confidence 344555555555444
No 256
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=28.70 E-value=83 Score=24.86 Aligned_cols=26 Identities=23% Similarity=0.173 Sum_probs=19.9
Q ss_pred HHHHhhhCCCCcHHHHHHHhcCCHHH
Q 011577 293 SKLQSQFGREPTLIEWAKAIGLSCRD 318 (482)
Q Consensus 293 ~~l~~~~g~~pt~~ewA~a~gmdd~e 318 (482)
..+.+..|.+||..|.|++.|++...
T Consensus 15 ~~i~~~~g~~psv~EIa~~lgvS~~T 40 (77)
T 2jt1_A 15 ERQNMDDGAPVKTRDIADAAGLSIYQ 40 (77)
T ss_dssp HHHHHHTTSCEEHHHHHHHHTCCHHH
T ss_pred HHHhhccCCCcCHHHHHHHHCCCHHH
Confidence 33344458899999999999998644
No 257
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=28.68 E-value=58 Score=25.44 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=19.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|..++|+.+|++..+|..+..
T Consensus 17 gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 17 YLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 57999999999999999987654
No 258
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=28.62 E-value=61 Score=30.63 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=23.8
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 428 GNHSPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 428 ~gr~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
+.+-|+..|||+.+|++..+|++++..
T Consensus 33 g~~lPse~~La~~~~vSr~tvr~Al~~ 59 (248)
T 3f8m_A 33 GDPFPAEREIAEQFEVARETVRQALRE 59 (248)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 445689999999999999999999874
No 259
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=28.51 E-value=1.8e+02 Score=25.66 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=22.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..|.++||..+|++.++|..++..-
T Consensus 180 ~~t~~~lA~~lg~sr~tvsR~l~~l 204 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTF 204 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHH
Confidence 4599999999999999999988754
No 260
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=28.49 E-value=46 Score=29.04 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=26.9
Q ss_pred HHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 414 LSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 414 l~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
..+|-++..++ ...+....|.++||+..||+.+++-.
T Consensus 13 r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~ 50 (210)
T 2xdn_A 13 RAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYW 50 (210)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCcHHHHHHHHCCChHHHHH
Confidence 34455555554 44555688999999999999988854
No 261
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=28.46 E-value=56 Score=27.35 Aligned_cols=37 Identities=11% Similarity=0.051 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhcC-CCCcHHHHHHHhCCCHHHHH
Q 011577 413 LLSKVLEAKRLYIQEGN-HSPDKEDLARRVGITVEKLE 449 (482)
Q Consensus 413 ~l~kI~ka~~eL~~e~g-r~pS~eEIAe~LGIS~etVk 449 (482)
...+|.++..+|..+.| ...|..+||+..||+.+++-
T Consensus 13 tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 50 (177)
T 3kkc_A 13 TKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFY 50 (177)
T ss_dssp HHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHT
T ss_pred HHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHH
Confidence 33455555555554444 57899999999999999874
No 262
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=28.39 E-value=63 Score=28.77 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=24.4
Q ss_pred HHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHH
Q 011577 417 VLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLE 449 (482)
Q Consensus 417 I~ka~~e-L~~e~gr~pS~eEIAe~LGIS~etVk 449 (482)
|.++..+ +...+....|.++||+..||+.+++-
T Consensus 35 Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y 68 (230)
T 2iai_A 35 LLSVAVQVFIERGYDGTSMEHLSKAAGISKSSIY 68 (230)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHT
T ss_pred HHHHHHHHHHHcCccccCHHHHHHHHCCChhHHH
Confidence 4444444 45555567899999999999999873
No 263
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=28.39 E-value=76 Score=24.53 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=22.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|...+..-
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L 62 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARM 62 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5799999999999999999988753
No 264
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=28.38 E-value=1.5e+02 Score=24.30 Aligned_cols=25 Identities=4% Similarity=0.110 Sum_probs=22.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~L 69 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTL 69 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5899999999999999999988753
No 265
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=28.28 E-value=70 Score=25.35 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|.+|+|+.+||+..+|..+..
T Consensus 43 glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 43 KLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCHHHHHHHhCcCHHHHHHHHc
Confidence 58999999999999999988865
No 266
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=28.14 E-value=1.2e+02 Score=24.92 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=19.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~l~~L 75 (142)
T 3ech_A 51 GLNLQDLGRQMCRDKALITRKIREL 75 (142)
T ss_dssp TCCHHHHHHHHC---CHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHHH
Confidence 6899999999999999999888743
No 267
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=28.07 E-value=18 Score=29.21 Aligned_cols=26 Identities=15% Similarity=0.404 Sum_probs=22.7
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+-|+..|||+.+|++..+|+..+..-
T Consensus 34 ~lps~~eLa~~~~vSr~tvr~al~~L 59 (102)
T 1v4r_A 34 TLPSVADIRAQFGVAAKTVSRALAVL 59 (102)
T ss_dssp BCCCHHHHHHHSSSCTTHHHHHTTTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34699999999999999999998754
No 268
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=27.85 E-value=1.4e+02 Score=26.37 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.+|.++||..+|++.++|..++..-
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l 201 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADF 201 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHH
Confidence 4699999999999999999988754
No 269
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=27.84 E-value=61 Score=23.87 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=18.5
Q ss_pred cHHHHHHHhCCCHHHHHHHH
Q 011577 433 DKEDLARRVGITVEKLERLI 452 (482)
Q Consensus 433 S~eEIAe~LGIS~etVk~~L 452 (482)
|..++|+.+||+..+|....
T Consensus 12 tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHCC
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 89999999999999998875
No 270
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=27.82 E-value=78 Score=29.05 Aligned_cols=29 Identities=7% Similarity=0.056 Sum_probs=22.9
Q ss_pred HHHhcCCCCcHHHHHHHhCCCHHHHHHHHH
Q 011577 424 YIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 424 L~~e~gr~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+..+.+ ..+.+|||+.+|+|+.+|+.=+.
T Consensus 20 ~l~~~~-~~~~~~la~~~~vs~~TiRrDl~ 48 (190)
T 4a0z_A 20 QIDSNP-FITDHELSDLFQVSIQTIRLDRT 48 (190)
T ss_dssp HHHHCT-TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHCC-CEeHHHHHHHHCCCHHHHHHHHH
Confidence 334444 67999999999999999987554
No 271
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=27.75 E-value=37 Score=32.84 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=22.9
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 428 GNHSPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 428 ~gr~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
..+.+|+++||+..|+|..||..+|+.
T Consensus 6 ~~~~~Ti~diA~~aGVS~~TVSrvLn~ 32 (366)
T 3h5t_A 6 KQQYGTLASIAAKLGISRTTVSNAYNR 32 (366)
T ss_dssp -CCTTHHHHHHHHHTSCHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHCC
Confidence 345789999999999999999888863
No 272
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=27.71 E-value=1.1e+02 Score=23.91 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=21.3
Q ss_pred CCcHHHHHHHhCCCHHH-HHHHHHH
Q 011577 431 SPDKEDLARRVGITVEK-LERLIFI 454 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~et-Vk~~L~~ 454 (482)
.++..|||+.+|++..+ |..++..
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~ 54 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDR 54 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHH
Confidence 68999999999999999 8777764
No 273
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=27.66 E-value=51 Score=27.85 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=24.5
Q ss_pred HHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHH
Q 011577 416 KVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLE 449 (482)
Q Consensus 416 kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk 449 (482)
+|-++..++ ...+....|..+||+..|++.+++-
T Consensus 12 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y 46 (183)
T 1zk8_A 12 KIVETAAEIADANGVQEVTLASLAQTLGVRSPSLY 46 (183)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHT
T ss_pred HHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHH
Confidence 444444444 4444457899999999999998873
No 274
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=27.61 E-value=50 Score=28.80 Aligned_cols=36 Identities=14% Similarity=0.299 Sum_probs=25.7
Q ss_pred HHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 415 SKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 415 ~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
.+|-++..++ ...+....|.++||+..||+.+++-.
T Consensus 12 ~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~gtlY~ 48 (203)
T 2np5_A 12 ERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQH 48 (203)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhccHHHHHHHhCCCHHHHHH
Confidence 3444444444 44555578999999999999999854
No 275
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.58 E-value=1.2e+02 Score=22.86 Aligned_cols=21 Identities=10% Similarity=0.281 Sum_probs=18.5
Q ss_pred cHHHHHHHhCCCHHHHHHHHH
Q 011577 433 DKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 433 S~eEIAe~LGIS~etVk~~L~ 453 (482)
..++||..||+++..|+...+
T Consensus 32 ~r~~LA~~l~L~e~qVqvWFq 52 (64)
T 2e19_A 32 ELSKIADSVNLPLDVVKKWFE 52 (64)
T ss_dssp HHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhCcChhhcCcchh
Confidence 467899999999999999874
No 276
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=27.33 E-value=82 Score=27.39 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=25.5
Q ss_pred HHHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHH
Q 011577 415 SKVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLE 449 (482)
Q Consensus 415 ~kI~ka~~e-L~~e~gr~pS~eEIAe~LGIS~etVk 449 (482)
.+|-++..+ +...+....|.++||+..||+.+++-
T Consensus 15 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY 50 (200)
T 2hyj_A 15 GRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVH 50 (200)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHH
Confidence 344444444 45555567899999999999999884
No 277
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=27.32 E-value=72 Score=24.88 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=20.0
Q ss_pred cHHHHHHHhCCCHHHHHHHHHH
Q 011577 433 DKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 433 S~eEIAe~LGIS~etVk~~L~~ 454 (482)
+.++||+.|||+..+|...+..
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 6899999999999999999764
No 278
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=27.32 E-value=1e+02 Score=26.29 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=19.7
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
...+..|||+.+|++..+|..++..-
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~L 86 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRL 86 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 46899999999999999999887743
No 279
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=27.25 E-value=66 Score=26.86 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=16.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 57 ~~t~~eLa~~l~~~~~~vs~~l~~L 81 (148)
T 3jw4_A 57 GIIQKDLAQFFGRRGASITSMLQGL 81 (148)
T ss_dssp CCCHHHHHHC------CHHHHHHHH
T ss_pred CCCHHHHHHHHCCChhHHHHHHHHH
Confidence 6899999999999999998887743
No 280
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=27.13 E-value=1e+02 Score=27.38 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011577 407 PENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 407 P~~v~e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etV 448 (482)
++.....-.-+..+...+...+....|.++||+..||+.+++
T Consensus 39 ~r~~~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~ 80 (229)
T 3bni_A 39 RRSAERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSV 80 (229)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhH
No 281
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=27.01 E-value=34 Score=26.58 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHH
Q 011577 430 HSPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
++.|..+||+.+|++..+|..++.
T Consensus 21 ~glT~~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 21 RKLSLSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp TSCCHHHHHHHHSSCHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 468999999999999999998755
No 282
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=26.97 E-value=51 Score=27.78 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcC-CCCcHHHHHHHhCCCHHHH
Q 011577 406 LPENIYTLLSKVLEAKRLYIQEGN-HSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 406 lP~~v~e~l~kI~ka~~eL~~e~g-r~pS~eEIAe~LGIS~etV 448 (482)
.+........+|-++..++..+.| ...|.++||+..||+.+++
T Consensus 2 m~~~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 45 (195)
T 3pas_A 2 MRQRDDSKRIAFLEATVREVADHGFSATSVGKIAKAAGLSPATL 45 (195)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHH
T ss_pred CccchhHHHHHHHHHHHHHHHHcChHhcCHHHHHHHhCCCchHH
No 283
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=26.91 E-value=67 Score=27.59 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=25.5
Q ss_pred HHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 416 KVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 416 kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
+|-++..++ ...+....|.++||+..|++.+++-.
T Consensus 8 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 43 (185)
T 2yve_A 8 MILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIY 43 (185)
T ss_dssp HHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHH
Confidence 344444454 44455678999999999999999854
No 284
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=26.84 E-value=53 Score=26.01 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=22.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcC
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITR 456 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar 456 (482)
+.++.+||..+||+..+|...+....
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 46999999999999999999987654
No 285
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=26.79 E-value=52 Score=28.49 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=26.7
Q ss_pred HHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 414 LSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 414 l~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
..+|-++..++ ...+....|.++||+..||+.+++-.
T Consensus 14 r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~ 51 (197)
T 2hyt_A 14 RATLLATARKVFSERGYADTSMDDLTAQASLTRGALYH 51 (197)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCTTHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHH
Confidence 34455555554 44555688999999999999988854
No 286
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=26.66 E-value=78 Score=25.95 Aligned_cols=23 Identities=4% Similarity=0.150 Sum_probs=21.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+.|.+|+|+.+||+..+|..+..
T Consensus 36 gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 36 GLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHC
Confidence 58999999999999999998876
No 287
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=26.59 E-value=35 Score=29.51 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHh-cCCCCcHHHHHHHhCCCHHHH
Q 011577 415 SKVLEAKRLYIQE-GNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 415 ~kI~ka~~eL~~e-~gr~pS~eEIAe~LGIS~etV 448 (482)
.+|-++..++..+ +....|.++||+..||+.+++
T Consensus 16 ~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~ 50 (195)
T 2iu5_A 16 KIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTF 50 (195)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGG
T ss_pred HHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHH
Confidence 4455555555444 445689999999999998776
No 288
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=26.47 E-value=30 Score=33.22 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=21.9
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 429 NHSPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
.+.+|+++||+..|+|..||..+|+.
T Consensus 8 ~~~~ti~diA~~agVS~~TVSr~Ln~ 33 (344)
T 3kjx_A 8 KRPLTLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp --CCCHHHHHHHHCCCSHHHHHHHTT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 34689999999999999999988853
No 289
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=26.37 E-value=83 Score=24.75 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=19.6
Q ss_pred CCcHHHHHHHhCCCHHH----HHHHHH
Q 011577 431 SPDKEDLARRVGITVEK----LERLIF 453 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~et----Vk~~L~ 453 (482)
+.|.+|+|+.+|++..+ |..+..
T Consensus 14 glsq~~lA~~~gis~~~~~~~is~~E~ 40 (98)
T 3lfp_A 14 GISQEKLGVLAGIDEASASARMNQYEK 40 (98)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCcchhhhHHHHHHC
Confidence 57999999999999999 777665
No 290
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=26.26 E-value=87 Score=25.39 Aligned_cols=28 Identities=11% Similarity=0.248 Sum_probs=24.3
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 428 GNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 428 ~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
...+++..|||+.+|++..+|..++.+-
T Consensus 33 g~~gi~qkeLa~~~~l~~~tvt~iLk~L 60 (91)
T 2dk5_A 33 GNKGIWSRDVRYKSNLPLTEINKILKNL 60 (91)
T ss_dssp CTTCEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3447899999999999999999998754
No 291
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=26.20 E-value=63 Score=27.85 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011577 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 417 I~ka~~eL~~e~gr~pS~eEIAe~LGIS~etV 448 (482)
+..+...+...+....|..+||+..||+.+++
T Consensus 16 l~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 47 (216)
T 3s5r_A 16 LDAATTLFAEQGIAATTMAEIAASVGVNPAMI 47 (216)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHcCcccCCHHHHHHHHCCCHHHH
No 292
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=25.78 E-value=57 Score=24.46 Aligned_cols=26 Identities=12% Similarity=-0.086 Sum_probs=22.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcC
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITR 456 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar 456 (482)
-.+.+|+|+.||++..++...+....
T Consensus 10 ~l~~~eva~~lgvsrstiy~~~~~g~ 35 (66)
T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKSGD 35 (66)
T ss_dssp EECHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 35899999999999999999988653
No 293
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=25.73 E-value=2e+02 Score=24.62 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 59 ~~t~~eLa~~l~is~~tvs~~l~~L 83 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGRMVDRL 83 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 5899999999999999999988754
No 294
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=25.39 E-value=52 Score=28.18 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHh-cCCCCcHHHHHHHhCCCHHHHHHH
Q 011577 416 KVLEAKRLYIQE-GNHSPDKEDLARRVGITVEKLERL 451 (482)
Q Consensus 416 kI~ka~~eL~~e-~gr~pS~eEIAe~LGIS~etVk~~ 451 (482)
+|-++..++..+ +....|.++||+..||+.+++-..
T Consensus 11 ~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 47 (195)
T 2dg7_A 11 RLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRY 47 (195)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHH
Confidence 444455555444 445689999999999999998765
No 295
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=25.39 E-value=53 Score=28.31 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHh-cCCCCcHHHHHHHhCCCHHHHHHH
Q 011577 414 LSKVLEAKRLYIQE-GNHSPDKEDLARRVGITVEKLERL 451 (482)
Q Consensus 414 l~kI~ka~~eL~~e-~gr~pS~eEIAe~LGIS~etVk~~ 451 (482)
..+|-++..++..+ +....|.++||+..||+.+++-..
T Consensus 10 r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~ 48 (199)
T 2o7t_A 10 REHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRN 48 (199)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHHHHH
Confidence 34555555555444 445679999999999999998553
No 296
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=25.22 E-value=2e+02 Score=25.90 Aligned_cols=25 Identities=8% Similarity=-0.068 Sum_probs=22.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 62 ~~t~~eLa~~l~i~~stvs~~l~~L 86 (207)
T 2fxa_A 62 GASISEIAKFGVMHVSTAFNFSKKL 86 (207)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 6899999999999999998887743
No 297
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=25.18 E-value=1.2e+02 Score=21.80 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHH
Q 011577 434 KEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 434 ~eEIAe~LGIS~etVk~~L~~ 454 (482)
+.+||..+||+..+|...+..
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 999999999999999888653
No 298
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=25.16 E-value=1.1e+02 Score=26.21 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHH-HhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011577 412 TLLSKVLEAKRLYI-QEGNHSPDKEDLARRVGITVEKLERL 451 (482)
Q Consensus 412 e~l~kI~ka~~eL~-~e~gr~pS~eEIAe~LGIS~etVk~~ 451 (482)
....+|-++..++. ..+....|..+||+..|++.+++-..
T Consensus 26 ~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 66 (217)
T 3mvp_A 26 EKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYAY 66 (217)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHHHHH
Confidence 34445555555554 44446889999999999999998653
No 299
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=24.99 E-value=76 Score=27.60 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=21.6
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 432 PDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+|.++||..+|++.++|..++..-
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L 163 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADL 163 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Confidence 589999999999999999988754
No 300
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=24.85 E-value=69 Score=27.77 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=22.6
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 430 HSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..++.+|||+.+|++...|++++..-
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L 54 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYL 54 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35799999999999999999998743
No 301
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=24.75 E-value=78 Score=28.55 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=26.7
Q ss_pred HHHHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 414 LSKVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 414 l~kI~ka~~e-L~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
..+|-++..+ +...+....|..+||+..|++.+++-.
T Consensus 25 r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~ 62 (231)
T 2zcx_A 25 EEAILDAARELGTERGIREITLTDIAATVGMHKSALLR 62 (231)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHH
Confidence 3444444444 445555688999999999999998854
No 302
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=24.75 E-value=2.7e+02 Score=23.52 Aligned_cols=74 Identities=16% Similarity=0.024 Sum_probs=44.8
Q ss_pred hhhC-CCCcHHHHHHHhcCCHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhH
Q 011577 297 SQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370 (482)
Q Consensus 297 ~~~g-~~pt~~ewA~a~gmdd~eLi~~l~~Gd~Are~LI~snlrLV~sIAkrY~~~g~d~EDLIQEG~IGLirAi 370 (482)
...| ...|..+.|+.+|++...+-.-...-++-+..++..+..-+..........+.+..+.+...+..+++.+
T Consensus 39 ~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (212)
T 3nxc_A 39 SSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFG 113 (212)
T ss_dssp C------CCHHHHHHHTTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred hcCChhhcCHHHHHHHhCCChhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3345 5579999999999998877766655556666666666555555554444444566666655555555444
No 303
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=24.72 E-value=61 Score=28.21 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=26.7
Q ss_pred HHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011577 415 SKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLERL 451 (482)
Q Consensus 415 ~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~~ 451 (482)
.+|-++..++ ...+....|..+||+..||+.+++-..
T Consensus 18 ~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~ 55 (221)
T 3c2b_A 18 NAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKW 55 (221)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHh
Confidence 3455555554 444446789999999999999998553
No 304
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=24.71 E-value=49 Score=29.31 Aligned_cols=39 Identities=10% Similarity=0.150 Sum_probs=31.3
Q ss_pred HHHHhcCCCCcHHHHHHHhC---CCHHHHHHHHHHcCCCccC
Q 011577 423 LYIQEGNHSPDKEDLARRVG---ITVEKLERLIFITRMPLSM 461 (482)
Q Consensus 423 eL~~e~gr~pS~eEIAe~LG---IS~etVk~~L~~ar~~lSL 461 (482)
.+....++..|.+|||+.++ ++..+|+..+...+..+..
T Consensus 156 ~l~~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~ 197 (220)
T 1p2f_A 156 FLAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIED 197 (220)
T ss_dssp HHHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCS
T ss_pred HHHHCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhc
Confidence 34455565689999999999 9999999999887766554
No 305
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=24.53 E-value=52 Score=28.32 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=25.9
Q ss_pred HHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 415 SKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 415 ~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
.+|.++..++ ...+....|.++||+..||+.+++-.
T Consensus 12 ~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 48 (193)
T 2dg8_A 12 ERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTY 48 (193)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHH
T ss_pred HHHHHHHHHHHHHhChhhccHHHHHHHhCCCchhhhe
Confidence 3444444454 44454578999999999999998854
No 306
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=24.51 E-value=1e+02 Score=26.59 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhcC-CCCcHHHHHHHhCCCHHHHHHH
Q 011577 411 YTLLSKVLEAKRLYIQEGN-HSPDKEDLARRVGITVEKLERL 451 (482)
Q Consensus 411 ~e~l~kI~ka~~eL~~e~g-r~pS~eEIAe~LGIS~etVk~~ 451 (482)
.....+|-++..++..+.| ...|..+||+..||+.+++-..
T Consensus 16 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 57 (218)
T 3gzi_A 16 TQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYY 57 (218)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHHH
Confidence 3445566666666655544 5789999999999999998654
No 307
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=24.29 E-value=81 Score=28.25 Aligned_cols=36 Identities=11% Similarity=0.297 Sum_probs=26.2
Q ss_pred HHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 415 SKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 415 ~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
.+|-++..++ ...+....|.++||+..||+.+++-.
T Consensus 10 ~~Il~AA~~lF~e~G~~~ts~~~IA~~AGvs~~tlY~ 46 (235)
T 2fbq_A 10 ERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNY 46 (235)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHH
Confidence 3454554554 44555688999999999999998854
No 308
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=24.24 E-value=84 Score=25.20 Aligned_cols=37 Identities=19% Similarity=0.055 Sum_probs=27.8
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHHcC----CCccCccc
Q 011577 428 GNHSPDKEDLARRVGITVEKLERLIFITR----MPLSMQQP 464 (482)
Q Consensus 428 ~gr~pS~eEIAe~LGIS~etVk~~L~~ar----~~lSLD~~ 464 (482)
.....+.+.||+.+|++++.|...+...- -.-++|++
T Consensus 27 ~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~ 67 (84)
T 1ufm_A 27 LYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 67 (84)
T ss_dssp SCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETT
T ss_pred hcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCC
Confidence 33478999999999999999999876442 23455554
No 309
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=24.19 E-value=65 Score=24.67 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=21.2
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHc
Q 011577 433 DKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 433 S~eEIAe~LGIS~etVk~~L~~a 455 (482)
+..++|+.||++...|...++..
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~~ 37 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKRG 37 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHHhc
Confidence 99999999999999999998654
No 310
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=24.18 E-value=1.2e+02 Score=28.28 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=22.0
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 429 NHSPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
.+-|+..|||+.+|+|..+|++++..
T Consensus 31 ~~lPse~~La~~~~vSr~tvr~Al~~ 56 (236)
T 3edp_A 31 MLMPNETALQEIYSSSRTTIRRAVDL 56 (236)
T ss_dssp C--CCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 34679999999999999999999874
No 311
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=24.15 E-value=93 Score=25.27 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=21.1
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHH
Q 011577 430 HSPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+..|.+++|+.+||+..+|..+..
T Consensus 48 ~glsq~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 48 PTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 368999999999999999988765
No 312
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.09 E-value=83 Score=28.06 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 413 LLSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 413 ~l~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
...+|-++..++ ..++....|..+||+..|++..++-.
T Consensus 17 ~r~~il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~ 55 (216)
T 2oi8_A 17 VRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALYR 55 (216)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHHHH
Confidence 334454544454 45555678999999999999988743
No 313
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=24.08 E-value=1.5e+02 Score=26.54 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.9
Q ss_pred CCcHHHHHHHhCCCH-HHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITV-EKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~-etVk~~L~~a 455 (482)
..|.++||..+|++. ++|-.++..-
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l 194 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKL 194 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHH
Confidence 479999999999999 7999888754
No 314
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=24.04 E-value=70 Score=25.20 Aligned_cols=24 Identities=8% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
..+..|||+.+|++..+|...+..
T Consensus 43 ~~~~~eLa~~l~is~~tv~~~L~~ 66 (96)
T 1y0u_A 43 GRSEEEIMQTLSLSKKQLDYHLKV 66 (96)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 579999999999999999998874
No 315
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=24.03 E-value=1.1e+02 Score=28.43 Aligned_cols=35 Identities=9% Similarity=-0.029 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHH
Q 011577 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 419 ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
++...+...+...++.+++|+.+|++...+..+.+
T Consensus 173 ~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 173 KISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 33344455566678999999999999999988875
No 316
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=23.99 E-value=1.3e+02 Score=27.49 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=22.9
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 429 NHSPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
.+-|+..|||+.+|+|-.+|++++..
T Consensus 29 ~~LPsE~eLa~~~gVSR~tVReAL~~ 54 (239)
T 1hw1_A 29 TILPAERELSELIGVTRTTLREVLQR 54 (239)
T ss_dssp SBCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34569999999999999999999874
No 317
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=23.94 E-value=1.7e+02 Score=24.04 Aligned_cols=23 Identities=17% Similarity=-0.005 Sum_probs=21.0
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHc
Q 011577 433 DKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 433 S~eEIAe~LGIS~etVk~~L~~a 455 (482)
+..|||+.+|++..+|...+..-
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~L 74 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKL 74 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCCChhHHHHHHHHH
Confidence 99999999999999999988753
No 318
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=23.80 E-value=1.3e+02 Score=28.04 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=23.0
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 429 NHSPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
.+-|+..|||+.+|++..+|++++..
T Consensus 32 ~~lPse~~La~~~~vSr~tvr~Al~~ 57 (243)
T 2wv0_A 32 MPLPSEREYAEQFGISRMTVRQALSN 57 (243)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 34679999999999999999999874
No 319
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=23.73 E-value=97 Score=27.46 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHH-HhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011577 413 LLSKVLEAKRLYI-QEGNHSPDKEDLARRVGITVEKLERL 451 (482)
Q Consensus 413 ~l~kI~ka~~eL~-~e~gr~pS~eEIAe~LGIS~etVk~~ 451 (482)
...+|.++..++. ..+....|.++||+..||+.+++-..
T Consensus 41 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~ 80 (225)
T 2id3_A 41 IREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRR 80 (225)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHH
Confidence 3444555555554 44445789999999999999998553
No 320
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=23.70 E-value=1.7e+02 Score=26.88 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=21.6
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 432 PDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.|.++||..+|++.++|-.++..-
T Consensus 218 lt~~~lA~~lG~sr~tvsR~l~~L 241 (260)
T 3kcc_A 218 ITRQEIGQIVGCSRETVGRILKML 241 (260)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Confidence 589999999999999999998754
No 321
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=23.63 E-value=84 Score=26.43 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=24.4
Q ss_pred HHHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHH
Q 011577 415 SKVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 415 ~kI~ka~~e-L~~e~gr~pS~eEIAe~LGIS~etV 448 (482)
.+|-++..+ +...+....|.++||+..|++.+++
T Consensus 10 ~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~tl 44 (180)
T 2fd5_A 10 ARILGAATQALLERGAVEPSVGEVMGAAGLTVGGF 44 (180)
T ss_dssp HHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCccHH
Confidence 344444444 4455556889999999999998776
No 322
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=23.58 E-value=2.5e+02 Score=23.18 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=28.5
Q ss_pred HHHHHHHhhhCCCCcHHHHHHHhcCCHHHHHHHHhh
Q 011577 290 KEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325 (482)
Q Consensus 290 ~~~~~l~~~~g~~pt~~ewA~a~gmdd~eLi~~l~~ 325 (482)
++..-+...++.+++..++|+.+|++...|.+.++.
T Consensus 15 ~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 15 SILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp HHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344445667778899999999999999988877765
No 323
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=23.29 E-value=54 Score=28.86 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=24.0
Q ss_pred HHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 414 LSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 414 l~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
..+|-++..++ ...+....|.++||+..||+.+++-.
T Consensus 26 r~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvskgtlY~ 63 (214)
T 2oer_A 26 VASILEAAVQVLASEGAQRFTTARVAERAGVSIGSLYQ 63 (214)
T ss_dssp HHHHHHHHHHC------CCCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccccHHHHHHHhCCCCchHHH
Confidence 34454554454 44455678999999999999999854
No 324
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=23.22 E-value=41 Score=28.92 Aligned_cols=38 Identities=24% Similarity=0.168 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 413 LLSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 413 ~l~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
.-.+|-++..++ ...+....|..+||+..||+.+++-.
T Consensus 19 ~R~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~ 57 (212)
T 3loc_A 19 KKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLY 57 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHhh
Confidence 334455555554 44444578999999999999999854
No 325
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=23.17 E-value=42 Score=28.64 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011577 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 417 I~ka~~eL~~e~gr~pS~eEIAe~LGIS~etV 448 (482)
+..+...+...+....|.++||+..||+.+++
T Consensus 17 l~aA~~lf~~~G~~~~ti~~IA~~agvs~~t~ 48 (204)
T 3eup_A 17 IESTAPVFNVKGLAGTSLTDLTEATNLTKGSI 48 (204)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHcCcccCCHHHHHHHhCCCcHHH
No 326
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=23.13 E-value=73 Score=26.67 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=22.6
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 429 NHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
....++++||+.+|++...+..+.+..
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~ 117 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKAT 117 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 447899999999999998888877643
No 327
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=22.96 E-value=87 Score=28.60 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011577 412 TLLSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLERL 451 (482)
Q Consensus 412 e~l~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~~ 451 (482)
....+|.++..+| ...+....|+.+||+..||+.+++-..
T Consensus 48 ~tr~~Il~AA~~lf~e~G~~~~Ti~~IA~~AGvs~~t~Y~y 88 (260)
T 2of7_A 48 RTREAIRAATYGLIRQQGYEATTVEQIAERAEVSPSTVLRY 88 (260)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccHHHHHHHhCCChHHHHHH
Confidence 3344555555555 444556789999999999999998554
No 328
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.92 E-value=67 Score=28.25 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=25.8
Q ss_pred HHHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 415 SKVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 415 ~kI~ka~~e-L~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
.+|-++..+ +..++....|.++||+..|++.+++-.
T Consensus 12 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~ 48 (209)
T 2gfn_A 12 RALADAVLALIAREGISAVTTRAVAEESGWSTGVLNH 48 (209)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHHCCCcchHHh
Confidence 344444444 455555678999999999999999854
No 329
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=22.89 E-value=41 Score=28.53 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=19.6
Q ss_pred HHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHH
Q 011577 415 SKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 415 ~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etV 448 (482)
.+|-.+..++ ...+....|.++||+..||+.+++
T Consensus 15 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~ 49 (199)
T 3on2_A 15 RVLLARAESTLEKDGVDGLSLRQLAREAGVSHAAP 49 (199)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHTC-----C
T ss_pred HHHHHHHHHHHHhcChhhhhHHHHHHHhCCChHHH
Confidence 3444444444 444555789999999999998776
No 330
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=22.81 E-value=1.3e+02 Score=28.00 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHh-cCCCCcHHHHHHHhCCCHHHHHH
Q 011577 413 LLSKVLEAKRLYIQE-GNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 413 ~l~kI~ka~~eL~~e-~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
...+|.++..++..+ +....|.++||+..||+.+++-.
T Consensus 42 tr~~Il~AA~~lf~e~G~~~~S~~~IA~~AGVs~~tlY~ 80 (273)
T 3c07_A 42 TRALILETAMRLFQERGYDRTTMRAIAQEAGVSVGNAYY 80 (273)
T ss_dssp HHHHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccccCHHHHHHHHCCCHHHHHH
Confidence 344555555555444 44678999999999999999854
No 331
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=22.68 E-value=61 Score=28.17 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.+|.++||..+|++.++|-.++..-
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l 188 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSL 188 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHH
Confidence 3699999999999999999988754
No 332
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=22.58 E-value=58 Score=27.50 Aligned_cols=25 Identities=8% Similarity=0.108 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|..++..-
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~L 82 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSL 82 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 6899999999999999999988754
No 333
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=22.56 E-value=1.4e+02 Score=28.56 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=23.6
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 428 GNHSPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 428 ~gr~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
+.+-|+..|||+.+|++..+|++++..
T Consensus 50 g~~lPse~~La~~~~vSr~tvr~Al~~ 76 (272)
T 3eet_A 50 HTRLPSQARIREEYGVSDTVALEARKV 76 (272)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 345679999999999999999999874
No 334
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=22.54 E-value=1.2e+02 Score=27.53 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=22.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|...+..-
T Consensus 33 ~~s~~eLA~~lglS~stv~~~l~~L 57 (192)
T 1uly_A 33 EMTISQLSEILGKTPQTIYHHIEKL 57 (192)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6899999999999999999988743
No 335
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=22.47 E-value=17 Score=36.63 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=46.0
Q ss_pred cCCCCCHhHHHHHH-HHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHH-HHHhcCCcccchhHHHHHHHHHHHHHHHHH
Q 011577 349 QGRGISLHDLLQEG-SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKA-IFQHSRTIRLPENIYTLLSKVLEAKRLYIQ 426 (482)
Q Consensus 349 ~~~g~d~EDLIQEG-~IGLirAiekFDp~kG~rFSTYA~~wIRnaI~~~-Lrkq~r~irlP~~v~e~l~kI~ka~~eL~~ 426 (482)
...|.|.+|+++.. --++.+.+.. ....|..|....+...+... +.. + ..+.++...+..+..
T Consensus 231 lP~gkDpdd~l~~~G~~~~~~~i~~----~~~~~~~f~~~~~~~~~~~~~l~~-------~----~~~~~~~~~i~~i~~ 295 (329)
T 4edg_A 231 LPSGMDPDEYIGKYGNDAFTTFVKN----DKKSFAHYKVSILKDEIAHNDLSY-------E----RYLKELSHDISLMKS 295 (329)
T ss_dssp CCTTCCHHHHHHHHCHHHHHHHHHH----CCEEHHHHHHHHTHHHHHHCHHHH-------H----HHHHHHHHHHHHCCC
T ss_pred CCCCCCHHHHHHHhCHHHHHHHHHh----cCCCHHHHHHHHHHhhccCCCCcH-------H----HHHHHHHHHHHhCCC
Confidence 35689999999863 3333333211 11247777766555442111 110 1 222222222222111
Q ss_pred hcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 427 EGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 427 e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
...+..-.+++|+.+||+++.++..+...
T Consensus 296 ~~~r~~y~~~la~~~~i~~~~l~~~~~~~ 324 (329)
T 4edg_A 296 SILQQKAINDVAPFFNVSPEQLANEIQFN 324 (329)
T ss_dssp HHHHHHHHHHHGGGGTCCHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHhh
Confidence 11112246889999999999999887643
No 336
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=22.41 E-value=1.2e+02 Score=27.58 Aligned_cols=27 Identities=15% Similarity=0.333 Sum_probs=23.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcCC
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITRM 457 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~ 457 (482)
+.|.++||+.+|++...|.+++....-
T Consensus 52 G~t~eeiA~~lG~s~s~V~~~LrLl~L 78 (178)
T 1r71_A 52 GKKKGDIAKEIGKSPAFITQHVTLLDL 78 (178)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHGGGSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHcC
Confidence 469999999999999999999887653
No 337
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=22.39 E-value=1.2e+02 Score=26.42 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=26.6
Q ss_pred HHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011577 414 LSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLERL 451 (482)
Q Consensus 414 l~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~~ 451 (482)
..+|-++..++ ...+.. .|.++||+..|++.+++-..
T Consensus 14 r~~Il~aA~~lf~~~G~~-~s~~~IA~~agvs~~tiY~~ 51 (224)
T 1t33_A 14 KSQLIAAALAQFGEYGLH-ATTRDIAALAGQNIAAITYY 51 (224)
T ss_dssp HHHHHHHHHHHHHHHGGG-SCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcc-ccHHHHHHHhCCCHHHHHHh
Confidence 34454554454 455556 99999999999999998553
No 338
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=22.37 E-value=95 Score=26.47 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=19.9
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHH
Q 011577 430 HSPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
.+.|+.||++.+|+|..+|..+-+
T Consensus 57 ~G~SyreIa~~tG~StaTIsRv~r 80 (107)
T 3frw_A 57 DKRTYLDISEKTGASTATISRVNR 80 (107)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCccHHHHHHHHH
Confidence 457999999999999988866543
No 339
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=22.19 E-value=1.8e+02 Score=26.14 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=22.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+.++||..+|++.++|-.++..-
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L 217 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDL 217 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHH
Confidence 4599999999999999999998754
No 340
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=22.12 E-value=73 Score=28.73 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.3
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHH
Q 011577 430 HSPDKEDLARRVGITVEKLERLIF 453 (482)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~ 453 (482)
+..|..|||+.|||+..++.....
T Consensus 47 ~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 47 EKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHH
Confidence 357999999999999999988766
No 341
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=22.11 E-value=99 Score=27.36 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=26.3
Q ss_pred HHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 415 SKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 415 ~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
.+|-.+-.++ ...+....|..+||+..||+.+++..
T Consensus 17 ~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~~tlY~ 53 (208)
T 3v6g_A 17 QAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTY 53 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchhHHH
Confidence 3444544444 45555678999999999999998854
No 342
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=22.11 E-value=73 Score=27.75 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=26.0
Q ss_pred HHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 415 SKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 415 ~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
.+|.++..++ ..++-...|.++||+..|++.+++-.
T Consensus 15 ~~Il~aA~~l~~e~G~~~~s~~~IA~~agvs~~t~Y~ 51 (198)
T 3cjd_A 15 EKLIDLAEAQIEAEGLASLRARELARQADCAVGAIYT 51 (198)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHhCChhhcCHHHHHHHhCCCccHHHH
Confidence 3454555554 44455678999999999999998854
No 343
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=21.75 E-value=46 Score=28.33 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=23.7
Q ss_pred HHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHH
Q 011577 416 KVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLE 449 (482)
Q Consensus 416 kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk 449 (482)
+|-++..++ ...+....|..+||+..|++.+++-
T Consensus 7 ~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y 41 (189)
T 3geu_A 7 KIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLY 41 (189)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHHT
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHH
Confidence 344444444 4444456899999999999998873
No 344
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=21.64 E-value=49 Score=27.67 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcC-CCCcHHHHHHHhCCCHHHHHHH
Q 011577 415 SKVLEAKRLYIQEGN-HSPDKEDLARRVGITVEKLERL 451 (482)
Q Consensus 415 ~kI~ka~~eL~~e~g-r~pS~eEIAe~LGIS~etVk~~ 451 (482)
.+|-.+..++..+.| ...|..+||+..||+.+++-..
T Consensus 7 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 44 (170)
T 3egq_A 7 VRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYH 44 (170)
T ss_dssp HHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHHH
Confidence 445555555554444 4689999999999999998653
No 345
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=21.64 E-value=62 Score=31.88 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=13.9
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 011577 269 LLTADEEFELIAQIQDLI 286 (482)
Q Consensus 269 lLT~eEE~eL~~~Iq~l~ 286 (482)
|||+|+|++++++|..+.
T Consensus 1 LLTREgEI~IAKRIE~G~ 18 (339)
T 1sig_A 1 GSHMEGEIDIAKRIEDGI 18 (339)
T ss_dssp ---CCTHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHH
Confidence 799999999999999865
No 346
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=21.59 E-value=56 Score=28.53 Aligned_cols=37 Identities=8% Similarity=0.082 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHH-HhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 414 LSKVLEAKRLYI-QEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 414 l~kI~ka~~eL~-~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
..+|-++..++. ..+....|.++||+..||+.+++-.
T Consensus 30 r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~ 67 (215)
T 2qko_A 30 RAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASN 67 (215)
T ss_dssp HHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHH
T ss_pred HHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHH
Confidence 344555555554 4454678999999999999888754
No 347
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=21.55 E-value=48 Score=28.19 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=26.0
Q ss_pred HHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011577 415 SKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLERL 451 (482)
Q Consensus 415 ~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~~ 451 (482)
.+|-.+..++ ...+....|.++||+..||+.+++-..
T Consensus 17 ~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 54 (191)
T 4aci_A 17 QEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHH 54 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHHHHH
Confidence 3444444444 444445689999999999999998654
No 348
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=21.54 E-value=1.7e+02 Score=23.97 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=20.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
..+..+||+.+||+..+|..+++.
T Consensus 25 ~~~~~~~A~~~gvs~stl~~~~~~ 48 (131)
T 1hlv_A 25 DLRKGEIARRFNIPPSTLSTILKN 48 (131)
T ss_dssp TSCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCcHHHHHHHhCCCHHHHHHHHhc
Confidence 466779999999999999988764
No 349
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=21.36 E-value=1.3e+02 Score=28.30 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=23.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcC
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITR 456 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar 456 (482)
+.|.++||+.+|++..+|..++....
T Consensus 134 g~t~~~iA~~lG~s~~~V~~~l~l~~ 159 (230)
T 1vz0_A 134 GLTQEEVARRVGKARSTVANALRLLQ 159 (230)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHc
Confidence 46999999999999999999988753
No 350
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=21.35 E-value=1.1e+02 Score=26.66 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhcC-CCCcHHHHHHHhCCCHHHHHH
Q 011577 413 LLSKVLEAKRLYIQEGN-HSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 413 ~l~kI~ka~~eL~~e~g-r~pS~eEIAe~LGIS~etVk~ 450 (482)
...+|-++..++..+.| ...|.++||+..||+.+++-.
T Consensus 23 ~r~~Il~AA~~lf~e~G~~~~s~~~IA~~AGVsk~tlY~ 61 (207)
T 3bjb_A 23 RHVRMLEAAIELATEKELARVQMHEVAKRAGVAIGTLYR 61 (207)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHH
Confidence 34455566566555544 567999999999999999854
No 351
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=21.26 E-value=90 Score=27.21 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=20.4
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHH
Q 011577 432 PDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
.+..|||+.+|++..+|..++..
T Consensus 87 ~t~~eLa~~l~is~~tvs~~l~~ 109 (181)
T 2fbk_A 87 LRPTELSALAAISGPSTSNRIVR 109 (181)
T ss_dssp BCHHHHHHHCSCCSGGGSSHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Confidence 79999999999999998877664
No 352
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=21.26 E-value=1.3e+02 Score=21.56 Aligned_cols=28 Identities=11% Similarity=0.317 Sum_probs=22.9
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHcCCCccC
Q 011577 433 DKEDLARRVGITVEKLERLIFITRMPLSM 461 (482)
Q Consensus 433 S~eEIAe~LGIS~etVk~~L~~ar~~lSL 461 (482)
+..++|+.+|++..+|..+++- ...+++
T Consensus 15 s~~~~A~~lgis~~~vs~~~~~-~~~~~l 42 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVRA-GRSIEI 42 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT-TCCEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHcC-CCCCCe
Confidence 9999999999999999998863 334444
No 353
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=21.21 E-value=3.4e+02 Score=22.13 Aligned_cols=67 Identities=13% Similarity=0.049 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHH-HH-HHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 385 AYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAK-RL-YIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 385 A~~wIRnaI~~~Lrkq~r~irlP~~v~e~l~kI~ka~-~e-L~~e~gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+.-+|++.+.+++..-.. ...+..+...+..+.+.. .. |....| ...+.|+.|||+..++...++..
T Consensus 27 l~~~v~~~l~~~~~~L~g-~~~~~~l~~~l~~~Er~~I~~aL~~~~g---n~~~AA~~LGIsR~TL~rkLkk~ 95 (98)
T 1eto_A 27 LRDSVKQALKNYFAQLNG-QDVNDLYELVLAEVEQPLLDMVMQYTLG---NQTRAALMMGINRGTLRKKLKKY 95 (98)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCCSCHHHHHHHHHHHHHHHHHHHHTTT---CHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccC-CCCcchHHHHHHHHHHHHHHHHHHHhCC---CHHHHHHHhCCCHHHHHHHHHHh
Confidence 445677777777654332 122222333333333322 12 222333 67899999999999999888753
No 354
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=21.02 E-value=49 Score=28.07 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=25.8
Q ss_pred HHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011577 415 SKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLERL 451 (482)
Q Consensus 415 ~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~~ 451 (482)
.+|-++..++ ...+....|.++||+..|++.+++-..
T Consensus 10 ~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~ 47 (186)
T 2jj7_A 10 ENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYY 47 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCHHHHHHHhCCChhhhhhh
Confidence 3444444444 444444689999999999999998653
No 355
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=21.01 E-value=68 Score=28.24 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 431 SPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
..|++|+|+.+||+.+.++.-+.+
T Consensus 95 adTleeLA~~~gid~~~L~~TV~~ 118 (160)
T 2lfc_A 95 KGSLESAAEQAGIVVDELVQTVKN 118 (160)
T ss_dssp CSSHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHH
Confidence 459999999999999988877653
No 356
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=21.01 E-value=71 Score=27.93 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.6
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 432 PDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
+|.++||..+|++.++|..++..-
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L 170 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGEL 170 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Confidence 589999999999999999988754
No 357
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=20.89 E-value=1.5e+02 Score=26.00 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=26.7
Q ss_pred HHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 414 LSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 414 l~kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
..+|-++..++ ...+....|.++||+..||+.+++-.
T Consensus 30 r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~ 67 (217)
T 3hta_A 30 RQRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGSTTY 67 (217)
T ss_dssp HHHHHHHHHHHHHHHTGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHcCCCcchhhh
Confidence 44455555554 44444578999999999999999854
No 358
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=20.77 E-value=1.3e+02 Score=26.40 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=16.9
Q ss_pred cHHHHHHHhCCCHHHHHHHHHH
Q 011577 433 DKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 433 S~eEIAe~LGIS~etVk~~L~~ 454 (482)
|..|+|+.+|++..+|..+...
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 7888888888888887777663
No 359
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=20.71 E-value=1.7e+02 Score=26.45 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=23.3
Q ss_pred cCCCCcHHHHHHHhC--CCHHHHHHHHHH
Q 011577 428 GNHSPDKEDLARRVG--ITVEKLERLIFI 454 (482)
Q Consensus 428 ~gr~pS~eEIAe~LG--IS~etVk~~L~~ 454 (482)
.+...+.++||+.+| ++...|+.++..
T Consensus 19 ~~~pvs~~~La~~~~~~~~~~~v~~~l~~ 47 (162)
T 1t6s_A 19 SEEPVNLQTLSQITAHKFTPSELQEAVDE 47 (162)
T ss_dssp CSSCBCHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHhCcCCCHHHHHHHHHH
Confidence 465789999999999 999999988763
No 360
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=20.71 E-value=1.4e+02 Score=23.67 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=22.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|...+..-
T Consensus 34 ~~~~~ela~~l~is~~tv~~~l~~L 58 (114)
T 2oqg_A 34 DQSASSLATRLPVSRQAIAKHLNAL 58 (114)
T ss_dssp CBCHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5799999999999999999988753
No 361
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=20.64 E-value=1.3e+02 Score=27.96 Aligned_cols=27 Identities=7% Similarity=0.251 Sum_probs=23.4
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 428 GNHSPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 428 ~gr~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
.+...+..|||+.+|++..+|..++..
T Consensus 20 ~~~~~~~~ela~~~gl~~stv~r~l~~ 46 (249)
T 1mkm_A 20 NPGDVSVSEIAEKFNMSVSNAYKYMVV 46 (249)
T ss_dssp CSSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344689999999999999999999874
No 362
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=20.63 E-value=81 Score=27.75 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=25.3
Q ss_pred HHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011577 416 KVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (482)
Q Consensus 416 kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etVk~ 450 (482)
+|.++..++ ...+....|.++||+..||+.+++-.
T Consensus 9 ~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~ 44 (228)
T 3nnr_A 9 KILLSSLELFNDKGERNITTNHIAAHLAISPGNLYY 44 (228)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHhChhhcCHHHHHHHhCCCCccchh
Confidence 444444444 44444578999999999999999854
No 363
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=20.57 E-value=1e+02 Score=29.58 Aligned_cols=27 Identities=11% Similarity=0.198 Sum_probs=21.5
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 428 GNHSPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 428 ~gr~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
.+...+..|||+.+|++..++..++..
T Consensus 42 ~~~~ltl~eia~~lgl~ksTv~RlL~t 68 (275)
T 3mq0_A 42 SPRDLTAAELTRFLDLPKSSAHGLLAV 68 (275)
T ss_dssp CSSCEEHHHHHHHHTCC--CHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344689999999999999999999874
No 364
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=20.56 E-value=87 Score=28.82 Aligned_cols=25 Identities=4% Similarity=0.134 Sum_probs=22.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
.++..+||+.||++..+|..++.+-
T Consensus 20 ~~~~~~lA~~l~vs~~tvs~~l~~L 44 (214)
T 3hrs_A 20 KITNKEIAQLMQVSPPAVTEMMKKL 44 (214)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhHHHHHHHHH
Confidence 6899999999999999999998754
No 365
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=20.46 E-value=1.2e+02 Score=23.25 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=22.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..|||+.+|++..+|...+..-
T Consensus 30 ~~~~~ela~~l~is~~tvs~~l~~L 54 (100)
T 1ub9_A 30 KAPFSQIQKVLDLTPGNLDSHIRVL 54 (100)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5799999999999999999988754
No 366
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=20.45 E-value=99 Score=28.13 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011577 412 TLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (482)
Q Consensus 412 e~l~kI~ka~~eL~~e~gr~pS~eEIAe~LGIS~etVk~~L~~ 454 (482)
+.+-..++.+-++.. .| ..+.-+||+.||+|-+.+.-.+..
T Consensus 7 d~v~erk~~ILE~Lk-~G-~~~t~~Iak~LGlShg~aq~~Ly~ 47 (165)
T 2vxz_A 7 REVLVRLRDILALLA-DG-CKTTSLIQQRLGLSHGRAKALIYV 47 (165)
T ss_dssp HHHHHHHHHHHHHHT-TC-CEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hC-CccHHHHHHHhCCcHHHHHHHHHH
Confidence 333344444455554 55 679999999999999999998763
No 367
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=20.44 E-value=1.5e+02 Score=27.70 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=26.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHcCCCccC
Q 011577 431 SPDKEDLARRVGITVEKLERLIFITRMPLSM 461 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSL 461 (482)
..+.+|||+.+||+...|..++..++-+..|
T Consensus 42 ~~~Q~~lA~~~giS~a~VSR~L~~A~LP~~l 72 (189)
T 3mky_B 42 AGNISALADAENISRKIITRCINTAKLPKSV 72 (189)
T ss_dssp TTCHHHHHHHHTSCHHHHHHHHHHHHSCHHH
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHhcCCHHH
Confidence 5799999999999999999999988765433
No 368
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=20.39 E-value=46 Score=28.52 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=23.6
Q ss_pred HHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHH
Q 011577 416 KVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKL 448 (482)
Q Consensus 416 kI~ka~~eL-~~e~gr~pS~eEIAe~LGIS~etV 448 (482)
+|-.+-.++ ...+....|..+||+..||+.+++
T Consensus 11 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tl 44 (178)
T 4hku_A 11 IILNMAEKIIYEKGMEKTTLYDIASNLNVTHAAL 44 (178)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGG
T ss_pred HHHHHHHHHHHHhCcccccHHHHHHHhCcCHhHH
Confidence 344444444 444546789999999999998877
No 369
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=20.36 E-value=4.5e+02 Score=23.25 Aligned_cols=29 Identities=7% Similarity=-0.024 Sum_probs=24.1
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHHcC
Q 011577 428 GNHSPDKEDLARRVGITVEKLERLIFITR 456 (482)
Q Consensus 428 ~gr~pS~eEIAe~LGIS~etVk~~L~~ar 456 (482)
.+...+.+||++..|+++.++++..+...
T Consensus 162 ~~~~~t~~ei~~~~~vs~~ti~~~~~~l~ 190 (200)
T 1ais_B 162 EGEKRTQREVAEVARVTEVTVRNRYKELV 190 (200)
T ss_dssp TTCCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45466999999999999999999877543
No 370
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=20.15 E-value=1e+02 Score=25.92 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=24.5
Q ss_pred HHHhcCCCCcHHHHHHHh--CCCHHHHHHHHHH
Q 011577 424 YIQEGNHSPDKEDLARRV--GITVEKLERLIFI 454 (482)
Q Consensus 424 L~~e~gr~pS~eEIAe~L--GIS~etVk~~L~~ 454 (482)
+....+ ..+..|||+.+ |++...|...++.
T Consensus 21 ~L~~~g-~~s~~eLA~~l~~giS~~aVs~rL~~ 52 (111)
T 3b73_A 21 IIHEEG-NGSPKELEDRDEIRISKSSVSRRLKK 52 (111)
T ss_dssp HHHHHS-CBCHHHHHTSTTCCSCHHHHHHHHHH
T ss_pred HHHHcC-CCCHHHHHHHHhcCCCHHHHHHHHHH
Confidence 333444 68999999999 9999999999874
No 371
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=20.02 E-value=1.7e+02 Score=27.19 Aligned_cols=25 Identities=8% Similarity=0.182 Sum_probs=22.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHc
Q 011577 431 SPDKEDLARRVGITVEKLERLIFIT 455 (482)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (482)
..+..+||+.+|+|-..|++++..-
T Consensus 51 ~L~e~~La~~lgVSRtpVREAL~~L 75 (239)
T 2hs5_A 51 RLSEPDICAALDVSRNTVREAFQIL 75 (239)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHH
T ss_pred EeCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4489999999999999999998853
Done!