Query 011578
Match_columns 482
No_of_seqs 514 out of 3798
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 02:55:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 2.9E-42 6.3E-47 315.0 15.2 236 202-479 147-394 (406)
2 KOG0730 AAA+-type ATPase [Post 100.0 1.2E-39 2.7E-44 319.2 16.8 241 200-480 428-677 (693)
3 KOG0738 AAA+-type ATPase [Post 100.0 5.1E-38 1.1E-42 288.9 15.1 246 203-481 209-473 (491)
4 KOG0733 Nuclear AAA ATPase (VC 100.0 7.5E-38 1.6E-42 302.3 15.6 251 201-480 506-772 (802)
5 CHL00181 cbbX CbbX; Provisiona 100.0 9.5E-35 2.1E-39 273.2 26.8 264 196-473 12-282 (287)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 4.6E-36 9.9E-41 290.0 16.3 217 203-453 187-416 (802)
7 TIGR02880 cbbX_cfxQ probable R 100.0 1.4E-34 3E-39 272.6 25.8 264 196-473 11-281 (284)
8 KOG4412 26S proteasome regulat 100.0 2E-36 4.3E-41 248.6 9.8 171 8-187 33-203 (226)
9 TIGR02881 spore_V_K stage V sp 100.0 1.1E-33 2.5E-38 265.0 25.2 253 203-470 3-261 (261)
10 KOG0736 Peroxisome assembly fa 100.0 6.4E-35 1.4E-39 288.9 15.5 245 203-480 669-935 (953)
11 COG1223 Predicted ATPase (AAA+ 100.0 1E-34 2.2E-39 253.5 14.6 233 202-479 117-357 (368)
12 KOG0727 26S proteasome regulat 100.0 1.2E-33 2.7E-38 245.8 12.4 236 202-479 151-398 (408)
13 KOG0734 AAA+-type ATPase conta 100.0 2.3E-33 5.1E-38 267.2 13.9 232 203-477 301-541 (752)
14 KOG0737 AAA+-type ATPase [Post 100.0 6.6E-33 1.4E-37 255.4 11.9 258 199-480 85-362 (386)
15 KOG0728 26S proteasome regulat 100.0 3.8E-32 8.3E-37 236.2 15.2 235 203-479 144-390 (404)
16 KOG0739 AAA+-type ATPase [Post 100.0 1.1E-32 2.4E-37 245.2 10.3 205 200-428 127-339 (439)
17 KOG0729 26S proteasome regulat 100.0 1.2E-32 2.6E-37 241.5 8.3 236 202-479 173-420 (435)
18 KOG0652 26S proteasome regulat 100.0 1.4E-31 2.9E-36 234.1 12.4 236 202-479 167-414 (424)
19 COG0464 SpoVK ATPases of the A 100.0 3E-31 6.4E-36 271.6 17.1 240 202-480 238-486 (494)
20 KOG4412 26S proteasome regulat 100.0 5.6E-32 1.2E-36 222.5 9.0 174 13-194 3-177 (226)
21 KOG0726 26S proteasome regulat 100.0 4.2E-32 9.2E-37 240.8 7.0 235 202-478 181-427 (440)
22 CHL00195 ycf46 Ycf46; Provisio 100.0 3.4E-30 7.3E-35 257.1 18.3 235 203-481 225-467 (489)
23 PTZ00454 26S protease regulato 100.0 3.4E-30 7.3E-35 252.0 16.8 236 202-479 141-388 (398)
24 KOG0735 AAA+-type ATPase [Post 100.0 1.6E-30 3.5E-35 255.5 14.0 216 203-451 664-888 (952)
25 TIGR01243 CDC48 AAA family ATP 100.0 3.2E-30 6.8E-35 274.7 17.1 246 202-480 449-713 (733)
26 KOG0731 AAA+-type ATPase conta 100.0 1.1E-29 2.4E-34 257.2 18.1 233 203-477 308-553 (774)
27 PRK03992 proteasome-activating 100.0 1.4E-29 3.1E-34 249.3 17.5 236 203-480 128-375 (389)
28 PTZ00361 26 proteosome regulat 100.0 4.3E-29 9.4E-34 245.4 16.3 235 203-479 180-426 (438)
29 TIGR03689 pup_AAA proteasome A 100.0 2E-28 4.3E-33 243.7 20.6 261 202-477 178-478 (512)
30 COG0465 HflB ATP-dependent Zn 100.0 2E-28 4.3E-33 244.2 15.7 235 201-478 145-391 (596)
31 KOG0741 AAA+-type ATPase [Post 100.0 3.4E-29 7.3E-34 238.7 7.9 220 236-480 249-493 (744)
32 TIGR01241 FtsH_fam ATP-depende 100.0 7E-28 1.5E-32 245.8 17.7 234 202-478 51-296 (495)
33 KOG0509 Ankyrin repeat and DHH 100.0 8.3E-29 1.8E-33 241.6 9.5 170 7-186 72-242 (600)
34 KOG0740 AAA+-type ATPase [Post 100.0 3.1E-28 6.7E-33 233.2 13.2 246 203-481 150-408 (428)
35 PHA02791 ankyrin-like protein; 100.0 4.6E-28 1E-32 227.1 13.6 164 9-185 26-223 (284)
36 KOG0651 26S proteasome regulat 99.9 5.1E-28 1.1E-32 217.0 9.6 233 204-478 130-374 (388)
37 PHA02859 ankyrin repeat protei 99.9 1.5E-27 3.3E-32 215.7 12.3 167 10-187 18-190 (209)
38 PHA02791 ankyrin-like protein; 99.9 4.1E-27 8.8E-32 220.7 13.4 143 23-180 9-152 (284)
39 TIGR01242 26Sp45 26S proteasom 99.9 8.9E-27 1.9E-31 229.0 15.8 233 203-477 119-363 (364)
40 CHL00176 ftsH cell division pr 99.9 3.2E-26 6.9E-31 235.7 20.2 232 203-477 180-423 (638)
41 PLN00020 ribulose bisphosphate 99.9 3.4E-26 7.3E-31 213.5 16.8 184 238-450 143-353 (413)
42 COG2256 MGS1 ATPase related to 99.9 1.9E-26 4.2E-31 215.0 13.8 213 202-479 20-240 (436)
43 KOG0732 AAA+-type ATPase conta 99.9 3.9E-26 8.4E-31 237.4 16.4 252 202-480 261-528 (1080)
44 PHA02875 ankyrin repeat protei 99.9 3.4E-26 7.4E-31 230.3 14.5 171 3-184 24-196 (413)
45 PHA02878 ankyrin repeat protei 99.9 3E-26 6.4E-31 234.5 13.8 171 10-186 34-265 (477)
46 KOG0509 Ankyrin repeat and DHH 99.9 2.4E-26 5.1E-31 224.5 11.8 163 14-186 45-208 (600)
47 KOG0730 AAA+-type ATPase [Post 99.9 9.3E-26 2E-30 222.0 13.8 228 206-481 184-420 (693)
48 PHA02875 ankyrin repeat protei 99.9 8.7E-26 1.9E-30 227.3 14.0 163 11-183 66-229 (413)
49 PHA02859 ankyrin repeat protei 99.9 1.8E-25 3.8E-30 202.3 14.3 149 8-165 46-202 (209)
50 PHA02874 ankyrin repeat protei 99.9 1.3E-25 2.7E-30 227.3 14.7 171 8-185 30-219 (434)
51 KOG0508 Ankyrin repeat protein 99.9 2E-25 4.4E-30 209.2 12.4 163 10-181 39-208 (615)
52 PHA02878 ankyrin repeat protei 99.9 3.4E-25 7.4E-30 226.7 15.3 156 13-180 168-325 (477)
53 TIGR01243 CDC48 AAA family ATP 99.9 5.5E-25 1.2E-29 234.6 17.3 246 203-481 175-439 (733)
54 PHA02716 CPXV016; CPX019; EVM0 99.9 1.4E-25 3E-30 232.5 12.3 174 10-191 174-401 (764)
55 PHA02946 ankyin-like protein; 99.9 3.5E-25 7.6E-30 222.6 14.0 170 7-186 66-239 (446)
56 PHA02874 ankyrin repeat protei 99.9 3.9E-25 8.5E-30 223.7 14.3 167 8-186 119-285 (434)
57 PRK10733 hflB ATP-dependent me 99.9 1.3E-24 2.9E-29 226.6 18.3 237 200-479 146-394 (644)
58 KOG0508 Ankyrin repeat protein 99.9 7.3E-25 1.6E-29 205.5 13.7 156 10-177 81-236 (615)
59 PHA03100 ankyrin repeat protei 99.9 1.7E-24 3.6E-29 222.6 15.0 173 3-186 95-280 (480)
60 PHA02716 CPXV016; CPX019; EVM0 99.9 1.9E-24 4.2E-29 224.1 15.0 174 3-182 201-429 (764)
61 PHA03100 ankyrin repeat protei 99.9 2.3E-24 5E-29 221.5 13.3 172 3-185 57-246 (480)
62 PHA02795 ankyrin-like protein; 99.9 4.3E-24 9.2E-29 207.7 13.6 168 9-184 112-290 (437)
63 KOG0510 Ankyrin repeat protein 99.9 4.5E-24 9.8E-29 212.5 11.7 166 9-184 221-405 (929)
64 PHA02798 ankyrin-like protein; 99.9 7.1E-24 1.5E-28 217.4 12.9 180 2-188 59-290 (489)
65 PF05496 RuvB_N: Holliday junc 99.9 1.1E-23 2.5E-28 184.5 12.2 185 203-445 21-226 (233)
66 PHA03095 ankyrin-like protein; 99.9 2.8E-23 6.1E-28 213.0 17.0 169 10-185 80-286 (471)
67 PHA02876 ankyrin repeat protei 99.9 1.1E-23 2.3E-28 225.0 14.1 171 11-185 271-472 (682)
68 PHA02946 ankyin-like protein; 99.9 2.2E-23 4.8E-28 209.6 15.5 170 3-183 94-270 (446)
69 PHA02989 ankyrin repeat protei 99.9 1.3E-23 2.8E-28 215.8 13.8 178 2-186 58-286 (494)
70 PHA02917 ankyrin-like protein; 99.9 2.2E-23 4.8E-28 217.5 15.1 175 5-182 24-256 (661)
71 PHA02798 ankyrin-like protein; 99.9 2.3E-23 5E-28 213.6 14.8 171 2-183 97-318 (489)
72 KOG0744 AAA+-type ATPase [Post 99.9 4.8E-23 1E-27 186.1 14.7 257 198-476 134-413 (423)
73 PHA03095 ankyrin-like protein; 99.9 1.9E-23 4.1E-28 214.2 13.6 172 8-187 42-220 (471)
74 KOG0512 Fetal globin-inducing 99.9 2.8E-23 6.1E-28 169.9 11.6 143 12-162 62-205 (228)
75 CHL00206 ycf2 Ycf2; Provisiona 99.9 2.1E-23 4.5E-28 226.2 13.3 199 237-478 1624-1878(2281)
76 PHA02989 ankyrin repeat protei 99.9 2.9E-23 6.3E-28 213.2 13.7 168 2-180 96-313 (494)
77 PHA02876 ankyrin repeat protei 99.9 3.6E-23 7.9E-28 220.9 14.0 164 12-185 239-404 (682)
78 PLN03192 Voltage-dependent pot 99.9 2.7E-23 5.7E-28 224.9 13.1 166 8-186 520-685 (823)
79 KOG0502 Integral membrane anky 99.9 6.1E-23 1.3E-27 174.4 12.3 157 9-178 125-281 (296)
80 PHA02743 Viral ankyrin protein 99.9 7.2E-23 1.6E-27 178.3 11.7 139 10-157 17-163 (166)
81 KOG2028 ATPase related to the 99.9 1.5E-22 3.3E-27 185.5 14.0 223 203-476 135-367 (554)
82 KOG0514 Ankyrin repeat protein 99.9 7.5E-23 1.6E-27 186.3 9.6 160 9-179 264-430 (452)
83 PHA02741 hypothetical protein; 99.9 2.8E-22 6E-27 175.5 10.6 134 42-181 16-157 (169)
84 KOG0510 Ankyrin repeat protein 99.9 2.4E-22 5.2E-27 200.3 10.7 145 8-160 268-415 (929)
85 PHA02741 hypothetical protein; 99.9 8E-22 1.7E-26 172.5 11.4 132 8-148 16-158 (169)
86 KOG0502 Integral membrane anky 99.9 2E-22 4.3E-27 171.3 6.5 166 7-185 90-255 (296)
87 KOG0195 Integrin-linked kinase 99.9 9.7E-23 2.1E-27 179.9 4.4 155 18-182 5-159 (448)
88 COG2255 RuvB Holliday junction 99.9 1.6E-20 3.4E-25 167.6 17.8 172 202-424 22-214 (332)
89 KOG0505 Myosin phosphatase, re 99.9 1.4E-21 3E-26 187.2 11.9 151 7-163 67-272 (527)
90 PHA02736 Viral ankyrin protein 99.9 5.9E-22 1.3E-26 170.9 7.6 133 8-149 12-153 (154)
91 KOG4177 Ankyrin [Cell wall/mem 99.9 9.6E-22 2.1E-26 207.8 10.3 160 12-182 473-632 (1143)
92 PHA02743 Viral ankyrin protein 99.9 6.8E-22 1.5E-26 172.2 7.6 140 37-186 10-158 (166)
93 PHA02795 ankyrin-like protein; 99.9 7.3E-21 1.6E-25 185.2 14.7 170 2-182 139-316 (437)
94 PLN03192 Voltage-dependent pot 99.8 7.4E-21 1.6E-25 206.0 14.5 143 7-161 552-695 (823)
95 KOG0505 Myosin phosphatase, re 99.8 4.2E-21 9E-26 184.0 9.6 169 13-192 40-267 (527)
96 PHA02884 ankyrin repeat protei 99.8 3.4E-20 7.5E-25 173.8 14.9 152 12-181 32-187 (300)
97 PHA02730 ankyrin-like protein; 99.8 2.1E-20 4.5E-25 190.6 13.2 172 7-186 35-232 (672)
98 PHA02736 Viral ankyrin protein 99.8 2.5E-21 5.4E-26 167.0 4.8 133 41-181 11-151 (154)
99 TIGR02639 ClpA ATP-dependent C 99.8 1.1E-19 2.3E-24 193.5 18.1 242 204-477 180-429 (731)
100 TIGR00763 lon ATP-dependent pr 99.8 2.1E-19 4.5E-24 192.3 20.3 240 199-475 312-584 (775)
101 KOG4177 Ankyrin [Cell wall/mem 99.8 5.2E-21 1.1E-25 202.3 7.8 174 7-191 434-608 (1143)
102 KOG0512 Fetal globin-inducing 99.8 2.6E-20 5.5E-25 152.7 9.7 120 51-177 66-185 (228)
103 COG0466 Lon ATP-dependent Lon 99.8 1.8E-19 3.9E-24 179.6 17.5 237 200-475 316-582 (782)
104 PRK13342 recombination factor 99.8 8.9E-20 1.9E-24 182.0 14.8 184 203-446 9-202 (413)
105 PRK05201 hslU ATP-dependent pr 99.8 4.8E-19 1E-23 169.9 19.0 163 306-478 249-433 (443)
106 PHA02730 ankyrin-like protein; 99.8 7E-20 1.5E-24 186.7 13.5 159 16-183 346-525 (672)
107 TIGR00390 hslU ATP-dependent p 99.8 7E-19 1.5E-23 168.7 19.1 163 306-478 247-431 (441)
108 PRK05342 clpX ATP-dependent pr 99.8 7.4E-19 1.6E-23 172.6 19.5 257 198-472 62-400 (412)
109 TIGR02902 spore_lonB ATP-depen 99.8 2.4E-19 5.2E-24 183.2 16.5 213 203-475 62-330 (531)
110 KOG2004 Mitochondrial ATP-depe 99.8 1.9E-19 4.1E-24 178.4 14.5 211 207-454 412-651 (906)
111 KOG0742 AAA+-type ATPase [Post 99.8 1.9E-19 4E-24 167.6 13.6 216 203-445 352-589 (630)
112 PRK13341 recombination factor 99.8 4.1E-19 8.8E-24 185.6 16.6 192 203-447 25-224 (725)
113 PHA02917 ankyrin-like protein; 99.8 1.5E-19 3.3E-24 188.8 13.2 156 15-181 105-301 (661)
114 COG0542 clpA ATP-binding subun 99.8 7.5E-19 1.6E-23 180.3 17.7 224 199-450 483-756 (786)
115 PHA02884 ankyrin repeat protei 99.8 1.3E-19 2.8E-24 169.9 11.0 124 43-175 28-156 (300)
116 TIGR00635 ruvB Holliday juncti 99.8 1.1E-18 2.4E-23 168.2 17.6 186 204-447 2-208 (305)
117 PRK00080 ruvB Holliday junctio 99.8 1.6E-18 3.4E-23 168.2 17.9 207 203-476 22-249 (328)
118 PRK11034 clpA ATP-dependent Cl 99.8 1.5E-18 3.3E-23 182.1 18.8 221 200-451 451-718 (758)
119 TIGR03345 VI_ClpV1 type VI sec 99.8 1.8E-18 3.9E-23 185.2 19.2 194 203-423 184-386 (852)
120 PRK10787 DNA-binding ATP-depen 99.8 3.9E-18 8.5E-23 180.5 18.8 238 197-475 312-580 (784)
121 PRK11034 clpA ATP-dependent Cl 99.8 4E-18 8.7E-23 179.0 18.5 237 205-477 185-433 (758)
122 TIGR00382 clpX endopeptidase C 99.8 6.9E-18 1.5E-22 164.7 18.7 259 198-471 68-405 (413)
123 KOG0989 Replication factor C, 99.8 1.7E-18 3.7E-23 156.3 12.7 191 203-446 33-236 (346)
124 PRK14956 DNA polymerase III su 99.8 6.5E-18 1.4E-22 166.2 16.6 189 203-447 15-229 (484)
125 PF12796 Ank_2: Ankyrin repeat 99.8 8.9E-19 1.9E-23 136.1 8.3 89 52-152 1-89 (89)
126 PTZ00322 6-phosphofructo-2-kin 99.8 1.5E-18 3.2E-23 182.7 12.0 102 50-159 84-192 (664)
127 PRK07003 DNA polymerase III su 99.8 1.4E-17 3E-22 169.7 18.5 190 203-448 13-228 (830)
128 KOG0195 Integrin-linked kinase 99.8 1.4E-18 3E-23 153.8 9.4 130 8-151 29-162 (448)
129 TIGR00870 trp transient-recept 99.8 1E-18 2.2E-23 188.4 10.1 125 47-180 127-281 (743)
130 PF00004 AAA: ATPase family as 99.8 1.3E-18 2.8E-23 146.0 8.6 122 246-379 1-132 (132)
131 COG3829 RocR Transcriptional r 99.8 2.6E-18 5.5E-23 167.3 11.3 205 202-446 241-477 (560)
132 KOG0507 CASK-interacting adapt 99.8 1E-18 2.2E-23 173.4 8.4 169 8-187 44-220 (854)
133 TIGR00870 trp transient-recept 99.8 1.6E-18 3.6E-23 186.7 10.7 95 83-181 126-242 (743)
134 COG1219 ClpX ATP-dependent pro 99.8 2.6E-17 5.7E-22 148.9 16.1 233 200-448 54-367 (408)
135 PRK14962 DNA polymerase III su 99.8 3.7E-17 8E-22 163.7 18.9 189 203-447 11-225 (472)
136 KOG0514 Ankyrin repeat protein 99.8 9.1E-19 2E-23 159.8 6.3 145 24-178 237-395 (452)
137 TIGR02639 ClpA ATP-dependent C 99.8 4.5E-17 9.7E-22 173.5 20.1 219 200-449 447-712 (731)
138 PLN03025 replication factor C 99.7 4.2E-17 9.1E-22 157.5 17.4 182 203-444 10-204 (319)
139 PRK14960 DNA polymerase III su 99.7 4.2E-17 9.2E-22 164.6 17.7 189 203-447 12-226 (702)
140 PRK12323 DNA polymerase III su 99.7 2.4E-17 5.1E-22 166.0 15.8 188 203-446 13-231 (700)
141 TIGR02974 phageshock_pspF psp 99.7 8.2E-18 1.8E-22 161.9 11.4 184 241-448 20-233 (329)
142 COG2204 AtoC Response regulato 99.7 7.8E-18 1.7E-22 164.5 11.2 207 204-449 139-375 (464)
143 COG1221 PspF Transcriptional r 99.7 1.4E-17 3.1E-22 159.8 12.3 208 202-448 74-309 (403)
144 PRK14964 DNA polymerase III su 99.7 8.4E-17 1.8E-21 160.3 17.8 189 203-447 10-224 (491)
145 PF12796 Ank_2: Ankyrin repeat 99.7 1.8E-17 3.8E-22 128.8 10.3 89 17-115 1-89 (89)
146 PRK14958 DNA polymerase III su 99.7 9.3E-17 2E-21 162.6 18.2 189 203-447 13-227 (509)
147 PRK14949 DNA polymerase III su 99.7 4.9E-17 1.1E-21 168.9 16.4 187 203-446 13-226 (944)
148 CHL00095 clpC Clp protease ATP 99.7 4.1E-17 8.9E-22 175.8 16.3 193 204-423 177-377 (821)
149 PRK06645 DNA polymerase III su 99.7 1.9E-16 4.2E-21 159.1 19.5 190 203-448 18-237 (507)
150 COG3604 FhlA Transcriptional r 99.7 3.1E-17 6.8E-22 157.6 12.9 210 200-448 217-456 (550)
151 PRK11608 pspF phage shock prot 99.7 2.8E-17 6E-22 158.5 12.3 207 204-448 4-240 (326)
152 TIGR01817 nifA Nif-specific re 99.7 2.1E-17 4.4E-22 170.9 11.1 205 204-448 194-428 (534)
153 KOG4214 Myotrophin and similar 99.7 2.6E-17 5.7E-22 120.5 8.3 105 14-125 3-107 (117)
154 PRK10865 protein disaggregatio 99.7 5.5E-17 1.2E-21 174.4 14.6 173 204-396 176-357 (857)
155 PRK14961 DNA polymerase III su 99.7 1.4E-16 3E-21 156.3 16.0 189 203-447 13-227 (363)
156 KOG3676 Ca2+-permeable cation 99.7 1.5E-17 3.3E-22 167.2 9.3 160 10-178 140-330 (782)
157 TIGR02903 spore_lon_C ATP-depe 99.7 8.9E-17 1.9E-21 166.8 14.9 222 203-476 151-429 (615)
158 TIGR03346 chaperone_ClpB ATP-d 99.7 4.6E-16 9.9E-21 168.1 20.7 218 206-451 565-828 (852)
159 PRK08691 DNA polymerase III su 99.7 2.8E-16 6E-21 160.3 17.7 189 203-447 13-227 (709)
160 TIGR03346 chaperone_ClpB ATP-d 99.7 1.4E-16 3.1E-21 172.0 16.4 191 204-421 171-370 (852)
161 PRK07994 DNA polymerase III su 99.7 3.2E-16 6.9E-21 160.7 17.4 188 203-447 13-227 (647)
162 PHA02792 ankyrin-like protein; 99.7 1.1E-16 2.4E-21 161.9 13.7 139 14-164 307-452 (631)
163 PRK14957 DNA polymerase III su 99.7 2.3E-16 5E-21 159.4 15.9 189 203-447 13-227 (546)
164 PHA02792 ankyrin-like protein; 99.7 3.9E-17 8.5E-22 165.0 9.9 168 2-178 26-239 (631)
165 KOG0507 CASK-interacting adapt 99.7 3.2E-17 6.9E-22 162.9 8.9 155 14-178 4-170 (854)
166 PRK14952 DNA polymerase III su 99.7 5E-16 1.1E-20 158.5 17.9 188 203-447 10-226 (584)
167 PRK14963 DNA polymerase III su 99.7 1E-15 2.2E-20 154.7 19.9 188 203-446 11-223 (504)
168 PRK05563 DNA polymerase III su 99.7 8.7E-16 1.9E-20 157.7 19.1 189 203-447 13-227 (559)
169 PRK12402 replication factor C 99.7 1E-15 2.3E-20 149.9 18.4 189 203-445 12-231 (337)
170 PRK14951 DNA polymerase III su 99.7 1E-15 2.2E-20 156.8 18.6 189 203-447 13-232 (618)
171 CHL00095 clpC Clp protease ATP 99.7 1.3E-15 2.8E-20 164.2 20.3 223 200-450 502-783 (821)
172 PRK15424 propionate catabolism 99.7 1.7E-16 3.7E-21 160.6 12.1 206 204-447 217-464 (538)
173 cd00204 ANK ankyrin repeats; 99.7 2.6E-16 5.6E-21 130.2 11.1 119 48-175 7-125 (126)
174 TIGR02329 propionate_PrpR prop 99.7 2.4E-16 5.2E-21 159.8 12.8 204 203-448 209-450 (526)
175 PRK04195 replication factor C 99.7 1.2E-15 2.7E-20 155.3 17.7 184 203-443 11-205 (482)
176 PRK07764 DNA polymerase III su 99.7 1E-15 2.2E-20 162.1 17.5 188 203-446 12-227 (824)
177 PRK14959 DNA polymerase III su 99.7 1.5E-15 3.3E-20 154.3 17.8 190 203-445 13-225 (624)
178 TIGR03345 VI_ClpV1 type VI sec 99.7 2.1E-15 4.5E-20 161.8 19.1 224 199-450 558-832 (852)
179 PRK14969 DNA polymerase III su 99.7 1.8E-15 3.9E-20 154.3 17.6 189 203-447 13-227 (527)
180 cd00204 ANK ankyrin repeats; 99.7 9.4E-16 2E-20 126.8 12.2 123 10-142 4-126 (126)
181 KOG4214 Myotrophin and similar 99.7 1.7E-16 3.7E-21 116.3 6.7 115 48-175 2-116 (117)
182 PRK11388 DNA-binding transcrip 99.7 3.2E-16 7E-21 165.6 11.6 205 204-448 323-554 (638)
183 TIGR03420 DnaA_homol_Hda DnaA 99.7 2.6E-15 5.6E-20 138.3 16.0 185 242-474 37-225 (226)
184 PRK05022 anaerobic nitric oxid 99.7 1.8E-15 3.9E-20 155.0 16.4 207 204-449 185-421 (509)
185 PRK10820 DNA-binding transcrip 99.7 6.1E-16 1.3E-20 158.4 12.4 208 202-448 200-437 (520)
186 PRK10865 protein disaggregatio 99.7 3.2E-15 7E-20 160.9 18.4 224 199-450 560-830 (857)
187 KOG0745 Putative ATP-dependent 99.7 2.3E-15 5.1E-20 141.6 14.8 194 244-450 227-510 (564)
188 PRK08451 DNA polymerase III su 99.6 6.2E-15 1.3E-19 148.3 18.6 190 203-448 11-226 (535)
189 PRK14965 DNA polymerase III su 99.6 4.6E-15 1E-19 153.1 18.0 190 203-448 13-228 (576)
190 PRK09111 DNA polymerase III su 99.6 5.6E-15 1.2E-19 151.7 18.3 188 203-446 21-239 (598)
191 PTZ00112 origin recognition co 99.6 1.3E-14 2.8E-19 148.8 20.0 223 206-477 755-1006(1164)
192 PHA02544 44 clamp loader, smal 99.6 4.3E-15 9.3E-20 144.0 15.8 179 203-424 18-200 (316)
193 PRK07133 DNA polymerase III su 99.6 1.1E-14 2.3E-19 150.3 19.3 188 203-446 15-225 (725)
194 TIGR02640 gas_vesic_GvpN gas v 99.6 1.4E-14 3E-19 135.7 18.3 193 242-478 20-258 (262)
195 PRK05896 DNA polymerase III su 99.6 5E-15 1.1E-19 149.8 16.3 189 203-447 13-227 (605)
196 TIGR02397 dnaX_nterm DNA polym 99.6 1.9E-14 4.2E-19 141.9 19.5 189 203-447 11-225 (355)
197 PRK15429 formate hydrogenlyase 99.6 5.3E-15 1.1E-19 157.3 16.1 207 203-448 373-609 (686)
198 PRK14955 DNA polymerase III su 99.6 6.3E-15 1.4E-19 146.2 15.2 189 203-447 13-235 (397)
199 TIGR02928 orc1/cdc6 family rep 99.6 3.5E-14 7.6E-19 140.6 20.4 229 206-478 15-275 (365)
200 COG1220 HslU ATP-dependent pro 99.6 2.5E-14 5.5E-19 130.8 17.5 160 308-477 252-433 (444)
201 COG2812 DnaX DNA polymerase II 99.6 5.4E-15 1.2E-19 146.8 14.2 196 203-448 13-228 (515)
202 PRK00411 cdc6 cell division co 99.6 7.1E-14 1.5E-18 139.9 22.3 229 206-479 30-284 (394)
203 PRK06647 DNA polymerase III su 99.6 1.6E-14 3.4E-19 147.9 17.5 188 203-446 13-226 (563)
204 PRK14953 DNA polymerase III su 99.6 2.8E-14 6E-19 143.9 18.9 189 203-447 13-227 (486)
205 PRK00440 rfc replication facto 99.6 7.1E-15 1.5E-19 142.9 13.9 188 203-446 14-209 (319)
206 PRK14970 DNA polymerase III su 99.6 2E-14 4.3E-19 142.1 17.1 188 203-446 14-215 (367)
207 PRK06305 DNA polymerase III su 99.6 2.3E-14 4.9E-19 143.6 17.3 188 203-446 14-228 (451)
208 PRK08903 DnaA regulatory inact 99.6 2E-14 4.3E-19 132.3 15.6 180 242-475 41-224 (227)
209 PRK14948 DNA polymerase III su 99.6 6.5E-14 1.4E-18 144.9 19.4 186 203-444 13-226 (620)
210 PRK14954 DNA polymerase III su 99.6 4.6E-14 1E-18 145.2 17.8 189 203-447 13-235 (620)
211 PF01078 Mg_chelatase: Magnesi 99.6 4.3E-16 9.4E-21 136.2 2.4 114 204-346 1-135 (206)
212 PRK13407 bchI magnesium chelat 99.6 8.1E-15 1.8E-19 140.0 11.3 160 204-394 6-217 (334)
213 PRK07940 DNA polymerase III su 99.6 7.1E-15 1.5E-19 144.0 11.1 159 204-391 3-187 (394)
214 KOG0743 AAA+-type ATPase [Post 99.6 8.1E-15 1.8E-19 140.1 11.1 173 203-396 198-386 (457)
215 COG0666 Arp FOG: Ankyrin repea 99.6 2.3E-14 5.1E-19 131.6 13.6 129 41-179 67-203 (235)
216 PRK08084 DNA replication initi 99.6 9.7E-14 2.1E-18 127.7 17.2 187 243-474 45-233 (235)
217 COG0606 Predicted ATPase with 99.6 2.9E-15 6.3E-20 144.3 7.3 154 202-384 175-383 (490)
218 KOG0991 Replication factor C, 99.6 1.3E-14 2.8E-19 125.9 10.6 173 203-422 24-203 (333)
219 COG0666 Arp FOG: Ankyrin repea 99.6 2.9E-14 6.2E-19 131.0 13.2 127 9-145 69-203 (235)
220 PRK12422 chromosomal replicati 99.6 1.1E-13 2.4E-18 138.2 17.3 174 243-446 141-319 (445)
221 PRK06893 DNA replication initi 99.6 9.4E-14 2E-18 127.4 15.5 185 244-475 40-228 (229)
222 PRK10923 glnG nitrogen regulat 99.6 1E-14 2.3E-19 149.2 10.0 205 205-448 137-371 (469)
223 COG0542 clpA ATP-binding subun 99.6 1.1E-13 2.4E-18 142.6 17.4 216 204-450 168-395 (786)
224 CHL00081 chlI Mg-protoporyphyr 99.6 5.5E-14 1.2E-18 134.5 14.1 160 203-393 14-232 (350)
225 PRK14950 DNA polymerase III su 99.6 9.7E-14 2.1E-18 144.1 17.1 188 203-446 13-227 (585)
226 TIGR00362 DnaA chromosomal rep 99.6 8.4E-14 1.8E-18 139.2 15.9 176 243-448 136-318 (405)
227 PRK14971 DNA polymerase III su 99.6 1.1E-13 2.4E-18 143.3 17.0 189 203-447 14-229 (614)
228 TIGR00368 Mg chelatase-related 99.5 1.2E-13 2.6E-18 139.2 16.5 153 204-385 190-396 (499)
229 PRK00149 dnaA chromosomal repl 99.5 7.9E-14 1.7E-18 141.1 14.5 177 243-447 148-329 (450)
230 COG3283 TyrR Transcriptional r 99.5 1E-13 2.2E-18 127.8 13.4 207 202-448 200-432 (511)
231 TIGR02915 PEP_resp_reg putativ 99.5 2.4E-14 5.2E-19 145.6 10.3 205 205-448 138-372 (445)
232 KOG0735 AAA+-type ATPase [Post 99.5 1.6E-13 3.4E-18 136.7 15.3 211 240-481 428-652 (952)
233 KOG0736 Peroxisome assembly fa 99.5 5.2E-14 1.1E-18 141.3 11.9 207 243-479 431-655 (953)
234 COG1474 CDC6 Cdc6-related prot 99.5 1.6E-12 3.6E-17 126.1 21.0 224 208-477 19-265 (366)
235 TIGR02442 Cob-chelat-sub cobal 99.5 1.1E-13 2.4E-18 144.8 12.5 231 205-478 3-305 (633)
236 TIGR02030 BchI-ChlI magnesium 99.5 2.6E-13 5.7E-18 130.0 13.5 230 205-477 3-309 (337)
237 PRK14088 dnaA chromosomal repl 99.5 5.5E-13 1.2E-17 133.6 15.8 177 243-447 130-312 (440)
238 TIGR01818 ntrC nitrogen regula 99.5 1.4E-13 3E-18 140.8 11.7 202 207-448 135-367 (463)
239 PRK08727 hypothetical protein; 99.5 2E-12 4.4E-17 118.9 18.2 186 244-476 42-230 (233)
240 PRK11361 acetoacetate metaboli 99.5 1E-13 2.2E-18 141.5 10.3 181 242-448 165-376 (457)
241 KOG0515 p53-interacting protei 99.5 7.1E-14 1.5E-18 133.5 8.2 100 52-159 554-654 (752)
242 KOG0515 p53-interacting protei 99.5 9E-14 2E-18 132.8 8.8 122 14-143 551-673 (752)
243 TIGR00764 lon_rel lon-related 99.5 3E-13 6.4E-18 140.1 13.4 149 301-478 212-392 (608)
244 smart00350 MCM minichromosome 99.5 8E-13 1.7E-17 135.2 16.1 242 207-479 204-506 (509)
245 PF13857 Ank_5: Ankyrin repeat 99.5 2.1E-14 4.5E-19 100.1 3.0 50 76-125 7-56 (56)
246 PF07724 AAA_2: AAA domain (Cd 99.5 1.3E-13 2.9E-18 119.6 8.5 109 242-355 2-130 (171)
247 PRK15115 response regulator Gl 99.5 1.6E-13 3.6E-18 139.4 10.5 182 242-448 156-367 (444)
248 KOG4369 RTK signaling protein 99.5 6.5E-14 1.4E-18 143.9 6.5 176 5-186 849-1057(2131)
249 PF13637 Ank_4: Ankyrin repeat 99.5 1.5E-13 3.4E-18 95.2 6.4 54 48-105 1-54 (54)
250 KOG3676 Ca2+-permeable cation 99.5 1.7E-13 3.7E-18 138.4 8.9 125 11-144 182-330 (782)
251 PF00158 Sigma54_activat: Sigm 99.5 2.3E-13 5.1E-18 117.7 8.6 104 241-359 20-148 (168)
252 PTZ00111 DNA replication licen 99.4 1.3E-12 2.8E-17 136.9 15.0 251 207-478 451-805 (915)
253 KOG1710 MYND Zn-finger and ank 99.4 2.5E-13 5.4E-18 120.7 8.2 121 11-141 10-131 (396)
254 PRK06620 hypothetical protein; 99.4 1.2E-12 2.6E-17 118.3 12.6 167 244-474 45-213 (214)
255 PTZ00322 6-phosphofructo-2-kin 99.4 5E-13 1.1E-17 141.1 11.7 106 15-126 84-196 (664)
256 PRK09862 putative ATP-dependen 99.4 7.7E-13 1.7E-17 132.6 12.1 151 204-383 189-391 (506)
257 PRK14086 dnaA chromosomal repl 99.4 2.3E-12 5E-17 130.7 15.4 175 244-446 315-494 (617)
258 KOG4369 RTK signaling protein 99.4 1.6E-13 3.4E-18 141.1 6.6 200 6-225 750-952 (2131)
259 PRK09087 hypothetical protein; 99.4 3.4E-12 7.3E-17 116.3 14.7 178 243-478 44-223 (226)
260 PRK14087 dnaA chromosomal repl 99.4 3.3E-12 7.2E-17 128.1 15.7 180 243-447 141-326 (450)
261 PRK05642 DNA replication initi 99.4 5.6E-12 1.2E-16 115.9 15.9 168 243-446 45-214 (234)
262 COG1224 TIP49 DNA helicase TIP 99.4 5.6E-12 1.2E-16 116.5 15.2 112 308-448 293-412 (450)
263 PF13637 Ank_4: Ankyrin repeat 99.4 1.5E-13 3.3E-18 95.3 3.7 54 85-142 1-54 (54)
264 PF13857 Ank_5: Ankyrin repeat 99.4 2.1E-13 4.6E-18 95.0 4.0 56 32-92 1-56 (56)
265 PF05673 DUF815: Protein of un 99.4 3.2E-11 6.9E-16 107.9 18.4 195 203-442 24-243 (249)
266 PRK09112 DNA polymerase III su 99.4 8.2E-12 1.8E-16 120.9 15.9 158 202-392 19-212 (351)
267 KOG1710 MYND Zn-finger and ank 99.4 8.5E-13 1.9E-17 117.3 7.4 122 48-178 12-134 (396)
268 PRK13531 regulatory ATPase Rav 99.4 1.9E-12 4.2E-17 127.3 10.5 150 207-392 21-193 (498)
269 PRK10365 transcriptional regul 99.4 1.5E-12 3.3E-17 132.3 10.2 183 241-448 160-372 (441)
270 TIGR01650 PD_CobS cobaltochela 99.3 2.2E-12 4.8E-17 121.4 8.5 136 243-393 64-233 (327)
271 PRK07399 DNA polymerase III su 99.3 1.4E-11 3.1E-16 117.6 13.6 157 204-393 2-195 (314)
272 KOG1051 Chaperone HSP104 and r 99.3 1.7E-11 3.6E-16 128.5 14.9 178 198-398 553-789 (898)
273 PRK07471 DNA polymerase III su 99.3 1.5E-11 3.3E-16 119.7 13.7 157 202-393 15-213 (365)
274 TIGR00602 rad24 checkpoint pro 99.3 1.4E-11 2.9E-16 126.9 13.5 212 203-446 81-329 (637)
275 TIGR03015 pepcterm_ATPase puta 99.3 4.8E-11 1E-15 113.0 16.4 203 243-478 43-267 (269)
276 PRK04132 replication factor C 99.3 3.1E-11 6.8E-16 127.4 15.9 160 244-446 565-737 (846)
277 PRK05564 DNA polymerase III su 99.3 4.2E-11 9.1E-16 115.5 15.6 153 204-393 2-165 (313)
278 PRK13765 ATP-dependent proteas 99.3 2.2E-11 4.8E-16 125.8 14.2 128 301-448 221-380 (637)
279 COG0464 SpoVK ATPases of the A 99.3 1.1E-11 2.4E-16 127.4 11.8 208 238-479 13-228 (494)
280 KOG0990 Replication factor C, 99.3 1.7E-11 3.8E-16 111.9 11.2 157 203-397 38-207 (360)
281 KOG2035 Replication factor C, 99.3 3.9E-11 8.4E-16 107.3 13.1 171 203-423 10-218 (351)
282 TIGR02031 BchD-ChlD magnesium 99.3 9.3E-12 2E-16 128.9 10.4 207 243-479 16-260 (589)
283 PHA02244 ATPase-like protein 99.3 1.7E-11 3.8E-16 116.5 10.4 124 242-384 118-265 (383)
284 PF07726 AAA_3: ATPase family 99.3 4.5E-13 9.6E-18 107.4 -0.3 109 245-371 1-129 (131)
285 PF06068 TIP49: TIP49 C-termin 99.3 1E-10 2.2E-15 110.1 14.8 94 308-424 280-381 (398)
286 TIGR00678 holB DNA polymerase 99.3 1.6E-11 3.5E-16 109.4 8.7 143 242-423 13-181 (188)
287 PF00308 Bac_DnaA: Bacterial d 99.3 2.4E-11 5.1E-16 110.4 9.8 174 244-446 35-214 (219)
288 KOG1969 DNA replication checkp 99.3 2.7E-10 5.9E-15 114.5 17.8 192 203-444 268-514 (877)
289 PRK11331 5-methylcytosine-spec 99.3 1.3E-10 2.8E-15 113.7 15.1 155 202-386 171-365 (459)
290 COG0470 HolB ATPase involved i 99.2 3.1E-11 6.8E-16 117.6 10.2 144 207-385 2-173 (325)
291 COG0714 MoxR-like ATPases [Gen 99.2 1.9E-11 4.2E-16 118.6 7.3 132 242-391 42-200 (329)
292 PRK08058 DNA polymerase III su 99.2 7.7E-11 1.7E-15 114.0 11.2 151 204-391 3-180 (329)
293 cd00009 AAA The AAA+ (ATPases 99.2 4E-11 8.7E-16 102.1 8.3 124 242-379 18-151 (151)
294 COG3284 AcoR Transcriptional a 99.2 3.1E-11 6.7E-16 120.5 8.4 175 242-448 335-540 (606)
295 smart00763 AAA_PrkA PrkA AAA d 99.2 8.6E-10 1.9E-14 105.2 17.3 102 306-427 236-353 (361)
296 PF07728 AAA_5: AAA domain (dy 99.2 5.4E-12 1.2E-16 106.7 1.9 108 245-371 1-139 (139)
297 COG0593 DnaA ATPase involved i 99.2 4.2E-10 9.1E-15 109.0 15.0 179 242-448 112-294 (408)
298 PF13177 DNA_pol3_delta2: DNA 99.2 1.3E-10 2.9E-15 100.3 10.0 136 210-381 1-162 (162)
299 PRK05707 DNA polymerase III su 99.2 1.7E-10 3.7E-15 110.8 11.7 131 242-392 21-177 (328)
300 PF14532 Sigma54_activ_2: Sigm 99.2 2.9E-11 6.3E-16 101.9 5.2 113 241-379 19-137 (138)
301 PF05621 TniB: Bacterial TniB 99.1 2E-09 4.4E-14 99.6 16.8 212 208-448 36-269 (302)
302 COG1239 ChlI Mg-chelatase subu 99.1 6E-10 1.3E-14 106.5 13.0 158 205-394 16-233 (423)
303 COG2607 Predicted ATPase (AAA+ 99.1 4.8E-09 1E-13 92.3 17.2 197 203-444 57-277 (287)
304 COG1241 MCM2 Predicted ATPase 99.1 5.7E-10 1.2E-14 114.6 12.0 242 206-478 286-593 (682)
305 KOG1514 Origin recognition com 99.1 1.1E-08 2.5E-13 102.9 19.4 206 245-478 424-656 (767)
306 PF00493 MCM: MCM2/3/5 family 99.0 1.2E-09 2.6E-14 105.6 10.8 240 207-478 25-327 (331)
307 PRK13406 bchD magnesium chelat 99.0 2.5E-09 5.5E-14 109.9 13.1 195 242-478 24-251 (584)
308 PRK06964 DNA polymerase III su 99.0 2.3E-09 5E-14 103.0 11.7 131 241-391 19-202 (342)
309 PRK08769 DNA polymerase III su 99.0 3.1E-09 6.8E-14 101.2 11.7 131 242-391 25-183 (319)
310 smart00382 AAA ATPases associa 99.0 1.2E-09 2.7E-14 92.1 7.9 77 243-323 2-95 (148)
311 KOG1942 DNA helicase, TBP-inte 99.0 4.3E-09 9.4E-14 95.0 11.2 94 307-423 297-399 (456)
312 PRK06871 DNA polymerase III su 99.0 3.2E-09 6.9E-14 101.3 10.2 129 242-392 23-178 (325)
313 PRK07993 DNA polymerase III su 99.0 4.2E-09 9.2E-14 101.5 11.2 129 242-391 23-178 (334)
314 KOG0741 AAA+-type ATPase [Post 99.0 3.7E-09 7.9E-14 102.7 10.6 136 241-391 536-684 (744)
315 PRK06090 DNA polymerase III su 98.9 5E-09 1.1E-13 99.7 10.4 129 242-391 24-178 (319)
316 PRK08699 DNA polymerase III su 98.9 3.3E-09 7.1E-14 101.8 7.5 133 242-391 20-183 (325)
317 KOG0480 DNA replication licens 98.9 4.2E-08 9E-13 97.6 15.1 246 204-479 343-645 (764)
318 PRK08116 hypothetical protein; 98.9 2.9E-08 6.3E-13 93.0 13.3 133 243-391 114-258 (268)
319 PF13606 Ank_3: Ankyrin repeat 98.9 2.3E-09 5E-14 63.6 3.7 28 85-112 2-29 (30)
320 KOG0783 Uncharacterized conser 98.9 6.6E-10 1.4E-14 112.1 2.0 98 24-126 28-127 (1267)
321 KOG2170 ATPase of the AAA+ sup 98.9 4.4E-08 9.5E-13 89.2 13.0 123 198-342 73-203 (344)
322 KOG2227 Pre-initiation complex 98.9 9.1E-08 2E-12 92.3 15.6 163 207-397 151-342 (529)
323 KOG0478 DNA replication licens 98.8 3.3E-08 7.1E-13 99.1 11.7 241 207-477 430-724 (804)
324 PF00023 Ank: Ankyrin repeat H 98.8 6.7E-09 1.4E-13 63.6 4.0 31 85-115 2-32 (33)
325 KOG2680 DNA helicase TIP49, TB 98.8 2.2E-07 4.8E-12 84.4 15.4 131 308-476 290-428 (454)
326 KOG0782 Predicted diacylglycer 98.8 9.1E-09 2E-13 99.8 6.8 119 17-143 870-988 (1004)
327 KOG0783 Uncharacterized conser 98.8 4.9E-09 1.1E-13 106.0 4.4 84 77-164 44-128 (1267)
328 PF13173 AAA_14: AAA domain 98.8 5.2E-08 1.1E-12 80.8 9.4 120 244-384 3-126 (128)
329 KOG0506 Glutaminase (contains 98.8 8.4E-09 1.8E-13 98.2 5.0 91 48-146 506-597 (622)
330 PRK07952 DNA replication prote 98.7 9.6E-08 2.1E-12 87.6 11.3 100 244-353 100-204 (244)
331 KOG0818 GTPase-activating prot 98.7 4.1E-08 8.9E-13 94.0 8.1 109 80-193 122-237 (669)
332 PF01637 Arch_ATPase: Archaeal 98.7 8.7E-07 1.9E-11 81.7 16.8 163 242-423 19-224 (234)
333 KOG0705 GTPase-activating prot 98.7 2.6E-08 5.5E-13 97.1 6.5 94 51-148 627-720 (749)
334 PRK12377 putative replication 98.7 1.1E-07 2.3E-12 87.6 10.3 73 243-319 101-176 (248)
335 PRK08181 transposase; Validate 98.7 8.5E-08 1.8E-12 89.3 9.6 74 243-320 106-181 (269)
336 PRK05917 DNA polymerase III su 98.7 1.3E-07 2.8E-12 88.3 10.6 119 242-381 18-155 (290)
337 KOG0522 Ankyrin repeat protein 98.7 2.7E-08 5.9E-13 96.4 5.4 86 16-106 23-109 (560)
338 KOG0506 Glutaminase (contains 98.7 4E-08 8.7E-13 93.6 6.3 95 82-181 503-598 (622)
339 KOG0818 GTPase-activating prot 98.6 1E-07 2.2E-12 91.3 8.7 86 51-144 136-222 (669)
340 PF13606 Ank_3: Ankyrin repeat 98.6 3.2E-08 7E-13 58.7 3.4 29 47-79 1-29 (30)
341 KOG1051 Chaperone HSP104 and r 98.6 3.4E-07 7.4E-12 96.7 12.9 145 244-392 209-362 (898)
342 PF05729 NACHT: NACHT domain 98.6 7.5E-07 1.6E-11 77.4 13.1 146 245-395 2-165 (166)
343 PRK06835 DNA replication prote 98.6 4E-07 8.6E-12 87.5 12.3 73 244-320 184-260 (329)
344 PF00023 Ank: Ankyrin repeat H 98.6 6.8E-08 1.5E-12 59.0 3.8 33 47-83 1-33 (33)
345 PRK06526 transposase; Provisio 98.6 1.2E-07 2.5E-12 87.9 7.2 75 242-320 97-173 (254)
346 COG4650 RtcR Sigma54-dependent 98.5 1.1E-07 2.4E-12 86.2 5.8 93 242-346 207-311 (531)
347 PF13401 AAA_22: AAA domain; P 98.5 1.9E-07 4.1E-12 77.8 6.6 102 243-354 4-125 (131)
348 KOG0522 Ankyrin repeat protein 98.5 1.7E-07 3.6E-12 91.1 6.7 88 50-143 22-109 (560)
349 KOG0782 Predicted diacylglycer 98.5 1.5E-07 3.2E-12 91.6 6.2 100 74-178 888-989 (1004)
350 PRK14700 recombination factor 98.5 4.6E-07 1E-11 83.8 7.7 115 338-477 1-115 (300)
351 PRK05818 DNA polymerase III su 98.5 1.1E-06 2.3E-11 80.3 9.9 118 241-380 5-147 (261)
352 PRK06921 hypothetical protein; 98.5 6.3E-07 1.4E-11 83.9 8.6 71 242-317 116-188 (266)
353 PRK07276 DNA polymerase III su 98.5 8.8E-07 1.9E-11 83.1 9.5 128 242-390 23-172 (290)
354 PF03215 Rad17: Rad17 cell cyc 98.5 7.3E-06 1.6E-10 83.4 16.8 55 204-269 17-71 (519)
355 PRK09183 transposase/IS protei 98.4 7.9E-07 1.7E-11 83.0 8.9 75 242-320 101-178 (259)
356 PF06309 Torsin: Torsin; Inte 98.4 2.2E-06 4.8E-11 68.9 9.7 69 197-274 15-84 (127)
357 KOG0705 GTPase-activating prot 98.4 6.8E-07 1.5E-11 87.4 7.8 93 16-112 627-721 (749)
358 PRK08939 primosomal protein Dn 98.4 1.2E-06 2.7E-11 83.4 9.2 103 242-353 155-260 (306)
359 KOG0481 DNA replication licens 98.4 1.6E-06 3.5E-11 84.3 9.4 57 207-267 332-388 (729)
360 KOG3609 Receptor-activated Ca2 98.4 7.5E-07 1.6E-11 91.6 7.6 124 11-150 23-159 (822)
361 PF01695 IstB_IS21: IstB-like 98.4 6.1E-07 1.3E-11 78.7 6.0 73 242-318 46-120 (178)
362 KOG0482 DNA replication licens 98.3 1.7E-06 3.7E-11 84.1 8.8 257 200-478 335-639 (721)
363 COG1484 DnaC DNA replication p 98.3 3.7E-06 8E-11 78.1 10.7 75 242-320 104-181 (254)
364 PRK07132 DNA polymerase III su 98.3 5.2E-06 1.1E-10 78.6 11.9 127 243-391 18-160 (299)
365 KOG0511 Ankyrin repeat protein 98.3 1.8E-06 3.9E-11 80.4 7.3 65 52-120 40-104 (516)
366 cd01120 RecA-like_NTPases RecA 98.3 2.5E-06 5.5E-11 73.8 7.8 106 246-355 2-137 (165)
367 KOG0521 Putative GTPase activa 98.3 6.9E-07 1.5E-11 94.4 4.2 88 83-175 654-741 (785)
368 KOG1970 Checkpoint RAD17-RFC c 98.3 2.4E-05 5.1E-10 77.4 14.4 173 244-447 111-319 (634)
369 KOG0520 Uncharacterized conser 98.2 8.3E-07 1.8E-11 93.2 4.5 122 48-178 574-702 (975)
370 PRK15455 PrkA family serine pr 98.2 1.9E-05 4.2E-10 79.6 13.4 57 203-269 73-129 (644)
371 KOG0477 DNA replication licens 98.2 1.8E-05 3.8E-10 79.1 12.8 104 207-320 450-560 (854)
372 PF12775 AAA_7: P-loop contain 98.2 3.7E-06 8E-11 78.9 7.6 138 242-396 32-196 (272)
373 KOG0521 Putative GTPase activa 98.2 1E-06 2.2E-11 93.2 3.9 86 48-141 656-741 (785)
374 KOG2384 Major histocompatibili 98.2 1.9E-06 4.2E-11 72.8 4.8 68 76-147 3-71 (223)
375 KOG0511 Ankyrin repeat protein 98.2 2.4E-06 5.1E-11 79.6 5.8 85 86-178 37-121 (516)
376 PRK00771 signal recognition pa 98.2 8.2E-05 1.8E-09 74.2 17.1 219 241-481 93-336 (437)
377 KOG1968 Replication factor C, 98.2 6.5E-06 1.4E-10 87.9 9.7 184 206-423 320-521 (871)
378 COG1618 Predicted nucleotide k 98.2 2E-05 4.3E-10 65.6 10.2 33 242-274 4-36 (179)
379 KOG2228 Origin recognition com 98.2 0.00016 3.5E-09 67.5 17.0 161 208-394 26-220 (408)
380 KOG0520 Uncharacterized conser 98.2 3.1E-06 6.6E-11 89.1 6.4 128 8-144 569-702 (975)
381 PHA00729 NTP-binding motif con 98.1 1.6E-05 3.4E-10 71.4 8.0 25 244-268 18-42 (226)
382 KOG2384 Major histocompatibili 98.0 2.4E-05 5.1E-10 66.4 7.9 74 38-116 3-77 (223)
383 PF00910 RNA_helicase: RNA hel 98.0 1.8E-05 3.9E-10 63.2 6.9 80 246-346 1-82 (107)
384 PF03969 AFG1_ATPase: AFG1-lik 98.0 1.8E-05 3.9E-10 77.1 8.1 109 240-358 59-171 (362)
385 PF13604 AAA_30: AAA domain; P 98.0 2.1E-05 4.5E-10 70.3 7.8 99 244-357 19-133 (196)
386 PF07693 KAP_NTPase: KAP famil 98.0 0.00029 6.2E-09 68.6 16.0 84 307-397 173-267 (325)
387 COG3267 ExeA Type II secretory 97.9 0.00022 4.7E-09 64.3 13.0 179 243-448 51-253 (269)
388 PRK08118 topology modulation p 97.9 0.0001 2.2E-09 64.0 10.1 102 244-396 2-104 (167)
389 cd01124 KaiC KaiC is a circadi 97.9 5.2E-05 1.1E-09 67.3 7.9 24 246-269 2-25 (187)
390 PRK10867 signal recognition pa 97.9 0.00093 2E-08 66.6 17.3 219 241-481 98-344 (433)
391 PRK07261 topology modulation p 97.8 0.00012 2.6E-09 63.8 9.6 102 245-395 2-103 (171)
392 PF12774 AAA_6: Hydrolytic ATP 97.8 5.4E-05 1.2E-09 69.0 7.6 65 243-320 32-98 (231)
393 PF00931 NB-ARC: NB-ARC domain 97.8 0.00016 3.5E-09 68.9 11.2 134 242-396 18-173 (287)
394 KOG3609 Receptor-activated Ca2 97.8 1.9E-05 4.1E-10 81.6 4.9 123 48-182 25-157 (822)
395 TIGR01425 SRP54_euk signal rec 97.8 0.0015 3.3E-08 64.7 18.0 31 241-271 98-128 (429)
396 PF14516 AAA_35: AAA-like doma 97.8 0.0015 3.2E-08 63.5 17.9 139 242-392 30-213 (331)
397 PF12780 AAA_8: P-loop contain 97.8 0.00052 1.1E-08 64.1 13.6 166 207-396 9-213 (268)
398 PHA02774 E1; Provisional 97.8 0.00033 7.1E-09 71.0 12.7 25 244-268 435-459 (613)
399 PRK13695 putative NTPase; Prov 97.8 0.00028 6E-09 61.9 11.0 25 245-269 2-26 (174)
400 PF03266 NTPase_1: NTPase; In 97.8 0.00011 2.3E-09 63.7 8.1 26 245-270 1-26 (168)
401 COG0563 Adk Adenylate kinase a 97.8 9.5E-05 2.1E-09 64.6 7.8 33 245-286 2-34 (178)
402 PHA02624 large T antigen; Prov 97.8 0.0003 6.5E-09 71.5 12.1 113 244-379 432-561 (647)
403 PF01745 IPT: Isopentenyl tran 97.8 0.0002 4.3E-09 62.9 9.4 156 246-423 4-160 (233)
404 cd03283 ABC_MutS-like MutS-lik 97.7 0.00026 5.7E-09 63.3 10.4 118 244-367 26-160 (199)
405 KOG0479 DNA replication licens 97.7 0.00067 1.5E-08 67.7 13.8 249 199-477 293-642 (818)
406 PRK10536 hypothetical protein; 97.7 0.00022 4.7E-09 65.3 9.8 24 244-267 75-98 (262)
407 TIGR01618 phage_P_loop phage n 97.7 7E-05 1.5E-09 67.5 6.4 24 242-265 11-34 (220)
408 COG1067 LonB Predicted ATP-dep 97.7 0.00016 3.5E-09 75.1 9.9 155 299-479 218-401 (647)
409 PRK04296 thymidine kinase; Pro 97.7 0.00018 4E-09 63.9 9.1 26 245-270 4-29 (190)
410 PRK12723 flagellar biosynthesi 97.7 0.0035 7.6E-08 61.7 18.0 79 242-320 173-268 (388)
411 KOG2543 Origin recognition com 97.7 0.002 4.4E-08 61.4 15.4 187 242-459 29-245 (438)
412 PRK14722 flhF flagellar biosyn 97.7 0.00084 1.8E-08 65.5 13.4 27 242-268 136-162 (374)
413 PLN03210 Resistant to P. syrin 97.7 0.00043 9.2E-09 78.7 13.0 52 204-269 182-233 (1153)
414 TIGR02688 conserved hypothetic 97.6 0.00016 3.4E-09 70.7 7.5 82 242-344 208-291 (449)
415 PF02562 PhoH: PhoH-like prote 97.6 0.0003 6.6E-09 62.5 8.6 27 244-270 20-46 (205)
416 PF13207 AAA_17: AAA domain; P 97.6 4.3E-05 9.3E-10 62.5 2.9 24 246-269 2-25 (121)
417 TIGR02237 recomb_radB DNA repa 97.6 0.00035 7.6E-09 63.2 9.0 108 242-353 11-148 (209)
418 PRK06217 hypothetical protein; 97.6 0.00023 4.9E-09 63.0 7.5 25 245-269 3-27 (183)
419 TIGR00959 ffh signal recogniti 97.6 0.0033 7.1E-08 62.8 16.0 217 242-481 98-343 (428)
420 PRK06581 DNA polymerase III su 97.5 0.0013 2.8E-08 59.2 11.7 134 244-397 16-165 (263)
421 PRK14532 adenylate kinase; Pro 97.5 0.00019 4.2E-09 63.8 6.3 37 245-290 2-38 (188)
422 PTZ00088 adenylate kinase 1; P 97.5 0.00042 9.2E-09 63.2 8.5 28 242-269 5-32 (229)
423 PF08298 AAA_PrkA: PrkA AAA do 97.5 0.0014 3E-08 62.6 11.8 52 207-268 62-113 (358)
424 cd00046 DEXDc DEAD-like helica 97.5 0.00042 9.1E-09 57.7 7.8 25 245-269 2-26 (144)
425 PF05707 Zot: Zonular occluden 97.5 0.00027 5.8E-09 63.0 6.8 19 306-324 79-97 (193)
426 PRK09376 rho transcription ter 97.5 0.00017 3.8E-09 69.7 5.6 30 240-269 166-195 (416)
427 cd01121 Sms Sms (bacterial rad 97.5 0.00071 1.5E-08 66.4 10.0 107 242-352 81-207 (372)
428 COG3854 SpoIIIAA ncharacterize 97.4 0.00065 1.4E-08 60.1 8.3 112 242-368 136-265 (308)
429 PLN02200 adenylate kinase fami 97.4 0.00038 8.1E-09 64.0 7.3 41 240-289 40-80 (234)
430 PRK00131 aroK shikimate kinase 97.4 0.00011 2.5E-09 64.3 3.5 28 242-269 3-30 (175)
431 PRK06547 hypothetical protein; 97.4 0.00039 8.5E-09 60.5 6.6 29 241-269 13-41 (172)
432 cd00544 CobU Adenosylcobinamid 97.4 0.00065 1.4E-08 58.9 7.9 99 246-351 2-122 (169)
433 PRK11823 DNA repair protein Ra 97.4 0.0008 1.7E-08 68.0 9.7 107 242-352 79-205 (446)
434 PRK05800 cobU adenosylcobinami 97.4 0.00036 7.8E-09 60.6 6.3 94 245-345 3-116 (170)
435 PF09848 DUF2075: Uncharacteri 97.4 0.00066 1.4E-08 66.7 8.8 23 245-267 3-25 (352)
436 PLN02674 adenylate kinase 97.4 0.00025 5.4E-09 65.0 5.4 39 242-289 30-68 (244)
437 cd03282 ABC_MSH4_euk MutS4 hom 97.4 0.0018 3.9E-08 58.1 10.6 112 244-362 30-158 (204)
438 cd03243 ABC_MutS_homologs The 97.3 0.0027 5.8E-08 57.1 11.5 112 243-360 29-156 (202)
439 cd01128 rho_factor Transcripti 97.3 0.00022 4.8E-09 65.9 4.5 30 240-269 13-42 (249)
440 cd03281 ABC_MSH5_euk MutS5 hom 97.3 0.0025 5.5E-08 57.7 11.1 23 244-266 30-52 (213)
441 cd01131 PilT Pilus retraction 97.3 0.0011 2.5E-08 59.3 8.7 25 245-269 3-27 (198)
442 TIGR01448 recD_rel helicase, p 97.3 0.00098 2.1E-08 71.4 9.2 88 244-344 339-443 (720)
443 PF00448 SRP54: SRP54-type pro 97.3 0.0021 4.4E-08 57.3 9.7 104 243-354 1-125 (196)
444 PRK00625 shikimate kinase; Pro 97.3 0.00021 4.5E-09 62.3 3.2 25 245-269 2-26 (173)
445 PRK13808 adenylate kinase; Pro 97.3 0.00089 1.9E-08 64.1 7.6 25 245-269 2-26 (333)
446 PRK03839 putative kinase; Prov 97.3 0.0002 4.3E-09 63.2 3.1 25 245-269 2-26 (180)
447 COG5271 MDN1 AAA ATPase contai 97.2 0.002 4.3E-08 71.6 10.7 131 242-393 1542-1703(4600)
448 PRK08533 flagellar accessory p 97.2 0.0025 5.4E-08 58.5 10.1 26 242-267 23-48 (230)
449 PLN02459 probable adenylate ki 97.2 0.0011 2.4E-08 61.1 7.7 38 242-288 28-65 (261)
450 PRK14737 gmk guanylate kinase; 97.2 0.0014 3E-08 58.0 8.0 26 242-267 3-28 (186)
451 PRK06762 hypothetical protein; 97.2 0.00048 1.1E-08 59.8 5.1 24 244-267 3-26 (166)
452 PRK05973 replicative DNA helic 97.2 0.006 1.3E-07 55.7 12.2 106 241-353 62-191 (237)
453 PLN02840 tRNA dimethylallyltra 97.2 0.002 4.4E-08 63.5 9.7 105 243-360 21-126 (421)
454 PF13245 AAA_19: Part of AAA d 97.2 0.00081 1.8E-08 49.7 5.3 25 244-268 11-36 (76)
455 PRK13947 shikimate kinase; Pro 97.2 0.00027 5.8E-09 61.8 3.2 25 245-269 3-27 (171)
456 COG1373 Predicted ATPase (AAA+ 97.2 0.0019 4E-08 64.3 9.5 119 245-387 39-161 (398)
457 PRK14974 cell division protein 97.2 0.0061 1.3E-07 58.9 12.6 30 242-271 139-168 (336)
458 KOG3347 Predicted nucleotide k 97.2 0.00027 5.8E-09 58.0 2.7 28 242-269 6-33 (176)
459 PRK11889 flhF flagellar biosyn 97.2 0.025 5.5E-07 55.2 16.4 76 242-319 240-333 (436)
460 PRK14529 adenylate kinase; Pro 97.2 0.0013 2.8E-08 59.6 7.3 25 245-269 2-26 (223)
461 COG1485 Predicted ATPase [Gene 97.2 0.00053 1.1E-08 64.8 4.9 107 240-356 62-172 (367)
462 TIGR00150 HI0065_YjeE ATPase, 97.2 0.00048 1E-08 56.7 4.1 30 242-271 21-50 (133)
463 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00032 6.8E-09 62.1 3.2 35 246-289 2-36 (183)
464 PRK06067 flagellar accessory p 97.1 0.003 6.5E-08 58.3 9.8 27 241-267 23-49 (234)
465 PRK13764 ATPase; Provisional 97.1 0.0036 7.8E-08 64.8 11.1 76 242-317 256-335 (602)
466 PF13671 AAA_33: AAA domain; P 97.1 0.00027 5.8E-09 59.7 2.5 23 246-268 2-24 (143)
467 TIGR02012 tigrfam_recA protein 97.1 0.0032 6.9E-08 60.2 9.9 107 242-352 54-189 (321)
468 cd00464 SK Shikimate kinase (S 97.1 0.00036 7.8E-09 59.7 3.3 25 245-269 1-25 (154)
469 PRK00279 adk adenylate kinase; 97.1 0.00097 2.1E-08 60.6 6.2 25 245-269 2-26 (215)
470 COG1102 Cmk Cytidylate kinase 97.1 0.00034 7.4E-09 58.4 2.8 24 246-269 3-26 (179)
471 smart00534 MUTSac ATPase domai 97.1 0.0059 1.3E-07 54.0 11.0 110 246-361 2-128 (185)
472 PRK13948 shikimate kinase; Pro 97.1 0.00049 1.1E-08 60.4 3.9 43 242-293 9-51 (182)
473 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.0039 8.4E-08 56.0 9.8 21 245-265 30-50 (200)
474 PRK08233 hypothetical protein; 97.1 0.0018 3.9E-08 57.0 7.6 25 244-268 4-28 (182)
475 cd02019 NK Nucleoside/nucleoti 97.1 0.0005 1.1E-08 49.9 3.2 22 246-267 2-23 (69)
476 cd01130 VirB11-like_ATPase Typ 97.1 0.0021 4.5E-08 57.0 7.9 27 242-268 24-50 (186)
477 PF06745 KaiC: KaiC; InterPro 97.1 0.0039 8.6E-08 57.1 10.0 105 241-352 17-158 (226)
478 TIGR02858 spore_III_AA stage I 97.1 0.0046 1E-07 57.9 10.3 25 244-268 112-136 (270)
479 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0098 2.1E-07 52.0 11.7 26 242-267 24-49 (177)
480 cd01129 PulE-GspE PulE/GspE Th 97.1 0.0088 1.9E-07 56.0 12.1 97 243-357 80-186 (264)
481 COG1126 GlnQ ABC-type polar am 97.1 0.0072 1.6E-07 53.4 10.5 27 239-265 24-50 (240)
482 PF13238 AAA_18: AAA domain; P 97.0 0.00048 1E-08 56.8 3.2 22 246-267 1-22 (129)
483 TIGR00767 rho transcription te 97.0 0.00086 1.9E-08 65.4 5.3 31 239-269 164-194 (415)
484 PRK13949 shikimate kinase; Pro 97.0 0.00039 8.4E-09 60.5 2.7 25 245-269 3-27 (169)
485 PF13191 AAA_16: AAA ATPase do 97.0 0.00066 1.4E-08 59.9 4.1 50 208-270 2-51 (185)
486 TIGR02768 TraA_Ti Ti-type conj 97.0 0.0022 4.7E-08 69.1 8.6 73 244-320 369-453 (744)
487 TIGR01351 adk adenylate kinase 97.0 0.0014 3E-08 59.4 6.2 24 246-269 2-25 (210)
488 smart00072 GuKc Guanylate kina 97.0 0.011 2.5E-07 52.1 11.9 24 244-267 3-26 (184)
489 COG5271 MDN1 AAA ATPase contai 97.0 0.0054 1.2E-07 68.4 11.2 130 242-392 887-1046(4600)
490 COG0703 AroK Shikimate kinase 97.0 0.00044 9.5E-09 59.2 2.5 26 244-269 3-28 (172)
491 cd00227 CPT Chloramphenicol (C 97.0 0.00046 1E-08 60.5 2.8 26 244-269 3-28 (175)
492 PRK13889 conjugal transfer rel 97.0 0.0052 1.1E-07 67.4 11.2 84 245-343 364-459 (988)
493 cd03227 ABC_Class2 ABC-type Cl 97.0 0.014 3.1E-07 50.3 12.0 27 243-269 21-47 (162)
494 smart00248 ANK ankyrin repeats 97.0 0.0012 2.6E-08 37.8 3.8 22 48-69 2-23 (30)
495 TIGR00174 miaA tRNA isopenteny 97.0 0.0038 8.2E-08 58.8 8.7 102 246-360 2-104 (287)
496 TIGR03574 selen_PSTK L-seryl-t 97.0 0.0016 3.4E-08 60.7 6.2 25 246-270 2-26 (249)
497 cd03287 ABC_MSH3_euk MutS3 hom 97.0 0.011 2.4E-07 53.7 11.4 113 242-360 30-159 (222)
498 cd02022 DPCK Dephospho-coenzym 97.0 0.004 8.7E-08 54.8 8.4 20 246-265 2-21 (179)
499 PF01443 Viral_helicase1: Vira 97.0 0.002 4.3E-08 59.4 6.8 22 246-267 1-22 (234)
500 PRK14531 adenylate kinase; Pro 96.9 0.00064 1.4E-08 60.1 3.3 26 244-269 3-28 (183)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-42 Score=315.04 Aligned_cols=236 Identities=22% Similarity=0.323 Sum_probs=207.1
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...+++++|++.+++.|++. +..|..+++++..++..+|++||||||||||||++|||+|+.... .|+.+
T Consensus 147 dvtY~dIGGL~~Qi~EirE~---VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-------tFIrv 216 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIREV---VELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA-------TFIRV 216 (406)
T ss_pred CCChhhccCHHHHHHHHHHH---hcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-------eEEEe
Confidence 46788999999999888876 888999999999999999999999999999999999999998876 99999
Q ss_pred ecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCCh---hHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKD---YGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~---~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
.+|+++.+|+|++.+.++++|+.|+ +|||||||||++..+|.++++. ..++.+-+||.+||+ +++-||+|
T Consensus 217 vgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~A 296 (406)
T COG1222 217 VGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMA 296 (406)
T ss_pred ccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEe
Confidence 9999999999999999999999885 4999999999999998755433 445667777777886 78999999
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+.-.+. ||||+| |||+.|+||.||.+.|.+||+.|.+++ .+..+++.+.|+.++.
T Consensus 297 TNR~D~L-----DPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM---------~l~~dvd~e~la~~~~-------- 354 (406)
T COG1222 297 TNRPDIL-----DPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM---------NLADDVDLELLARLTE-------- 354 (406)
T ss_pred cCCcccc-----ChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc---------cCccCcCHHHHHHhcC--------
Confidence 7766554 999988 999999999999999999999999876 4678899998888887
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
..+|+++++++.+|-..+. ++....+|++||.+|..++..
T Consensus 355 -g~sGAdlkaictEAGm~Ai---------R~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 355 -GFSGADLKAICTEAGMFAI---------RERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred -CCchHHHHHHHHHHhHHHH---------HhccCeecHHHHHHHHHHHHh
Confidence 4568999999999988762 345578999999999999865
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-39 Score=319.22 Aligned_cols=241 Identities=22% Similarity=0.262 Sum_probs=214.3
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeE
Q 011578 200 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 279 (482)
Q Consensus 200 ~~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 279 (482)
.....|++|+|++++|+.+.+. +.++..+++.+..++..+|++||||||||||||++||++|++... +|+
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~---V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~-------nFl 497 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQA---VEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM-------NFL 497 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHH---HhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC-------Cee
Confidence 3446799999999999999987 778889999999999999999999999999999999999999988 999
Q ss_pred EeecccccccccccchhhHHHHHHhcCC---cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 280 EVQRTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 280 ~~~~~~~~~~~~g~~~~~~~~~~~~a~~---~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
.+.+.++.++|+|++++.++++|++|+. +||||||||++..+|+++++....+++++||++||+ +.|+||+||
T Consensus 498 svkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAAT 577 (693)
T KOG0730|consen 498 SVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAAT 577 (693)
T ss_pred eccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEecc
Confidence 9999999999999999999999998754 999999999999999877778899999999999997 578899987
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+..... ||++.| |||+.|++|.||.+.|.+||+.++++++ +.++++.+.|++.+++++
T Consensus 578 NRpd~I-----D~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp---------~~~~vdl~~La~~T~g~S------ 637 (693)
T KOG0730|consen 578 NRPDMI-----DPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP---------FSEDVDLEELAQATEGYS------ 637 (693)
T ss_pred CChhhc-----CHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC---------CCccccHHHHHHHhccCC------
Confidence 665554 899988 9999999999999999999999999774 567788888888888655
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHhc
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
|++|.+++++|...+..+.. +...|+.+||++|++.++|.
T Consensus 638 ---GAel~~lCq~A~~~a~~e~i-------~a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 638 ---GAEIVAVCQEAALLALRESI-------EATEITWQHFEEALKAVRPS 677 (693)
T ss_pred ---hHHHHHHHHHHHHHHHHHhc-------ccccccHHHHHHHHHhhccc
Confidence 89999999999988755432 25689999999999998874
No 3
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-38 Score=288.86 Aligned_cols=246 Identities=22% Similarity=0.267 Sum_probs=210.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
-.|++|.|++++|+.|++. +..|...++++..+. .+.++||++||||||||+|||++|.+++. .||.++
T Consensus 209 ikW~DIagl~~AK~lL~EA---VvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~t-------TFFNVS 277 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEA---VVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGT-------TFFNVS 277 (491)
T ss_pred cChHhhcchHHHHHHHHHH---HhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcC-------eEEEec
Confidence 5799999999999999986 677777777776654 48899999999999999999999999986 999999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC-CChhHHHHHHHHHhhhcC-------CcEEEEEe
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD-DKDYGIEALEEIMSVMDG-------GKVVVIFA 351 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~-~~~~~~~~~~~ll~~l~~-------~~~~vi~~ 351 (482)
.+.+.++|-|++++.++=+|+.|+ +++|||||||+|..+|++. +|+..+++-++||.+||+ .++|+|+|
T Consensus 278 sstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLA 357 (491)
T KOG0738|consen 278 SSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLA 357 (491)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEe
Confidence 999999999999999999999885 4999999999999998855 588899999999999997 36788888
Q ss_pred cCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 352 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
.|+-+++ .|.+|++||..+|.+|.|+.++|..+++..|... ...+.+..+.|++.+++|+
T Consensus 358 ATN~PWd----iDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~---------~~~~~~~~~~lae~~eGyS------- 417 (491)
T KOG0738|consen 358 ATNFPWD----IDEALRRRLEKRIYIPLPDAEARSALIKILLRSV---------ELDDPVNLEDLAERSEGYS------- 417 (491)
T ss_pred ccCCCcc----hHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccc---------cCCCCccHHHHHHHhcCCC-------
Confidence 8877775 4899999999999999999999999999999865 4567888888888888665
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCCC-------CChhh-hhcccHHHHHHHHHHHHhcC
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFDC-------LDTDE-LRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~~-------~~~~~-~~~i~~~d~~~al~~~~~~~ 481 (482)
|.+|.+++..|......|..... ...++ -.+++.+||++|+++++|++
T Consensus 418 --GaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSv 473 (491)
T KOG0738|consen 418 --GADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSV 473 (491)
T ss_pred --hHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCC
Confidence 78889999999888877643211 11222 24799999999999999985
No 4
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-38 Score=302.31 Aligned_cols=251 Identities=22% Similarity=0.303 Sum_probs=212.2
Q ss_pred HHHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEE
Q 011578 201 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (482)
Q Consensus 201 ~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 280 (482)
....|++|+++++++.++... +.+|.++++.+..++...|.++|||||||||||.+|||+|++.+. +|+.
T Consensus 506 PdVtW~dIGaL~~vR~eL~~a---I~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~-------NFis 575 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMA---ILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGA-------NFIS 575 (802)
T ss_pred CCCChhhcccHHHHHHHHHHH---HhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccC-------ceEe
Confidence 346799999999999999976 778889999999999999999999999999999999999999988 9999
Q ss_pred eecccccccccccchhhHHHHHHhcCC---cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecC
Q 011578 281 VQRTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGY 353 (482)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~~---~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~ 353 (482)
+.+.+|..+|||+++..++++|..|+. |||||||+|.|.++|+.+..+.+.+++|+||+.||+ ..|+||+||+
T Consensus 576 VKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATN 655 (802)
T KOG0733|consen 576 VKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATN 655 (802)
T ss_pred ecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecC
Confidence 999999999999999999999998864 999999999999999988888999999999999997 4588888877
Q ss_pred chhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 354 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
..++. ||+++| |||..++++.|+.+||..||+...+.. +-.+..+++.+.|+....-. .
T Consensus 656 RPDiI-----DpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~-------k~pl~~dVdl~eia~~~~c~-------g 716 (802)
T KOG0733|consen 656 RPDII-----DPAILRPGRLDKLLYVGLPNAEERVAILKTITKNT-------KPPLSSDVDLDEIARNTKCE-------G 716 (802)
T ss_pred CCccc-----chhhcCCCccCceeeecCCCHHHHHHHHHHHhccC-------CCCCCcccCHHHHhhccccc-------C
Confidence 66664 899988 999999999999999999999998863 23677888988888877611 3
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCCC-CChh------hhhcccHHHHHHHHHHHHhc
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFDC-LDTD------ELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~~-~~~~------~~~~i~~~d~~~al~~~~~~ 480 (482)
+.|++|-.+|.+|...+..+...+. ...+ ....+|..||.+|+++++|.
T Consensus 717 ftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 717 FTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred CchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence 4477777888877766654432211 0111 12357899999999999985
No 5
>CHL00181 cbbX CbbX; Provisional
Probab=100.00 E-value=9.5e-35 Score=273.24 Aligned_cols=264 Identities=37% Similarity=0.603 Sum_probs=218.6
Q ss_pred hhHHHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC
Q 011578 196 AKMDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP 274 (482)
Q Consensus 196 ~~~~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~ 274 (482)
..++.+...++ +++|++.+|++|+++...+.++..+...+.... .++.+++|+||||||||++|+++|+.+...+...
T Consensus 12 ~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~-~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~ 90 (287)
T CHL00181 12 TQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSS-NPGLHMSFTGSPGTGKTTVALKMADILYKLGYIK 90 (287)
T ss_pred cCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 45566777776 799999999999999888888877777776542 3566799999999999999999999998888888
Q ss_pred CCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEec
Q 011578 275 TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG 352 (482)
Q Consensus 275 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~ 352 (482)
.++++.++.+++.+.|+|+++.+++++|+++.++||||||+|.+.+++. +++++.++++.|++.|+. +.++||+++
T Consensus 91 ~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~~~~~~vI~ag 168 (287)
T CHL00181 91 KGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQRDDLVVIFAG 168 (287)
T ss_pred CCceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 8899999999999999999998899999999999999999999976432 345678899999999976 568999999
Q ss_pred CchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhH-hhccc
Q 011578 353 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE-KQRRE 431 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~ 431 (482)
+++.++.++..+|+|++||+..|.|++|+.+++.+|++.++++.. +.+ +++++..+....... ....+
T Consensus 169 ~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~-------~~l----~~~~~~~L~~~i~~~~~~~~~ 237 (287)
T CHL00181 169 YKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQ-------YQL----TPEAEKALLDYIKKRMEQPLF 237 (287)
T ss_pred CcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhc-------CCC----ChhHHHHHHHHHHHhCCCCCC
Confidence 998888888889999999999999999999999999999998753 233 344444444432211 12347
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCC---CCChhhhhcccHHHHHHH
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFD---CLDTDELRTITLEDLEAG 473 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~---~~~~~~~~~i~~~d~~~a 473 (482)
+|+|.++++++++...++.|+... ..+.+++..|+.+|+.+.
T Consensus 238 GNaR~vrn~ve~~~~~~~~r~~~~~~~~~~~~~l~~~~~~d~~~~ 282 (287)
T CHL00181 238 ANARSVRNALDRARMRQANRIFESGGRVLTKADLVTIEAEDILKS 282 (287)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhCCCHHHHhHH
Confidence 999999999999999999999653 455788999999999753
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-36 Score=289.99 Aligned_cols=217 Identities=20% Similarity=0.265 Sum_probs=191.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|.+++|.+....++.+.+..+ .+++.+..++..+|.++||+||||||||+||++||++++. ||+.++
T Consensus 187 v~f~diGG~d~~~~el~~li~~i----~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v-------Pf~~is 255 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIHI----KHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV-------PFLSIS 255 (802)
T ss_pred cchhhccChHHHHHHHHHHHHHh----cCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC-------ceEeec
Confidence 37899999999999999876554 5556666677789999999999999999999999999988 999999
Q ss_pred cccccccccccchhhHHHHHHhcCC---cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--------CcEEEEEe
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--------GKVVVIFA 351 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~---~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--------~~~~vi~~ 351 (482)
+.++++.+.|+++++++++|++|.. ||+||||||.+.++|...+.+..++++.+|++.||+ ..|+||+|
T Consensus 256 ApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgA 335 (802)
T KOG0733|consen 256 APEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGA 335 (802)
T ss_pred chhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEec
Confidence 9999999999999999999999864 999999999999999988889999999999999986 34788888
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+..+.. +|+|+| |||..|.+..|+..+|.+||+.+++. +++...++...|++++.++.
T Consensus 336 TnRPDsl-----DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~---------lrl~g~~d~~qlA~lTPGfV----- 396 (802)
T KOG0733|consen 336 TNRPDSL-----DPALRRAGRFDREICLGVPSETAREEILRIICRG---------LRLSGDFDFKQLAKLTPGFV----- 396 (802)
T ss_pred CCCCccc-----CHHHhccccccceeeecCCchHHHHHHHHHHHhh---------CCCCCCcCHHHHHhcCCCcc-----
Confidence 7655443 899988 99999999999999999999999874 46778899999999998765
Q ss_pred cccCcchhHHHHHHHHHHhhhhhc
Q 011578 430 REMNGGLVDPMLVNARENLDLRLS 453 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~ 453 (482)
|++|.+++.+|..-+.+|+.
T Consensus 397 ----GADL~AL~~~Aa~vAikR~l 416 (802)
T KOG0733|consen 397 ----GADLMALCREAAFVAIKRIL 416 (802)
T ss_pred ----chhHHHHHHHHHHHHHHHHh
Confidence 77888888888888887764
No 7
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=100.00 E-value=1.4e-34 Score=272.58 Aligned_cols=264 Identities=36% Similarity=0.580 Sum_probs=221.1
Q ss_pred hhHHHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC
Q 011578 196 AKMDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP 274 (482)
Q Consensus 196 ~~~~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~ 274 (482)
..+++....++ +++|++.+|+++.++...+.++..+...+.... .+..+++|+||||||||++|+++|+.+...+...
T Consensus 11 ~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~-~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~ 89 (284)
T TIGR02880 11 SGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASA-APTLHMSFTGNPGTGKTTVALRMAQILHRLGYVR 89 (284)
T ss_pred ccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-CCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcc
Confidence 34555666666 699999999999999988888888887777643 3556899999999999999999999999888888
Q ss_pred CCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEec
Q 011578 275 TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG 352 (482)
Q Consensus 275 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~ 352 (482)
.++|+.++++++.+.|+|+++.+++++|+++.++||||||++.+.+.++ +.+...++++.|++.|+. +.++||+++
T Consensus 90 ~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~~~~~~vI~a~ 167 (284)
T TIGR02880 90 KGHLVSVTRDDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQRDDLVVILAG 167 (284)
T ss_pred cceEEEecHHHHhHhhcccchHHHHHHHHHccCcEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 8899999999999999999999999999999999999999999975432 345667888999999986 578999999
Q ss_pred CchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhh-Hhhccc
Q 011578 353 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT-EKQRRE 431 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~ 431 (482)
+++.++.+...+|+|.+||+..|+||+|+.+++..|++.++++.. ..++.+++..+..+... .....+
T Consensus 168 ~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~-----------~~l~~~a~~~L~~~l~~~~~~~~~ 236 (284)
T TIGR02880 168 YKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQ-----------YRFSAEAEEAFADYIALRRTQPHF 236 (284)
T ss_pred CcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhc-----------cccCHHHHHHHHHHHHHhCCCCCC
Confidence 998888888889999999999999999999999999999998753 24556667666654211 111238
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCC---CCChhhhhcccHHHHHHH
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFD---CLDTDELRTITLEDLEAG 473 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~---~~~~~~~~~i~~~d~~~a 473 (482)
||+|.++|+++++...++.|+..+ ..+.+++..|+.+|+.++
T Consensus 237 GN~R~lrn~ve~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 237 ANARSIRNAIDRARLRQANRLFCDLDRVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHhCCCHHHHhhc
Confidence 999999999999999999999753 456788999999999765
No 8
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-36 Score=248.63 Aligned_cols=171 Identities=28% Similarity=0.395 Sum_probs=157.5
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
+.+.+|.|||||||..|+.++|..||......+|..|+. ||||||+||..|+.++|+.|+.. .++++|..++.|+|
T Consensus 33 r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDda-GWtPlhia~s~g~~evVk~Ll~r---~~advna~tn~G~T 108 (226)
T KOG4412|consen 33 RDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDA-GWTPLHIAASNGNDEVVKELLNR---SGADVNATTNGGQT 108 (226)
T ss_pred cccccCCceeeeeeecCchhHHHHHHhcCCCCCCCcccc-CCchhhhhhhcCcHHHHHHHhcC---CCCCcceecCCCcc
Confidence 445589999999999999999999998778888888887 99999999999999999999995 59999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||||+..|..+++++|+++|+.++.+|+.|.||||.|+ ..|..+++++|+..|+.+|.+|+.|+|||||+-+. +
T Consensus 109 ~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAA----avGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e-~ 183 (226)
T KOG4412|consen 109 CLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAA----AVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAE-G 183 (226)
T ss_pred eehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHH----hccchhhHHHHHhcCCCCCcccccCccHHHHHHhc-c
Confidence 999999999999999999999999999999999999999 99999999999999999999999999999888554 4
Q ss_pred ChHHHHHHHhhhHHHHHHhh
Q 011578 168 SAKLRELLLWHSEEQRKRRA 187 (482)
Q Consensus 168 ~~~~~~lL~~~~~~~~~~~~ 187 (482)
+.++..+|.++|++......
T Consensus 184 ~~d~a~lLV~~gAd~~~edk 203 (226)
T KOG4412|consen 184 HPDVAVLLVRAGADTDREDK 203 (226)
T ss_pred CchHHHHHHHhccceeeccc
Confidence 78888899999988665543
No 9
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=100.00 E-value=1.1e-33 Score=264.96 Aligned_cols=253 Identities=37% Similarity=0.564 Sum_probs=212.0
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..+++++|++.+|++++++..++.....+...+.... ....+++|+||||||||++|+++|+.+...+....+.+++++
T Consensus 3 ~~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~ 81 (261)
T TIGR02881 3 RELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTS-KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVE 81 (261)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEec
Confidence 5678899999999999999988888777777777544 345789999999999999999999999877777778899999
Q ss_pred cccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchhHHHH
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~~~~~ 360 (482)
++++.++|+|+++..++++|+.+.++||||||+|.|.+. .+..+..++++.|++.|+. +.+++|+++++..+..+
T Consensus 82 ~~~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~---~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~ 158 (261)
T TIGR02881 82 RADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARG---GEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYF 158 (261)
T ss_pred HHHhhhhhccchHHHHHHHHHhccCCEEEEechhhhccC---CccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHH
Confidence 999999999999999999999999999999999999742 2345667889999999986 56788888888777777
Q ss_pred HhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhH---hhccccCcchh
Q 011578 361 IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE---KQRREMNGGLV 437 (482)
Q Consensus 361 ~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~l 437 (482)
...+|++++||+..|+||+|+.+++.+|++.++.+.. ..++++++..+....... .....+|+|.+
T Consensus 159 ~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~-----------~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~ 227 (261)
T TIGR02881 159 LSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKERE-----------YKLTEEAKWKLREHLYKVDQLSSREFSNARYV 227 (261)
T ss_pred HhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcC-----------CccCHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence 7779999999999999999999999999999987532 245667776665543322 24457999999
Q ss_pred HHHHHHHHHHhhhhhcC-CCCChhhhhcccHHHH
Q 011578 438 DPMLVNARENLDLRLSF-DCLDTDELRTITLEDL 470 (482)
Q Consensus 438 ~~~~~~a~~~~~~r~~~-~~~~~~~~~~i~~~d~ 470 (482)
+|+++.|.++++.|+.. +..+.++...|+.+||
T Consensus 228 ~n~~e~a~~~~~~r~~~~~~~~~~~~~~l~~~d~ 261 (261)
T TIGR02881 228 RNIIEKAIRRQAVRLLDKSDYSKEDLMLLKKEDL 261 (261)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHhccChhhC
Confidence 99999999999999764 5667788889999886
No 10
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-35 Score=288.89 Aligned_cols=245 Identities=22% Similarity=0.283 Sum_probs=205.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
-.|+|++|.+++|..|.+- +..|..+++++. .+..+..++|||||||||||.+|||+|-++.. .|+.+.
T Consensus 669 V~WdDVGGLeevK~eIldT---IqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVK 737 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDT---IQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVK 737 (953)
T ss_pred cchhcccCHHHHHHHHHHH---hcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeec
Confidence 5799999999999999987 667777777765 34456789999999999999999999999987 899999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCC--CCChhHHHHHHHHHhhhcC------CcEEEEEe
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKA--DDKDYGIEALEEIMSVMDG------GKVVVIFA 351 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~--~~~~~~~~~~~~ll~~l~~------~~~~vi~~ 351 (482)
+.++...|+|+++.++|++|++|+ +||||+||+|+++|+|+. +++....+++++||..||+ ..++||+|
T Consensus 738 GPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGA 817 (953)
T KOG0736|consen 738 GPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGA 817 (953)
T ss_pred CHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEec
Confidence 999999999999999999998775 599999999999999874 4566788999999999997 46899999
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCC-HHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhh
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFN-SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 428 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~-~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 428 (482)
|++.+.. ||+|++ |||.-+++++++ .+.+..+|+...++ |+++++++...+++.+.-
T Consensus 818 TNRPDLL-----DpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk---------FkLdedVdL~eiAk~cp~------ 877 (953)
T KOG0736|consen 818 TNRPDLL-----DPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK---------FKLDEDVDLVEIAKKCPP------ 877 (953)
T ss_pred CCCcccc-----ChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH---------ccCCCCcCHHHHHhhCCc------
Confidence 7766654 999988 999999997776 57778899887664 578899998888877763
Q ss_pred ccccCcchhHHHHHHHHHHhhhhhcC----CC----CChhhhhcccHHHHHHHHHHHHhc
Q 011578 429 RREMNGGLVDPMLVNARENLDLRLSF----DC----LDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 429 ~~~~~~~~l~~~~~~a~~~~~~r~~~----~~----~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
...|+++-.++..|+..+..|... +. ....+...|+++||..|+++++|.
T Consensus 878 --~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PS 935 (953)
T KOG0736|consen 878 --NMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPS 935 (953)
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCc
Confidence 356899999999999999888532 21 112335589999999999999885
No 11
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1e-34 Score=253.54 Aligned_cols=233 Identities=23% Similarity=0.306 Sum_probs=186.8
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
.-.+++++|+++.|+.-+-+.+++..|.+.. ...|.++|||||||||||++||++|++... |++.+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenPe~Fg-------~WAPknVLFyGppGTGKTm~Akalane~kv-------p~l~v 182 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENPERFG-------DWAPKNVLFYGPPGTGKTMMAKALANEAKV-------PLLLV 182 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhChHHhc-------ccCcceeEEECCCCccHHHHHHHHhcccCC-------ceEEe
Confidence 3568999999999998888878888777654 346899999999999999999999998877 99999
Q ss_pred ecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCC-ChhHHHHHHHHHhhhcC----CcEEEEEecC
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD-KDYGIEALEEIMSVMDG----GKVVVIFAGY 353 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~-~~~~~~~~~~ll~~l~~----~~~~vi~~~~ 353 (482)
.+..++++++|+....++++++.|+ +||+||||+|.++-.|...+ .....+++|+||+.||+ .-++.|++|+
T Consensus 183 kat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN 262 (368)
T COG1223 183 KATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATN 262 (368)
T ss_pred chHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecC
Confidence 9999999999999999999998764 59999999999988765333 34456889999999997 3366666655
Q ss_pred chhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccC
Q 011578 354 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 433 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (482)
+..+. ||++++||.+.|+|..|+.+||.+|++.++++.+ +..+.....+++.+.+.+
T Consensus 263 ~p~~L-----D~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P---------lpv~~~~~~~~~~t~g~S--------- 319 (368)
T COG1223 263 RPELL-----DPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP---------LPVDADLRYLAAKTKGMS--------- 319 (368)
T ss_pred Chhhc-----CHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC---------CccccCHHHHHHHhCCCC---------
Confidence 54443 9999999999999999999999999999999764 455667777887777654
Q ss_pred cchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 434 GGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
||+|+.-+-.+....+. .++...|+.+||+.|+++.++
T Consensus 320 gRdikekvlK~aLh~Ai--------~ed~e~v~~edie~al~k~r~ 357 (368)
T COG1223 320 GRDIKEKVLKTALHRAI--------AEDREKVEREDIEKALKKERK 357 (368)
T ss_pred chhHHHHHHHHHHHHHH--------HhchhhhhHHHHHHHHHhhcc
Confidence 67765543333222211 145568999999999998554
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=245.75 Aligned_cols=236 Identities=19% Similarity=0.282 Sum_probs=198.1
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
.-.+.+++|++-.|+.+++. +..|..+.++...++..+|.++|+|||||||||++|+++|+.... .|+.+
T Consensus 151 dvsy~diggld~qkqeirea---velplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a-------~firv 220 (408)
T KOG0727|consen 151 DVSYADIGGLDVQKQEIREA---VELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA-------AFIRV 220 (408)
T ss_pred CccccccccchhhHHHHHHH---HhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccch-------heeee
Confidence 45677899999999999987 777888888888999999999999999999999999999997665 89999
Q ss_pred ecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
.+++++.+|.|+....++++|+.|+ ++||||||+|.++.+|...+ +....+++-+||.+||+ ..+-||+|
T Consensus 221 vgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvima 300 (408)
T KOG0727|consen 221 VGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMA 300 (408)
T ss_pred ccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEe
Confidence 9999999999999999999998875 49999999999999886443 44566888899999987 56899999
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+..... +|+|++ |+|+.|+||.||..+++-++..+..++. +.++++.+.+...-.
T Consensus 301 tnradtl-----dpallrpgrldrkiefplpdrrqkrlvf~titskm~---------ls~~vdle~~v~rpd-------- 358 (408)
T KOG0727|consen 301 TNRADTL-----DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMN---------LSDEVDLEDLVARPD-------- 358 (408)
T ss_pred cCccccc-----CHhhcCCccccccccCCCCchhhhhhhHHhhhhccc---------CCcccCHHHHhcCcc--------
Confidence 7766654 899987 9999999999999999999999888763 556666655443333
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
...++++..++++|-..+ -++....+...||++|++...+
T Consensus 359 -kis~adi~aicqeagm~a---------vr~nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 359 -KISGADINAICQEAGMLA---------VRENRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred -ccchhhHHHHHHHHhHHH---------HHhcceeeeHHHHHHHHHhhcC
Confidence 346889999999998775 2245568999999999987653
No 13
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-33 Score=267.24 Aligned_cols=232 Identities=20% Similarity=0.289 Sum_probs=191.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|+++.|+++.|+.+.+++..++.|.+...+| ..-|++|||.||||||||+|||++|.+.+. ||+..+
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLG----GKLPKGVLLvGPPGTGKTlLARAvAGEA~V-------PFF~~s 369 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLG----GKLPKGVLLVGPPGTGKTLLARAVAGEAGV-------PFFYAS 369 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhcc----CcCCCceEEeCCCCCchhHHHHHhhcccCC-------CeEecc
Confidence 459999999999999999999998887766554 456789999999999999999999999887 999999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecCch
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE 355 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~~ 355 (482)
++++-.-|||...++++++|..|+ +|||||||+|.+..+|...+..+.+..+|+||..||+ .-++||+||+-.
T Consensus 370 GSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfp 449 (752)
T KOG0734|consen 370 GSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFP 449 (752)
T ss_pred ccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCCh
Confidence 999999999999999999999875 4999999999999998866666999999999999998 236777775433
Q ss_pred hHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccC
Q 011578 356 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 433 (482)
Q Consensus 356 ~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (482)
.. + |++|.| |||..|.+|.||...|.+||+.|+.+.. +..++|+..|++=+. +.+
T Consensus 450 e~--L---D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~---------~~~~VD~~iiARGT~---------GFs 506 (752)
T KOG0734|consen 450 EA--L---DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIP---------LDEDVDPKIIARGTP---------GFS 506 (752)
T ss_pred hh--h---hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCC---------cccCCCHhHhccCCC---------CCc
Confidence 32 2 777776 9999999999999999999999999764 556777766654444 456
Q ss_pred cchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 434 GGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
|++|.|+|.+|...++. +....+|+.|++-|-++|
T Consensus 507 GAdLaNlVNqAAlkAa~---------dga~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 507 GADLANLVNQAALKAAV---------DGAEMVTMKHLEFAKDRI 541 (752)
T ss_pred hHHHHHHHHHHHHHHHh---------cCcccccHHHHhhhhhhe
Confidence 88888888888777622 233567777777766654
No 14
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-33 Score=255.43 Aligned_cols=258 Identities=24% Similarity=0.350 Sum_probs=203.5
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCC-CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC
Q 011578 199 DELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA-RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 277 (482)
Q Consensus 199 ~~~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~ 277 (482)
......|++|.|++.+++.+++. +.+|.++++++..... .++.++||+||||||||++|+++|++.+. .
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~---VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga-------~ 154 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQEL---VILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA-------N 154 (386)
T ss_pred hhceeehhhccchHHHHHHHHHH---HhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC-------C
Confidence 34567899999999999999987 7788888888753332 47889999999999999999999999987 8
Q ss_pred eEEeecccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-----C-cEEE
Q 011578 278 VTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----G-KVVV 348 (482)
Q Consensus 278 ~~~~~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-----~-~~~v 348 (482)
|+.+..+.+.++|+|++++.++.+|..| .++||||||+|++...|++.+|+.....-++|+..+|+ + +|+|
T Consensus 155 fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlV 234 (386)
T KOG0737|consen 155 FINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLV 234 (386)
T ss_pred cceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEE
Confidence 9999999999999999999999999877 46999999999999999888899999999999999997 3 3555
Q ss_pred EEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhh
Q 011578 349 IFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 428 (482)
Q Consensus 349 i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 428 (482)
++|| +.+.+ + |.++.||++.+++++.|+.++|.+|++.+++++ ++.++++...++.++.+++++++
T Consensus 235 lgAT-NRP~D-l---DeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e---------~~e~~vD~~~iA~~t~GySGSDL 300 (386)
T KOG0737|consen 235 LGAT-NRPFD-L---DEAIIRRLPRRFHVGLPDAEQRRKILKVILKKE---------KLEDDVDLDEIAQMTEGYSGSDL 300 (386)
T ss_pred EeCC-CCCcc-H---HHHHHHhCcceeeeCCCchhhHHHHHHHHhccc---------ccCcccCHHHHHHhcCCCcHHHH
Confidence 5553 33332 2 888999999999999999999999999999876 46689999999999999886666
Q ss_pred ccccCcchhHHHHHHHHHH-----hhhhhcCCCCC-----hhhhhcccHHHHHHHHHHHHhc
Q 011578 429 RREMNGGLVDPMLVNAREN-----LDLRLSFDCLD-----TDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 429 ~~~~~~~~l~~~~~~a~~~-----~~~r~~~~~~~-----~~~~~~i~~~d~~~al~~~~~~ 480 (482)
...|..+.+.++-+..... ....+...... .-..++++.+||..|...|.++
T Consensus 301 kelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 301 KELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred HHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 6555444444443322221 00000000000 0126799999999999976653
No 15
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-32 Score=236.22 Aligned_cols=235 Identities=21% Similarity=0.300 Sum_probs=193.0
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..++-++|.+..++.|++. +..|-.+++++..++...|.++|||||||||||.+|+++|+.... .|+.++
T Consensus 144 StYeMiGgLd~QIkeIkEV---IeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c-------~firvs 213 (404)
T KOG0728|consen 144 STYEMIGGLDKQIKEIKEV---IELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-------TFIRVS 213 (404)
T ss_pred cHHHHhccHHHHHHHHHHH---HhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce-------EEEEec
Confidence 4566678888888877776 778889999999999999999999999999999999999998876 899999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
+++++.+|+|+....++++|-.|+ ++|||.||||++.++|..++ +...++..-+||.++|+ +.+-||+||
T Consensus 214 gselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimat 293 (404)
T KOG0728|consen 214 GSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMAT 293 (404)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEec
Confidence 999999999999999999997664 59999999999999886432 34445666677777776 678999996
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+.-++ + ||+|++ |+|+.|+||+|+.+.|.+|++.+-+++. +..+++...+++...
T Consensus 294 nridi--l---d~allrpgridrkiefp~p~e~ar~~ilkihsrkmn---------l~rgi~l~kiaekm~--------- 350 (404)
T KOG0728|consen 294 NRIDI--L---DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN---------LTRGINLRKIAEKMP--------- 350 (404)
T ss_pred ccccc--c---cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhc---------hhcccCHHHHHHhCC---------
Confidence 55444 3 899887 9999999999999999999999988764 456677666555544
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
.+.|++++.++-+|-..+ -++....+|.+||+-|..++..
T Consensus 351 gasgaevk~vcteagm~a---------lrerrvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 351 GASGAEVKGVCTEAGMYA---------LRERRVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred CCccchhhhhhhhhhHHH---------HHHhhccccHHHHHHHHHHHHh
Confidence 566899999998887765 2244567999999999888754
No 16
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.1e-32 Score=245.25 Aligned_cols=205 Identities=19% Similarity=0.233 Sum_probs=167.9
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeE
Q 011578 200 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 279 (482)
Q Consensus 200 ~~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 279 (482)
..--.|+++.|++..|+.|++. +..|...+.++..- ..+..++||||||||||+.||+++|-+.+. .|+
T Consensus 127 KPNVkWsDVAGLE~AKeALKEA---VILPIKFPqlFtGk-R~PwrgiLLyGPPGTGKSYLAKAVATEAnS-------TFF 195 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEA---VILPIKFPQLFTGK-RKPWRGILLYGPPGTGKSYLAKAVATEANS-------TFF 195 (439)
T ss_pred CCCCchhhhccchhHHHHHHhh---eeecccchhhhcCC-CCcceeEEEeCCCCCcHHHHHHHHHhhcCC-------ceE
Confidence 3446799999999999999986 66666666665533 246789999999999999999999998876 899
Q ss_pred EeecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-----CcEEEEEe
Q 011578 280 EVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFA 351 (482)
Q Consensus 280 ~~~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~~vi~~ 351 (482)
.++.++++++|.|++++.++++|+.|+ ++||||||||.++.+|..++++..+++-.+||.+|++ ..+.|.+|
T Consensus 196 SvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgA 275 (439)
T KOG0739|consen 196 SVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGA 275 (439)
T ss_pred EeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEec
Confidence 999999999999999999999998775 5999999999999999999999999999999999986 33556666
Q ss_pred cCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhh
Q 011578 352 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 428 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 428 (482)
|+..... |.+++|||+.+|.+|.|....|..+++.++...+- .++ +-+...|...++++++++.
T Consensus 276 TNiPw~L-----DsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~-------~LT-~~d~~eL~~kTeGySGsDi 339 (439)
T KOG0739|consen 276 TNIPWVL-----DSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPH-------VLT-EQDFKELARKTEGYSGSDI 339 (439)
T ss_pred CCCchhH-----HHHHHHHhhcceeccCCcHHHhhhhheeccCCCcc-------ccc-hhhHHHHHhhcCCCCcCce
Confidence 5544433 88999999999999999999999999999987652 122 2255556666666654443
No 17
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-32 Score=241.46 Aligned_cols=236 Identities=20% Similarity=0.267 Sum_probs=196.4
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...+.+++|+.+.++.+++. +..|..+++.+..++..+|+++|+|||||||||..||++|+.... .|+.+
T Consensus 173 dvty~dvggckeqieklrev---ve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda-------cfirv 242 (435)
T KOG0729|consen 173 DVTYSDVGGCKEQIEKLREV---VELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA-------CFIRV 242 (435)
T ss_pred CcccccccchHHHHHHHHHH---HhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc-------eEEee
Confidence 45678899999988888887 677778888888899999999999999999999999999997765 89999
Q ss_pred ecccccccccccchhhHHHHHHhcCC---cEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~~---~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
-+|+++.+|+|+....++++|+.|+. ||||+||||.+...|..++ +...++..-+|+.++|+ |.+-|++|
T Consensus 243 igselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlma 322 (435)
T KOG0729|consen 243 IGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMA 322 (435)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEee
Confidence 99999999999999999999998865 9999999999999887553 33445555666677775 78888888
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+..... +|+|.+ |+|+.++|..||.+.|..|++.+.+.+ .+..++..+.++.++...+
T Consensus 323 tnrpdtl-----dpallrpgrldrkvef~lpdlegrt~i~kihaksm---------sverdir~ellarlcpnst----- 383 (435)
T KOG0729|consen 323 TNRPDTL-----DPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM---------SVERDIRFELLARLCPNST----- 383 (435)
T ss_pred cCCCCCc-----CHhhcCCcccccceeccCCcccccceeEEEecccc---------ccccchhHHHHHhhCCCCc-----
Confidence 7765554 888887 999999999999999999999987765 3556777788888887554
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
|+++++++-+|-..+. .......|+.||.+|..++.+
T Consensus 384 ----gaeirsvcteagmfai---------rarrk~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 384 ----GAEIRSVCTEAGMFAI---------RARRKVATEKDFLDAVNKVVK 420 (435)
T ss_pred ----chHHHHHHHHhhHHHH---------HHHhhhhhHHHHHHHHHHHHH
Confidence 7889999988877652 234457899999999998754
No 18
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-31 Score=234.12 Aligned_cols=236 Identities=24% Similarity=0.312 Sum_probs=193.2
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...+++|+|++..++.+.+ .+..+..+++.+..++..+|+++|+|||||||||++||+.|..... .|+.+
T Consensus 167 tE~YsDiGGldkQIqELvE---AiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a-------TFLKL 236 (424)
T KOG0652|consen 167 TEQYSDIGGLDKQIQELVE---AIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA-------TFLKL 236 (424)
T ss_pred cccccccccHHHHHHHHHH---HhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc-------hHHHh
Confidence 4567889999977766665 4788888999999999999999999999999999999999987776 88899
Q ss_pred ecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCC---hhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDK---DYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~---~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
.++.++..|+|+..+.+++.|..|+ ++||||||+|.+..+|..++. ...++..-+||.++|+ .++-||+|
T Consensus 237 AgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAA 316 (424)
T KOG0652|consen 237 AGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAA 316 (424)
T ss_pred cchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEee
Confidence 9999999999999999999998775 499999999999999875432 3334555566666776 56899999
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+.-.+. +|+|++ |+|+.|+||.|+.+.|.+|++.+-+++. +.+++..+.++.-+.
T Consensus 317 TNRvDiL-----DPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMn---------v~~DvNfeELaRsTd-------- 374 (424)
T KOG0652|consen 317 TNRVDIL-----DPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMN---------VSDDVNFEELARSTD-------- 374 (424)
T ss_pred ccccccc-----CHHHhhcccccccccCCCCChHHHHHHHHHhhhhcC---------CCCCCCHHHHhhccc--------
Confidence 6655443 899877 9999999999999999999999988764 556667666655444
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
..||++++.++-+|-..+..|- ...|+-+||.+++.+++.
T Consensus 375 -dFNGAQcKAVcVEAGMiALRr~---------atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 375 -DFNGAQCKAVCVEAGMIALRRG---------ATEVTHEDFMEGILEVQA 414 (424)
T ss_pred -ccCchhheeeehhhhHHHHhcc---------cccccHHHHHHHHHHHHH
Confidence 6789999999888888775552 257999999999988864
No 19
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3e-31 Score=271.63 Aligned_cols=240 Identities=24% Similarity=0.350 Sum_probs=199.6
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++++|.+..|+.+++. +.++..+.+.....+..++.++||+||||||||++|+++|++++. +|+.+
T Consensus 238 ~v~~~diggl~~~k~~l~e~---v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~-------~fi~v 307 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEA---IETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRS-------RFISV 307 (494)
T ss_pred CcceehhhcHHHHHHHHHHH---HHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCC-------eEEEe
Confidence 46788899999999999987 555556666555455667889999999999999999999998876 99999
Q ss_pred ecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecCc
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYS 354 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~ 354 (482)
..+++.++|+|+++++++++|..|+ +|||||||+|++.+.|+.+.+....+++++|+..|++ ..++||+||+.
T Consensus 308 ~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~ 387 (494)
T COG0464 308 KGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNR 387 (494)
T ss_pred eCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCC
Confidence 9999999999999999999999886 5999999999999999877776778999999999975 55777887655
Q ss_pred hhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcccc
Q 011578 355 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 432 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 432 (482)
.... +|++++ |||..|.||+||.++|.+|++.++.+... .+..+++...+++++++ .
T Consensus 388 p~~l-----d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~-------~~~~~~~~~~l~~~t~~---------~ 446 (494)
T COG0464 388 PDDL-----DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKP-------PLAEDVDLEELAEITEG---------Y 446 (494)
T ss_pred cccc-----CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCC-------cchhhhhHHHHHHHhcC---------C
Confidence 4443 899999 99999999999999999999999986531 13346677777776664 4
Q ss_pred CcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHhc
Q 011578 433 NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 433 ~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
.|+++.+++++|......+.. ...+|.+||.+|+++++|+
T Consensus 447 sgadi~~i~~ea~~~~~~~~~--------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 447 SGADIAALVREAALEALREAR--------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHhc--------cCCccHHHHHHHHHhcCCC
Confidence 588999999999888644322 4579999999999998885
No 20
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.6e-32 Score=222.47 Aligned_cols=174 Identities=29% Similarity=0.378 Sum_probs=158.1
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHH
Q 011578 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A 92 (482)
+.++.+.+|.......|++++...+..+|.+++..|+|||||||..|+.+++.+|+.+ .+..+|.+|..||||||+|
T Consensus 3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq---~nv~~ddkDdaGWtPlhia 79 (226)
T KOG4412|consen 3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ---PNVKPDDKDDAGWTPLHIA 79 (226)
T ss_pred ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhc---CCCCCCCccccCCchhhhh
Confidence 4678899999999999999999888888999986799999999999999999999974 7899999999999999999
Q ss_pred HHcCCHHHHHHHHhC-CCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHH
Q 011578 93 AKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKL 171 (482)
Q Consensus 93 ~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~ 171 (482)
|..|+.++|+.|+.+ |+|+|..++.|.||||+|+ .+|..+++++|+++|+.++++|..|.||||.||+ -|...+
T Consensus 80 ~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAa----gK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAa-vGklkv 154 (226)
T KOG4412|consen 80 ASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAA----GKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAA-VGKLKV 154 (226)
T ss_pred hhcCcHHHHHHHhcCCCCCcceecCCCcceehhhh----cCChhhHHHHHHhcCCCCcccccccCchhHHHHh-ccchhh
Confidence 999999999999998 9999999999999999999 9999999999999999999999999999977766 567788
Q ss_pred HHHHHhhhHHHHHHhhHhhhhhh
Q 011578 172 RELLLWHSEEQRKRRALEACSET 194 (482)
Q Consensus 172 ~~lL~~~~~~~~~~~~~~~~~~~ 194 (482)
+++|...++..+.+.....++-.
T Consensus 155 ie~Li~~~a~~n~qDk~G~TpL~ 177 (226)
T KOG4412|consen 155 IEYLISQGAPLNTQDKYGFTPLH 177 (226)
T ss_pred HHHHHhcCCCCCcccccCccHHH
Confidence 89999998887777655555443
No 21
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.2e-32 Score=240.78 Aligned_cols=235 Identities=20% Similarity=0.321 Sum_probs=190.6
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...+.+++|++..++.|++. +..|..+++++..++..+|.+|+|||+||||||.||+++|+.... .|+.+
T Consensus 181 ~Ety~diGGle~QiQEiKEs---vELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSA-------TFlRv 250 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKES---VELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSA-------TFLRV 250 (440)
T ss_pred hhhhcccccHHHHHHHHHHh---hcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccch-------hhhhh
Confidence 46788999999998888876 778888899999999999999999999999999999999996655 89999
Q ss_pred ecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHH---HHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEA---LEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~---~~~ll~~l~~----~~~~vi~~ 351 (482)
.+++++.+|.|+..+.++++|.-|. ++|+||||||.+..+|.+..+...+++ .-+||.++|+ +.+-||+|
T Consensus 251 vGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimA 330 (440)
T KOG0726|consen 251 VGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 330 (440)
T ss_pred hhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEe
Confidence 9999999999999999999998764 599999999999999875444433444 4455556665 78999999
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+ .++.+ ||+|.+ |+|+.|+||.||...+..||..+..++ .+..++..+.+-.--
T Consensus 331 Tn--rie~L---DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~M---------tl~~dVnle~li~~k--------- 387 (440)
T KOG0726|consen 331 TN--RIETL---DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRM---------TLAEDVNLEELIMTK--------- 387 (440)
T ss_pred cc--ccccc---CHhhcCCCccccccccCCCchhhhceeEEEeeccc---------chhccccHHHHhhcc---------
Confidence 44 44444 999988 999999999999999999999887765 344555544332221
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
....|++|++++-+|-..+ -++....++.+||..|.+.+.
T Consensus 388 ddlSGAdIkAictEaGllA---------lRerRm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 388 DDLSGADIKAICTEAGLLA---------LRERRMKVTMEDFKKAKEKVL 427 (440)
T ss_pred cccccccHHHHHHHHhHHH---------HHHHHhhccHHHHHHHHHHHH
Confidence 2467899999999987765 235567899999999988874
No 22
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=3.4e-30 Score=257.06 Aligned_cols=235 Identities=21% Similarity=0.323 Sum_probs=183.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+|+.+.+....+ ...... ++...+.++||+||||||||++|+++|++++. +++.++
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~----~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~-------~~~~l~ 291 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSF--SKQASN----YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL-------PLLRLD 291 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHh--hHHHHh----cCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEE
Confidence 46889999999999998764332 112222 34457889999999999999999999999876 899999
Q ss_pred cccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCC-CCChhHHHHHHHHHhhhcC--CcEEEEEecCchh
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKA-DDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP 356 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~-~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~ 356 (482)
.+.+.++|+|+++.+++++|..+ .+|||||||||+++..++. +++....+++++|++.|++ ..++||+||+..
T Consensus 292 ~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~- 370 (489)
T CHL00195 292 VGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNI- 370 (489)
T ss_pred hHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCCh-
Confidence 99999999999999999999765 4599999999999876543 3455667899999999975 446666664432
Q ss_pred HHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 357 MKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 357 ~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
..+ +|++++ |||..|+++.|+.++|.+|++.++++... ....+++.+.++..+. ..+|
T Consensus 371 -~~L---d~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~-------~~~~~~dl~~La~~T~---------GfSG 430 (489)
T CHL00195 371 -DLL---PLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP-------KSWKKYDIKKLSKLSN---------KFSG 430 (489)
T ss_pred -hhC---CHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC-------CcccccCHHHHHhhcC---------CCCH
Confidence 333 888876 99999999999999999999999987531 1112445566666655 4568
Q ss_pred chhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHhcC
Q 011578 435 GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 435 ~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~~~ 481 (482)
++|++++..|...+.. +...++.+||.+|++++.|+.
T Consensus 431 AdI~~lv~eA~~~A~~----------~~~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 431 AEIEQSIIEAMYIAFY----------EKREFTTDDILLALKQFIPLA 467 (489)
T ss_pred HHHHHHHHHHHHHHHH----------cCCCcCHHHHHHHHHhcCCCc
Confidence 8999999988776521 224699999999999999974
No 23
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=3.4e-30 Score=252.02 Aligned_cols=236 Identities=21% Similarity=0.287 Sum_probs=188.8
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++++|++.+++++++. +..+..+++.+..++..++.++||+||||||||++|+++|+.+.. +|+.+
T Consensus 141 ~v~~~digGl~~~k~~l~~~---v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~-------~fi~i 210 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREA---VELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA-------TFIRV 210 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHH---HHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-------CEEEE
Confidence 35789999999999999987 444555555555566678899999999999999999999998765 88999
Q ss_pred ecccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
.++.+..+|+|+++..++++|..+ .++||||||+|.+..++.+. .+....+++.+|+..|++ ..++||++
T Consensus 211 ~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~a 290 (398)
T PTZ00454 211 VGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMA 290 (398)
T ss_pred ehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEe
Confidence 999999999999999999999776 45999999999998876432 233456788899998875 45777777
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+.. +.+ +|++++ ||+..|+|+.|+.++|.+|++.++.+. .+..+++.+.++..+.
T Consensus 291 TN~~--d~L---DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~---------~l~~dvd~~~la~~t~-------- 348 (398)
T PTZ00454 291 TNRA--DTL---DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM---------NLSEEVDLEDFVSRPE-------- 348 (398)
T ss_pred cCCc--hhC---CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC---------CCCcccCHHHHHHHcC--------
Confidence 5533 333 888876 999999999999999999999988764 2445667666666555
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
..++++|++++.+|...+..+ ....|+.+||.+|++++..
T Consensus 349 -g~sgaDI~~l~~eA~~~A~r~---------~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 349 -KISAADIAAICQEAGMQAVRK---------NRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred -CCCHHHHHHHHHHHHHHHHHc---------CCCccCHHHHHHHHHHHHh
Confidence 456899999999998876433 2357999999999999754
No 24
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-30 Score=255.50 Aligned_cols=216 Identities=20% Similarity=0.282 Sum_probs=184.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
-.|+++.|+.++|+.+.+. +.+|.+.+..+...+...+.++|||||||||||.+|-++|..++. .|+.+.
T Consensus 664 i~w~digg~~~~k~~l~~~---i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~-------~fisvK 733 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEV---IEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL-------RFISVK 733 (952)
T ss_pred CCceecccHHHHHHHHHHH---HhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe-------eEEEec
Confidence 5689999999999999987 677788888888888888899999999999999999999998876 899999
Q ss_pred cccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecCch
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE 355 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~~ 355 (482)
++++.++|+|.++.++|.+|+.| ++||||+||+|+++|+|+.+++....+++|+||++||+ .-|.|++||+..
T Consensus 734 GPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRp 813 (952)
T KOG0735|consen 734 GPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRP 813 (952)
T ss_pred CHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCc
Confidence 99999999999999999999876 56999999999999999999999999999999999998 346777776655
Q ss_pred hHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccC
Q 011578 356 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 433 (482)
Q Consensus 356 ~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (482)
++. ||+|+| |+|..+.-|.|++.+|.+|++...... .++..++.+-++..+.+++
T Consensus 814 dli-----DpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~---------~~~~~vdl~~~a~~T~g~t--------- 870 (952)
T KOG0735|consen 814 DLI-----DPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL---------LKDTDVDLECLAQKTDGFT--------- 870 (952)
T ss_pred ccc-----CHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc---------CCccccchHHHhhhcCCCc---------
Confidence 553 899988 999999999999999999999876543 3456778888888888766
Q ss_pred cchhHHHHHHHHHHhhhh
Q 011578 434 GGLVDPMLVNARENLDLR 451 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~~~r 451 (482)
|+++..++-.|...+..+
T Consensus 871 gADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 871 GADLQSLLYNAQLAAVHE 888 (952)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 566666666665554433
No 25
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=3.2e-30 Score=274.73 Aligned_cols=246 Identities=22% Similarity=0.306 Sum_probs=195.8
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++++|++.+|+.|.+. +.++..+++....++..++.++|||||||||||++|+++|++++. +|+.+
T Consensus 449 ~~~~~di~g~~~~k~~l~~~---v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~-------~fi~v 518 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREA---VEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA-------NFIAV 518 (733)
T ss_pred ccchhhcccHHHHHHHHHHH---HHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-------CEEEE
Confidence 34789999999999999987 444445555555556667889999999999999999999998875 89999
Q ss_pred ecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC-CChhHHHHHHHHHhhhcC----CcEEEEEecC
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD-DKDYGIEALEEIMSVMDG----GKVVVIFAGY 353 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~-~~~~~~~~~~~ll~~l~~----~~~~vi~~~~ 353 (482)
.++++.++|+|++++.++++|..|+ ++||||||+|.+++.++.. ++....+++++|+..|++ ..++||+||+
T Consensus 519 ~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn 598 (733)
T TIGR01243 519 RGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATN 598 (733)
T ss_pred ehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCC
Confidence 9999999999999999999998764 5999999999999988744 344567899999999985 5688888865
Q ss_pred chhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 354 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
.... + +|++++ ||+..|+||.|+.++|.+||+.++++. .+..+++.+.++..+.+
T Consensus 599 ~~~~--l---d~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~---------~~~~~~~l~~la~~t~g--------- 655 (733)
T TIGR01243 599 RPDI--L---DPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM---------PLAEDVDLEELAEMTEG--------- 655 (733)
T ss_pred Chhh--C---CHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC---------CCCccCCHHHHHHHcCC---------
Confidence 4433 2 899986 999999999999999999999887654 34556677777777664
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCCC----CC-----hhhhhcccHHHHHHHHHHHHhc
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFDC----LD-----TDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~~----~~-----~~~~~~i~~~d~~~al~~~~~~ 480 (482)
..|+++.+++.+|...+..+..... .. ..+...|+.+||.+|+++++|.
T Consensus 656 ~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps 713 (733)
T TIGR01243 656 YTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPS 713 (733)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCC
Confidence 4578888888888887666532211 00 1123479999999999999885
No 26
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-29 Score=257.18 Aligned_cols=233 Identities=22% Similarity=0.331 Sum_probs=191.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
-.|+|+.|++++|+.|.+++..++.|.+...+| +..|+++||+||||||||+||||+|.+.+. ||+.++
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lG----AKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svS 376 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELG----AKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVS 376 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcC----CcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeec
Confidence 578999999999999999999998888877755 567899999999999999999999999988 999999
Q ss_pred cccccccccccchhhHHHHHHhcCC---cEEEEecccccccCCCC----CCChhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPMQKA----DDKDYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~---~vl~iDE~d~l~~~~~~----~~~~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
+++++..++|....+++++|..|+. ||+||||||.+...|+. .+++.....+|+||..||+ +.++++++
T Consensus 377 GSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~ 456 (774)
T KOG0731|consen 377 GSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAA 456 (774)
T ss_pred hHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEec
Confidence 9999999999999999999998864 99999999999998852 3455667889999999997 45777777
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+..+.. ||+|++ |||+.|.++.|+..+|.+|++.++++... . ...++...++.++.
T Consensus 457 tnr~d~l-----d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~-------~-~e~~dl~~~a~~t~-------- 515 (774)
T KOG0731|consen 457 TNRPDIL-----DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL-------D-DEDVDLSKLASLTP-------- 515 (774)
T ss_pred cCCcccc-----CHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC-------C-cchhhHHHHHhcCC--------
Confidence 6655554 889888 99999999999999999999999987531 1 23334333444444
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
...|++|.|++.+|...++. .....|+.+||..|++++
T Consensus 516 -gf~gadl~n~~neaa~~a~r---------~~~~~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 516 -GFSGADLANLCNEAALLAAR---------KGLREIGTKDLEYAIERV 553 (774)
T ss_pred -CCcHHHHHhhhhHHHHHHHH---------hccCccchhhHHHHHHHH
Confidence 44578888888888776533 344679999999999854
No 27
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=1.4e-29 Score=249.31 Aligned_cols=236 Identities=22% Similarity=0.306 Sum_probs=189.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|.+..++.+.+. +..+..+++.+..++..++.++||+||||||||++|+++|+.++. +|+.++
T Consensus 128 ~~~~di~Gl~~~~~~l~~~---i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~-------~~i~v~ 197 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREA---VELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA-------TFIRVV 197 (389)
T ss_pred CCHHHhCCcHHHHHHHHHH---HHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC-------CEEEee
Confidence 4678999999999999987 445556666666677788999999999999999999999998865 899999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
++++..+|+|+++..++++|..+. ++||||||+|.+.+++..+. +....+.+.+|+..+++ +.++||+||
T Consensus 198 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aT 277 (389)
T PRK03992 198 GSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAAT 277 (389)
T ss_pred hHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEec
Confidence 999999999999999999998764 49999999999998776432 23345667788887774 578888886
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+... .+ +|++++ ||+..|+||.|+.++|.+|++.++++. .+..+++...++..+.+
T Consensus 278 n~~~--~l---d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~---------~~~~~~~~~~la~~t~g-------- 335 (389)
T PRK03992 278 NRID--IL---DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM---------NLADDVDLEELAELTEG-------- 335 (389)
T ss_pred CChh--hC---CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC---------CCCCcCCHHHHHHHcCC--------
Confidence 5443 23 888876 999999999999999999999988754 23445676777766654
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHhc
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
.+++++++++.+|...+..+ ....|+.+||.+|++++++.
T Consensus 336 -~sgadl~~l~~eA~~~a~~~---------~~~~i~~~d~~~A~~~~~~~ 375 (389)
T PRK03992 336 -ASGADLKAICTEAGMFAIRD---------DRTEVTMEDFLKAIEKVMGK 375 (389)
T ss_pred -CCHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHHhcc
Confidence 45889999999998876333 23469999999999999875
No 28
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.96 E-value=4.3e-29 Score=245.39 Aligned_cols=235 Identities=20% Similarity=0.306 Sum_probs=186.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++|+|++..++.+.+.+ ..+..+++.+..++..++.++||+||||||||++|+++|+++.. +|+.+.
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v---~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~-------~fi~V~ 249 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAV---ELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA-------TFLRVV 249 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHH---HhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC-------CEEEEe
Confidence 57889999999999999874 44555666656666778899999999999999999999998765 789999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
.+++..+|+|++...++++|..+. ++||||||||.+..++.... .....+.+..|+..+++ ..++||+||
T Consensus 250 ~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~AT 329 (438)
T PTZ00361 250 GSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMAT 329 (438)
T ss_pred cchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEec
Confidence 999999999999999999998763 48999999999998775322 23345667778888864 567888885
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+. .+.+ +|++++ ||+..|+|+.||.++|.+||+.++.+.. +..+++.+.++..+.
T Consensus 330 Nr--~d~L---DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~---------l~~dvdl~~la~~t~--------- 386 (438)
T PTZ00361 330 NR--IESL---DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMT---------LAEDVDLEEFIMAKD--------- 386 (438)
T ss_pred CC--hHHh---hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCC---------CCcCcCHHHHHHhcC---------
Confidence 53 3333 888875 9999999999999999999999987653 345666666666555
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
..+++++++++..|...+..+ ....|+.+||..|+.++..
T Consensus 387 g~sgAdI~~i~~eA~~~Alr~---------~r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 387 ELSGADIKAICTEAGLLALRE---------RRMKVTQADFRKAKEKVLY 426 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHh---------cCCccCHHHHHHHHHHHHh
Confidence 456889999999988876332 2357999999999999853
No 29
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=2e-28 Score=243.69 Aligned_cols=261 Identities=19% Similarity=0.219 Sum_probs=193.1
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---CCCCe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRV 278 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~---~~~~~ 278 (482)
...|++|+|++..++++++. +..+..+++.+..++..++.++|||||||||||++|+++|+.+...... ....|
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~---v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDA---VELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred CCCHHHcCChHHHHHHHHHH---HHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 35789999999999999987 4455666666666777788999999999999999999999998653221 23456
Q ss_pred EEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCC-CChhHHHHHHHHHhhhcC----CcE
Q 011578 279 TEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKAD-DKDYGIEALEEIMSVMDG----GKV 346 (482)
Q Consensus 279 ~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~-~~~~~~~~~~~ll~~l~~----~~~ 346 (482)
+.+..+++.++|+|+++..++.+|..+ .++||||||+|.++++|+.+ +++....++++|+..|++ +.+
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 778888999999999999999998765 35899999999999887654 355567888999999986 567
Q ss_pred EEEEecCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHh
Q 011578 347 VVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 424 (482)
Q Consensus 347 ~vi~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 424 (482)
+||+||+.. +.+ ||+++| |||.+|+|+.|+.+++.+|++.++.+.... ...+......+...+..+++...
T Consensus 335 iVI~ATN~~--d~L---DpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l--~~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 335 IVIGASNRE--DMI---DPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL--DADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred EEEeccCCh--hhC---CHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc--hHHHHHhcCCCHHHHHHHHHHHH
Confidence 888886543 333 999988 999999999999999999999998752110 00111112334444455544432
Q ss_pred hHh-----------------------hccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 425 TEK-----------------------QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 425 ~~~-----------------------~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
... ......|+.+++++++|...+..+.... ...-|+.+|+..|+..-
T Consensus 408 ~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~-----~~~~~~~~~l~~a~~~e 478 (512)
T TIGR03689 408 DHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG-----GQVGLRIEHLLAAVLDE 478 (512)
T ss_pred HHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc-----CCcCcCHHHHHHHHHHh
Confidence 110 1223579999999999999987775421 12478899999888753
No 30
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-28 Score=244.21 Aligned_cols=235 Identities=23% Similarity=0.320 Sum_probs=194.3
Q ss_pred HHHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEE
Q 011578 201 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (482)
Q Consensus 201 ~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 280 (482)
....|.++.|.++.|+.+.+.+..++.|.+...+|. .-|.+++|.||||||||++||++|.+.+. ||+.
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGa----kiPkGvlLvGpPGTGKTLLAkAvAgEA~V-------PFf~ 213 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGA----KIPKGVLLVGPPGTGKTLLAKAVAGEAGV-------PFFS 213 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhccc----ccccceeEecCCCCCcHHHHHHHhcccCC-------Ccee
Confidence 346799999999999999999998988887776555 56789999999999999999999998887 9999
Q ss_pred eecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCC---CCChhHHHHHHHHHhhhcCC----cEEEEE
Q 011578 281 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKA---DDKDYGIEALEEIMSVMDGG----KVVVIF 350 (482)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~---~~~~~~~~~~~~ll~~l~~~----~~~vi~ 350 (482)
++.|+++..++|-..+.+|++|++|+ +||+||||+|.+...|.. ++++.-.+.+|+||..||+. -+++++
T Consensus 214 iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivia 293 (596)
T COG0465 214 ISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIA 293 (596)
T ss_pred ccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEe
Confidence 99999999999999999999999886 599999999999998863 35666778999999999983 356666
Q ss_pred ecCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhh
Q 011578 351 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 428 (482)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 428 (482)
+|+..+.. ||+|+| |||+.|.++.||...|++|++.++++. .+.+.++...+++.+.+.+
T Consensus 294 aTNRpdVl-----D~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~---------~l~~~Vdl~~iAr~tpGfs---- 355 (596)
T COG0465 294 ATNRPDVL-----DPALLRPGRFDRQILVELPDIKGREQILKVHAKNK---------PLAEDVDLKKIARGTPGFS---- 355 (596)
T ss_pred cCCCcccc-----hHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcC---------CCCCcCCHHHHhhhCCCcc----
Confidence 65444443 888888 999999999999999999999988765 4567788888777777655
Q ss_pred ccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 429 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 429 ~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
|+++.|++.+|.-.++.+ ....|+..||.+|.+++.
T Consensus 356 -----GAdL~nl~NEAal~aar~---------n~~~i~~~~i~ea~drv~ 391 (596)
T COG0465 356 -----GADLANLLNEAALLAARR---------NKKEITMRDIEEAIDRVI 391 (596)
T ss_pred -----cchHhhhHHHHHHHHHHh---------cCeeEeccchHHHHHHHh
Confidence 677777777766655332 235688888888887763
No 31
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.4e-29 Score=238.74 Aligned_cols=220 Identities=21% Similarity=0.284 Sum_probs=185.5
Q ss_pred CCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCC--------
Q 011578 236 LKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG-------- 307 (482)
Q Consensus 236 ~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~-------- 307 (482)
..++..+-+++|||||||||||.+||.|.+.|+..- | -.++++++.++|||+++.++|++|..|+.
T Consensus 249 e~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAre-----P-KIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~ 322 (744)
T KOG0741|consen 249 EQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNARE-----P-KIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGAN 322 (744)
T ss_pred HHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCC-----C-cccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCcc
Confidence 345667888999999999999999999999987522 2 24788999999999999999999987732
Q ss_pred ---cEEEEecccccccCCCCC--CChhHHHHHHHHHhhhcC----CcEEEEEecCchhHHHHHhcCccccC--CCcceee
Q 011578 308 ---GILFVDEAYRLIPMQKAD--DKDYGIEALEEIMSVMDG----GKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFH 376 (482)
Q Consensus 308 ---~vl~iDE~d~l~~~~~~~--~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~~~~~~~~~~~~~l~~--R~~~~i~ 376 (482)
-||++||+|.++..|++. ++..+..++|+||..||+ +.+.||+-|+..++. |++|+| ||...++
T Consensus 323 SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlI-----DEALLRPGRlEVqmE 397 (744)
T KOG0741|consen 323 SGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLI-----DEALLRPGRLEVQME 397 (744)
T ss_pred CCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhH-----HHHhcCCCceEEEEE
Confidence 599999999999998854 356778999999999998 889999987776665 777777 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcC-C
Q 011578 377 FNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSF-D 455 (482)
Q Consensus 377 ~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~-~ 455 (482)
+..||.+.|.+|++.+.+++.. .-.+..+++.+.|+.++..++ |++|..+|..|...+.+|... +
T Consensus 398 IsLPDE~gRlQIl~IHT~rMre-----~~~l~~dVdl~elA~lTKNfS---------GAEleglVksA~S~A~nR~vk~~ 463 (744)
T KOG0741|consen 398 ISLPDEKGRLQILKIHTKRMRE-----NNKLSADVDLKELAALTKNFS---------GAELEGLVKSAQSFAMNRHVKAG 463 (744)
T ss_pred EeCCCccCceEEEEhhhhhhhh-----cCCCCCCcCHHHHHHHhcCCc---------hhHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999998863 337888999999999999765 889999999999999988642 1
Q ss_pred -----CCChhhhhcccHHHHHHHHHHHHhc
Q 011578 456 -----CLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 456 -----~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
.+...+...|+.+||..||.+++|.
T Consensus 464 ~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA 493 (744)
T KOG0741|consen 464 GKVEVDPVAIENLKVTRGDFLNALEDVKPA 493 (744)
T ss_pred cceecCchhhhheeecHHHHHHHHHhcCcc
Confidence 1223456689999999999999984
No 32
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.95 E-value=7e-28 Score=245.78 Aligned_cols=234 Identities=22% Similarity=0.326 Sum_probs=183.9
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++++|++.+++++.+++..+..+...... +...+.++||+||||||||++|+++|++++. +|+.+
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~----g~~~~~giLL~GppGtGKT~la~alA~~~~~-------~~~~i 119 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKL----GAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV-------PFFSI 119 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhc----CCCCCCcEEEECCCCCCHHHHHHHHHHHcCC-------Ceeec
Confidence 357899999999999999987776655555443 3456789999999999999999999998765 89999
Q ss_pred ecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
+++++...++|.+...++++|+.+. ++||||||+|.+.++++.+ .++...+++++|+..|++ +.++||+|
T Consensus 120 ~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~a 199 (495)
T TIGR01241 120 SGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAA 199 (495)
T ss_pred cHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEe
Confidence 9999999999999999999998764 4999999999999887642 244566889999999975 45777777
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+... .+ +|++++ |||..|+|+.|+.++|.+|++.++.... +..+++...++..+.
T Consensus 200 Tn~~~--~l---d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~---------~~~~~~l~~la~~t~-------- 257 (495)
T TIGR01241 200 TNRPD--VL---DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK---------LAPDVDLKAVARRTP-------- 257 (495)
T ss_pred cCChh--hc---CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC---------CCcchhHHHHHHhCC--------
Confidence 64433 23 888876 9999999999999999999999987642 223344444444443
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
..+++++++++++|...+..+ ....|+.+||++|++.+.
T Consensus 258 -G~sgadl~~l~~eA~~~a~~~---------~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 258 -GFSGADLANLLNEAALLAARK---------NKTEITMNDIEEAIDRVI 296 (495)
T ss_pred -CCCHHHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHHh
Confidence 456789999999886654221 224699999999999875
No 33
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.95 E-value=8.3e-29 Score=241.59 Aligned_cols=170 Identities=28% Similarity=0.352 Sum_probs=151.8
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.|+|||||.+++++++++|++ ++.++|......+.|||||||++|+..+|.+|++ .|++++.+|.+|.
T Consensus 72 ~~~D~~g~tlLHWAAiNNrl~v~r~li~-~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlq----hGAdpt~~D~~G~ 146 (600)
T KOG0509|consen 72 NNPDREGVTLLHWAAINNRLDVARYLIS-HGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQ----HGADPTLKDKQGL 146 (600)
T ss_pred CCCCcCCccceeHHHHcCcHHHHHHHHH-cCCCccccCCCCCCCcchHHHHcCcHHHHHHHHH----cCCCCceecCCCC
Confidence 3455689999999999999999999994 5777999987779999999999999999999999 5889999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccC-CCCCChhhhhhcC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPLDHLSNG 165 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d-~~g~tpl~~~a~~ 165 (482)
||||+||+.|+.-+|-||+.+|+|+|.+|.+|+||||+|+ .+|+...+..|++.|++++..| ..|.||||+++..
T Consensus 147 ~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAa----ykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~ 222 (600)
T KOG0509|consen 147 TPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAA----YKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVG 222 (600)
T ss_pred cHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHH----HhcccHHHHHHHHhcccccccccccCCchHHHHHhc
Confidence 9999999999999999999999999999999999999999 7777777999999999999998 8999999777776
Q ss_pred CCChHHHHHHHhhhHHHHHHh
Q 011578 166 PGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 166 ~~~~~~~~lL~~~~~~~~~~~ 186 (482)
++...+. +|++.|++..+++
T Consensus 223 gN~~~v~-Ll~~g~~~~d~~~ 242 (600)
T KOG0509|consen 223 GNLTAVK-LLLEGGADLDKTN 242 (600)
T ss_pred CCcceEe-hhhhcCCcccccc
Confidence 5555555 8888877766554
No 34
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.1e-28 Score=233.19 Aligned_cols=246 Identities=22% Similarity=0.284 Sum_probs=201.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
-.|+++.|.+.+|+.+.+. +.++..++..+..+.. +..++||+||||||||++++++|.+... .|+.++
T Consensus 150 v~~~di~gl~~~k~~l~e~---vi~p~lr~d~F~glr~-p~rglLLfGPpgtGKtmL~~aiAsE~~a-------tff~iS 218 (428)
T KOG0740|consen 150 VGWDDIAGLEDAKQSLKEA---VILPLLRPDLFLGLRE-PVRGLLLFGPPGTGKTMLAKAIATESGA-------TFFNIS 218 (428)
T ss_pred ccccCCcchhhHHHHhhhh---hhhcccchHhhhcccc-ccchhheecCCCCchHHHHHHHHhhhcc-------eEeecc
Confidence 5688999999999999987 7778888888877764 6779999999999999999999999988 899999
Q ss_pred cccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC------CcEEEEEecC
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGY 353 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~------~~~~vi~~~~ 353 (482)
++.+.++|+|++++.++.+|.-| .++|+||||+|+++.+|..+.++..++...+++-+++. .+|+||+||+
T Consensus 219 assLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN 298 (428)
T KOG0740|consen 219 ASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN 298 (428)
T ss_pred HHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCC
Confidence 99999999999999999999766 45999999999999999877889999999998888875 4677777755
Q ss_pred chhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccC
Q 011578 354 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 433 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (482)
..... |.++++||..++.+|.|+.+.|..++...|++... .+ .+.+.+.++.+++++ +
T Consensus 299 ~P~e~-----Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~-------~l-~~~d~~~l~~~Tegy---------s 356 (428)
T KOG0740|consen 299 RPWEL-----DEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPN-------GL-SDLDISLLAKVTEGY---------S 356 (428)
T ss_pred CchHH-----HHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCC-------Cc-cHHHHHHHHHHhcCc---------c
Confidence 44332 88889999999999999999999999999998631 11 123455566666654 5
Q ss_pred cchhHHHHHHHHHHhhhhhc----CCCCChhhhhcccHHHHHHHHHHHHhcC
Q 011578 434 GGLVDPMLVNARENLDLRLS----FDCLDTDELRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~~~r~~----~~~~~~~~~~~i~~~d~~~al~~~~~~~ 481 (482)
+.++.+++..|..--...+- .+....+..+.++..||+++++.++|..
T Consensus 357 gsdi~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 357 GSDITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred cccHHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhcccc
Confidence 77888888887664332221 2335567788999999999999999864
No 35
>PHA02791 ankyrin-like protein; Provisional
Probab=99.95 E-value=4.6e-28 Score=227.07 Aligned_cols=164 Identities=17% Similarity=0.197 Sum_probs=86.1
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChH
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tp 88 (482)
.+..|.||||+|+..|+.+.++.|+.. +.+++..+ |+||||+|+..|+.+++++|++ .|++++.+|..|+||
T Consensus 26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~-ga~~n~~d---~~TpLh~Aa~~g~~eiV~lLL~----~Gadvn~~d~~G~Tp 97 (284)
T PHA02791 26 ADVHGHSALYYAIADNNVRLVCTLLNA-GALKNLLE---NEFPLHQAATLEDTKIVKILLF----SGMDDSQFDDKGNTA 97 (284)
T ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHC-cCCCcCCC---CCCHHHHHHHCCCHHHHHHHHH----CCCCCCCCCCCCCCH
Confidence 344555555555555555555555532 33333322 4555555555555555555555 344555555555555
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCccccccCC---------------------------------CcceeeehhhccCCChH
Q 011578 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNG---------------------------------MTPLHLSVWYSIRSEDY 135 (482)
Q Consensus 89 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g---------------------------------~tpLh~A~~~~~~~~~~ 135 (482)
||+|+..|+.+++++|+++|++++.++..| +||||+|+ ..|+.
T Consensus 98 Lh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa----~~g~~ 173 (284)
T PHA02791 98 LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITI----KNGHV 173 (284)
T ss_pred HHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHH----HcCCH
Confidence 555555555555555555555555544444 45555555 44555
Q ss_pred HHHHHHhhCCCCccccCCCCCCh-hhhhhcCCCChHHHHHHHhhhHHHHHH
Q 011578 136 ATVKTLLEYNADCSAKDNEGKTP-LDHLSNGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 136 ~~v~~Ll~~gad~~~~d~~g~tp-l~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
+++++|+++|++++.+|..|.|| | |.|+..++.+++++|+.+|++.+.+
T Consensus 174 eiv~lLL~~gAd~n~~d~~g~t~~L-~~Aa~~~~~e~v~lLl~~Ga~in~~ 223 (284)
T PHA02791 174 DMMILLLDYMTSTNTNNSLLFIPDI-KLAIDNKDLEMLQALFKYDINIYSV 223 (284)
T ss_pred HHHHHHHHCCCCCCcccCCCCChHH-HHHHHcCCHHHHHHHHHCCCCCccC
Confidence 55555555555555555555544 4 3333344555555555555554433
No 36
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.1e-28 Score=216.99 Aligned_cols=233 Identities=23% Similarity=0.304 Sum_probs=189.2
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|+.+.|.-.+...+++. +..+...++++..++..+|.++++|||||||||.+|+++|..++. .|+.+.+
T Consensus 130 s~~~~ggl~~qirelre~---ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~-------nfl~v~s 199 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREV---IELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGV-------NFLKVVS 199 (388)
T ss_pred CHHHhCChHHHHHHHHhh---eEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCC-------ceEEeeH
Confidence 567788877776666654 788889999999999999999999999999999999999998877 8999999
Q ss_pred ccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHH---HHHHHHHhhhcC----CcEEEEEecC
Q 011578 284 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGI---EALEEIMSVMDG----GKVVVIFAGY 353 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~---~~~~~ll~~l~~----~~~~vi~~~~ 353 (482)
+.++++|+|++++.+++.|..|+ +||||+||||.....+.+..+...+ +.+-+|+.+|++ ++|-+|+||+
T Consensus 200 s~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatN 279 (388)
T KOG0651|consen 200 SALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATN 279 (388)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecC
Confidence 99999999999999999998875 4999999999999887655444444 445555556665 7899999976
Q ss_pred chhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 354 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
...+. +|+|++ |+|+.++.|.|+...|..|++.+-... .....++.+++.++.++
T Consensus 280 rpdtL-----dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i---------~~~Geid~eaivK~~d~--------- 336 (388)
T KOG0651|consen 280 RPDTL-----DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPI---------DFHGEIDDEAILKLVDG--------- 336 (388)
T ss_pred Ccccc-----chhhcCCccccceeccCCcchhhceeeEeeccccc---------cccccccHHHHHHHHhc---------
Confidence 65554 889887 999999999999999999988776544 34567788999988884
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
.||+++++.+.+|-..+ .+++...+..+||..+..++.
T Consensus 337 f~gad~rn~~tEag~Fa---------~~~~~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 337 FNGADLRNVCTEAGMFA---------IPEERDEVLHEDFMKLVRKQA 374 (388)
T ss_pred cChHHHhhhcccccccc---------cchhhHHHhHHHHHHHHHHHH
Confidence 56788888877775332 346667788899988877654
No 37
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.95 E-value=1.5e-27 Score=215.73 Aligned_cols=167 Identities=16% Similarity=0.170 Sum_probs=145.4
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCC--cHHHHHHHHcCCCCCCcccccCc-CCCC
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQN-MYGE 86 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~-~~g~ 86 (482)
.+...||||+|+..|+.+.|+.|+.. ++..+.. |.||||+|+..+ +.+++++|++ .|++++.++ ..|.
T Consensus 18 ~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~-g~TpLh~a~~~~~~~~eiv~~Ll~----~gadvn~~~~~~g~ 88 (209)
T PHA02859 18 FYRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDL-YETPIFSCLEKDKVNVEILKFLIE----NGADVNFKTRDNNL 88 (209)
T ss_pred hhccCcHHHHHHHhCcHHHHHHHHHh----hhccCcc-CCCHHHHHHHcCCCCHHHHHHHHH----CCCCCCccCCCCCC
Confidence 56789999999999999999999853 4556665 999999999854 8999999999 688999987 5899
Q ss_pred hHHHHHHHc---CCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhh
Q 011578 87 TPLHMAAKN---GCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 163 (482)
Q Consensus 87 tpLh~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a 163 (482)
||||+|+.. ++.+++++|+++|+++|.+|..|.||||+|+.. ..++.+++++|+++|++++.+|..|.||||.++
T Consensus 89 TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~--~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a 166 (209)
T PHA02859 89 SALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCN--FNVRINVIKLLIDSGVSFLNKDFDNNNILYSYI 166 (209)
T ss_pred CHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh--ccCCHHHHHHHHHcCCCcccccCCCCcHHHHHH
Confidence 999998864 479999999999999999999999999998721 246899999999999999999999999997677
Q ss_pred cCCCChHHHHHHHhhhHHHHHHhh
Q 011578 164 NGPGSAKLRELLLWHSEEQRKRRA 187 (482)
Q Consensus 164 ~~~~~~~~~~lL~~~~~~~~~~~~ 187 (482)
...++.+++++|+.+|++.+.+..
T Consensus 167 ~~~~~~~iv~~Ll~~Gadi~~~d~ 190 (209)
T PHA02859 167 LFHSDKKIFDFLTSLGIDINETNK 190 (209)
T ss_pred HhcCCHHHHHHHHHcCCCCCCCCC
Confidence 777889999999999988765543
No 38
>PHA02791 ankyrin-like protein; Provisional
Probab=99.94 E-value=4.1e-27 Score=220.69 Aligned_cols=143 Identities=20% Similarity=0.120 Sum_probs=122.0
Q ss_pred cCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHH
Q 011578 23 SGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAK 102 (482)
Q Consensus 23 ~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~ 102 (482)
.++.++++.|+.+ +. +..+.. |+||||+|+..|+.+++++|++ .+++++..+ |+||||+|+..|+.++++
T Consensus 9 ~~~~~~~~~Lis~-~a--~~~D~~-G~TpLh~Aa~~g~~eiv~~Ll~----~ga~~n~~d--~~TpLh~Aa~~g~~eiV~ 78 (284)
T PHA02791 9 WKSKQLKSFLSSK-DA--FKADVH-GHSALYYAIADNNVRLVCTLLN----AGALKNLLE--NEFPLHQAATLEDTKIVK 78 (284)
T ss_pred cCHHHHHHHHHhC-CC--CCCCCC-CCcHHHHHHHcCCHHHHHHHHH----CcCCCcCCC--CCCHHHHHHHCCCHHHHH
Confidence 4566777776654 44 445555 9999999999999999999999 466677654 789999999999999999
Q ss_pred HHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCC-ChhhhhhcCCCChHHHHHHHhhhH
Q 011578 103 LLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGK-TPLDHLSNGPGSAKLRELLLWHSE 180 (482)
Q Consensus 103 ~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~-tpl~~~a~~~~~~~~~~lL~~~~~ 180 (482)
+|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.++..|+ ||||+|+ ..++.+++++|+.++.
T Consensus 79 lLL~~Gadvn~~d~~G~TpLh~Aa----~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa-~~g~~eivk~LL~~~~ 152 (284)
T PHA02791 79 ILLFSGMDDSQFDDKGNTALYYAV----DSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV-MLNDVSIVSYFLSEIP 152 (284)
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHH-HcCCHHHHHHHHhcCC
Confidence 999999999999999999999999 88999999999999999999999986 8995554 5667788888887654
No 39
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.94 E-value=8.9e-27 Score=228.98 Aligned_cols=233 Identities=23% Similarity=0.313 Sum_probs=181.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..+++++|.+..++.+++.+. .+..++..+..++..++.+++|+||||||||++|+++|+.+.. +|+.+.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~---~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~-------~~~~v~ 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVE---LPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA-------TFIRVV 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHH---HHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC-------CEEecc
Confidence 457899999999999998743 4444555555566678899999999999999999999998765 788888
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
.+.+..+|+|++...++.+|+.+. ++||||||+|.+..++.... +....+.+..++..+++ +.++||+||
T Consensus 189 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~tt 268 (364)
T TIGR01242 189 GSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAAT 268 (364)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence 888889999999999999997764 48999999999987765332 22345667778777763 567788776
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+... .+ +|++++ ||+..|+|+.|+.++|.+|++.++.+. .+..+++.+.++..+.+
T Consensus 269 n~~~--~l---d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~---------~l~~~~~~~~la~~t~g-------- 326 (364)
T TIGR01242 269 NRPD--IL---DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM---------KLAEDVDLEAIAKMTEG-------- 326 (364)
T ss_pred CChh--hC---ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC---------CCCccCCHHHHHHHcCC--------
Confidence 5433 22 888876 999999999999999999999987654 23345666777766653
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
.+++++++++..|...+..+ ....|+.+||.+|+.++
T Consensus 327 -~sg~dl~~l~~~A~~~a~~~---------~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 327 -ASGADLKAICTEAGMFAIRE---------ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred -CCHHHHHHHHHHHHHHHHHh---------CCCccCHHHHHHHHHHh
Confidence 45889999999988876333 23579999999999886
No 40
>CHL00176 ftsH cell division protein; Validated
Probab=99.94 E-value=3.2e-26 Score=235.68 Aligned_cols=232 Identities=23% Similarity=0.347 Sum_probs=181.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|.+.+++.+.+.+..+..+..... ++...+.++||+||||||||++|+++|++++. +|+.++
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~----~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~-------p~i~is 248 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTA----VGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV-------PFFSIS 248 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhh----ccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------Ceeecc
Confidence 4789999999999999998777665554433 44567889999999999999999999998865 899999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
++++...++|.+...++++|..+. ++||||||+|.+...|+.+ .++....++++|+..|++ ..++||++|
T Consensus 249 ~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaT 328 (638)
T CHL00176 249 GSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAAT 328 (638)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEec
Confidence 999988899988888999998764 4899999999998876532 345566889999999975 457777775
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+.... + +|++++ |||..+.|+.|+.++|.+|++.++++.. +.++ ..+..++....
T Consensus 329 N~~~~--L---D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---------~~~d---~~l~~lA~~t~------ 385 (638)
T CHL00176 329 NRVDI--L---DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---------LSPD---VSLELIARRTP------ 385 (638)
T ss_pred CchHh--h---hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---------cchh---HHHHHHHhcCC------
Confidence 54332 2 788876 9999999999999999999999988632 2222 33444444332
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
..++++|++++.+|...+..+ ....|+.+||.+|+.++
T Consensus 386 G~sgaDL~~lvneAal~a~r~---------~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 386 GFSGADLANLLNEAAILTARR---------KKATITMKEIDTAIDRV 423 (638)
T ss_pred CCCHHHHHHHHHHHHHHHHHh---------CCCCcCHHHHHHHHHHH
Confidence 468999999999987765322 22469999999999886
No 41
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.94 E-value=3.4e-26 Score=213.51 Aligned_cols=184 Identities=16% Similarity=0.233 Sum_probs=140.1
Q ss_pred CCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcC--------CcE
Q 011578 238 VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE--------GGI 309 (482)
Q Consensus 238 ~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~--------~~v 309 (482)
.+..+|..++||||||||||++|+++|++++. +|+.++++++.++|+|+++++++++|+.|. +||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~-------~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcV 215 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGI-------EPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSC 215 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC-------CeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeE
Confidence 34568899999999999999999999999987 899999999999999999999999998763 699
Q ss_pred EEEecccccccCCCCCCChhHHHHH-HHHHhhhcC----------------CcEEEEEecCchhHHHHHhcCccccC--C
Q 011578 310 LFVDEAYRLIPMQKADDKDYGIEAL-EEIMSVMDG----------------GKVVVIFAGYSEPMKRVIASNEGFCR--R 370 (482)
Q Consensus 310 l~iDE~d~l~~~~~~~~~~~~~~~~-~~ll~~l~~----------------~~~~vi~~~~~~~~~~~~~~~~~l~~--R 370 (482)
|||||||.+++.+.+.+.....+++ .+|+..||+ ..++||+||+.. +.+ +|+|+| |
T Consensus 216 LFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrp--d~L---DpALlRpGR 290 (413)
T PLN00020 216 LFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDF--STL---YAPLIRDGR 290 (413)
T ss_pred EEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCc--ccC---CHhHcCCCC
Confidence 9999999999988755555545554 799988752 346777775433 333 999999 9
Q ss_pred CcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhh
Q 011578 371 VTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDL 450 (482)
Q Consensus 371 ~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 450 (482)
||..+ ..|+.++|.+|++.++++. +++...+..++..+.+.... .-|+.-..+.+.+++.+..
T Consensus 291 fDk~i--~lPd~e~R~eIL~~~~r~~-------------~l~~~dv~~Lv~~f~gq~~D--f~GAlrar~yd~~v~~~i~ 353 (413)
T PLN00020 291 MEKFY--WAPTREDRIGVVHGIFRDD-------------GVSREDVVKLVDTFPGQPLD--FFGALRARVYDDEVRKWIA 353 (413)
T ss_pred CCcee--CCCCHHHHHHHHHHHhccC-------------CCCHHHHHHHHHcCCCCCch--hhhHHHHHHHHHHHHHHHH
Confidence 99865 5899999999999998863 34567788888776433221 1222223444444444443
No 42
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.9e-26 Score=215.01 Aligned_cols=213 Identities=23% Similarity=0.303 Sum_probs=167.1
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
.+.+++++||+.+...-.-+...+ ......+++|||||||||||+|+.||+..+. .|..+
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v-------------~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~-------~f~~~ 79 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAV-------------EAGHLHSMILWGPPGTGKTTLARLIAGTTNA-------AFEAL 79 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHH-------------hcCCCceeEEECCCCCCHHHHHHHHHHhhCC-------ceEEe
Confidence 356889999998864322221222 2456789999999999999999999998877 78887
Q ss_pred ecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
++... +-+.++++|++| +..|||||||++|...+| +.||..|++|.+++|+|||.
T Consensus 80 sAv~~-------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ-----------D~lLp~vE~G~iilIGATTE 141 (436)
T COG2256 80 SAVTS-------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ-----------DALLPHVENGTIILIGATTE 141 (436)
T ss_pred ccccc-------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh-----------hhhhhhhcCCeEEEEeccCC
Confidence 76442 335678888776 248999999999999988 99999999999999999999
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccc-cccCcccHHHHHHHHHHHhhHhhccccC
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSCSMDAIAALIEKETTEKQRREMN 433 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (482)
||...+ +|+|++|. .+++|.+++.+++.+++++-+....+ ++ .....++++++..+.... .|+
T Consensus 142 NPsF~l---n~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~r-----gl~~~~~~i~~~a~~~l~~~s-------~GD 205 (436)
T COG2256 142 NPSFEL---NPALLSRA-RVFELKPLSSEDIKKLLKRALLDEER-----GLGGQIIVLDEEALDYLVRLS-------NGD 205 (436)
T ss_pred CCCeee---cHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhc-----CCCcccccCCHHHHHHHHHhc-------Cch
Confidence 998877 99999999 99999999999999999996555543 44 244557888888888865 578
Q ss_pred cchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 434 GGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
+|..-|.+|.+.... .+. ..++.+++++.+++-.+
T Consensus 206 ~R~aLN~LE~~~~~~---------~~~--~~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 206 ARRALNLLELAALSA---------EPD--EVLILELLEEILQRRSA 240 (436)
T ss_pred HHHHHHHHHHHHHhc---------CCC--cccCHHHHHHHHhhhhh
Confidence 888899999887764 111 14457788877776554
No 43
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.9e-26 Score=237.39 Aligned_cols=252 Identities=23% Similarity=0.254 Sum_probs=204.0
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++++|++.++.++++. +..+..+++.+..+...+|.++||+||||||||++|+++|..+.. ......|+.-
T Consensus 261 ~v~fd~vggl~~~i~~LKEm---Vl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~--~~~kisffmr 335 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEM---VLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSR--GNRKISFFMR 335 (1080)
T ss_pred ccCccccccHHHHHHHHHHH---HHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcc--cccccchhhh
Confidence 35689999999999999987 777888888889899999999999999999999999999998843 2223467777
Q ss_pred ecccccccccccchhhHHHHHHhcCC---cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecCc
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYS 354 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a~~---~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~ 354 (482)
.+++..++|+|+.+..++-+|++|+. +|+|+||||.|+|.|++-.......++.+||..|++ |.|+||+||+.
T Consensus 336 kgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 336 KGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred cCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 88899999999999999999998865 999999999999998755555566888999999987 88999999765
Q ss_pred hhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcccc
Q 011578 355 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 432 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 432 (482)
.+.. +|++++ |||+.+.||.|+.++|.+|+..+-.+.. +.+....+..++.... .+
T Consensus 416 pda~-----dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~-----------~~i~~~l~~~la~~t~------gy 473 (1080)
T KOG0732|consen 416 PDAI-----DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE-----------PPISRELLLWLAEETS------GY 473 (1080)
T ss_pred cccc-----chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC-----------CCCCHHHHHHHHHhcc------cc
Confidence 5443 899976 9999999999999999999999877653 4556666666666554 56
Q ss_pred CcchhHHHHHHHHHHhhhhhcC------CC-CChhhhhcccHHHHHHHHHHHHhc
Q 011578 433 NGGLVDPMLVNARENLDLRLSF------DC-LDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 433 ~~~~l~~~~~~a~~~~~~r~~~------~~-~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
.|++|+.++.+|......|-.- +. ........+...||..|+.++.|.
T Consensus 474 ~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps 528 (1080)
T KOG0732|consen 474 GGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPS 528 (1080)
T ss_pred chHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCC
Confidence 6888999999998887666321 11 111123348999999999988763
No 44
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.94 E-value=3.4e-26 Score=230.27 Aligned_cols=171 Identities=22% Similarity=0.226 Sum_probs=128.6
Q ss_pred ccccccCC-CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCccc-cc
Q 011578 3 KNQDRRSR-SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL-EA 80 (482)
Q Consensus 3 ~~~~~~~~-~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-~~ 80 (482)
.|.+.... ..|.||||+|+..|+.+.++.|+.. +.+++..+.. +.||||+|+..|+.+++++|+++ +..+ +.
T Consensus 24 ~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~-~~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~ 97 (413)
T PHA02875 24 IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKH-GAIPDVKYPD-IESELHDAVEEGDVKAVEELLDL----GKFADDV 97 (413)
T ss_pred CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccCCC-cccHHHHHHHCCCHHHHHHHHHc----CCccccc
Confidence 45444443 3788889988888888888888754 5556666554 78888888888888888888874 3322 34
Q ss_pred CcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhh
Q 011578 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160 (482)
Q Consensus 81 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~ 160 (482)
.+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||
T Consensus 98 ~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~----~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~ 173 (413)
T PHA02875 98 FYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAV----MMGDIKGIELLIDHKACLDIEDCCGCTPLI 173 (413)
T ss_pred ccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 4566888888888888888888888888888888888888888888 777888888888888888888888888884
Q ss_pred hhhcCCCChHHHHHHHhhhHHHHH
Q 011578 161 HLSNGPGSAKLRELLLWHSEEQRK 184 (482)
Q Consensus 161 ~~a~~~~~~~~~~lL~~~~~~~~~ 184 (482)
+|+ ..++.+++++|+++|++++.
T Consensus 174 ~A~-~~g~~eiv~~Ll~~ga~~n~ 196 (413)
T PHA02875 174 IAM-AKGDIAICKMLLDSGANIDY 196 (413)
T ss_pred HHH-HcCCHHHHHHHHhCCCCCCc
Confidence 444 45667777888887777654
No 45
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.94 E-value=3e-26 Score=234.53 Aligned_cols=171 Identities=23% Similarity=0.286 Sum_probs=148.6
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCC-----------------
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPG----------------- 72 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~----------------- 72 (482)
+..+.||||+||..|+.+.|+.|+. .+.++|..+.. |+||||+||..|+.+++++|++.+.
T Consensus 34 ~~~~~tPLh~A~~~g~~e~vk~Ll~-~gadvn~~d~~-g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~ 111 (477)
T PHA02878 34 SLIPFIPLHQAVEARNLDVVKSLLT-RGHNVNQPDHR-DLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNN 111 (477)
T ss_pred cccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCC-CCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHc
Confidence 4467899999999999999999995 57789998886 9999999998876655444443210
Q ss_pred -------------------------------------------CCCcccccCcCC-CChHHHHHHHcCCHHHHHHHHhCC
Q 011578 73 -------------------------------------------NDKVELEAQNMY-GETPLHMAAKNGCNEAAKLLLAHG 108 (482)
Q Consensus 73 -------------------------------------------~~~~~~~~~~~~-g~tpLh~A~~~g~~~~v~~Ll~~g 108 (482)
..|++++.++.. |.||||+|+..|+.+++++|+++|
T Consensus 112 ~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~g 191 (477)
T PHA02878 112 RNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYG 191 (477)
T ss_pred CCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCC
Confidence 046778888888 999999999999999999999999
Q ss_pred CCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 109 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 109 a~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
++++.+|..|+||||+|+ ..++.+++++|+++|++++.+|..|+||||+|+...+..+++++|+++|++.+.+.
T Consensus 192 ad~n~~d~~g~tpLh~A~----~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~ 265 (477)
T PHA02878 192 ANVNIPDKTNNSPLHHAV----KHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS 265 (477)
T ss_pred CCCCCcCCCCCCHHHHHH----HhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccC
Confidence 999999999999999999 88999999999999999999999999999887776678899999999998876543
No 46
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.93 E-value=2.4e-26 Score=224.52 Aligned_cols=163 Identities=30% Similarity=0.359 Sum_probs=146.1
Q ss_pred chHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCc-CCCChHHHHH
Q 011578 14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMA 92 (482)
Q Consensus 14 ~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~tpLh~A 92 (482)
..-++.|++.|+++.|+.+++..+..++..|.. |.|+|||||.+++.+++++|++ .++++|..+ ..+.||||||
T Consensus 45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~-g~tlLHWAAiNNrl~v~r~li~----~gadvn~~gG~l~stPLHWA 119 (600)
T KOG0509|consen 45 LDDIVKATQYGELETVKELVESEGESVNNPDRE-GVTLLHWAAINNRLDVARYLIS----HGADVNAIGGVLGSTPLHWA 119 (600)
T ss_pred hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcC-CccceeHHHHcCcHHHHHHHHH----cCCCccccCCCCCCCcchHH
Confidence 456889999999999999998768889999986 9999999999999999999999 588899888 7789999999
Q ss_pred HHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHH
Q 011578 93 AKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 172 (482)
Q Consensus 93 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~ 172 (482)
|++|++.+|.+|+++|||++.+|.+|.||||.|+ ..++.-+|-+||.+|+|++.+|.+|+||||+||.++.... +
T Consensus 120 ar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~----~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~-v 194 (600)
T KOG0509|consen 120 ARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAA----QFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALF-V 194 (600)
T ss_pred HHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHH----HhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHH-H
Confidence 9999999999999999999999999999999999 8889999999999999999999999999977777665555 6
Q ss_pred HHHHhhhHHHHHHh
Q 011578 173 ELLLWHSEEQRKRR 186 (482)
Q Consensus 173 ~lL~~~~~~~~~~~ 186 (482)
..|+..++....++
T Consensus 195 ~~LL~f~a~~~~~d 208 (600)
T KOG0509|consen 195 RRLLKFGASLLLTD 208 (600)
T ss_pred HHHHHhcccccccc
Confidence 66666666554443
No 47
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9.3e-26 Score=222.02 Aligned_cols=228 Identities=24% Similarity=0.320 Sum_probs=180.9
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
.++.|.......+++. +.++.+.+......+..+|.++|+|||||||||.+++++|++.+. .++.+++++
T Consensus 184 ~~~gg~~~~~~~i~e~---v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a-------~~~~i~~pe 253 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIREL---VELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA-------FLFLINGPE 253 (693)
T ss_pred cccchhHHHHHHHHHH---HHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc-------eeEecccHH
Confidence 3566666666666665 778888888888889999999999999999999999999999986 889999999
Q ss_pred ccccccccchhhHHHHHHhcC----CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecCchhH
Q 011578 286 LVGEFVGHTGPKTRRRIKEAE----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSEPM 357 (482)
Q Consensus 286 ~~~~~~g~~~~~~~~~~~~a~----~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~~~~ 357 (482)
+.+++.|+++++++++|+++. +++|||||+|.+.++|..... ..+++..+|++.|++ ++++|+.++++...
T Consensus 254 li~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~s 332 (693)
T KOG0730|consen 254 LISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDS 332 (693)
T ss_pred HHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccc
Confidence 999999999999999998873 589999999999998875444 678999999999986 56777777554333
Q ss_pred HHHHhcCccccC-CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcch
Q 011578 358 KRVIASNEGFCR-RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL 436 (482)
Q Consensus 358 ~~~~~~~~~l~~-R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 436 (482)
. +|+++| |||..+.+..|+..+|.+|++.+.+++. ...+.+...++..+.++. |++
T Consensus 333 l-----d~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~---------~~~~~~l~~iA~~thGyv---------GaD 389 (693)
T KOG0730|consen 333 L-----DPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMN---------LLSDVDLEDIAVSTHGYV---------GAD 389 (693)
T ss_pred c-----ChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcC---------CcchhhHHHHHHHccchh---------HHH
Confidence 2 899996 9999999999999999999999998764 334456677777777666 566
Q ss_pred hHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHhcC
Q 011578 437 VDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 437 l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~~~ 481 (482)
+..++..|...+..| +++||..|+..++|.+
T Consensus 390 L~~l~~ea~~~~~r~--------------~~~~~~~A~~~i~psa 420 (693)
T KOG0730|consen 390 LAALCREASLQATRR--------------TLEIFQEALMGIRPSA 420 (693)
T ss_pred HHHHHHHHHHHHhhh--------------hHHHHHHHHhcCCchh
Confidence 666666666655333 4555555555555544
No 48
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.93 E-value=8.7e-26 Score=227.31 Aligned_cols=163 Identities=23% Similarity=0.293 Sum_probs=101.1
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh 90 (482)
..+.||||.|+..|+.+.|+.|+..+....+..+.. |+||||+|+..|+.+++++|++ .|++++.++..|.||||
T Consensus 66 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g~tpL~~A~~~~~~~iv~~Ll~----~gad~~~~~~~g~tpLh 140 (413)
T PHA02875 66 PDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKD-GMTPLHLATILKKLDIMKLLIA----RGADPDIPNTDKFSPLH 140 (413)
T ss_pred CCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCC-CCCHHHHHHHhCCHHHHHHHHh----CCCCCCCCCCCCCCHHH
Confidence 455666666666666666666665443333333333 6666666666666666666666 35566666666666666
Q ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCC-ChhhhhhcCCCCh
Q 011578 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGK-TPLDHLSNGPGSA 169 (482)
Q Consensus 91 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~-tpl~~~a~~~~~~ 169 (482)
+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++..+..|. ||+ +.|...++.
T Consensus 141 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~----~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l-~~A~~~~~~ 215 (413)
T PHA02875 141 LAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAM----AKGDIAICKMLLDSGANIDYFGKNGCVAAL-CYAIENNKI 215 (413)
T ss_pred HHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHhCCCCCCcCCCCCCchHH-HHHHHcCCH
Confidence 666666666666666666666666666666666666 55666666666666666666666654 344 434445566
Q ss_pred HHHHHHHhhhHHHH
Q 011578 170 KLRELLLWHSEEQR 183 (482)
Q Consensus 170 ~~~~lL~~~~~~~~ 183 (482)
+++++|+++|++.+
T Consensus 216 ~iv~~Ll~~gad~n 229 (413)
T PHA02875 216 DIVRLFIKRGADCN 229 (413)
T ss_pred HHHHHHHHCCcCcc
Confidence 66666666666554
No 49
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.93 E-value=1.8e-25 Score=202.27 Aligned_cols=149 Identities=19% Similarity=0.198 Sum_probs=130.7
Q ss_pred cCCCCCchHhHHHHHcC--CHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhC---CcHHHHHHHHcCCCCCCcccccCc
Q 011578 8 RSRSAKPATIHGCAQSG--DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQN 82 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g--~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~ 82 (482)
..+..|.||||.|+..+ +.++++.|| +.+.++|..+...|+||||+|+.. ++.+++++|++ .|+++|.+|
T Consensus 46 ~~~~~g~TpLh~a~~~~~~~~eiv~~Ll-~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~----~gadin~~d 120 (209)
T PHA02859 46 DCNDLYETPIFSCLEKDKVNVEILKFLI-ENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILID----SGSSITEED 120 (209)
T ss_pred ccCccCCCHHHHHHHcCCCCHHHHHHHH-HCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHH----CCCCCCCcC
Confidence 35678999999999854 899999888 557788888754499999998864 47999999999 688999999
Q ss_pred CCCChHHHHHHH--cCCHHHHHHHHhCCCCccccccCCCcceee-ehhhccCCChHHHHHHHhhCCCCccccCCCCCChh
Q 011578 83 MYGETPLHMAAK--NGCNEAAKLLLAHGAFIEAKANNGMTPLHL-SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159 (482)
Q Consensus 83 ~~g~tpLh~A~~--~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~-A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl 159 (482)
..|.||||+|+. .++.+++++|+++|++++.+|.+|+||||. |+ ..++.+++++|+++|++++.+|..|+|||
T Consensus 121 ~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~----~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl 196 (209)
T PHA02859 121 EDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYIL----FHSDKKIFDFLTSLGIDINETNKSGYNCY 196 (209)
T ss_pred CCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHH----hcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 999999999876 468999999999999999999999999996 45 56789999999999999999999999999
Q ss_pred hhhhcC
Q 011578 160 DHLSNG 165 (482)
Q Consensus 160 ~~~a~~ 165 (482)
|+|+.+
T Consensus 197 ~la~~~ 202 (209)
T PHA02859 197 DLIKFR 202 (209)
T ss_pred HHHhhh
Confidence 766543
No 50
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.93 E-value=1.3e-25 Score=227.25 Aligned_cols=171 Identities=24% Similarity=0.341 Sum_probs=153.5
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCC--------------
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN-------------- 73 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~-------------- 73 (482)
.....+.||||.|+..|+.+.|+.|+ +.|.++|..+.. |.||||+|+..|+.+++++|+++|++
T Consensus 30 ~~~~~~~tpL~~A~~~g~~~iv~~Ll-~~Ga~~n~~~~~-~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i 107 (434)
T PHA02874 30 ISVDETTTPLIDAIRSGDAKIVELFI-KHGADINHINTK-IPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMI 107 (434)
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHH
Confidence 44567899999999999999999988 457778888876 99999999999999999999997653
Q ss_pred -----CCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCc
Q 011578 74 -----DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADC 148 (482)
Q Consensus 74 -----~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~ 148 (482)
.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+ ..++.+++++|+++|+++
T Consensus 108 ~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~----~~~~~~iv~~Ll~~g~~~ 183 (434)
T PHA02874 108 KTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAI----KHNFFDIIKLLLEKGAYA 183 (434)
T ss_pred HHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHH----HCCcHHHHHHHHHCCCCC
Confidence 35678889999999999999999999999999999999999999999999999 889999999999999999
Q ss_pred cccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHH
Q 011578 149 SAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 149 ~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
+..|..|+||||+| +..++.+++++|+++|++...+
T Consensus 184 n~~~~~g~tpL~~A-~~~g~~~iv~~Ll~~g~~i~~~ 219 (434)
T PHA02874 184 NVKDNNGESPLHNA-AEYGDYACIKLLIDHGNHIMNK 219 (434)
T ss_pred CCCCCCCCCHHHHH-HHcCCHHHHHHHHhCCCCCcCC
Confidence 99999999999554 5567889999999998875544
No 51
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.93 E-value=2e-25 Score=209.15 Aligned_cols=163 Identities=26% Similarity=0.312 Sum_probs=135.3
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCC-------CCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCc
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERN-------PVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN 82 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~-------~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 82 (482)
...|.|||..||++|+.++|++||++.+..+.... ...|-+||-.|+..||+++|+.|++ .++++|...
T Consensus 39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~----~ga~VN~tT 114 (615)
T KOG0508|consen 39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLR----RGASVNDTT 114 (615)
T ss_pred ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHH----hcCcccccc
Confidence 45677999999999999999999886655543221 1137788888888899999999998 467888887
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhh
Q 011578 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL 162 (482)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~ 162 (482)
.-..|||-.||.-|+.++|++|+++|+|++..|++|+|.||+|| .+||.+++++|++.|+|+|.++..|+|+| |-
T Consensus 115 ~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~----ykGh~~I~qyLle~gADvn~ks~kGNTAL-H~ 189 (615)
T KOG0508|consen 115 RTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIAC----YKGHVDIAQYLLEQGADVNAKSYKGNTAL-HD 189 (615)
T ss_pred ccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeee----ccCchHHHHHHHHhCCCcchhcccCchHH-Hh
Confidence 77789999999999999999999999999999999999999999 88899999999999999999999999999 66
Q ss_pred hcCCCChHHHHHHHhhhHH
Q 011578 163 SNGPGSAKLRELLLWHSEE 181 (482)
Q Consensus 163 a~~~~~~~~~~lL~~~~~~ 181 (482)
|+..|+.+++++|+.+|+.
T Consensus 190 caEsG~vdivq~Ll~~ga~ 208 (615)
T KOG0508|consen 190 CAESGSVDIVQLLLKHGAK 208 (615)
T ss_pred hhhcccHHHHHHHHhCCce
Confidence 6667888888888887654
No 52
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.93 E-value=3.4e-25 Score=226.73 Aligned_cols=156 Identities=28% Similarity=0.348 Sum_probs=140.1
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHH
Q 011578 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A 92 (482)
|.||||+||..|+.+.++.|+. .+.+++..+.. |+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|
T Consensus 168 g~tpLh~A~~~~~~~iv~~Ll~-~gad~n~~d~~-g~tpLh~A~~~~~~~iv~~Ll~----~ga~in~~d~~g~TpLh~A 241 (477)
T PHA02878 168 GNTALHYATENKDQRLTELLLS-YGANVNIPDKT-NNSPLHHAVKHYNKPIVHILLE----NGASTDARDKCGNTPLHIS 241 (477)
T ss_pred CCCHHHHHHhCCCHHHHHHHHH-CCCCCCCcCCC-CCCHHHHHHHhCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHH
Confidence 9999999999999999999885 57788888876 9999999999999999999999 6889999999999999999
Q ss_pred HHc-CCHHHHHHHHhCCCCcccccc-CCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChH
Q 011578 93 AKN-GCNEAAKLLLAHGAFIEAKAN-NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAK 170 (482)
Q Consensus 93 ~~~-g~~~~v~~Ll~~ga~~~~~d~-~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~ 170 (482)
+.. ++.+++++|+++|++++.++. .|+||||+|+ ++.+++++|+++|+|+|.+|..|+||||+|+......+
T Consensus 242 ~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~------~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~ 315 (477)
T PHA02878 242 VGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSI------KSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCIN 315 (477)
T ss_pred HHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHc------cCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccc
Confidence 975 789999999999999999886 7999999996 36789999999999999999999999988776655666
Q ss_pred HHHHHHhhhH
Q 011578 171 LRELLLWHSE 180 (482)
Q Consensus 171 ~~~lL~~~~~ 180 (482)
+.++|.....
T Consensus 316 ~~~~li~~~~ 325 (477)
T PHA02878 316 IGRILISNIC 325 (477)
T ss_pred hHHHHHHHHH
Confidence 7777776543
No 53
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=5.5e-25 Score=234.61 Aligned_cols=246 Identities=21% Similarity=0.318 Sum_probs=191.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|.+..++.+++++. .+..+++....++..++.++||+||||||||++|+++|++++. +++.++
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~-------~~i~i~ 244 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVE---LPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA-------YFISIN 244 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC-------eEEEEe
Confidence 468899999999999998854 4445555555566678889999999999999999999998865 789999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecCch
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE 355 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~~ 355 (482)
++++.+++.|+++..++.+|+.+. ++||||||+|.+.++++...++...+++++|++.|++ +.++||++|+..
T Consensus 245 ~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~ 324 (733)
T TIGR01243 245 GPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRP 324 (733)
T ss_pred cHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCCh
Confidence 999999999999999999998764 4899999999999988765566667888999999874 567777775543
Q ss_pred hHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccC
Q 011578 356 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 433 (482)
Q Consensus 356 ~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (482)
..+ +|++++ ||+..+.|+.|+.++|.+|++.+.... .+..+.+.+.++..+.++ .
T Consensus 325 --~~l---d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~---------~l~~d~~l~~la~~t~G~---------~ 381 (733)
T TIGR01243 325 --DAL---DPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM---------PLAEDVDLDKLAEVTHGF---------V 381 (733)
T ss_pred --hhc---CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC---------CCccccCHHHHHHhCCCC---------C
Confidence 223 888876 999999999999999999999876643 333455556666665544 4
Q ss_pred cchhHHHHHHHHHHhhhhhcC-CCC-------Ch--hhhhcccHHHHHHHHHHHHhcC
Q 011578 434 GGLVDPMLVNARENLDLRLSF-DCL-------DT--DELRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~~~r~~~-~~~-------~~--~~~~~i~~~d~~~al~~~~~~~ 481 (482)
++++..++..|...+..|... ... .. .....++.+||..|++.++|..
T Consensus 382 gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 382 GADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccc
Confidence 677888888888777666532 111 00 1234689999999999998864
No 54
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.93 E-value=1.4e-25 Score=232.51 Aligned_cols=174 Identities=21% Similarity=0.199 Sum_probs=148.1
Q ss_pred CCCCchHhHHHHH--cCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCc--HHHHHHHHcCCCCCCcccccCcCCC
Q 011578 10 RSAKPATIHGCAQ--SGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK--AEIVKSLLEWPGNDKVELEAQNMYG 85 (482)
Q Consensus 10 ~~~~~t~l~~a~~--~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~~~~g 85 (482)
+..|.||||.|+. .++.+.++.|+ +.|.++|..+.. |+||||+|+..|+ .++|++|++ .|+++|.+|..|
T Consensus 174 d~~G~TpLH~A~~n~~~~~eIVklLL-e~GADVN~kD~~-G~TPLH~Aa~~g~~~~eIVklLLe----~GADVN~kD~~G 247 (764)
T PHA02716 174 KKTGYGILHAYLGNMYVDIDILEWLC-NNGVNVNLQNNH-LITPLHTYLITGNVCASVIKKIIE----LGGDMDMKCVNG 247 (764)
T ss_pred CCCCCcHHHHHHHhccCCHHHHHHHH-HcCCCCCCCCCC-CCCHHHHHHHcCCCCHHHHHHHHH----cCCCCCCCCCCC
Confidence 5679999999864 46789999888 557889999886 9999999999995 599999999 688999999999
Q ss_pred ChHHHHH-------------------------------------HHcCCHHHHHHHHhCCCCccccccCCCcceeeehhh
Q 011578 86 ETPLHMA-------------------------------------AKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWY 128 (482)
Q Consensus 86 ~tpLh~A-------------------------------------~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~ 128 (482)
+||||+| +..|+.+++++|+++|++++.+|.+|+||||+|+..
T Consensus 248 ~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~ 327 (764)
T PHA02716 248 MSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILR 327 (764)
T ss_pred CCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHH
Confidence 9999975 445788999999999999999999999999997622
Q ss_pred ccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhc-------------CCCChHHHHHHHhhhHHHHHHhhHhhh
Q 011578 129 SIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN-------------GPGSAKLRELLLWHSEEQRKRRALEAC 191 (482)
Q Consensus 129 ~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~-------------~~~~~~~~~lL~~~~~~~~~~~~~~~~ 191 (482)
..++.+++++|+++|++++.+|..|+||||+++. ..++.+++++|+++|++++.+.....+
T Consensus 328 --~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~T 401 (764)
T PHA02716 328 --HNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYT 401 (764)
T ss_pred --hCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCC
Confidence 2457899999999999999999999999976643 236789999999999988766544333
No 55
>PHA02946 ankyin-like protein; Provisional
Probab=99.92 E-value=3.5e-25 Score=222.58 Aligned_cols=170 Identities=18% Similarity=0.210 Sum_probs=137.9
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCc--HHHHHHHHcCCCCCCccccc-CcC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK--AEIVKSLLEWPGNDKVELEA-QNM 83 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~--~~~v~~Ll~~~~~~~~~~~~-~~~ 83 (482)
...+..|.||||+||..|+.++|+.||. .+.++|.++.. |+||||+|+..++ .+++++|++ .|++++. .|.
T Consensus 66 n~~d~~G~TpLh~Aa~~g~~eiv~lLL~-~GAdin~~d~~-g~TpLh~A~~~~~~~~e~v~lLl~----~Gadin~~~d~ 139 (446)
T PHA02946 66 NETDDDGNYPLHIASKINNNRIVAMLLT-HGADPNACDKQ-HKTPLYYLSGTDDEVIERINLLVQ----YGAKINNSVDE 139 (446)
T ss_pred CccCCCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCCCCC-CCCHHHHHHHcCCchHHHHHHHHH----cCCCcccccCC
Confidence 3456779999999999999999998885 57888888876 9999999987664 789999998 5677774 688
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhh
Q 011578 84 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 163 (482)
Q Consensus 84 ~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a 163 (482)
.|.|||| ||..|+.+++++|++.|++++.+|..|+||||+|+.. ..++.+++++|+++|++++.+|.+|+||||+|+
T Consensus 140 ~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~--~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa 216 (446)
T PHA02946 140 EGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMS--DNPKASTISWMMKLGISPSKPDHDGNTPLHIVC 216 (446)
T ss_pred CCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHh--cCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 8999997 6667889999999999999999999999999988732 345578899999999999999999999997777
Q ss_pred cCC-CChHHHHHHHhhhHHHHHHh
Q 011578 164 NGP-GSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 164 ~~~-~~~~~~~lL~~~~~~~~~~~ 186 (482)
..+ +..+++++|.. +++.+.+.
T Consensus 217 ~~~~~~~~iv~lLl~-gadin~~d 239 (446)
T PHA02946 217 SKTVKNVDIINLLLP-STDVNKQN 239 (446)
T ss_pred HcCCCcHHHHHHHHc-CCCCCCCC
Confidence 654 46677777775 66655444
No 56
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.92 E-value=3.9e-25 Score=223.67 Aligned_cols=167 Identities=29% Similarity=0.449 Sum_probs=149.2
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+|+..|+.+.|+.|+. .+.+++..+.. |.||||+|+..|+.+++++|++ .|++++..|..|.|
T Consensus 119 ~~~~~g~T~Lh~A~~~~~~~~v~~Ll~-~gad~n~~d~~-g~tpLh~A~~~~~~~iv~~Ll~----~g~~~n~~~~~g~t 192 (434)
T PHA02874 119 IKDAELKTFLHYAIKKGDLESIKMLFE-YGADVNIEDDN-GCYPIHIAIKHNFFDIIKLLLE----KGAYANVKDNNGES 192 (434)
T ss_pred CCCCCCccHHHHHHHCCCHHHHHHHHh-CCCCCCCcCCC-CCCHHHHHHHCCcHHHHHHHHH----CCCCCCCCCCCCCC
Confidence 345679999999999999999999885 57778888876 9999999999999999999999 57888999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.+++++|+++|++++.++..|+||||+|+ ..+. +.+.+|+ .|++++.+|..|+||||+|+..++
T Consensus 193 pL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~----~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~ 266 (434)
T PHA02874 193 PLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI----IHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPC 266 (434)
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHH----HCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCC
Confidence 999999999999999999999999999999999999999 5443 5667766 689999999999999988887777
Q ss_pred ChHHHHHHHhhhHHHHHHh
Q 011578 168 SAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 168 ~~~~~~lL~~~~~~~~~~~ 186 (482)
..+++++|+.+|++.+.+.
T Consensus 267 ~~~iv~~Ll~~gad~n~~d 285 (434)
T PHA02874 267 DIDIIDILLYHKADISIKD 285 (434)
T ss_pred cHHHHHHHHHCcCCCCCCC
Confidence 8899999999998876554
No 57
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.92 E-value=1.3e-24 Score=226.55 Aligned_cols=237 Identities=20% Similarity=0.296 Sum_probs=185.6
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeE
Q 011578 200 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 279 (482)
Q Consensus 200 ~~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 279 (482)
.....|+++.|.+..++++.+.......+...... +...+.+++|+||||||||++|++++++++. +|+
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~----~~~~~~gill~G~~G~GKt~~~~~~a~~~~~-------~f~ 214 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKL----GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-------PFF 214 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhc----CCCCCCcEEEECCCCCCHHHHHHHHHHHcCC-------CEE
Confidence 45567889999999999999987765544443332 3345678999999999999999999998876 899
Q ss_pred EeecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcC----CcEEEE
Q 011578 280 EVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVI 349 (482)
Q Consensus 280 ~~~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~----~~~~vi 349 (482)
.++++++...++|.+...++++|..+. ++||||||+|.+...++.+ ++....+++++||..||+ ..+++|
T Consensus 215 ~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivI 294 (644)
T PRK10733 215 TISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI 294 (644)
T ss_pred EEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEE
Confidence 999999999999999999999998764 5899999999999877642 344566889999999985 346777
Q ss_pred EecCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHh
Q 011578 350 FAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEK 427 (482)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 427 (482)
+||+... .+ +|++++ |||+.|.|+.|+.++|.+|++.++++.. +..+++...++..+.
T Consensus 295 aaTN~p~--~l---D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~---------l~~~~d~~~la~~t~------ 354 (644)
T PRK10733 295 AATNRPD--VL---DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP---------LAPDIDAAIIARGTP------ 354 (644)
T ss_pred EecCChh--hc---CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCC---------CCCcCCHHHHHhhCC------
Confidence 7755433 23 888886 9999999999999999999999998653 344555555444443
Q ss_pred hccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 428 QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 428 ~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
..+++++.+++.+|...+..+ ....|+.+||++|+.++.+
T Consensus 355 ---G~sgadl~~l~~eAa~~a~r~---------~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 355 ---GFSGADLANLVNEAALFAARG---------NKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHc---------CCCcccHHHHHHHHHHHhc
Confidence 556899999999998876322 3357999999999987743
No 58
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.92 E-value=7.3e-25 Score=205.45 Aligned_cols=156 Identities=31% Similarity=0.372 Sum_probs=143.3
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHH
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpL 89 (482)
.-.|.+||..|+..||+++|+.|+..+ .++|..... ..|||-.||..|++++|++|++ .++|++..|..|.|.|
T Consensus 81 ~IegappLWaAsaAGHl~vVk~L~~~g-a~VN~tT~T-NStPLraACfDG~leivKyLvE----~gad~~IanrhGhTcL 154 (615)
T KOG0508|consen 81 TIEGAPPLWAASAAGHLEVVKLLLRRG-ASVNDTTRT-NSTPLRAACFDGHLEIVKYLVE----HGADPEIANRHGHTCL 154 (615)
T ss_pred ccCCCchhhHHhccCcHHHHHHHHHhc-Ccccccccc-CCccHHHHHhcchhHHHHHHHH----cCCCCcccccCCCeeE
Confidence 456889999999999999999988664 888887764 6799999999999999999999 6889999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCCh
Q 011578 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 169 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~ 169 (482)
|+||..|+.+++++|++.|+|+|.++..|+|+||.++ ..|+.+++++|+++|+.+. +|..|.||| .+|+..++.
T Consensus 155 mIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~ca----EsG~vdivq~Ll~~ga~i~-~d~~GmtPL-~~Aa~tG~~ 228 (615)
T KOG0508|consen 155 MIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCA----ESGSVDIVQLLLKHGAKID-VDGHGMTPL-LLAAVTGHT 228 (615)
T ss_pred EeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhh----hcccHHHHHHHHhCCceee-ecCCCCchH-HHHhhhcch
Confidence 9999999999999999999999999999999999999 8999999999999999887 566799999 778778888
Q ss_pred HHHHHHHh
Q 011578 170 KLRELLLW 177 (482)
Q Consensus 170 ~~~~lL~~ 177 (482)
.++++|..
T Consensus 229 ~iVe~L~~ 236 (615)
T KOG0508|consen 229 DIVERLLQ 236 (615)
T ss_pred HHHHHHhc
Confidence 88888886
No 59
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.92 E-value=1.7e-24 Score=222.56 Aligned_cols=173 Identities=27% Similarity=0.329 Sum_probs=147.3
Q ss_pred cccc-ccCCCCCchHhHHHH--HcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCC--cHHHHHHHHcCCCCCCcc
Q 011578 3 KNQD-RRSRSAKPATIHGCA--QSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVE 77 (482)
Q Consensus 3 ~~~~-~~~~~~~~t~l~~a~--~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~ 77 (482)
.|.+ ...+..|.||||+|+ ..|+.+.++.|+. .+.+++..+.. |.||||+|+..| +.+++++|++ .|++
T Consensus 95 ~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~~iv~~Ll~----~g~d 168 (480)
T PHA03100 95 YGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLD-NGANVNIKNSD-GENLLHLYLESNKIDLKILKLLID----KGVD 168 (480)
T ss_pred CCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHH-cCCCCCccCCC-CCcHHHHHHHcCCChHHHHHHHHH----CCCC
Confidence 3444 344566899999999 9999999998884 56778888776 999999999999 9999999999 5788
Q ss_pred cccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCC------CcceeeehhhccCCCh--HHHHHHHhhCCCCcc
Q 011578 78 LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNG------MTPLHLSVWYSIRSED--YATVKTLLEYNADCS 149 (482)
Q Consensus 78 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g------~tpLh~A~~~~~~~~~--~~~v~~Ll~~gad~~ 149 (482)
++.+|..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+ ..++ .+++++|+++|++++
T Consensus 169 in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~----~~~~~~~~iv~~Ll~~g~din 244 (480)
T PHA03100 169 INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAA----CYNEITLEVVNYLLSYGVPIN 244 (480)
T ss_pred cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHH----HhCcCcHHHHHHHHHcCCCCC
Confidence 88899999999999999999999999999999999988888 89999999 7777 999999999999999
Q ss_pred ccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 150 AKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 150 ~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
.+|..|.||||+|+ ..++.+++++|++.|++++.+.
T Consensus 245 ~~d~~g~TpL~~A~-~~~~~~iv~~Ll~~gad~n~~d 280 (480)
T PHA03100 245 IKDVYGFTPLHYAV-YNNNPEFVKYLLDLGANPNLVN 280 (480)
T ss_pred CCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCCCccC
Confidence 99999999995554 4567888889998888766554
No 60
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.92 E-value=1.9e-24 Score=224.07 Aligned_cols=174 Identities=19% Similarity=0.179 Sum_probs=144.8
Q ss_pred cccc-ccCCCCCchHhHHHHHcCC--HHHHHHHHhhCCCCccCCCCCCCChHHHHH------------------------
Q 011578 3 KNQD-RRSRSAKPATIHGCAQSGD--LLAFQRLLRENPSLLNERNPVMAQTPLHVS------------------------ 55 (482)
Q Consensus 3 ~~~~-~~~~~~~~t~l~~a~~~g~--~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A------------------------ 55 (482)
.|.+ ..++..|.||||+|+..|+ .+.|+.|| +.|+++|..+.. |+||||+|
T Consensus 201 ~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLL-e~GADVN~kD~~-G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~ 278 (764)
T PHA02716 201 NGVNVNLQNNHLITPLHTYLITGNVCASVIKKII-ELGGDMDMKCVN-GMSPIMTYIINIDNINPEITNIYIESLDGNKV 278 (764)
T ss_pred cCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-HcCCCCCCCCCC-CCCHHHHHHHhhhccCHHHHHHHHHhcccccc
Confidence 3444 3456789999999999995 48899888 557889999886 99999975
Q ss_pred -------------HhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHH--cCCHHHHHHHHhCCCCccccccCCCc
Q 011578 56 -------------AGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK--NGCNEAAKLLLAHGAFIEAKANNGMT 120 (482)
Q Consensus 56 -------------~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~--~g~~~~v~~Ll~~ga~~~~~d~~g~t 120 (482)
+..|+.+++++|++ .|++++.+|..|+||||+|+. .++.+++++|+++|++++.+|..|+|
T Consensus 279 ~~~~~~L~~~i~AA~~g~leiVklLLe----~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~T 354 (764)
T PHA02716 279 KNIPMILHSYITLARNIDISVVYSFLQ----PGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNT 354 (764)
T ss_pred ccchhhhHHHHHHHHcCCHHHHHHHHh----CCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCC
Confidence 34577889999998 688899999999999999864 46889999999999999999999999
Q ss_pred ceeeehhhc----------cCCChHHHHHHHhhCCCCccccCCCCCChhhh---hhcCCCChHHHHHHHhhhHHH
Q 011578 121 PLHLSVWYS----------IRSEDYATVKTLLEYNADCSAKDNEGKTPLDH---LSNGPGSAKLRELLLWHSEEQ 182 (482)
Q Consensus 121 pLh~A~~~~----------~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~---~a~~~~~~~~~~lL~~~~~~~ 182 (482)
|||+|+... ...++.+++++|+++|+|++.+|..|+||||. ++...+..+++++|+..++..
T Consensus 355 PLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~ 429 (764)
T PHA02716 355 VLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLN 429 (764)
T ss_pred HHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchh
Confidence 999986210 01368999999999999999999999999973 344567789999999877543
No 61
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.91 E-value=2.3e-24 Score=221.48 Aligned_cols=172 Identities=26% Similarity=0.292 Sum_probs=140.0
Q ss_pred cccccc-CCCCCchHhHH-----HHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHH--hCCcHHHHHHHHcCCCCC
Q 011578 3 KNQDRR-SRSAKPATIHG-----CAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSA--GYNKAEIVKSLLEWPGND 74 (482)
Q Consensus 3 ~~~~~~-~~~~~~t~l~~-----a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~--~~g~~~~v~~Ll~~~~~~ 74 (482)
.|.+.. ....+.||||. |+..|+.+.++.|+. .+.+++..+.. |.||||+|+ ..|+.+++++|++ .
T Consensus 57 ~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~-~ga~i~~~d~~-g~tpL~~A~~~~~~~~~iv~~Ll~----~ 130 (480)
T PHA03100 57 NGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLE-YGANVNAPDNN-GITPLLYAISKKSNSYSIVEYLLD----N 130 (480)
T ss_pred cCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHH-CCCCCCCCCCC-CCchhhHHHhcccChHHHHHHHHH----c
Confidence 454443 34567889999 999999999888885 45566777776 889999999 8899999999998 5
Q ss_pred CcccccCcCCCChHHHHHHHcC--CHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccC
Q 011578 75 KVELEAQNMYGETPLHMAAKNG--CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 152 (482)
Q Consensus 75 ~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d 152 (482)
|++++..+..|.||||+|+..| +.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++..+
T Consensus 131 g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~----~~~~~~iv~~Ll~~ga~~~~~~ 206 (480)
T PHA03100 131 GANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAV----EKGNIDVIKFLLDNGADINAGD 206 (480)
T ss_pred CCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHH----HhCCHHHHHHHHHcCCCccCCC
Confidence 7778888888999999999988 889999999999999888888999999998 7788899999999999998888
Q ss_pred CCC------CChhhhhhcCCCC--hHHHHHHHhhhHHHHHH
Q 011578 153 NEG------KTPLDHLSNGPGS--AKLRELLLWHSEEQRKR 185 (482)
Q Consensus 153 ~~g------~tpl~~~a~~~~~--~~~~~lL~~~~~~~~~~ 185 (482)
..| .||||.++. .+. .+++++|+.+|++.+.+
T Consensus 207 ~~~~~~~~~~t~l~~a~~-~~~~~~~iv~~Ll~~g~din~~ 246 (480)
T PHA03100 207 IETLLFTIFETPLHIAAC-YNEITLEVVNYLLSYGVPINIK 246 (480)
T ss_pred CCCCcHHHHHhHHHHHHH-hCcCcHHHHHHHHHcCCCCCCC
Confidence 888 888855554 455 77888888887765544
No 62
>PHA02795 ankyrin-like protein; Provisional
Probab=99.91 E-value=4.3e-24 Score=207.70 Aligned_cols=168 Identities=15% Similarity=0.078 Sum_probs=143.5
Q ss_pred CCCCCchHhHHHHH--cCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcc--cccCcCC
Q 011578 9 SRSAKPATIHGCAQ--SGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE--LEAQNMY 84 (482)
Q Consensus 9 ~~~~~~t~l~~a~~--~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~--~~~~~~~ 84 (482)
....++|+||.++. .|+.+.|+.|+ .+|++++..+ +.||||+|+..|+.+++++|+++|++.... .+..+..
T Consensus 112 ~~~~~~~~L~~~~~n~~n~~eiV~~LI-~~GADIn~~~---~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~ 187 (437)
T PHA02795 112 NCNSVQDLLLYYLSNAYVEIDIVDFMV-DHGAVIYKIE---CLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKII 187 (437)
T ss_pred ccccccHHHHHHHHhcCCCHHHHHHHH-HCCCCCCCCC---CCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhh
Confidence 56679999999999 99999999998 5677788743 689999999999999999999975421111 1112245
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhc
Q 011578 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164 (482)
Q Consensus 85 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~ 164 (482)
+.||+|.|+..++.+++++|+++|+++|.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus 188 ~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa----~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~ 263 (437)
T PHA02795 188 QYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAI----YAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVD 263 (437)
T ss_pred ccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 889999999999999999999999999999999999999999 8899999999999999999999999999977776
Q ss_pred CCC-------ChHHHHHHHhhhHHHHH
Q 011578 165 GPG-------SAKLRELLLWHSEEQRK 184 (482)
Q Consensus 165 ~~~-------~~~~~~lL~~~~~~~~~ 184 (482)
.+. +.+++++|+++|++...
T Consensus 264 ~g~~~~~~~~~~eIvelLL~~gadI~~ 290 (437)
T PHA02795 264 RGSVIARRETHLKILEILLREPLSIDC 290 (437)
T ss_pred cCCcccccccHHHHHHHHHhCCCCCCc
Confidence 653 46899999998876543
No 63
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.90 E-value=4.5e-24 Score=212.47 Aligned_cols=166 Identities=28% Similarity=0.392 Sum_probs=145.1
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCC--------------ccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCC
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSL--------------LNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND 74 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~--------------~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~ 74 (482)
.++.|.+|||.|+..|+++.++.+|..+... +|..|.. |.||||+||..|+.++|..|+. .
T Consensus 221 ~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~d-g~tpLH~a~r~G~~~svd~Ll~----~ 295 (929)
T KOG0510|consen 221 DNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDND-GCTPLHYAARQGGPESVDNLLG----F 295 (929)
T ss_pred ccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhccccc-CCchHHHHHHcCChhHHHHHHH----c
Confidence 3567899999999999999999999754332 3444554 9999999999999999999999 6
Q ss_pred CcccccCcCCCChHHHHHHHcCCHHHHHHHHh-CC-CCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCcc---
Q 011578 75 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLA-HG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS--- 149 (482)
Q Consensus 75 ~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~g-a~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~--- 149 (482)
|++++.++.++.||||.||..|++++|+-|++ .| ...|..|-.|+||||+|+ +.||..++++|+..||+..
T Consensus 296 Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa----~~gH~~v~qlLl~~GA~~~~~~ 371 (929)
T KOG0510|consen 296 GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAA----KSGHDRVVQLLLNKGALFLNMS 371 (929)
T ss_pred CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhh----hcCHHHHHHHHHhcChhhhccc
Confidence 89999999999999999999999999999999 55 568899999999999999 9999999999999999887
Q ss_pred ccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHH
Q 011578 150 AKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 184 (482)
Q Consensus 150 ~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~ 184 (482)
..|.+|.||| |.|+..++..++.+|+.+|++...
T Consensus 372 e~D~dg~TaL-H~Aa~~g~~~av~~Li~~Ga~I~~ 405 (929)
T KOG0510|consen 372 EADSDGNTAL-HLAAKYGNTSAVQKLISHGADIGV 405 (929)
T ss_pred ccccCCchhh-hHHHHhccHHHHHHHHHcCCceee
Confidence 4599999999 455557788889999999998743
No 64
>PHA02798 ankyrin-like protein; Provisional
Probab=99.90 E-value=7.1e-24 Score=217.42 Aligned_cols=180 Identities=21% Similarity=0.185 Sum_probs=147.7
Q ss_pred Ccccccc-CCCCCchHhHHHHHc-----CCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCC---cHHHHHHHHcCCC
Q 011578 2 QKNQDRR-SRSAKPATIHGCAQS-----GDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN---KAEIVKSLLEWPG 72 (482)
Q Consensus 2 ~~~~~~~-~~~~~~t~l~~a~~~-----g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g---~~~~v~~Ll~~~~ 72 (482)
+.|.+.. .+..|.||||.|+.. +..++++.|+ +.|.++|..+.. |+||||+|+..+ +.+++++|++
T Consensus 59 ~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll-~~GadiN~~d~~-G~TpLh~a~~~~~~~~~~iv~~Ll~--- 133 (489)
T PHA02798 59 NLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILI-ENGADINKKNSD-GETPLYCLLSNGYINNLEILLFMIE--- 133 (489)
T ss_pred HCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHH-HCCCCCCCCCCC-cCcHHHHHHHcCCcChHHHHHHHHH---
Confidence 3455543 567899999998864 6788888888 567889999986 999999999875 7899999999
Q ss_pred CCCcccccCcCCCChHHHHHHHcCC---HHHHHHHHhCCCCccccc-cCCCcceeeehhhccCCChHHHHHHHhhCCCC-
Q 011578 73 NDKVELEAQNMYGETPLHMAAKNGC---NEAAKLLLAHGAFIEAKA-NNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD- 147 (482)
Q Consensus 73 ~~~~~~~~~~~~g~tpLh~A~~~g~---~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad- 147 (482)
.|++++.+|..|.||||+|+..++ .+++++|+++|++++..+ ..|.||||.++.++...++.+++++|+++|++
T Consensus 134 -~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i 212 (489)
T PHA02798 134 -NGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFII 212 (489)
T ss_pred -cCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCc
Confidence 688999999999999999999988 999999999999999875 57899999887554455678888888877764
Q ss_pred --------------------------------------ccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHhhH
Q 011578 148 --------------------------------------CSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRAL 188 (482)
Q Consensus 148 --------------------------------------~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~~~ 188 (482)
+|.+|..|+||||+|+ ..++.+++++|++.|++++.....
T Consensus 213 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~-~~~~~~~v~~LL~~GAdin~~d~~ 290 (489)
T PHA02798 213 NKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSV-SHNNRKIFEYLLQLGGDINIITEL 290 (489)
T ss_pred ccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHH-HcCcHHHHHHHHHcCCcccccCCC
Confidence 4456778999995554 567888999999999998766533
No 65
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.90 E-value=1.1e-23 Score=184.47 Aligned_cols=185 Identities=24% Similarity=0.327 Sum_probs=126.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++||+.++..+.-++...+ .......|++||||||+||||+|+.||++++. +|..++
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~-----------~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~-------~~~~~s 82 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAK-----------KRGEALDHMLFYGPPGLGKTTLARIIANELGV-------NFKITS 82 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHH-----------CTTS---EEEEESSTTSSHHHHHHHHHHHCT---------EEEEE
T ss_pred CCHHHccCcHHHHhhhHHHHHHHH-----------hcCCCcceEEEECCCccchhHHHHHHHhccCC-------CeEecc
Confidence 568899999999999887765543 11235679999999999999999999999987 677666
Q ss_pred cccccccccccchhhHHHHHHh-cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc----------------
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------- 345 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~-a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---------------- 345 (482)
++.+.. ...+..++.. .++.|||||||+++.+..| +.|+..|+++.
T Consensus 83 g~~i~k------~~dl~~il~~l~~~~ILFIDEIHRlnk~~q-----------e~LlpamEd~~idiiiG~g~~ar~~~~ 145 (233)
T PF05496_consen 83 GPAIEK------AGDLAAILTNLKEGDILFIDEIHRLNKAQQ-----------EILLPAMEDGKIDIIIGKGPNARSIRI 145 (233)
T ss_dssp CCC--S------CHHHHHHHHT--TT-EEEECTCCC--HHHH-----------HHHHHHHHCSEEEEEBSSSSS-BEEEE
T ss_pred chhhhh------HHHHHHHHHhcCCCcEEEEechhhccHHHH-----------HHHHHHhccCeEEEEeccccccceeec
Confidence 544321 1234444544 3568999999999998655 88999999754
Q ss_pred ----EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHH
Q 011578 346 ----VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 421 (482)
Q Consensus 346 ----~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (482)
+++|+|||...+. .++|++||....++..|+.+|+.+|+++..... ..+++.++..+++.
T Consensus 146 ~l~~FTligATTr~g~l-----s~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l-----------~i~i~~~~~~~Ia~ 209 (233)
T PF05496_consen 146 NLPPFTLIGATTRAGLL-----SSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL-----------NIEIDEDAAEEIAR 209 (233)
T ss_dssp E----EEEEEESSGCCT-----SHCCCTTSSEEEE----THHHHHHHHHHCCHCT-----------T-EE-HHHHHHHHH
T ss_pred cCCCceEeeeecccccc-----chhHHhhcceecchhcCCHHHHHHHHHHHHHHh-----------CCCcCHHHHHHHHH
Confidence 4677777766553 789999999999999999999999999865543 35678888888888
Q ss_pred HHhhHhhccccCcchhHHHHHHHH
Q 011578 422 KETTEKQRREMNGGLVDPMLVNAR 445 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~l~~~~~~a~ 445 (482)
++ -|..|-..++++++.
T Consensus 210 rs-------rGtPRiAnrll~rvr 226 (233)
T PF05496_consen 210 RS-------RGTPRIANRLLRRVR 226 (233)
T ss_dssp CT-------TTSHHHHHHHHHHHC
T ss_pred hc-------CCChHHHHHHHHHHH
Confidence 65 456677777776653
No 66
>PHA03095 ankyrin-like protein; Provisional
Probab=99.90 E-value=2.8e-23 Score=212.96 Aligned_cols=169 Identities=19% Similarity=0.169 Sum_probs=104.2
Q ss_pred CCCCchHhHHHHHcC-CHHHHHHHHhhCCCCccCCCCCCCChHHHHHH--hCCcHHHHHHHHcCCCC-------------
Q 011578 10 RSAKPATIHGCAQSG-DLLAFQRLLRENPSLLNERNPVMAQTPLHVSA--GYNKAEIVKSLLEWPGN------------- 73 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g-~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~--~~g~~~~v~~Ll~~~~~------------- 73 (482)
+..|.||||+|+..| +.+.++.|+ +.+.++|..+.. |+||||+|+ ..++.+++++|+++|++
T Consensus 80 ~~~g~TpLh~A~~~~~~~~iv~lLl-~~ga~in~~~~~-g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~ 157 (471)
T PHA03095 80 ERCGFTPLHLYLYNATTLDVIKLLI-KAGADVNAKDKV-GRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLA 157 (471)
T ss_pred CCCCCCHHHHHHHcCCcHHHHHHHH-HcCCCCCCCCCC-CCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHH
Confidence 346777777777777 366666555 445666666665 777777777 44566677777663221
Q ss_pred ------------------CCcccccCcCCCChHHHHHHHc--CCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCC
Q 011578 74 ------------------DKVELEAQNMYGETPLHMAAKN--GCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSE 133 (482)
Q Consensus 74 ------------------~~~~~~~~~~~g~tpLh~A~~~--g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~ 133 (482)
.|++++..|..|+||||+|+.. ++.+++++|+++|++++.+|..|+||||+|+ ..+
T Consensus 158 ~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa----~~~ 233 (471)
T PHA03095 158 VLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMA----TGS 233 (471)
T ss_pred HHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH----hcC
Confidence 1222333344444444444432 4456667777777777777777777777777 434
Q ss_pred h--HHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHH
Q 011578 134 D--YATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 134 ~--~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
+ ..++..|++.|+++|.+|..|+||||+| +..++.+++++|++.|++++..
T Consensus 234 ~~~~~~v~~ll~~g~din~~d~~g~TpLh~A-~~~~~~~~v~~LL~~gad~n~~ 286 (471)
T PHA03095 234 SCKRSLVLPLLIAGISINARNRYGQTPLHYA-AVFNNPRACRRLIALGADINAV 286 (471)
T ss_pred CchHHHHHHHHHcCCCCCCcCCCCCCHHHHH-HHcCCHHHHHHHHHcCCCCccc
Confidence 3 3566677777777777777777777443 3455666667777777766544
No 67
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.90 E-value=1.1e-23 Score=224.96 Aligned_cols=171 Identities=25% Similarity=0.305 Sum_probs=91.9
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCC-cHHHHHHHHcCCCC----------------
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN-KAEIVKSLLEWPGN---------------- 73 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g-~~~~v~~Ll~~~~~---------------- 73 (482)
..|.||||+|+..|+...+..+|...+.+++..+.. |.||||+|+..| +.+++++|+..|++
T Consensus 271 ~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~-g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~ 349 (682)
T PHA02876 271 DCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIK-GETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQAS 349 (682)
T ss_pred CCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCC-CCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHH
Confidence 345556666665555533222333444555555543 555555555555 34555555542110
Q ss_pred --------------CCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHH
Q 011578 74 --------------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVK 139 (482)
Q Consensus 74 --------------~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~ 139 (482)
.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+. ..+...+++
T Consensus 350 ~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~---~~~~~~~vk 426 (682)
T PHA02876 350 TLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALC---GTNPYMSVK 426 (682)
T ss_pred HhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHH---cCCHHHHHH
Confidence 345555555555666666666666666666666666665555555666665551 122344556
Q ss_pred HHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHH
Q 011578 140 TLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 140 ~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
+|+++|+++|.+|..|+||||+|+..+...+++++|+++|++++..
T Consensus 427 ~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~ 472 (682)
T PHA02876 427 TLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAI 472 (682)
T ss_pred HHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCC
Confidence 6666666666666666666655554444556666666666654443
No 68
>PHA02946 ankyin-like protein; Provisional
Probab=99.90 E-value=2.2e-23 Score=209.57 Aligned_cols=170 Identities=16% Similarity=0.222 Sum_probs=142.2
Q ss_pred cccc-ccCCCCCchHhHHHHHcCC--HHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccc
Q 011578 3 KNQD-RRSRSAKPATIHGCAQSGD--LLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79 (482)
Q Consensus 3 ~~~~-~~~~~~~~t~l~~a~~~g~--~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 79 (482)
.|.+ ...+..|.||||+|+..++ .+.++.|+ +.+.++|...+..|.|||| ||..|+.+++++|++ .|++++
T Consensus 94 ~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl-~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~----~gad~~ 167 (446)
T PHA02946 94 HGADPNACDKQHKTPLYYLSGTDDEVIERINLLV-QYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMS----IGFEAR 167 (446)
T ss_pred CcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHH-HcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHh----cccccc
Confidence 4444 3456789999999998764 78888777 5577777543334999998 667799999999999 578899
Q ss_pred cCcCCCChHHHHHHHcCC--HHHHHHHHhCCCCccccccCCCcceeeehhhccCCC--hHHHHHHHhhCCCCccccCCCC
Q 011578 80 AQNMYGETPLHMAAKNGC--NEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSE--DYATVKTLLEYNADCSAKDNEG 155 (482)
Q Consensus 80 ~~~~~g~tpLh~A~~~g~--~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~--~~~~v~~Ll~~gad~~~~d~~g 155 (482)
.+|..|+||||+|+..++ .+++++|+++|++++.+|.+|+||||+|+ ..+ +.+++++|++ |+++|.+|..|
T Consensus 168 ~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa----~~~~~~~~iv~lLl~-gadin~~d~~G 242 (446)
T PHA02946 168 IVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVC----SKTVKNVDIINLLLP-STDVNKQNKFG 242 (446)
T ss_pred ccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH----HcCCCcHHHHHHHHc-CCCCCCCCCCC
Confidence 999999999999987554 68999999999999999999999999999 544 7899999995 99999999999
Q ss_pred CChhhhhhcCCCChHHHHHHHhhhHHHH
Q 011578 156 KTPLDHLSNGPGSAKLRELLLWHSEEQR 183 (482)
Q Consensus 156 ~tpl~~~a~~~~~~~~~~lL~~~~~~~~ 183 (482)
+||||+|+..++..+++++|+.+|+...
T Consensus 243 ~TpLh~A~~~~~~~~~~~~Ll~~g~~~~ 270 (446)
T PHA02946 243 DSPLTLLIKTLSPAHLINKLLSTSNVIT 270 (446)
T ss_pred CCHHHHHHHhCChHHHHHHHHhCCCCCC
Confidence 9999877776666788889998887544
No 69
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.90 E-value=1.3e-23 Score=215.82 Aligned_cols=178 Identities=17% Similarity=0.198 Sum_probs=117.6
Q ss_pred CccccccCCCCCchHhHHHHHcC------CHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhC---CcHHHHHHHHcCCC
Q 011578 2 QKNQDRRSRSAKPATIHGCAQSG------DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY---NKAEIVKSLLEWPG 72 (482)
Q Consensus 2 ~~~~~~~~~~~~~t~l~~a~~~g------~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~ 72 (482)
+.|.|.+....+.||||.|+..+ +.++|+.|| +.|.++|..+.. |+||||+|+.. |+.+++++|++
T Consensus 58 ~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~~Ll-~~Gadin~~d~~-g~tpL~~a~~~~~~~~~eiv~~Ll~--- 132 (494)
T PHA02989 58 DNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLL-KFGADINLKTFN-GVSPIVCFIYNSNINNCDMLRFLLS--- 132 (494)
T ss_pred HcCCCccCCCCCCCcHHHHHhccCcchhhHHHHHHHHH-HCCCCCCCCCCC-CCcHHHHHHHhcccCcHHHHHHHHH---
Confidence 34555555555677777776544 345666555 456667777765 77777766544 56777777777
Q ss_pred CCCccc-ccCcCCCChHHHHHHHc--CCHHHHHHHHhCCCCccc-cccCCCcceeeehhhccCCChHHHHHHHhhCCCCc
Q 011578 73 NDKVEL-EAQNMYGETPLHMAAKN--GCNEAAKLLLAHGAFIEA-KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADC 148 (482)
Q Consensus 73 ~~~~~~-~~~~~~g~tpLh~A~~~--g~~~~v~~Ll~~ga~~~~-~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~ 148 (482)
.|+++ +.+|..|+||||+|+.. ++.+++++|+++|++++. .+..|.||||+|+..+...++.+++++|+++|+++
T Consensus 133 -~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v 211 (494)
T PHA02989 133 -KGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI 211 (494)
T ss_pred -CCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCc
Confidence 46677 66777777777776643 567777777777777776 56677777777764433445777777777777665
Q ss_pred cc--------------------------------------cCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 149 SA--------------------------------------KDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 149 ~~--------------------------------------~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
+. +|..|+||||+|+ ..++.+++++|++.|++++.+.
T Consensus 212 n~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa-~~~~~~~v~~LL~~Gadin~~d 286 (494)
T PHA02989 212 ETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISA-KVDNYEAFNYLLKLGDDIYNVS 286 (494)
T ss_pred cccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHH-HhcCHHHHHHHHHcCCCccccC
Confidence 43 3445777874444 4566777777777777766554
No 70
>PHA02917 ankyrin-like protein; Provisional
Probab=99.90 E-value=2.2e-23 Score=217.52 Aligned_cols=175 Identities=18% Similarity=0.157 Sum_probs=130.3
Q ss_pred ccccCCCCCchHhHHHHHc---CCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHH----HHHHHHcCCC-----
Q 011578 5 QDRRSRSAKPATIHGCAQS---GDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAE----IVKSLLEWPG----- 72 (482)
Q Consensus 5 ~~~~~~~~~~t~l~~a~~~---g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~----~v~~Ll~~~~----- 72 (482)
.....+..|.||||+||.. |+.+.|+.||. .|.+++..+.. |+||||+|+..|+.+ +++.|++.++
T Consensus 24 ~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~-~ga~v~~~~~~-g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~ 101 (661)
T PHA02917 24 PNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLD-SGTNPLHKNWR-QLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIN 101 (661)
T ss_pred cccccCCCCCcHHHHHHHhhhcCcHHHHHHHHH-CCCCccccCCC-CCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCC
Confidence 3344577899999997655 88999999985 57788888776 999999998877632 3344443211
Q ss_pred ----------------------CCCcccccCcCCCChHHHHH--HHcCCHHHHHHHHhCCCCcccccc---CC-------
Q 011578 73 ----------------------NDKVELEAQNMYGETPLHMA--AKNGCNEAAKLLLAHGAFIEAKAN---NG------- 118 (482)
Q Consensus 73 ----------------------~~~~~~~~~~~~g~tpLh~A--~~~g~~~~v~~Ll~~ga~~~~~d~---~g------- 118 (482)
..|+++|.+|..|+||||+| +..|+.+++++|+++||++|..|. .|
T Consensus 102 ~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~ 181 (661)
T PHA02917 102 DFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQ 181 (661)
T ss_pred CcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccc
Confidence 05788899999999999854 357899999999999999986553 34
Q ss_pred ----Ccceeeehhhc-------cCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCC-hHHHHHHHhhhHHH
Q 011578 119 ----MTPLHLSVWYS-------IRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS-AKLRELLLWHSEEQ 182 (482)
Q Consensus 119 ----~tpLh~A~~~~-------~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~-~~~~~lL~~~~~~~ 182 (482)
.||||+|+... ...++.+++++|+++|+|+|.+|.+|.||||+|+..++. .+++++|.+ |++.
T Consensus 182 ~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~ 256 (661)
T PHA02917 182 PRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDN 256 (661)
T ss_pred ccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcc
Confidence 59999987311 014578999999999999999999999999777665543 368888875 5443
No 71
>PHA02798 ankyrin-like protein; Provisional
Probab=99.90 E-value=2.3e-23 Score=213.64 Aligned_cols=171 Identities=22% Similarity=0.201 Sum_probs=143.7
Q ss_pred Cccccc-cCCCCCchHhHHHHHcC---CHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCc---HHHHHHHHcCCCCC
Q 011578 2 QKNQDR-RSRSAKPATIHGCAQSG---DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK---AEIVKSLLEWPGND 74 (482)
Q Consensus 2 ~~~~~~-~~~~~~~t~l~~a~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~---~~~v~~Ll~~~~~~ 74 (482)
+.|.|. ..+..|.||||+|+..| +.+.++.|+ +.|.+++..+.. |.||||+|+..|+ .+++++|++ .
T Consensus 97 ~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll-~~Gadvn~~d~~-g~tpL~~a~~~~~~~~~~vv~~Ll~----~ 170 (489)
T PHA02798 97 ENGADINKKNSDGETPLYCLLSNGYINNLEILLFMI-ENGADTTLLDKD-GFTMLQVYLQSNHHIDIEIIKLLLE----K 170 (489)
T ss_pred HCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHH-HcCCCccccCCC-CCcHHHHHHHcCCcchHHHHHHHHH----h
Confidence 345553 45568999999999986 678999888 557889999887 9999999999998 999999999 5
Q ss_pred CcccccCc-CCCChHHHHHHHc----CCHHHHHHHHhCCCC---------------------------------------
Q 011578 75 KVELEAQN-MYGETPLHMAAKN----GCNEAAKLLLAHGAF--------------------------------------- 110 (482)
Q Consensus 75 ~~~~~~~~-~~g~tpLh~A~~~----g~~~~v~~Ll~~ga~--------------------------------------- 110 (482)
|++++.++ ..|.||||.++.. ++.+++++|+++|++
T Consensus 171 gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~d 250 (489)
T PHA02798 171 GVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYID 250 (489)
T ss_pred CCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCC
Confidence 78888875 5789999998764 478899999888764
Q ss_pred ccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHH
Q 011578 111 IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 183 (482)
Q Consensus 111 ~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~ 183 (482)
+|.+|..|+||||+|+ ..|+.+++++|+++|||++.+|..|+|||| .|...++..++..|++++++.+
T Consensus 251 vN~~d~~G~TPL~~A~----~~~~~~~v~~LL~~GAdin~~d~~G~TpL~-~A~~~~~~~iv~~lL~~~~~~~ 318 (489)
T PHA02798 251 INQVDELGFNPLYYSV----SHNNRKIFEYLLQLGGDINIITELGNTCLF-TAFENESKFIFNSILNKKPNKN 318 (489)
T ss_pred CCCcCcCCccHHHHHH----HcCcHHHHHHHHHcCCcccccCCCCCcHHH-HHHHcCcHHHHHHHHccCCCHH
Confidence 4456778999999999 888999999999999999999999999995 4555778888888888877654
No 72
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.8e-23 Score=186.07 Aligned_cols=257 Identities=17% Similarity=0.242 Sum_probs=173.7
Q ss_pred HHHHHHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHH--cCCCCC
Q 011578 198 MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM--VGILPT 275 (482)
Q Consensus 198 ~~~~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~--~~~~~~ 275 (482)
..++.-.|+.++=-..+|+++..+......-.... ....+ ..-..-+|++||||||||+++|++|+.+-. ...-..
T Consensus 134 a~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~-vntnl-It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~ 211 (423)
T KOG0744|consen 134 AAEFDGLWESLIYDSNLKERLLSYAASALLFSEKK-VNTNL-ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYK 211 (423)
T ss_pred chhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcC-CCCce-eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCcccc
Confidence 34566778888888899999998765443222221 11111 113345889999999999999999998842 222334
Q ss_pred CCeEEeecccccccccccchhhHHHHHHhc------CC--cEEEEecccccccCCC----CCCChhHHHHHHHHHhhhcC
Q 011578 276 DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA------EG--GILFVDEAYRLIPMQK----ADDKDYGIEALEEIMSVMDG 343 (482)
Q Consensus 276 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a------~~--~vl~iDE~d~l~~~~~----~~~~~~~~~~~~~ll~~l~~ 343 (482)
+.++++++..+.++|++++++.+.++|.+- ++ -.++|||+++|+..|. .++...+.+++|++|++||.
T Consensus 212 ~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr 291 (423)
T KOG0744|consen 212 GQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR 291 (423)
T ss_pred ceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH
Confidence 678999999999999999999999999764 33 4667899999988763 23455677999999999997
Q ss_pred ----CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHH----H
Q 011578 344 ----GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD----A 415 (482)
Q Consensus 344 ----~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~----~ 415 (482)
..+++.+| +|-.+.+ |-+|-+|-|.+..+++|+.+.+.+|++.++.++... |+-.....+.. .
T Consensus 292 lK~~~NvliL~T--SNl~~si---D~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~----gIi~~~~~s~~~~~~i 362 (423)
T KOG0744|consen 292 LKRYPNVLILAT--SNLTDSI---DVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISS----GIILFHQRSTGVKEFI 362 (423)
T ss_pred hccCCCEEEEec--cchHHHH---HHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhc----CeeeeeccchhhhHHh
Confidence 34444444 4444444 888999999999999999999999999999887542 33111111110 0
Q ss_pred HHHHHHHHhh-HhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHH
Q 011578 416 IAALIEKETT-EKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 476 (482)
Q Consensus 416 l~~~~~~~~~-~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~ 476 (482)
...-+...+. .-...+..||.+|.+=-.|.... -+..+++.++|..|+-.
T Consensus 363 ~~~~~~~~~~~~~~~~gLSGRtlrkLP~Laha~y-----------~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 363 KYQKALRNILIELSTVGLSGRTLRKLPLLAHAEY-----------FRTFTVDLSNFLLALLE 413 (423)
T ss_pred HhhHhHHHHHHHHhhcCCccchHhhhhHHHHHhc-----------cCCCccChHHHHHHHHH
Confidence 0111111111 11234567888887766665543 11247899999877654
No 73
>PHA03095 ankyrin-like protein; Provisional
Probab=99.90 E-value=1.9e-23 Score=214.24 Aligned_cols=172 Identities=23% Similarity=0.247 Sum_probs=147.6
Q ss_pred cCCCCCchHhHHHHHcC---CHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCC-cHHHHHHHHcCCCCCCcccccCcC
Q 011578 8 RSRSAKPATIHGCAQSG---DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN-KAEIVKSLLEWPGNDKVELEAQNM 83 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~ 83 (482)
..+..|.||||+|+..| +.+.++.|+ +.|.++|..+.. |+||||+|+..| +.+++++|++ .|++++.+|.
T Consensus 42 ~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll-~~Gadin~~~~~-g~TpLh~A~~~~~~~~iv~lLl~----~ga~in~~~~ 115 (471)
T PHA03095 42 FRGEYGKTPLHLYLHYSSEKVKDIVRLLL-EAGADVNAPERC-GFTPLHLYLYNATTLDVIKLLIK----AGADVNAKDK 115 (471)
T ss_pred cCCCCCCCHHHHHHHhcCCChHHHHHHHH-HCCCCCCCCCCC-CCCHHHHHHHcCCcHHHHHHHHH----cCCCCCCCCC
Confidence 34566899999999998 899999888 567889998885 999999999999 5999999999 5788999999
Q ss_pred CCChHHHHHH--HcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhh
Q 011578 84 YGETPLHMAA--KNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161 (482)
Q Consensus 84 ~g~tpLh~A~--~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~ 161 (482)
.|+||||+|+ ..++.+++++|+++|++++.+|..|.||||+|+.. ..++.+++++|+++|++++..|..|+||||+
T Consensus 116 ~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~--~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~ 193 (471)
T PHA03095 116 VGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKS--RNANVELLRLLIDAGADVYAVDDRFRSLLHH 193 (471)
T ss_pred CCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc--CCCCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence 9999999999 56688999999999999999999999999998833 2347899999999999999999999999977
Q ss_pred hhcC-CCChHHHHHHHhhhHHHHHHhh
Q 011578 162 LSNG-PGSAKLRELLLWHSEEQRKRRA 187 (482)
Q Consensus 162 ~a~~-~~~~~~~~lL~~~~~~~~~~~~ 187 (482)
++.. .+...++++|+.+|++++.+..
T Consensus 194 ~~~~~~~~~~i~~~Ll~~g~~~~~~d~ 220 (471)
T PHA03095 194 HLQSFKPRARIVRELIRAGCDPAATDM 220 (471)
T ss_pred HHHHCCCcHHHHHHHHHcCCCCcccCC
Confidence 7653 5677888899989888766543
No 74
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.90 E-value=2.8e-23 Score=169.94 Aligned_cols=143 Identities=33% Similarity=0.346 Sum_probs=128.9
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHH
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~ 91 (482)
+-.-.+.+|+..+.+..|+.||+..+..+|.+|.+ |+||||-|+++||.+||+.|+. .|++++.+...|+||||-
T Consensus 62 dp~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D-~YTpLHRAaYn~h~div~~ll~----~gAn~~a~T~~GWTPLhS 136 (228)
T KOG0512|consen 62 DPIRLLLWAAEKNRLTEVQRLLSEKANHVNTRDED-EYTPLHRAAYNGHLDIVHELLL----SGANKEAKTNEGWTPLHS 136 (228)
T ss_pred CHHHHHHHHHhhccHHHHHHHHHhccccccccccc-cccHHHHHHhcCchHHHHHHHH----ccCCcccccccCccchhh
Confidence 33455889999999999999999999999999997 9999999999999999999998 688899999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHh-hCCCCccccCCCCCChhhhh
Q 011578 92 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL-EYNADCSAKDNEGKTPLDHL 162 (482)
Q Consensus 92 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll-~~gad~~~~d~~g~tpl~~~ 162 (482)
||.-.+.+|+..|+++|+|||+..+..+||||+|+- ..+....+.+|+ ..+.++..++..+.||+++|
T Consensus 137 AckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~---~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iA 205 (228)
T KOG0512|consen 137 ACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAG---NRNSRDTLELLLHDRYIHPGLKNNLEETAFDIA 205 (228)
T ss_pred hhcccchhHHHHHHhccCcccccccccchhhHHhhc---ccchHHHHHHHhhccccChhhhcCccchHHHHH
Confidence 999999999999999999999999999999999993 345566777776 56899999999999999444
No 75
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.90 E-value=2.1e-23 Score=226.17 Aligned_cols=199 Identities=11% Similarity=0.128 Sum_probs=147.3
Q ss_pred CCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccc----------cc--------------
Q 011578 237 KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF----------VG-------------- 292 (482)
Q Consensus 237 ~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g-------------- 292 (482)
.++..+|.++||+||||||||++||++|.+++. ||+.+++++++..+ +|
T Consensus 1624 rLGl~pPKGILLiGPPGTGKTlLAKALA~es~V-------PFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1624 RLALSPSRGILVIGSIGTGRSYLVKYLATNSYV-------PFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred HcCCCCCCceEEECCCCCCHHHHHHHHHHhcCC-------ceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 356678999999999999999999999999887 99999999887654 22
Q ss_pred -----------------cchh--hHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-------
Q 011578 293 -----------------HTGP--KTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------- 343 (482)
Q Consensus 293 -----------------~~~~--~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~------- 343 (482)
.++. .++.+|+.|+ +|||||||||.+..+.. . ...+++|+..|++
T Consensus 1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds---~---~ltL~qLLneLDg~~~~~s~ 1770 (2281)
T CHL00206 1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES---N---YLSLGLLVNSLSRDCERCST 1770 (2281)
T ss_pred cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc---c---eehHHHHHHHhccccccCCC
Confidence 2222 3778888774 59999999999987522 1 1236888888874
Q ss_pred CcEEEEEecCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCc-ccHHHHHHHH
Q 011578 344 GKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSS-CSMDAIAALI 420 (482)
Q Consensus 344 ~~~~vi~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 420 (482)
..|+||+||+.... + ||||++ |||+.|.++.|+..+|.+++...+... ++.+... ++.+.++..+
T Consensus 1771 ~~VIVIAATNRPD~--L---DPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tk-------g~~L~~~~vdl~~LA~~T 1838 (2281)
T CHL00206 1771 RNILVIASTHIPQK--V---DPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTR-------GFHLEKKMFHTNGFGSIT 1838 (2281)
T ss_pred CCEEEEEeCCCccc--C---CHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhc-------CCCCCcccccHHHHHHhC
Confidence 24778888665443 2 999998 999999999999999999887543221 3333322 3455555555
Q ss_pred HHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 421 EKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
. +.+||+|.+++.+|...+..+- ...|+.+||..|+.++.
T Consensus 1839 ~---------GfSGADLanLvNEAaliAirq~---------ks~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1839 M---------GSNARDLVALTNEALSISITQK---------KSIIDTNTIRSALHRQT 1878 (2281)
T ss_pred C---------CCCHHHHHHHHHHHHHHHHHcC---------CCccCHHHHHHHHHHHH
Confidence 4 4568999999999988774432 24688899999988774
No 76
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.90 E-value=2.9e-23 Score=213.18 Aligned_cols=168 Identities=22% Similarity=0.285 Sum_probs=137.2
Q ss_pred Ccccccc-CCCCCchHhHHHHHc---CCHHHHHHHHhhCCCCc-cCCCCCCCChHHHHHHhC--CcHHHHHHHHcCCCCC
Q 011578 2 QKNQDRR-SRSAKPATIHGCAQS---GDLLAFQRLLRENPSLL-NERNPVMAQTPLHVSAGY--NKAEIVKSLLEWPGND 74 (482)
Q Consensus 2 ~~~~~~~-~~~~~~t~l~~a~~~---g~~~~v~~ll~~~~~~~-~~~~~~~g~tpLh~A~~~--g~~~~v~~Ll~~~~~~ 74 (482)
+.|+|.+ .+..|.||||.|+.. |+.+.|+.||+ .|.++ +..+.. |+||||+|+.. ++.++|++|++ .
T Consensus 96 ~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~-~Gadin~~~d~~-g~tpLh~a~~~~~~~~~iv~~Ll~----~ 169 (494)
T PHA02989 96 KFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLS-KGINVNDVKNSR-GYNLLHMYLESFSVKKDVIKILLS----F 169 (494)
T ss_pred HCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHH-CCCCcccccCCC-CCCHHHHHHHhccCCHHHHHHHHH----c
Confidence 4555543 456799999988765 67899998885 57778 677765 99999998754 68999999999 5
Q ss_pred Cccccc-CcCCCChHHHHHHHcC----CHHHHHHHHhCCCCccc------------------------------------
Q 011578 75 KVELEA-QNMYGETPLHMAAKNG----CNEAAKLLLAHGAFIEA------------------------------------ 113 (482)
Q Consensus 75 ~~~~~~-~~~~g~tpLh~A~~~g----~~~~v~~Ll~~ga~~~~------------------------------------ 113 (482)
|++++. .+..|.||||+|+..+ +.+++++|+++|++++.
T Consensus 170 Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~adv 249 (494)
T PHA02989 170 GVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKI 249 (494)
T ss_pred CCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCC
Confidence 777887 6789999999998764 88999999999887654
Q ss_pred --cccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhH
Q 011578 114 --KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 180 (482)
Q Consensus 114 --~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~ 180 (482)
+|..|+||||+|+ ..++.+++++|+++|+|++.+|..|+||||+|+ ..++.+++++|++.+.
T Consensus 250 n~~d~~G~TpL~~Aa----~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~-~~~~~~iv~~LL~~~p 313 (494)
T PHA02989 250 NKKDKKGFNPLLISA----KVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAI-KHGNIDMLNRILQLKP 313 (494)
T ss_pred CCCCCCCCCHHHHHH----HhcCHHHHHHHHHcCCCccccCCCCCCHHHHHH-HcCCHHHHHHHHhcCC
Confidence 4556999999999 788999999999999999999999999995554 5677788888886653
No 77
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.89 E-value=3.6e-23 Score=220.89 Aligned_cols=164 Identities=27% Similarity=0.306 Sum_probs=144.1
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcH-HHHHHHHcCCCCCCcccccCcCCCChHHH
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKA-EIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh 90 (482)
.+.++|+.|+..++.+.++.++. .+.+++..+.. |+||||+|+..|+. +++++|++ .|++++.+|..|.||||
T Consensus 239 ~~~~~L~~ai~~~~~~~~~~Ll~-~g~~vn~~d~~-g~TpLh~Aa~~~~~~~iv~lLl~----~gadin~~d~~g~TpLh 312 (682)
T PHA02876 239 KNDLSLLKAIRNEDLETSLLLYD-AGFSVNSIDDC-KNTPLHHASQAPSLSRLVPKLLE----RGADVNAKNIKGETPLY 312 (682)
T ss_pred CCcHHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCC-CCCHHHHHHhCCCHHHHHHHHHH----CCCCCCCcCCCCCCHHH
Confidence 45689999999999999998874 56778888876 99999999999996 68999998 67889999999999999
Q ss_pred HHHHcC-CHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCCh
Q 011578 91 MAAKNG-CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 169 (482)
Q Consensus 91 ~A~~~g-~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~ 169 (482)
+|+..| +.+++++|+..|++++..|..|+||||+|+. ..++.+++.+|++.|++++.+|..|+||||+|+. .++.
T Consensus 313 ~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~---~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~-~~~~ 388 (682)
T PHA02876 313 LMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQAST---LDRNKDIVITLLELGANVNARDYCDKTPIHYAAV-RNNV 388 (682)
T ss_pred HHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHH---hCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHH-cCCH
Confidence 999999 5899999999999999999999999999983 2457889999999999999999999999955554 6678
Q ss_pred HHHHHHHhhhHHHHHH
Q 011578 170 KLRELLLWHSEEQRKR 185 (482)
Q Consensus 170 ~~~~lL~~~~~~~~~~ 185 (482)
+++++|+++|++....
T Consensus 389 ~iv~~Ll~~gad~~~~ 404 (682)
T PHA02876 389 VIINTLLDYGADIEAL 404 (682)
T ss_pred HHHHHHHHCCCCcccc
Confidence 8999999998887654
No 78
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.89 E-value=2.7e-23 Score=224.93 Aligned_cols=166 Identities=17% Similarity=0.274 Sum_probs=148.5
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+....++||.||..|+.+.++.++ +.+.++|..|.. |.||||+||..|+.+++++|++ .|+++|.+|.+|+|
T Consensus 520 ~~~~~~~~~L~~Aa~~g~~~~l~~Ll-~~G~d~n~~d~~-G~TpLh~Aa~~g~~~~v~~Ll~----~gadin~~d~~G~T 593 (823)
T PLN03192 520 HDDPNMASNLLTVASTGNAALLEELL-KAKLDPDIGDSK-GRTPLHIAASKGYEDCVLVLLK----HACNVHIRDANGNT 593 (823)
T ss_pred cCCccchhHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCC-CCCHHHHHHHcChHHHHHHHHh----cCCCCCCcCCCCCC
Confidence 44456789999999999999999998 557889999886 9999999999999999999999 57889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.+++++|++.++..+. ..|.+|||+|+ ..|+.+++++|+++|+|+|.+|.+|+||||+ |+..+
T Consensus 594 pL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa----~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~-A~~~g 666 (823)
T PLN03192 594 ALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAA----KRNDLTAMKELLKQGLNVDSEDHQGATALQV-AMAED 666 (823)
T ss_pred HHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHH----HhCCHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHCC
Confidence 99999999999999999998876653 46789999999 8999999999999999999999999999955 55577
Q ss_pred ChHHHHHHHhhhHHHHHHh
Q 011578 168 SAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 168 ~~~~~~lL~~~~~~~~~~~ 186 (482)
+.+++++|+++|++.+...
T Consensus 667 ~~~iv~~Ll~~GAdv~~~~ 685 (823)
T PLN03192 667 HVDMVRLLIMNGADVDKAN 685 (823)
T ss_pred cHHHHHHHHHcCCCCCCCC
Confidence 8899999999999876554
No 79
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.89 E-value=6.1e-23 Score=174.36 Aligned_cols=157 Identities=23% Similarity=0.278 Sum_probs=131.7
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChH
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tp 88 (482)
..-.+++|+.+++.+-+++.+..+. ...+|..|.. |.|||.||+.+|+.++|++||+ .|++++...++..|+
T Consensus 125 vs~~p~s~~slsVhql~L~~~~~~~---~n~VN~~De~-GfTpLiWAaa~G~i~vV~fLL~----~GAdp~~lgk~resA 196 (296)
T KOG0502|consen 125 VSLMPWSPLSLSVHQLHLDVVDLLV---NNKVNACDEF-GFTPLIWAAAKGHIPVVQFLLN----SGADPDALGKYRESA 196 (296)
T ss_pred cccccCChhhHHHHHHHHHHHHHHh---hccccCcccc-CchHhHHHHhcCchHHHHHHHH----cCCChhhhhhhhhhh
Confidence 3445788899999888887776544 3557888876 9999999999999999999999 688888888889999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCC
Q 011578 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168 (482)
Q Consensus 89 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~ 168 (482)
|++|+..|..++|++|+.++.|+|..|.+|-|||-+|+ +.||.+||+.|++.|||++..+..|+++++.|.+ .|.
T Consensus 197 LsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAv----rgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAVa-lGy 271 (296)
T KOG0502|consen 197 LSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAV----RGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVA-LGY 271 (296)
T ss_pred HhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeee----cCChHHHHHHHHhcCCCcccccccCCcHHHHHHH-hhh
Confidence 99999999999999999999999999999999999999 8999999999999999999999999999955554 445
Q ss_pred hHHHHHHHhh
Q 011578 169 AKLRELLLWH 178 (482)
Q Consensus 169 ~~~~~lL~~~ 178 (482)
..+..++.++
T Consensus 272 r~Vqqvie~h 281 (296)
T KOG0502|consen 272 RIVQQVIEKH 281 (296)
T ss_pred HHHHHHHHHH
Confidence 5555444433
No 80
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.89 E-value=7.2e-23 Score=178.29 Aligned_cols=139 Identities=20% Similarity=0.272 Sum_probs=120.8
Q ss_pred CCCCchHhHHHHHcCCHHHHHHH---HhhCCCCccCCCCCCCChHHHHHHhCCcHHH---HHHHHcCCCCCCcccccCc-
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRL---LRENPSLLNERNPVMAQTPLHVSAGYNKAEI---VKSLLEWPGNDKVELEAQN- 82 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~l---l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~---v~~Ll~~~~~~~~~~~~~~- 82 (482)
...+.++||.||+.|+.+.+..+ |...+..++..+.. |+||||+|+..|+.++ +++|++ .|+++|.++
T Consensus 17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~-g~t~Lh~Aa~~g~~~~~~~i~~Ll~----~Gadin~~d~ 91 (166)
T PHA02743 17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHH-GRQCTHMVAWYDRANAVMKIELLVN----MGADINAREL 91 (166)
T ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCC-CCcHHHHHHHhCccCHHHHHHHHHH----cCCCCCCCCC
Confidence 45677899999999999655543 33567778888876 9999999999988654 789998 578899998
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHh-CCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCC
Q 011578 83 MYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKT 157 (482)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~t 157 (482)
..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+ ..++.+++++|+++|++++.++..|.+
T Consensus 92 ~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~----~~~~~~iv~~Ll~~ga~~~~~~~~~~~ 163 (166)
T PHA02743 92 GTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAY----KMRDRRMMEILRANGAVCDDPLSIGLS 163 (166)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence 589999999999999999999995 89999999999999999999 888999999999999999999887754
No 81
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.89 E-value=1.5e-22 Score=185.51 Aligned_cols=223 Identities=20% Similarity=0.271 Sum_probs=161.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
+.+++.+|++.+..+ ...+..+ +.....++++||||||||||++||.|++.... .+-.|++++
T Consensus 135 ktL~dyvGQ~hlv~q-~gllrs~------------ieq~~ipSmIlWGppG~GKTtlArlia~tsk~----~SyrfvelS 197 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQ-DGLLRSL------------IEQNRIPSMILWGPPGTGKTTLARLIASTSKK----HSYRFVELS 197 (554)
T ss_pred chHHHhcchhhhcCc-chHHHHH------------HHcCCCCceEEecCCCCchHHHHHHHHhhcCC----CceEEEEEe
Confidence 567888888877555 2221111 12346789999999999999999999985543 223577777
Q ss_pred cccccccccccchhhHHHHHHhcC--------CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE--------GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~--------~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
+..- ....++++|++++ ..|||||||+++...+| +.||..++.|.+++|+|||.
T Consensus 198 At~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-----------D~fLP~VE~G~I~lIGATTE 259 (554)
T KOG2028|consen 198 ATNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-----------DTFLPHVENGDITLIGATTE 259 (554)
T ss_pred cccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh-----------hcccceeccCceEEEecccC
Confidence 6542 2346788888764 38999999999999888 99999999999999999999
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccc-ccccc-ccCcccHHHHHHHHHHHhhHhhcccc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSL-LYGFK-LHSSCSMDAIAALIEKETTEKQRREM 432 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~ 432 (482)
|+...+ +.+|++|+ .+|.+.++..++...||.+-+....+... ..++. ....++...++.++... .|
T Consensus 260 NPSFql---n~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~ls-------dG 328 (554)
T KOG2028|consen 260 NPSFQL---NAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLS-------DG 328 (554)
T ss_pred CCccch---hHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhc-------Cc
Confidence 998777 88899999 89999999999999999987664432111 11221 12246777777777654 56
Q ss_pred CcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHH
Q 011578 433 NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 476 (482)
Q Consensus 433 ~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~ 476 (482)
+.|..-|.++.+......|- .......++.+|++++|+.
T Consensus 329 DaR~aLN~Lems~~m~~tr~-----g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 329 DARAALNALEMSLSMFCTRS-----GQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred hHHHHHHHHHHHHHHHHhhc-----CCcccceecHHHHHHHHhh
Confidence 67777788877744332221 1124467999999999875
No 82
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.88 E-value=7.5e-23 Score=186.27 Aligned_cols=160 Identities=24% Similarity=0.317 Sum_probs=144.8
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhC-----CcHHHHHHHHcCCCCCCcccccCc-
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGY-----NKAEIVKSLLEWPGNDKVELEAQN- 82 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~~- 82 (482)
.+++|+|+||+++..+|.++|+.||..+.++++..+.. |+||+++|+.. .+..+|..|... .++|++-
T Consensus 264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrA-GYtpiMLaALA~lk~~~d~~vV~~LF~m-----gnVNaKAs 337 (452)
T KOG0514|consen 264 ADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRA-GYTPVMLAALAKLKQPADRTVVERLFKM-----GDVNAKAS 337 (452)
T ss_pred hcCCCCeeeeeeecccchHHHHHHhccCcccccccccc-cccHHHHHHHHhhcchhhHHHHHHHHhc-----cCcchhhh
Confidence 46789999999999999999999999999999999987 99999999854 467899999874 4677664
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhC-CCCccccCCCCCChhhh
Q 011578 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-NADCSAKDNEGKTPLDH 161 (482)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpl~~ 161 (482)
..|+|+|++|+.+|+.++|+.||.+|||+|.+|.+|-|+|++|+ .+||.+++++||.. ++|+...|.+|-|+| .
T Consensus 338 Q~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~----EHGhkEivklLLA~p~cd~sLtD~DgSTAl-~ 412 (452)
T KOG0514|consen 338 QHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAA----EHGHKEIVKLLLAVPSCDISLTDVDGSTAL-S 412 (452)
T ss_pred hhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhh----hhChHHHHHHHhccCcccceeecCCCchhh-h
Confidence 67999999999999999999999999999999999999999999 99999999999965 899999999999999 7
Q ss_pred hhcCCCChHHHHHHHhhh
Q 011578 162 LSNGPGSAKLRELLLWHS 179 (482)
Q Consensus 162 ~a~~~~~~~~~~lL~~~~ 179 (482)
.|...|+.+|..+|-.+.
T Consensus 413 IAleagh~eIa~mlYa~~ 430 (452)
T KOG0514|consen 413 IALEAGHREIAVMLYAHM 430 (452)
T ss_pred hHHhcCchHHHHHHHHHH
Confidence 778888999888776543
No 83
>PHA02741 hypothetical protein; Provisional
Probab=99.87 E-value=2.8e-22 Score=175.46 Aligned_cols=134 Identities=21% Similarity=0.229 Sum_probs=113.8
Q ss_pred CCCCCCCChHHHHHHhCCcHHHHHHHHcCC--CCCCcccccCcCCCChHHHHHHHcCC----HHHHHHHHhCCCCccccc
Q 011578 42 ERNPVMAQTPLHVSAGYNKAEIVKSLLEWP--GNDKVELEAQNMYGETPLHMAAKNGC----NEAAKLLLAHGAFIEAKA 115 (482)
Q Consensus 42 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~~~~g~tpLh~A~~~g~----~~~v~~Ll~~ga~~~~~d 115 (482)
..+.. |.||||+|+..|+.++++.|+... ...+++++.+|..|+||||+|+..|+ .+++++|+++|++++.++
T Consensus 16 ~~~~~-g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~ 94 (169)
T PHA02741 16 EKNSE-GENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE 94 (169)
T ss_pred ccccC-CCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence 34444 999999999999999999986531 12467899999999999999999998 588999999999999998
Q ss_pred c-CCCcceeeehhhccCCChHHHHHHHhh-CCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHH
Q 011578 116 N-NGMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 181 (482)
Q Consensus 116 ~-~g~tpLh~A~~~~~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~ 181 (482)
. +|+||||+|+ ..++.+++++|++ .|++++.+|.+|+||||+ |...+..+++++|.++++.
T Consensus 95 ~~~g~TpLh~A~----~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~-A~~~~~~~iv~~L~~~~~~ 157 (169)
T PHA02741 95 MLEGDTALHLAA----HRRDHDLAEWLCCQPGIDLHFCNADNKSPFEL-AIDNEDVAMMQILREIVAT 157 (169)
T ss_pred cCCCCCHHHHHH----HcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHH-HHHCCCHHHHHHHHHHHHH
Confidence 5 8999999999 8889999999997 599999999999999944 5556677888898877654
No 84
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.87 E-value=2.4e-22 Score=200.29 Aligned_cols=145 Identities=30% Similarity=0.477 Sum_probs=133.0
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..++.|.||||+||+.|+.+.|..|| ..|.+++.++.+ +.||||.||.+|+.++|+-||+. ......|..|-.|.|
T Consensus 268 ~~d~dg~tpLH~a~r~G~~~svd~Ll-~~Ga~I~~kn~d-~~spLH~AA~yg~~ntv~rLL~~--~~~rllne~D~~g~t 343 (929)
T KOG0510|consen 268 DEDNDGCTPLHYAARQGGPESVDNLL-GFGASINSKNKD-EESPLHFAAIYGRINTVERLLQE--SDTRLLNESDLHGMT 343 (929)
T ss_pred cccccCCchHHHHHHcCChhHHHHHH-HcCCcccccCCC-CCCchHHHHHcccHHHHHHHHhC--cCccccccccccCCC
Confidence 45788999999999999999999888 557778888876 99999999999999999999982 145678899999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCcc---ccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhh
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIE---AKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~---~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~ 160 (482)
|||+|+++||..++++|++.||+.. ..|.+|.||||.|+ ..|+..+|++|+.+||++..+|+.|.|+++
T Consensus 344 pLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa----~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~ 415 (929)
T KOG0510|consen 344 PLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAA----KYGNTSAVQKLISHGADIGVKNKKGKSAFD 415 (929)
T ss_pred chhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHH----HhccHHHHHHHHHcCCceeecccccccccc
Confidence 9999999999999999999999877 56999999999999 788999999999999999999999999997
No 85
>PHA02741 hypothetical protein; Provisional
Probab=99.87 E-value=8e-22 Score=172.53 Aligned_cols=132 Identities=27% Similarity=0.355 Sum_probs=117.7
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhh-----CCCCccCCCCCCCChHHHHHHhCCc----HHHHHHHHcCCCCCCccc
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRE-----NPSLLNERNPVMAQTPLHVSAGYNK----AEIVKSLLEWPGNDKVEL 78 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~-----~~~~~~~~~~~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~ 78 (482)
.++..|.||||+||..|+.+.++.++.. .+.+++..+.. |+||||+|+..|+ .+++++|++ .++++
T Consensus 16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~-g~T~Lh~A~~~g~~~~~~~ii~~Ll~----~gadi 90 (169)
T PHA02741 16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDA-GQMCIHIAAEKHEAQLAAEIIDHLIE----LGADI 90 (169)
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCC-CCcHHHHHHHcCChHHHHHHHHHHHH----cCCCC
Confidence 4567899999999999999999988642 25678888886 9999999999999 589999999 57889
Q ss_pred ccCcC-CCChHHHHHHHcCCHHHHHHHHh-CCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCc
Q 011578 79 EAQNM-YGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADC 148 (482)
Q Consensus 79 ~~~~~-~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~ 148 (482)
+.++. .|+||||+|+..++.+++++|+. .|++++..|.+|+||||+|+ ..++.+++++|+++++..
T Consensus 91 n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~----~~~~~~iv~~L~~~~~~~ 158 (169)
T PHA02741 91 NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAI----DNEDVAMMQILREIVATS 158 (169)
T ss_pred CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHH----HCCCHHHHHHHHHHHHHh
Confidence 99885 89999999999999999999997 59999999999999999999 888999999999887653
No 86
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.86 E-value=2e-22 Score=171.29 Aligned_cols=166 Identities=24% Similarity=0.240 Sum_probs=150.8
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
....+.|++++|.++-.|+...+...| .++...|..+.- +++|+.|++...+.+.+-.+.+ ..+|..|..|.
T Consensus 90 ~~t~p~g~~~~~v~ap~~s~~k~sttl-tN~~rgnevs~~-p~s~~slsVhql~L~~~~~~~~------n~VN~~De~Gf 161 (296)
T KOG0502|consen 90 DETDPEGWSALLVAAPCGSVDKVSTTL-TNGARGNEVSLM-PWSPLSLSVHQLHLDVVDLLVN------NKVNACDEFGF 161 (296)
T ss_pred CCCCchhhhhhhhcCCCCCcceeeeee-cccccCCccccc-cCChhhHHHHHHHHHHHHHHhh------ccccCccccCc
Confidence 344566999999999999999998888 556677887775 9999999999999999988876 45899999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 166 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~ 166 (482)
|||.||+.+|++.+|++|++.|||++...++..++|.+|+ +.|..++|++|+.++.|+|..|.+|-||| .+|.++
T Consensus 162 TpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt----~ggytdiV~lLL~r~vdVNvyDwNGgTpL-lyAvrg 236 (296)
T KOG0502|consen 162 TPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLAT----RGGYTDIVELLLTREVDVNVYDWNGGTPL-LYAVRG 236 (296)
T ss_pred hHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHh----cCChHHHHHHHHhcCCCcceeccCCCcee-eeeecC
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999999 888889
Q ss_pred CChHHHHHHHhhhHHHHHH
Q 011578 167 GSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 167 ~~~~~~~lL~~~~~~~~~~ 185 (482)
++..+++.|+..|++...-
T Consensus 237 nhvkcve~Ll~sGAd~t~e 255 (296)
T KOG0502|consen 237 NHVKCVESLLNSGADVTQE 255 (296)
T ss_pred ChHHHHHHHHhcCCCcccc
Confidence 9999999999999986543
No 87
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.86 E-value=9.7e-23 Score=179.93 Aligned_cols=155 Identities=26% Similarity=0.334 Sum_probs=132.2
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCC
Q 011578 18 HGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC 97 (482)
Q Consensus 18 ~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~ 97 (482)
+--|+.|+.-.|+..|.....+.|..|+. |.+||||||..||..+|+.|+. .|+.+|..|....||||+|+.+||
T Consensus 5 f~wcregna~qvrlwld~tehdln~gddh-gfsplhwaakegh~aivemll~----rgarvn~tnmgddtplhlaaahgh 79 (448)
T KOG0195|consen 5 FGWCREGNAFQVRLWLDDTEHDLNVGDDH-GFSPLHWAAKEGHVAIVEMLLS----RGARVNSTNMGDDTPLHLAAAHGH 79 (448)
T ss_pred hhhhhcCCeEEEEEEecCccccccccccc-CcchhhhhhhcccHHHHHHHHh----cccccccccCCCCcchhhhhhccc
Confidence 34467788877887787777888888887 9999999999999999999999 688999999999999999999999
Q ss_pred HHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHh
Q 011578 98 NEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW 177 (482)
Q Consensus 98 ~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~ 177 (482)
.++|+.|++..+|+|+.+..|+||||||| ..|...+++-|+..|+.+++.|++|.||| -.|...-...+.++-.+
T Consensus 80 rdivqkll~~kadvnavnehgntplhyac----fwgydqiaedli~~ga~v~icnk~g~tpl-dkakp~l~~~l~e~aek 154 (448)
T KOG0195|consen 80 RDIVQKLLSRKADVNAVNEHGNTPLHYAC----FWGYDQIAEDLISCGAAVNICNKKGMTPL-DKAKPMLKNTLLEIAEK 154 (448)
T ss_pred HHHHHHHHHHhcccchhhccCCCchhhhh----hhcHHHHHHHHHhccceeeecccCCCCch-hhhchHHHHHHHHHHHH
Confidence 99999999999999999999999999999 55678899999999999999999999999 44443333334444445
Q ss_pred hhHHH
Q 011578 178 HSEEQ 182 (482)
Q Consensus 178 ~~~~~ 182 (482)
+|..+
T Consensus 155 ~gq~~ 159 (448)
T KOG0195|consen 155 HGQSP 159 (448)
T ss_pred hCCCC
Confidence 55443
No 88
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.86 E-value=1.6e-20 Score=167.59 Aligned_cols=172 Identities=22% Similarity=0.282 Sum_probs=133.6
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
.+.|++.+|++.+|+++.-++.+.+. .....-|+||+||||.||||+|..+|++++......++|.++
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~-----------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le- 89 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKK-----------RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE- 89 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHh-----------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc-
Confidence 46789999999999999988766542 234677999999999999999999999998744444444442
Q ss_pred ecccccccccccchhhHHHHHHh-cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC----------------
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---------------- 344 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~-a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------------- 344 (482)
.+ .-+..++.. -++-|||||||+++.+ .+-..|+..|++.
T Consensus 90 K~------------gDlaaiLt~Le~~DVLFIDEIHrl~~-----------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ 146 (332)
T COG2255 90 KP------------GDLAAILTNLEEGDVLFIDEIHRLSP-----------AVEEVLYPAMEDFRLDIIIGKGPAARSIR 146 (332)
T ss_pred Ch------------hhHHHHHhcCCcCCeEEEehhhhcCh-----------hHHHHhhhhhhheeEEEEEccCCccceEe
Confidence 11 223344443 3568999999999998 3447788888862
Q ss_pred ----cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHH
Q 011578 345 ----KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI 420 (482)
Q Consensus 345 ----~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (482)
.+++|+|||...+. ..+|++||..+.++..|+.+|+.+|+.+.... +..++++++..+++
T Consensus 147 ldLppFTLIGATTr~G~l-----t~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~-----------l~i~i~~~~a~eIA 210 (332)
T COG2255 147 LDLPPFTLIGATTRAGML-----TNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI-----------LGIEIDEEAALEIA 210 (332)
T ss_pred ccCCCeeEeeeccccccc-----cchhHHhcCCeeeeecCCHHHHHHHHHHHHHH-----------hCCCCChHHHHHHH
Confidence 36899998887775 67789999999999999999999999987654 34677888888888
Q ss_pred HHHh
Q 011578 421 EKET 424 (482)
Q Consensus 421 ~~~~ 424 (482)
.++.
T Consensus 211 ~rSR 214 (332)
T COG2255 211 RRSR 214 (332)
T ss_pred Hhcc
Confidence 8763
No 89
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=1.4e-21 Score=187.22 Aligned_cols=151 Identities=32% Similarity=0.425 Sum_probs=102.1
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCC-------------
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN------------- 73 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~------------- 73 (482)
...+.+|.|+||.||...+.++|++++ +.+.++|..+.. ||||||.|+..||..++++|+++|++
T Consensus 67 ~~~n~DglTalhq~~id~~~e~v~~l~-e~ga~Vn~~d~e-~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~d 144 (527)
T KOG0505|consen 67 NLCNVDGLTALHQACIDDNLEMVKFLV-ENGANVNAQDNE-GWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYD 144 (527)
T ss_pred cccCCccchhHHHHHhcccHHHHHHHH-HhcCCccccccc-cCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccc
Confidence 445667777777777777777777666 456667777765 77777777777777777777776553
Q ss_pred ------------------------------------------CCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCc
Q 011578 74 ------------------------------------------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI 111 (482)
Q Consensus 74 ------------------------------------------~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 111 (482)
.|...+..+..|.|.||.|+.+|..++.++|+++|.++
T Consensus 145 l~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~ 224 (527)
T KOG0505|consen 145 LAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSV 224 (527)
T ss_pred cccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCc
Confidence 12333333444667777777777777777777777777
Q ss_pred cccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhh
Q 011578 112 EAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 163 (482)
Q Consensus 112 ~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a 163 (482)
+.+|.+||||||.|+ ..|..+++++|+++|++++.....|.||++.+.
T Consensus 225 ~~~D~dgWtPlHAAA----~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~d 272 (527)
T KOG0505|consen 225 NIKDYDGWTPLHAAA----HWGQEDACELLVEHGADMDAKTKMGETPLDVAD 272 (527)
T ss_pred ccccccCCCcccHHH----HhhhHhHHHHHHHhhcccchhhhcCCCCccchh
Confidence 777777777777777 445666777777777777777777777764443
No 90
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.86 E-value=5.9e-22 Score=170.92 Aligned_cols=133 Identities=23% Similarity=0.300 Sum_probs=102.6
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHh----hCCCCccCCCCCCCChHHHHHHhCCcH---HHHHHHHcCCCCCCccccc
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLR----ENPSLLNERNPVMAQTPLHVSAGYNKA---EIVKSLLEWPGNDKVELEA 80 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~----~~~~~~~~~~~~~g~tpLh~A~~~g~~---~~v~~Ll~~~~~~~~~~~~ 80 (482)
..+..|.||||+||..|+...+..... ..+..++..+.. |+||||+|+..|+. +++++|++ .|++++.
T Consensus 12 ~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~-g~t~Lh~a~~~~~~~~~e~v~~Ll~----~gadin~ 86 (154)
T PHA02736 12 EPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRH-GKQCVHIVSNPDKADPQEKLKLLME----WGADING 86 (154)
T ss_pred hcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCC-CCEEEEeecccCchhHHHHHHHHHH----cCCCccc
Confidence 345678999999999998533221111 112223344554 89999999998886 46788888 5778888
Q ss_pred Cc-CCCChHHHHHHHcCCHHHHHHHHh-CCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCcc
Q 011578 81 QN-MYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS 149 (482)
Q Consensus 81 ~~-~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~ 149 (482)
++ ..|+||||+|+..|+.+++++|+. .|++++.+|..|+||||+|+ ..|+.+++++|+++|++++
T Consensus 87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~----~~~~~~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 87 KERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVAC----ERHDAKMMNILRAKGAQCK 153 (154)
T ss_pred cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCC
Confidence 87 489999999999999999999997 48999999999999999999 7888999999999988875
No 91
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.86 E-value=9.6e-22 Score=207.81 Aligned_cols=160 Identities=31% Similarity=0.386 Sum_probs=118.8
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHH
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~ 91 (482)
.|.||||.|+..|+.+.++-+++ .+...+...+. |.|+||.|...+...+++.+++ .|++++.++..|+||||.
T Consensus 473 ~G~T~Lhlaaq~Gh~~~~~llle-~~~~~~~~~~~-~l~~lhla~~~~~v~~~~~l~~----~ga~v~~~~~r~~TpLh~ 546 (1143)
T KOG4177|consen 473 QGFTPLHLAAQEGHTEVVQLLLE-GGANDNLDAKK-GLTPLHLAADEDTVKVAKILLE----HGANVDLRTGRGYTPLHV 546 (1143)
T ss_pred ccCcchhhhhccCCchHHHHhhh-cCCccCccchh-ccchhhhhhhhhhHHHHHHHhh----cCCceehhcccccchHHH
Confidence 34444444444444444443332 22222222222 4444444444444444444444 578899999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHH
Q 011578 92 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKL 171 (482)
Q Consensus 92 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~ 171 (482)
||..|++++|++|+++|+|++.+++.|+||||.|| ..|+.+|+.+|+++|+++|..|.+|.||| +.|...+...+
T Consensus 547 A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa----~~G~~~i~~LLlk~GA~vna~d~~g~TpL-~iA~~lg~~~~ 621 (1143)
T KOG4177|consen 547 AVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAA----QQGHNDIAELLLKHGASVNAADLDGFTPL-HIAVRLGYLSV 621 (1143)
T ss_pred HHhcCCchHHHHhhhCCccccccCCCCCChhhHHH----HcChHHHHHHHHHcCCCCCcccccCcchh-HHHHHhcccch
Confidence 99999999999999999999999999999999999 88999999999999999999999999999 55555677778
Q ss_pred HHHHHhhhHHH
Q 011578 172 RELLLWHSEEQ 182 (482)
Q Consensus 172 ~~lL~~~~~~~ 182 (482)
+++|...++.+
T Consensus 622 ~k~l~~~~~~~ 632 (1143)
T KOG4177|consen 622 VKLLKVVTATP 632 (1143)
T ss_pred hhHHHhccCcc
Confidence 88888777763
No 92
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.86 E-value=6.8e-22 Score=172.16 Aligned_cols=140 Identities=19% Similarity=0.135 Sum_probs=119.4
Q ss_pred CCCccCCCCCCCChHHHHHHhCCcH----HHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHH---HHHHHhCCC
Q 011578 37 PSLLNERNPVMAQTPLHVSAGYNKA----EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA---AKLLLAHGA 109 (482)
Q Consensus 37 ~~~~~~~~~~~g~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~---v~~Ll~~ga 109 (482)
+.+++..+.. +.++||+||..|+. +++++|++ .+.+++.+|..|+||||+|+..|+.+. +++|+++|+
T Consensus 10 ~~~~~~~~~~-~~~~l~~a~~~g~~~~l~~~~~~l~~----~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Ga 84 (166)
T PHA02743 10 NLGAVEIDED-EQNTFLRICRTGNIYELMEVAPFISG----DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGA 84 (166)
T ss_pred chHHhhhccC-CCcHHHHHHHcCCHHHHHHHHHHHhh----cchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCC
Confidence 4455556655 88999999999998 56667777 577889999999999999999988654 899999999
Q ss_pred Cccccc-cCCCcceeeehhhccCCChHHHHHHHhh-CCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 110 FIEAKA-NNGMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 110 ~~~~~d-~~g~tpLh~A~~~~~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
++|.+| ..|+||||+|+ ..++.+++++|++ .|++++.+|..|+||||+++ ..++..++++|+.+|++.+.++
T Consensus 85 din~~d~~~g~TpLh~A~----~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~-~~~~~~iv~~Ll~~ga~~~~~~ 158 (166)
T PHA02743 85 DINARELGTGNTLLHIAA----STKNYELAEWLCRQLGVNLGAINYQHETAYHIAY-KMRDRRMMEILRANGAVCDDPL 158 (166)
T ss_pred CCCCCCCCCCCcHHHHHH----HhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCCCCcc
Confidence 999998 58999999999 8889999999995 89999999999999995554 5667889999999998866554
No 93
>PHA02795 ankyrin-like protein; Provisional
Probab=99.85 E-value=7.3e-21 Score=185.21 Aligned_cols=170 Identities=15% Similarity=0.040 Sum_probs=136.2
Q ss_pred CccccccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCC----CCCChHHHHHHhCCcHHHHHHHHcCCCCCCcc
Q 011578 2 QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNP----VMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE 77 (482)
Q Consensus 2 ~~~~~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~----~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~ 77 (482)
..|+|... ..+.||||.|+..|+.++++.|+.++..+.+..+. ..+.||+|.|+..++.+++++|++ .|++
T Consensus 139 ~~GADIn~-~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs----~GAD 213 (437)
T PHA02795 139 DHGAVIYK-IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIP----YIED 213 (437)
T ss_pred HCCCCCCC-CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHh----CcCC
Confidence 45777655 34589999999999999999999776544443321 237899999999999999999999 5889
Q ss_pred cccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhcc----CCChHHHHHHHhhCCCCccccCC
Q 011578 78 LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSI----RSEDYATVKTLLEYNADCSAKDN 153 (482)
Q Consensus 78 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~----~~~~~~~v~~Ll~~gad~~~~d~ 153 (482)
+|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..+. ..++.+++++|+++|++++..+.
T Consensus 214 IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~ 293 (437)
T PHA02795 214 INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKL 293 (437)
T ss_pred cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhH
Confidence 99999999999999999999999999999999999999999999999994331 12367999999999999987543
Q ss_pred CCCChhhhhhcCCCChHHHHHHHhhhHHH
Q 011578 154 EGKTPLDHLSNGPGSAKLRELLLWHSEEQ 182 (482)
Q Consensus 154 ~g~tpl~~~a~~~~~~~~~~lL~~~~~~~ 182 (482)
|++.. . ....++.+.+..+....
T Consensus 294 ---~~~~~-~--~~n~~~ik~lI~y~~~l 316 (437)
T PHA02795 294 ---AILNN-T--IENHDVIKLCIKYFMMV 316 (437)
T ss_pred ---Hhhhc-c--cchHHHHHHHHHHHHhc
Confidence 33311 1 12567788888777643
No 94
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.85 E-value=7.4e-21 Score=205.98 Aligned_cols=143 Identities=20% Similarity=0.222 Sum_probs=128.3
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.||||.||..|+.++++.|+. .+.++|..+.. |+||||+|+..|+.+++++|++. ++..+ ...+.
T Consensus 552 n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-~gadin~~d~~-G~TpL~~A~~~g~~~iv~~L~~~----~~~~~--~~~~~ 623 (823)
T PLN03192 552 DIGDSKGRTPLHIAASKGYEDCVLVLLK-HACNVHIRDAN-GNTALWNAISAKHHKIFRILYHF----ASISD--PHAAG 623 (823)
T ss_pred CCCCCCCCCHHHHHHHcChHHHHHHHHh-cCCCCCCcCCC-CCCHHHHHHHhCCHHHHHHHHhc----CcccC--cccCc
Confidence 4456789999999999999999998885 57889999886 99999999999999999999984 33322 24577
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCC-CChhhh
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG-KTPLDH 161 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g-~tpl~~ 161 (482)
+|||+|+..|+.+++++|+++|+|+|.+|.+|+||||+|+ ..|+.+++++|+++|+|++..|..| .||++.
T Consensus 624 ~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~----~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l 695 (823)
T PLN03192 624 DLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAM----AEDHVDMVRLLIMNGADVDKANTDDDFSPTEL 695 (823)
T ss_pred hHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHH
Confidence 9999999999999999999999999999999999999999 8999999999999999999999988 888843
No 95
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=4.2e-21 Score=183.98 Aligned_cols=169 Identities=29% Similarity=0.343 Sum_probs=148.2
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHH
Q 011578 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A 92 (482)
..-.+..||..|+.+.|..+|.. +..+|..+.+ |.|+||-+|...+.+||++|++ .+++||..|..||||||.|
T Consensus 40 ~sa~~l~A~~~~d~~ev~~ll~~-ga~~~~~n~D-glTalhq~~id~~~e~v~~l~e----~ga~Vn~~d~e~wtPlhaa 113 (527)
T KOG0505|consen 40 DSAVFLEACSRGDLEEVRKLLNR-GASPNLCNVD-GLTALHQACIDDNLEMVKFLVE----NGANVNAQDNEGWTPLHAA 113 (527)
T ss_pred chHHHHhccccccHHHHHHHhcc-CCCccccCCc-cchhHHHHHhcccHHHHHHHHH----hcCCccccccccCCcchhh
Confidence 34457889999999999999955 5666888876 9999999999999999999999 6889999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCccccc---------------------------------------------------------
Q 011578 93 AKNGCNEAAKLLLAHGAFIEAKA--------------------------------------------------------- 115 (482)
Q Consensus 93 ~~~g~~~~v~~Ll~~ga~~~~~d--------------------------------------------------------- 115 (482)
+..|+..++++|+.+|+++-..|
T Consensus 114 ascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~ 193 (527)
T KOG0505|consen 114 ASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDA 193 (527)
T ss_pred cccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccc
Confidence 99999999999999987433222
Q ss_pred --cCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHhhHhhhh
Q 011578 116 --NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACS 192 (482)
Q Consensus 116 --~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~~~~~~~ 192 (482)
..|.|.||.|+ .+|..++..+|+++|.+++++|.+||||| |+|+.++...++++|..+|++.+.......++
T Consensus 194 ~~~rG~T~lHvAa----a~Gy~e~~~lLl~ag~~~~~~D~dgWtPl-HAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p 267 (527)
T KOG0505|consen 194 RHARGATALHVAA----ANGYTEVAALLLQAGYSVNIKDYDGWTPL-HAAAHWGQEDACELLVEHGADMDAKTKMGETP 267 (527)
T ss_pred cccccchHHHHHH----hhhHHHHHHHHHHhccCcccccccCCCcc-cHHHHhhhHhHHHHHHHhhcccchhhhcCCCC
Confidence 26899999999 89999999999999999999999999999 88888999999999999999877666544443
No 96
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.84 E-value=3.4e-20 Score=173.80 Aligned_cols=152 Identities=16% Similarity=0.149 Sum_probs=125.2
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccCCC---CCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC-cCCCCh
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERN---PVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMYGET 87 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~---~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t 87 (482)
...++||.|+..|+.++++.||+ .|.++|..+ +..|.||||+|+..|+.+++++|++ .|+++|.+ +..|.|
T Consensus 32 ~~~~lL~~A~~~~~~eivk~LL~-~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~----~GADVN~~~~~~g~T 106 (300)
T PHA02884 32 CIANILYSSIKFHYTDIIDAILK-LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIR----YGADVNRYAEEAKIT 106 (300)
T ss_pred CCCHHHHHHHHcCCHHHHHHHHH-CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCcCcccCCCCCC
Confidence 33456778888899999999884 567788764 2349999999999999999999999 57889986 468999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..++..++..+. |.. .+..+.+|++.+ .
T Consensus 107 pLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~----~~~~~~~~~~~~--~~~---~~~~~~~~~~~~----~ 173 (300)
T PHA02884 107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELAL----MICNNFLAFMIC--DNE---ISNFYKHPKKIL----I 173 (300)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HhCChhHHHHhc--CCc---ccccccChhhhh----c
Confidence 999999999999999999999999999999999999999 666777775554 332 466678888443 2
Q ss_pred ChHHHHHHHhhhHH
Q 011578 168 SAKLRELLLWHSEE 181 (482)
Q Consensus 168 ~~~~~~lL~~~~~~ 181 (482)
..++.++|..++.-
T Consensus 174 n~ei~~~Lish~vl 187 (300)
T PHA02884 174 NFDILKILVSHFIL 187 (300)
T ss_pred cHHHHHHHHHHHHH
Confidence 57888999988874
No 97
>PHA02730 ankyrin-like protein; Provisional
Probab=99.83 E-value=2.1e-20 Score=190.56 Aligned_cols=172 Identities=17% Similarity=0.088 Sum_probs=135.9
Q ss_pred ccCCCCCchHhHHHHHcC---CHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCC--cHHHHHHHHcCCCCCCcccccC
Q 011578 7 RRSRSAKPATIHGCAQSG---DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQ 81 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~ 81 (482)
..++..|.||||+|+..| +.++|+.|| +.|++++..+.. |+||||+|+..+ +.++|++|++.|+ +++++..
T Consensus 35 ~~kd~~G~TaLh~A~~~~~~~~~eivklLL-s~GAdin~kD~~-G~TPLh~Aa~~~~~~~eIv~~Ll~~~~--~~~~~~~ 110 (672)
T PHA02730 35 KHIDRRGNNALHCYVSNKCDTDIKIVRLLL-SRGVERLCRNNE-GLTPLGVYSKRKYVKSQIVHLLISSYS--NASNELT 110 (672)
T ss_pred hhcCCCCCcHHHHHHHcCCcCcHHHHHHHH-hCCCCCcccCCC-CCChHHHHHHcCCCcHHHHHHHHhcCC--CCCcccc
Confidence 456678999999999997 589999888 568889999886 999999999976 7999999999643 4566777
Q ss_pred cCCCChHHHHHHH--cCCHHHHHHHHh-CCCCcccccc-----CCCcceeeehhhccCCChHHHHHHHhhCCCCcc----
Q 011578 82 NMYGETPLHMAAK--NGCNEAAKLLLA-HGAFIEAKAN-----NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS---- 149 (482)
Q Consensus 82 ~~~g~tpLh~A~~--~g~~~~v~~Ll~-~ga~~~~~d~-----~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~---- 149 (482)
+.-+.+|||.++. +++.++|++|+. .+++++...+ .|.+|+++++ ..+++++|++|+++||+++
T Consensus 111 ~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~----~~~~~eIvklLi~~g~~v~g~~~ 186 (672)
T PHA02730 111 SNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTT----PNPRPEVLLWLLKSECYSTGYVF 186 (672)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhc----CCCchHHHHHHHHcCCccccccc
Confidence 7778888888887 788889999996 6678776643 6889999988 8888999999999999885
Q ss_pred ---ccCCCCCChhhh-h--h---cCCCChHHHHHHHhhhHHHHHHh
Q 011578 150 ---AKDNEGKTPLDH-L--S---NGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 150 ---~~d~~g~tpl~~-~--a---~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
..+..+.+|+-| . . ......+++++|+.+|++.+.+.
T Consensus 187 ~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd 232 (672)
T PHA02730 187 RSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRD 232 (672)
T ss_pred ccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCC
Confidence 234445444422 1 1 35567888899999988876554
No 98
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.83 E-value=2.5e-21 Score=167.05 Aligned_cols=133 Identities=22% Similarity=0.212 Sum_probs=106.9
Q ss_pred cCCCCCCCChHHHHHHhCCcHHHHHHHHcCCC---CCCcccccCcCCCChHHHHHHHcCCH---HHHHHHHhCCCCcccc
Q 011578 41 NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPG---NDKVELEAQNMYGETPLHMAAKNGCN---EAAKLLLAHGAFIEAK 114 (482)
Q Consensus 41 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~---~~~~~~~~~~~~g~tpLh~A~~~g~~---~~v~~Ll~~ga~~~~~ 114 (482)
+..+.. |.||||+||..|+. +.+++..+. ..+..++.+|..|+||||+|+..|+. +++++|++.|++++.+
T Consensus 11 ~~~d~~-g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~ 87 (154)
T PHA02736 11 SEPDIE-GENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK 87 (154)
T ss_pred HhcCCC-CCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence 445554 99999999999983 333322110 01223456789999999999999987 4689999999999999
Q ss_pred c-cCCCcceeeehhhccCCChHHHHHHHhh-CCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHH
Q 011578 115 A-NNGMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 181 (482)
Q Consensus 115 d-~~g~tpLh~A~~~~~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~ 181 (482)
| ..|+||||+|+ ..++.+++++|++ .|++++.+|..|+||||+|+ ..++.+++++|+.+|++
T Consensus 88 ~~~~g~T~Lh~A~----~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~-~~~~~~i~~~Ll~~ga~ 151 (154)
T PHA02736 88 ERVFGNTPLHIAV----YTQNYELATWLCNQPGVNMEILNYAFKTPYYVAC-ERHDAKMMNILRAKGAQ 151 (154)
T ss_pred CCCCCCcHHHHHH----HhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHH-HcCCHHHHHHHHHcCCC
Confidence 8 59999999999 8889999999997 59999999999999995555 56788899999988865
No 99
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.83 E-value=1.1e-19 Score=193.49 Aligned_cols=242 Identities=18% Similarity=0.235 Sum_probs=169.9
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCC---CCCCCeEE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTE 280 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~---~~~~~~~~ 280 (482)
.++.++|.+...+++.+.+. .....+++|+||||||||++|+.+|+.+..... .....++.
T Consensus 180 ~l~~~igr~~ei~~~~~~L~----------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLC----------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred CCCcccCcHHHHHHHHHHHh----------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 46678999988887665421 224568999999999999999999998853221 22456888
Q ss_pred eeccccc--ccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCch
Q 011578 281 VQRTDLV--GEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 355 (482)
Q Consensus 281 ~~~~~~~--~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~ 355 (482)
++.+.+. .+|.|+.+..++++|+.+ .++||||||+|.+.+.+...++ ...+.+.|...+++|.+.+|++||..
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~--~~~~~~~L~~~l~~g~i~~IgaTt~~ 321 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG--SMDASNLLKPALSSGKLRCIGSTTYE 321 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc--cHHHHHHHHHHHhCCCeEEEEecCHH
Confidence 8887776 478999999999999865 3589999999999876542222 12455778888999999999999997
Q ss_pred hHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcc
Q 011578 356 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 435 (482)
Q Consensus 356 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 435 (482)
.+...++.++++.+|| ..|+++.|+.+++.+|++........ .....++++++..++....+.-..+. -..
T Consensus 322 e~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~e~-------~~~v~i~~~al~~~~~ls~ryi~~r~-~P~ 392 (731)
T TIGR02639 322 EYKNHFEKDRALSRRF-QKIDVGEPSIEETVKILKGLKEKYEE-------FHHVKYSDEALEAAVELSARYINDRF-LPD 392 (731)
T ss_pred HHHHHhhhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHHHHHHh-------ccCcccCHHHHHHHHHhhhccccccc-CCH
Confidence 7777777799999999 58999999999999999987765331 12245778888777664431000000 011
Q ss_pred hhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 436 LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 436 ~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
-.-.+++.|+.....+-. ......|+.+|+.+++..+
T Consensus 393 kai~lld~a~a~~~~~~~-----~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 393 KAIDVIDEAGASFRLRPK-----AKKKANVSVKDIENVVAKM 429 (731)
T ss_pred HHHHHHHHhhhhhhcCcc-----cccccccCHHHHHHHHHHH
Confidence 223455666554322111 0123458888888888776
No 100
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.83 E-value=2.1e-19 Score=192.30 Aligned_cols=240 Identities=18% Similarity=0.257 Sum_probs=167.0
Q ss_pred HHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC
Q 011578 199 DELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 277 (482)
Q Consensus 199 ~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~ 277 (482)
......++ ++.|++.+++.+.+++.... .+ +.....+++|+||||||||++|++||+.++. +
T Consensus 312 ~~~~~~l~~~~~G~~~~k~~i~~~~~~~~---~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~-------~ 374 (775)
T TIGR00763 312 KRAKEILDEDHYGLKKVKERILEYLAVQK---LR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNR-------K 374 (775)
T ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHH---hh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcC-------C
Confidence 34445555 48999999999998754322 11 1123347999999999999999999999876 6
Q ss_pred eEEeecccc---------cccccccchhhHHHHHHhcC--CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---
Q 011578 278 VTEVQRTDL---------VGEFVGHTGPKTRRRIKEAE--GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--- 343 (482)
Q Consensus 278 ~~~~~~~~~---------~~~~~g~~~~~~~~~~~~a~--~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--- 343 (482)
|+.++.+.. ...|+|.....+.+.|..+. ..||||||||++.+..+.+ ..+.|++.||.
T Consensus 375 ~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~-------~~~aLl~~ld~~~~ 447 (775)
T TIGR00763 375 FVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGD-------PASALLEVLDPEQN 447 (775)
T ss_pred eEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCC-------HHHHHHHhcCHHhc
Confidence 666654332 23578888888888887653 4799999999999754422 12556665542
Q ss_pred --------------CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccc-ccc
Q 011578 344 --------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-KLH 408 (482)
Q Consensus 344 --------------~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~-~~~ 408 (482)
+.+++|+|++. ...+ +|+|++|| .+|+|+.|+.+++.+|++.++..... ...++ ...
T Consensus 448 ~~f~d~~~~~~~d~s~v~~I~TtN~--~~~i---~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~--~~~~l~~~~ 519 (775)
T TIGR00763 448 NAFSDHYLDVPFDLSKVIFIATANS--IDTI---PRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKAL--EDHGLKPDE 519 (775)
T ss_pred CccccccCCceeccCCEEEEEecCC--chhC---CHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHH--HHcCCCcce
Confidence 35677776543 3333 89999999 58999999999999999988753221 01122 123
Q ss_pred CcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcC-CCCCh--hhhhcccHHHHHHHHH
Q 011578 409 SSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSF-DCLDT--DELRTITLEDLEAGLK 475 (482)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~-~~~~~--~~~~~i~~~d~~~al~ 475 (482)
..++++++..+++.++ +..++|.|+..++..++..+.++.. +.... .....|+.+++++.+.
T Consensus 520 ~~~~~~~l~~i~~~~~-----~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 520 LKITDEALLLLIKYYT-----REAGVRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred EEECHHHHHHHHHhcC-----hhcCChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 4689999999999765 3566899999999999988777652 22111 1125788888877653
No 101
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.83 E-value=5.2e-21 Score=202.28 Aligned_cols=174 Identities=33% Similarity=0.402 Sum_probs=152.5
Q ss_pred ccCCCCCchHhHHHHHcC-CHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCC
Q 011578 7 RRSRSAKPATIHGCAQSG-DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG 85 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g-~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g 85 (482)
......|.|++|.|+..| ..+... ++.+.+.++|..... |.||||+|+..|+.+++..|++ .++..+...+.+
T Consensus 434 ~~~~~lG~T~lhvaa~~g~~~~~~~-~l~~~g~~~n~~s~~-G~T~Lhlaaq~Gh~~~~~llle----~~~~~~~~~~~~ 507 (1143)
T KOG4177|consen 434 NAKAKLGYTPLHVAAKKGRYLQIAR-LLLQYGADPNAVSKQ-GFTPLHLAAQEGHTEVVQLLLE----GGANDNLDAKKG 507 (1143)
T ss_pred hhHhhcCCChhhhhhhcccHhhhhh-hHhhcCCCcchhccc-cCcchhhhhccCCchHHHHhhh----cCCccCccchhc
Confidence 344567899999999999 555555 444778889999887 9999999999999999999998 567778888889
Q ss_pred ChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcC
Q 011578 86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 165 (482)
Q Consensus 86 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~ 165 (482)
-|+||.|...+...+++.++++|++++.++.+|.||||.|+ ..|+.++|++|+++|+|++.+++.|+||||.||..
T Consensus 508 l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~----~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~ 583 (1143)
T KOG4177|consen 508 LTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAV----HYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQ 583 (1143)
T ss_pred cchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHH----hcCCchHHHHhhhCCccccccCCCCCChhhHHHHc
Confidence 99999999999999999999999999999999999999999 88999999999999999999999999999666665
Q ss_pred CCChHHHHHHHhhhHHHHHHhhHhhh
Q 011578 166 PGSAKLRELLLWHSEEQRKRRALEAC 191 (482)
Q Consensus 166 ~~~~~~~~lL~~~~~~~~~~~~~~~~ 191 (482)
++.+++.+|.++|++++..+....+
T Consensus 584 -G~~~i~~LLlk~GA~vna~d~~g~T 608 (1143)
T KOG4177|consen 584 -GHNDIAELLLKHGASVNAADLDGFT 608 (1143)
T ss_pred -ChHHHHHHHHHcCCCCCcccccCcc
Confidence 5999999999999988877654433
No 102
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.83 E-value=2.6e-20 Score=152.70 Aligned_cols=120 Identities=33% Similarity=0.358 Sum_probs=109.4
Q ss_pred HHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhcc
Q 011578 51 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSI 130 (482)
Q Consensus 51 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~ 130 (482)
-+.||+..+...-|+.||+. ....+|.+|.+|+||||.|+.+|+.++|+.|+..||+++++...||||||-||
T Consensus 66 l~lwaae~nrl~eV~~lL~e---~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAc---- 138 (228)
T KOG0512|consen 66 LLLWAAEKNRLTEVQRLLSE---KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSAC---- 138 (228)
T ss_pred HHHHHHhhccHHHHHHHHHh---ccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhh----
Confidence 46899999999999999985 44568999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHh
Q 011578 131 RSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW 177 (482)
Q Consensus 131 ~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~ 177 (482)
..++.+++.+||++|+|+|+.....+||||.+|...+......+|+.
T Consensus 139 kWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~ 185 (228)
T KOG0512|consen 139 KWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLH 185 (228)
T ss_pred cccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhh
Confidence 77899999999999999999999999999888877777776666663
No 103
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.8e-19 Score=179.62 Aligned_cols=237 Identities=16% Similarity=0.252 Sum_probs=173.2
Q ss_pred HHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCe
Q 011578 200 ELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV 278 (482)
Q Consensus 200 ~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~ 278 (482)
....-++ +..|++.+|++|.+++.... ... ....+-++|.||||+|||++++.||+.+++ .|
T Consensus 316 ~a~~iLd~dHYGLekVKeRIlEyLAV~~---l~~-------~~kGpILcLVGPPGVGKTSLgkSIA~al~R-------kf 378 (782)
T COG0466 316 KAEKILDKDHYGLEKVKERILEYLAVQK---LTK-------KLKGPILCLVGPPGVGKTSLGKSIAKALGR-------KF 378 (782)
T ss_pred HHHHHhcccccCchhHHHHHHHHHHHHH---Hhc-------cCCCcEEEEECCCCCCchhHHHHHHHHhCC-------CE
Confidence 3344444 57999999999999865432 211 123345889999999999999999999988 78
Q ss_pred EEeeccccc---------ccccccchhhHHHHHHhcC--CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----
Q 011578 279 TEVQRTDLV---------GEFVGHTGPKTRRRIKEAE--GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---- 343 (482)
Q Consensus 279 ~~~~~~~~~---------~~~~g~~~~~~~~~~~~a~--~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---- 343 (482)
+.++...+. ..|+|....++-+.+.++. .-|++|||||++..+.+++.. ++||+.+|.
T Consensus 379 vR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPa-------SALLEVLDPEQN~ 451 (782)
T COG0466 379 VRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPA-------SALLEVLDPEQNN 451 (782)
T ss_pred EEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChH-------HHHHhhcCHhhcC
Confidence 877765432 2399999999988888875 489999999999987665443 567777763
Q ss_pred -------------CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccc-cccC
Q 011578 344 -------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-KLHS 409 (482)
Q Consensus 344 -------------~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~-~~~~ 409 (482)
.+|++|+| .|.++.+ ..+|++|+ ++|+++.|+.+|..+|.+.||-.... ...|+ .-..
T Consensus 452 ~F~DhYLev~yDLS~VmFiaT--ANsl~tI---P~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiPk~~--~~~gL~~~el 523 (782)
T COG0466 452 TFSDHYLEVPYDLSKVMFIAT--ANSLDTI---PAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIPKQL--KEHGLKKGEL 523 (782)
T ss_pred chhhccccCccchhheEEEee--cCccccC---ChHHhcce-eeeeecCCChHHHHHHHHHhcchHHH--HHcCCCccce
Confidence 45677776 3434433 88899999 99999999999999999998865432 23355 3456
Q ss_pred cccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 410 SCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
.++++++..++++|++ ....|.++..+...+|+.+..+..+.... ...++..++++.|.
T Consensus 524 ~i~d~ai~~iI~~YTR-----EAGVR~LeR~i~ki~RK~~~~i~~~~~k~--~~~i~~~~l~~yLG 582 (782)
T COG0466 524 TITDEAIKDIIRYYTR-----EAGVRNLEREIAKICRKAAKKILLKKEKS--IVKIDEKNLKKYLG 582 (782)
T ss_pred eecHHHHHHHHHHHhH-----hhhhhHHHHHHHHHHHHHHHHHHhcCccc--ceeeCHHHHHHHhC
Confidence 7899999999999984 34467787777777777766665322111 13677777777654
No 104
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.82 E-value=8.9e-20 Score=182.05 Aligned_cols=184 Identities=25% Similarity=0.358 Sum_probs=141.8
Q ss_pred HHHhhhhchHHHHHH---HHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeE
Q 011578 203 NELSNIVGLHELKIQ---LRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 279 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 279 (482)
+.+++++|++.+... +.+++. .....+++|+||||||||++|+++|+.+.. .|+
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~----------------~~~~~~ilL~GppGtGKTtLA~~ia~~~~~-------~~~ 65 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIE----------------AGRLSSMILWGPPGTGKTTLARIIAGATDA-------PFE 65 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHH----------------cCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEE
Confidence 467889999988665 555431 224568999999999999999999997754 677
Q ss_pred EeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEec
Q 011578 280 EVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG 352 (482)
Q Consensus 280 ~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~ 352 (482)
.+++... +...++++++.+ ++.||||||+|.+....+ +.|+..++++.+++|++|
T Consensus 66 ~l~a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q-----------~~LL~~le~~~iilI~at 127 (413)
T PRK13342 66 ALSAVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQ-----------DALLPHVEDGTITLIGAT 127 (413)
T ss_pred EEecccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHH-----------HHHHHHhhcCcEEEEEeC
Confidence 7776532 123344555443 558999999999986444 788999999999999998
Q ss_pred CchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcccc
Q 011578 353 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 432 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 432 (482)
+.++...+ ++++++|| ..+.|++++.+++..+++..+.+... ++ ..++++++..++... .|
T Consensus 128 t~n~~~~l---~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~-----~~---i~i~~~al~~l~~~s-------~G 188 (413)
T PRK13342 128 TENPSFEV---NPALLSRA-QVFELKPLSEEDIEQLLKRALEDKER-----GL---VELDDEALDALARLA-------NG 188 (413)
T ss_pred CCChhhhc---cHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhc-----CC---CCCCHHHHHHHHHhC-------CC
Confidence 87776555 89999999 89999999999999999998876421 21 356788888887754 68
Q ss_pred CcchhHHHHHHHHH
Q 011578 433 NGGLVDPMLVNARE 446 (482)
Q Consensus 433 ~~~~l~~~~~~a~~ 446 (482)
+.|.+.++++.+..
T Consensus 189 d~R~aln~Le~~~~ 202 (413)
T PRK13342 189 DARRALNLLELAAL 202 (413)
T ss_pred CHHHHHHHHHHHHH
Confidence 88999999888764
No 105
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.82 E-value=4.8e-19 Score=169.94 Aligned_cols=163 Identities=18% Similarity=0.276 Sum_probs=111.8
Q ss_pred CCcEEEEecccccccCCCCCCCh-hHHHHHHHHHhhhcC------------CcEEEEEecC---chhHHHHHhcCccccC
Q 011578 306 EGGILFVDEAYRLIPMQKADDKD-YGIEALEEIMSVMDG------------GKVVVIFAGY---SEPMKRVIASNEGFCR 369 (482)
Q Consensus 306 ~~~vl~iDE~d~l~~~~~~~~~~-~~~~~~~~ll~~l~~------------~~~~vi~~~~---~~~~~~~~~~~~~l~~ 369 (482)
..|||||||||+++.+.++.+.+ .+..+...||..+++ ..+.+|+++. ..+ .++ -|.|.+
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp-~Dl---IPEl~G 324 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKP-SDL---IPELQG 324 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCCh-hhc---cHHHhC
Confidence 55999999999999875433323 345688999999987 4567777763 222 223 699999
Q ss_pred CCcceeeCCCCCHHHHHHHH----HHHHhccccccccccccccCcccHHHHHHHHHHHhhH-hhccccCcchhHHHHHHH
Q 011578 370 RVTKFFHFNDFNSEELAKIL----HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE-KQRREMNGGLVDPMLVNA 444 (482)
Q Consensus 370 R~~~~i~~~~~~~~~~~~il----~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~a 444 (482)
||+.++.+.+++.++..+|| ...+++.......+|. ...++++++.++++..... .......+|.|+.++++.
T Consensus 325 R~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv--~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~ 402 (443)
T PRK05201 325 RFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGV--TLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKL 402 (443)
T ss_pred ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCc--EEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHH
Confidence 99999999999999999999 3344444332333344 4567999999999877531 111345689999999998
Q ss_pred HHHhhhhhcCCCCCh-hhhhcccHHHHHHHHHHHH
Q 011578 445 RENLDLRLSFDCLDT-DELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 445 ~~~~~~r~~~~~~~~-~~~~~i~~~d~~~al~~~~ 478 (482)
.... +++.++. .....|+.+-+.+.+..+.
T Consensus 403 L~d~----~Fe~p~~~~~~v~I~~~~V~~~l~~l~ 433 (443)
T PRK05201 403 LEDI----SFEAPDMSGETVTIDAAYVDEKLGDLV 433 (443)
T ss_pred HHHH----hccCCCCCCCEEEECHHHHHHHHHHHH
Confidence 8774 3333332 2234677777777766553
No 106
>PHA02730 ankyrin-like protein; Provisional
Probab=99.82 E-value=7e-20 Score=186.75 Aligned_cols=159 Identities=19% Similarity=0.193 Sum_probs=131.9
Q ss_pred HhHHHHHcC---CHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCc----HHHHHHHHcCCCCCCcccccCcCCCChH
Q 011578 16 TIHGCAQSG---DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK----AEIVKSLLEWPGNDKVELEAQNMYGETP 88 (482)
Q Consensus 16 ~l~~a~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~~~~g~tp 88 (482)
.||.-...+ +.++++.|| .+|+++|.. . .|+||||+|+..++ .+++++|+++|+ +.+++.+|..|.||
T Consensus 346 ~l~~Y~~~~~~v~ieIvelLI-s~GAdIN~k-~-~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga--~~dIN~kd~~G~T~ 420 (672)
T PHA02730 346 MLINYLHYGDMVSIPILRCML-DNGATMDKT-T-DNNYPLHDYFVNNNNIVDVNVVRFIVENNG--HMAINHVSNNGRLC 420 (672)
T ss_pred HHHHHHhcCCcCcHHHHHHHH-HCCCCCCcC-C-CCCcHHHHHHHHcCCcchHHHHHHHHHcCC--CccccccccCCCch
Confidence 677777766 578888777 557888875 4 49999999998875 899999999532 24689999999999
Q ss_pred HHH---HHHcC---------CHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCC-CC
Q 011578 89 LHM---AAKNG---------CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN-EG 155 (482)
Q Consensus 89 Lh~---A~~~g---------~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~-~g 155 (482)
||. |...+ ..+++++|+.+|+++|.+|..|+||||+|+ ..++.+++++|+++|+++|.+|. .|
T Consensus 421 Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa----~~~~~eive~LI~~GAdIN~~d~~~g 496 (672)
T PHA02730 421 MYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAV----DVNNIQFARRLLEYGASVNTTSRSII 496 (672)
T ss_pred HhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHH----HhCCHHHHHHHHHCCCCCCCCCCcCC
Confidence 994 33332 235799999999999999999999999999 78899999999999999999997 59
Q ss_pred CChhhhhhcC-CCChHHHHHHHhhhHHHH
Q 011578 156 KTPLDHLSNG-PGSAKLRELLLWHSEEQR 183 (482)
Q Consensus 156 ~tpl~~~a~~-~~~~~~~~lL~~~~~~~~ 183 (482)
.||||+++.. .++.+++++|+.+|+...
T Consensus 497 ~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~ 525 (672)
T PHA02730 497 NTAIQKSSYRRENKTKLVDLLLSYHPTLE 525 (672)
T ss_pred cCHHHHHHHhhcCcHHHHHHHHHcCCCHH
Confidence 9999777653 467899999999987653
No 107
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.82 E-value=7e-19 Score=168.73 Aligned_cols=163 Identities=17% Similarity=0.285 Sum_probs=111.8
Q ss_pred CCcEEEEecccccccCCCCCCCh-hHHHHHHHHHhhhcC------------CcEEEEEecC---chhHHHHHhcCccccC
Q 011578 306 EGGILFVDEAYRLIPMQKADDKD-YGIEALEEIMSVMDG------------GKVVVIFAGY---SEPMKRVIASNEGFCR 369 (482)
Q Consensus 306 ~~~vl~iDE~d~l~~~~~~~~~~-~~~~~~~~ll~~l~~------------~~~~vi~~~~---~~~~~~~~~~~~~l~~ 369 (482)
..|||||||||+++.+..+.+.+ .+..|...||..+++ ..+.+|+++. ..+. ++ -|.|.+
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~-Dl---IPEl~G 322 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPS-DL---IPELQG 322 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChh-hc---cHHHhC
Confidence 45999999999999866433333 345688999999987 4567777663 2222 22 699999
Q ss_pred CCcceeeCCCCCHHHHHHHH----HHHHhccccccccccccccCcccHHHHHHHHHHHhhHh-hccccCcchhHHHHHHH
Q 011578 370 RVTKFFHFNDFNSEELAKIL----HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEK-QRREMNGGLVDPMLVNA 444 (482)
Q Consensus 370 R~~~~i~~~~~~~~~~~~il----~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~l~~~~~~a 444 (482)
||+.++.+.+++.++..+|| ...+++.......+| +...++++++.++++...... ......+|.|+.+++..
T Consensus 323 R~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~eg--v~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~ 400 (441)
T TIGR00390 323 RFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEG--VNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERL 400 (441)
T ss_pred ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcC--cEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHH
Confidence 99999999999999999999 233343332222334 445679999999998765211 11345679999999998
Q ss_pred HHHhhhhhcCCCCCh-hhhhcccHHHHHHHHHHHH
Q 011578 445 RENLDLRLSFDCLDT-DELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 445 ~~~~~~r~~~~~~~~-~~~~~i~~~d~~~al~~~~ 478 (482)
.... +++.++. .....|+.+-+.+.+..+.
T Consensus 401 l~d~----~fe~p~~~~~~v~I~~~~V~~~l~~~~ 431 (441)
T TIGR00390 401 LEDI----SFEAPDLSGQNITIDADYVSKKLGALV 431 (441)
T ss_pred HHHH----HhcCCCCCCCEEEECHHHHHhHHHHHH
Confidence 8774 3333332 2234778888777776654
No 108
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.82 E-value=7.4e-19 Score=172.64 Aligned_cols=257 Identities=18% Similarity=0.267 Sum_probs=167.7
Q ss_pred HHHHHHHHhh-hhchHHHHHHHHHHHHHHhHHHHHHHcCCC---CCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC
Q 011578 198 MDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLK---VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL 273 (482)
Q Consensus 198 ~~~~~~~l~~-i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~ 273 (482)
..++...+++ ++|++.+++.+...+.. +..+...... -...+..++||+||||||||++|+++|+.+..
T Consensus 62 p~~i~~~L~~~ViGq~~ak~~l~~av~~---~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~---- 134 (412)
T PRK05342 62 PKEIKAHLDQYVIGQERAKKVLSVAVYN---HYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV---- 134 (412)
T ss_pred HHHHHHHHhhHeeChHHHHHHHHHHHHH---HHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC----
Confidence 3455666664 89999999988654321 1122111111 11124578999999999999999999998865
Q ss_pred CCCCeEEeeccccc-ccccccchhh-HHHHH-------HhcCCcEEEEecccccccCCCCC--CCh-hHHHHHHHHHhhh
Q 011578 274 PTDRVTEVQRTDLV-GEFVGHTGPK-TRRRI-------KEAEGGILFVDEAYRLIPMQKAD--DKD-YGIEALEEIMSVM 341 (482)
Q Consensus 274 ~~~~~~~~~~~~~~-~~~~g~~~~~-~~~~~-------~~a~~~vl~iDE~d~l~~~~~~~--~~~-~~~~~~~~ll~~l 341 (482)
+|+.++++.+. ..|+|+.... +..++ +.+.++||||||||++.++..+. ..+ .+..+.+.||+.|
T Consensus 135 ---pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~L 211 (412)
T PRK05342 135 ---PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIL 211 (412)
T ss_pred ---CceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHH
Confidence 88888887765 3588875433 34433 45677999999999998864321 112 2346778899988
Q ss_pred cCCc---------------EEEEEecCc--------hhH----------------------------HHHH---------
Q 011578 342 DGGK---------------VVVIFAGYS--------EPM----------------------------KRVI--------- 361 (482)
Q Consensus 342 ~~~~---------------~~vi~~~~~--------~~~----------------------------~~~~--------- 361 (482)
++.. .++|.|++. ... ..++
T Consensus 212 eg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~ 291 (412)
T PRK05342 212 EGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLI 291 (412)
T ss_pred hcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHH
Confidence 7421 123333221 000 0111
Q ss_pred h--cCccccCCCcceeeCCCCCHHHHHHHHHH----HHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcc
Q 011578 362 A--SNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 435 (482)
Q Consensus 362 ~--~~~~l~~R~~~~i~~~~~~~~~~~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 435 (482)
. ..|+|..|+|.++.|.+++.+++.+|+.. .+++..+....++ +...++++++..+++..+ .....+|
T Consensus 292 ~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~--i~L~~t~~al~~Ia~~~~----~~~~GAR 365 (412)
T PRK05342 292 KFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDG--VELEFTDEALEAIAKKAI----ERKTGAR 365 (412)
T ss_pred HHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--cEEEECHHHHHHHHHhCC----CCCCCCc
Confidence 0 15999999999999999999999999983 4443332222233 445689999999999743 2356789
Q ss_pred hhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHH
Q 011578 436 LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA 472 (482)
Q Consensus 436 ~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~ 472 (482)
.|+.++++.+......+.... ......|+.+.+.+
T Consensus 366 ~Lrriie~~l~~~~~~~p~~~--~~~~v~I~~~~v~~ 400 (412)
T PRK05342 366 GLRSILEEILLDVMFELPSRE--DVEKVVITKEVVEG 400 (412)
T ss_pred hHHHHHHHHhHHHHHhccccC--CCceEEECHHHhcc
Confidence 999999999998766554311 11234677777653
No 109
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.82 E-value=2.4e-19 Score=183.19 Aligned_cols=213 Identities=21% Similarity=0.273 Sum_probs=153.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcC--CC-CCCCeE
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG--IL-PTDRVT 279 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~--~~-~~~~~~ 279 (482)
..|++++|++...+.++..+ ....+.+++|+||||||||++|+++++.+.... .. ...+|+
T Consensus 62 ~~f~~iiGqs~~i~~l~~al----------------~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi 125 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAAL----------------CGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFV 125 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHH----------------hCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEE
Confidence 56888999999888877431 123567899999999999999999998765321 12 246899
Q ss_pred Eeecccc-------ccccccc--------------ch--hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHH
Q 011578 280 EVQRTDL-------VGEFVGH--------------TG--PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEE 336 (482)
Q Consensus 280 ~~~~~~~-------~~~~~g~--------------~~--~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ 336 (482)
+++++.. ....+|. ++ ......+.++.+++|||||++.|.+..| +.
T Consensus 126 ~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q-----------~~ 194 (531)
T TIGR02902 126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQM-----------NK 194 (531)
T ss_pred EEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHH-----------HH
Confidence 8887531 1112221 11 1122357788899999999999998555 77
Q ss_pred HHhhhcCC------------------------------cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHH
Q 011578 337 IMSVMDGG------------------------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELA 386 (482)
Q Consensus 337 ll~~l~~~------------------------------~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~ 386 (482)
|++.|+++ ++++|++|++++. .+ +|++++|+ ..+.|++++.+++.
T Consensus 195 LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~-~L---~paLrsR~-~~I~f~pL~~eei~ 269 (531)
T TIGR02902 195 LLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPE-EI---PPALRSRC-VEIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcc-cC---ChHHhhhh-heeeCCCCCHHHHH
Confidence 77776542 2467777666553 23 89999998 68899999999999
Q ss_pred HHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhccc
Q 011578 387 KILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTIT 466 (482)
Q Consensus 387 ~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~ 466 (482)
+|++..+++.. ..+++++++.+..+.+ |+|++.++++.|...+..+ ....|+
T Consensus 270 ~Il~~~a~k~~-----------i~is~~al~~I~~y~~--------n~Rel~nll~~Aa~~A~~~---------~~~~It 321 (531)
T TIGR02902 270 EIAKNAAEKIG-----------INLEKHALELIVKYAS--------NGREAVNIVQLAAGIALGE---------GRKRIL 321 (531)
T ss_pred HHHHHHHHHcC-----------CCcCHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHhhC---------CCcEEc
Confidence 99999988642 3578888887776542 6899999999998755221 124699
Q ss_pred HHHHHHHHH
Q 011578 467 LEDLEAGLK 475 (482)
Q Consensus 467 ~~d~~~al~ 475 (482)
.+|++.++.
T Consensus 322 ~~dI~~vl~ 330 (531)
T TIGR02902 322 AEDIEWVAE 330 (531)
T ss_pred HHHHHHHhC
Confidence 999998875
No 110
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.9e-19 Score=178.38 Aligned_cols=211 Identities=20% Similarity=0.292 Sum_probs=162.2
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
+-.|++++|++|.+++..-. .+ +....+-++|+||||+|||++||.||..+++ .|+.++...+
T Consensus 412 DHYgm~dVKeRILEfiAV~k---Lr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR-------kFfRfSvGG~ 474 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGK---LR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNR-------KFFRFSVGGM 474 (906)
T ss_pred cccchHHHHHHHHHHHHHHh---hc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCC-------ceEEEecccc
Confidence 57999999999999865332 11 1224455789999999999999999999988 6777766432
Q ss_pred ------c---ccccccchhhHHHHHHhc--CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC------------
Q 011578 287 ------V---GEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------------ 343 (482)
Q Consensus 287 ------~---~~~~g~~~~~~~~~~~~a--~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~------------ 343 (482)
. ..|+|....++-+.++.. ..-+++|||||++....|++.. ++||+.||.
T Consensus 475 tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPa-------sALLElLDPEQNanFlDHYLd 547 (906)
T KOG2004|consen 475 TDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPA-------SALLELLDPEQNANFLDHYLD 547 (906)
T ss_pred ccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChH-------HHHHHhcChhhccchhhhccc
Confidence 2 239999999999998865 4589999999999965554333 567777763
Q ss_pred -----CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccc-cccCcccHHHHH
Q 011578 344 -----GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSCSMDAIA 417 (482)
Q Consensus 344 -----~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~-~~~~~~~~~~l~ 417 (482)
.+|.+|+|.+ .++.+ .|+|++|+ ++|+++.|..+|...|.+.||-.... ...|+ .-..+++++++.
T Consensus 548 Vp~DLSkVLFicTAN--~idtI---P~pLlDRM-EvIelsGYv~eEKv~IA~~yLip~a~--~~~gl~~e~v~is~~al~ 619 (906)
T KOG2004|consen 548 VPVDLSKVLFICTAN--VIDTI---PPPLLDRM-EVIELSGYVAEEKVKIAERYLIPQAL--KDCGLKPEQVKISDDALL 619 (906)
T ss_pred cccchhheEEEEecc--ccccC---Chhhhhhh-heeeccCccHHHHHHHHHHhhhhHHH--HHcCCCHHhcCccHHHHH
Confidence 4678888743 34433 89999999 99999999999999999999876643 23466 445678999999
Q ss_pred HHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcC
Q 011578 418 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSF 454 (482)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~ 454 (482)
.++++|++ ....|.|+.-++..+|+.+.++..
T Consensus 620 ~lI~~Ycr-----EaGVRnLqk~iekI~Rk~Al~vv~ 651 (906)
T KOG2004|consen 620 ALIERYCR-----EAGVRNLQKQIEKICRKVALKVVE 651 (906)
T ss_pred HHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999984 344688888888888888887753
No 111
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.9e-19 Score=167.60 Aligned_cols=216 Identities=19% Similarity=0.204 Sum_probs=148.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++.+..+..+|+.+.......+.+ ..+..+++||||||||||++||-||...+..+..+++.-+.--
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~h--------~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl 423 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKKH--------QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL 423 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhcccccc--------cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc
Confidence 34778888999999998875544332222 2356789999999999999999999988875555554433211
Q ss_pred cccccccccccchhhHHHHHHhc----CCcEEEEecccccccCCCCCC-ChhHHHHHHHHHhhhc--CCcEEEEEecCch
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADD-KDYGIEALEEIMSVMD--GGKVVVIFAGYSE 355 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a----~~~vl~iDE~d~l~~~~~~~~-~~~~~~~~~~ll~~l~--~~~~~vi~~~~~~ 355 (482)
+. +...++.++|+=+ ++-+|||||+|.+.-.|...- ++..+.++|.||-.-- +.+++++++|+..
T Consensus 424 G~--------qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrp 495 (630)
T KOG0742|consen 424 GA--------QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRP 495 (630)
T ss_pred ch--------HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCc
Confidence 11 2335677888643 457999999999998887543 6677889999987764 3678888886543
Q ss_pred hHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccc---------------cccccCcccHHHHHHHH
Q 011578 356 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLY---------------GFKLHSSCSMDAIAALI 420 (482)
Q Consensus 356 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~ 420 (482)
.- + |.++-+|||++++||.|..|||.+++..|+.+....-... .+++........+.+.+
T Consensus 496 gd--l---DsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaA 570 (630)
T KOG0742|consen 496 GD--L---DSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAA 570 (630)
T ss_pred cc--h---hHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHH
Confidence 32 2 7788889999999999999999999999998865221111 22333323334444444
Q ss_pred HHHhhHhhccccCcchhHHHHHHHH
Q 011578 421 EKETTEKQRREMNGGLVDPMLVNAR 445 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~~l~~~~~~a~ 445 (482)
... .+..||+|-.++-...
T Consensus 571 kkT------eGfSGREiakLva~vQ 589 (630)
T KOG0742|consen 571 KKT------EGFSGREIAKLVASVQ 589 (630)
T ss_pred Hhc------cCCcHHHHHHHHHHHH
Confidence 433 2567888877765443
No 112
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.81 E-value=4.1e-19 Score=185.56 Aligned_cols=192 Identities=21% Similarity=0.335 Sum_probs=140.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+..........+. .....+++|+||||||||++|+++|+.+.. .|+.++
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~-------------~~~~~slLL~GPpGtGKTTLA~aIA~~~~~-------~f~~ln 84 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIK-------------ADRVGSLILYGPPGVGKTTLARIIANHTRA-------HFSSLN 84 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHh-------------cCCCceEEEECCCCCCHHHHHHHHHHHhcC-------cceeeh
Confidence 567899999988753222211121 234568999999999999999999997754 566666
Q ss_pred cccccccccccchhhHHHHHHh--------cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKE--------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~--------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
+.... ...+++.++. ....||||||+|.+....+ +.|+..++++.+++|++|+.
T Consensus 85 a~~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQ-----------daLL~~lE~g~IiLI~aTTe 146 (725)
T PRK13341 85 AVLAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQ-----------DALLPWVENGTITLIGATTE 146 (725)
T ss_pred hhhhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHH-----------HHHHHHhcCceEEEEEecCC
Confidence 54211 1112222222 1347999999999987544 78899999999999999988
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
++...+ ++++.+|+ ..+.|++++.+++..+++..+.+.... ++ .....++++++..++... .||.
T Consensus 147 np~~~l---~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~---~g-~~~v~I~deaL~~La~~s-------~GD~ 211 (725)
T PRK13341 147 NPYFEV---NKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERG---YG-DRKVDLEPEAEKHLVDVA-------NGDA 211 (725)
T ss_pred ChHhhh---hhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhh---cC-CcccCCCHHHHHHHHHhC-------CCCH
Confidence 887656 78899997 789999999999999999998753210 01 123567889999999864 7899
Q ss_pred chhHHHHHHHHHH
Q 011578 435 GLVDPMLVNAREN 447 (482)
Q Consensus 435 ~~l~~~~~~a~~~ 447 (482)
|.+.++++.+...
T Consensus 212 R~lln~Le~a~~~ 224 (725)
T PRK13341 212 RSLLNALELAVES 224 (725)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998753
No 113
>PHA02917 ankyrin-like protein; Provisional
Probab=99.81 E-value=1.5e-19 Score=188.80 Aligned_cols=156 Identities=19% Similarity=0.120 Sum_probs=121.8
Q ss_pred hHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHH--HhCCcHHHHHHHHcCCCCCCcccccCcC---CC----
Q 011578 15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVS--AGYNKAEIVKSLLEWPGNDKVELEAQNM---YG---- 85 (482)
Q Consensus 15 t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~---~g---- 85 (482)
+++|+|+..|+.++|+.|| ..|.++|..+.. |+||||+| +..|+.++|++|++ .|++++.+|. .|
T Consensus 105 ~~~~~a~~~~~~e~vk~Ll-~~Gadin~~d~~-g~T~L~~~~a~~~~~~eivklLi~----~Ga~vn~~d~~~~~g~~~~ 178 (661)
T PHA02917 105 IFSYMKSKNVDVDLIKVLV-EHGFDLSVKCEN-HRSVIENYVMTDDPVPEIIDLFIE----NGCSVLYEDEDDEYGYAYD 178 (661)
T ss_pred hHHHHHhhcCCHHHHHHHH-HcCCCCCccCCC-CccHHHHHHHccCCCHHHHHHHHH----cCCCccccccccccccccc
Confidence 3344445555666777666 557888988876 99999954 45789999999999 4677765542 34
Q ss_pred -------ChHHHHHHH-----------cCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCCh--HHHHHHHhhCC
Q 011578 86 -------ETPLHMAAK-----------NGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSED--YATVKTLLEYN 145 (482)
Q Consensus 86 -------~tpLh~A~~-----------~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~--~~~v~~Ll~~g 145 (482)
.||||+|+. .++.+++++|+++|+|+|.+|.+|+||||+|+ ..|+ .++|++|++ |
T Consensus 179 ~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~----~~g~~~~eivk~Li~-g 253 (661)
T PHA02917 179 DYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYI----KSSHIDIDIVKLLMK-G 253 (661)
T ss_pred cccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHH----HcCCCcHHHHHHHHh-C
Confidence 599999986 46899999999999999999999999999999 6776 489999985 8
Q ss_pred CCcc----ccCCCCCChhhhhhc------C--CCChHHHHHHHhhhHH
Q 011578 146 ADCS----AKDNEGKTPLDHLSN------G--PGSAKLRELLLWHSEE 181 (482)
Q Consensus 146 ad~~----~~d~~g~tpl~~~a~------~--~~~~~~~~lL~~~~~~ 181 (482)
++++ ..|..|.+|+++++. . ....+++++|++.|++
T Consensus 254 ~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~ 301 (661)
T PHA02917 254 IDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP 301 (661)
T ss_pred CcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence 8876 466678888855551 1 1266899999999985
No 114
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=7.5e-19 Score=180.32 Aligned_cols=224 Identities=21% Similarity=0.356 Sum_probs=169.3
Q ss_pred HHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC
Q 011578 199 DELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 277 (482)
Q Consensus 199 ~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~ 277 (482)
-.++..+. .++||+...+.+.+.+ ++...|...+..|..++||.||+|+|||.+|++||..++. ....
T Consensus 483 l~le~~L~~rViGQd~AV~avs~aI-------rraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg----~e~a 551 (786)
T COG0542 483 LNLERRLKKRVIGQDEAVEAVSDAI-------RRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFG----DEQA 551 (786)
T ss_pred HHHHHHHhcceeChHHHHHHHHHHH-------HHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcC----CCcc
Confidence 34444444 4789998888777653 5566777777777789999999999999999999998862 1125
Q ss_pred eEEeecccc---------ccc---cccc-chhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC
Q 011578 278 VTEVQRTDL---------VGE---FVGH-TGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG 344 (482)
Q Consensus 278 ~~~~~~~~~---------~~~---~~g~-~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 344 (482)
++.++-|++ ++. |||. .+..+++.++..+++||+||||++.+| +++|.|||.||+|
T Consensus 552 liR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHp-----------dV~nilLQVlDdG 620 (786)
T COG0542 552 LIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHP-----------DVFNLLLQVLDDG 620 (786)
T ss_pred ceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCH-----------HHHHHHHHHhcCC
Confidence 666666653 332 7885 456788889988899999999999999 8889999999974
Q ss_pred c-------------EEEEEecCchh--HHH-------------------HHhc--CccccCCCcceeeCCCCCHHHHHHH
Q 011578 345 K-------------VVVIFAGYSEP--MKR-------------------VIAS--NEGFCRRVTKFFHFNDFNSEELAKI 388 (482)
Q Consensus 345 ~-------------~~vi~~~~~~~--~~~-------------------~~~~--~~~l~~R~~~~i~~~~~~~~~~~~i 388 (482)
+ .++|+|++--. +.. .+.. .|+|+.|+|.+|.|.+++.+++.+|
T Consensus 621 rLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~I 700 (786)
T COG0542 621 RLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERI 700 (786)
T ss_pred eeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHH
Confidence 3 37777764110 000 0000 2999999999999999999999999
Q ss_pred HHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhh
Q 011578 389 LHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDL 450 (482)
Q Consensus 389 l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 450 (482)
+..++.+...+...++ +...+++++.+.++...+. ....+|.++.+++.-......
T Consensus 701 v~~~L~~l~~~L~~~~--i~l~~s~~a~~~l~~~gyd----~~~GARpL~R~Iq~~i~~~La 756 (786)
T COG0542 701 VDLQLNRLAKRLAERG--ITLELSDEAKDFLAEKGYD----PEYGARPLRRAIQQEIEDPLA 756 (786)
T ss_pred HHHHHHHHHHHHHhCC--ceEEECHHHHHHHHHhccC----CCcCchHHHHHHHHHHHHHHH
Confidence 9999999887655334 4557799999999998763 355679999998887776543
No 115
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.81 E-value=1.3e-19 Score=169.92 Aligned_cols=124 Identities=25% Similarity=0.294 Sum_probs=105.1
Q ss_pred CCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC----cCCCChHHHHHHHcCCHHHHHHHHhCCCCcccc-ccC
Q 011578 43 RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ----NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAK-ANN 117 (482)
Q Consensus 43 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~----~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~-d~~ 117 (482)
.+...-.+|||+|+..|+.+++++|++ .|++++.+ +..|.||||+|+..++.+++++|+++|||+|.+ +..
T Consensus 28 ~d~~~~~~lL~~A~~~~~~eivk~LL~----~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~ 103 (300)
T PHA02884 28 KNKICIANILYSSIKFHYTDIIDAILK----LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEA 103 (300)
T ss_pred cCcCCCCHHHHHHHHcCCHHHHHHHHH----CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCC
Confidence 344423467788888899999999999 57778876 468999999999999999999999999999986 568
Q ss_pred CCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHH
Q 011578 118 GMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 175 (482)
Q Consensus 118 g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL 175 (482)
|.||||+|+ ..++.+++++|+++|++++.+|..|+||||+|+.. +...+..++
T Consensus 104 g~TpLh~Aa----~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~-~~~~~~~~~ 156 (300)
T PHA02884 104 KITPLYISV----LHGCLKCLEILLSYGADINIQTNDMVTPIELALMI-CNNFLAFMI 156 (300)
T ss_pred CCCHHHHHH----HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHh-CChhHHHHh
Confidence 999999999 88999999999999999999999999999666554 444455444
No 116
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.80 E-value=1.1e-18 Score=168.23 Aligned_cols=186 Identities=20% Similarity=0.280 Sum_probs=128.5
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|++++++++..++.... .....+.+++|+||||||||++|+++|+.+.. .+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~-----------~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~-------~~~~~~~ 63 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAK-----------MRQEALDHLLLYGPPGLGKTTLAHIIANEMGV-------NLKITSG 63 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHH-----------hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------CEEEecc
Confidence 57899999999999988754332 11234678999999999999999999998864 3433332
Q ss_pred ccccccccccchhhHHHHHHh-cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC------------------
Q 011578 284 TDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------------------ 344 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~-a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~------------------ 344 (482)
+.... ...+...+.. ..+.||||||++.+.+..+ ..|+..|++.
T Consensus 64 ~~~~~------~~~l~~~l~~~~~~~vl~iDEi~~l~~~~~-----------e~l~~~~~~~~~~~v~~~~~~~~~~~~~ 126 (305)
T TIGR00635 64 PALEK------PGDLAAILTNLEEGDVLFIDEIHRLSPAVE-----------ELLYPAMEDFRLDIVIGKGPSARSVRLD 126 (305)
T ss_pred chhcC------chhHHHHHHhcccCCEEEEehHhhhCHHHH-----------HHhhHHHhhhheeeeeccCccccceeec
Confidence 22111 1122233332 3468999999999986433 3455554432
Q ss_pred --cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHH
Q 011578 345 --KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 422 (482)
Q Consensus 345 --~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (482)
.+++|++|+.... + .+++++||...+.|++|+.+++.++++..+.... ..++++++..++..
T Consensus 127 ~~~~~li~~t~~~~~--l---~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~-----------~~~~~~al~~ia~~ 190 (305)
T TIGR00635 127 LPPFTLVGATTRAGM--L---TSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLN-----------VEIEPEAALEIARR 190 (305)
T ss_pred CCCeEEEEecCCccc--c---CHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhC-----------CCcCHHHHHHHHHH
Confidence 2556666554432 2 6788999988999999999999999998876432 45788899888886
Q ss_pred HhhHhhccccCcchhHHHHHHHHHH
Q 011578 423 ETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 423 ~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
. .|+.|.+.++++.+...
T Consensus 191 ~-------~G~pR~~~~ll~~~~~~ 208 (305)
T TIGR00635 191 S-------RGTPRIANRLLRRVRDF 208 (305)
T ss_pred h-------CCCcchHHHHHHHHHHH
Confidence 5 56677777777766543
No 117
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.80 E-value=1.6e-18 Score=168.21 Aligned_cols=207 Identities=19% Similarity=0.266 Sum_probs=141.0
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++..++.+..++..... ...++.+++|+||||||||++|+++|++++. .+...+
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~-----------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~-------~~~~~~ 83 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK-----------RGEALDHVLLYGPPGLGKTTLANIIANEMGV-------NIRITS 83 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh-----------cCCCCCcEEEECCCCccHHHHHHHHHHHhCC-------CeEEEe
Confidence 4788999999999999887543321 1235678999999999999999999998864 344333
Q ss_pred cccccccccccchhhHHHHHHh-cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC------------------
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------------------ 343 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~-a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~------------------ 343 (482)
.+.+. ....+..++.. ..++||||||||.+....+ +.|...|++
T Consensus 84 ~~~~~------~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~-----------e~l~~~~e~~~~~~~l~~~~~~~~~~~ 146 (328)
T PRK00080 84 GPALE------KPGDLAAILTNLEEGDVLFIDEIHRLSPVVE-----------EILYPAMEDFRLDIMIGKGPAARSIRL 146 (328)
T ss_pred ccccc------ChHHHHHHHHhcccCCEEEEecHhhcchHHH-----------HHHHHHHHhcceeeeeccCccccceee
Confidence 33221 11233444443 3568999999999975332 233444432
Q ss_pred --CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHH
Q 011578 344 --GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 421 (482)
Q Consensus 344 --~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (482)
..+++|++|+.... + .+++++||...+.|++|+.+++.+|++..+.... ..++++++..++.
T Consensus 147 ~l~~~~li~at~~~~~--l---~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~-----------~~~~~~~~~~ia~ 210 (328)
T PRK00080 147 DLPPFTLIGATTRAGL--L---TSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG-----------VEIDEEGALEIAR 210 (328)
T ss_pred cCCCceEEeecCCccc--C---CHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-----------CCcCHHHHHHHHH
Confidence 12566777655432 2 6778999999999999999999999998877642 4568888998888
Q ss_pred HHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHH
Q 011578 422 KETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 476 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~ 476 (482)
.+ .++.|.+.++++++...+..+ ....|+.+++.+++..
T Consensus 211 ~~-------~G~pR~a~~~l~~~~~~a~~~---------~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 211 RS-------RGTPRIANRLLRRVRDFAQVK---------GDGVITKEIADKALDM 249 (328)
T ss_pred Hc-------CCCchHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHH
Confidence 66 566788888888765543211 1124555555555544
No 118
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.80 E-value=1.5e-18 Score=182.12 Aligned_cols=221 Identities=18% Similarity=0.257 Sum_probs=158.0
Q ss_pred HHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCe
Q 011578 200 ELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV 278 (482)
Q Consensus 200 ~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~ 278 (482)
.+...+. .++|++.+++.+.+.+.... .+......+..++||+||||||||++|+++|+.++. ++
T Consensus 451 ~l~~~L~~~ViGQ~~ai~~l~~~i~~~~-------~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-------~~ 516 (758)
T PRK11034 451 NLGDRLKMLVFGQDKAIEALTEAIKMSR-------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-------EL 516 (758)
T ss_pred HHHHHhcceEeCcHHHHHHHHHHHHHHh-------ccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-------Cc
Confidence 3444444 47999999999988754332 233222334567999999999999999999998854 67
Q ss_pred EEeeccccc-----cc-------ccccc-hhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-
Q 011578 279 TEVQRTDLV-----GE-------FVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG- 344 (482)
Q Consensus 279 ~~~~~~~~~-----~~-------~~g~~-~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~- 344 (482)
+.++.+++. .+ |+|.. +..+.+.+...+.+||||||||++++ ++.+.|++.|++|
T Consensus 517 i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~-----------~v~~~LLq~ld~G~ 585 (758)
T PRK11034 517 LRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNLLLQVMDNGT 585 (758)
T ss_pred EEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH-----------HHHHHHHHHHhcCe
Confidence 777766542 22 34432 34566667777889999999999987 5679999999864
Q ss_pred ------------cEEEEEecCchhH-------------------HHH-HhcCccccCCCcceeeCCCCCHHHHHHHHHHH
Q 011578 345 ------------KVVVIFAGYSEPM-------------------KRV-IASNEGFCRRVTKFFHFNDFNSEELAKILHIK 392 (482)
Q Consensus 345 ------------~~~vi~~~~~~~~-------------------~~~-~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 392 (482)
..++|+||+...- ..+ -.-.|+|.+|+|.+|.|++++.+++.+|+..+
T Consensus 586 ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~ 665 (758)
T PRK11034 586 LTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKF 665 (758)
T ss_pred eecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHH
Confidence 3457777652100 000 01149999999999999999999999999999
Q ss_pred HhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhh
Q 011578 393 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLR 451 (482)
Q Consensus 393 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r 451 (482)
+.+..++...++ +...++++++..++...+ .....+|.++.++++-+......
T Consensus 666 l~~~~~~l~~~~--i~l~~~~~~~~~l~~~~~----~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 666 IVELQAQLDQKG--VSLEVSQEARDWLAEKGY----DRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred HHHHHHHHHHCC--CCceECHHHHHHHHHhCC----CCCCCCchHHHHHHHHHHHHHHH
Confidence 988776544444 456789999999997654 22456899999988887765443
No 119
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.80 E-value=1.8e-18 Score=185.15 Aligned_cols=194 Identities=19% Similarity=0.191 Sum_probs=145.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcC---CCCCCCeE
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVT 279 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~---~~~~~~~~ 279 (482)
..++.++|++...+++.+++. .....+++|+||||||||++|+.+|+.+.... ......++
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~----------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~ 247 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILL----------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLL 247 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHh----------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEE
Confidence 356778999987666555421 12446899999999999999999999885321 22334577
Q ss_pred Eeeccccc--ccccccchhhHHHHHHhcC----CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecC
Q 011578 280 EVQRTDLV--GEFVGHTGPKTRRRIKEAE----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 353 (482)
Q Consensus 280 ~~~~~~~~--~~~~g~~~~~~~~~~~~a~----~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~ 353 (482)
.++.+.+. .++.|+.+..++++|+.+. +.||||||++.+...+.+.+. ..+-+.|+..++.|.+.+|+|||
T Consensus 248 ~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~n~Lkp~l~~G~l~~IgaTT 324 (852)
T TIGR03345 248 SLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ---GDAANLLKPALARGELRTIAATT 324 (852)
T ss_pred EeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc---ccHHHHhhHHhhCCCeEEEEecC
Confidence 77776665 3688999999999998653 479999999999876542221 23446788899999999999999
Q ss_pred chhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHH
Q 011578 354 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 423 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (482)
.+.+...++.+|+|.+|| ..|.+++|+.++..+||+........ .....++++++...+...
T Consensus 325 ~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~-------~~~v~i~d~al~~~~~ls 386 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEK-------HHGVLILDEAVVAAVELS 386 (852)
T ss_pred HHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhh-------cCCCeeCHHHHHHHHHHc
Confidence 988877778899999999 68999999999999998766544321 123456778777666644
No 120
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.79 E-value=3.9e-18 Score=180.52 Aligned_cols=238 Identities=16% Similarity=0.226 Sum_probs=169.4
Q ss_pred hHHHHHHHHhh-hhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC
Q 011578 197 KMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT 275 (482)
Q Consensus 197 ~~~~~~~~l~~-i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~ 275 (482)
.+......++. +.|++.+|++|.+++..... ........++|+||||+|||++++.+|+.++.
T Consensus 312 ~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~----------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~------ 375 (784)
T PRK10787 312 DLRQAQEILDTDHYGLERVKDRILEYLAVQSR----------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGR------ 375 (784)
T ss_pred cHHHHHHHhhhhccCHHHHHHHHHHHHHHHHh----------cccCCCceEEEECCCCCCHHHHHHHHHHHhCC------
Confidence 44455566665 99999999999988653321 11123456999999999999999999998875
Q ss_pred CCeEEeecccc------c---ccccccchhhHHHHHHhcC--CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-
Q 011578 276 DRVTEVQRTDL------V---GEFVGHTGPKTRRRIKEAE--GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG- 343 (482)
Q Consensus 276 ~~~~~~~~~~~------~---~~~~g~~~~~~~~~~~~a~--~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~- 343 (482)
+++.++.+.. . ..|+|.....+.+.+..+. ..||||||+|++.+..+. ...+.|++.+|.
T Consensus 376 -~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g-------~~~~aLlevld~~ 447 (784)
T PRK10787 376 -KYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRG-------DPASALLEVLDPE 447 (784)
T ss_pred -CEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCC-------CHHHHHHHHhccc
Confidence 5666654432 1 2477777777777777653 579999999999876542 123667777764
Q ss_pred ----------------CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhc-cccccccccc-
Q 011578 344 ----------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN-QTEDSLLYGF- 405 (482)
Q Consensus 344 ----------------~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~-~~~~~~~~~~- 405 (482)
+.+++|+|++. . . .+|+|++|| .+|.|++|+.++..+|++.++.. ..++. ++
T Consensus 448 ~~~~~~d~~~~~~~dls~v~~i~TaN~--~-~---i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~---~l~ 517 (784)
T PRK10787 448 QNVAFSDHYLEVDYDLSDVMFVATSNS--M-N---IPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERN---ALK 517 (784)
T ss_pred cEEEEecccccccccCCceEEEEcCCC--C-C---CCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHh---CCC
Confidence 56777776433 2 1 399999999 68999999999999999999952 22111 22
Q ss_pred cccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 406 KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
.....++++++..+++++. ....+|.++..+++.++....++..+.. .....|+.+++.+.|.
T Consensus 518 ~~~l~i~~~ai~~ii~~yt-----~e~GaR~LeR~I~~i~r~~l~~~~~~~~--~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 518 KGELTVDDSAIIGIIRYYT-----REAGVRSLEREISKLCRKAVKQLLLDKS--LKHIEINGDNLHDYLG 580 (784)
T ss_pred CCeEEECHHHHHHHHHhCC-----cccCCcHHHHHHHHHHHHHHHHHHhcCC--CceeeecHHHHHHHhC
Confidence 2346789999999998654 3556899999999999888777542211 1235788888887764
No 121
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.78 E-value=4e-18 Score=178.98 Aligned_cols=237 Identities=17% Similarity=0.236 Sum_probs=163.7
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcC---CCCCCCeEEe
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTEV 281 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~---~~~~~~~~~~ 281 (482)
++.++|.+...+++.+.+.. ....++||+||||||||++|+.+|..+.... ......++.+
T Consensus 185 ~~~liGR~~ei~~~i~iL~r----------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCR----------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhc----------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence 45688888887777765321 2456789999999999999999998774322 1223455565
Q ss_pred eccccc--ccccccchhhHHHHHHh---cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchh
Q 011578 282 QRTDLV--GEFVGHTGPKTRRRIKE---AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEP 356 (482)
Q Consensus 282 ~~~~~~--~~~~g~~~~~~~~~~~~---a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~ 356 (482)
+.+.+. .+|.|+.+.+++++|.. ..++||||||+|.+...+...+ ....+.+.|...+..+++.+|++||.+.
T Consensus 249 ~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~--g~~d~~nlLkp~L~~g~i~vIgATt~~E 326 (758)
T PRK11034 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG--GQVDAANLIKPLLSSGKIRVIGSTTYQE 326 (758)
T ss_pred cHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCC--cHHHHHHHHHHHHhCCCeEEEecCChHH
Confidence 555554 45788888888888764 4568999999999987653211 1235667777888899999999999998
Q ss_pred HHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcc-
Q 011578 357 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG- 435 (482)
Q Consensus 357 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~- 435 (482)
+...+..||+|.+|| ..|.++.|+.+++.+|++....+... .....++++++........ +..+.+
T Consensus 327 ~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~-------~h~v~i~~~al~~a~~ls~-----ryi~~r~ 393 (758)
T PRK11034 327 FSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEA-------HHDVRYTAKAVRAAVELAV-----KYINDRH 393 (758)
T ss_pred HHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhh-------ccCCCcCHHHHHHHHHHhh-----ccccCcc
Confidence 877788899999999 58999999999999999987665442 2335667777766554332 122333
Q ss_pred ---hhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 436 ---LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 436 ---~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
....++++|+... |+.. .......|+.+|+.+.+...
T Consensus 394 lPdKaidlldea~a~~--~~~~---~~~~~~~v~~~~i~~v~~~~ 433 (758)
T PRK11034 394 LPDKAIDVIDEAGARA--RLMP---VSKRKKTVNVADIESVVARI 433 (758)
T ss_pred ChHHHHHHHHHHHHhh--ccCc---ccccccccChhhHHHHHHHH
Confidence 4456677776543 2210 00112346777777666543
No 122
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.78 E-value=6.9e-18 Score=164.68 Aligned_cols=259 Identities=16% Similarity=0.208 Sum_probs=163.4
Q ss_pred HHHHHHHHhh-hhchHHHHHHHHHHHHHHhHHHHHHHcCCC-C-CCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC
Q 011578 198 MDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLK-V-GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP 274 (482)
Q Consensus 198 ~~~~~~~l~~-i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~ 274 (482)
...+...+++ ++|++.+++.+...+............... . ......++||+||||||||++|+++|+.++.
T Consensus 68 p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~----- 142 (413)
T TIGR00382 68 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNV----- 142 (413)
T ss_pred HHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCC-----
Confidence 3456666665 699999999887653221111110000000 0 0113468999999999999999999987764
Q ss_pred CCCeEEeeccccc-ccccccc-hhhHHHHH-------HhcCCcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhc
Q 011578 275 TDRVTEVQRTDLV-GEFVGHT-GPKTRRRI-------KEAEGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMD 342 (482)
Q Consensus 275 ~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~-------~~a~~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~ 342 (482)
+|..++++.+. ..|+|+. +..+...+ +.+.++||||||+|++++++.+.+ +-.+..+.+.||+.|+
T Consensus 143 --pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLe 220 (413)
T TIGR00382 143 --PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIE 220 (413)
T ss_pred --CeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhh
Confidence 78878877764 3588875 33344443 345678999999999998643221 1123367788888886
Q ss_pred CC---------------cEEEEEecCc----------------------------h---------hH------HHHHh--
Q 011578 343 GG---------------KVVVIFAGYS----------------------------E---------PM------KRVIA-- 362 (482)
Q Consensus 343 ~~---------------~~~vi~~~~~----------------------------~---------~~------~~~~~-- 362 (482)
+. ..++|.|++- + .. +++..
T Consensus 221 G~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g 300 (413)
T TIGR00382 221 GTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFG 300 (413)
T ss_pred ccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHh
Confidence 31 1245555332 0 00 00111
Q ss_pred cCccccCCCcceeeCCCCCHHHHHHHHHHH----HhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhH
Q 011578 363 SNEGFCRRVTKFFHFNDFNSEELAKILHIK----MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVD 438 (482)
Q Consensus 363 ~~~~l~~R~~~~i~~~~~~~~~~~~il~~~----l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 438 (482)
..|+|..|+|.++.|.+++.+++.+|+... +++..+.....+ +...+++++++.+++..+ .....+|.|+
T Consensus 301 ~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~g--i~L~~t~~a~~~Ia~~~~----~~~~GAR~Lr 374 (413)
T TIGR00382 301 LIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDN--VELDFEEEALKAIAKKAL----ERKTGARGLR 374 (413)
T ss_pred hHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCC--eEEEECHHHHHHHHHhCC----CCCCCchHHH
Confidence 239999999999999999999999999874 333322222223 445679999999999754 2356789999
Q ss_pred HHHHHHHHHhhhhhcCCCCChhhhhcccHHHHH
Q 011578 439 PMLVNARENLDLRLSFDCLDTDELRTITLEDLE 471 (482)
Q Consensus 439 ~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~ 471 (482)
.++++.+......+-... ......|+.+.+.
T Consensus 375 ~iie~~l~~~m~e~p~~~--~~~~v~i~~~~v~ 405 (413)
T TIGR00382 375 SIVEGLLLDVMFDLPSLE--DLEKVVITKETVL 405 (413)
T ss_pred HHHHHhhHHHHhhCCCCC--CCcEEEECHHHHc
Confidence 999998887644432210 1112356666554
No 123
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.78 E-value=1.7e-18 Score=156.29 Aligned_cols=191 Identities=19% Similarity=0.216 Sum_probs=140.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
+.++++.|++.+...|...+.. ...+++|||||||||||+.|+++|.+++... .....+.+.+
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~----------------~~lp~~LFyGPpGTGKTStalafar~L~~~~-~~~~rvl~ln 95 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR----------------RILPHYLFYGPPGTGKTSTALAFARALNCEQ-LFPCRVLELN 95 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh----------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCcc-ccccchhhhc
Confidence 5789999999999988875321 2457899999999999999999999997522 2333456677
Q ss_pred cccccccccccchhhHH-HHHHhc---------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEE
Q 011578 283 RTDLVGEFVGHTGPKTR-RRIKEA---------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVI 349 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~-~~~~~a---------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi 349 (482)
+++-.+..++....+.. ++.... ...|++|||+|.+....| ++|...||. ..+++.
T Consensus 96 aSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq-----------~aLrr~mE~~s~~trFiL 164 (346)
T KOG0989|consen 96 ASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQ-----------AALRRTMEDFSRTTRFIL 164 (346)
T ss_pred ccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHH-----------HHHHHHHhccccceEEEE
Confidence 77766665544322221 211111 127999999999998555 888888886 445666
Q ss_pred EecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 350 FAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
.|++...+ .+++.+|+ ..++|+++..+.+...|+.+..+++ .+++.+++..++...
T Consensus 165 Icnylsri------i~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~-----------v~~d~~al~~I~~~S------ 220 (346)
T KOG0989|consen 165 ICNYLSRI------IRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEG-----------VDIDDDALKLIAKIS------ 220 (346)
T ss_pred EcCChhhC------ChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhC-----------CCCCHHHHHHHHHHc------
Confidence 67666655 56678899 9999999999999999999888764 567889999998876
Q ss_pred cccCcchhHHHHHHHHH
Q 011578 430 REMNGGLVDPMLVNARE 446 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~ 446 (482)
.|.-|.....++.+..
T Consensus 221 -~GdLR~Ait~Lqsls~ 236 (346)
T KOG0989|consen 221 -DGDLRRAITTLQSLSL 236 (346)
T ss_pred -CCcHHHHHHHHHHhhc
Confidence 5666777777777655
No 124
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=6.5e-18 Score=166.19 Aligned_cols=189 Identities=15% Similarity=0.167 Sum_probs=137.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++++|++.+...|..++.. ...+..+||+||||||||++|+++|+.+.......
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~---------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKS---------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 5789999999999988876321 11233489999999999999999999886421110
Q ss_pred ---------CCCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 275 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 275 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
...+++++++.- .+...++++.+. .+..|+||||+|+|.. .+.+.||
T Consensus 80 sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NALL 142 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNALL 142 (484)
T ss_pred HHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHHHH
Confidence 112344443211 112234444332 2347999999999987 4569999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|++ +.+++|++|+.. ..+ .|++++|+ ..+.|.+++.+++.+.++..+.++. ..++++++
T Consensus 143 KtLEEPp~~viFILaTte~--~kI---~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Eg-----------i~~e~eAL 205 (484)
T PRK14956 143 KTLEEPPAHIVFILATTEF--HKI---PETILSRC-QDFIFKKVPLSVLQDYSEKLCKIEN-----------VQYDQEGL 205 (484)
T ss_pred HHhhcCCCceEEEeecCCh--hhc---cHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99998 778888876652 233 78899999 8899999999999999999887642 45688999
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..+++.. .|+.|+..++++++...
T Consensus 206 ~~Ia~~S-------~Gd~RdAL~lLeq~i~~ 229 (484)
T PRK14956 206 FWIAKKG-------DGSVRDMLSFMEQAIVF 229 (484)
T ss_pred HHHHHHc-------CChHHHHHHHHHHHHHh
Confidence 9888865 68889999999887653
No 125
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.77 E-value=8.9e-19 Score=136.09 Aligned_cols=89 Identities=42% Similarity=0.582 Sum_probs=61.0
Q ss_pred HHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccC
Q 011578 52 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIR 131 (482)
Q Consensus 52 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~ 131 (482)
||+||..|+.+++++|++ .+.+++. |+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+ .
T Consensus 1 L~~A~~~~~~~~~~~ll~----~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~ 68 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLE----KGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAA----E 68 (89)
T ss_dssp HHHHHHTTTHHHHHHHHH----TTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHH----H
T ss_pred CHHHHHcCCHHHHHHHHH----CcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHH----H
Confidence 577777777777777777 3444443 667777777777777777777777777777777777777777 6
Q ss_pred CChHHHHHHHhhCCCCccccC
Q 011578 132 SEDYATVKTLLEYNADCSAKD 152 (482)
Q Consensus 132 ~~~~~~v~~Ll~~gad~~~~d 152 (482)
.|+.+++++|+++|++++.+|
T Consensus 69 ~~~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 69 NGNLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp TTHHHHHHHHHHTTT-TTSS-
T ss_pred cCCHHHHHHHHHcCCCCCCcC
Confidence 667777777777777777654
No 126
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.77 E-value=1.5e-18 Score=182.70 Aligned_cols=102 Identities=27% Similarity=0.333 Sum_probs=95.6
Q ss_pred hHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhc
Q 011578 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 129 (482)
Q Consensus 50 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~ 129 (482)
++||.|+..|+.+++++|++ .|+++|.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~----~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~--- 156 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLT----GGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAE--- 156 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH---
Confidence 35889999999999999999 57889999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHhhC-------CCCccccCCCCCChh
Q 011578 130 IRSEDYATVKTLLEY-------NADCSAKDNEGKTPL 159 (482)
Q Consensus 130 ~~~~~~~~v~~Ll~~-------gad~~~~d~~g~tpl 159 (482)
..|+.+++++|+++ |++++..+..|.+|+
T Consensus 157 -~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~ 192 (664)
T PTZ00322 157 -ENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPS 192 (664)
T ss_pred -HCCcHHHHHHHHhCCCcccccCCCCCccccCCCCcc
Confidence 88999999999998 888888888888887
No 127
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=1.4e-17 Score=169.70 Aligned_cols=190 Identities=15% Similarity=0.183 Sum_probs=136.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC-------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 275 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~------- 275 (482)
+.|++++|++.+++.|..++.. ...+..+||+||+|||||++|++||+.++.......
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~---------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDG---------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 5789999999999999887321 112344699999999999999999999974221111
Q ss_pred ----------CCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 276 ----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 276 ----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
..+++++.++- .+...++++++.. +..|+||||+|+|.. ...|.||
T Consensus 78 sCr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NALL 140 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNAML 140 (830)
T ss_pred HHHHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHHHH
Confidence 12344443321 1123455555542 458999999999976 4459999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
+.|++ ..+++|++|+.. ..+ .+.+++|| ..|.|..++.+++.+.|+.++.++. ..++.+.+
T Consensus 141 KtLEEPP~~v~FILaTtd~--~KI---p~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~Eg-----------I~id~eAL 203 (830)
T PRK07003 141 KTLEEPPPHVKFILATTDP--QKI---PVTVLSRC-LQFNLKQMPAGHIVSHLERILGEER-----------IAFEPQAL 203 (830)
T ss_pred HHHHhcCCCeEEEEEECCh--hhc---cchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 456666654432 223 68899999 9999999999999999999887653 35688889
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
..+++.. .|+.|+..++++++....
T Consensus 204 ~lIA~~A-------~GsmRdALsLLdQAia~~ 228 (830)
T PRK07003 204 RLLARAA-------QGSMRDALSLTDQAIAYS 228 (830)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHhc
Confidence 8888865 577888888888877543
No 128
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.77 E-value=1.4e-18 Score=153.83 Aligned_cols=130 Identities=29% Similarity=0.367 Sum_probs=112.4
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..++.|.+||||||+.|+..+|+.|| ..|+.+|..+-- ..||||+|+.+||.++|+.|++ ..+++|+.|..|+|
T Consensus 29 ~gddhgfsplhwaakegh~aivemll-~rgarvn~tnmg-ddtplhlaaahghrdivqkll~----~kadvnavnehgnt 102 (448)
T KOG0195|consen 29 VGDDHGFSPLHWAAKEGHVAIVEMLL-SRGARVNSTNMG-DDTPLHLAAAHGHRDIVQKLLS----RKADVNAVNEHGNT 102 (448)
T ss_pred cccccCcchhhhhhhcccHHHHHHHH-hcccccccccCC-CCcchhhhhhcccHHHHHHHHH----HhcccchhhccCCC
Confidence 45677999999999999999999888 567778887753 6799999999999999999999 68999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHh----hCCCCcccc
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL----EYNADCSAK 151 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll----~~gad~~~~ 151 (482)
||||||.-|.-.+++-|+.+||-++..+++|.|||..|- ..+.+.|+ ++|-++|..
T Consensus 103 plhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak--------p~l~~~l~e~aek~gq~~nri 162 (448)
T KOG0195|consen 103 PLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK--------PMLKNTLLEIAEKHGQSPNRI 162 (448)
T ss_pred chhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc--------hHHHHHHHHHHHHhCCCCCcc
Confidence 999999999999999999999999999999999998775 33333333 457777743
No 129
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.76 E-value=1e-18 Score=188.35 Aligned_cols=125 Identities=30% Similarity=0.264 Sum_probs=102.2
Q ss_pred CCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCc--------------CCCChHHHHHHHcCCHHHHHHHHhCCCCcc
Q 011578 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN--------------MYGETPLHMAAKNGCNEAAKLLLAHGAFIE 112 (482)
Q Consensus 47 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~--------------~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~ 112 (482)
.|.||||+||..|+.++|++|+++ |++++.++ ..|.||||+|+..|+.+++++|+++|+|++
T Consensus 127 ~G~TpLhlAa~~~~~eiVklLL~~----GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin 202 (743)
T TIGR00870 127 PGITALHLAAHRQNYEIVKLLLER----GASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADIL 202 (743)
T ss_pred CCCcHHHHHHHhCCHHHHHHHHhC----CCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchh
Confidence 499999999999999999999994 56666442 368999999999999999999999999999
Q ss_pred ccccCCCcceeeehhhccCCC---------hHHHHHHHhhCCCCc-------cccCCCCCChhhhhhcCCCChHHHHHHH
Q 011578 113 AKANNGMTPLHLSVWYSIRSE---------DYATVKTLLEYNADC-------SAKDNEGKTPLDHLSNGPGSAKLRELLL 176 (482)
Q Consensus 113 ~~d~~g~tpLh~A~~~~~~~~---------~~~~v~~Ll~~gad~-------~~~d~~g~tpl~~~a~~~~~~~~~~lL~ 176 (482)
.+|..|+||||+|+ ..+ ...+.+++++.++++ +..|.+|.||||+ |+..++.++.++|+
T Consensus 203 ~~d~~g~T~Lh~A~----~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~-A~~~g~~~l~~lLL 277 (743)
T TIGR00870 203 TADSLGNTLLHLLV----MENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKL-AAKEGRIVLFRLKL 277 (743)
T ss_pred hHhhhhhHHHHHHH----hhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhh-hhhcCCccHHHHHH
Confidence 99999999999999 443 334666777665554 6779999999954 45567788888888
Q ss_pred hhhH
Q 011578 177 WHSE 180 (482)
Q Consensus 177 ~~~~ 180 (482)
+.+.
T Consensus 278 ~~~~ 281 (743)
T TIGR00870 278 AIKY 281 (743)
T ss_pred HHHH
Confidence 7543
No 130
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.76 E-value=1.3e-18 Score=145.99 Aligned_cols=122 Identities=27% Similarity=0.502 Sum_probs=102.4
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhc---C-CcEEEEecccccccC
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---E-GGILFVDEAYRLIPM 321 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a---~-~~vl~iDE~d~l~~~ 321 (482)
+||+||||||||++|+.+|+.++. +++.++++++.+.+.+++...+.++|.++ . ++||||||+|.+.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-------~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~ 73 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-------PFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPK 73 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-------EEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-------ccccccccccccccccccccccccccccccccccceeeeeccchhcccc
Confidence 689999999999999999998865 89999999999889999999999999875 3 699999999999987
Q ss_pred CCCCCChhHHHHHHHHHhhhcC-----CcEEEEEecCchhHHHHHhcCcccc-CCCcceeeCCC
Q 011578 322 QKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYSEPMKRVIASNEGFC-RRVTKFFHFND 379 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~l~~-----~~~~vi~~~~~~~~~~~~~~~~~l~-~R~~~~i~~~~ 379 (482)
.+.........+++.|+..++. +.+++|++++. .+.+ +|++. +||+..|+||.
T Consensus 74 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~--~~~i---~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 74 SQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS--PDKI---DPALLRSRFDRRIEFPL 132 (132)
T ss_dssp CSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS--GGGS---CHHHHSTTSEEEEEE-S
T ss_pred cccccccccccccceeeecccccccccccceeEEeeCC--hhhC---CHhHHhCCCcEEEEcCC
Confidence 7545667778889999999976 34777777555 3333 88899 99999999873
No 131
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.76 E-value=2.6e-18 Score=167.32 Aligned_cols=205 Identities=18% Similarity=0.256 Sum_probs=153.3
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++|+|.+....++.+..... +.....||+.|.+||||..+|++|++ ......+||+.+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~--------------A~tdstVLi~GESGTGKElfA~~IH~----~S~R~~~PFIai 302 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRI--------------AKTDSTVLILGESGTGKELFARAIHN----LSPRANGPFIAI 302 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhh--------------cCCCCcEEEecCCCccHHHHHHHHHh----cCcccCCCeEEE
Confidence 357889999988877777654333 46778999999999999999999999 445567899999
Q ss_pred eccccc-----ccccccch-----hh---HHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC----
Q 011578 282 QRTDLV-----GEFVGHTG-----PK---TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---- 344 (482)
Q Consensus 282 ~~~~~~-----~~~~g~~~-----~~---~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~---- 344 (482)
+|+.+. +.+||... .. -...|+.|.+|.||+|||..+...-| ..||..++++
T Consensus 303 NCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQ-----------aKLLRVLQEkei~r 371 (560)
T COG3829 303 NCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQ-----------AKLLRVLQEKEIER 371 (560)
T ss_pred ecccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHH-----------HHHHHHHhhceEEe
Confidence 998653 44555422 11 23578899999999999999987444 8899999863
Q ss_pred ---------cEEEEEecCchhHHHHHhc--CccccCCC-cceeeCCCCC--HHHHHHHHHHHHhccccccccccc-cccC
Q 011578 345 ---------KVVVIFAGYSEPMKRVIAS--NEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGF-KLHS 409 (482)
Q Consensus 345 ---------~~~vi~~~~~~~~~~~~~~--~~~l~~R~-~~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~-~~~~ 409 (482)
+|.||+||+.+..+.+... ...|..|+ -..|.+||+- ++++..+...++.+... .+ +...
T Consensus 372 vG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~-----~~~~~v~ 446 (560)
T COG3829 372 VGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSR-----RYGRNVK 446 (560)
T ss_pred cCCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHH-----HcCCCcc
Confidence 3689999888776544211 12333365 2234445554 48999999999987653 23 2234
Q ss_pred cccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 410 SCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
.+++++++.+.++.| |||.|+|+|++++++-
T Consensus 447 ~ls~~a~~~L~~y~W------PGNVRELeNviER~v~ 477 (560)
T COG3829 447 GLSPDALALLLRYDW------PGNVRELENVIERAVN 477 (560)
T ss_pred cCCHHHHHHHHhCCC------CchHHHHHHHHHHHHh
Confidence 589999999999999 9999999999999986
No 132
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.76 E-value=1e-18 Score=173.43 Aligned_cols=169 Identities=27% Similarity=0.225 Sum_probs=136.4
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
-++..|.|.||.||.+|+.+.++.|++. -..++..+.. |.+|||+|++.|+.++|+.|+.+ +..+|..+..|.|
T Consensus 44 ~qd~~gfTalhha~Lng~~~is~llle~-ea~ldl~d~k-g~~plhlaaw~g~~e~vkmll~q----~d~~na~~~e~~t 117 (854)
T KOG0507|consen 44 LQDYSGFTLLHHAVLNGQNQISKLLLDY-EALLDLCDTK-GILPLHLAAWNGNLEIVKMLLLQ----TDILNAVNIENET 117 (854)
T ss_pred ccCccchhHHHHHHhcCchHHHHHHhcc-hhhhhhhhcc-CcceEEehhhcCcchHHHHHHhc----ccCCCcccccCcC
Confidence 3455899999999999999999988754 4556666755 99999999999999999999984 5778999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCC--------ccccCCCCCChh
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD--------CSAKDNEGKTPL 159 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad--------~~~~d~~g~tpl 159 (482)
|||.|++.|+.+++.+|+.+|+|+-.+|..+.|+|-.|+ +.|..++++.|++..-+ -..++..+.+||
T Consensus 118 plhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~----qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~pl 193 (854)
T KOG0507|consen 118 PLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLAS----RFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPL 193 (854)
T ss_pred ccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHH----HhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCc
Confidence 999999999999999999999999999999999888888 77778888887765222 123445667788
Q ss_pred hhhhcCCCChHHHHHHHhhhHHHHHHhh
Q 011578 160 DHLSNGPGSAKLRELLLWHSEEQRKRRA 187 (482)
Q Consensus 160 ~~~a~~~~~~~~~~lL~~~~~~~~~~~~ 187 (482)
|.|..+++.+++..|+..|.+.+..+.
T Consensus 194 -Hlaakngh~~~~~~ll~ag~din~~t~ 220 (854)
T KOG0507|consen 194 -HLAAKNGHVECMQALLEAGFDINYTTE 220 (854)
T ss_pred -chhhhcchHHHHHHHHhcCCCcccccc
Confidence 445556677777788888877766553
No 133
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.76 E-value=1.6e-18 Score=186.70 Aligned_cols=95 Identities=32% Similarity=0.318 Sum_probs=77.3
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhCCCCccccc--------------cCCCcceeeehhhccCCChHHHHHHHhhCCCCc
Q 011578 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA--------------NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADC 148 (482)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d--------------~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~ 148 (482)
..|.||||+||..|+.++|++|+++|++++.++ .+|.||||+|+ ..|+.+++++|+++|+|+
T Consensus 126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa----~~~~~~iv~lLl~~gadi 201 (743)
T TIGR00870 126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAA----CLGSPSIVALLSEDPADI 201 (743)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHH----HhCCHHHHHHHhcCCcch
Confidence 468999999999999999999999999998653 35899999999 788999999999999999
Q ss_pred cccCCCCCChhhhhhcCCC--------ChHHHHHHHhhhHH
Q 011578 149 SAKDNEGKTPLDHLSNGPG--------SAKLRELLLWHSEE 181 (482)
Q Consensus 149 ~~~d~~g~tpl~~~a~~~~--------~~~~~~lL~~~~~~ 181 (482)
+.+|..|+||||+++..+. ...+..++...++.
T Consensus 202 n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~ 242 (743)
T TIGR00870 202 LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDK 242 (743)
T ss_pred hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999976666542 22345555555444
No 134
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.6e-17 Score=148.94 Aligned_cols=233 Identities=17% Similarity=0.310 Sum_probs=156.5
Q ss_pred HHHHHHhh-hhchHHHHHHHHHHHHHHhHHHHHHHcCCC-CCC-CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC
Q 011578 200 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLK-VGA-RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 276 (482)
Q Consensus 200 ~~~~~l~~-i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~ 276 (482)
++...+++ ++|++..|+.+.-.+... ..|-..... ... -.-.++||.||.|||||.||+.||+.+..
T Consensus 54 eik~~Ld~YVIGQe~AKKvLsVAVYNH---YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnV------- 123 (408)
T COG1219 54 EIKAHLDEYVIGQEQAKKVLSVAVYNH---YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNV------- 123 (408)
T ss_pred HHHHHhhhheecchhhhceeeeeehhH---HHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCC-------
Confidence 44455554 799999998875432211 111111100 001 13357999999999999999999999987
Q ss_pred CeEEeecccccc-cccccchhhH-HHHHH-------hcCCcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC-
Q 011578 277 RVTEVQRTDLVG-EFVGHTGPKT-RRRIK-------EAEGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG- 343 (482)
Q Consensus 277 ~~~~~~~~~~~~-~~~g~~~~~~-~~~~~-------~a~~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~- 343 (482)
||...++..+.. .|+|+...++ .+++. .|+.|||+|||||+++.+..+-+ +-.+..+..+||..+++
T Consensus 124 PFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 124 PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred CeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 888888888764 4999865554 45543 45669999999999998654322 22455777889999986
Q ss_pred ----------------------CcEEEEEecCchhHHHHHhcC-------------------------------------
Q 011578 344 ----------------------GKVVVIFAGYSEPMKRVIASN------------------------------------- 364 (482)
Q Consensus 344 ----------------------~~~~vi~~~~~~~~~~~~~~~------------------------------------- 364 (482)
..+.+|+.+--..++.++...
T Consensus 204 vasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFG 283 (408)
T COG1219 204 VASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFG 283 (408)
T ss_pred eeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcC
Confidence 124555544323333222111
Q ss_pred --ccccCCCcceeeCCCCCHHHHHHHHH---HHHhccccccccccc-cccCcccHHHHHHHHHHHhhHhhccccCcchhH
Q 011578 365 --EGFCRRVTKFFHFNDFNSEELAKILH---IKMNNQTEDSLLYGF-KLHSSCSMDAIAALIEKETTEKQRREMNGGLVD 438 (482)
Q Consensus 365 --~~l~~R~~~~i~~~~~~~~~~~~il~---~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 438 (482)
|.|.+|++.+-.+..+|.+++.+||. ..+-++.+..+ ++ .+.-.+++++|.++++... .+...+|.+|
T Consensus 284 LIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf--~~d~V~L~F~~~AL~~IA~~A~----~rkTGARGLR 357 (408)
T COG1219 284 LIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLF--EMDGVELEFTEEALKAIAKKAI----ERKTGARGLR 357 (408)
T ss_pred CcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHh--cccCceEEEcHHHHHHHHHHHH----HhccchhHHH
Confidence 99999999999999999999999984 22222222111 12 3445679999999998764 4566789999
Q ss_pred HHHHHHHHHh
Q 011578 439 PMLVNARENL 448 (482)
Q Consensus 439 ~~~~~a~~~~ 448 (482)
.+++..+...
T Consensus 358 sI~E~~lld~ 367 (408)
T COG1219 358 SIIEELLLDV 367 (408)
T ss_pred HHHHHHHHHH
Confidence 9999987764
No 135
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=3.7e-17 Score=163.75 Aligned_cols=189 Identities=20% Similarity=0.216 Sum_probs=133.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++++|++.+++.|...+.. ...+..+||+||||||||++|+++|+.+.......
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~---------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKK---------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 5688999999998888765321 12344589999999999999999999886421110
Q ss_pred ---------CCCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 275 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 275 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
...+++++++.- .....++++.+. ....||||||+|.+.. ..++.|+
T Consensus 76 ~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~LL 138 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNALL 138 (472)
T ss_pred HHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHHHH
Confidence 113445544321 112234443332 2347999999999975 4458899
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..++. +.+++|++++... .+ .+++.+|+ ..+.|.+++.+++..+++..+.... ..++++++
T Consensus 139 k~LE~p~~~vv~Ilattn~~--kl---~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~eg-----------i~i~~eal 201 (472)
T PRK14962 139 KTLEEPPSHVVFVLATTNLE--KV---PPTIISRC-QVIEFRNISDELIIKRLQEVAEAEG-----------IEIDREAL 201 (472)
T ss_pred HHHHhCCCcEEEEEEeCChH--hh---hHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 6677776655321 23 78899999 7999999999999999998887542 35688999
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++... .++.|.+.+.++.+...
T Consensus 202 ~~Ia~~s-------~GdlR~aln~Le~l~~~ 225 (472)
T PRK14962 202 SFIAKRA-------SGGLRDALTMLEQVWKF 225 (472)
T ss_pred HHHHHHh-------CCCHHHHHHHHHHHHHh
Confidence 9998865 57778888888876543
No 136
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.75 E-value=9.1e-19 Score=159.83 Aligned_cols=145 Identities=28% Similarity=0.336 Sum_probs=122.3
Q ss_pred CCHHHHHHHHhhCC--------CCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHc
Q 011578 24 GDLLAFQRLLRENP--------SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN 95 (482)
Q Consensus 24 g~~~~v~~ll~~~~--------~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~ 95 (482)
-+.+.|...|.... -.+|..|.+ |+|+||||+.++++++|+.||+. .-++++.+|+-|+||+++++..
T Consensus 237 a~pe~V~~~l~~f~als~~lL~yvVNlaDsN-GNTALHYsVSHaNF~VV~~LLDS---gvC~VD~qNrAGYtpiMLaALA 312 (452)
T KOG0514|consen 237 SDPEQVEDYLAYFEALSPPLLEYVVNLADSN-GNTALHYAVSHANFDVVSILLDS---GVCDVDQQNRAGYTPVMLAALA 312 (452)
T ss_pred CCHHHHHHHHHHHHhcChHHHHHHhhhhcCC-CCeeeeeeecccchHHHHHHhcc---CcccccccccccccHHHHHHHH
Confidence 45667776654321 235777775 99999999999999999999995 5689999999999999999864
Q ss_pred -----CCHHHHHHHHhCCCCccccc-cCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCCh
Q 011578 96 -----GCNEAAKLLLAHGAFIEAKA-NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 169 (482)
Q Consensus 96 -----g~~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~ 169 (482)
.+.++|.-|...| |+|++- ..|+|+|++|+ ++|+.++|+.||.+|||+|++|.+|-|+| +.|+..|+.
T Consensus 313 ~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAV----SHGr~d~vk~LLacgAdVNiQDdDGSTAL-MCA~EHGhk 386 (452)
T KOG0514|consen 313 KLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAV----SHGRVDMVKALLACGADVNIQDDDGSTAL-MCAAEHGHK 386 (452)
T ss_pred hhcchhhHHHHHHHHhcc-Ccchhhhhhcchhhhhhh----hcCcHHHHHHHHHccCCCccccCCccHHH-hhhhhhChH
Confidence 4567888888876 677654 57999999999 99999999999999999999999999999 677778899
Q ss_pred HHHHHHHhh
Q 011578 170 KLRELLLWH 178 (482)
Q Consensus 170 ~~~~lL~~~ 178 (482)
+++++|+..
T Consensus 387 EivklLLA~ 395 (452)
T KOG0514|consen 387 EIVKLLLAV 395 (452)
T ss_pred HHHHHHhcc
Confidence 999998854
No 137
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.75 E-value=4.5e-17 Score=173.54 Aligned_cols=219 Identities=22% Similarity=0.293 Sum_probs=153.6
Q ss_pred HHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCe
Q 011578 200 ELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV 278 (482)
Q Consensus 200 ~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~ 278 (482)
.+...+. .++|++.+++.+...+... ..+...+..+..+++|+||||||||++|++||+.++. ++
T Consensus 447 ~l~~~l~~~v~GQ~~ai~~l~~~i~~~-------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~-------~~ 512 (731)
T TIGR02639 447 NLEKNLKAKIFGQDEAIDSLVSSIKRS-------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV-------HL 512 (731)
T ss_pred HHHHHHhcceeCcHHHHHHHHHHHHHH-------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC-------Ce
Confidence 3444444 4789998888887764322 2333222234456899999999999999999998854 66
Q ss_pred EEeecccccc------------cccccc-hhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc
Q 011578 279 TEVQRTDLVG------------EFVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK 345 (482)
Q Consensus 279 ~~~~~~~~~~------------~~~g~~-~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 345 (482)
+.++.+++.. .|+|.. +..+.+.++..+.+||||||||++++ .+.+.|++.|+++.
T Consensus 513 ~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~-----------~~~~~Ll~~ld~g~ 581 (731)
T TIGR02639 513 ERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP-----------DIYNILLQVMDYAT 581 (731)
T ss_pred EEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH-----------HHHHHHHHhhccCe
Confidence 7776655321 245542 34567777778889999999999988 56699999998752
Q ss_pred -------------EEEEEecCchh--H----------------HHHH--hcCccccCCCcceeeCCCCCHHHHHHHHHHH
Q 011578 346 -------------VVVIFAGYSEP--M----------------KRVI--ASNEGFCRRVTKFFHFNDFNSEELAKILHIK 392 (482)
Q Consensus 346 -------------~~vi~~~~~~~--~----------------~~~~--~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 392 (482)
.++|+|++... + ...+ .-.|+|++|||.+|.|.+++.+++.+|++..
T Consensus 582 ~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~ 661 (731)
T TIGR02639 582 LTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKF 661 (731)
T ss_pred eecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHH
Confidence 35666654211 0 0000 0158999999999999999999999999999
Q ss_pred HhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhh
Q 011578 393 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD 449 (482)
Q Consensus 393 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 449 (482)
+.+..++....++ ...++++++..++...+ ....++|.++..++.......
T Consensus 662 L~~l~~~l~~~~~--~l~i~~~a~~~La~~~~----~~~~GaR~l~r~i~~~~~~~l 712 (731)
T TIGR02639 662 VDELSKQLNEKNI--KLELTDDAKKYLAEKGY----DEEFGARPLARVIQEEIKKPL 712 (731)
T ss_pred HHHHHHHHHhCCC--eEEeCHHHHHHHHHhCC----CcccCchHHHHHHHHHhHHHH
Confidence 9876544333333 45678999999998643 224568999999888777653
No 138
>PLN03025 replication factor C subunit; Provisional
Probab=99.75 E-value=4.2e-17 Score=157.53 Aligned_cols=182 Identities=20% Similarity=0.237 Sum_probs=128.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..+++++|++++.+.|+.+.. ....++++|+||||||||++|+++|+++...+. ...+++++
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~----------------~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~--~~~~~eln 71 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIAR----------------DGNMPNLILSGPPGTGKTTSILALAHELLGPNY--KEAVLELN 71 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHh----------------cCCCceEEEECCCCCCHHHHHHHHHHHHhcccC--ccceeeec
Confidence 468899999999998887632 123457999999999999999999999854221 23467777
Q ss_pred cccccccccccchhhHHHHH---Hh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEE
Q 011578 283 RTDLVGEFVGHTGPKTRRRI---KE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVI 349 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~---~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi 349 (482)
+++..+. ..+++.+ .+ ....|++|||+|.+....| +.|+..|+. ...+++
T Consensus 72 ~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq-----------~aL~~~lE~~~~~t~~il 134 (319)
T PLN03025 72 ASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQ-----------QALRRTMEIYSNTTRFAL 134 (319)
T ss_pred ccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHH-----------HHHHHHHhcccCCceEEE
Confidence 7654221 1223222 11 2347999999999987544 566666654 344444
Q ss_pred EecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 350 FAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
.+++...+ .|++++|+ ..++|++|+.+++...++..++++. ..++++++..++...
T Consensus 135 ~~n~~~~i------~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~eg-----------i~i~~~~l~~i~~~~------ 190 (319)
T PLN03025 135 ACNTSSKI------IEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEK-----------VPYVPEGLEAIIFTA------ 190 (319)
T ss_pred EeCCcccc------chhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc------
Confidence 45443322 67889998 7899999999999999999887753 356788898888765
Q ss_pred cccCcchhHHHHHHH
Q 011578 430 REMNGGLVDPMLVNA 444 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a 444 (482)
.++.|.+.+.++.+
T Consensus 191 -~gDlR~aln~Lq~~ 204 (319)
T PLN03025 191 -DGDMRQALNNLQAT 204 (319)
T ss_pred -CCCHHHHHHHHHHH
Confidence 56777777777743
No 139
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=4.2e-17 Score=164.63 Aligned_cols=189 Identities=18% Similarity=0.219 Sum_probs=136.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC-------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 275 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~------- 275 (482)
..|++++|++.+++.|..++.. ...+..+||+||||||||++|+++|+.+........
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~---------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER---------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 5789999999999999887431 123456799999999999999999999864221111
Q ss_pred ----------CCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 276 ----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 276 ----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
..++++++++- .....++++++.. +..|+||||+|+|.+ ...+.|+
T Consensus 77 sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A~NALL 139 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HSFNALL 139 (702)
T ss_pred HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HHHHHHH
Confidence 13444444321 1123455555432 347999999999987 3458899
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|++ +.+.+|++++.... + .+.+++|+ .++.|.+++.+++.+.++..++++. ..++.+++
T Consensus 140 KtLEEPP~~v~FILaTtd~~k--I---p~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEg-----------I~id~eAL 202 (702)
T PRK14960 140 KTLEEPPEHVKFLFATTDPQK--L---PITVISRC-LQFTLRPLAVDEITKHLGAILEKEQ-----------IAADQDAI 202 (702)
T ss_pred HHHhcCCCCcEEEEEECChHh--h---hHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 55666666543322 2 56778899 8999999999999999999988753 45788999
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++... .|+.|.+.++++.+...
T Consensus 203 ~~IA~~S-------~GdLRdALnLLDQaIay 226 (702)
T PRK14960 203 WQIAESA-------QGSLRDALSLTDQAIAY 226 (702)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 9998865 57888888888877653
No 140
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=2.4e-17 Score=166.00 Aligned_cols=188 Identities=15% Similarity=0.210 Sum_probs=133.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCC-----CCC--
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI-----LPT-- 275 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~-----~~~-- 275 (482)
..|++++|++.+++.|...+..- ..+..+||+||+|||||++|+.||+.+..... ...
T Consensus 13 qtFddVIGQe~vv~~L~~al~~g---------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQ---------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhC---------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 57899999999999998874311 12344699999999999999999999975211 000
Q ss_pred ---------------CCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHH
Q 011578 276 ---------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEA 333 (482)
Q Consensus 276 ---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~ 333 (482)
..+++++.++- .+...++++++. .+..|+||||+|+|.. ..
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-----------~A 140 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-----------HA 140 (700)
T ss_pred CcccHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------HH
Confidence 12344443311 112335555443 2347999999999987 45
Q ss_pred HHHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcc
Q 011578 334 LEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 411 (482)
Q Consensus 334 ~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~ 411 (482)
.|.||+.||+ +.+++|++|+... .+ .+.+++|| ..+.|..++.+++.+.++.++.++. ..+
T Consensus 141 aNALLKTLEEPP~~v~FILaTtep~--kL---lpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Eg-----------i~~ 203 (700)
T PRK12323 141 FNAMLKTLEEPPEHVKFILATTDPQ--KI---PVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEG-----------IAH 203 (700)
T ss_pred HHHHHHhhccCCCCceEEEEeCChH--hh---hhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcC-----------CCC
Confidence 5999999998 5666666655432 22 68899999 9999999999999999999887642 345
Q ss_pred cHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 412 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 412 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
+.+++..++... .|+.|+..++++++..
T Consensus 204 d~eAL~~IA~~A-------~Gs~RdALsLLdQaia 231 (700)
T PRK12323 204 EVNALRLLAQAA-------QGSMRDALSLTDQAIA 231 (700)
T ss_pred CHHHHHHHHHHc-------CCCHHHHHHHHHHHHH
Confidence 777887777654 5777888888877654
No 141
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.74 E-value=8.2e-18 Score=161.87 Aligned_cols=184 Identities=17% Similarity=0.228 Sum_probs=136.5
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-----ccccchh-------hHHHHHHhcCCc
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----FVGHTGP-------KTRRRIKEAEGG 308 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~-------~~~~~~~~a~~~ 308 (482)
....+|+++|++||||+++|++|+... .....+|+.++|+.+... .+|+... .....|+.+.+|
T Consensus 20 ~~~~pVLI~GE~GtGK~~lAr~iH~~s----~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gG 95 (329)
T TIGR02974 20 PLDRPVLIIGERGTGKELIAARLHYLS----KRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGG 95 (329)
T ss_pred CCCCCEEEECCCCChHHHHHHHHHHhc----CccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCCC
Confidence 456789999999999999999999844 335579999999865332 3443211 123458888999
Q ss_pred EEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-------------EEEEEecCchhHHHHHh--cCccccCCC-c
Q 011578 309 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-------------VVVIFAGYSEPMKRVIA--SNEGFCRRV-T 372 (482)
Q Consensus 309 vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------------~~vi~~~~~~~~~~~~~--~~~~l~~R~-~ 372 (482)
+||||||+.|....| ..|+..++.+. +.+|++++.+....... -.+.|..|+ .
T Consensus 96 tL~Ldei~~L~~~~Q-----------~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~ 164 (329)
T TIGR02974 96 TLFLDELATASLLVQ-----------EKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAF 164 (329)
T ss_pred EEEeCChHhCCHHHH-----------HHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcc
Confidence 999999999998555 77888886543 57787776554322211 135667788 5
Q ss_pred ceeeCCCCC--HHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 373 KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 373 ~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
..|.+|++. .+++..+++.++.+.... ++......++++++..+..+.| +||.|+|++++++++...
T Consensus 165 ~~i~lPpLReR~eDI~~L~~~fl~~~~~~---~~~~~~~~ls~~a~~~L~~y~W------PGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 165 DVITLPPLRERQEDIMLLAEHFAIRMARE---LGLPLFPGFTPQAREQLLEYHW------PGNVRELKNVVERSVYRH 233 (329)
T ss_pred hhcCCCchhhhhhhHHHHHHHHHHHHHHH---hCCCCCCCcCHHHHHHHHhCCC------CchHHHHHHHHHHHHHhC
Confidence 688999998 589999999998876431 1222214789999999999999 999999999999998764
No 142
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.74 E-value=7.8e-18 Score=164.47 Aligned_cols=207 Identities=21% Similarity=0.252 Sum_probs=158.4
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
....++|.+...+++++.+..+ +....+||++|++||||..+||+|++ .+....+||+.++|
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv--------------A~s~a~VLI~GESGtGKElvAr~IH~----~S~R~~~PFVavNc 200 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV--------------APSDASVLITGESGTGKELVARAIHQ----ASPRAKGPFIAVNC 200 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCcHHHHHHHHHh----hCcccCCCceeeec
Confidence 4557899999999998876655 45778999999999999999999998 55566789999999
Q ss_pred cccc-----ccccccchh-----h--HHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-------
Q 011578 284 TDLV-----GEFVGHTGP-----K--TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 344 (482)
Q Consensus 284 ~~~~-----~~~~g~~~~-----~--~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~------- 344 (482)
..+. +..+|+... . -...|+.|.+|+||||||..+...-| ..||..++++
T Consensus 201 aAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q-----------~kLLRvLqe~~~~rvG~ 269 (464)
T COG2204 201 AAIPENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQ-----------VKLLRVLQEREFERVGG 269 (464)
T ss_pred ccCCHHHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHH-----------HHHHHHHHcCeeEecCC
Confidence 8654 347776332 2 22478999999999999999987544 8899998863
Q ss_pred ------cEEEEEecCchhHHHHHhc--CccccCCC-cceeeCCCCC--HHHHHHHHHHHHhccccccccccccccCcccH
Q 011578 345 ------KVVVIFAGYSEPMKRVIAS--NEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSM 413 (482)
Q Consensus 345 ------~~~vi~~~~~~~~~~~~~~--~~~l~~R~-~~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 413 (482)
++.||+||+.+....+... .+.|..|+ -..|++|++- .|++..+++.++++.... +| .-...++.
T Consensus 270 ~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~---~~-~~~~~~s~ 345 (464)
T COG2204 270 NKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAE---LG-RPPKGFSP 345 (464)
T ss_pred CcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHH---cC-CCCCCCCH
Confidence 3578888777665544211 24445566 3345555555 399999999999987653 22 33468999
Q ss_pred HHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhh
Q 011578 414 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD 449 (482)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 449 (482)
++++.+..+.| |||.|+|+|++++++.-..
T Consensus 346 ~a~~~L~~y~W------PGNVREL~N~ver~~il~~ 375 (464)
T COG2204 346 EALAALLAYDW------PGNVRELENVVERAVILSE 375 (464)
T ss_pred HHHHHHHhCCC------ChHHHHHHHHHHHHHhcCC
Confidence 99999999999 9999999999999987653
No 143
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.74 E-value=1.4e-17 Score=159.76 Aligned_cols=208 Identities=21% Similarity=0.294 Sum_probs=160.3
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...+++++|.+..-+.+++.+..+ +....+||++|++||||+.+|+.|+..... . ..+||+.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~--------------ap~~~~vLi~GetGtGKel~A~~iH~~s~r--~-~~~PFI~~ 136 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAY--------------APSGLPVLIIGETGTGKELFARLIHALSAR--R-AEAPFIAF 136 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhh--------------CCCCCcEEEecCCCccHHHHHHHHHHhhhc--c-cCCCEEEE
Confidence 356778899887777777665442 356788999999999999999999943332 1 67899999
Q ss_pred eccccccc-----cccc-------chhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-----
Q 011578 282 QRTDLVGE-----FVGH-------TGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----- 344 (482)
Q Consensus 282 ~~~~~~~~-----~~g~-------~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~----- 344 (482)
+|+.+... .+|+ ....-..+|+.|.+|+||+|||..|.+..| ..|+..||++
T Consensus 137 NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q-----------~kLl~~le~g~~~rv 205 (403)
T COG1221 137 NCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQ-----------EKLLRVLEEGEYRRV 205 (403)
T ss_pred EHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHH-----------HHHHHHHHcCceEec
Confidence 99875432 4443 222334689999999999999999999666 8888888873
Q ss_pred --------cEEEEEecCchhHHHHHhcCccccC-CCcceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccH
Q 011578 345 --------KVVVIFAGYSEPMKRVIASNEGFCR-RVTKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSM 413 (482)
Q Consensus 345 --------~~~vi~~~~~~~~~~~~~~~~~l~~-R~~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 413 (482)
+|.+|+||+.+.-..++.. ..|.+ |+..+|.+|++.. +|+..+++.+++.+..+ .+..+... ++
T Consensus 206 G~~~~~~~dVRli~AT~~~l~~~~~~g-~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~---l~~~~~~~-~~ 280 (403)
T COG1221 206 GGSQPRPVDVRLICATTEDLEEAVLAG-ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARR---LGLPLSVD-SP 280 (403)
T ss_pred CCCCCcCCCceeeeccccCHHHHHHhh-cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHH---cCCCCCCC-CH
Confidence 4689999988887766543 35666 7789999999985 88888899999888753 23333332 36
Q ss_pred HHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 414 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
+++..+..+.| +||.|+++|+|++++...
T Consensus 281 ~a~~~L~~y~~------pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 281 EALRALLAYDW------PGNIRELKNLVERAVAQA 309 (403)
T ss_pred HHHHHHHhCCC------CCcHHHHHHHHHHHHHHh
Confidence 89999999998 999999999999999886
No 144
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=8.4e-17 Score=160.31 Aligned_cols=189 Identities=17% Similarity=0.195 Sum_probs=139.0
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--------- 273 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~--------- 273 (482)
..|++++|++.+++.+...+.. ...+.++||+||||+|||++|+.+|+.+......
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~---------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTL---------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 5789999999999988865321 1245579999999999999999999988642211
Q ss_pred --------CCCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 274 --------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 274 --------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
....++++++++-. +...++++++.+ +..|++|||+|.|.. .+.+.|+
T Consensus 75 ~C~~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaLL 137 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNALL 137 (491)
T ss_pred HHHHHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHHH
Confidence 12345666654311 223455555443 458999999999976 4559999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|++ ..+++|++++.. ..+ .+.+++|+ ..+.|.+++.+++...++..++++. ..++++++
T Consensus 138 K~LEePp~~v~fIlatte~--~Kl---~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Eg-----------i~i~~eAL 200 (491)
T PRK14964 138 KTLEEPAPHVKFILATTEV--KKI---PVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKEN-----------IEHDEESL 200 (491)
T ss_pred HHHhCCCCCeEEEEEeCCh--HHH---HHHHHHhh-eeeecccccHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 556666665432 223 56788899 8899999999999999999888753 35688999
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..+++.. .|+.|++.+.++.+...
T Consensus 201 ~lIa~~s-------~GslR~alslLdqli~y 224 (491)
T PRK14964 201 KLIAENS-------SGSMRNALFLLEQAAIY 224 (491)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 9888865 57788888888887754
No 145
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.73 E-value=1.8e-17 Score=128.78 Aligned_cols=89 Identities=40% Similarity=0.538 Sum_probs=79.4
Q ss_pred hHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcC
Q 011578 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG 96 (482)
Q Consensus 17 l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g 96 (482)
||+||+.|+.+.++.|+. .+..++. |.||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|
T Consensus 1 L~~A~~~~~~~~~~~ll~-~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~ 70 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLE-KGADINL-----GNTALHYAAENGNLEIVKLLLE----NGADINSQDKNGNTALHYAAENG 70 (89)
T ss_dssp HHHHHHTTTHHHHHHHHH-TTSTTTS-----SSBHHHHHHHTTTHHHHHHHHH----TTTCTT-BSTTSSBHHHHHHHTT
T ss_pred CHHHHHcCCHHHHHHHHH-CcCCCCC-----CCCHHHHHHHcCCHHHHHHHHH----hcccccccCCCCCCHHHHHHHcC
Confidence 799999999999999997 4455544 7899999999999999999999 68899999999999999999999
Q ss_pred CHHHHHHHHhCCCCccccc
Q 011578 97 CNEAAKLLLAHGAFIEAKA 115 (482)
Q Consensus 97 ~~~~v~~Ll~~ga~~~~~d 115 (482)
+.+++++|+++|++++.+|
T Consensus 71 ~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 71 NLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp HHHHHHHHHHTTT-TTSS-
T ss_pred CHHHHHHHHHcCCCCCCcC
Confidence 9999999999999999875
No 146
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=9.3e-17 Score=162.57 Aligned_cols=189 Identities=15% Similarity=0.177 Sum_probs=135.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 276 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~------ 276 (482)
..|++++|++.+++.|..++..- ..+..+||+||||||||++|+++|+.+.........
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~---------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQ---------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC---------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 57899999999999998874311 133447999999999999999999999753221111
Q ss_pred -----------CeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 277 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 277 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
.++++++++- .....++++++.. +..|+||||+|+|.+ .+.+.|+
T Consensus 78 ~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-----------~a~naLL 140 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-----------HSFNALL 140 (509)
T ss_pred HHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-----------HHHHHHH
Confidence 2455554321 1223355555432 347999999999987 4458999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|++ ..+++|++|+.. ..+ .+.+++|+ ..++|.+++.+++...++..++++. ..++++++
T Consensus 141 k~LEepp~~~~fIlattd~--~kl---~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~eg-----------i~~~~~al 203 (509)
T PRK14958 141 KTLEEPPSHVKFILATTDH--HKL---PVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEEN-----------VEFENAAL 203 (509)
T ss_pred HHHhccCCCeEEEEEECCh--Hhc---hHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 456666665432 222 56689999 8999999999999999999888753 34677888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++... .|+.|++.+.++.+...
T Consensus 204 ~~ia~~s-------~GslR~al~lLdq~ia~ 227 (509)
T PRK14958 204 DLLARAA-------NGSVRDALSLLDQSIAY 227 (509)
T ss_pred HHHHHHc-------CCcHHHHHHHHHHHHhc
Confidence 8888765 57788888998877543
No 147
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=4.9e-17 Score=168.91 Aligned_cols=187 Identities=16% Similarity=0.206 Sum_probs=133.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCc-eeEecCCCCchHHHHHHHHHHHHHcCCCCCCC----
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILPTDR---- 277 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~~~~~~~~~~~~---- 277 (482)
..|++++|++.+++.|+..+. .....| +||+||||||||++||++|+.+.........+
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~----------------~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALT----------------QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHH----------------hCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 578999999999999887632 123345 58999999999999999999987532111111
Q ss_pred -------------eEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHH
Q 011578 278 -------------VTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEI 337 (482)
Q Consensus 278 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~l 337 (482)
++++++++ .. ....++++.+. .+..|+||||+|+|.. .+.+.|
T Consensus 77 ~sC~~i~~g~~~DviEidAas----~~--kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~-----------eAqNAL 139 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAAS----RT--KVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR-----------SSFNAL 139 (944)
T ss_pred hHHHHHhcCCCceEEEecccc----cc--CHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH-----------HHHHHH
Confidence 22232221 01 11234444432 2347999999999987 555999
Q ss_pred HhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHH
Q 011578 338 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 415 (482)
Q Consensus 338 l~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 415 (482)
|..|++ +.+++|++|+.... + .+.+++|+ .+++|.+++.+++...++..+.... ..++.++
T Consensus 140 LKtLEEPP~~vrFILaTTe~~k--L---l~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~Eg-----------I~~edeA 202 (944)
T PRK14949 140 LKTLEEPPEHVKFLLATTDPQK--L---PVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQ-----------LPFEAEA 202 (944)
T ss_pred HHHHhccCCCeEEEEECCCchh--c---hHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence 999997 66767776554332 2 57789999 9999999999999999999887642 4567888
Q ss_pred HHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 416 IAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
+..++... .|+.|.+.++++.+..
T Consensus 203 L~lIA~~S-------~Gd~R~ALnLLdQala 226 (944)
T PRK14949 203 LTLLAKAA-------NGSMRDALSLTDQAIA 226 (944)
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHH
Confidence 88888764 5777888888887764
No 148
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.73 E-value=4.1e-17 Score=175.75 Aligned_cols=193 Identities=21% Similarity=0.239 Sum_probs=146.5
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc---CCCCCCCeEE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTE 280 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~---~~~~~~~~~~ 280 (482)
.++.++|.+...+++.+++. .....+++|+||||||||++|+.+|..+... .......++.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~----------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~ 240 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILG----------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT 240 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHc----------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 46678999988888887632 2255689999999999999999999988531 1223457888
Q ss_pred eeccccc--ccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCch
Q 011578 281 VQRTDLV--GEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 355 (482)
Q Consensus 281 ~~~~~~~--~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~ 355 (482)
++.+.+. .+|.|+.+.+++++|+.+ .++||||||+|.+....+..++ ..+.+.|...+..|.+.+|++||.+
T Consensus 241 l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~---~~~a~lLkp~l~rg~l~~IgaTt~~ 317 (821)
T CHL00095 241 LDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA---IDAANILKPALARGELQCIGATTLD 317 (821)
T ss_pred eeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc---ccHHHHhHHHHhCCCcEEEEeCCHH
Confidence 8887765 468899999999999764 3479999999999876543222 2455677788899999999999999
Q ss_pred hHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHH
Q 011578 356 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 423 (482)
Q Consensus 356 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (482)
++...++.+|++.+|| ..|.++.|+.++...|++.......+ .....++++++..+....
T Consensus 318 ey~~~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~e~-------~~~v~i~deal~~i~~ls 377 (821)
T CHL00095 318 EYRKHIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSRYEK-------HHNLSISDKALEAAAKLS 377 (821)
T ss_pred HHHHHHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHh
Confidence 9988788899999999 57899999999999999876544321 111225667766655533
No 149
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=1.9e-16 Score=159.08 Aligned_cols=190 Identities=18% Similarity=0.260 Sum_probs=137.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC-------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 275 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~------- 275 (482)
..|++++|++.+.+.|...+.. ...+..+||+||||||||++|+++|+.+........
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~---------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILN---------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 5788999999999988765321 124568999999999999999999999975321111
Q ss_pred --------------CCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHH
Q 011578 276 --------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEAL 334 (482)
Q Consensus 276 --------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~ 334 (482)
..++++++++- .+...++++++.+ +..|++|||+|.+.. ...
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas~------~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~ 145 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAASK------TSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAF 145 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccCC------CCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHH
Confidence 12333333210 1234456666544 348999999999975 456
Q ss_pred HHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCccc
Q 011578 335 EEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCS 412 (482)
Q Consensus 335 ~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~ 412 (482)
+.|+..|++ ..+++|++|+.. ..+ .+++++|+ ..++|.+++.+++..+++..++++. ..++
T Consensus 146 naLLk~LEepp~~~vfI~aTte~--~kI---~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~eg-----------i~ie 208 (507)
T PRK06645 146 NALLKTLEEPPPHIIFIFATTEV--QKI---PATIISRC-QRYDLRRLSFEEIFKLLEYITKQEN-----------LKTD 208 (507)
T ss_pred HHHHHHHhhcCCCEEEEEEeCCh--HHh---hHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcC-----------CCCC
Confidence 889999986 556666665432 223 67789999 7899999999999999999998753 3567
Q ss_pred HHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 413 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 413 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
++++..++... .|+.|++.+.++.+....
T Consensus 209 ~eAL~~Ia~~s-------~GslR~al~~Ldkai~~~ 237 (507)
T PRK06645 209 IEALRIIAYKS-------EGSARDAVSILDQAASMS 237 (507)
T ss_pred HHHHHHHHHHc-------CCCHHHHHHHHHHHHHhh
Confidence 88888888764 688899999999886653
No 150
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.73 E-value=3.1e-17 Score=157.56 Aligned_cols=210 Identities=22% Similarity=0.229 Sum_probs=156.4
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeE
Q 011578 200 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 279 (482)
Q Consensus 200 ~~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 279 (482)
+......+|+|.+....++.+.+..+ +.....||+.|.+||||..+||+|++ .+.....||+
T Consensus 217 ~~~~~~~~iIG~S~am~~ll~~i~~V--------------A~Sd~tVLi~GETGtGKElvAraIH~----~S~R~~kPfV 278 (550)
T COG3604 217 EVVLEVGGIIGRSPAMRQLLKEIEVV--------------AKSDSTVLIRGETGTGKELVARAIHQ----LSPRRDKPFV 278 (550)
T ss_pred chhcccccceecCHHHHHHHHHHHHH--------------hcCCCeEEEecCCCccHHHHHHHHHh----hCcccCCCce
Confidence 33456778999999888888876655 45778999999999999999999999 4555677999
Q ss_pred Eeeccccc-----ccccccchhhHH-------HHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC---
Q 011578 280 EVQRTDLV-----GEFVGHTGPKTR-------RRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--- 344 (482)
Q Consensus 280 ~~~~~~~~-----~~~~g~~~~~~~-------~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~--- 344 (482)
.++|+.+. ++.+|+.-.... .-|+.|.+|.||+|||..|...-| -.||..++++
T Consensus 279 ~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQ-----------aKLLRvLQegEie 347 (550)
T COG3604 279 KLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQ-----------AKLLRVLQEGEIE 347 (550)
T ss_pred eeeccccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHHHH-----------HHHHHHHhhccee
Confidence 99998754 557777332222 357788899999999999988666 8889888764
Q ss_pred ----------cEEEEEecCchhHHHHHhc--CccccCCC-cceeeCCCCC--HHHHHHHHHHHHhccccccccccccccC
Q 011578 345 ----------KVVVIFAGYSEPMKRVIAS--NEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHS 409 (482)
Q Consensus 345 ----------~~~vi~~~~~~~~~~~~~~--~~~l~~R~-~~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~ 409 (482)
+|.||+||+.+-...+.+. ...|..|+ -.-+++||+- .+++.-+...|+++...+ +|. -..
T Consensus 348 RvG~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~---~gr-~~l 423 (550)
T COG3604 348 RVGGDRTIKVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRR---LGR-AIL 423 (550)
T ss_pred ecCCCceeEEEEEEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHh---cCC-ccc
Confidence 3688888777665433211 12333466 1233344444 378888888888887642 232 145
Q ss_pred cccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 410 SCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
.++.++++.+..+.| |||.|+++|+|++|...+
T Consensus 424 ~ls~~Al~~L~~y~w------PGNVRELen~veRavlla 456 (550)
T COG3604 424 SLSAEALELLSSYEW------PGNVRELENVVERAVLLA 456 (550)
T ss_pred ccCHHHHHHHHcCCC------CCcHHHHHHHHHHHHHHh
Confidence 789999999999999 999999999999999976
No 151
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.72 E-value=2.8e-17 Score=158.47 Aligned_cols=207 Identities=17% Similarity=0.210 Sum_probs=150.8
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.+++++|.+...+.+.+.+..+ +....+|+++|++||||+++|++|+.. +.....+|+.++|
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~--------------a~~~~pVlI~GE~GtGK~~lA~~iH~~----s~r~~~pfv~v~c 65 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL--------------APLDKPVLIIGERGTGKELIASRLHYL----SSRWQGPFISLNC 65 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCcHHHHHHHHHHh----CCccCCCeEEEeC
Confidence 3567888887777777665544 245678999999999999999999973 3345679999999
Q ss_pred cccc-----ccccccchh-------hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-------
Q 011578 284 TDLV-----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 344 (482)
Q Consensus 284 ~~~~-----~~~~g~~~~-------~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~------- 344 (482)
..+. ..++|+... .....|+.+.+|+|||||++.|....| ..|+..++.+
T Consensus 66 ~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q-----------~~L~~~l~~~~~~~~g~ 134 (326)
T PRK11608 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQ-----------EKLLRVIEYGELERVGG 134 (326)
T ss_pred CCCCHHHHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHH-----------HHHHHHHhcCcEEeCCC
Confidence 8763 234554211 123457888999999999999998555 7777777653
Q ss_pred ------cEEEEEecCchhHHHHH--hcCccccCCC-cceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccH
Q 011578 345 ------KVVVIFAGYSEPMKRVI--ASNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSM 413 (482)
Q Consensus 345 ------~~~vi~~~~~~~~~~~~--~~~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 413 (482)
++.+|++++.+...... .-.+.|..|| ...|.+|++.. +++..+++.++.+.... ++......+++
T Consensus 135 ~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~---~~~~~~~~~s~ 211 (326)
T PRK11608 135 SQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRE---LGLPLFPGFTE 211 (326)
T ss_pred CceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHH---hCCCCCCCCCH
Confidence 36777776655432111 1135667788 66889999885 88999999998776431 12222257899
Q ss_pred HHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 414 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
+++..+..+.| +||.++|++++++++...
T Consensus 212 ~al~~L~~y~W------PGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 212 RARETLLNYRW------PGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHHHHhCCC------CcHHHHHHHHHHHHHHhc
Confidence 99999999999 999999999999998753
No 152
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.72 E-value=2.1e-17 Score=170.88 Aligned_cols=205 Identities=20% Similarity=0.255 Sum_probs=151.3
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.++.++|.+...+.+.+.+..+ +....+|+++|++||||+++|++|+... .....+|+.+++
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~--------------a~~~~pvli~Ge~GtGK~~lA~~ih~~s----~r~~~pfv~i~c 255 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVV--------------ARSNSTVLLRGESGTGKELIAKAIHYLS----PRAKRPFVKVNC 255 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHH--------------hCcCCCEEEECCCCccHHHHHHHHHHhC----CCCCCCeEEeec
Confidence 4667899988877777765544 2456789999999999999999999843 345569999999
Q ss_pred ccccc-----cccccchh-------hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-------
Q 011578 284 TDLVG-----EFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 344 (482)
Q Consensus 284 ~~~~~-----~~~g~~~~-------~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~------- 344 (482)
+.+.. ..+|+... .....|+.+.+|+||||||+.|.+..| ..|+..++.+
T Consensus 256 ~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q-----------~~Ll~~l~~~~~~~~~~ 324 (534)
T TIGR01817 256 AALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQ-----------AKLLRVLQEGEFERVGG 324 (534)
T ss_pred CCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHH-----------HHHHHHHhcCcEEECCC
Confidence 87532 23443211 112346778899999999999998555 7888888653
Q ss_pred ------cEEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCC--HHHHHHHHHHHHhccccccccccccccCcccH
Q 011578 345 ------KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSM 413 (482)
Q Consensus 345 ------~~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 413 (482)
++.+|++++.+....+.. -.+.|..|+ ...|.+|++. .+++..|++.++.+.... ++ ....+++
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~---~~--~~~~~s~ 399 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRE---NG--RPLTITP 399 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHH---cC--CCCCCCH
Confidence 367888877665442211 124555677 4578899888 689999999999876431 12 2257899
Q ss_pred HHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 414 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
+++..+..+.| +||.|+|++++++++...
T Consensus 400 ~a~~~L~~~~W------PGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 400 SAIRVLMSCKW------PGNVRELENCLERTATLS 428 (534)
T ss_pred HHHHHHHhCCC------CChHHHHHHHHHHHHHhC
Confidence 99999999999 999999999999998653
No 153
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.72 E-value=2.6e-17 Score=120.55 Aligned_cols=105 Identities=26% Similarity=0.379 Sum_probs=90.4
Q ss_pred chHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHH
Q 011578 14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA 93 (482)
Q Consensus 14 ~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~ 93 (482)
...+.|++++|.++.|+..+.++ .++|..- .|++|||||+.+|+.+++++|+. .|++++.+|++|-|||..|+
T Consensus 3 d~~~~W~vkNG~~DeVk~~v~~g-~nVn~~~--ggR~plhyAAD~GQl~ilefli~----iGA~i~~kDKygITPLLsAv 75 (117)
T KOG4214|consen 3 DMSVAWNVKNGEIDEVKQSVNEG-LNVNEIY--GGRTPLHYAADYGQLSILEFLIS----IGANIQDKDKYGITPLLSAV 75 (117)
T ss_pred chhHhhhhccCcHHHHHHHHHcc-ccHHHHh--CCcccchHhhhcchHHHHHHHHH----hccccCCccccCCcHHHHHH
Confidence 35678999999999999988654 6666665 38999999999999999999998 68899999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCccccccCCCcceeee
Q 011578 94 KNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 125 (482)
Q Consensus 94 ~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A 125 (482)
+.||.+||++|++.|||-.....+|.+.+-.+
T Consensus 76 wEGH~~cVklLL~~GAdrt~~~PdG~~~~eat 107 (117)
T KOG4214|consen 76 WEGHRDCVKLLLQNGADRTIHAPDGTALIEAT 107 (117)
T ss_pred HHhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence 99999999999999999888888887766544
No 154
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.72 E-value=5.5e-17 Score=174.39 Aligned_cols=173 Identities=20% Similarity=0.259 Sum_probs=133.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc---CCCCCCCeEE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTE 280 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~---~~~~~~~~~~ 280 (482)
.++.++|.+...+++.+.+. .....+++|+||||||||++|+.+|..+... ......+++.
T Consensus 176 ~l~~vigr~~ei~~~i~iL~----------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQ----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHh----------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 46778999987666555421 1244689999999999999999999988531 1122457777
Q ss_pred eeccccc--ccccccchhhHHHHHHhc----CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 281 VQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 281 ~~~~~~~--~~~~g~~~~~~~~~~~~a----~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
++.+.+. .+|.|+.+..++++|+.. .+.||||||+|.+...+.+++ ...+-+.|...+..|.+.+|+|||.
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~---~~d~~~~lkp~l~~g~l~~IgaTt~ 316 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG---AMDAGNMLKPALARGELHCVGATTL 316 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc---chhHHHHhcchhhcCCCeEEEcCCC
Confidence 7777665 458899999999998752 347999999999987654222 2345577888899999999999999
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhcc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 396 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 396 (482)
+++...+..++++.+||. .|.++.|+.+++.+|++......
T Consensus 317 ~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 317 DEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred HHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 999877788999999995 68899999999999998765543
No 155
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.4e-16 Score=156.30 Aligned_cols=189 Identities=14% Similarity=0.183 Sum_probs=130.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 276 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~------ 276 (482)
..|++++|++.+++.+...+.. ...+..++|+||||+|||++|+++|+.+.........
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~---------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL---------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc---------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 5789999999999988875321 1123447999999999999999999998642111111
Q ss_pred -----------CeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 277 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 277 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
.+++++++.- .....++++++.. +..|+||||+|.+.. .+.+.|+
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~~------~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~naLL 140 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAASR------TKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNALL 140 (363)
T ss_pred HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHHHH
Confidence 1233322210 1122344554432 347999999999975 4458899
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..+++ +.+.+|++++.. ..+ .+++.+|+ ..++|++|+.+++.++++..+++.. ..++++++
T Consensus 141 k~lEe~~~~~~fIl~t~~~--~~l---~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g-----------~~i~~~al 203 (363)
T PRK14961 141 KTLEEPPQHIKFILATTDV--EKI---PKTILSRC-LQFKLKIISEEKIFNFLKYILIKES-----------IDTDEYAL 203 (363)
T ss_pred HHHhcCCCCeEEEEEcCCh--Hhh---hHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99986 455566654332 233 67889999 8999999999999999999887643 34677888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++... .|+.|.+.+.++.+...
T Consensus 204 ~~ia~~s-------~G~~R~al~~l~~~~~~ 227 (363)
T PRK14961 204 KLIAYHA-------HGSMRDALNLLEHAINL 227 (363)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 8888754 57788888888877543
No 156
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.71 E-value=1.5e-17 Score=167.24 Aligned_cols=160 Identities=30% Similarity=0.377 Sum_probs=134.0
Q ss_pred CCCCchHhHHHHH---cCCHHHHHHHHhhCCCCccCC---CCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC--
Q 011578 10 RSAKPATIHGCAQ---SGDLLAFQRLLRENPSLLNER---NPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-- 81 (482)
Q Consensus 10 ~~~~~t~l~~a~~---~g~~~~v~~ll~~~~~~~~~~---~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-- 81 (482)
...|.|.||.|.. .++.++++.||+-.|..+|.. +.+.|.||||+|+.+.+.++|++|++. |+|++++
T Consensus 140 Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~----gADV~aRa~ 215 (782)
T KOG3676|consen 140 GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAA----GADVHARAC 215 (782)
T ss_pred cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHc----CCchhhHhh
Confidence 6789999999986 456688999998777666544 455699999999999999999999994 5555533
Q ss_pred -------c--------------CCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHH
Q 011578 82 -------N--------------MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 140 (482)
Q Consensus 82 -------~--------------~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~ 140 (482)
| ..|+.||.+||..++.+++++|+++|||++++|.+|+|.||..+ ..-..+|..+
T Consensus 216 G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lV----i~~~~~My~~ 291 (782)
T KOG3676|consen 216 GAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLV----IHFVTEMYDL 291 (782)
T ss_pred ccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHH----HHHHHHHHHH
Confidence 1 25889999999999999999999999999999999999999999 6678999999
Q ss_pred HhhCCCC--ccccCCCCCChhhhhhcCCCChHHHHHHHhh
Q 011578 141 LLEYNAD--CSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178 (482)
Q Consensus 141 Ll~~gad--~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~ 178 (482)
++++|++ ...+|..|.||| -.|+.-+..+|...+++.
T Consensus 292 ~L~~ga~~l~~v~N~qgLTPL-tLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 292 ALELGANALEHVRNNQGLTPL-TLAAKLGKKEMFQHILER 330 (782)
T ss_pred HHhcCCCccccccccCCCChH-HHHHHhhhHHHHHHHHHh
Confidence 9999999 899999999999 445555666665555544
No 157
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.71 E-value=8.9e-17 Score=166.80 Aligned_cols=222 Identities=21% Similarity=0.277 Sum_probs=147.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---CCCCeE
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRVT 279 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~---~~~~~~ 279 (482)
..|++++|++...+.+...+ ....+.+++|+||||||||++|+++++........ ...+|+
T Consensus 151 ~~~~~iiGqs~~~~~l~~~i----------------a~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKV----------------ASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred CcHHhceeCcHHHHHHHHHH----------------hcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 56788999998877665431 12245689999999999999999999877432211 346788
Q ss_pred Eeeccccc-------ccccccchhh-----------------HHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHH
Q 011578 280 EVQRTDLV-------GEFVGHTGPK-----------------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALE 335 (482)
Q Consensus 280 ~~~~~~~~-------~~~~g~~~~~-----------------~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~ 335 (482)
.+++..+. ..++|..... ....+..+.++||||||++.|.+..| .
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q-----------~ 283 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQ-----------N 283 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHH-----------H
Confidence 88876542 1233321110 11234566789999999999987544 5
Q ss_pred HHHhhhcCC------------------------------cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHH
Q 011578 336 EIMSVMDGG------------------------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEEL 385 (482)
Q Consensus 336 ~ll~~l~~~------------------------------~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~ 385 (482)
.|+..|+.+ .+++|++|+.++. .+ +|++++|| ..+.|++++.+++
T Consensus 284 ~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~-~l---~~aLrSR~-~~i~~~pls~edi 358 (615)
T TIGR02903 284 KLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE-EI---NPALRSRC-AEVFFEPLTPEDI 358 (615)
T ss_pred HHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecccccc-cc---CHHHHhce-eEEEeCCCCHHHH
Confidence 555555432 2566666665543 22 78899999 5789999999999
Q ss_pred HHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcc
Q 011578 386 AKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTI 465 (482)
Q Consensus 386 ~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i 465 (482)
..|++..+.+.. ..++++++..+..+.| .+|...++++.+......+... .........|
T Consensus 359 ~~Il~~~a~~~~-----------v~ls~eal~~L~~ys~--------~gRraln~L~~~~~~~~~~~~~-~~~~~~~~~I 418 (615)
T TIGR02903 359 ALIVLNAAEKIN-----------VHLAAGVEELIARYTI--------EGRKAVNILADVYGYALYRAAE-AGKENDKVTI 418 (615)
T ss_pred HHHHHHHHHHcC-----------CCCCHHHHHHHHHCCC--------cHHHHHHHHHHHHHHHHHHHHH-hccCCCCeeE
Confidence 999999887532 2467788888877654 3466667887776554333220 0011223579
Q ss_pred cHHHHHHHHHH
Q 011578 466 TLEDLEAGLKL 476 (482)
Q Consensus 466 ~~~d~~~al~~ 476 (482)
+.+|+.++++.
T Consensus 419 ~~edv~~~l~~ 429 (615)
T TIGR02903 419 TQDDVYEVIQI 429 (615)
T ss_pred CHHHHHHHhCC
Confidence 99999998864
No 158
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.71 E-value=4.6e-16 Score=168.12 Aligned_cols=218 Identities=19% Similarity=0.302 Sum_probs=155.1
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
..++|++.+.+.+...+... ..+...+..+...++|+||||||||++|++||+.+... ..+++.++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~-------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~----~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRS-------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD----EDAMVRIDMSE 633 (852)
T ss_pred cccCCChHHHHHHHHHHHHH-------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC----CCcEEEEechh
Confidence 35899999988888765432 22222223345679999999999999999999987532 24677777665
Q ss_pred ccc------------cccccc-hhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-------
Q 011578 286 LVG------------EFVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK------- 345 (482)
Q Consensus 286 ~~~------------~~~g~~-~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~------- 345 (482)
+.. .|+|.. ...+.+.+...+++|||||||+++.+ .+.+.|++.|++|.
T Consensus 634 ~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~-----------~v~~~Ll~~l~~g~l~d~~g~ 702 (852)
T TIGR03346 634 YMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP-----------DVFNVLLQVLDDGRLTDGQGR 702 (852)
T ss_pred hcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH-----------HHHHHHHHHHhcCceecCCCe
Confidence 321 245543 34566667767789999999999988 56699999997642
Q ss_pred ------EEEEEecCchhH--HH-------------H---Hh--cCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccc
Q 011578 346 ------VVVIFAGYSEPM--KR-------------V---IA--SNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTED 399 (482)
Q Consensus 346 ------~~vi~~~~~~~~--~~-------------~---~~--~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~ 399 (482)
.+||+|++...- .. + +. -.|.|..|+|.++.|.+++.+++.+|+...+....++
T Consensus 703 ~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~ 782 (852)
T TIGR03346 703 TVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKR 782 (852)
T ss_pred EEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHH
Confidence 357777654111 00 0 00 1488999999999999999999999999998866543
Q ss_pred cccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhh
Q 011578 400 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLR 451 (482)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r 451 (482)
....++ ...++++++..++...| ...+|+|.|++++++.+.....+
T Consensus 783 l~~~~~--~l~i~~~a~~~L~~~~~----~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 783 LAERKI--TLELSDAALDFLAEAGY----DPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred HHHCCC--eecCCHHHHHHHHHhCC----CCCCCchhHHHHHHHHHHHHHHH
Confidence 322333 46789999999999765 23688999999999988765443
No 159
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=2.8e-16 Score=160.29 Aligned_cols=189 Identities=17% Similarity=0.200 Sum_probs=136.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 276 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~------ 276 (482)
..|++++|++.+++.|..++.. ...+..+||+||+|||||++|+++|+.+.........
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~---------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDE---------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 5789999999999999887431 1234568999999999999999999998653221111
Q ss_pred -----------CeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 277 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 277 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
.+++++.++ +.....++++++. .+..|+||||+|.|.. .+.+.|+
T Consensus 78 sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-----------~A~NALL 140 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-----------SAFNAML 140 (709)
T ss_pred HHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-----------HHHHHHH
Confidence 123333221 1122346666653 2447999999998875 4558899
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|++ +.+++|++++... .+ .+.+++|+ ..|.|+.++.+++...++..++++. ..++.+++
T Consensus 141 KtLEEPp~~v~fILaTtd~~--kL---~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEg-----------i~id~eAL 203 (709)
T PRK08691 141 KTLEEPPEHVKFILATTDPH--KV---PVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEK-----------IAYEPPAL 203 (709)
T ss_pred HHHHhCCCCcEEEEEeCCcc--cc---chHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcC-----------CCcCHHHH
Confidence 99986 5566666553322 22 56778998 8899999999999999999988753 35688899
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..+++.. .|+.|.+.++++.++..
T Consensus 204 ~~Ia~~A-------~GslRdAlnLLDqaia~ 227 (709)
T PRK08691 204 QLLGRAA-------AGSMRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHh-------CCCHHHHHHHHHHHHHh
Confidence 9998876 58889999999887764
No 160
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.71 E-value=1.4e-16 Score=171.99 Aligned_cols=191 Identities=19% Similarity=0.243 Sum_probs=141.6
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcC---CCCCCCeEE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTE 280 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~---~~~~~~~~~ 280 (482)
.++.++|.+...+++.+.+. .....+++|+||||||||++++.+|..+.... .....+++.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~----------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLS----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHh----------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 45678999987666665421 22456789999999999999999999874311 112346777
Q ss_pred eeccccc--ccccccchhhHHHHHHhc----CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 281 VQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 281 ~~~~~~~--~~~~g~~~~~~~~~~~~a----~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
++.+.+. .+|.|+.+..++++|+.. .+.||||||+|.+...+...+ ...+.+.|...+..+.+.+|++||.
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~---~~d~~~~Lk~~l~~g~i~~IgaTt~ 311 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG---AMDAGNMLKPALARGELHCIGATTL 311 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc---hhHHHHHhchhhhcCceEEEEeCcH
Confidence 7766664 468898888999998764 358999999999986443221 2345677888888999999999999
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHH
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 421 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (482)
+++...+..+|++.+|| ..|.++.|+.+++..|++....+... .....++++++.....
T Consensus 312 ~e~r~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~e~-------~~~v~~~d~~i~~~~~ 370 (852)
T TIGR03346 312 DEYRKYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKERYEV-------HHGVRITDPAIVAAAT 370 (852)
T ss_pred HHHHHHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHhcc-------ccCCCCCHHHHHHHHH
Confidence 99987778899999999 56899999999999999887665432 2233445566555543
No 161
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=3.2e-16 Score=160.70 Aligned_cols=188 Identities=16% Similarity=0.224 Sum_probs=134.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCc-eeEecCCCCchHHHHHHHHHHHHHcCCCCCC-----
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILPTD----- 276 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~~~~~~~~~~~----- 276 (482)
..|++++|++.+++.|...+. .....| +||+||+|+|||++|+++|+.+.........
T Consensus 13 ~~f~divGQe~vv~~L~~~l~----------------~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALD----------------LGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHH----------------cCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 578999999999998887632 122334 6999999999999999999999863211111
Q ss_pred ------------CeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHH
Q 011578 277 ------------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEI 337 (482)
Q Consensus 277 ------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~l 337 (482)
.++++++++- . ....++++.+.. +..|+||||+|+|.. ...|.|
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~----~--~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NAL 139 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASR----T--KVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNAL 139 (647)
T ss_pred HHHHHHHcCCCCCceeeccccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHHH
Confidence 2344443320 1 122344444332 347999999999987 455999
Q ss_pred HhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHH
Q 011578 338 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 415 (482)
Q Consensus 338 l~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 415 (482)
|..|++ +.+++|++|+... .+ .+.+++|+ ..|+|.+++.+++...++..+.++. ..++.++
T Consensus 140 LKtLEEPp~~v~FIL~Tt~~~--kL---l~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~-----------i~~e~~a 202 (647)
T PRK07994 140 LKTLEEPPEHVKFLLATTDPQ--KL---PVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQ-----------IPFEPRA 202 (647)
T ss_pred HHHHHcCCCCeEEEEecCCcc--cc---chHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence 999998 6677777755433 22 67889998 9999999999999999999887642 3557788
Q ss_pred HHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 416 IAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
+..++... .|+.|...++++.+...
T Consensus 203 L~~Ia~~s-------~Gs~R~Al~lldqaia~ 227 (647)
T PRK07994 203 LQLLARAA-------DGSMRDALSLTDQAIAS 227 (647)
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 88887764 57788888888877654
No 162
>PHA02792 ankyrin-like protein; Provisional
Probab=99.70 E-value=1.1e-16 Score=161.87 Aligned_cols=139 Identities=13% Similarity=0.056 Sum_probs=117.0
Q ss_pred chHhHHHHHcC--CHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCC--ChHH
Q 011578 14 PATIHGCAQSG--DLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG--ETPL 89 (482)
Q Consensus 14 ~t~l~~a~~~g--~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g--~tpL 89 (482)
+-.||.-...+ +.++++.+++++.. .+. . .+..++|.||..|+.++|++|++ .|++++.+|..| .|||
T Consensus 307 q~~l~~Yl~~~~v~ieiIK~LId~Ga~-~~r--~-~~~n~~~~Aa~~gn~eIVelLIs----~GADIN~kD~~g~~~TpL 378 (631)
T PHA02792 307 QDLLSEYVSYHTVYINVIKCMIDEGAT-LYR--F-KHINKYFQKFDNRDPKVVEYILK----NGNVVVEDDDNIINIMPL 378 (631)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHCCCc-ccc--C-CcchHHHHHHHcCCHHHHHHHHH----cCCchhhhcCCCCChhHH
Confidence 34566666666 67889988866444 431 2 26778999999999999999999 578899888775 6999
Q ss_pred HHHHHcCCH---HHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhc
Q 011578 90 HMAAKNGCN---EAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164 (482)
Q Consensus 90 h~A~~~g~~---~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~ 164 (482)
|+|+..... +++++|+++|+|+|.+|..|+||||+|+ ..++.+++++|+++|++++.+|..|.||||+|+.
T Consensus 379 h~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa----~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~ 452 (631)
T PHA02792 379 FPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCI----ESHSVSLVEWLIDNGADINITTKYGSTCIGICVI 452 (631)
T ss_pred HHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 998877664 4689999999999999999999999999 8889999999999999999999999999977654
No 163
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=2.3e-16 Score=159.40 Aligned_cols=189 Identities=14% Similarity=0.202 Sum_probs=133.0
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 276 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~------ 276 (482)
..|++++|++.+++.+...+..- ..+..+||+||||||||++|+++|+.+.........
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~---------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ---------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC---------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 57889999999999888763211 123448999999999999999999988642211111
Q ss_pred -----------CeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 277 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 277 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
.+++++... ..| ...++++++. .+..|+||||+|++.. .+.+.|+
T Consensus 78 sC~~i~~~~~~dlieidaas----~~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~naLL 140 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAAS----RTG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNALL 140 (546)
T ss_pred HHHHHhcCCCCceEEeeccc----ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHHHH
Confidence 233333211 111 1223344332 2447999999999986 4558999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|++ +.+++|++|+. ...+ .+.+++|+ ..++|.+++.+++...++..++++. ..++++++
T Consensus 141 K~LEepp~~v~fIL~Ttd--~~ki---l~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~eg-----------i~~e~~Al 203 (546)
T PRK14957 141 KTLEEPPEYVKFILATTD--YHKI---PVTILSRC-IQLHLKHISQADIKDQLKIILAKEN-----------INSDEQSL 203 (546)
T ss_pred HHHhcCCCCceEEEEECC--hhhh---hhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99998 45666666543 2223 56689999 9999999999999999999887643 35688889
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++... .|+.|.+.+.++.++..
T Consensus 204 ~~Ia~~s-------~GdlR~alnlLek~i~~ 227 (546)
T PRK14957 204 EYIAYHA-------KGSLRDALSLLDQAISF 227 (546)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 9888765 57788888999887754
No 164
>PHA02792 ankyrin-like protein; Provisional
Probab=99.70 E-value=3.9e-17 Score=165.05 Aligned_cols=168 Identities=12% Similarity=0.029 Sum_probs=128.7
Q ss_pred CccccccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHH-HhCCcHHHHHHHHcCCCCCCccccc
Q 011578 2 QKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVS-AGYNKAEIVKSLLEWPGNDKVELEA 80 (482)
Q Consensus 2 ~~~~~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A-~~~g~~~~v~~Ll~~~~~~~~~~~~ 80 (482)
+.|.++--.+.+.||||.-..+.+...=..++..-+..++..+.. |.+|+|+- +..|+.++|++|+. .|+++|.
T Consensus 26 ~~g~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~-~~~~~~~~~s~n~~lElvk~LI~----~GAdvN~ 100 (631)
T PHA02792 26 ESGANPLYEYDGETPLKAYVTKKNNNIKNDVVILLLSSVDYKNIN-DFDIFEYLCSDNIDIELLKLLIS----KGLEINS 100 (631)
T ss_pred HcCCCcccccCCCccHHHHHhhhhhhHHHHHHHHHHhCCCcCccC-CccHHHHHHHhcccHHHHHHHHH----cCCCccc
Confidence 456666667888899998876665432222221223334455544 77899865 45789999999999 5888999
Q ss_pred CcCCCChHHHHHHH-cCCHHHHHHHHhCCCCcc------------------------------------ccccCCCccee
Q 011578 81 QNMYGETPLHMAAK-NGCNEAAKLLLAHGAFIE------------------------------------AKANNGMTPLH 123 (482)
Q Consensus 81 ~~~~g~tpLh~A~~-~g~~~~v~~Ll~~ga~~~------------------------------------~~d~~g~tpLh 123 (482)
++..+.||||+|+. .++.+++++|+++||+++ ..|..|.||||
T Consensus 101 ~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~ 180 (631)
T PHA02792 101 IKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLY 180 (631)
T ss_pred ccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHH
Confidence 99989999999966 699999999999998643 34557999999
Q ss_pred eehhhccCCC-------hHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC-ChHHHHHHHhh
Q 011578 124 LSVWYSIRSE-------DYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG-SAKLRELLLWH 178 (482)
Q Consensus 124 ~A~~~~~~~~-------~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~-~~~~~~lL~~~ 178 (482)
+|+ ..+ +.+++++|+++|++++.+|..|.||||+++.... ..+++++|...
T Consensus 181 ~~i----~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~ 239 (631)
T PHA02792 181 YYI----ITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDS 239 (631)
T ss_pred HHH----hhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhc
Confidence 999 555 7999999999999999999999999977766542 56788888764
No 165
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.70 E-value=3.2e-17 Score=162.89 Aligned_cols=155 Identities=29% Similarity=0.323 Sum_probs=137.1
Q ss_pred chHhHHHHHcCCHHHHHHHHhhC------------CCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC
Q 011578 14 PATIHGCAQSGDLLAFQRLLREN------------PSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (482)
Q Consensus 14 ~t~l~~a~~~g~~~~v~~ll~~~------------~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (482)
.+-|..||..|+.+.+..+|... ...+|..|. +|.|.||.||.+|+..++++|++ ..+.++..
T Consensus 4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~-~gfTalhha~Lng~~~is~llle----~ea~ldl~ 78 (854)
T KOG0507|consen 4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDY-SGFTLLHHAVLNGQNQISKLLLD----YEALLDLC 78 (854)
T ss_pred hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCc-cchhHHHHHHhcCchHHHHHHhc----chhhhhhh
Confidence 45688999999999999999642 244566666 49999999999999999999999 46778888
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhh
Q 011578 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 161 (482)
Q Consensus 82 ~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~ 161 (482)
|..|.+|||+|++.|+.+++++|+.++..+|..+..|.||||.|+ ..||.+++.+|+++|+|+-.+|..+.|+++.
T Consensus 79 d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaa----qhgh~dvv~~Ll~~~adp~i~nns~~t~ldl 154 (854)
T KOG0507|consen 79 DTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAA----QHGHLEVVFYLLKKNADPFIRNNSKETVLDL 154 (854)
T ss_pred hccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhh----hhcchHHHHHHHhcCCCccccCcccccHHHH
Confidence 899999999999999999999999999999999999999999999 9999999999999999999999999999954
Q ss_pred hhcCCCChHHHHHHHhh
Q 011578 162 LSNGPGSAKLRELLLWH 178 (482)
Q Consensus 162 ~a~~~~~~~~~~lL~~~ 178 (482)
|++-+...++.+|.+.
T Consensus 155 -A~qfgr~~Vvq~ll~~ 170 (854)
T KOG0507|consen 155 -ASRFGRAEVVQMLLQK 170 (854)
T ss_pred -HHHhhhhHHHHHHhhh
Confidence 5556677777777655
No 166
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=5e-16 Score=158.50 Aligned_cols=188 Identities=19% Similarity=0.197 Sum_probs=134.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCc-eeEecCCCCchHHHHHHHHHHHHHcCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGIL-------- 273 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~~~~~~~~-------- 273 (482)
..|++++|++.+++.|+.++. .....| +||+||+|||||++|+++|+.+......
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~----------------~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALD----------------AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHH----------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 578999999999999988742 123445 7999999999999999999988742111
Q ss_pred -----------CCCCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHH
Q 011578 274 -----------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALE 335 (482)
Q Consensus 274 -----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~ 335 (482)
....+++++++... +-..++++.+. ++..|++|||+|.|.. .+.|
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~N 136 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGFN 136 (584)
T ss_pred HHHHHhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHHH
Confidence 11223444432211 11233333322 3458999999999987 4559
Q ss_pred HHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccH
Q 011578 336 EIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSM 413 (482)
Q Consensus 336 ~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 413 (482)
.||..|++ ..+++|++|+.. ..+ .+++++|+ ..++|..++.+++.+.++.+++++. ..++.
T Consensus 137 ALLK~LEEpp~~~~fIL~tte~--~kl---l~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~eg-----------i~i~~ 199 (584)
T PRK14952 137 ALLKIVEEPPEHLIFIFATTEP--EKV---LPTIRSRT-HHYPFRLLPPRTMRALIARICEQEG-----------VVVDD 199 (584)
T ss_pred HHHHHHhcCCCCeEEEEEeCCh--Hhh---HHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcC-----------CCCCH
Confidence 99999987 567777765433 233 67889997 8999999999999999999888753 34677
Q ss_pred HHHHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 414 DAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
+++..++... .|+.|++.++++.+...
T Consensus 200 ~al~~Ia~~s-------~GdlR~aln~Ldql~~~ 226 (584)
T PRK14952 200 AVYPLVIRAG-------GGSPRDTLSVLDQLLAG 226 (584)
T ss_pred HHHHHHHHHc-------CCCHHHHHHHHHHHHhc
Confidence 8887777654 57788888998887543
No 167
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=1e-15 Score=154.67 Aligned_cols=188 Identities=18% Similarity=0.227 Sum_probs=132.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--------- 273 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~--------- 273 (482)
..|++++|++.+++.|..++..- ..+..+||+||||||||++|+++|+.+...+..
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~---------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQG---------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcC---------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 46889999999999998874321 123345999999999999999999999753311
Q ss_pred -------CCCCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHHh
Q 011578 274 -------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 339 (482)
Q Consensus 274 -------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~ 339 (482)
....++++++++- .+...++++.+. ....||+|||+|.+.. ..++.|+.
T Consensus 76 c~~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~-----------~a~naLLk 138 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK-----------SAFNALLK 138 (504)
T ss_pred hHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccCH-----------HHHHHHHH
Confidence 1123445544311 112234444322 2347999999998864 45688999
Q ss_pred hhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHH
Q 011578 340 VMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 417 (482)
Q Consensus 340 ~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 417 (482)
.|+. ..+++|++++.. ..+ .+.+.+|+ ..++|++|+.+++...++..+++.. ..++++++.
T Consensus 139 ~LEep~~~t~~Il~t~~~--~kl---~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~eg-----------i~i~~~Al~ 201 (504)
T PRK14963 139 TLEEPPEHVIFILATTEP--EKM---PPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEG-----------REAEPEALQ 201 (504)
T ss_pred HHHhCCCCEEEEEEcCCh--hhC---ChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHH
Confidence 9987 455555554322 222 67788898 6899999999999999999988753 345888898
Q ss_pred HHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 418 ALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
.++... .|+.|.+.+.++.+..
T Consensus 202 ~ia~~s-------~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 202 LVARLA-------DGAMRDAESLLERLLA 223 (504)
T ss_pred HHHHHc-------CCCHHHHHHHHHHHHh
Confidence 888865 5788888888888754
No 168
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=8.7e-16 Score=157.71 Aligned_cols=189 Identities=17% Similarity=0.234 Sum_probs=135.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--------- 273 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~--------- 273 (482)
..|++++|++.+++.+...+..- ..+..+||+||+|||||++|+.+|+.+......
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~---------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQG---------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcC---------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 57899999999999998874311 234458999999999999999999998643211
Q ss_pred --------CCCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 274 --------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 274 --------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
....++++++++ +.+...++++.+.+ +..|+||||+|.|.. .+.+.|+
T Consensus 78 ~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naLL 140 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNALL 140 (559)
T ss_pred HHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHH
Confidence 112344444422 12233455555432 348999999999976 4568999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..+++ ..+++|++|+.. ..+ .+.+++|+ ..+.|++|+.+++...++..+++.. ..++++++
T Consensus 141 KtLEepp~~~ifIlatt~~--~ki---~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~eg-----------i~i~~~al 203 (559)
T PRK05563 141 KTLEEPPAHVIFILATTEP--HKI---PATILSRC-QRFDFKRISVEDIVERLKYILDKEG-----------IEYEDEAL 203 (559)
T ss_pred HHhcCCCCCeEEEEEeCCh--hhC---cHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 456666665432 233 67889999 7899999999999999999887653 34577888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++... .|+.|++.+.++.+...
T Consensus 204 ~~ia~~s-------~G~~R~al~~Ldq~~~~ 227 (559)
T PRK05563 204 RLIARAA-------EGGMRDALSILDQAISF 227 (559)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 8888754 57788888888877654
No 169
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.69 E-value=1e-15 Score=149.86 Aligned_cols=189 Identities=20% Similarity=0.211 Sum_probs=126.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.+..+.. ....++++|+||||||||++|+++++++...+ ...+++.++
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~----------------~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~--~~~~~~~i~ 73 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVD----------------SPNLPHLLVQGPPGSGKTAAVRALARELYGDP--WENNFTEFN 73 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHh----------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCcc--cccceEEec
Confidence 458889999999999888632 12334799999999999999999999886322 123566777
Q ss_pred cccccccc-------------ccc-------chhhHHHHHHh--------cCCcEEEEecccccccCCCCCCChhHHHHH
Q 011578 283 RTDLVGEF-------------VGH-------TGPKTRRRIKE--------AEGGILFVDEAYRLIPMQKADDKDYGIEAL 334 (482)
Q Consensus 283 ~~~~~~~~-------------~g~-------~~~~~~~~~~~--------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~ 334 (482)
++++.... .+. ....+++++.. +...+|||||+|.+.... .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~-----------~ 142 (337)
T PRK12402 74 VADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDA-----------Q 142 (337)
T ss_pred hhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHH-----------H
Confidence 66543211 111 01122332221 234799999999886532 2
Q ss_pred HHHHhhhc---CCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcc
Q 011578 335 EEIMSVMD---GGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 411 (482)
Q Consensus 335 ~~ll~~l~---~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~ 411 (482)
+.|...++ ....+|++++++.. + .+++.+|+ ..++|++|+.+++..+++..+.+.. ..+
T Consensus 143 ~~L~~~le~~~~~~~~Il~~~~~~~---~---~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~-----------~~~ 204 (337)
T PRK12402 143 QALRRIMEQYSRTCRFIIATRQPSK---L---IPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEG-----------VDY 204 (337)
T ss_pred HHHHHHHHhccCCCeEEEEeCChhh---C---chhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCC
Confidence 44555554 33444444433321 2 56788898 7899999999999999999887643 347
Q ss_pred cHHHHHHHHHHHhhHhhccccCcchhHHHHHHHH
Q 011578 412 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR 445 (482)
Q Consensus 412 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~ 445 (482)
+.+++..++... ++|.|.+.+.++.+.
T Consensus 205 ~~~al~~l~~~~-------~gdlr~l~~~l~~~~ 231 (337)
T PRK12402 205 DDDGLELIAYYA-------GGDLRKAILTLQTAA 231 (337)
T ss_pred CHHHHHHHHHHc-------CCCHHHHHHHHHHHH
Confidence 889999999865 577777777776654
No 170
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1e-15 Score=156.78 Aligned_cols=189 Identities=17% Similarity=0.176 Sum_probs=133.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
+.|++++|++.+++.|..++..- ..+..+||+||+|||||++|+++|+.+...+...
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~---------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ---------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC---------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 57899999999999888874311 1234469999999999999999999997532110
Q ss_pred --------------CCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHH
Q 011578 275 --------------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEA 333 (482)
Q Consensus 275 --------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~ 333 (482)
...++++++++- .....++++++.+ +..|++|||+|+|.. ..
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~-----------~a 140 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN-----------TA 140 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH-----------HH
Confidence 012333333211 1123456665542 347999999999987 44
Q ss_pred HHHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcc
Q 011578 334 LEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 411 (482)
Q Consensus 334 ~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~ 411 (482)
.|.|+..|++ +.+++|++|+... .+ .+.+++|+ ..|+|..++.+++.+.++..+.++. ..+
T Consensus 141 ~NaLLKtLEEPP~~~~fIL~Ttd~~--ki---l~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~eg-----------i~i 203 (618)
T PRK14951 141 FNAMLKTLEEPPEYLKFVLATTDPQ--KV---PVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAEN-----------VPA 203 (618)
T ss_pred HHHHHHhcccCCCCeEEEEEECCch--hh---hHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcC-----------CCC
Confidence 5899999987 5556666543322 12 45688998 9999999999999999999887653 356
Q ss_pred cHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 412 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 412 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
+.+++..++... .|+.|.+.++++++...
T Consensus 204 e~~AL~~La~~s-------~GslR~al~lLdq~ia~ 232 (618)
T PRK14951 204 EPQALRLLARAA-------RGSMRDALSLTDQAIAF 232 (618)
T ss_pred CHHHHHHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 788888888865 57788888888776654
No 171
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.69 E-value=1.3e-15 Score=164.22 Aligned_cols=223 Identities=17% Similarity=0.285 Sum_probs=154.6
Q ss_pred HHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCe
Q 011578 200 ELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV 278 (482)
Q Consensus 200 ~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~ 278 (482)
.+...+. .++|++.+++.+...+... ..+...+..+...++|+||||||||++|++||+.+... ..++
T Consensus 502 ~l~~~L~~~v~GQ~~ai~~l~~~i~~~-------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~----~~~~ 570 (821)
T CHL00095 502 HMEETLHKRIIGQDEAVVAVSKAIRRA-------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS----EDAM 570 (821)
T ss_pred HHHHHhcCcCcChHHHHHHHHHHHHHH-------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC----ccce
Confidence 4444444 4789999999888764332 22332233344568999999999999999999987532 2356
Q ss_pred EEeeccccc------------ccccccch-hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc
Q 011578 279 TEVQRTDLV------------GEFVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK 345 (482)
Q Consensus 279 ~~~~~~~~~------------~~~~g~~~-~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 345 (482)
+.++.+++. ..|+|..+ ..+.+.+...+.+||||||+|++++ .+.+.|++.|++|.
T Consensus 571 ~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~-----------~v~~~Llq~le~g~ 639 (821)
T CHL00095 571 IRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP-----------DIFNLLLQILDDGR 639 (821)
T ss_pred EEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH-----------HHHHHHHHHhccCc
Confidence 666655432 12555433 4567777777889999999999987 66699999998742
Q ss_pred -------------EEEEEecCchhH-----------------------HHH---H------hcCccccCCCcceeeCCCC
Q 011578 346 -------------VVVIFAGYSEPM-----------------------KRV---I------ASNEGFCRRVTKFFHFNDF 380 (482)
Q Consensus 346 -------------~~vi~~~~~~~~-----------------------~~~---~------~~~~~l~~R~~~~i~~~~~ 380 (482)
.++|+|++...- ..+ + .-.|+|++|+|.+|.|.++
T Consensus 640 ~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL 719 (821)
T CHL00095 640 LTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQL 719 (821)
T ss_pred eecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCC
Confidence 466666542110 000 0 0138899999999999999
Q ss_pred CHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhh
Q 011578 381 NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDL 450 (482)
Q Consensus 381 ~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 450 (482)
+.+++.+|++..+.+..++.... .+...++++++..++...+ ....++|.|+.++++-......
T Consensus 720 ~~~~l~~Iv~~~l~~l~~rl~~~--~i~l~~~~~~~~~La~~~~----~~~~GAR~l~r~i~~~i~~~l~ 783 (821)
T CHL00095 720 TKNDVWEIAEIMLKNLFKRLNEQ--GIQLEVTERIKTLLIEEGY----NPLYGARPLRRAIMRLLEDPLA 783 (821)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHC--CcEEEECHHHHHHHHHhcC----CCCCChhhHHHHHHHHHHHHHH
Confidence 99999999999998875543333 3445679999999998643 1245678898888877765443
No 172
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.68 E-value=1.7e-16 Score=160.63 Aligned_cols=206 Identities=17% Similarity=0.165 Sum_probs=145.9
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHH-c---CCCCCCCeE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM-V---GILPTDRVT 279 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~-~---~~~~~~~~~ 279 (482)
.|++++|.+...+.+++.+..+ +....+||++|++||||+++|++|++.+.. . +.....||+
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~--------------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv 282 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLY--------------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFV 282 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeE
Confidence 5778999998877777765433 346678999999999999999999986221 0 334567999
Q ss_pred Eeeccccc-----ccccccchh--------hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-
Q 011578 280 EVQRTDLV-----GEFVGHTGP--------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK- 345 (482)
Q Consensus 280 ~~~~~~~~-----~~~~g~~~~--------~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~- 345 (482)
.++|+.+. +..+|+... .-...|+.|.+|+||||||+.|.+..| ..|+..++++.
T Consensus 283 ~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q-----------~kLl~~L~e~~~ 351 (538)
T PRK15424 283 AVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ-----------TRLLRVLEEKEV 351 (538)
T ss_pred EeecccCChhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHH-----------HHHHhhhhcCeE
Confidence 99998753 335554221 122478899999999999999998655 88888887643
Q ss_pred ------------EEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCCH--HHHHHHHHHHHhcccccccccccccc
Q 011578 346 ------------VVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLH 408 (482)
Q Consensus 346 ------------~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~ 408 (482)
+.+|++|+.+....+-. -.+.|..|+ ...|.+|++.. +++..+++.++++.... ..
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~-------~~ 424 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAA-------LS 424 (538)
T ss_pred EecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHH-------cC
Confidence 36788776665332211 023344466 45777888774 88999999999874321 11
Q ss_pred CcccHHHH-------HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 409 SSCSMDAI-------AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 409 ~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++.+++ ..+..+.| |||.|+|+|++++++..
T Consensus 425 ~~~~~~a~~~~~~a~~~L~~y~W------PGNvREL~nvier~~i~ 464 (538)
T PRK15424 425 APFSAALRQGLQQCETLLLHYDW------PGNVRELRNLMERLALF 464 (538)
T ss_pred CCCCHHHHHhhHHHHHHHHhCCC------CchHHHHHHHHHHHHHh
Confidence 22444444 77888888 99999999999998874
No 173
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.68 E-value=2.6e-16 Score=130.15 Aligned_cols=119 Identities=44% Similarity=0.669 Sum_probs=72.4
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 127 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~ 127 (482)
|.||||+|+..++.+++++|+++ +.+.+..+..|.||||+|+..++.+++++|++.|++++..+..|.||+|+|+
T Consensus 7 g~t~l~~a~~~~~~~~i~~li~~----~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~- 81 (126)
T cd00204 7 GRTPLHLAASNGHLEVVKLLLEN----GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA- 81 (126)
T ss_pred CCCHHHHHHHcCcHHHHHHHHHc----CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH-
Confidence 66666666666666666666662 3444555666666666666666666666666666666666666666666666
Q ss_pred hccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHH
Q 011578 128 YSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 175 (482)
Q Consensus 128 ~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL 175 (482)
..++.+++++|++.|.+++..+..|.||++.+... +...+.++|
T Consensus 82 ---~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~L 125 (126)
T cd00204 82 ---RNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN-GHLEVVKLL 125 (126)
T ss_pred ---HcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc-CCHHHHHHh
Confidence 55566666666666666666666666666433332 444444443
No 174
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.68 E-value=2.4e-16 Score=159.78 Aligned_cols=204 Identities=18% Similarity=0.161 Sum_probs=150.3
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|.+...+.+.+.+..+ +....+|+++|++||||+++|++|++.. .....||+.++
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~--------------A~~~~pVLI~GE~GTGKe~lA~~IH~~S----~r~~~pfv~in 270 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY--------------ARSDATVLILGESGTGKELVAQAIHQLS----GRRDFPFVAIN 270 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCcCHHHHHHHHHHhc----CcCCCCEEEec
Confidence 45788999998877777765433 3466789999999999999999999843 34567999999
Q ss_pred cccccc-----cccccchh--------hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc----
Q 011578 283 RTDLVG-----EFVGHTGP--------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---- 345 (482)
Q Consensus 283 ~~~~~~-----~~~g~~~~--------~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---- 345 (482)
|..+.. ..+|+... .-...|+.+.+|+||||||+.|....| ..|+..++++.
T Consensus 271 C~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q-----------~~Ll~~L~~~~~~r~ 339 (526)
T TIGR02329 271 CGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQ-----------TRLLRVLEEREVVRV 339 (526)
T ss_pred cccCChhHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCHHHH-----------HHHHHHHhcCcEEec
Confidence 986532 35554221 123578889999999999999998655 78888887643
Q ss_pred ---------EEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcc
Q 011578 346 ---------VVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSC 411 (482)
Q Consensus 346 ---------~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~ 411 (482)
+.+|++++.+....+-. -.+.|..|+ ...|.+|++.. +++..+++.++.+... .....+
T Consensus 340 g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~-------~~~~~~ 412 (526)
T TIGR02329 340 GGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAA-------ALRLPD 412 (526)
T ss_pred CCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHH-------HcCCCC
Confidence 36777776655432211 123445577 46888888885 8999999999987643 112347
Q ss_pred cHHHHHH-------HHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 412 SMDAIAA-------LIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 412 ~~~~l~~-------~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
+++++.. +..+.| |||.|+|++++++++...
T Consensus 413 ~~~a~~~~~~~~~~L~~y~W------PGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 413 SEAAAQVLAGVADPLQRYPW------PGNVRELRNLVERLALEL 450 (526)
T ss_pred CHHHHHHhHHHHHHHHhCCC------CchHHHHHHHHHHHHHhc
Confidence 8888887 899999 999999999999998753
No 175
>PRK04195 replication factor C large subunit; Provisional
Probab=99.68 E-value=1.2e-15 Score=155.32 Aligned_cols=184 Identities=19% Similarity=0.265 Sum_probs=125.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..+++++|++.+++++..|+.... ...++.++||+||||||||++|+++|++++. .+++++
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~------------~g~~~~~lLL~GppG~GKTtla~ala~el~~-------~~ieln 71 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWL------------KGKPKKALLLYGPPGVGKTSLAHALANDYGW-------EVIELN 71 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHh------------cCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-------CEEEEc
Confidence 468899999999999999865432 1123678999999999999999999998865 788888
Q ss_pred cccccccccccchhhHHHHHHh---------cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcE-EEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKE---------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV-VVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~---------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~vi~~~ 352 (482)
+++.... ..+..++.. ....||+|||+|.+..... ...++.|+..++.... +|+.++
T Consensus 72 asd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~~~~~iIli~n 138 (482)
T PRK04195 72 ASDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKKAKQPIILTAN 138 (482)
T ss_pred ccccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHcCCCCEEEecc
Confidence 8764321 112222111 2457999999999976321 1334666666766443 344443
Q ss_pred CchhHHHHHhcCc-cccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 353 YSEPMKRVIASNE-GFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 353 ~~~~~~~~~~~~~-~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
..... .+ .+++|+ ..|+|++|+.+++..+++..+.++. ..++++++..++... .
T Consensus 139 ~~~~~------~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~eg-----------i~i~~eaL~~Ia~~s-------~ 193 (482)
T PRK04195 139 DPYDP------SLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEG-----------IECDDEALKEIAERS-------G 193 (482)
T ss_pred Ccccc------chhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc-------C
Confidence 22221 33 566666 8899999999999999999887653 346788999998865 3
Q ss_pred cCcchhHHHHHH
Q 011578 432 MNGGLVDPMLVN 443 (482)
Q Consensus 432 ~~~~~l~~~~~~ 443 (482)
++.|.+.+.++.
T Consensus 194 GDlR~ain~Lq~ 205 (482)
T PRK04195 194 GDLRSAINDLQA 205 (482)
T ss_pred CCHHHHHHHHHH
Confidence 444444444443
No 176
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1e-15 Score=162.12 Aligned_cols=188 Identities=19% Similarity=0.202 Sum_probs=131.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--------- 273 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~--------- 273 (482)
..|++|+|++.+++.|...+.. ...+..+||+||+|||||++|++||+.+.+....
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~---------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDS---------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh---------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 4789999999999998877431 1123347999999999999999999999742110
Q ss_pred ----------CCCCeEEeecccccccccccchhhHHHHHH-------hcCCcEEEEecccccccCCCCCCChhHHHHHHH
Q 011578 274 ----------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-------EAEGGILFVDEAYRLIPMQKADDKDYGIEALEE 336 (482)
Q Consensus 274 ----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ 336 (482)
....|++++..... ....++++.+ ..+..|+||||+|+|.. ...|.
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~Na 139 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHG------GVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGFNA 139 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccC------CHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHHHH
Confidence 11223444332210 1122333322 13458999999999987 44599
Q ss_pred HHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHH
Q 011578 337 IMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD 414 (482)
Q Consensus 337 ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 414 (482)
||..|++ ..+++|++++.. +.+ .+.|++|+ ..++|..++.+++.++|+.+++++. ..++.+
T Consensus 140 LLK~LEEpP~~~~fIl~tt~~--~kL---l~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EG-----------v~id~e 202 (824)
T PRK07764 140 LLKIVEEPPEHLKFIFATTEP--DKV---IGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEG-----------VPVEPG 202 (824)
T ss_pred HHHHHhCCCCCeEEEEEeCCh--hhh---hHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcC-----------CCCCHH
Confidence 9999997 566666665332 233 57789998 8999999999999999999887653 345778
Q ss_pred HHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 415 AIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
++..++... .++.|.+.+.+++.+.
T Consensus 203 al~lLa~~s-------gGdlR~Al~eLEKLia 227 (824)
T PRK07764 203 VLPLVIRAG-------GGSVRDSLSVLDQLLA 227 (824)
T ss_pred HHHHHHHHc-------CCCHHHHHHHHHHHHh
Confidence 888877765 5677888888887663
No 177
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.5e-15 Score=154.34 Aligned_cols=190 Identities=18% Similarity=0.254 Sum_probs=129.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++|+|++.+++.|...+.. ...+..+||+||||||||++|+++|+.+.......
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~---------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQE---------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 5688999999999998876421 12346799999999999999999999987421111
Q ss_pred ---------CCCeEEeecccccccccccchhhHHHHHH----hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhh
Q 011578 275 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIK----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM 341 (482)
Q Consensus 275 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l 341 (482)
...++++++..-. .+. ..+.+.+.+. .....||||||+|.|.. ...+.|+..|
T Consensus 78 sC~~i~~g~hpDv~eId~a~~~--~Id-~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-----------~a~naLLk~L 143 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGASNR--GID-DAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-----------EAFNALLKTL 143 (624)
T ss_pred HHHHHhcCCCCceEEEeccccc--CHH-HHHHHHHHHHhhhhcCCceEEEEEChHhCCH-----------HHHHHHHHHh
Confidence 1123444332110 010 1112222222 12448999999999976 4458999999
Q ss_pred cC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHH
Q 011578 342 DG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL 419 (482)
Q Consensus 342 ~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (482)
++ ..+++|++|+.... + .+.+++|+ ..|+|++++.+++..+++..+.+.. ..++.+++..+
T Consensus 144 EEP~~~~ifILaTt~~~k--l---l~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~eg-----------i~id~eal~lI 206 (624)
T PRK14959 144 EEPPARVTFVLATTEPHK--F---PVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREG-----------VDYDPAAVRLI 206 (624)
T ss_pred hccCCCEEEEEecCChhh--h---hHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHH
Confidence 86 56666666543222 2 45678898 7899999999999999998877542 35688888888
Q ss_pred HHHHhhHhhccccCcchhHHHHHHHH
Q 011578 420 IEKETTEKQRREMNGGLVDPMLVNAR 445 (482)
Q Consensus 420 ~~~~~~~~~~~~~~~~~l~~~~~~a~ 445 (482)
+... .|+.|.+.++++++.
T Consensus 207 A~~s-------~GdlR~Al~lLeqll 225 (624)
T PRK14959 207 ARRA-------AGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHc-------CCCHHHHHHHHHHHH
Confidence 8765 566777778877653
No 178
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.67 E-value=2.1e-15 Score=161.79 Aligned_cols=224 Identities=18% Similarity=0.268 Sum_probs=153.6
Q ss_pred HHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC
Q 011578 199 DELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 277 (482)
Q Consensus 199 ~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~ 277 (482)
..+...+. .++|++...+.+.+.+... ..+...+..+...++|+||||||||.+|++||+.+... ...
T Consensus 558 ~~l~~~L~~~v~GQ~~Av~~v~~~i~~~-------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~----~~~ 626 (852)
T TIGR03345 558 LSLPDRLAERVIGQDHALEAIAERIRTA-------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG----EQN 626 (852)
T ss_pred HHHHHHhcCeEcChHHHHHHHHHHHHHH-------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC----Ccc
Confidence 34445554 5899999988888775332 23333333333458999999999999999999988531 225
Q ss_pred eEEeecccc---------cc---cccccc-hhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC
Q 011578 278 VTEVQRTDL---------VG---EFVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG 344 (482)
Q Consensus 278 ~~~~~~~~~---------~~---~~~g~~-~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 344 (482)
++.++.+++ .+ .|+|.. +..+.+.++..+.+||+||||+++++ .+.+.|++.|+.|
T Consensus 627 ~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~-----------~v~~~Llq~ld~g 695 (852)
T TIGR03345 627 LITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHP-----------DVLELFYQVFDKG 695 (852)
T ss_pred eEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCH-----------HHHHHHHHHhhcc
Confidence 667776543 22 256643 34566777878889999999999887 6668999999864
Q ss_pred c-------------EEEEEecCchh--H-------------HH---HH------hcCccccCCCcceeeCCCCCHHHHHH
Q 011578 345 K-------------VVVIFAGYSEP--M-------------KR---VI------ASNEGFCRRVTKFFHFNDFNSEELAK 387 (482)
Q Consensus 345 ~-------------~~vi~~~~~~~--~-------------~~---~~------~~~~~l~~R~~~~i~~~~~~~~~~~~ 387 (482)
. .++|+|++-.. + .. .+ .-.|+|++|++ +|.|.+++.+++.+
T Consensus 696 ~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~ 774 (852)
T TIGR03345 696 VMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAA 774 (852)
T ss_pred eeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHH
Confidence 2 46666654210 0 00 00 01499999996 89999999999999
Q ss_pred HHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhh
Q 011578 388 ILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDL 450 (482)
Q Consensus 388 il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 450 (482)
|+...+.+..++.... +.+...++++++..++...++ ...++|.+++.++.-......
T Consensus 775 Iv~~~L~~l~~rl~~~-~gi~l~i~d~a~~~La~~g~~----~~~GAR~L~r~Ie~~i~~~la 832 (852)
T TIGR03345 775 IVRLKLDRIARRLKEN-HGAELVYSEALVEHIVARCTE----VESGARNIDAILNQTLLPELS 832 (852)
T ss_pred HHHHHHHHHHHHHHHh-cCceEEECHHHHHHHHHHcCC----CCCChHHHHHHHHHHHHHHHH
Confidence 9999998765432211 123456899999999987641 234679999998886665543
No 179
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.8e-15 Score=154.27 Aligned_cols=189 Identities=18% Similarity=0.201 Sum_probs=133.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC-----
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR----- 277 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~----- 277 (482)
..|++++|++.+++.+...+.. ...+..+||+||||+|||++|+++|+.+.........+
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~---------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ---------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc---------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 5789999999999988876431 11233469999999999999999999986532111111
Q ss_pred ------------eEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 278 ------------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 278 ------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
+++++++. ......++++++.+ +..|+||||+|.+.. .+.|.|+
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~naLL 140 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNAML 140 (527)
T ss_pred HHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHHHH
Confidence 22332211 01223455555533 337999999999976 4558999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|++ +.+++|++|+... .+ .+.+++|+ ..++|++++.+++...+...++++. ..++.+++
T Consensus 141 K~LEepp~~~~fIL~t~d~~--ki---l~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~eg-----------i~~~~~al 203 (527)
T PRK14969 141 KTLEEPPEHVKFILATTDPQ--KI---PVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQEN-----------IPFDATAL 203 (527)
T ss_pred HHHhCCCCCEEEEEEeCChh--hC---chhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99988 5666777654332 22 45688898 9999999999999999998887653 34577888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++... .|+.|.+.+.++++...
T Consensus 204 ~~la~~s-------~Gslr~al~lldqai~~ 227 (527)
T PRK14969 204 QLLARAA-------AGSMRDALSLLDQAIAY 227 (527)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 8888764 57788888998887654
No 180
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.66 E-value=9.4e-16 Score=126.78 Aligned_cols=123 Identities=38% Similarity=0.562 Sum_probs=110.5
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHH
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpL 89 (482)
+..|.||||.|+..|+.+.++.++.. +...+..+.. |.||||+|+..++.+++++|+.+ +.+++..+..|.||+
T Consensus 4 ~~~g~t~l~~a~~~~~~~~i~~li~~-~~~~~~~~~~-g~~~l~~a~~~~~~~~~~~ll~~----~~~~~~~~~~~~~~l 77 (126)
T cd00204 4 DEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDND-GRTPLHLAAKNGHLEIVKLLLEK----GADVNARDKDGNTPL 77 (126)
T ss_pred CcCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCccCCC-CCcHHHHHHHcCCHHHHHHHHHc----CCCccccCCCCCCHH
Confidence 46799999999999999999999865 4444666665 99999999999999999999994 567888889999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHh
Q 011578 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL 142 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll 142 (482)
|+|+..++.+++++|++.|.+++..+..|.||+++|. ..++.+++++|+
T Consensus 78 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~Ll 126 (126)
T cd00204 78 HLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAA----KNGHLEVVKLLL 126 (126)
T ss_pred HHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH----hcCCHHHHHHhC
Confidence 9999999999999999999999999999999999999 778999999875
No 181
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.66 E-value=1.7e-16 Score=116.30 Aligned_cols=115 Identities=27% Similarity=0.375 Sum_probs=99.0
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 127 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~ 127 (482)
|.--+.|++.+|..+-|+..+. .+.++|..- .|++|||+|+-.|..+++++|+..||+++.+|++|-|||..|+
T Consensus 2 ~d~~~~W~vkNG~~DeVk~~v~----~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAv- 75 (117)
T KOG4214|consen 2 GDMSVAWNVKNGEIDEVKQSVN----EGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAV- 75 (117)
T ss_pred cchhHhhhhccCcHHHHHHHHH----ccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHH-
Confidence 3345789999999999999888 567777654 7999999999999999999999999999999999999999999
Q ss_pred hccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHH
Q 011578 128 YSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 175 (482)
Q Consensus 128 ~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL 175 (482)
-.||.++|++|++.|||-..+..+|.+.+ -++. .+.+.++|
T Consensus 76 ---wEGH~~cVklLL~~GAdrt~~~PdG~~~~-eate---~edIr~LL 116 (117)
T KOG4214|consen 76 ---WEGHRDCVKLLLQNGADRTIHAPDGTALI-EATE---EEDIRELL 116 (117)
T ss_pred ---HHhhHHHHHHHHHcCcccceeCCCchhHH-hhcc---HHHHHHHh
Confidence 67899999999999999999999998877 4433 34455444
No 182
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.66 E-value=3.2e-16 Score=165.57 Aligned_cols=205 Identities=16% Similarity=0.182 Sum_probs=147.9
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|.+...+.+.+.+..+ +....+|+|+|++||||+++|++|++.. .....+|+.+++
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~--------------a~~~~pvli~Ge~GtGK~~~A~~ih~~s----~r~~~pfv~vnc 384 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQA--------------AKSSFPVLLCGEEGVGKALLAQAIHNES----ERAAGPYIAVNC 384 (638)
T ss_pred cccceEECCHHHHHHHHHHHHH--------------hCcCCCEEEECCCCcCHHHHHHHHHHhC----CccCCCeEEEEC
Confidence 4778888887766666554433 2356679999999999999999999844 334569999999
Q ss_pred cccc-----ccccccc----hhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC----------
Q 011578 284 TDLV-----GEFVGHT----GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---------- 344 (482)
Q Consensus 284 ~~~~-----~~~~g~~----~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------- 344 (482)
+.+. +.++|.. .......|+.|.+|+||||||+.|....| ..|+..++++
T Consensus 385 ~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q-----------~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 385 QLYPDEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQ-----------SALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred CCCChHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHH-----------HHHHHHHhcCcEEeCCCCce
Confidence 7653 3456542 11112357788999999999999998555 7788887754
Q ss_pred ---cEEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 345 ---KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 345 ---~~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
++.+|++|+.+....... -.+.|..|+ ...|.+|++.. +++..+++.++.+.... ++ ....++++++
T Consensus 454 ~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~---~~--~~~~~s~~a~ 528 (638)
T PRK11388 454 IPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKR---FS--TRLKIDDDAL 528 (638)
T ss_pred EEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHH---hC--CCCCcCHHHH
Confidence 356888877665332211 023444566 56778888874 78999999999876431 12 2346899999
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
..+..+.| +||.|+|+++++.++...
T Consensus 529 ~~L~~y~W------PGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 529 ARLVSYRW------PGNDFELRSVIENLALSS 554 (638)
T ss_pred HHHHcCCC------CChHHHHHHHHHHHHHhC
Confidence 99999999 999999999999988653
No 183
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.66 E-value=2.6e-15 Score=138.31 Aligned_cols=185 Identities=14% Similarity=0.156 Sum_probs=121.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhc-CCcEEEEeccccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIP 320 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-~~~vl~iDE~d~l~~ 320 (482)
.+.+++|+||||||||++|+++++.+...+ .+++.++++.+.... .+.+... ...+|+|||+|.+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~----~~~~~i~~~~~~~~~--------~~~~~~~~~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERG----KSAIYLPLAELAQAD--------PEVLEGLEQADLVCLDDVEAIAG 104 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcC----CcEEEEeHHHHHHhH--------HHHHhhcccCCEEEEeChhhhcC
Confidence 567899999999999999999999886432 356777776654321 2233322 347999999999875
Q ss_pred CCCCCCChhHHHHHHHHHhhhc-CCcEEEEEecCchhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 321 MQKADDKDYGIEALEEIMSVMD-GGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~l~-~~~~~vi~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
... ....+-.++..+. .+.. +|++++..+.. .-...+.+.+|+ ...+.+|+|+.+++..+++.++.+..
T Consensus 105 ~~~------~~~~L~~~l~~~~~~~~~-iIits~~~~~~-~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~ 176 (226)
T TIGR03420 105 QPE------WQEALFHLYNRVREAGGR-LLIAGRAAPAQ-LPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG 176 (226)
T ss_pred ChH------HHHHHHHHHHHHHHcCCe-EEEECCCChHH-CCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC
Confidence 321 1123333333332 3344 44444433321 101126677787 46899999999999999988765431
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHH
Q 011578 398 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 474 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al 474 (482)
..++++++..++.. | ++|.++++++++.+...... ....|+.+.+++.+
T Consensus 177 -----------~~~~~~~l~~L~~~-~------~gn~r~L~~~l~~~~~~~~~----------~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 177 -----------LQLPDEVADYLLRH-G------SRDMGSLMALLDALDRASLA----------AKRKITIPFVKEVL 225 (226)
T ss_pred -----------CCCCHHHHHHHHHh-c------cCCHHHHHHHHHHHHHHHHH----------hCCCCCHHHHHHHh
Confidence 45788999999984 6 89999999999987653211 11347777666654
No 184
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.66 E-value=1.8e-15 Score=154.97 Aligned_cols=207 Identities=20% Similarity=0.220 Sum_probs=152.0
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
...+++|.+...+.+.+.+..+ +....+|+++|++||||+++|++|+.... ....+|+.++|
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~--------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~----r~~~p~v~v~c 246 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV--------------AASDLNVLILGETGVGKELVARAIHAASP----RADKPLVYLNC 246 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCccHHHHHHHHHHhCC----cCCCCeEEEEc
Confidence 4557899988888777765544 34677899999999999999999998543 34569999999
Q ss_pred ccccc-----cccccchh-------hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-------
Q 011578 284 TDLVG-----EFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 344 (482)
Q Consensus 284 ~~~~~-----~~~g~~~~-------~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~------- 344 (482)
+.+.. .++|+... .....|+.+.+|+|||||||.|.+..| ..|+..++++
T Consensus 247 ~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q-----------~~Ll~~l~~~~~~~~g~ 315 (509)
T PRK05022 247 AALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQ-----------AKLLRVLQYGEIQRVGS 315 (509)
T ss_pred ccCChHHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHH-----------HHHHHHHhcCCEeeCCC
Confidence 87643 34554211 112357889999999999999998555 7788877653
Q ss_pred ------cEEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccH
Q 011578 345 ------KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSM 413 (482)
Q Consensus 345 ------~~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 413 (482)
.+.+|++|+.+....+.. -.+.|..|+ ...|.+|++.. +++..+++.++.+.... ++. -...+++
T Consensus 316 ~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~---~~~-~~~~~s~ 391 (509)
T PRK05022 316 DRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRAR---LGL-RSLRLSP 391 (509)
T ss_pred CcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHH---cCC-CCCCCCH
Confidence 357888877665433211 134455566 44688888874 88999999998876431 122 2357899
Q ss_pred HHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhh
Q 011578 414 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD 449 (482)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 449 (482)
+++..+..+.| +||.|+|++++++|+....
T Consensus 392 ~a~~~L~~y~W------PGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 392 AAQAALLAYDW------PGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHHHHHHhCCC------CCcHHHHHHHHHHHHHhcC
Confidence 99999999999 9999999999999987653
No 185
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.65 E-value=6.1e-16 Score=158.36 Aligned_cols=208 Identities=17% Similarity=0.221 Sum_probs=149.6
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++++|.+...+++.+.+..+ +....+++++|++||||+++|++++... .....+|+.+
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~--------------A~~~~pvlI~GE~GtGK~~lA~aiH~~s----~r~~~pfv~i 261 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKL--------------AMLDAPLLITGDTGTGKDLLAYACHLRS----PRGKKPFLAL 261 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCccHHHHHHHHHHhC----CCCCCCeEEe
Confidence 357888999988766666654333 2356679999999999999999998743 3445699999
Q ss_pred ecccccc-----cccccch-------hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-----
Q 011578 282 QRTDLVG-----EFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----- 344 (482)
Q Consensus 282 ~~~~~~~-----~~~g~~~-------~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~----- 344 (482)
+|+.+.. ..+|... ......|+.|.+|+||||||+.|.+..| ..|+..++++
T Consensus 262 nca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q-----------~~Ll~~l~~~~~~~~ 330 (520)
T PRK10820 262 NCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQ-----------AKLLRFLNDGTFRRV 330 (520)
T ss_pred ccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHH-----------HHHHHHHhcCCcccC
Confidence 9987643 2345321 1123468889999999999999998555 7777777653
Q ss_pred --------cEEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcc
Q 011578 345 --------KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSC 411 (482)
Q Consensus 345 --------~~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~ 411 (482)
.+.||++|+.+.....-. -.+.|..|+ ...|.+|++.. +++..+++.++.+.... +|. ..+.+
T Consensus 331 g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~---~g~-~~~~l 406 (520)
T PRK10820 331 GEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADE---QGV-PRPKL 406 (520)
T ss_pred CCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHH---cCC-CCCCc
Confidence 357777766655432210 134566676 46788888875 78888888888876431 122 13478
Q ss_pred cHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 412 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 412 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
+++++..+..+.| +||.|+|++++++|+...
T Consensus 407 s~~a~~~L~~y~W------PGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 407 AADLNTVLTRYGW------PGNVRQLKNAIYRALTQL 437 (520)
T ss_pred CHHHHHHHhcCCC------CCHHHHHHHHHHHHHHhC
Confidence 9999999999999 999999999999998753
No 186
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.65 E-value=3.2e-15 Score=160.88 Aligned_cols=224 Identities=20% Similarity=0.311 Sum_probs=152.8
Q ss_pred HHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC
Q 011578 199 DELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 277 (482)
Q Consensus 199 ~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~ 277 (482)
..+...+. .++|++.+.+.+...+.... .+...+..+...++|+||||||||++|++||+.+... ..+
T Consensus 560 ~~l~~~l~~~viGQ~~ai~~l~~~i~~~~-------~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~----~~~ 628 (857)
T PRK10865 560 LRMEQELHHRVIGQNEAVEAVSNAIRRSR-------AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS----DDA 628 (857)
T ss_pred HHHHHHhCCeEeCCHHHHHHHHHHHHHHH-------hcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC----CCc
Confidence 34444443 57899999888887754332 2222222233578999999999999999999987532 236
Q ss_pred eEEeecccccc-----c-------ccccc-hhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC
Q 011578 278 VTEVQRTDLVG-----E-------FVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG 344 (482)
Q Consensus 278 ~~~~~~~~~~~-----~-------~~g~~-~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 344 (482)
++.++.+.+.. . |+|.. +..+.+.+...+++||||||++++.+ .+.+.|++.|++|
T Consensus 629 ~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~-----------~v~~~Ll~ile~g 697 (857)
T PRK10865 629 MVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP-----------DVFNILLQVLDDG 697 (857)
T ss_pred EEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH-----------HHHHHHHHHHhhC
Confidence 77777765422 1 33432 23455666666779999999999987 5568999998764
Q ss_pred c-------------EEEEEecCch--hH------------HH----HH--hcCccccCCCcceeeCCCCCHHHHHHHHHH
Q 011578 345 K-------------VVVIFAGYSE--PM------------KR----VI--ASNEGFCRRVTKFFHFNDFNSEELAKILHI 391 (482)
Q Consensus 345 ~-------------~~vi~~~~~~--~~------------~~----~~--~~~~~l~~R~~~~i~~~~~~~~~~~~il~~ 391 (482)
. .++|+|++.. .+ .. .+ .-.|+|++|+|.++.|.+++.+++.+|++.
T Consensus 698 ~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~ 777 (857)
T PRK10865 698 RLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQI 777 (857)
T ss_pred ceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHH
Confidence 2 2466665531 10 11 00 114899999999999999999999999999
Q ss_pred HHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhh
Q 011578 392 KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDL 450 (482)
Q Consensus 392 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 450 (482)
++.+...+....+ +...++++++..++...+ ....++|.|+.++++-+.....
T Consensus 778 ~L~~l~~rl~~~g--i~l~is~~al~~L~~~gy----~~~~GARpL~r~I~~~i~~~la 830 (857)
T PRK10865 778 QLQRLYKRLEERG--YEIHISDEALKLLSENGY----DPVYGARPLKRAIQQQIENPLA 830 (857)
T ss_pred HHHHHHHHHHhCC--CcCcCCHHHHHHHHHcCC----CccCChHHHHHHHHHHHHHHHH
Confidence 9987643322223 345789999999998654 1234689999999988777444
No 187
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.3e-15 Score=141.64 Aligned_cols=194 Identities=19% Similarity=0.363 Sum_probs=137.5
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccccc-hhhHHHHHHh-------cCCcEEEEec
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHT-GPKTRRRIKE-------AEGGILFVDE 314 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~-------a~~~vl~iDE 314 (482)
.++||.||+|+|||+||+.||+.+.. ||..+++..+... |+|+. +.-+.+++.. |..||+||||
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldV-------PfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDE 299 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDV-------PFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDE 299 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCC-------CeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEeh
Confidence 57999999999999999999999987 9999999988654 99985 4445666654 4559999999
Q ss_pred ccccccCCCCC--C-ChhHHHHHHHHHhhhcCC-----------------------cEEEEEecCchhHHHHHhcC----
Q 011578 315 AYRLIPMQKAD--D-KDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSEPMKRVIASN---- 364 (482)
Q Consensus 315 ~d~l~~~~~~~--~-~~~~~~~~~~ll~~l~~~-----------------------~~~vi~~~~~~~~~~~~~~~---- 364 (482)
+|++..+..+- . +-.+..+...||..+++. .+.+|+.+--..++.++...
T Consensus 300 vDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~ 379 (564)
T KOG0745|consen 300 VDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDK 379 (564)
T ss_pred hhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcch
Confidence 99998654321 1 223457778888888761 13333333111112111100
Q ss_pred -----------------------------------------------ccccCCCcceeeCCCCCHHHHHHHHH---HHHh
Q 011578 365 -----------------------------------------------EGFCRRVTKFFHFNDFNSEELAKILH---IKMN 394 (482)
Q Consensus 365 -----------------------------------------------~~l~~R~~~~i~~~~~~~~~~~~il~---~~l~ 394 (482)
|.|.+||+..+.|..++.+++.+||. ..|-
T Consensus 380 slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~ 459 (564)
T KOG0745|consen 380 SLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALG 459 (564)
T ss_pred hcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHH
Confidence 99999999999999999999999984 2222
Q ss_pred ccccccccccc-cccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhh
Q 011578 395 NQTEDSLLYGF-KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDL 450 (482)
Q Consensus 395 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 450 (482)
++.+.. +++ .+...++++++..+++... .+...+|.||.++|.+...+.-
T Consensus 460 ~Qyk~l--f~~~nV~L~fTe~Al~~IAq~Al----~r~TGARgLRsIlE~~Lleamf 510 (564)
T KOG0745|consen 460 KQYKKL--FGMDNVELHFTEKALEAIAQLAL----KRKTGARGLRSILESLLLEAMF 510 (564)
T ss_pred HHHHHH--hccCCeeEEecHHHHHHHHHHHH----hhccchHHHHHHHHHHHhhhcc
Confidence 222211 122 5556789999999998653 4456789999999999887643
No 188
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=6.2e-15 Score=148.30 Aligned_cols=190 Identities=19% Similarity=0.217 Sum_probs=134.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--------- 273 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~--------- 273 (482)
..|++++|++.+++.+...+.. ...+..+||+||||+|||++|+++|+.+......
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~---------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDN---------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHc---------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 5789999999999998876321 1133446999999999999999999988532111
Q ss_pred --------CCCCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 274 --------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 274 --------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
....++++++++- .+-..++++++. ++..|++|||+|.+.. .+.+.|+
T Consensus 76 ~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-----------~A~NALL 138 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-----------EAFNALL 138 (535)
T ss_pred HHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHH
Confidence 1112333332211 012345665544 2347999999999986 4558999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|++ ..+++|++++. + ..+ .|++++|+ ..++|.+++.+++...++..++++. ..++++++
T Consensus 139 K~LEEpp~~t~FIL~ttd-~-~kL---~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EG-----------i~i~~~Al 201 (535)
T PRK08451 139 KTLEEPPSYVKFILATTD-P-LKL---PATILSRT-QHFRFKQIPQNSIISHLKTILEKEG-----------VSYEPEAL 201 (535)
T ss_pred HHHhhcCCceEEEEEECC-h-hhC---chHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 44555555433 2 333 68899997 8999999999999999999888753 35678888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
..++... .|+.|.+.+.++++....
T Consensus 202 ~~Ia~~s-------~GdlR~alnlLdqai~~~ 226 (535)
T PRK08451 202 EILARSG-------NGSLRDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHc-------CCcHHHHHHHHHHHHHhc
Confidence 8888865 577888888888877643
No 189
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=4.6e-15 Score=153.10 Aligned_cols=190 Identities=21% Similarity=0.212 Sum_probs=134.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++++|++.+++.|...+.. ...+..+||+||+|+|||++|+++|+.+.......
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~---------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT---------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 5789999999999998876421 12344579999999999999999999986432111
Q ss_pred ---------CCCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 275 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 275 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
...++++++.+- .....++++.+. ++..|++|||+|.|.. .+.|.|+
T Consensus 78 ~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~naLL 140 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNALL 140 (576)
T ss_pred HHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHHHH
Confidence 112344433221 112234444433 2447999999999986 4459999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|++ ..+++|++|+.. ..+ .+++++|+ ..++|..++.+++...++..+++.. ..++.+++
T Consensus 141 k~LEepp~~~~fIl~t~~~--~kl---~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~eg-----------i~i~~~al 203 (576)
T PRK14965 141 KTLEEPPPHVKFIFATTEP--HKV---PITILSRC-QRFDFRRIPLQKIVDRLRYIADQEG-----------ISISDAAL 203 (576)
T ss_pred HHHHcCCCCeEEEEEeCCh--hhh---hHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhC-----------CCCCHHHH
Confidence 99987 456666665432 233 67789998 8999999999999999998888653 35678888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
..++... .|+.|.+.+.++++....
T Consensus 204 ~~la~~a-------~G~lr~al~~Ldqliay~ 228 (576)
T PRK14965 204 ALVARKG-------DGSMRDSLSTLDQVLAFC 228 (576)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHhc
Confidence 8888765 577788888888776543
No 190
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=5.6e-15 Score=151.74 Aligned_cols=188 Identities=21% Similarity=0.229 Sum_probs=134.3
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC-------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 275 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~------- 275 (482)
..|++++|++.+++.|...+.. ...+..+||+||+|+|||++|+++|+.+........
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~---------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET---------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 4788999999999999886421 124557999999999999999999999875432111
Q ss_pred ---------------CCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHH
Q 011578 276 ---------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEA 333 (482)
Q Consensus 276 ---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~ 333 (482)
..++++++++ ..| -..++++++.+ +..|++|||+|.+.. ..
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s----~~g--vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a 148 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAAS----HTG--VDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AA 148 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccc----cCC--HHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HH
Confidence 1123333221 111 23455555433 458999999999976 45
Q ss_pred HHHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcc
Q 011578 334 LEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 411 (482)
Q Consensus 334 ~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~ 411 (482)
.+.|+..|++ ..+++|++++.. ..+ .+.+++|+ ..|.|..++.+++...++..++++. ..+
T Consensus 149 ~naLLKtLEePp~~~~fIl~tte~--~kl---l~tI~SRc-q~~~f~~l~~~el~~~L~~i~~keg-----------i~i 211 (598)
T PRK09111 149 FNALLKTLEEPPPHVKFIFATTEI--RKV---PVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEG-----------VEV 211 (598)
T ss_pred HHHHHHHHHhCCCCeEEEEEeCCh--hhh---hHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCC
Confidence 5899999987 556666654322 223 46688998 8999999999999999999988653 356
Q ss_pred cHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 412 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 412 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
+.+++..++... .|+.|.+.+.++++..
T Consensus 212 ~~eAl~lIa~~a-------~Gdlr~al~~Ldkli~ 239 (598)
T PRK09111 212 EDEALALIARAA-------EGSVRDGLSLLDQAIA 239 (598)
T ss_pred CHHHHHHHHHHc-------CCCHHHHHHHHHHHHh
Confidence 778888888765 5777888888877654
No 191
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.64 E-value=1.3e-14 Score=148.84 Aligned_cols=223 Identities=18% Similarity=0.168 Sum_probs=145.2
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCce-eEecCCCCchHHHHHHHHHHHHHc---CCCCCCCeEEe
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHM-AFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTEV 281 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ll~GppGtGKT~la~~la~~~~~~---~~~~~~~~~~~ 281 (482)
+.|.+.+...++|..++..... ...+.++ +++|+||||||++++.+.+++... .......++.+
T Consensus 755 D~LPhREeEIeeLasfL~paIk------------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYI 822 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK------------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEI 822 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh------------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEE
Confidence 4577888888888877554421 1233344 699999999999999999988532 11222457888
Q ss_pred eccccccc----------cccc-------chhhHHHHHHhc---C--CcEEEEecccccccCCCCCCChhHHHHHHHHHh
Q 011578 282 QRTDLVGE----------FVGH-------TGPKTRRRIKEA---E--GGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 339 (482)
Q Consensus 282 ~~~~~~~~----------~~g~-------~~~~~~~~~~~a---~--~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~ 339 (482)
++..+... +.|. +...+..+|... . ..||+|||||.|....+ .++-.|+.
T Consensus 823 NCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~Q--------DVLYnLFR 894 (1164)
T PTZ00112 823 NGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQ--------KVLFTLFD 894 (1164)
T ss_pred eCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHH--------HHHHHHHH
Confidence 88543211 1122 223344556543 1 25999999999987544 44544444
Q ss_pred hhc--CCcEEEEEecCchhHHHHHhcCccccCCCc-ceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 340 VMD--GGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 340 ~l~--~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
+.. +..++||+.++.-.+. -..+|.+++||. ..+.|++|+.+++.+||+..+.... .-++++++
T Consensus 895 ~~~~s~SKLiLIGISNdlDLp--erLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~-----------gVLdDdAI 961 (1164)
T PTZ00112 895 WPTKINSKLVLIAISNTMDLP--ERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCK-----------EIIDHTAI 961 (1164)
T ss_pred HhhccCCeEEEEEecCchhcc--hhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCC-----------CCCCHHHH
Confidence 432 4668888876533222 123788899984 4599999999999999999887521 24677888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
..+++... ...|++|..-++++.|.+.. +...|+.+|+.+|+.++
T Consensus 962 ELIArkVA----q~SGDARKALDILRrAgEik------------egskVT~eHVrkAleei 1006 (1164)
T PTZ00112 962 QLCARKVA----NVSGDIRKALQICRKAFENK------------RGQKIVPRDITEATNQL 1006 (1164)
T ss_pred HHHHHhhh----hcCCHHHHHHHHHHHHHhhc------------CCCccCHHHHHHHHHHH
Confidence 77776321 22577777778877777641 11268889999888765
No 192
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.64 E-value=4.3e-15 Score=143.98 Aligned_cols=179 Identities=20% Similarity=0.198 Sum_probs=112.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..+++++|++.+++.+..++. ....+..++|+||||+|||++|+++++.++. +++.++
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-------~~~~i~ 75 (316)
T PHA02544 18 STIDECILPAADKETFKSIVK---------------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-------EVLFVN 75 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHh---------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-------cceEec
Confidence 578899999999999888742 0123344556999999999999999998753 567777
Q ss_pred cccccccccccchhhHHHHHHh----cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHH
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKE----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMK 358 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~----a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~ 358 (482)
+++ +. +......+.+.... +...||+|||+|.+..+ .....+..+++....+. .+|++++.. .
T Consensus 76 ~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-------~~~~~L~~~le~~~~~~-~~Ilt~n~~--~ 142 (316)
T PHA02544 76 GSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-------DAQRHLRSFMEAYSKNC-SFIITANNK--N 142 (316)
T ss_pred cCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-------HHHHHHHHHHHhcCCCc-eEEEEcCCh--h
Confidence 765 21 11111112221111 34689999999988431 11233444444433344 444443322 2
Q ss_pred HHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHh
Q 011578 359 RVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 424 (482)
Q Consensus 359 ~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 424 (482)
.+ .|++++|| ..+.|+.|+.+++..+++.++........ .-...++++++..++...+
T Consensus 143 ~l---~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~----~~~~~i~~~al~~l~~~~~ 200 (316)
T PHA02544 143 GI---IEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILE----AEGVEVDMKVLAALVKKNF 200 (316)
T ss_pred hc---hHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHhcC
Confidence 22 78899999 68999999999999888776554321000 1124567888899888764
No 193
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=1.1e-14 Score=150.33 Aligned_cols=188 Identities=19% Similarity=0.244 Sum_probs=129.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++++|++.+++.|+..+.. ...+..+||+||+|+|||++|+++|+.+.......
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~---------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKS---------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 5789999999999988876421 12344579999999999999999999886532110
Q ss_pred ------CCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhh
Q 011578 275 ------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM 341 (482)
Q Consensus 275 ------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l 341 (482)
...+++++++. . .+...++++.+.+ +..|++|||+|.|.. .+.+.|+..|
T Consensus 80 ~~~~~~~~Dvieidaas----n--~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtL 142 (725)
T PRK07133 80 IENVNNSLDIIEMDAAS----N--NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTL 142 (725)
T ss_pred HHhhcCCCcEEEEeccc----c--CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHh
Confidence 01112222110 0 1122355554432 347999999999976 4569999999
Q ss_pred cC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHH
Q 011578 342 DG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL 419 (482)
Q Consensus 342 ~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (482)
++ ..+++|++|+.. ..+ .|++++|+ .+++|.+++.+++...++..+.+.. ..++.+++..+
T Consensus 143 EEPP~~tifILaTte~--~KL---l~TI~SRc-q~ieF~~L~~eeI~~~L~~il~keg-----------I~id~eAl~~L 205 (725)
T PRK07133 143 EEPPKHVIFILATTEV--HKI---PLTILSRV-QRFNFRRISEDEIVSRLEFILEKEN-----------ISYEKNALKLI 205 (725)
T ss_pred hcCCCceEEEEEcCCh--hhh---hHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHH
Confidence 87 456666665422 233 67889999 7999999999999999998887643 34567778877
Q ss_pred HHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 420 IEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 420 ~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
+... .|+.|.+.++++.+..
T Consensus 206 A~lS-------~GslR~AlslLekl~~ 225 (725)
T PRK07133 206 AKLS-------SGSLRDALSIAEQVSI 225 (725)
T ss_pred HHHc-------CCCHHHHHHHHHHHHH
Confidence 7754 5667778788776543
No 194
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.64 E-value=1.4e-14 Score=135.70 Aligned_cols=193 Identities=22% Similarity=0.200 Sum_probs=117.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc------cccccccccchhhHHH---------------
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT------DLVGEFVGHTGPKTRR--------------- 300 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~~~--------------- 300 (482)
...+++|.||||||||++|+++|+.++. +++.+++. ++++.+.|.....+..
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~-------~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDR-------PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQ 92 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCC-------CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccce
Confidence 3468999999999999999999987654 77766554 3444444322211111
Q ss_pred ------HHH-hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC------------------cEEEEEecCch
Q 011578 301 ------RIK-EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------------------KVVVIFAGYSE 355 (482)
Q Consensus 301 ------~~~-~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~------------------~~~vi~~~~~~ 355 (482)
++. ...+++|+|||++++.+. +.+.|+..|+++ .+.+|+|+++.
T Consensus 93 ~~~~g~l~~A~~~g~~lllDEi~r~~~~-----------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 93 NWVDNRLTLAVREGFTLVYDEFTRSKPE-----------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred eecCchHHHHHHcCCEEEEcchhhCCHH-----------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 111 235689999999998874 447777777652 34577776655
Q ss_pred hHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcc
Q 011578 356 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 435 (482)
Q Consensus 356 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 435 (482)
...-....++++.+|| ..+.++.|+.++..+|++.... . ... ..+.+..+..... + ....-..
T Consensus 162 ~~~g~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~~-~-----------~~~-~~~~iv~~~~~~R-~--~~~~~~~ 224 (262)
T TIGR02640 162 EYAGVHETQDALLDRL-ITIFMDYPDIDTETAILRAKTD-V-----------AED-SAATIVRLVREFR-A--SGDEITS 224 (262)
T ss_pred cccceecccHHHHhhc-EEEECCCCCHHHHHHHHHHhhC-C-----------CHH-HHHHHHHHHHHHH-h--hCCccCC
Confidence 3322222378899999 7899999999999999987642 1 111 2233333333322 1 1111112
Q ss_pred hhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 436 LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 436 ~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
.+|..+..+...+...+ ...++.+||.+....+-
T Consensus 225 ~~r~~i~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 258 (262)
T TIGR02640 225 GLRASLMIAEVATQQDI---------PVDVDDEDFVDLCIDIL 258 (262)
T ss_pred cHHHHHHHHHHHHHcCC---------CCCCCcHHHHHHHHHHh
Confidence 26666665555442221 23567888887766553
No 195
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=5e-15 Score=149.80 Aligned_cols=189 Identities=19% Similarity=0.243 Sum_probs=130.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++++|++.+++.+...+.. ...+..+||+||||+|||++|+++|+.+.......
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~---------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILN---------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 4688999999999988876321 12345699999999999999999999986432111
Q ss_pred ---------CCCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 275 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 275 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
...+++++++.. .| -..++++++. +...|++|||+|.+.. .+.+.|+
T Consensus 78 sCr~i~~~~h~DiieIdaas~----ig--Vd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~NaLL 140 (605)
T PRK05896 78 VCESINTNQSVDIVELDAASN----NG--VDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNALL 140 (605)
T ss_pred HHHHHHcCCCCceEEeccccc----cC--HHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHHHH
Confidence 112333433221 11 1224444432 2347999999999976 3458899
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..|++ +.+++|++++. ...+ .+++++|+ ..++|++++.+++...++..+.+.. ..++.+++
T Consensus 141 KtLEEPp~~tvfIL~Tt~--~~KL---l~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~keg-----------i~Is~eal 203 (605)
T PRK05896 141 KTLEEPPKHVVFIFATTE--FQKI---PLTIISRC-QRYNFKKLNNSELQELLKSIAKKEK-----------IKIEDNAI 203 (605)
T ss_pred HHHHhCCCcEEEEEECCC--hHhh---hHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99986 45566655432 2333 67889998 7999999999999999999887643 34677888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++... .|+.|.+.+.++.+...
T Consensus 204 ~~La~lS-------~GdlR~AlnlLekL~~y 227 (605)
T PRK05896 204 DKIADLA-------DGSLRDGLSILDQLSTF 227 (605)
T ss_pred HHHHHHc-------CCcHHHHHHHHHHHHhh
Confidence 8877765 56778888888875443
No 196
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.63 E-value=1.9e-14 Score=141.90 Aligned_cols=189 Identities=17% Similarity=0.231 Sum_probs=129.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++++|++.+++.+.+.+.. ...+..+||+||||+|||++|+++++.+.......
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~---------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKN---------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 5788999999999988876421 12345689999999999999999999886421100
Q ss_pred ---------CCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 275 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 275 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
...++.+++... .....++++++.+ ...||+|||+|.+.. ...+.|+
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~Ll 138 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAASN------NGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNALL 138 (355)
T ss_pred HHHHHhcCCCCCEEEeecccc------CCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHHHH
Confidence 112334433210 1122345555433 236999999999865 4458889
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..+++ ..+++|++++. ...+ .+++++|+ ..++|++|+.+++.++++.++++.. ..++++++
T Consensus 139 ~~le~~~~~~~lIl~~~~--~~~l---~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g-----------~~i~~~a~ 201 (355)
T TIGR02397 139 KTLEEPPEHVVFILATTE--PHKI---PATILSRC-QRFDFKRIPLEDIVERLKKILDKEG-----------IKIEDEAL 201 (355)
T ss_pred HHHhCCccceeEEEEeCC--HHHH---HHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99876 45555555432 2233 56788898 7899999999999999999888653 24577888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++... .++.+.+.+.++.+...
T Consensus 202 ~~l~~~~-------~g~~~~a~~~lekl~~~ 225 (355)
T TIGR02397 202 ELIARAA-------DGSLRDALSLLDQLISF 225 (355)
T ss_pred HHHHHHc-------CCChHHHHHHHHHHHhh
Confidence 8888754 46677777777776553
No 197
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.62 E-value=5.3e-15 Score=157.28 Aligned_cols=207 Identities=19% Similarity=0.235 Sum_probs=148.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..+++++|.+...+.+.+.+..+ +....+|+++|++|||||++|++|+.... ....+|+.++
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~--------------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~----r~~~~~v~i~ 434 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV--------------AQSDSTVLILGETGTGKELIARAIHNLSG----RNNRRMVKMN 434 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCcCHHHHHHHHHHhcC----CCCCCeEEEe
Confidence 45668999988887777665443 24567899999999999999999998543 3456999999
Q ss_pred cccccc-----cccccch-------hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC------
Q 011578 283 RTDLVG-----EFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------ 344 (482)
Q Consensus 283 ~~~~~~-----~~~g~~~-------~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~------ 344 (482)
|..+.. .++|+.. ......|+.+.+|+||||||+.+....| ..|+..++++
T Consensus 435 c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q-----------~~L~~~l~~~~~~~~g 503 (686)
T PRK15429 435 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQ-----------PKLLRVLQEQEFERLG 503 (686)
T ss_pred cccCChhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHH-----------HHHHHHHHhCCEEeCC
Confidence 876532 3455321 1223467888999999999999988555 7777777653
Q ss_pred -------cEEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCccc
Q 011578 345 -------KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCS 412 (482)
Q Consensus 345 -------~~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~ 412 (482)
.+.+|++++.+....... -.+.+..|+ ...|.+|++.. +++..+++.++.+...+ ++..+ ..++
T Consensus 504 ~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~---~~~~~-~~~s 579 (686)
T PRK15429 504 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARR---MGRNI-DSIP 579 (686)
T ss_pred CCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHH---cCCCC-CCcC
Confidence 357777776654332211 023344465 44678888874 88999999998876531 12222 3689
Q ss_pred HHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 413 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 413 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
++++..+..+.| +||.+++++++++|+...
T Consensus 580 ~~al~~L~~y~W------PGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 580 AETLRTLSNMEW------PGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHHHHHhCCC------CCcHHHHHHHHHHHHHhC
Confidence 999999999999 999999999999998754
No 198
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=6.3e-15 Score=146.25 Aligned_cols=189 Identities=16% Similarity=0.232 Sum_probs=128.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++++|++.+++.|+..+.. ...+..+||+||||+|||++|+++|+.+.......
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~---------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRM---------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHh---------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 4788999999999988876421 12344599999999999999999999997532100
Q ss_pred CC-----------------CeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhH
Q 011578 275 TD-----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYG 330 (482)
Q Consensus 275 ~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~ 330 (482)
.. .++.+++... .....++++.+.. ...|+||||+|.+..
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~---------- 141 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI---------- 141 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH----------
Confidence 01 1222222110 0123344443332 447999999999976
Q ss_pred HHHHHHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhcccccccccccccc
Q 011578 331 IEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLH 408 (482)
Q Consensus 331 ~~~~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~ 408 (482)
...+.|+..+++ ...++|++++. ...+ .+++.+|+ ..++|++++.+++...++..+++..
T Consensus 142 -~~~~~LLk~LEep~~~t~~Il~t~~--~~kl---~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g----------- 203 (397)
T PRK14955 142 -AAFNAFLKTLEEPPPHAIFIFATTE--LHKI---PATIASRC-QRFNFKRIPLEEIQQQLQGICEAEG----------- 203 (397)
T ss_pred -HHHHHHHHHHhcCCCCeEEEEEeCC--hHHh---HHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcC-----------
Confidence 344788888887 34555555432 2333 56788888 6899999999999999998887542
Q ss_pred CcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 409 SSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++.+++..++... .|+.+.+.+.++.+...
T Consensus 204 ~~i~~~al~~l~~~s-------~g~lr~a~~~L~kl~~~ 235 (397)
T PRK14955 204 ISVDADALQLIGRKA-------QGSMRDAQSILDQVIAF 235 (397)
T ss_pred CCCCHHHHHHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 357888898888765 56777777777766543
No 199
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.62 E-value=3.5e-14 Score=140.61 Aligned_cols=229 Identities=20% Similarity=0.168 Sum_probs=142.0
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC--CCCCeEEeec
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--PTDRVTEVQR 283 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~--~~~~~~~~~~ 283 (482)
++++|.+...+.|..++.... ....+..++++||||||||++++.+++.+...... ....++.+++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~------------~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPIL------------RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHH------------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 357899988888887754331 12355689999999999999999999987532110 1135666776
Q ss_pred ccccc----------ccc--cc-------c-hhhHHHHHHh----cCCcEEEEecccccccCCCCCCChhHHHHHHHHHh
Q 011578 284 TDLVG----------EFV--GH-------T-GPKTRRRIKE----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 339 (482)
Q Consensus 284 ~~~~~----------~~~--g~-------~-~~~~~~~~~~----a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~ 339 (482)
....+ .+. |. + ......+++. .+..||+|||+|.+....+ .++..|+.
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~--------~~L~~l~~ 154 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDD--------DLLYQLSR 154 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCc--------HHHHhHhc
Confidence 54321 111 11 1 1112233322 2347999999999984322 45566665
Q ss_pred hh-----cCCcEEEEEecCchhHHHHHhcCccccCCC-cceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccH
Q 011578 340 VM-----DGGKVVVIFAGYSEPMKRVIASNEGFCRRV-TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSM 413 (482)
Q Consensus 340 ~l-----~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~-~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 413 (482)
.. ....+.+|++++...+.. ..++.+.+|| +..+.|++|+.+++.+|++..++... . ...+++
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~~--~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~--------~-~~~~~~ 223 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFRE--NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAF--------Y-DGVLDD 223 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchHh--hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhc--------c-CCCCCh
Confidence 52 225566666654332211 2377888888 47899999999999999999886311 0 123555
Q ss_pred HHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 414 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
+++..++.... ...|+.|.+.+++..|...+..+ ....|+.+|+..|+..+.
T Consensus 224 ~~l~~i~~~~~----~~~Gd~R~al~~l~~a~~~a~~~---------~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 224 GVIPLCAALAA----QEHGDARKAIDLLRVAGEIAERE---------GAERVTEDHVEKAQEKIE 275 (365)
T ss_pred hHHHHHHHHHH----HhcCCHHHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHHH
Confidence 65554444221 11477778888888887655221 224689999998887764
No 200
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.5e-14 Score=130.77 Aligned_cols=160 Identities=18% Similarity=0.262 Sum_probs=104.8
Q ss_pred cEEEEecccccccCCCCCCChhHH-HHHHHHHhhhcCC------------cEEEEEecC---chhHHHHHhcCccccCCC
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGI-EALEEIMSVMDGG------------KVVVIFAGY---SEPMKRVIASNEGFCRRV 371 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~-~~~~~ll~~l~~~------------~~~vi~~~~---~~~~~~~~~~~~~l~~R~ 371 (482)
||+||||||+++.+.+.++.+.++ .+..-||..+++. .+.+|+++- ..|.+ .-|.|.+||
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSD----LiPELQGRf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSD----LIPELQGRF 327 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhh----cChhhcCCC
Confidence 999999999999876644435444 6678899999872 346666552 22222 269999999
Q ss_pred cceeeCCCCCHHHHHHHHH----HHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc-ccCcchhHHHHHHHHH
Q 011578 372 TKFFHFNDFNSEELAKILH----IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR-EMNGGLVDPMLVNARE 446 (482)
Q Consensus 372 ~~~i~~~~~~~~~~~~il~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~~~~~a~~ 446 (482)
+.++++..++.++..+||. ..+++......+. .+...++++++.+++.-.|...... ...+|.|..++++...
T Consensus 328 PIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE--~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLe 405 (444)
T COG1220 328 PIRVELDALTKEDFERILTEPKASLIKQYKALLKTE--GVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLE 405 (444)
T ss_pred ceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhc--CeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH
Confidence 9999999999999999984 2222222111122 3456789999999999887443322 2345777777777655
Q ss_pred HhhhhhcCCCCCh-hhhhcccHHHHHHHHHHH
Q 011578 447 NLDLRLSFDCLDT-DELRTITLEDLEAGLKLL 477 (482)
Q Consensus 447 ~~~~r~~~~~~~~-~~~~~i~~~d~~~al~~~ 477 (482)
. ++++.++. .....|+.+=+.+-|..+
T Consensus 406 d----iSFeA~d~~g~~v~Id~~yV~~~l~~l 433 (444)
T COG1220 406 D----ISFEAPDMSGQKVTIDAEYVEEKLGDL 433 (444)
T ss_pred H----hCccCCcCCCCeEEEcHHHHHHHHHHH
Confidence 4 44444332 234466666666666544
No 201
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.62 E-value=5.4e-15 Score=146.77 Aligned_cols=196 Identities=19% Similarity=0.231 Sum_probs=146.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
+.|++++|++.+.+.|...+..- .-....+|+||-|||||++||.+|+.+++.......|+..+.
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~---------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENG---------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhC---------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 57899999999999999864322 234569999999999999999999999865433333443332
Q ss_pred ccc-c-cccc---------cccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-
Q 011578 283 RTD-L-VGEF---------VGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG- 343 (482)
Q Consensus 283 ~~~-~-~~~~---------~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~- 343 (482)
... + .+.+ --.+-..+|++.++. +..|.+|||+|+|.. .+.|.||.-+++
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-----------~afNALLKTLEEP 146 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-----------QAFNALLKTLEEP 146 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-----------HHHHHHhcccccC
Confidence 210 0 0000 011334567776654 348999999999987 566999999998
Q ss_pred -CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHH
Q 011578 344 -GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 422 (482)
Q Consensus 344 -~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (482)
..|++|+|||...- + .+.+++|+ .++.|...+.+++...+..++.++. ..++++++..+++.
T Consensus 147 P~hV~FIlATTe~~K--i---p~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~-----------I~~e~~aL~~ia~~ 209 (515)
T COG2812 147 PSHVKFILATTEPQK--I---PNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEG-----------INIEEDALSLIARA 209 (515)
T ss_pred ccCeEEEEecCCcCc--C---chhhhhcc-ccccccCCCHHHHHHHHHHHHHhcC-----------CccCHHHHHHHHHH
Confidence 56777777664332 2 78889999 9999999999999999999998864 46688999999886
Q ss_pred HhhHhhccccCcchhHHHHHHHHHHh
Q 011578 423 ETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 423 ~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
. .|..|+..++++.+....
T Consensus 210 a-------~Gs~RDalslLDq~i~~~ 228 (515)
T COG2812 210 A-------EGSLRDALSLLDQAIAFG 228 (515)
T ss_pred c-------CCChhhHHHHHHHHHHcc
Confidence 5 567799999999998764
No 202
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.62 E-value=7.1e-14 Score=139.87 Aligned_cols=229 Identities=15% Similarity=0.126 Sum_probs=144.1
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
+.++|.+...++|...+.... ....+.+++++||||||||++++.+++.+...+ ....++.+++..
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~------------~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~--~~~~~v~in~~~ 95 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPAL------------RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA--VKVVYVYINCQI 95 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHh------------CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEECCc
Confidence 346777777777776643321 123556799999999999999999999886433 223567777653
Q ss_pred ccc----------cccc-------cchhhH-HHH---HHh-cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC
Q 011578 286 LVG----------EFVG-------HTGPKT-RRR---IKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG 343 (482)
Q Consensus 286 ~~~----------~~~g-------~~~~~~-~~~---~~~-a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~ 343 (482)
..+ ++.+ .+...+ ..+ +.. ....||+|||+|.+..... ...+..|+..++.
T Consensus 96 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~ 168 (394)
T PRK00411 96 DRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEE 168 (394)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhc
Confidence 221 1112 111112 122 221 1237999999999982211 1456666666543
Q ss_pred ---CcEEEEEecCchhHHHHHhcCccccCCC-cceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHH
Q 011578 344 ---GKVVVIFAGYSEPMKRVIASNEGFCRRV-TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL 419 (482)
Q Consensus 344 ---~~~~vi~~~~~~~~~~~~~~~~~l~~R~-~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (482)
.++.+|++++....... .+|.+.+|| ...|.|++|+.+++.+|++..++.. +. ...++++++..+
T Consensus 169 ~~~~~v~vI~i~~~~~~~~~--l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~--------~~-~~~~~~~~l~~i 237 (394)
T PRK00411 169 YPGARIGVIGISSDLTFLYI--LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG--------FY-PGVVDDEVLDLI 237 (394)
T ss_pred cCCCeEEEEEEECCcchhhh--cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh--------cc-cCCCCHhHHHHH
Confidence 36667776554433332 267777777 5689999999999999999887532 11 124577777776
Q ss_pred HHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 420 IEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 420 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
++... ...|+.|.+.+++..|...+..+ ....|+.+|+..|++++.+
T Consensus 238 ~~~~~----~~~Gd~r~a~~ll~~a~~~a~~~---------~~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 238 ADLTA----REHGDARVAIDLLRRAGLIAERE---------GSRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HHHHH----HhcCcHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHHHH
Confidence 66542 12466677777777776654221 2357999999999988743
No 203
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=1.6e-14 Score=147.86 Aligned_cols=188 Identities=17% Similarity=0.197 Sum_probs=132.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC-------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 275 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~------- 275 (482)
..|++++|++.+++.+...+.. ...+..+||+||||+|||++|+++|+.+........
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~---------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIES---------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 5788999999999998877431 123445899999999999999999999875311111
Q ss_pred ----------CCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 276 ----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 276 ----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
..++++++..- .....++++.+. ++..|++|||+|.+.. .+.+.|+
T Consensus 78 ~C~~i~~~~~~dv~~idgas~------~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~a~naLL 140 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASN------TSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------SAFNALL 140 (563)
T ss_pred HHHHHHcCCCCCeEEecCccc------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------HHHHHHH
Confidence 12222322110 011234444422 3458999999999976 4568999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..+++ ..+++|++++. ...+ .+++++|+ ..++|.+++.+++...++..+.+.. ..++++++
T Consensus 141 K~LEepp~~~vfI~~tte--~~kL---~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~eg-----------i~id~eAl 203 (563)
T PRK06647 141 KTIEEPPPYIVFIFATTE--VHKL---PATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQ-----------IKYEDEAL 203 (563)
T ss_pred HhhccCCCCEEEEEecCC--hHHh---HHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99997 56677776543 2333 67889999 6899999999999999998877642 34678899
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
..++... .|+.|.+.+.++++..
T Consensus 204 ~lLa~~s-------~GdlR~alslLdklis 226 (563)
T PRK06647 204 KWIAYKS-------TGSVRDAYTLFDQVVS 226 (563)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHh
Confidence 9888865 5778888888887654
No 204
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=2.8e-14 Score=143.85 Aligned_cols=189 Identities=20% Similarity=0.243 Sum_probs=128.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC-------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 275 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~------- 275 (482)
..|++++|++.+.+.+...+..- ..+..+||+||||+|||++|+.+|+.+........
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~---------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQ---------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcC---------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 46889999999999888764211 12334789999999999999999998864211110
Q ss_pred ----------CCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 276 ----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 276 ----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
..+++++++.- .| ...++.+.+. +...|++|||+|.+.. .+.+.|+
T Consensus 78 nc~~i~~g~~~d~~eidaas~----~g--vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naLL 140 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASN----RG--IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNALL 140 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccC----CC--HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHHH
Confidence 12233322110 11 1223333322 2347999999999875 4458899
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
..++. ..+++|++++. ...+ .+++.+|+ ..+.|++++.+++...++..+++.. ..++.+++
T Consensus 141 k~LEepp~~~v~Il~tt~--~~kl---~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~eg-----------i~id~~al 203 (486)
T PRK14953 141 KTLEEPPPRTIFILCTTE--YDKI---PPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEK-----------IEYEEKAL 203 (486)
T ss_pred HHHhcCCCCeEEEEEECC--HHHH---HHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 88887 34555555432 2223 56788898 6899999999999999999888653 35677888
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++... .|+.|.+.+.++.+...
T Consensus 204 ~~La~~s-------~G~lr~al~~Ldkl~~~ 227 (486)
T PRK14953 204 DLLAQAS-------EGGMRDAASLLDQASTY 227 (486)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 8888764 57788888888887644
No 205
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.61 E-value=7.1e-15 Score=142.85 Aligned_cols=188 Identities=26% Similarity=0.323 Sum_probs=123.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.+..++. ....++++|+||||||||++++++++.+...+. ...+++++
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~----------------~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~--~~~~i~~~ 75 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVK----------------EKNMPHLLFAGPPGTGKTTAALALARELYGEDW--RENFLELN 75 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHh----------------CCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc--ccceEEec
Confidence 568889999999998887742 123346999999999999999999998854321 23456665
Q ss_pred cccccccccccchhhHHHHHHh-----cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEEEecCc
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKE-----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYS 354 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~-----a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi~~~~~ 354 (482)
+++..+.. .....+.+.... +...||+|||+|.+.... .+.|+..++. ...+|+.+++.
T Consensus 76 ~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~-----------~~~L~~~le~~~~~~~lIl~~~~~ 142 (319)
T PRK00440 76 ASDERGID--VIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDA-----------QQALRRTMEMYSQNTRFILSCNYS 142 (319)
T ss_pred cccccchH--HHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHH-----------HHHHHHHHhcCCCCCeEEEEeCCc
Confidence 44321100 000111111111 234699999999996532 2455555553 33444444333
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
..+ .+++.+|+ ..++|++++.+++..+++.++++.. ..++++++..++... .++.
T Consensus 143 ~~l------~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~-----------~~i~~~al~~l~~~~-------~gd~ 197 (319)
T PRK00440 143 SKI------IDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEG-----------IEITDDALEAIYYVS-------EGDM 197 (319)
T ss_pred ccc------chhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc-------CCCH
Confidence 222 45677888 5799999999999999999888653 356888999998764 5777
Q ss_pred chhHHHHHHHHH
Q 011578 435 GLVDPMLVNARE 446 (482)
Q Consensus 435 ~~l~~~~~~a~~ 446 (482)
|.+.+.++.+..
T Consensus 198 r~~~~~l~~~~~ 209 (319)
T PRK00440 198 RKAINALQAAAA 209 (319)
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 206
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=2e-14 Score=142.06 Aligned_cols=188 Identities=17% Similarity=0.235 Sum_probs=128.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC-----CCC
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-----TDR 277 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-----~~~ 277 (482)
..|++++|++.+++.+...+.. ...+.+++||||||+|||++|+++++.+...+... ...
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~---------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIEN---------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 5788999999999888876421 12456799999999999999999999887533211 111
Q ss_pred eEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEE
Q 011578 278 VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVV 348 (482)
Q Consensus 278 ~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~v 348 (482)
+++++... ......++++++.+ ...||||||+|.+.. ..++.|+..+++ ...++
T Consensus 79 ~~~l~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~~~~~~~~ 141 (367)
T PRK14970 79 IFELDAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEEPPAHAIF 141 (367)
T ss_pred eEEecccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhCCCCceEE
Confidence 22222111 11223455555532 337999999998865 345788887876 33444
Q ss_pred EEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhh
Q 011578 349 IFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 428 (482)
Q Consensus 349 i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 428 (482)
|++++.. ..+ .|++.+|+ ..++|++|+.+++..++...+++.. ..++.+++..++...
T Consensus 142 Il~~~~~--~kl---~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g-----------~~i~~~al~~l~~~~----- 199 (367)
T PRK14970 142 ILATTEK--HKI---IPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEG-----------IKFEDDALHIIAQKA----- 199 (367)
T ss_pred EEEeCCc--ccC---CHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHhC-----
Confidence 4443322 122 67888898 6899999999999999998887643 356788999888864
Q ss_pred ccccCcchhHHHHHHHHH
Q 011578 429 RREMNGGLVDPMLVNARE 446 (482)
Q Consensus 429 ~~~~~~~~l~~~~~~a~~ 446 (482)
.++.|.+.+.++....
T Consensus 200 --~gdlr~~~~~lekl~~ 215 (367)
T PRK14970 200 --DGALRDALSIFDRVVT 215 (367)
T ss_pred --CCCHHHHHHHHHHHHH
Confidence 5677788888777654
No 207
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.3e-14 Score=143.64 Aligned_cols=188 Identities=18% Similarity=0.214 Sum_probs=129.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++++|++.+++.+...+.. ...+..+||+||||+|||++|+++|+.+.......
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~---------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF---------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 5789999999999988876421 12345689999999999999999999886421100
Q ss_pred ----------CCCeEEeecccccccccccchhhHHHHHH-------hcCCcEEEEecccccccCCCCCCChhHHHHHHHH
Q 011578 275 ----------TDRVTEVQRTDLVGEFVGHTGPKTRRRIK-------EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEI 337 (482)
Q Consensus 275 ----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~l 337 (482)
...++++++... .| -..++++.+ .+...|++|||+|.+.. .+.+.|
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~----~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n~L 141 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASH----RG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFNSL 141 (451)
T ss_pred HHHHHHhcCCCCceEEeecccc----CC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHHHH
Confidence 112333433211 11 112222221 23568999999999975 445889
Q ss_pred HhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHH
Q 011578 338 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 415 (482)
Q Consensus 338 l~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 415 (482)
+..|++ +.+++|++++.. ..+ .+++++|+ ..++|++++.+++...++..+++.. ..++.++
T Consensus 142 Lk~lEep~~~~~~Il~t~~~--~kl---~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg-----------~~i~~~a 204 (451)
T PRK06305 142 LKTLEEPPQHVKFFLATTEI--HKI---PGTILSRC-QKMHLKRIPEETIIDKLALIAKQEG-----------IETSREA 204 (451)
T ss_pred HHHhhcCCCCceEEEEeCCh--Hhc---chHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence 999987 455666654322 333 67889999 7899999999999999998877643 3467888
Q ss_pred HHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 416 IAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
+..++... .|+.|.+.+.++....
T Consensus 205 l~~L~~~s-------~gdlr~a~~~Lekl~~ 228 (451)
T PRK06305 205 LLPIARAA-------QGSLRDAESLYDYVVG 228 (451)
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHH
Confidence 88888765 4666777777776543
No 208
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.60 E-value=2e-14 Score=132.31 Aligned_cols=180 Identities=15% Similarity=0.173 Sum_probs=121.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHH-hcCCcEEEEeccccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-EAEGGILFVDEAYRLIP 320 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~a~~~vl~iDE~d~l~~ 320 (482)
...+++|+||||||||++|+++++.+...+ ..++.+++..+... +. .....+|+|||+|.+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~----~~~~~i~~~~~~~~------------~~~~~~~~~liiDdi~~l~~ 104 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGG----RNARYLDAASPLLA------------FDFDPEAELYAVDDVERLDD 104 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCC----CcEEEEehHHhHHH------------HhhcccCCEEEEeChhhcCc
Confidence 456899999999999999999999875433 25666666554211 11 12458999999998865
Q ss_pred CCCCCCChhHHHHHHHHHhhhc-CCcEEEEEecCchhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 321 MQKADDKDYGIEALEEIMSVMD-GGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~l~-~~~~~vi~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
..+ ..+-.++..+. .+..+++++++..+... ...+.+.+|| ...+++++|+.+++..+++.+..+..
T Consensus 105 ~~~--------~~L~~~~~~~~~~~~~~vl~~~~~~~~~~--~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~ 174 (227)
T PRK08903 105 AQQ--------IALFNLFNRVRAHGQGALLVAGPAAPLAL--PLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG 174 (227)
T ss_pred hHH--------HHHHHHHHHHHHcCCcEEEEeCCCCHHhC--CCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 333 23333333333 35544555554443221 1246677788 57999999999988888887665432
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 398 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
..++++++..+.+ .| ++|.++++++++.....+ ......||...+++.+.
T Consensus 175 -----------v~l~~~al~~L~~-~~------~gn~~~l~~~l~~l~~~~----------~~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 175 -----------LQLADEVPDYLLT-HF------RRDMPSLMALLDALDRYS----------LEQKRPVTLPLLREMLA 224 (227)
T ss_pred -----------CCCCHHHHHHHHH-hc------cCCHHHHHHHHHHHHHHH----------HHhCCCCCHHHHHHHHh
Confidence 5678899999999 56 899999999999854322 11224688888888775
No 209
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=6.5e-14 Score=144.93 Aligned_cols=186 Identities=21% Similarity=0.284 Sum_probs=129.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++++|++.+++.|..++..- ....++||+||||+|||++|+++|+.+.......
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~---------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISN---------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcC---------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 57889999999999988874321 1345799999999999999999999987532110
Q ss_pred -----------CCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHH
Q 011578 275 -----------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEE 336 (482)
Q Consensus 275 -----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ 336 (482)
...+++++.. .+.....++++++.+ +..|+||||+|.|.. .+.+.
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a~na 140 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AAFNA 140 (620)
T ss_pred cHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HHHHH
Confidence 0012233221 112234566666543 347999999999976 45599
Q ss_pred HHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHH
Q 011578 337 IMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD 414 (482)
Q Consensus 337 ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 414 (482)
|+..|++ ..+++|++++. + ..+ .|++++|+ ..++|+.++.++....+...+.+.. ..++.+
T Consensus 141 LLK~LEePp~~tvfIL~t~~-~-~~l---lpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~keg-----------i~is~~ 203 (620)
T PRK14948 141 LLKTLEEPPPRVVFVLATTD-P-QRV---LPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKES-----------IEIEPE 203 (620)
T ss_pred HHHHHhcCCcCeEEEEEeCC-h-hhh---hHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhC-----------CCCCHH
Confidence 9999997 55666665542 2 223 57889999 8899999999999988888776543 345777
Q ss_pred HHHHHHHHHhhHhhccccCcchhHHHHHHH
Q 011578 415 AIAALIEKETTEKQRREMNGGLVDPMLVNA 444 (482)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a 444 (482)
++..++... .|+.|.+.+.++..
T Consensus 204 al~~La~~s-------~G~lr~A~~lLekl 226 (620)
T PRK14948 204 ALTLVAQRS-------QGGLRDAESLLDQL 226 (620)
T ss_pred HHHHHHHHc-------CCCHHHHHHHHHHH
Confidence 887777764 45666777776653
No 210
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4.6e-14 Score=145.18 Aligned_cols=189 Identities=15% Similarity=0.232 Sum_probs=129.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC--------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 274 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-------- 274 (482)
..|++++|++.+++.|+..+.. ..-+..+||+||||||||++|+++|+.+.......
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~---------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRM---------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 4789999999999998876321 12344599999999999999999999997522110
Q ss_pred -----------------CCCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhH
Q 011578 275 -----------------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYG 330 (482)
Q Consensus 275 -----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~ 330 (482)
...++.+++... . ....++++.+. +...|++|||+|.+..
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~----~--~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~---------- 141 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASN----N--SVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST---------- 141 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEeccccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH----------
Confidence 011222221110 0 12234444332 2457999999999976
Q ss_pred HHHHHHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhcccccccccccccc
Q 011578 331 IEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLH 408 (482)
Q Consensus 331 ~~~~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~ 408 (482)
...+.|+..|++ +..++|++++. ...+ .+++.+|+ ..++|.+++.+++...++..+++..
T Consensus 142 -~a~naLLK~LEePp~~tv~IL~t~~--~~kL---l~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~eg----------- 203 (620)
T PRK14954 142 -AAFNAFLKTLEEPPPHAIFIFATTE--LHKI---PATIASRC-QRFNFKRIPLDEIQSQLQMICRAEG----------- 203 (620)
T ss_pred -HHHHHHHHHHhCCCCCeEEEEEeCC--hhhh---hHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcC-----------
Confidence 345899999987 45555555432 2333 56788898 8999999999999999988887643
Q ss_pred CcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 409 SSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++.+++..++... .|+.+.+.+.++.....
T Consensus 204 i~I~~eal~~La~~s-------~Gdlr~al~eLeKL~~y 235 (620)
T PRK14954 204 IQIDADALQLIARKA-------QGSMRDAQSILDQVIAF 235 (620)
T ss_pred CCCCHHHHHHHHHHh-------CCCHHHHHHHHHHHHHh
Confidence 356888888888765 56677777777765443
No 211
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.58 E-value=4.3e-16 Score=136.24 Aligned_cols=114 Identities=30% Similarity=0.441 Sum_probs=73.1
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcC------------
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG------------ 271 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~------------ 271 (482)
+|.+|+|++..|+.+.-.. ....++|++||||||||++|+++...+....
T Consensus 1 Df~dI~GQe~aKrAL~iAA------------------aG~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s 62 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAA------------------AGGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYS 62 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHH------------------HCC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-T
T ss_pred ChhhhcCcHHHHHHHHHHH------------------cCCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccc
Confidence 3678999999999988542 1357999999999999999999998763211
Q ss_pred ---------CCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhc
Q 011578 272 ---------ILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 342 (482)
Q Consensus 272 ---------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~ 342 (482)
.....||...+.+.-....+|......-..+..|.+||||+||+-.+. ..+++.|++.|+
T Consensus 63 ~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~-----------~~vld~Lr~ple 131 (206)
T PF01078_consen 63 VAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFD-----------RSVLDALRQPLE 131 (206)
T ss_dssp T---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS------------HHHHHHHHHHHH
T ss_pred cccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcC-----------HHHHHHHHHHHH
Confidence 111233444443333333445433323345688999999999996554 489999999998
Q ss_pred CCcE
Q 011578 343 GGKV 346 (482)
Q Consensus 343 ~~~~ 346 (482)
++.+
T Consensus 132 ~g~v 135 (206)
T PF01078_consen 132 DGEV 135 (206)
T ss_dssp HSBE
T ss_pred CCeE
Confidence 8644
No 212
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.58 E-value=8.1e-15 Score=140.00 Aligned_cols=160 Identities=21% Similarity=0.282 Sum_probs=104.6
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC----------
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---------- 273 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~---------- 273 (482)
.|.+++|++.+++.+.-.. + .....|+||.||||||||++||++++.+......
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~--~--------------~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTA--I--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CHHHhCCHHHHHHHHHHHH--h--------------ccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 4788999999988777431 1 0123689999999999999999999988310000
Q ss_pred ----------------CCCCeEEeeccccccccccc--------chhh--HHHHHHhcCCcEEEEecccccccCCCCCCC
Q 011578 274 ----------------PTDRVTEVQRTDLVGEFVGH--------TGPK--TRRRIKEAEGGILFVDEAYRLIPMQKADDK 327 (482)
Q Consensus 274 ----------------~~~~~~~~~~~~~~~~~~g~--------~~~~--~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~ 327 (482)
...+|+.+..+.-....+|. ++.. ....+.++.+++|||||++.+.++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~------ 143 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH------ 143 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH------
Confidence 00223323222222224442 1111 123455677899999999999874
Q ss_pred hhHHHHHHHHHhhhcCCc---------------EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCH-HHHHHHHHH
Q 011578 328 DYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHI 391 (482)
Q Consensus 328 ~~~~~~~~~ll~~l~~~~---------------~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~-~~~~~il~~ 391 (482)
+++.|++.|+++. ++++++.++.. .. ..+++.+||...+.+++|.. +++.+|++.
T Consensus 144 -----~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e-~~---l~~aLldRF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 144 -----IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEE-GE---LRPQLLDRFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred -----HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCccc-CC---CCHHHHhhcceEEEcCCCCcHHHHHHHHHH
Confidence 4488888887654 34444433321 11 26789999999999998887 899999987
Q ss_pred HHh
Q 011578 392 KMN 394 (482)
Q Consensus 392 ~l~ 394 (482)
...
T Consensus 215 ~~~ 217 (334)
T PRK13407 215 RDA 217 (334)
T ss_pred hhc
Confidence 543
No 213
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=7.1e-15 Score=143.98 Aligned_cols=159 Identities=20% Similarity=0.227 Sum_probs=106.4
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC----------
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---------- 273 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~---------- 273 (482)
.|++|+|++.+++.|+..+..-.. .....+...+..+||+||||+|||++|+++|+.+......
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~------~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C 76 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA------DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRAC 76 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc------cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHH
Confidence 588999999999999987542210 0011122245679999999999999999999988643210
Q ss_pred -----CCCC-eEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhh
Q 011578 274 -----PTDR-VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV 340 (482)
Q Consensus 274 -----~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~ 340 (482)
.+.| +..+.+. +..+ ....++++++.+ +..|+||||+|.+.+. ..|.|+..
T Consensus 77 ~~~~~~~hpD~~~i~~~---~~~i--~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-----------aanaLLk~ 140 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPE---GLSI--GVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-----------AANALLKA 140 (394)
T ss_pred HHHhcCCCCCEEEeccc---cccC--CHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----------HHHHHHHH
Confidence 0011 1112111 1111 122356666543 2379999999999873 34889999
Q ss_pred hcC---CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHH
Q 011578 341 MDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI 391 (482)
Q Consensus 341 l~~---~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~ 391 (482)
|++ +.++|++|+++..+ .|++++|+ ..+.|++|+.+++.+.+..
T Consensus 141 LEep~~~~~fIL~a~~~~~l------lpTIrSRc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 141 VEEPPPRTVWLLCAPSPEDV------LPTIRSRC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred hhcCCCCCeEEEEECChHHC------hHHHHhhC-eEEECCCCCHHHHHHHHHH
Confidence 987 55666666553332 78999999 8999999999998888863
No 214
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=8.1e-15 Score=140.07 Aligned_cols=173 Identities=14% Similarity=0.243 Sum_probs=122.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|+.++-..+.|+.|.+=+..+ ..++.+....+..=-.+.|||||||||||++.-|+|+.+.. .+..++
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F---~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~y-------dIydLe 267 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDF---IKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNY-------DIYDLE 267 (457)
T ss_pred CCccccccChhHHHHHHHHHHHH---HhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCC-------ceEEee
Confidence 66778888888888877643322 23444444455444568999999999999999999998876 444444
Q ss_pred cccccccccccchhhHHHHHHhcCC-cEEEEecccccccCCC--CC----CC-hhHHHHHHHHHhhhcC------CcEEE
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAEG-GILFVDEAYRLIPMQK--AD----DK-DYGIEALEEIMSVMDG------GKVVV 348 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~-~vl~iDE~d~l~~~~~--~~----~~-~~~~~~~~~ll~~l~~------~~~~v 348 (482)
-++ ++.... ++.++..+.+ +||+|.+||.-...+. .. .. ....-.++-||..+|+ +..+|
T Consensus 268 Lt~-----v~~n~d-Lr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIi 341 (457)
T KOG0743|consen 268 LTE-----VKLDSD-LRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERII 341 (457)
T ss_pred ecc-----ccCcHH-HHHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEE
Confidence 333 222333 8888877765 9999999998754222 11 11 1233567889999986 35566
Q ss_pred EEecCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhcc
Q 011578 349 IFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQ 396 (482)
Q Consensus 349 i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~ 396 (482)
|+||+ -.+.+ ||||.| |+|..|+++..+.++...++..++.-.
T Consensus 342 vFTTN--h~EkL---DPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~ 386 (457)
T KOG0743|consen 342 VFTTN--HKEKL---DPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIE 386 (457)
T ss_pred EEecC--Chhhc---CHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCC
Confidence 66633 23334 999988 999999999999999999999998763
No 215
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.58 E-value=2.3e-14 Score=131.63 Aligned_cols=129 Identities=37% Similarity=0.497 Sum_probs=113.0
Q ss_pred cCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCC-----HHHHHHHHhCCC---Ccc
Q 011578 41 NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC-----NEAAKLLLAHGA---FIE 112 (482)
Q Consensus 41 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~-----~~~v~~Ll~~ga---~~~ 112 (482)
...+.. +.+++|+++..+...++++++. .+++++.+|..|.||||+|+..++ .+++++|++.|+ +.+
T Consensus 67 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 141 (235)
T COG0666 67 AARDLD-GRLPLHSAASKGDDKIVKLLLA----SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNN 141 (235)
T ss_pred ccCCcc-ccCHHHHHHHcCcHHHHHHHHH----cCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcc
Confidence 333443 8899999999999999999998 688899999999999999999999 999999999999 566
Q ss_pred ccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhh
Q 011578 113 AKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 179 (482)
Q Consensus 113 ~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~ 179 (482)
.+|..|+||||+|+ ..|+.+++.+|++.|++++..+..|.|++ +.+...+...+...+...+
T Consensus 142 ~~~~~g~tpl~~A~----~~~~~~~~~~ll~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 142 LRDEDGNTPLHWAA----LNGDADIVELLLEAGADPNSRNSYGVTAL-DPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred ccCCCCCchhHHHH----HcCchHHHHHHHhcCCCCcccccCCCcch-hhhcccchHHHHHHHHhcC
Confidence 67999999999999 88888999999999999999999999999 5555667777777777665
No 216
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.57 E-value=9.7e-14 Score=127.75 Aligned_cols=187 Identities=12% Similarity=0.175 Sum_probs=121.6
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 322 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~ 322 (482)
..+++|+||||||||.+++++++.+...+. .+..++...... + ...+.+.++. ..+|+|||++.+..+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~----~v~y~~~~~~~~-~----~~~~~~~~~~--~dlliiDdi~~~~~~~ 113 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGR----AVGYVPLDKRAW-F----VPEVLEGMEQ--LSLVCIDNIECIAGDE 113 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCC----eEEEEEHHHHhh-h----hHHHHHHhhh--CCEEEEeChhhhcCCH
Confidence 357999999999999999999998875321 233333322111 0 1112222222 3689999999886532
Q ss_pred CCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCCc--ceeeCCCCCHHHHHHHHHHHHhcccccc
Q 011578 323 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQTEDS 400 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~~~~ 400 (482)
+ ....+.+.+...++.++..+|++++..+.. .-...|.|++|+. .++++.+|+.+++.++++......
T Consensus 114 ~-----~~~~lf~l~n~~~e~g~~~li~ts~~~p~~-l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~---- 183 (235)
T PRK08084 114 L-----WEMAIFDLYNRILESGRTRLLITGDRPPRQ-LNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLR---- 183 (235)
T ss_pred H-----HHHHHHHHHHHHHHcCCCeEEEeCCCChHH-cCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHc----
Confidence 1 112333445555666765566666544433 2223699999994 899999999999999998866542
Q ss_pred ccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHH
Q 011578 401 LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 474 (482)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al 474 (482)
+ ..++++++..++.+. .++.|.+.++++...... +. ....||.+-+++++
T Consensus 184 ---~----~~l~~~v~~~L~~~~-------~~d~r~l~~~l~~l~~~~---l~-------~~~~it~~~~k~~l 233 (235)
T PRK08084 184 ---G----FELPEDVGRFLLKRL-------DREMRTLFMTLDQLDRAS---IT-------AQRKLTIPFVKEIL 233 (235)
T ss_pred ---C----CCCCHHHHHHHHHhh-------cCCHHHHHHHHHHHHHHH---Hh-------cCCCCCHHHHHHHH
Confidence 2 357889999999987 678899999988853221 11 11347777777665
No 217
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.9e-15 Score=144.28 Aligned_cols=154 Identities=26% Similarity=0.405 Sum_probs=103.9
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHH-------------
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLY------------- 268 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~------------- 268 (482)
..+|.|++|++..|+.+.-. +...++++|+||||||||++|+.+...+.
T Consensus 175 ~~D~~DV~GQ~~AKrAleiA------------------AAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I 236 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIA------------------AAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAI 236 (490)
T ss_pred CcchhhhcCcHHHHHHHHHH------------------HhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHH
Confidence 34789999999999998854 34678999999999999999999977551
Q ss_pred --HcC-------CCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHh
Q 011578 269 --MVG-------ILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 339 (482)
Q Consensus 269 --~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~ 339 (482)
..+ .....||..-+.+.-....+|........-+..|++|||||||+- ++.+.+++.|.+
T Consensus 237 ~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElp-----------ef~~~iLe~LR~ 305 (490)
T COG0606 237 HSLAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELP-----------EFKRSILEALRE 305 (490)
T ss_pred hhhcccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccc-----------hhhHHHHHHHhC
Confidence 001 222344554444443444555543333345577899999999984 445599999999
Q ss_pred hhcCCcEEEEEec----CchhHHHHHhcC-----------------------------ccccCCCcceeeCCCCCHHH
Q 011578 340 VMDGGKVVVIFAG----YSEPMKRVIASN-----------------------------EGFCRRVTKFFHFNDFNSEE 384 (482)
Q Consensus 340 ~l~~~~~~vi~~~----~~~~~~~~~~~~-----------------------------~~l~~R~~~~i~~~~~~~~~ 384 (482)
-|++++++|--++ ++..+..+.++| .+|++|+|..++++.++..+
T Consensus 306 PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e 383 (490)
T COG0606 306 PLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGE 383 (490)
T ss_pred ccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHH
Confidence 9999776444333 112222222222 56888999999999887433
No 218
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.57 E-value=1.3e-14 Score=125.91 Aligned_cols=173 Identities=23% Similarity=0.281 Sum_probs=122.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..+.+|+|.++..+++.-+.. ...-+++++.|||||||||-+.+||+++- |......+++++
T Consensus 24 ~~l~dIVGNe~tv~rl~via~----------------~gnmP~liisGpPG~GKTTsi~~LAr~LL--G~~~ke~vLELN 85 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAK----------------EGNMPNLIISGPPGTGKTTSILCLARELL--GDSYKEAVLELN 85 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHH----------------cCCCCceEeeCCCCCchhhHHHHHHHHHh--ChhhhhHhhhcc
Confidence 467899999999998886532 23457899999999999999999999983 434445788999
Q ss_pred cccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCch
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 355 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~ 355 (482)
+|+-.+--+ .++.-+.|.+. ++.|+++||+|++....| +++..-++...+...+..+|+..+
T Consensus 86 ASdeRGIDv---VRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQ--------QAlRRtMEiyS~ttRFalaCN~s~ 154 (333)
T KOG0991|consen 86 ASDERGIDV---VRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQ--------QALRRTMEIYSNTTRFALACNQSE 154 (333)
T ss_pred CccccccHH---HHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHH--------HHHHHHHHHHcccchhhhhhcchh
Confidence 887544322 23333556543 348999999999987655 666666666666666666676666
Q ss_pred hHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHH
Q 011578 356 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 422 (482)
Q Consensus 356 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (482)
.+. +++.+|+ ..++|..++..++..-+....+.+. ..++++.|+.+..-
T Consensus 155 KIi------EPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ek-----------v~yt~dgLeaiift 203 (333)
T KOG0991|consen 155 KII------EPIQSRC-AILRYSKLSDQQILKRLLEVAKAEK-----------VNYTDDGLEAIIFT 203 (333)
T ss_pred hhh------hhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhC-----------CCCCcchHHHhhhh
Confidence 653 4566788 7888899998887766666555432 34566777777654
No 219
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.57 E-value=2.9e-14 Score=131.04 Aligned_cols=127 Identities=30% Similarity=0.362 Sum_probs=115.0
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCc-----HHHHHHHHcCCCCCCc---cccc
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK-----AEIVKSLLEWPGNDKV---ELEA 80 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~-----~~~v~~Ll~~~~~~~~---~~~~ 80 (482)
....+.+++|.++..++...+..++. .+.+++..+.. |.||||+|+..|+ .+++++|++. ++ ..+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~~~~~~ll~~----g~~~~~~~~ 142 (235)
T COG0666 69 RDLDGRLPLHSAASKGDDKIVKLLLA-SGADVNAKDAD-GDTPLHLAALNGNPPEGNIEVAKLLLEA----GADLDVNNL 142 (235)
T ss_pred CCccccCHHHHHHHcCcHHHHHHHHH-cCCCcccccCC-CCcHHHHHHhcCCcccchHHHHHHHHHc----CCCCCCccc
Confidence 34558899999999999999987775 45666888886 9999999999999 9999999994 55 6677
Q ss_pred CcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCC
Q 011578 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN 145 (482)
Q Consensus 81 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~g 145 (482)
+|..|+||||+|+..|+.+++++|++.|++++.++..|.|++++|+ ..++.+++..++..+
T Consensus 143 ~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~----~~~~~~~~~~l~~~~ 203 (235)
T COG0666 143 RDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAA----KNGRIELVKLLLDKG 203 (235)
T ss_pred cCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhc----ccchHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999999999 899999999999876
No 220
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.56 E-value=1.1e-13 Score=138.16 Aligned_cols=174 Identities=18% Similarity=0.181 Sum_probs=116.2
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh--cCCcEEEEeccccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLIP 320 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--a~~~vl~iDE~d~l~~ 320 (482)
..+++||||||+|||.|++++++.+...+ ..++.++...+...+...-.....+.|.. ....||+|||++.+..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~----~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESG----GKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSG 216 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcC----CCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcC
Confidence 35699999999999999999999986532 35677776655443322111111122332 2347999999999865
Q ss_pred CCCCCCChhHHHHHHHHHhhhcCCcEEEEEecC-chhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 321 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY-SEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~-~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
+.. ....+...+-...+.+..+|+.++. +..+..+ ++.+.+|| ...+.+++|+.+++..|++..+....
T Consensus 217 k~~-----~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l---~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 217 KGA-----TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM---EERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred Chh-----hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh---HHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 321 1112222222223456656665544 3333333 78899999 47999999999999999999887532
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 398 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
..++++++..++... .+|.|.+.+.++..+.
T Consensus 289 -----------~~l~~evl~~la~~~-------~~dir~L~g~l~~l~~ 319 (445)
T PRK12422 289 -----------IRIEETALDFLIEAL-------SSNVKSLLHALTLLAK 319 (445)
T ss_pred -----------CCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHH
Confidence 457889999999876 5788899888887753
No 221
>PRK06893 DNA replication initiation factor; Validated
Probab=99.56 E-value=9.4e-14 Score=127.40 Aligned_cols=185 Identities=13% Similarity=0.187 Sum_probs=117.0
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcC-CcEEEEecccccccCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE-GGILFVDEAYRLIPMQ 322 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~-~~vl~iDE~d~l~~~~ 322 (482)
+.++|+||||||||.+++++|+++...+. +..++..+... ....+.++... ..+|+|||++.+....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~--~~~y~~~~~~~----------~~~~~~~~~~~~~dlLilDDi~~~~~~~ 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQR--TAIYIPLSKSQ----------YFSPAVLENLEQQDLVCLDDLQAVIGNE 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC--CeEEeeHHHhh----------hhhHHHHhhcccCCEEEEeChhhhcCCh
Confidence 45899999999999999999999865432 22333322111 11123333333 4799999999987532
Q ss_pred CCCCChhHHHHHHHHHhhh-cCCcEEEEEecCchhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhccccc
Q 011578 323 KADDKDYGIEALEEIMSVM-DGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTED 399 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l-~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~~~ 399 (482)
. ....+-.++..+ +.+..+++++++..+.. +-...|.+.+|+ +..+.+++|+.+++.+|++..+....
T Consensus 108 ~------~~~~l~~l~n~~~~~~~~illits~~~p~~-l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~-- 178 (229)
T PRK06893 108 E------WELAIFDLFNRIKEQGKTLLLISADCSPHA-LSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG-- 178 (229)
T ss_pred H------HHHHHHHHHHHHHHcCCcEEEEeCCCChHH-ccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC--
Confidence 2 122333333333 34554444443332222 111257888877 56999999999999999998876532
Q ss_pred cccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 400 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
..++++++..++++. .++.|.+.++++...... + .+...||...+++.+.
T Consensus 179 ---------l~l~~~v~~~L~~~~-------~~d~r~l~~~l~~l~~~~---~-------~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 179 ---------IELSDEVANFLLKRL-------DRDMHTLFDALDLLDKAS---L-------QAQRKLTIPFVKEILG 228 (229)
T ss_pred ---------CCCCHHHHHHHHHhc-------cCCHHHHHHHHHHHHHHH---H-------hcCCCCCHHHHHHHhc
Confidence 466889999999876 578888888888753221 1 1123588888777663
No 222
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.56 E-value=1e-14 Score=149.19 Aligned_cols=205 Identities=19% Similarity=0.230 Sum_probs=145.1
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 284 (482)
+.+++|.......+.+.+..+ ......+++.|++|||||++|++++.. ......+|+.++++
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~--------------~~~~~~vli~Ge~GtGK~~lA~~ih~~----s~~~~~~~i~i~c~ 198 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRL--------------SRSSISVLINGESGTGKELVAHALHRH----SPRAKAPFIALNMA 198 (469)
T ss_pred cccceecCHHHHHHHHHHHHH--------------hccCCeEEEEeCCCCcHHHHHHHHHhc----CCCCCCCeEeeeCC
Confidence 446777776655555543322 235567999999999999999999984 44456799999998
Q ss_pred cccc-----cccccchh-------hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-------
Q 011578 285 DLVG-----EFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK------- 345 (482)
Q Consensus 285 ~~~~-----~~~g~~~~-------~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~------- 345 (482)
.+.. ..+|+... .....|+.+.+|.|||||++.|....| ..|++.++.+.
T Consensus 199 ~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q-----------~~L~~~l~~~~~~~~~~~ 267 (469)
T PRK10923 199 AIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQ-----------TRLLRVLADGQFYRVGGY 267 (469)
T ss_pred CCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHH-----------HHHHHHHhcCcEEeCCCC
Confidence 7632 23454221 112346778889999999999998555 77888877543
Q ss_pred ------EEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccHH
Q 011578 346 ------VVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMD 414 (482)
Q Consensus 346 ------~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 414 (482)
+.+|++++.+....+.. -.+.|..|+ ...|.+|++.. +++..+++.++++.... ++.. ...++++
T Consensus 268 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~---~~~~-~~~~~~~ 343 (469)
T PRK10923 268 APVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARE---LGVE-AKLLHPE 343 (469)
T ss_pred CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHH---cCCC-CCCcCHH
Confidence 47777776654332211 125566677 57788888774 89999999999876431 1212 2468999
Q ss_pred HHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 415 AIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
++..+..+.| +||.++|+++++++....
T Consensus 344 a~~~L~~~~w------pgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 344 TEAALTRLAW------PGNVRQLENTCRWLTVMA 371 (469)
T ss_pred HHHHHHhCCC------CChHHHHHHHHHHHHHhC
Confidence 9999999999 999999999999998754
No 223
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.1e-13 Score=142.62 Aligned_cols=216 Identities=18% Similarity=0.242 Sum_probs=156.9
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc---CCCCCCCeEE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTE 280 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~---~~~~~~~~~~ 280 (482)
.++-++|.+.-++++-+.+. -....+-+|.|+||+|||.++..+|..+-.. -.+....++.
T Consensus 168 klDPvIGRd~EI~r~iqIL~----------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILS----------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred CCCCCcChHHHHHHHHHHHh----------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 35557888876666665421 1244578899999999999999999988531 1233456677
Q ss_pred eeccccc--ccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCch
Q 011578 281 VQRTDLV--GEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 355 (482)
Q Consensus 281 ~~~~~~~--~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~ 355 (482)
++-+.++ .+|-|+-+.+++.++++.. ..||||||++.+.......+ + ...+-|-|...+..|.+.+|+|||-+
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaLARGeL~~IGATT~~ 309 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPALARGELRCIGATTLD 309 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHHhcCCeEEEEeccHH
Confidence 7766654 4589999999999887543 68999999999987554322 2 45777999999999999999999999
Q ss_pred hHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcc
Q 011578 356 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 435 (482)
Q Consensus 356 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 435 (482)
.+...++.|+||.||| ..|.+..|+.++-..||+-.-.+.. .-....+++++|.+-...+.+ ....|
T Consensus 310 EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE-------~hH~V~i~D~Al~aAv~LS~R-----YI~dR 376 (786)
T COG0542 310 EYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYE-------AHHGVRITDEALVAAVTLSDR-----YIPDR 376 (786)
T ss_pred HHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHH-------HccCceecHHHHHHHHHHHHh-----hcccC
Confidence 9999999999999999 9999999999999999987544332 223345677777666554321 11222
Q ss_pred hh----HHHHHHHHHHhhh
Q 011578 436 LV----DPMLVNARENLDL 450 (482)
Q Consensus 436 ~l----~~~~~~a~~~~~~ 450 (482)
.+ -.+++.|......
T Consensus 377 ~LPDKAIDLiDeA~a~~~l 395 (786)
T COG0542 377 FLPDKAIDLLDEAGARVRL 395 (786)
T ss_pred CCCchHHHHHHHHHHHHHh
Confidence 22 3556666666543
No 224
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.56 E-value=5.5e-14 Score=134.45 Aligned_cols=160 Identities=21% Similarity=0.243 Sum_probs=107.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCe----
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV---- 278 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~---- 278 (482)
-.|.+++|++++|..|.-.. -.....++||.||+|||||++||++++.+.........+|
T Consensus 14 ~pf~~ivGq~~~k~al~~~~----------------~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p 77 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNV----------------IDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHP 77 (350)
T ss_pred CCHHHHhChHHHHHHHHHhc----------------cCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCC
Confidence 35789999999999888541 1124568999999999999999999998875443332222
Q ss_pred -----------------------------EEeecccccccccccc--hhh--------HHHHHHhcCCcEEEEecccccc
Q 011578 279 -----------------------------TEVQRTDLVGEFVGHT--GPK--------TRRRIKEAEGGILFVDEAYRLI 319 (482)
Q Consensus 279 -----------------------------~~~~~~~~~~~~~g~~--~~~--------~~~~~~~a~~~vl~iDE~d~l~ 319 (482)
+.+....-....+|.- ++. -...+.+|.++||||||++.+.
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~ 157 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 157 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence 2222221222233320 000 1234567788999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHhhhcCCc---------------EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCC-HH
Q 011578 320 PMQKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SE 383 (482)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ll~~l~~~~---------------~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~ 383 (482)
++.| +.|++.|+++. ++++++.++.. .. ..+++.+||...+.+..|+ ++
T Consensus 158 ~~~Q-----------~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~e-g~---l~~~LldRf~l~i~l~~~~~~~ 222 (350)
T CHL00081 158 DHLV-----------DILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEE-GE---LRPQLLDRFGMHAEIRTVKDPE 222 (350)
T ss_pred HHHH-----------HHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCccc-CC---CCHHHHHHhCceeecCCCCChH
Confidence 8555 77888886532 34444433332 12 2788999999999999998 69
Q ss_pred HHHHHHHHHH
Q 011578 384 ELAKILHIKM 393 (482)
Q Consensus 384 ~~~~il~~~l 393 (482)
++.+|+++..
T Consensus 223 ~e~~il~~~~ 232 (350)
T CHL00081 223 LRVKIVEQRT 232 (350)
T ss_pred HHHHHHHhhh
Confidence 9999998754
No 225
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=9.7e-14 Score=144.11 Aligned_cols=188 Identities=19% Similarity=0.247 Sum_probs=126.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC-------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 275 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~------- 275 (482)
..|++++|++.+++.|..++.. ...+..+||+||||+|||++|+++|+.+........
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~---------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAE---------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh---------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 4688999999999998876321 112345799999999999999999998864221110
Q ss_pred -----------CCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHH
Q 011578 276 -----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEI 337 (482)
Q Consensus 276 -----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~l 337 (482)
..+++++++.. . ....++++.+. +...||||||+|.|.. ..++.|
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~----~--~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~naL 140 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASH----T--SVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFNAL 140 (585)
T ss_pred HHHHHHhcCCCCeEEEEecccc----C--CHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHHHH
Confidence 11233332211 1 11233443322 3458999999999975 455889
Q ss_pred HhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHH
Q 011578 338 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 415 (482)
Q Consensus 338 l~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 415 (482)
+..|++ ...++|++++. ...+ .+.+++|+ ..+.|+.++.+++..+++..+.+.. ..++.++
T Consensus 141 Lk~LEepp~~tv~Il~t~~--~~kl---l~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~eg-----------l~i~~ea 203 (585)
T PRK14950 141 LKTLEEPPPHAIFILATTE--VHKV---PATILSRC-QRFDFHRHSVADMAAHLRKIAAAEG-----------INLEPGA 203 (585)
T ss_pred HHHHhcCCCCeEEEEEeCC--hhhh---hHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence 999987 34455554322 2223 46678888 7899999999999999988877643 3467788
Q ss_pred HHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 416 IAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
+..++... .|+.+.+.+.+++...
T Consensus 204 l~~La~~s-------~Gdlr~al~~LekL~~ 227 (585)
T PRK14950 204 LEAIARAA-------TGSMRDAENLLQQLAT 227 (585)
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHH
Confidence 88888755 5677788888776543
No 226
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.55 E-value=8.4e-14 Score=139.22 Aligned_cols=176 Identities=15% Similarity=0.195 Sum_probs=117.8
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccch----hhHHHHHHhcCCcEEEEeccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG----PKTRRRIKEAEGGILFVDEAYRL 318 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~a~~~vl~iDE~d~l 318 (482)
...++|+||||+|||.|++++++++.... ....++.+++.++...++.... ....+.+. ...+|+|||++.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~--~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l 211 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENN--PNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFL 211 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhC--CCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhh
Confidence 45689999999999999999999986531 1235677777666544433211 11222222 2469999999998
Q ss_pred ccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecC-chhHHHHHhcCccccCCCc--ceeeCCCCCHHHHHHHHHHHHhc
Q 011578 319 IPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY-SEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNN 395 (482)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~-~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~ 395 (482)
..+.. ....++..|-...+.+..+|++++. +..+..+ ++.+.+||. ..+.|++|+.++|..|++..++.
T Consensus 212 ~~~~~-----~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l---~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 212 AGKER-----TQEEFFHTFNALHENGKQIVLTSDRPPKELPGL---EERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred cCCHH-----HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhh---hhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 75321 1112333333334456655655543 2333333 788999995 47999999999999999998876
Q ss_pred cccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 396 QTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
.. ..++++.+..++... .++.|.+..++.+....+
T Consensus 284 ~~-----------~~l~~e~l~~ia~~~-------~~~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 284 EG-----------LELPDEVLEFIAKNI-------RSNVRELEGALNRLLAYA 318 (405)
T ss_pred cC-----------CCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHH
Confidence 42 456889999999865 578888888887765543
No 227
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.1e-13 Score=143.29 Aligned_cols=189 Identities=16% Similarity=0.252 Sum_probs=132.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--------- 273 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~--------- 273 (482)
..|++++|++.+++.|...+.. ...+..+||+||+|+|||++|+++|+.+......
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~---------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT---------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 5789999999999998877431 1133448999999999999999999988632111
Q ss_pred ---------CCCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHH
Q 011578 274 ---------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEI 337 (482)
Q Consensus 274 ---------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~l 337 (482)
....++.+++.+. .+...++++++++ ...|++|||+|.|.. .+.+.|
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~naL 141 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFNAF 141 (614)
T ss_pred hHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHHHH
Confidence 1123333433211 1123455555433 347999999999976 445899
Q ss_pred HhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHH
Q 011578 338 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 415 (482)
Q Consensus 338 l~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 415 (482)
+..|++ ...++|++++.. ..+ .+++++|+ ..++|.+++.+++...++..+.++. ..++.++
T Consensus 142 LK~LEepp~~tifIL~tt~~--~kI---l~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~eg-----------i~i~~~a 204 (614)
T PRK14971 142 LKTLEEPPSYAIFILATTEK--HKI---LPTILSRC-QIFDFNRIQVADIVNHLQYVASKEG-----------ITAEPEA 204 (614)
T ss_pred HHHHhCCCCCeEEEEEeCCc--hhc---hHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence 999987 445566655432 223 67889998 8899999999999999998887653 3457788
Q ss_pred HHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 416 IAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
+..++... .++.|.+.+.++.....
T Consensus 205 l~~La~~s-------~gdlr~al~~Lekl~~y 229 (614)
T PRK14971 205 LNVIAQKA-------DGGMRDALSIFDQVVSF 229 (614)
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 88888765 56777787887776543
No 228
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.55 E-value=1.2e-13 Score=139.19 Aligned_cols=153 Identities=22% Similarity=0.262 Sum_probs=106.0
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc-------------
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV------------- 270 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~------------- 270 (482)
.|+++.|+..+++.+.-. .....+++|.||||||||++|+.++..+...
T Consensus 190 d~~dv~Gq~~~~~al~~a------------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s 251 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIA------------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWS 251 (499)
T ss_pred CHHHhcCcHHHHhhhhhh------------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEecccccc
Confidence 688999999887766532 2355789999999999999999999754210
Q ss_pred --------CCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhc
Q 011578 271 --------GILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 342 (482)
Q Consensus 271 --------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~ 342 (482)
+.....||...+.+......+|.........+..|.+|||||||++.+.+ .++..|++.|+
T Consensus 252 ~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~-----------~~~~~L~~~LE 320 (499)
T TIGR00368 252 LVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKR-----------SVLDALREPIE 320 (499)
T ss_pred chhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCH-----------HHHHHHHHHHH
Confidence 01223466655555444444554322334567889999999999998876 55588888887
Q ss_pred CCc---------------EEEEEecCchh---H---------------HHHHhcCccccCCCcceeeCCCCCHHHH
Q 011578 343 GGK---------------VVVIFAGYSEP---M---------------KRVIASNEGFCRRVTKFFHFNDFNSEEL 385 (482)
Q Consensus 343 ~~~---------------~~vi~~~~~~~---~---------------~~~~~~~~~l~~R~~~~i~~~~~~~~~~ 385 (482)
.+. +.+|+++++.+ + .......++|++|||..+.++.++.+++
T Consensus 321 ~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 321 DGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKL 396 (499)
T ss_pred cCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHH
Confidence 643 57788876542 0 0112346889999999999998876543
No 229
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.54 E-value=7.9e-14 Score=141.07 Aligned_cols=177 Identities=16% Similarity=0.195 Sum_probs=119.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHH-h-cCCcEEEEeccccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-E-AEGGILFVDEAYRLIP 320 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~-a~~~vl~iDE~d~l~~ 320 (482)
..+++|+||||||||.|++++++++...+ ....++.+++.++...++........+.|. . ....+|+|||++.+..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~--~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKN--PNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAG 225 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC--CCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcC
Confidence 35699999999999999999999987532 123567777777655544332111112222 1 1347999999999865
Q ss_pred CCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCch-hHHHHHhcCccccCCCc--ceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 321 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE-PMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~-~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
+.. ....++..|-...+.+..++++++.+. .+..+ +|.+.+||. ..++|.+|+.+++..|++..+....
T Consensus 226 ~~~-----~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l---~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~ 297 (450)
T PRK00149 226 KER-----TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGL---EERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG 297 (450)
T ss_pred CHH-----HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH---HHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC
Confidence 321 112333334344455666666554432 22223 688999994 5899999999999999999887532
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 398 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
..++++.+..++... .++.|.+..++......
T Consensus 298 -----------~~l~~e~l~~ia~~~-------~~~~R~l~~~l~~l~~~ 329 (450)
T PRK00149 298 -----------IDLPDEVLEFIAKNI-------TSNVRELEGALNRLIAY 329 (450)
T ss_pred -----------CCCCHHHHHHHHcCc-------CCCHHHHHHHHHHHHHH
Confidence 457889999999876 57888888888877654
No 230
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.54 E-value=1e-13 Score=127.77 Aligned_cols=207 Identities=16% Similarity=0.235 Sum_probs=146.4
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|+.+++.+...+.+.+....+ +.-...+|+.|..||||-++||+.+. .....+.||+.+
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k~--------------AmlDAPLLI~GeTGTGKdLlAkaCH~----~S~R~~~pFlal 261 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQKL--------------AMLDAPLLITGETGTGKDLLAKACHL----ASPRHSKPFLAL 261 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHHh--------------hccCCCeEEecCCCchHHHHHHHHhh----cCcccCCCeeEe
Confidence 356777888877666665543322 12345799999999999999999887 455667899999
Q ss_pred eccccc-----ccccccch--hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC----------
Q 011578 282 QRTDLV-----GEFVGHTG--PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---------- 344 (482)
Q Consensus 282 ~~~~~~-----~~~~g~~~--~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------- 344 (482)
+|+.+. ++.+|+.. .--...|+.|.+|.+|+|||..+.+.-| ..||..+.+|
T Consensus 262 NCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp~lQ-----------aKLLRFL~DGtFRRVGee~E 330 (511)
T COG3283 262 NCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSPRLQ-----------AKLLRFLNDGTFRRVGEDHE 330 (511)
T ss_pred ecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCHHHH-----------HHHHHHhcCCceeecCCcce
Confidence 998764 33566543 2345689999999999999999998544 8899999764
Q ss_pred ---cEEEEEecCchhHHHHHhc---CccccCCC-cceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccHHH
Q 011578 345 ---KVVVIFAGYSEPMKRVIAS---NEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 415 (482)
Q Consensus 345 ---~~~vi~~~~~~~~~~~~~~---~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 415 (482)
+|.||+||..+-.+.. +. ...+..|. -..+++|++-. +++..+.+.++.+..... + ...+.++.+.
T Consensus 331 v~vdVRVIcatq~nL~~lv-~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~el---g-~p~pkl~~~~ 405 (511)
T COG3283 331 VHVDVRVICATQVNLVELV-QKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDEL---G-VPRPKLAADL 405 (511)
T ss_pred EEEEEEEEecccccHHHHH-hcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHh---C-CCCCccCHHH
Confidence 3688888766554322 11 12233344 22444454442 677777777776654321 2 3447889999
Q ss_pred HHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 416 IAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
+..+.++.| +||.|+++|++-+|+...
T Consensus 406 ~~~L~~y~W------pGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 406 LTVLTRYAW------PGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HHHHHHcCC------CccHHHHHHHHHHHHHHh
Confidence 999999999 999999999999998763
No 231
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.53 E-value=2.4e-14 Score=145.58 Aligned_cols=205 Identities=17% Similarity=0.179 Sum_probs=142.3
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 284 (482)
+..++|.....+.+.+.+..+ .....+++++|++||||+++|++++... .....+|+.++++
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~--------------a~~~~~vli~Ge~GtGK~~lA~~ih~~s----~~~~~~~v~v~c~ 199 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKI--------------APSDITVLLLGESGTGKEVLARALHQLS----DRKDKRFVAINCA 199 (445)
T ss_pred ccceeecCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCcCHHHHHHHHHHhC----CcCCCCeEEEECC
Confidence 345677766666565543322 1345679999999999999999999843 3445689999988
Q ss_pred ccccc-----ccccch-------hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC--------
Q 011578 285 DLVGE-----FVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------- 344 (482)
Q Consensus 285 ~~~~~-----~~g~~~-------~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------- 344 (482)
.+... .+|+.. ......|+.+.+|+|||||++.|.+..| ..|++.++++
T Consensus 200 ~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q-----------~~l~~~l~~~~~~~~~~~ 268 (445)
T TIGR02915 200 AIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQ-----------AKLLRFLQERVIERLGGR 268 (445)
T ss_pred CCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHH-----------HHHHHHHhhCeEEeCCCC
Confidence 76332 344311 1123356778899999999999998555 7788887653
Q ss_pred -----cEEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccHH
Q 011578 345 -----KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMD 414 (482)
Q Consensus 345 -----~~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 414 (482)
.+.+|++++.+....... -.+.|..|+ ...|.+|++.. +++..+++.++.+.... ++. -...++++
T Consensus 269 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~---~~~-~~~~~~~~ 344 (445)
T TIGR02915 269 EEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARE---LKR-KTKGFTDD 344 (445)
T ss_pred ceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHH---hCC-CCCCCCHH
Confidence 357777776654332210 123344555 45677777764 78888999888876431 111 12468999
Q ss_pred HHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 415 AIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
++..+..+.| +||.+++++++++|+...
T Consensus 345 a~~~L~~~~w------pgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 345 ALRALEAHAW------PGNVRELENKVKRAVIMA 372 (445)
T ss_pred HHHHHHhCCC------CChHHHHHHHHHHHHHhC
Confidence 9999999999 999999999999998754
No 232
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.6e-13 Score=136.72 Aligned_cols=211 Identities=18% Similarity=0.140 Sum_probs=144.8
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhc---CCcEEEEeccc
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAY 316 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d 316 (482)
...+.+++++||+|+|||.|++++++++... .-..+..++++.+.++.+....+.+..+|.++ .++||++|.+|
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~---~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKD---LIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLD 504 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccc---cceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchh
Confidence 3466789999999999999999999988632 22356678888888777766777778888775 56999999999
Q ss_pred ccccCCC--CCCChhHHHHHHHHH----hhhc-C-CcEEEEEecCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHH
Q 011578 317 RLIPMQK--ADDKDYGIEALEEIM----SVMD-G-GKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELA 386 (482)
Q Consensus 317 ~l~~~~~--~~~~~~~~~~~~~ll----~~l~-~-~~~~vi~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~ 386 (482)
.+..... +++......-+..++ ..+- . ..+.+|+++ +....+ +|-|.+ +|+.++.+|.|...+|.
T Consensus 505 ~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~--qe~qtl---~~~L~s~~~Fq~~~~L~ap~~~~R~ 579 (952)
T KOG0735|consen 505 CLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATG--QELQTL---NPLLVSPLLFQIVIALPAPAVTRRK 579 (952)
T ss_pred hhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEec--hhhhhc---ChhhcCccceEEEEecCCcchhHHH
Confidence 9987322 223333333334444 3322 2 445666663 333322 555544 88999999999999999
Q ss_pred HHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhh-hhhcCCCCChhhhhcc
Q 011578 387 KILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD-LRLSFDCLDTDELRTI 465 (482)
Q Consensus 387 ~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~-~r~~~~~~~~~~~~~i 465 (482)
+||+..+++.. ..+..+.|.-++...- ++...++.-.+++|.-.+. .|+.. ....+
T Consensus 580 ~IL~~~~s~~~-----------~~~~~~dLd~ls~~TE------Gy~~~DL~ifVeRai~~a~leris~------~~kll 636 (952)
T KOG0735|consen 580 EILTTIFSKNL-----------SDITMDDLDFLSVKTE------GYLATDLVIFVERAIHEAFLERISN------GPKLL 636 (952)
T ss_pred HHHHHHHHhhh-----------hhhhhHHHHHHHHhcC------CccchhHHHHHHHHHHHHHHHHhcc------Ccccc
Confidence 99999998743 2233444444443332 4557888888888877653 23321 12379
Q ss_pred cHHHHHHHHHHHHhcC
Q 011578 466 TLEDLEAGLKLLLRLG 481 (482)
Q Consensus 466 ~~~d~~~al~~~~~~~ 481 (482)
|.++|.++|+.+.|.-
T Consensus 637 tke~f~ksL~~F~P~a 652 (952)
T KOG0735|consen 637 TKELFEKSLKDFVPLA 652 (952)
T ss_pred hHHHHHHHHHhcChHH
Confidence 9999999999988863
No 233
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=5.2e-14 Score=141.31 Aligned_cols=207 Identities=19% Similarity=0.212 Sum_probs=144.2
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcC---CcEEEEecccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLI 319 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~ 319 (482)
...+||+|+||||||++.++.|++++. +++++++.++.....++++.++...|..|+ ++||||-.+|.+.
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~-------h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~ 503 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGL-------HLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLG 503 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCC-------ceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceee
Confidence 456999999999999999999999998 999999999999999999999999998875 4899999999998
Q ss_pred cCCCCCCChhHHHHHHHHHhh----hcCCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhc
Q 011578 320 PMQKADDKDYGIEALEEIMSV----MDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN 395 (482)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ll~~----l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 395 (482)
-++..+.+--...+++.++.. .....++||+++++. +.+ .+.+++-|-..|.++.|+.+||.+||+.++..
T Consensus 504 id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~--~~l---p~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~ 578 (953)
T KOG0736|consen 504 IDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSI--EDL---PADIQSLFLHEIEVPALSEEQRLEILQWYLNH 578 (953)
T ss_pred ecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccc--ccC---CHHHHHhhhhhccCCCCCHHHHHHHHHHHHhc
Confidence 654432222334555666651 122567777775443 333 77788888899999999999999999999887
Q ss_pred cccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhc-----C------CCCChhhhhc
Q 011578 396 QTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLS-----F------DCLDTDELRT 464 (482)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~-----~------~~~~~~~~~~ 464 (482)
.. +..++....++..+.+.+.. ++..++......+..|+. . +.........
T Consensus 579 ~~---------~n~~v~~k~~a~~t~gfs~~---------~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~ 640 (953)
T KOG0736|consen 579 LP---------LNQDVNLKQLARKTSGFSFG---------DLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFL 640 (953)
T ss_pred cc---------cchHHHHHHHHHhcCCCCHH---------HHHHHhcCchHHHHHHHHhhcccccchhccccccccccce
Confidence 64 33344444444444444322 233333222222211221 1 1111122468
Q ss_pred ccHHHHHHHHHHHHh
Q 011578 465 ITLEDLEAGLKLLLR 479 (482)
Q Consensus 465 i~~~d~~~al~~~~~ 479 (482)
++++||..|+.++++
T Consensus 641 l~~edf~kals~~~~ 655 (953)
T KOG0736|consen 641 LTEEDFDKALSRLQK 655 (953)
T ss_pred ecHHHHHHHHHHHHH
Confidence 999999999998875
No 234
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.6e-12 Score=126.14 Aligned_cols=224 Identities=16% Similarity=0.194 Sum_probs=142.7
Q ss_pred hhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 011578 208 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 287 (482)
Q Consensus 208 i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 287 (482)
+.+.+...+++...+... +....|.+++++||||||||.+++.+.+++....... .++.+++-...
T Consensus 19 l~~Re~ei~~l~~~l~~~------------~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~--~~~yINc~~~~ 84 (366)
T COG1474 19 LPHREEEINQLASFLAPA------------LRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANV--EVVYINCLELR 84 (366)
T ss_pred ccccHHHHHHHHHHHHHH------------hcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccC--ceEEEeeeeCC
Confidence 556666666666553333 2234666799999999999999999999997632211 26778876532
Q ss_pred cc---------------ccccchhhH----HHHHHhc-CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC--c
Q 011578 288 GE---------------FVGHTGPKT----RRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--K 345 (482)
Q Consensus 288 ~~---------------~~g~~~~~~----~~~~~~a-~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~--~ 345 (482)
+. ..|.+...+ .+.+... ..-||.+||+|.|..+.+ +++-.|+...+.. +
T Consensus 85 t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~~~~ 156 (366)
T COG1474 85 TPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGENKVK 156 (366)
T ss_pred CHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccccee
Confidence 22 112222222 2222221 237889999999998655 5666666666554 4
Q ss_pred EEEEEecCchhHHHHHhcCccccCCC-cceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHh
Q 011578 346 VVVIFAGYSEPMKRVIASNEGFCRRV-TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 424 (482)
Q Consensus 346 ~~vi~~~~~~~~~~~~~~~~~l~~R~-~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 424 (482)
+.+|+.++...+... .+|.+.+++ +..|.||+++.+|+..|++...+.. +. ...++++.+...+...
T Consensus 157 v~vi~i~n~~~~~~~--ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~--------~~-~~~~~~~vl~lia~~~- 224 (366)
T COG1474 157 VSIIAVSNDDKFLDY--LDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG--------FS-AGVIDDDVLKLIAALV- 224 (366)
T ss_pred EEEEEEeccHHHHHH--hhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh--------cc-CCCcCccHHHHHHHHH-
Confidence 556665444443332 388999988 6779999999999999999987742 21 2334555554444322
Q ss_pred hHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 425 TEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 425 ~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
....|++|....+++.|.+.+- .+....++.+++..|...+
T Consensus 225 ---a~~~GDAR~aidilr~A~eiAe---------~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 225 ---AAESGDARKAIDILRRAGEIAE---------REGSRKVSEDHVREAQEEI 265 (366)
T ss_pred ---HHcCccHHHHHHHHHHHHHHHH---------hhCCCCcCHHHHHHHHHHh
Confidence 1224578888888888888762 2334577888888775444
No 235
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.50 E-value=1.1e-13 Score=144.84 Aligned_cols=231 Identities=22% Similarity=0.170 Sum_probs=142.1
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcC-------------
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG------------- 271 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~------------- 271 (482)
|..|+|++.++..+.-.. + .....++||.||||||||++|++|++.+....
T Consensus 3 f~~ivGq~~~~~al~~~a--v--------------~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~ 66 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNA--V--------------DPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDD 66 (633)
T ss_pred cchhcChHHHHHHHHHHh--h--------------CCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCC
Confidence 567999999997776431 1 12346799999999999999999999872100
Q ss_pred ---------------CCCCCCeEEeecccccccccccc--------hh--hHHHHHHhcCCcEEEEecccccccCCCCCC
Q 011578 272 ---------------ILPTDRVTEVQRTDLVGEFVGHT--------GP--KTRRRIKEAEGGILFVDEAYRLIPMQKADD 326 (482)
Q Consensus 272 ---------------~~~~~~~~~~~~~~~~~~~~g~~--------~~--~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~ 326 (482)
.....+|+.+..+.....++|.. +. .....+.+|.++||||||++.+.+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~----- 141 (633)
T TIGR02442 67 PEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDH----- 141 (633)
T ss_pred ccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHH-----
Confidence 01135777776655444555541 11 1133566778899999999999984
Q ss_pred ChhHHHHHHHHHhhhcCCc---------------EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCC-HHHHHHHHH
Q 011578 327 KDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEELAKILH 390 (482)
Q Consensus 327 ~~~~~~~~~~ll~~l~~~~---------------~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~~~~il~ 390 (482)
+++.|++.|+.+. +++|++.++..- . ..++|.+||+..+.++.+. .+++.++++
T Consensus 142 ------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg-~---l~~~L~dR~~l~i~v~~~~~~~~~~~il~ 211 (633)
T TIGR02442 142 ------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEG-D---LRPQLLDRFGLCVDVAAPRDPEERVEIIR 211 (633)
T ss_pred ------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCC-C---CCHHHHhhcceEEEccCCCchHHHHHHHH
Confidence 4488999998653 566666554321 1 2678999999999988775 577788887
Q ss_pred HHHhcccccc-c-----------------cccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhh
Q 011578 391 IKMNNQTEDS-L-----------------LYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRL 452 (482)
Q Consensus 391 ~~l~~~~~~~-~-----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~ 452 (482)
..+....... . ...+.-...++.+.+..+...+.... ....|....+++.|...++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~---i~s~Ra~i~~~r~Ara~AaL-- 286 (633)
T TIGR02442 212 RRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFG---VDGHRADIVMARAARALAAL-- 286 (633)
T ss_pred HHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhC---CCCccHHHHHHHHHHHHHHH--
Confidence 6443111000 0 00001113446666666655543110 11223444444444444322
Q ss_pred cCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 453 SFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 453 ~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
+....|+.+|+.+|+.-+-
T Consensus 287 -------~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 287 -------DGRRRVTAEDVREAAELVL 305 (633)
T ss_pred -------cCCCcCCHHHHHHHHHHHh
Confidence 3446899999999987764
No 236
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.50 E-value=2.6e-13 Score=130.02 Aligned_cols=230 Identities=18% Similarity=0.187 Sum_probs=132.6
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc-------CC-CCC-
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV-------GI-LPT- 275 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~-------~~-~~~- 275 (482)
|..|+|++.+|..+.-.. + .....++++.|+||+|||+++++++..+... .- ...
T Consensus 3 f~~ivgq~~~~~al~~~~--~--------------~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~ 66 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNV--I--------------DPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSD 66 (337)
T ss_pred ccccccHHHHHHHHHHHh--c--------------CCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCC
Confidence 567899999998876431 1 1235789999999999999999999887320 00 000
Q ss_pred ------------------------CCeEEeecccccccccccc--------hhh--HHHHHHhcCCcEEEEecccccccC
Q 011578 276 ------------------------DRVTEVQRTDLVGEFVGHT--------GPK--TRRRIKEAEGGILFVDEAYRLIPM 321 (482)
Q Consensus 276 ------------------------~~~~~~~~~~~~~~~~g~~--------~~~--~~~~~~~a~~~vl~iDE~d~l~~~ 321 (482)
.+|..+........++|.. +.. -..++.++.+++|||||++.+.++
T Consensus 67 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~ 146 (337)
T TIGR02030 67 PEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDH 146 (337)
T ss_pred ccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHH
Confidence 1112211111111344431 111 123556778899999999999874
Q ss_pred CCCCCChhHHHHHHHHHhhhcCCc---------------EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCH-HHH
Q 011578 322 QKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EEL 385 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~l~~~~---------------~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~-~~~ 385 (482)
.| +.|++.|+++. ++++++.++.. .. ..+++.+||...+.++.|+. +++
T Consensus 147 ~Q-----------~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~e-g~---l~~~LldRf~l~i~l~~p~~~eer 211 (337)
T TIGR02030 147 LV-----------DVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEE-GE---LRPQLLDRFGLHAEIRTVRDVELR 211 (337)
T ss_pred HH-----------HHHHHHHHhCCeEEEECCEEEEcCCCEEEEecccccc-CC---CCHHHHhhcceEEECCCCCCHHHH
Confidence 44 88888887643 34444433321 12 27889999999999999986 888
Q ss_pred HHHHHHHHhccccccc------------------cccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 386 AKILHIKMNNQTEDSL------------------LYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 386 ~~il~~~l~~~~~~~~------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
.+|++........... ....--...++++.+..++.-..... ...-|.-..++..|...
T Consensus 212 ~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~---~~s~Ra~i~l~raArA~ 288 (337)
T TIGR02030 212 VEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELD---VDGLRGELTLNRAAKAL 288 (337)
T ss_pred HHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHC---CCCCcHHHHHHHHHHHH
Confidence 9999874332100000 00001123345555555554332111 11224445555555554
Q ss_pred hhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 448 LDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 448 ~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
++. +....|+.+|+..+..-+
T Consensus 289 Aal---------~GR~~V~~dDv~~~a~~v 309 (337)
T TIGR02030 289 AAF---------EGRTEVTVDDIRRVAVLA 309 (337)
T ss_pred HHH---------cCCCCCCHHHHHHHHHHH
Confidence 422 234578999998877654
No 237
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.49 E-value=5.5e-13 Score=133.61 Aligned_cols=177 Identities=15% Similarity=0.168 Sum_probs=116.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccch-hhHHHHHHhc--CCcEEEEecccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG-PKTRRRIKEA--EGGILFVDEAYRLI 319 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~a--~~~vl~iDE~d~l~ 319 (482)
..+++||||||+|||.|++++++.+..... ...++.+++.++...++.... ..+.+..+.. ...+|+|||++.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~--~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~ 207 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEP--DLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLI 207 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCC--CCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhc
Confidence 346999999999999999999998864221 235666777665544432110 1111222221 35799999999886
Q ss_pred cCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecC-chhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhcc
Q 011578 320 PMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY-SEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQ 396 (482)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~-~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~ 396 (482)
.+.. ...+.+..+-...+.+..+|++++. +..+..+ .+.+.+|| ...+.+.+|+.+++..|++..+...
T Consensus 208 ~~~~-----~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l---~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~ 279 (440)
T PRK14088 208 GKTG-----VQTELFHTFNELHDSGKQIVICSDREPQKLSEF---QDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIE 279 (440)
T ss_pred CcHH-----HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH---HHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhc
Confidence 5321 1123334444444556655555532 2333333 67889999 4588999999999999999987753
Q ss_pred ccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 397 TEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
. ..++++.+..++... .+|.|.+..++.+....
T Consensus 280 ~-----------~~l~~ev~~~Ia~~~-------~~~~R~L~g~l~~l~~~ 312 (440)
T PRK14088 280 H-----------GELPEEVLNFVAENV-------DDNLRRLRGAIIKLLVY 312 (440)
T ss_pred C-----------CCCCHHHHHHHHhcc-------ccCHHHHHHHHHHHHHH
Confidence 2 356788888888876 57888888888776543
No 238
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.49 E-value=1.4e-13 Score=140.80 Aligned_cols=202 Identities=17% Similarity=0.222 Sum_probs=142.0
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
.++|.+.....+.+.+... ......+++.|++||||+++|++++.. +.....+|+.+++..+
T Consensus 135 ~lig~s~~~~~v~~~i~~~--------------a~~~~~vli~Ge~GtGK~~~A~~ih~~----~~~~~~~~~~~~c~~~ 196 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRL--------------SRSDITVLINGESGTGKELVARALHRH----SPRANGPFIALNMAAI 196 (463)
T ss_pred ceeecCHHHHHHHHHHHHH--------------hCcCCeEEEECCCCCCHHHHHHHHHHh----CCCCCCCeEEEeCCCC
Confidence 4677766655555543322 134567999999999999999999984 3344679999998765
Q ss_pred ccc-----ccccchh-------hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC----------
Q 011578 287 VGE-----FVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---------- 344 (482)
Q Consensus 287 ~~~-----~~g~~~~-------~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------- 344 (482)
... .+|+... .....|+.+.+|+||||||+.|....| ..|++.++.+
T Consensus 197 ~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q-----------~~ll~~l~~~~~~~~~~~~~ 265 (463)
T TIGR01818 197 PKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQ-----------TRLLRVLADGEFYRVGGRTP 265 (463)
T ss_pred CHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHH-----------HHHHHHHhcCcEEECCCCce
Confidence 332 3443211 112346677889999999999988555 7777777653
Q ss_pred ---cEEEEEecCchhHHHHHhc---CccccCCCc-ceeeCCCCC--HHHHHHHHHHHHhccccccccccccccCcccHHH
Q 011578 345 ---KVVVIFAGYSEPMKRVIAS---NEGFCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 415 (482)
Q Consensus 345 ---~~~vi~~~~~~~~~~~~~~---~~~l~~R~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 415 (482)
.+.+|++++.+....+ .. .+.|..|+. ..|++|++. .+++..+++.++.+.... ++. -...+++++
T Consensus 266 ~~~~~rii~~~~~~l~~~~-~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~---~~~-~~~~~~~~a 340 (463)
T TIGR01818 266 IKVDVRIVAATHQNLEALV-RQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARE---LDV-EPKLLDPEA 340 (463)
T ss_pred eeeeeEEEEeCCCCHHHHH-HcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHH---hCC-CCCCcCHHH
Confidence 3467777665543322 11 234555663 588899988 799999999999876531 111 124689999
Q ss_pred HHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 416 IAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
+..+..+.| +||.|+|++++++++...
T Consensus 341 ~~~L~~~~w------pgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 341 LERLKQLRW------PGNVRQLENLCRWLTVMA 367 (463)
T ss_pred HHHHHhCCC------CChHHHHHHHHHHHHHhC
Confidence 999999999 999999999999998764
No 239
>PRK08727 hypothetical protein; Validated
Probab=99.49 E-value=2e-12 Score=118.86 Aligned_cols=186 Identities=15% Similarity=0.121 Sum_probs=118.3
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcC-CcEEEEecccccccCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE-GGILFVDEAYRLIPMQ 322 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~-~~vl~iDE~d~l~~~~ 322 (482)
..++|+||+|||||.++.++++.+...+. ..+.++..++. ....+.++... ..+|+|||++.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~----~~~y~~~~~~~--------~~~~~~~~~l~~~dlLiIDDi~~l~~~~ 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGR----SSAYLPLQAAA--------GRLRDALEALEGRSLVALDGLESIAGQR 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC----cEEEEeHHHhh--------hhHHHHHHHHhcCCEEEEeCcccccCCh
Confidence 45999999999999999999998865432 23333332222 12334444433 3699999999887533
Q ss_pred CCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhcccccc
Q 011578 323 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTEDS 400 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~~~~ 400 (482)
. ...++-.++....+....+|++++..+ ...-..+|.+.+|| ...++|++|+.+++.+|++.+..+.
T Consensus 110 ~------~~~~lf~l~n~~~~~~~~vI~ts~~~p-~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~---- 178 (233)
T PRK08727 110 E------DEVALFDFHNRARAAGITLLYTARQMP-DGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR---- 178 (233)
T ss_pred H------HHHHHHHHHHHHHHcCCeEEEECCCCh-hhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc----
Confidence 2 112222333333222333444433222 22222378999997 6789999999999999999876653
Q ss_pred ccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHH
Q 011578 401 LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 476 (482)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~ 476 (482)
+ ..++++++..+++.. .++.+.+.++++........ ....||...+++.++.
T Consensus 179 ---~----l~l~~e~~~~La~~~-------~rd~r~~l~~L~~l~~~~~~----------~~~~it~~~~~~~l~~ 230 (233)
T PRK08727 179 ---G----LALDEAAIDWLLTHG-------ERELAGLVALLDRLDRESLA----------AKRRVTVPFLRRVLEE 230 (233)
T ss_pred ---C----CCCCHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHH----------hCCCCCHHHHHHHHhh
Confidence 2 367889999999875 46677777778876542211 1135888888877753
No 240
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.48 E-value=1e-13 Score=141.51 Aligned_cols=181 Identities=14% Similarity=0.157 Sum_probs=128.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-----ccccchh-------hHHHHHHhcCCcE
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----FVGHTGP-------KTRRRIKEAEGGI 309 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~-------~~~~~~~~a~~~v 309 (482)
...+++++|++||||+++|++++.. .....++|+.+++..+... .+|+... .....|..+.+|+
T Consensus 165 ~~~~vli~Ge~GtGK~~lA~~ih~~----s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 240 (457)
T PRK11361 165 SQASVLISGESGTGKELIARAIHYN----SRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGT 240 (457)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHh----CCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCE
Confidence 4568999999999999999999873 3345679999999876332 3443211 1123567788899
Q ss_pred EEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-------------cEEEEEecCchhHHHHHhc---CccccCCC-c
Q 011578 310 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------KVVVIFAGYSEPMKRVIAS---NEGFCRRV-T 372 (482)
Q Consensus 310 l~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------------~~~vi~~~~~~~~~~~~~~---~~~l~~R~-~ 372 (482)
|||||++.+.+..| ..|+..++.+ .+.+|++++.+... +... .+.+..|+ .
T Consensus 241 l~ld~i~~l~~~~q-----------~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~-~~~~g~~~~~l~~~l~~ 308 (457)
T PRK11361 241 LLLDEIGEMPLVLQ-----------AKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQA-MVKEGTFREDLFYRLNV 308 (457)
T ss_pred EEEechhhCCHHHH-----------HHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHH-HHHcCCchHHHHHHhcc
Confidence 99999999998555 7788877653 25777777655432 2111 23444555 4
Q ss_pred ceeeCCCCC--HHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 373 KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 373 ~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
..|.+|++. .+++..++..++.+.... ++ .-...++++++..+..+.| +||.+++++++++|+...
T Consensus 309 ~~i~~ppLreR~~di~~l~~~~l~~~~~~---~~-~~~~~~~~~a~~~L~~~~w------pgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 309 IHLILPPLRDRREDISLLANHFLQKFSSE---NQ-RDIIDIDPMAMSLLTAWSW------PGNIRELSNVIERAVVMN 376 (457)
T ss_pred ceecCCChhhchhhHHHHHHHHHHHHHHH---cC-CCCCCcCHHHHHHHHcCCC------CCcHHHHHHHHHHHHHhC
Confidence 566777776 478888888888876431 11 1125789999999999999 999999999999998754
No 241
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=7.1e-14 Score=133.52 Aligned_cols=100 Identities=27% Similarity=0.314 Sum_probs=80.1
Q ss_pred HHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccC
Q 011578 52 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIR 131 (482)
Q Consensus 52 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~ 131 (482)
|.=|+..|.+++|+-.+. .-.|+...|..|-|+||-|+..||++||++|++.|++||+.|.+||||||+|+ +
T Consensus 554 LLDaaLeGEldlVq~~i~----ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAA----S 625 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIY----EVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAA----S 625 (752)
T ss_pred HHhhhhcchHHHHHHHHH----hhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhh----h
Confidence 345677888888888776 45567777888888888888888888888888888888888888888888888 8
Q ss_pred CChHHHHHHHhhCCCCccccCC-CCCChh
Q 011578 132 SEDYATVKTLLEYNADCSAKDN-EGKTPL 159 (482)
Q Consensus 132 ~~~~~~v~~Ll~~gad~~~~d~-~g~tpl 159 (482)
.++..+|+.|++.|+-+.+... ++.||.
T Consensus 626 CNnv~~ckqLVe~GaavfAsTlSDmeTa~ 654 (752)
T KOG0515|consen 626 CNNVPMCKQLVESGAAVFASTLSDMETAA 654 (752)
T ss_pred cCchHHHHHHHhccceEEeeecccccchh
Confidence 8888888888888887765543 667776
No 242
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=9e-14 Score=132.82 Aligned_cols=122 Identities=26% Similarity=0.187 Sum_probs=104.4
Q ss_pred chHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHH
Q 011578 14 PATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA 93 (482)
Q Consensus 14 ~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~ 93 (482)
...|..|+..|.++.|+.++.+ -.++...++. |.|+||-|+-.||.+||++|++ .|+++|..|.+||||||+||
T Consensus 551 LaLLLDaaLeGEldlVq~~i~e-v~DpSqpNdE-GITaLHNAiCaghyeIVkFLi~----~ganVNa~DSdGWTPLHCAA 624 (752)
T KOG0515|consen 551 LALLLDAALEGELDLVQRIIYE-VTDPSQPNDE-GITALHNAICAGHYEIVKFLIE----FGANVNAADSDGWTPLHCAA 624 (752)
T ss_pred HHHHHhhhhcchHHHHHHHHHh-hcCCCCCCcc-chhHHhhhhhcchhHHHHHHHh----cCCcccCccCCCCchhhhhh
Confidence 3457789999999999999854 5666777776 9999999999999999999999 68999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCccccc-cCCCcceeeehhhccCCChHHHHHHHhh
Q 011578 94 KNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLSVWYSIRSEDYATVKTLLE 143 (482)
Q Consensus 94 ~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A~~~~~~~~~~~~v~~Ll~ 143 (482)
.++++.+++.|++.|+-+-+.. .++.|+...+-.+ ..|..+|.+||..
T Consensus 625 SCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~--eeGY~~CsqyL~~ 673 (752)
T KOG0515|consen 625 SCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEM--EEGYDQCSQYLYG 673 (752)
T ss_pred hcCchHHHHHHHhccceEEeeecccccchhhhcchh--hhhHHHHHHHHHH
Confidence 9999999999999998876543 5677887655433 6788999999964
No 243
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.48 E-value=3e-13 Score=140.14 Aligned_cols=149 Identities=13% Similarity=0.182 Sum_probs=99.2
Q ss_pred HHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-----------------------cEEEEEecCchhH
Q 011578 301 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSEPM 357 (482)
Q Consensus 301 ~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-----------------------~~~vi~~~~~~~~ 357 (482)
.+.+|.+|+|||||++.|.+..| ..|++.|+.+ ++.+|++++++..
T Consensus 212 ~L~~AngGtL~Ldei~~L~~~~q-----------~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l 280 (608)
T TIGR00764 212 AIHRAHKGVLYIDEIKTMPLEVQ-----------QYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDL 280 (608)
T ss_pred ceEECCCCEEEEEChHhCCHHHH-----------HHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHH
Confidence 45677889999999999987444 6677766532 4577888776644
Q ss_pred HHHHhcCccccCCCc---ceeeCCC---CCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHh---h
Q 011578 358 KRVIASNEGFCRRVT---KFFHFND---FNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEK---Q 428 (482)
Q Consensus 358 ~~~~~~~~~l~~R~~---~~i~~~~---~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~ 428 (482)
.. .+|+|++||+ ..+.|+. .+.+.+..+++...+...+ .| ..+.++.++++++.+.+.+.. .
T Consensus 281 ~~---l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r----~G--~l~~~s~~Av~~Li~~~~R~ag~r~ 351 (608)
T TIGR00764 281 EG---MHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKK----DG--RIPHFTRDAVEEIVREAQRRAGRKD 351 (608)
T ss_pred hh---cCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHH----hC--CCCcCCHHHHHHHHHHHHHHHhccc
Confidence 43 3899999998 6666643 3466666665544333221 11 234789999999998766422 1
Q ss_pred ccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 429 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 429 ~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
.-..+.|.+.++++.|...+..+ ....|+.+|+.+|++...
T Consensus 352 ~lsl~~R~L~~llR~A~~iA~~~---------~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 352 HLTLRLRELGGLVRAAGDIAKSS---------GKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhc---------CCceecHHHHHHHHHHHH
Confidence 12356799999999985443111 235799999999987543
No 244
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.48 E-value=8e-13 Score=135.19 Aligned_cols=242 Identities=15% Similarity=0.202 Sum_probs=145.7
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEE---eec
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE---VQR 283 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~---~~~ 283 (482)
.+.|++.+|..+.-.+-.=. ......+ .......++||+|+||||||++|+++++.+... .|+. .++
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~--~~~~~~~--~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~------~~~~~~~~~~ 273 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGV--HKNLPDG--MKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA------VYTTGKGSSA 273 (509)
T ss_pred cccCcHHHHHHHHHHHhCCC--ccccCCC--ccccccceEEEeCCCChhHHHHHHHHHHHcCcc------eEcCCCCCCc
Confidence 57899988777764321000 0000001 111234589999999999999999999976421 1111 111
Q ss_pred cccccc-----ccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-------------
Q 011578 284 TDLVGE-----FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK------------- 345 (482)
Q Consensus 284 ~~~~~~-----~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~------------- 345 (482)
..+... ..|+. ..-...+..|.+|+++|||++.+.+..+ ..|++.|+.+.
T Consensus 274 ~~l~~~~~~~~~~g~~-~~~~G~l~~A~~Gil~iDEi~~l~~~~q-----------~~L~e~me~~~i~i~k~G~~~~l~ 341 (509)
T smart00350 274 VGLTAAVTRDPETREF-TLEGGALVLADNGVCCIDEFDKMDDSDR-----------TAIHEAMEQQTISIAKAGITTTLN 341 (509)
T ss_pred CCccccceEccCcceE-EecCccEEecCCCEEEEechhhCCHHHH-----------HHHHHHHhcCEEEEEeCCEEEEec
Confidence 112111 11110 0011234567889999999999987554 77888886533
Q ss_pred --EEEEEecCchhH--------HHHHhcCccccCCCcceeeC-CCCCHHHHHHHHHHHHhccccc------c----c---
Q 011578 346 --VVVIFAGYSEPM--------KRVIASNEGFCRRVTKFFHF-NDFNSEELAKILHIKMNNQTED------S----L--- 401 (482)
Q Consensus 346 --~~vi~~~~~~~~--------~~~~~~~~~l~~R~~~~i~~-~~~~~~~~~~il~~~l~~~~~~------~----~--- 401 (482)
..||+|+++..- ..-+...|++++|||.++.+ +.|+.+...+|++..+...... . .
T Consensus 342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
T smart00350 342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQE 421 (509)
T ss_pred CCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHH
Confidence 466676654321 11123479999999886655 7899988899998866432100 0 0
Q ss_pred ------ccccc-ccCcccHHHHHHHHHHHhhHhhc---------cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcc
Q 011578 402 ------LYGFK-LHSSCSMDAIAALIEKETTEKQR---------REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTI 465 (482)
Q Consensus 402 ------~~~~~-~~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i 465 (482)
.+--. +.+.+++++...+...+...+.. .+...|.+..+++.|...+..+.. ..|
T Consensus 422 ~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r---------~~V 492 (509)
T smart00350 422 FLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLS---------DVV 492 (509)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCC---------Ccc
Confidence 00001 44677888888887776643321 123457788888887777655543 479
Q ss_pred cHHHHHHHHHHHHh
Q 011578 466 TLEDLEAGLKLLLR 479 (482)
Q Consensus 466 ~~~d~~~al~~~~~ 479 (482)
+.+|+++|+.-+..
T Consensus 493 ~~~Dv~~ai~l~~~ 506 (509)
T smart00350 493 EEADVEEAIRLLRE 506 (509)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
No 245
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.47 E-value=2.1e-14 Score=100.13 Aligned_cols=50 Identities=48% Similarity=0.770 Sum_probs=26.0
Q ss_pred cccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeee
Q 011578 76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 125 (482)
Q Consensus 76 ~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A 125 (482)
.+++.+|..|+||||+||..|+.+++++|++.|++++.+|.+|+||||+|
T Consensus 7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 66777777777777777777777777777777777777777777777765
No 246
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.47 E-value=1.3e-13 Score=119.60 Aligned_cols=109 Identities=17% Similarity=0.376 Sum_probs=76.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHH-------hcCCcEEEEec
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-------EAEGGILFVDE 314 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~a~~~vl~iDE 314 (482)
+...++|.||+|||||.+|++||+.+.. -...+++.++.+.+... ++....+...+. ...++||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~---~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDE 76 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFV---GSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDE 76 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT----SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEET
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhcc---CCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHH
Confidence 3457999999999999999999998873 23448888998877651 111222223222 23447999999
Q ss_pred ccccccCCCCCCChhHHHHHHHHHhhhcCC-------------cEEEEEecCch
Q 011578 315 AYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------KVVVIFAGYSE 355 (482)
Q Consensus 315 ~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------------~~~vi~~~~~~ 355 (482)
||+++++.+.+.+.....+.+.||+.||++ +.++|+|++-.
T Consensus 77 idKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 77 IDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp GGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred HhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 999999744444556678999999999863 35777777533
No 247
>PRK15115 response regulator GlrR; Provisional
Probab=99.47 E-value=1.6e-13 Score=139.41 Aligned_cols=182 Identities=17% Similarity=0.208 Sum_probs=127.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-----ccccch-------hhHHHHHHhcCCcE
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----FVGHTG-------PKTRRRIKEAEGGI 309 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~-------~~~~~~~~~a~~~v 309 (482)
....++++|++|||||++|+++++... ....+|+.+++..+... .+|+.. ......|+.+.+++
T Consensus 156 ~~~~vli~Ge~GtGk~~lA~~ih~~s~----r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 156 SDVSVLINGQSGTGKEILAQAIHNASP----RASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CCCeEEEEcCCcchHHHHHHHHHHhcC----CCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 456799999999999999999998543 34568999998865332 333311 11123567788899
Q ss_pred EEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-------------cEEEEEecCchhHHHHHhc--CccccCCC-cc
Q 011578 310 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------KVVVIFAGYSEPMKRVIAS--NEGFCRRV-TK 373 (482)
Q Consensus 310 l~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------------~~~vi~~~~~~~~~~~~~~--~~~l~~R~-~~ 373 (482)
|||||||.|.+..| ..|+..++.+ ++.+|++++.+....+... .+.+..|+ ..
T Consensus 232 l~l~~i~~l~~~~q-----------~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~ 300 (444)
T PRK15115 232 LFLDEIGDMPAPLQ-----------VKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 (444)
T ss_pred EEEEccccCCHHHH-----------HHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhcee
Confidence 99999999998655 7788887653 3577777665533322110 13334455 44
Q ss_pred eeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 374 FFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 374 ~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
.|.+|++.. +++..+++.++.+.... ++ +....++++++..+..+.| +||.|++++++++|+...
T Consensus 301 ~i~lPpLr~R~eDi~~l~~~~l~~~~~~---~~-~~~~~~~~~a~~~L~~~~W------pgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 301 SLKIPALAERTEDIPLLANHLLRQAAER---HK-PFVRAFSTDAMKRLMTASW------PGNVRQLVNVIEQCVALT 367 (444)
T ss_pred eecCCChHhccccHHHHHHHHHHHHHHH---hC-CCCCCcCHHHHHHHHhCCC------CChHHHHHHHHHHHHHhC
Confidence 666666664 78888889988875421 11 1223689999999999999 999999999999988753
No 248
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.46 E-value=6.5e-14 Score=143.87 Aligned_cols=176 Identities=21% Similarity=0.240 Sum_probs=109.9
Q ss_pred ccccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCC-CCCCChHHHHHHhCCcHHHHHHHHcCCCC----------
Q 011578 5 QDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERN-PVMAQTPLHVSAGYNKAEIVKSLLEWPGN---------- 73 (482)
Q Consensus 5 ~~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~-~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~---------- 73 (482)
+++.++-+++|||-+|...|..++|..+|.. |..+|.+. ...|.+||++|+.+||...++.|++.|.+
T Consensus 849 nkehrnvsDytPlsla~Sggy~~iI~~llS~-GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrn 927 (2131)
T KOG4369|consen 849 NKEHRNVSDYTPLSLARSGGYTKIIHALLSS-GSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRN 927 (2131)
T ss_pred cccccchhhcCchhhhcCcchHHHHHHHhhc-ccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccc
Confidence 4455555556666666666666666655533 33343332 22255566666666665555555552211
Q ss_pred --------------------CCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCcccc--ccCCCcceeeehhhccC
Q 011578 74 --------------------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAK--ANNGMTPLHLSVWYSIR 131 (482)
Q Consensus 74 --------------------~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~--d~~g~tpLh~A~~~~~~ 131 (482)
..+++..+.+.|.|||+-++..|.+++-.+||..|+|+|+. -....|+|-+++ .
T Consensus 928 Taltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a----~ 1003 (2131)
T KOG4369|consen 928 TALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPA----N 1003 (2131)
T ss_pred cceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeec----C
Confidence 23444444455566666666666666666666666665542 122345555555 6
Q ss_pred CChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 132 SEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 132 ~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
+||...|..|+...+.+.++|++|.|+| +.++.++....+.+|..++++.+...
T Consensus 1004 kGh~kfv~~lln~~atv~v~NkkG~T~L-wla~~Gg~lss~~il~~~~ad~d~qd 1057 (2131)
T KOG4369|consen 1004 KGHTKFVPKLLNGDATVRVPNKKGCTVL-WLASAGGALSSCPILVSSVADADQQD 1057 (2131)
T ss_pred CCchhhhHHhhCCccceecccCCCCccc-chhccCCccccchHHhhcccChhhhh
Confidence 7778888888877777888999999999 99999999999999999988766554
No 249
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.46 E-value=1.5e-13 Score=95.23 Aligned_cols=54 Identities=50% Similarity=0.667 Sum_probs=37.3
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHH
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 105 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll 105 (482)
|+||||+||..|+.+++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~----~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLE----HGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHH----TTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 5678888888888888888887 46777777878888888888888888887775
No 250
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.45 E-value=1.7e-13 Score=138.41 Aligned_cols=125 Identities=27% Similarity=0.308 Sum_probs=112.6
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCC----------------------CCCCChHHHHHHhCCcHHHHHHHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERN----------------------PVMAQTPLHVSAGYNKAEIVKSLL 68 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~----------------------~~~g~tpLh~A~~~g~~~~v~~Ll 68 (482)
--|+||||.|+.+.+.+.|+.||.. +++++.+- -+.|..||.+||-.++.+|+++|+
T Consensus 182 Y~GqSaLHiAIv~~~~~~V~lLl~~-gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl 260 (782)
T KOG3676|consen 182 YYGQSALHIAIVNRDAELVRLLLAA-GADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL 260 (782)
T ss_pred hcCcchHHHHHHhccHHHHHHHHHc-CCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence 4589999999999999999999854 55554331 235789999999999999999999
Q ss_pred cCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCC--ccccccCCCcceeeehhhccCCChHHHHHHHhhC
Q 011578 69 EWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF--IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144 (482)
Q Consensus 69 ~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~--~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~ 144 (482)
+ .++|++.+|..|+|.||..+..-..++..+++++|++ ...+|+.|-|||-+|+ ..|..+|.+.+++.
T Consensus 261 ~----~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAa----klGk~emf~~ile~ 330 (782)
T KOG3676|consen 261 A----HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAA----KLGKKEMFQHILER 330 (782)
T ss_pred h----cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHH----HhhhHHHHHHHHHh
Confidence 9 6899999999999999999999889999999999999 8899999999999999 99999999999987
No 251
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.45 E-value=2.3e-13 Score=117.73 Aligned_cols=104 Identities=24% Similarity=0.378 Sum_probs=76.3
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-----ccccch-------hhHHHHHHhcCCc
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----FVGHTG-------PKTRRRIKEAEGG 308 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~-------~~~~~~~~~a~~~ 308 (482)
..+.+|+++|++||||+++|++|++ .+.....||+.++++.+..+ .+|... ......|++|.+|
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~----~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G 95 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN----NSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG 95 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH----CSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH----hhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce
Confidence 4668999999999999999999998 55556789999999876433 455421 1234789999999
Q ss_pred EEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-------------cEEEEEecCchhHHH
Q 011578 309 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------KVVVIFAGYSEPMKR 359 (482)
Q Consensus 309 vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------------~~~vi~~~~~~~~~~ 359 (482)
+||||||+.|.+..| ..|++.|+.+ ++.+|++|+.+....
T Consensus 96 tL~Ld~I~~L~~~~Q-----------~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~ 148 (168)
T PF00158_consen 96 TLFLDEIEDLPPELQ-----------AKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEEL 148 (168)
T ss_dssp EEEEETGGGS-HHHH-----------HHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHH
T ss_pred EEeecchhhhHHHHH-----------HHHHHHHhhchhccccccccccccceEEeecCcCHHHH
Confidence 999999999998555 8888888742 468888877665443
No 252
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.44 E-value=1.3e-12 Score=136.87 Aligned_cols=251 Identities=14% Similarity=0.111 Sum_probs=148.5
Q ss_pred hhhchHHHHHHHHHHH-HHHhHHHHHHHc--C--CCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 207 NIVGLHELKIQLRKWA-KGMLLDERRKAL--G--LKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~-~~~~~~~~~~~~--~--~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
.|.|++.+|+.|.-.+ ............ + .........+|||.|+||||||.+|+++++......+....++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 5889999988775332 111000000000 0 0011234568999999999999999999996543323333455544
Q ss_pred eccccccccccc-chh-h-HHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC--------------
Q 011578 282 QRTDLVGEFVGH-TGP-K-TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------- 344 (482)
Q Consensus 282 ~~~~~~~~~~g~-~~~-~-~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------------- 344 (482)
....... +.+. ++. . -...+..|.+|+++|||++++.+..| ..|++.|+.+
T Consensus 531 gLTa~~~-~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q-----------~aLlEaMEqqtIsI~KaGi~~tL~ 598 (915)
T PTZ00111 531 GLTASIK-FNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESR-----------LSLYEVMEQQTVTIAKAGIVATLK 598 (915)
T ss_pred cccchhh-hcccccCcccccCCcEEEcCCCeEEecchhhCCHHHH-----------HHHHHHHhCCEEEEecCCcceecC
Confidence 3333221 1110 111 1 12345678889999999999987555 7788888653
Q ss_pred -cEEEEEecCchh--------HHHHHhcCccccCCCcceee-CCCCCHHHHHHHHHHHHhcccc----------------
Q 011578 345 -KVVVIFAGYSEP--------MKRVIASNEGFCRRVTKFFH-FNDFNSEELAKILHIKMNNQTE---------------- 398 (482)
Q Consensus 345 -~~~vi~~~~~~~--------~~~~~~~~~~l~~R~~~~i~-~~~~~~~~~~~il~~~l~~~~~---------------- 398 (482)
+..||+|+++.. +..-+...|++++|||.++. ++.|+.+.=..|.+..++....
T Consensus 599 ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~ 678 (915)
T PTZ00111 599 AETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRS 678 (915)
T ss_pred CCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhcc
Confidence 346777766531 11223346999999988765 5777765545554444421100
Q ss_pred -------------------------cccccc-ccccCcccHHHHHHHHHHHhhHhhc-----------------------
Q 011578 399 -------------------------DSLLYG-FKLHSSCSMDAIAALIEKETTEKQR----------------------- 429 (482)
Q Consensus 399 -------------------------~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~----------------------- 429 (482)
....|. -.+.|.+++++-..+.+.|..-+..
T Consensus 679 ~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (915)
T PTZ00111 679 NTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYY 758 (915)
T ss_pred ccccccccccccccccCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhhhcccccccccccccccccccccc
Confidence 000011 1346778888888887776643321
Q ss_pred -------cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 430 -------REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 430 -------~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
.+...|.|..++..|...+..|+. ..|+.+|+++|+.-+.
T Consensus 759 ~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs---------~~Vt~~Dv~~Ai~L~~ 805 (915)
T PTZ00111 759 QSSGTRMIYVSSRMISSIIRISVSLARMRLS---------TVVTPADALQAVQIVK 805 (915)
T ss_pred ccccCCcccccHHHHHHHHHHHHHHhhhcCc---------CcccHHHHHHHHHHHH
Confidence 123468899999888877766665 4688999998887664
No 253
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.44 E-value=2.5e-13 Score=120.69 Aligned_cols=121 Identities=24% Similarity=0.244 Sum_probs=108.1
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCccccc-CcCCCChHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA-QNMYGETPL 89 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~~~~g~tpL 89 (482)
+.-..||..++.+|+.+....||.. ...+|..|+. |+|||..|++.|+.++|++|+++ |+|+|. ++..++|||
T Consensus 10 d~~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~s-GMs~LahAaykGnl~~v~lll~~----gaDvN~~qhg~~YTpL 83 (396)
T KOG1710|consen 10 DAPKSPLLEAIDKNDTEAALALLST-VRQVNQRDPS-GMSVLAHAAYKGNLTLVELLLEL----GADVNDKQHGTLYTPL 83 (396)
T ss_pred cchhhHHHHHHccCcHHHHHHHHHH-hhhhhccCCC-cccHHHHHHhcCcHHHHHHHHHh----CCCcCcccccccccHH
Confidence 4567899999999999999999954 6668999987 99999999999999999999994 667775 567889999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHH
Q 011578 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL 141 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~L 141 (482)
|+|+-+|+.++..+|++.|+.+...|.-|+|+-.+|+ .-|+.++|..+
T Consensus 84 mFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAA----FVG~H~CV~iI 131 (396)
T KOG1710|consen 84 MFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAA----FVGHHECVAII 131 (396)
T ss_pred HHHHHcCCchHHHHHHhccCccccccchhhhHHHHHH----HhcchHHHHHH
Confidence 9999999999999999999999999999999999999 67788887654
No 254
>PRK06620 hypothetical protein; Validated
Probab=99.44 E-value=1.2e-12 Score=118.25 Aligned_cols=167 Identities=12% Similarity=0.073 Sum_probs=110.6
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQK 323 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~ 323 (482)
..++||||||||||.+++++++.... .++. .... ..+.+ ....+|+|||||.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~-----------~~~~~--~~~d~lliDdi~~~~~--- 99 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFF-----------NEEIL--EKYNAFIIEDIENWQE--- 99 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhh-----------chhHH--hcCCEEEEeccccchH---
Confidence 57999999999999999998875431 1111 0000 01111 1347899999995411
Q ss_pred CCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhccccccc
Q 011578 324 ADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTEDSL 401 (482)
Q Consensus 324 ~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~~~~~ 401 (482)
..+...+-...+.|+.++++++++++.. .. |++++|+ ..++.+.+|+.+++..++++.+...
T Consensus 100 -------~~lf~l~N~~~e~g~~ilits~~~p~~l---~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~----- 163 (214)
T PRK06620 100 -------PALLHIFNIINEKQKYLLLTSSDKSRNF---TL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS----- 163 (214)
T ss_pred -------HHHHHHHHHHHhcCCEEEEEcCCCcccc---ch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-----
Confidence 1222333333366887777777666532 23 7899999 3379999999999999999887752
Q ss_pred cccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHH
Q 011578 402 LYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 474 (482)
Q Consensus 402 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al 474 (482)
+ ..++++++..++... .++.|.+.++++....... ...+.||...+++++
T Consensus 164 --~----l~l~~ev~~~L~~~~-------~~d~r~l~~~l~~l~~~~~----------~~~~~it~~~~~~~l 213 (214)
T PRK06620 164 --S----VTISRQIIDFLLVNL-------PREYSKIIEILENINYFAL----------ISKRKITISLVKEVL 213 (214)
T ss_pred --C----CCCCHHHHHHHHHHc-------cCCHHHHHHHHHHHHHHHH----------HcCCCCCHHHHHHHh
Confidence 2 356889999999876 5788888888887533210 112357777777665
No 255
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.44 E-value=5e-13 Score=141.06 Aligned_cols=106 Identities=29% Similarity=0.381 Sum_probs=95.6
Q ss_pred hHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHH
Q 011578 15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK 94 (482)
Q Consensus 15 t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~ 94 (482)
+.|+.|+..|+.+.++.||. .+.++|..+.. |+||||+||..|+.+++++|++ .|++++.+|..|.||||+|+.
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~-~Gadin~~d~~-G~TpLh~Aa~~g~~eiv~~LL~----~Gadvn~~d~~G~TpLh~A~~ 157 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLT-GGADPNCRDYD-GRTPLHIACANGHVQVVRVLLE----FGADPTLLDKDGKTPLELAEE 157 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCC-CCcHHHHHHHCCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHH
Confidence 35889999999999998885 57788988876 9999999999999999999999 588899999999999999999
Q ss_pred cCCHHHHHHHHhC-------CCCccccccCCCcceeeeh
Q 011578 95 NGCNEAAKLLLAH-------GAFIEAKANNGMTPLHLSV 126 (482)
Q Consensus 95 ~g~~~~v~~Ll~~-------ga~~~~~d~~g~tpLh~A~ 126 (482)
.|+.+++++|+++ |++++..+..|.+|+..+.
T Consensus 158 ~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 158 NGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS 196 (664)
T ss_pred CCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence 9999999999998 8888888888888876544
No 256
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.43 E-value=7.7e-13 Score=132.63 Aligned_cols=151 Identities=21% Similarity=0.286 Sum_probs=102.1
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc-------------
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV------------- 270 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~------------- 270 (482)
.+.++.|+..+++.+. +......+++|.||||+|||++++.++..+...
T Consensus 189 d~~~v~Gq~~~~~al~------------------laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s 250 (506)
T PRK09862 189 DLSDVIGQEQGKRGLE------------------ITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILS 250 (506)
T ss_pred CeEEEECcHHHHhhhh------------------eeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhh
Confidence 5667788877666543 223456789999999999999999998755211
Q ss_pred --CC------CCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhc
Q 011578 271 --GI------LPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 342 (482)
Q Consensus 271 --~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~ 342 (482)
+. ....||...+.+.-....+|.....-...+..|.++||||||++.+.+ .++..|++.|+
T Consensus 251 ~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~-----------~~~~~L~~~LE 319 (506)
T PRK09862 251 LVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFER-----------RTLDALREPIE 319 (506)
T ss_pred hhccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCH-----------HHHHHHHHHHH
Confidence 10 122344444443333345664433344678999999999999988776 55688888887
Q ss_pred CCc---------------EEEEEecCchhHHH----------------HHhcCccccCCCcceeeCCCCCHH
Q 011578 343 GGK---------------VVVIFAGYSEPMKR----------------VIASNEGFCRRVTKFFHFNDFNSE 383 (482)
Q Consensus 343 ~~~---------------~~vi~~~~~~~~~~----------------~~~~~~~l~~R~~~~i~~~~~~~~ 383 (482)
++. +.+|+|+++.+--. .-...+++++|||..+.++.++.+
T Consensus 320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 643 47777776654100 112367899999999999998755
No 257
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.43 E-value=2.3e-12 Score=130.72 Aligned_cols=175 Identities=16% Similarity=0.193 Sum_probs=116.6
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh--cCCcEEEEecccccccC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLIPM 321 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--a~~~vl~iDE~d~l~~~ 321 (482)
..++|||++|+|||.|+.++++.+.... ....++.++..++..+++........+.|.+ ....+|+|||++.+..+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~--~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gk 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLY--PGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDK 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhC--CCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCC
Confidence 3499999999999999999999886421 1235677777776655543321112222332 12489999999998754
Q ss_pred CCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc-hhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhcccc
Q 011578 322 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS-EPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTE 398 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~-~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~~ 398 (482)
.. ....+++.|-...+.++-+||.+... ..+.. .++.|.+|| ..++.+..|+.+.|..||+..+....
T Consensus 393 e~-----tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~---l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~- 463 (617)
T PRK14086 393 ES-----TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVT---LEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ- 463 (617)
T ss_pred HH-----HHHHHHHHHHHHHhcCCCEEEecCCChHhhhh---ccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcC-
Confidence 32 11233333333344455555555332 22322 378899999 67889999999999999999877542
Q ss_pred ccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 399 DSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
..++.+.+..++.+. ..|.|.|..++.+...
T Consensus 464 ----------l~l~~eVi~yLa~r~-------~rnvR~LegaL~rL~a 494 (617)
T PRK14086 464 ----------LNAPPEVLEFIASRI-------SRNIRELEGALIRVTA 494 (617)
T ss_pred ----------CCCCHHHHHHHHHhc-------cCCHHHHHHHHHHHHH
Confidence 456889999999876 4677888888776654
No 258
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.43 E-value=1.6e-13 Score=141.08 Aligned_cols=200 Identities=20% Similarity=0.239 Sum_probs=159.9
Q ss_pred cccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCccccc-CcCC
Q 011578 6 DRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA-QNMY 84 (482)
Q Consensus 6 ~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~~~~ 84 (482)
|.....+-.|+|-.||..|+-+.|..++ ..|.++..+|.. |.+||.+|+..||..+|+.|+. ..++++. .|+.
T Consensus 750 d~~Te~n~~t~LT~acaggh~e~vellv-~rganiehrdkk-gf~plImaatagh~tvV~~llk----~ha~veaQsdrt 823 (2131)
T KOG4369|consen 750 DPLTEPNIKTNLTSACAGGHREEVELLV-VRGANIEHRDKK-GFVPLIMAATAGHITVVQDLLK----AHADVEAQSDRT 823 (2131)
T ss_pred ccccCccccccccccccCccHHHHHHHH-Hhcccccccccc-cchhhhhhcccCchHHHHHHHh----hhhhhhhhcccc
Confidence 3445566789999999999999999877 557788888887 9999999999999999999998 4677765 4688
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccC--CCCCChhhhh
Q 011578 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD--NEGKTPLDHL 162 (482)
Q Consensus 85 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d--~~g~tpl~~~ 162 (482)
+.|+|.+||..|..++|++||..|++-..++....|||-+|. ..|+.+++..|+.+|+.+|.+. +.|-+|| .+
T Consensus 824 kdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~----Sggy~~iI~~llS~GseInSrtgSklgisPL-ml 898 (2131)
T KOG4369|consen 824 KDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLAR----SGGYTKIIHALLSSGSEINSRTGSKLGISPL-ML 898 (2131)
T ss_pred cCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhc----CcchHHHHHHHhhcccccccccccccCcchh-hh
Confidence 999999999999999999999999999999999999999999 9999999999999999988764 4788999 56
Q ss_pred hcCCCChHHHHHHHhhhHHHHHHhhHhhhhhhhhhHHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 011578 163 SNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGM 225 (482)
Q Consensus 163 a~~~~~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~G~~~~k~~l~~~~~~~ 225 (482)
+.-+++......|++.|.+.+.+-.-..... -.+.-.-|..++...|..+...+
T Consensus 899 atmngh~~at~~ll~~gsdiNaqIeTNrnTa---------ltla~fqgr~evv~lLLa~~anv 952 (2131)
T KOG4369|consen 899 ATMNGHQAATLSLLQPGSDINAQIETNRNTA---------LTLALFQGRPEVVFLLLAAQANV 952 (2131)
T ss_pred hhhccccHHHHHHhcccchhccccccccccc---------eeeccccCcchHHHHHHHHhhhh
Confidence 6667777788888888887766542211111 12233456676666666554333
No 259
>PRK09087 hypothetical protein; Validated
Probab=99.43 E-value=3.4e-12 Score=116.34 Aligned_cols=178 Identities=12% Similarity=0.079 Sum_probs=116.8
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 322 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~ 322 (482)
...++|+||+|+|||+|++++++... ...++...+.. +.+......+|+||+++.+...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~---------~~~i~~~~~~~-----------~~~~~~~~~~l~iDDi~~~~~~- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD---------ALLIHPNEIGS-----------DAANAAAEGPVLIEDIDAGGFD- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC---------CEEecHHHcch-----------HHHHhhhcCeEEEECCCCCCCC-
Confidence 34599999999999999999997532 12333222211 2223333468999999977321
Q ss_pred CCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhcccccc
Q 011578 323 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTEDS 400 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~~~~ 400 (482)
+ ..+...+-...+.++.+|+++++..+.... ..|.+++|| ...+++.+|+.+++.+|+++.++...
T Consensus 103 ~-------~~lf~l~n~~~~~g~~ilits~~~p~~~~~--~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~--- 170 (226)
T PRK09087 103 E-------TGLFHLINSVRQAGTSLLMTSRLWPSSWNV--KLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQ--- 170 (226)
T ss_pred H-------HHHHHHHHHHHhCCCeEEEECCCChHHhcc--ccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcC---
Confidence 1 133343434445577777777665554322 268899999 58999999999999999999987632
Q ss_pred ccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 401 LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
..++++.+..+++... ++.+.+..++.+..... ......||..-++++++.+.
T Consensus 171 --------~~l~~ev~~~La~~~~-------r~~~~l~~~l~~L~~~~----------~~~~~~it~~~~~~~l~~~~ 223 (226)
T PRK09087 171 --------LYVDPHVVYYLVSRME-------RSLFAAQTIVDRLDRLA----------LERKSRITRALAAEVLNEMG 223 (226)
T ss_pred --------CCCCHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHH----------HHhCCCCCHHHHHHHHHhhc
Confidence 4568899999998763 44555555544443221 01224688888888887653
No 260
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.42 E-value=3.3e-12 Score=128.10 Aligned_cols=180 Identities=11% Similarity=0.095 Sum_probs=118.6
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccch---hhHHHHHHhc-CCcEEEEeccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG---PKTRRRIKEA-EGGILFVDEAYRL 318 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~a-~~~vl~iDE~d~l 318 (482)
..+++||||+|+|||.|++++++.+.... ....++.+++.++...+...-. ..+.+..+.. ...+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~--~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNF--SDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhC--CCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccc
Confidence 35699999999999999999999886421 1235667777776655443211 1222222222 3369999999988
Q ss_pred ccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhcc
Q 011578 319 IPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQ 396 (482)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~ 396 (482)
..+.. ........+-..++.++.+|+.+..+... +-..++.+.+|| ...+.+.+|+.+++..|++..++..
T Consensus 219 ~~k~~-----~~e~lf~l~N~~~~~~k~iIltsd~~P~~--l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~ 291 (450)
T PRK14087 219 SYKEK-----TNEIFFTIFNNFIENDKQLFFSSDKSPEL--LNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQ 291 (450)
T ss_pred cCCHH-----HHHHHHHHHHHHHHcCCcEEEECCCCHHH--HhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhc
Confidence 64321 11123333333345566555554332222 212378899999 6788999999999999999998753
Q ss_pred ccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 397 TEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
|+ ...++++++..++... .++.|.+.+++.++...
T Consensus 292 -------gl--~~~l~~evl~~Ia~~~-------~gd~R~L~gaL~~l~~~ 326 (450)
T PRK14087 292 -------NI--KQEVTEEAINFISNYY-------SDDVRKIKGSVSRLNFW 326 (450)
T ss_pred -------CC--CCCCCHHHHHHHHHcc-------CCCHHHHHHHHHHHHHH
Confidence 22 1257889999999876 68899999999887643
No 261
>PRK05642 DNA replication initiation factor; Validated
Probab=99.42 E-value=5.6e-12 Score=115.92 Aligned_cols=168 Identities=10% Similarity=0.155 Sum_probs=112.9
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 322 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~ 322 (482)
...++|+||+|||||.|++++++++...+ ..++.++..++.... ..+.+.+. ..-+|+||+++.+..+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~----~~v~y~~~~~~~~~~-----~~~~~~~~--~~d~LiiDDi~~~~~~~ 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRG----EPAVYLPLAELLDRG-----PELLDNLE--QYELVCLDDLDVIAGKA 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCC----CcEEEeeHHHHHhhh-----HHHHHhhh--hCCEEEEechhhhcCCh
Confidence 35789999999999999999999876432 245566665554321 11222222 22589999999886532
Q ss_pred CCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhcccccc
Q 011578 323 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTEDS 400 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~~~~ 400 (482)
+ ......+.+-...+.++.++++++++.+... ...|.+++|| ...+.+.+|+.+++.++++......
T Consensus 114 ~-----~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~--~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~---- 182 (234)
T PRK05642 114 D-----WEEALFHLFNRLRDSGRRLLLAASKSPRELP--IKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRR---- 182 (234)
T ss_pred H-----HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcC--ccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc----
Confidence 2 1112333333334557777777765444321 2369999999 5788899999999999999665442
Q ss_pred ccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 401 LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
+ ..++++++..+++.. .+++|.+.++++....
T Consensus 183 ---~----~~l~~ev~~~L~~~~-------~~d~r~l~~~l~~l~~ 214 (234)
T PRK05642 183 ---G----LHLTDEVGHFILTRG-------TRSMSALFDLLERLDQ 214 (234)
T ss_pred ---C----CCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHH
Confidence 2 356789999999876 5778888888887643
No 262
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.41 E-value=5.6e-12 Score=116.50 Aligned_cols=112 Identities=19% Similarity=0.217 Sum_probs=74.9
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchh-------HHHHHhcCccccCCCcceeeCCC
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEP-------MKRVIASNEGFCRRVTKFFHFND 379 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~-------~~~~~~~~~~l~~R~~~~i~~~~ 379 (482)
|||||||++.|-- +...-|-+.|++ -..++|+||+.-- +....-.+..|++|+ .+|...+
T Consensus 293 GVLFIDEvHmLDI-----------E~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl-lII~t~p 360 (450)
T COG1224 293 GVLFIDEVHMLDI-----------ECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRL-LIISTRP 360 (450)
T ss_pred ceEEEechhhhhH-----------HHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhhe-eEEecCC
Confidence 8999999998865 445667777776 3456666653211 111111135678888 8999999
Q ss_pred CCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 380 FNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 380 ~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
++.+++++|++...+++. ..+++++++.++.-.. ...-|..-+++.-|...+
T Consensus 361 y~~~EireIi~iRa~ee~-----------i~l~~~Ale~L~~ig~------etSLRYa~qLL~pa~iiA 412 (450)
T COG1224 361 YSREEIREIIRIRAKEED-----------IELSDDALEYLTDIGE------ETSLRYAVQLLTPASIIA 412 (450)
T ss_pred CCHHHHHHHHHHhhhhhc-----------cccCHHHHHHHHhhch------hhhHHHHHHhccHHHHHH
Confidence 999999999999888753 5678899999988544 222344455555444443
No 263
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.41 E-value=1.5e-13 Score=95.26 Aligned_cols=54 Identities=50% Similarity=0.732 Sum_probs=46.0
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHh
Q 011578 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL 142 (482)
Q Consensus 85 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll 142 (482)
|.||||+||..|+.+++++|+++|++++.+|.+|+||||+|+ ..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~----~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAA----KNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHH----HTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HccCHHHHHHHC
Confidence 689999999999999999999999999999999999999999 889999999986
No 264
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.40 E-value=2.1e-13 Score=95.05 Aligned_cols=56 Identities=38% Similarity=0.643 Sum_probs=33.2
Q ss_pred HHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHH
Q 011578 32 LLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (482)
Q Consensus 32 ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A 92 (482)
||+.++.++|..+.. |.||||+||.+|+.++|++|++ .+++++.+|..|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~-G~T~LH~A~~~g~~~~v~~Ll~----~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKY-GNTPLHWAARYGHSEVVRLLLQ----NGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TT-S--HHHHHHHHT-HHHHHHHHH----CT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCC-CCcHHHHHHHcCcHHHHHHHHH----CcCCCCCCcCCCCCHHHhC
Confidence 455566888999987 9999999999999999999997 7899999999999999997
No 265
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.39 E-value=3.2e-11 Score=107.95 Aligned_cols=195 Identities=17% Similarity=0.241 Sum_probs=124.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
-.+++++|.+..|+.|.+-...+ +...+..++||+|+.|||||+++|++..++...|. .++++.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~F------------l~G~pannvLL~G~rGtGKSSlVkall~~y~~~GL----RlIev~ 87 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQF------------LQGLPANNVLLWGARGTGKSSLVKALLNEYADQGL----RLIEVS 87 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHH------------HcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCc----eEEEEC
Confidence 45788999999999998865554 23347789999999999999999999999987664 678887
Q ss_pred cccccccccccchhhHHHHHHhc-CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC------CcEEEEEecCch
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGYSE 355 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a-~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~------~~~~vi~~~~~~ 355 (482)
..++.. -..+-+.+... ..=|||+|+.. +.. .+ .--..|...||+ .++++.+|++..
T Consensus 88 k~~L~~------l~~l~~~l~~~~~kFIlf~DDLs-Fe~------~d---~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 88 KEDLGD------LPELLDLLRDRPYKFILFCDDLS-FEE------GD---TEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred HHHhcc------HHHHHHHHhcCCCCEEEEecCCC-CCC------Cc---HHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 666532 12233333332 34699999753 111 11 112556666665 345555554322
Q ss_pred hH-HHH-Hh----------------cCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHH
Q 011578 356 PM-KRV-IA----------------SNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 417 (482)
Q Consensus 356 ~~-~~~-~~----------------~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 417 (482)
-+ .+. .+ ---+|.+||...+.|.+|+.++-.+|++.++++. |+ .++.+.+.
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~-------g~----~~~~e~l~ 220 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY-------GL----ELDEEELR 220 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc-------CC----CCCHHHHH
Confidence 11 111 01 0134677999999999999999999999999764 33 33445555
Q ss_pred HHHHHHhhHhhccccCcchhHHHHH
Q 011578 418 ALIEKETTEKQRREMNGGLVDPMLV 442 (482)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~l~~~~~ 442 (482)
..+-.+. .....-+||..++-+.
T Consensus 221 ~~Al~wa--~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 221 QEALQWA--LRRGGRSGRTARQFID 243 (249)
T ss_pred HHHHHHH--HHcCCCCHHHHHHHHH
Confidence 5554432 1222345666555543
No 266
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=8.2e-12 Score=120.89 Aligned_cols=158 Identities=18% Similarity=0.218 Sum_probs=101.3
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC-----
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD----- 276 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~----- 276 (482)
...+++++|++.+++.+...+.. ...+..+||+||+|+|||++|+.+|+.+.........
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~---------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~ 83 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE---------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA 83 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc---------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC
Confidence 45678899999999999886321 1234459999999999999999999988652100000
Q ss_pred -C-----------------eEEeecc-cccc-cc-cccchhhHHHH---HHhc----CCcEEEEecccccccCCCCCCCh
Q 011578 277 -R-----------------VTEVQRT-DLVG-EF-VGHTGPKTRRR---IKEA----EGGILFVDEAYRLIPMQKADDKD 328 (482)
Q Consensus 277 -~-----------------~~~~~~~-~~~~-~~-~g~~~~~~~~~---~~~a----~~~vl~iDE~d~l~~~~~~~~~~ 328 (482)
+ ++.+... +... +. -+-+...++++ |... ...|++|||+|.+..
T Consensus 84 ~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~-------- 155 (351)
T PRK09112 84 DPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR-------- 155 (351)
T ss_pred CCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH--------
Confidence 0 1111100 0000 00 00011223332 3321 237999999999987
Q ss_pred hHHHHHHHHHhhhcC---CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHH
Q 011578 329 YGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIK 392 (482)
Q Consensus 329 ~~~~~~~~ll~~l~~---~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 392 (482)
.+.|.||..+++ +.+++++++.+..+ .|.+++|+ ..++|++|+.++...+++..
T Consensus 156 ---~aanaLLk~LEEpp~~~~fiLit~~~~~l------lptIrSRc-~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 156 ---NAANAILKTLEEPPARALFILISHSSGRL------LPTIRSRC-QPISLKPLDDDELKKALSHL 212 (351)
T ss_pred ---HHHHHHHHHHhcCCCCceEEEEECChhhc------cHHHHhhc-cEEEecCCCHHHHHHHHHHh
Confidence 444889999987 33445555344322 68899999 89999999999999999873
No 267
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.38 E-value=8.5e-13 Score=117.33 Aligned_cols=122 Identities=21% Similarity=0.215 Sum_probs=106.4
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccc-cccCCCcceeeeh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA-KANNGMTPLHLSV 126 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~tpLh~A~ 126 (482)
-..||.-+...|..+-...||. ..-++|.+|..|.|||..|+..|+.++|++|++.|+|+|. ++..+.||||+|+
T Consensus 12 ~~~~Lle~i~Kndt~~a~~LLs----~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAA 87 (396)
T KOG1710|consen 12 PKSPLLEAIDKNDTEAALALLS----TVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAA 87 (396)
T ss_pred hhhHHHHHHccCcHHHHHHHHH----HhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHH
Confidence 4589999999999999999997 3455899999999999999999999999999999999996 5667899999999
Q ss_pred hhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhh
Q 011578 127 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178 (482)
Q Consensus 127 ~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~ 178 (482)
..|+.+++++|++.|+.+...|.-|+|+-.+||.-+++ +++.++..+
T Consensus 88 ----LSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H-~CV~iINN~ 134 (396)
T KOG1710|consen 88 ----LSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHH-ECVAIINNH 134 (396)
T ss_pred ----HcCCchHHHHHHhccCccccccchhhhHHHHHHHhcch-HHHHHHhcc
Confidence 88999999999999999999999999999777766555 445454433
No 268
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.38 E-value=1.9e-12 Score=127.33 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=94.8
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc-c
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT-D 285 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~-~ 285 (482)
.++|.+++++.+... .....++||.||||||||++|++|+..+...+ +|....+. .
T Consensus 21 ~i~gre~vI~lll~a------------------alag~hVLL~GpPGTGKT~LAraLa~~~~~~~-----~F~~~~~~ft 77 (498)
T PRK13531 21 GLYERSHAIRLCLLA------------------ALSGESVFLLGPPGIAKSLIARRLKFAFQNAR-----AFEYLMTRFS 77 (498)
T ss_pred hccCcHHHHHHHHHH------------------HccCCCEEEECCCChhHHHHHHHHHHHhcccC-----cceeeeeeec
Confidence 478999888877754 23568999999999999999999999775322 23222221 1
Q ss_pred ccccccccc-hhhH--HHHHHhc------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-----------
Q 011578 286 LVGEFVGHT-GPKT--RRRIKEA------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK----------- 345 (482)
Q Consensus 286 ~~~~~~g~~-~~~~--~~~~~~a------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----------- 345 (482)
.....+|.. .... ...|... ...|||+|||.++.++.| +.|++.|+++.
T Consensus 78 tp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~~Q-----------saLLeam~Er~~t~g~~~~~lp 146 (498)
T PRK13531 78 TPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPAIL-----------NTLLTAINERRFRNGAHEEKIP 146 (498)
T ss_pred CcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccCCHHHH-----------HHHHHHHHhCeEecCCeEEeCC
Confidence 123444432 1111 1122211 124899999998888544 99999996533
Q ss_pred -EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCC-HHHHHHHHHHH
Q 011578 346 -VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEELAKILHIK 392 (482)
Q Consensus 346 -~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~~~~il~~~ 392 (482)
.++++||+ +...--...+++.+||-..+.+|+|+ .++-.+|+...
T Consensus 147 ~rfiv~ATN--~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 147 MRLLVTASN--ELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcEEEEECC--CCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 35555543 22110011357899998899999997 46667788764
No 269
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.38 E-value=1.5e-12 Score=132.29 Aligned_cols=183 Identities=20% Similarity=0.238 Sum_probs=129.3
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-----ccccchh-------hHHHHHHhcCCc
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----FVGHTGP-------KTRRRIKEAEGG 308 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~-------~~~~~~~~a~~~ 308 (482)
.....++++|++||||+++|++++... .....+|+.++++.+... .+|+... .....|..+.+|
T Consensus 160 ~~~~~vli~ge~g~gk~~~a~~ih~~s----~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (441)
T PRK10365 160 PSEATVLIHGDSGTGKELVARAIHASS----ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 (441)
T ss_pred CCCCeEEEEecCCCCHHHHHHHHHHcC----CCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCC
Confidence 345679999999999999999999743 344569999999865432 3343211 112346778899
Q ss_pred EEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-------------EEEEEecCchhHHHHHh--cCccccCCC-c
Q 011578 309 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-------------VVVIFAGYSEPMKRVIA--SNEGFCRRV-T 372 (482)
Q Consensus 309 vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------------~~vi~~~~~~~~~~~~~--~~~~l~~R~-~ 372 (482)
+||||||+.|.+..| ..|+..++.+. +.+|++|+.+....+.. -.+.|..|+ .
T Consensus 236 tl~ldei~~l~~~~q-----------~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~ 304 (441)
T PRK10365 236 TLFLDEIGDISPMMQ-----------VRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 (441)
T ss_pred EEEEeccccCCHHHH-----------HHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhcc
Confidence 999999999998555 77888887643 46788877766543311 112233344 4
Q ss_pred ceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 373 KFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 373 ~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
..|.+|++.. +++..+++.++.+.... ++ +....++++++..+..+.| +||.|++++++++++...
T Consensus 305 ~~i~~ppLreR~~Di~~l~~~~l~~~~~~---~~-~~~~~~~~~a~~~L~~~~w------pgN~reL~~~~~~~~~~~ 372 (441)
T PRK10365 305 VAIEVPSLRQRREDIPLLAGHFLQRFAER---NR-KAVKGFTPQAMDLLIHYDW------PGNIRELENAVERAVVLL 372 (441)
T ss_pred ceecCCChhhcchhHHHHHHHHHHHHHHH---hC-CCCCCcCHHHHHHHHhCCC------CCHHHHHHHHHHHHHHhC
Confidence 5666777764 68888999998875431 11 1224589999999999999 999999999999988753
No 270
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.35 E-value=2.2e-12 Score=121.44 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=92.4
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc--ccccchhhH----------HHHHHh--cCCc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE--FVGHTGPKT----------RRRIKE--AEGG 308 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~----------~~~~~~--a~~~ 308 (482)
..+++|.||||||||++|+.+|+.++. +++.++.+..... ++|.....+ ...+.. ..++
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~-------~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~ 136 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNW-------PCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNV 136 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCC-------CeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCe
Confidence 468999999999999999999999987 7777776543332 555422111 112222 2467
Q ss_pred EEEEecccccccCCCCCCChhHHHHHHHHHhh-----h-cC-------CcEEEEEecCchh-------HHHHHhcCcccc
Q 011578 309 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSV-----M-DG-------GKVVVIFAGYSEP-------MKRVIASNEGFC 368 (482)
Q Consensus 309 vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~-----l-~~-------~~~~vi~~~~~~~-------~~~~~~~~~~l~ 368 (482)
+||+||+|...++.+ .+++.+|+. + +. ..+.+|+|.++.. +.-....+++++
T Consensus 137 illlDEin~a~p~~~--------~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~l 208 (327)
T TIGR01650 137 ALCFDEYDAGRPDVM--------FVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQM 208 (327)
T ss_pred EEEechhhccCHHHH--------HHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHH
Confidence 899999999977444 444445542 1 11 2356777766543 222333478999
Q ss_pred CCCcceeeCCCCCHHHHHHHHHHHH
Q 011578 369 RRVTKFFHFNDFNSEELAKILHIKM 393 (482)
Q Consensus 369 ~R~~~~i~~~~~~~~~~~~il~~~l 393 (482)
+||-.++.++.|+.++-.+|+....
T Consensus 209 DRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 209 DRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred hheeeEeeCCCCCHHHHHHHHHhhc
Confidence 9997788999999999999997654
No 271
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=1.4e-11 Score=117.63 Aligned_cols=157 Identities=17% Similarity=0.206 Sum_probs=103.9
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCC----------C
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI----------L 273 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~----------~ 273 (482)
.|++++|++.+++.+.+.+.. ..-++.+||+||+|+||+++|+++|+.+..... .
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~---------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~ 66 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ---------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEE 66 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh---------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhccccc
Confidence 478999999999999987421 123578999999999999999999998864321 0
Q ss_pred CC-CCeEEeeccccc-cc--------ccc-------c-chhhHHHHHHh-------cCCcEEEEecccccccCCCCCCCh
Q 011578 274 PT-DRVTEVQRTDLV-GE--------FVG-------H-TGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKD 328 (482)
Q Consensus 274 ~~-~~~~~~~~~~~~-~~--------~~g-------~-~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~ 328 (482)
.+ ..+..+.+.... ++ ..| . .-..++++.+. +...|++||++|.+...
T Consensus 67 ~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~------- 139 (314)
T PRK07399 67 GNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA------- 139 (314)
T ss_pred CCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHH-------
Confidence 01 111222221000 10 011 0 01134444322 23489999999999874
Q ss_pred hHHHHHHHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHH
Q 011578 329 YGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM 393 (482)
Q Consensus 329 ~~~~~~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 393 (482)
+.|.||..|++ ..++++.++++ +.+ .|++++|+ ..++|++++.++..+++....
T Consensus 140 ----aaNaLLK~LEEPp~~~fILi~~~~---~~L---l~TI~SRc-q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 140 ----AANALLKTLEEPGNGTLILIAPSP---ESL---LPTIVSRC-QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred ----HHHHHHHHHhCCCCCeEEEEECCh---HhC---cHHHHhhc-eEEecCCCCHHHHHHHHHHhh
Confidence 44999999986 33444444333 333 78899999 999999999999999998754
No 272
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.7e-11 Score=128.47 Aligned_cols=178 Identities=18% Similarity=0.352 Sum_probs=128.4
Q ss_pred HHHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC
Q 011578 198 MDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 276 (482)
Q Consensus 198 ~~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~ 276 (482)
+..+.+.+. .++||+++...|-+.+... ..+..-. .+...++|.||.|+|||-+|++||..++. ...
T Consensus 553 l~~L~~~L~~~V~gQ~eAv~aIa~AI~~s-------r~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fg----se~ 620 (898)
T KOG1051|consen 553 LKKLEERLHERVIGQDEAVAAIAAAIRRS-------RAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFG----SEE 620 (898)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHhh-------hcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcC----Ccc
Confidence 334444444 4899999988888764333 2233222 46778999999999999999999997742 344
Q ss_pred CeEEeeccc------cc---ccccccchh-hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-
Q 011578 277 RVTEVQRTD------LV---GEFVGHTGP-KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK- 345 (482)
Q Consensus 277 ~~~~~~~~~------~~---~~~~g~~~~-~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~- 345 (482)
.++.++.++ +. ..|+|.++. .+.+.++..+.+||||||||+.++ .+++.|++.+|.|+
T Consensus 621 ~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~-----------~v~n~llq~lD~Grl 689 (898)
T KOG1051|consen 621 NFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHP-----------DVLNILLQLLDRGRL 689 (898)
T ss_pred ceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCH-----------HHHHHHHHHHhcCcc
Confidence 678887773 32 348887654 788889888899999999999998 67799999998743
Q ss_pred ------------EEEEEecCchhH-----------------------------HHHHh------cCccccCCCcceeeCC
Q 011578 346 ------------VVVIFAGYSEPM-----------------------------KRVIA------SNEGFCRRVTKFFHFN 378 (482)
Q Consensus 346 ------------~~vi~~~~~~~~-----------------------------~~~~~------~~~~l~~R~~~~i~~~ 378 (482)
.+||+|.+...- ..... -.|.+.+|.+..+.|.
T Consensus 690 tDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~ 769 (898)
T KOG1051|consen 690 TDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNL 769 (898)
T ss_pred ccCCCcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeec
Confidence 477777531000 00111 1266777899999999
Q ss_pred CCCHHHHHHHHHHHHhcccc
Q 011578 379 DFNSEELAKILHIKMNNQTE 398 (482)
Q Consensus 379 ~~~~~~~~~il~~~l~~~~~ 398 (482)
+.+.++..+|....+.+..+
T Consensus 770 ~l~~~~~~~i~~~~~~e~~~ 789 (898)
T KOG1051|consen 770 PLDRDELIEIVNKQLTEIEK 789 (898)
T ss_pred ccchhhHhhhhhhHHHHHHH
Confidence 99999999999888876643
No 273
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=1.5e-11 Score=119.65 Aligned_cols=157 Identities=15% Similarity=0.192 Sum_probs=102.9
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC-----
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD----- 276 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~----- 276 (482)
...+++|+|++.+++.+.+.+.. ..-+..+||+||+|+||+++|.++|+.+.........
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~---------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~ 79 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS---------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP 79 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc
Confidence 34678899999999999876321 1234459999999999999999999999643211110
Q ss_pred ----------------------CeEEeecc--cccc---cccccchhhHHHHHHh-------cCCcEEEEecccccccCC
Q 011578 277 ----------------------RVTEVQRT--DLVG---EFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQ 322 (482)
Q Consensus 277 ----------------------~~~~~~~~--~~~~---~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~ 322 (482)
.+..+.+. +-.+ ..+ ....++++.+. ....|++|||+|.+..
T Consensus 80 ~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I--~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~-- 155 (365)
T PRK07471 80 PTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVI--TVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA-- 155 (365)
T ss_pred cccccCCCCChHHHHHHccCCCCeEEEecccccccccccccc--cHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH--
Confidence 11112110 0000 000 11234444332 2337999999999987
Q ss_pred CCCCChhHHHHHHHHHhhhcC--Cc-EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHH
Q 011578 323 KADDKDYGIEALEEIMSVMDG--GK-VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM 393 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~~--~~-~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 393 (482)
...|.|+..+++ +. ++++++..+... .|.+++|+ ..+.|++|+.++..+++....
T Consensus 156 ---------~aanaLLK~LEepp~~~~~IL~t~~~~~l------lpti~SRc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 156 ---------NAANALLKVLEEPPARSLFLLVSHAPARL------LPTIRSRC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred ---------HHHHHHHHHHhcCCCCeEEEEEECCchhc------hHHhhccc-eEEECCCCCHHHHHHHHHHhc
Confidence 455899999987 33 444444344332 57889998 899999999999999998753
No 274
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.33 E-value=1.4e-11 Score=126.92 Aligned_cols=212 Identities=13% Similarity=0.103 Sum_probs=123.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..+++++|++...+.++.++.... .+..+..-++|+||||||||++++++|+.++.....-..+.-...
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~-----------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~ 149 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQV-----------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDF 149 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcc-----------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcc
Confidence 567889999999888888754332 111222348999999999999999999988642110000000000
Q ss_pred ccc------ccccccc---cchhhHHHHHHhc-------------CCcEEEEecccccccCCCCCCChhHHHHHHHHHh-
Q 011578 283 RTD------LVGEFVG---HTGPKTRRRIKEA-------------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS- 339 (482)
Q Consensus 283 ~~~------~~~~~~g---~~~~~~~~~~~~a-------------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~- 339 (482)
.+. .....++ .......+.+..+ ...||||||++.+..... .++..++.
T Consensus 150 ~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~--------~~lq~lLr~ 221 (637)
T TIGR00602 150 QKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDT--------RALHEILRW 221 (637)
T ss_pred cccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhH--------HHHHHHHHH
Confidence 000 0000011 1122233333222 236999999998764221 34455555
Q ss_pred -hhcCCcEEEEEecCchhH------HHHHh----cCccccC--CCcceeeCCCCCHHHHHHHHHHHHhcccccccccccc
Q 011578 340 -VMDGGKVVVIFAGYSEPM------KRVIA----SNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK 406 (482)
Q Consensus 340 -~l~~~~~~vi~~~~~~~~------~~~~~----~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~ 406 (482)
..+.+.+.+|++++.++. ...+. ..|++++ |. .+|.|+++++.++.+.|+..+..+... ..
T Consensus 222 ~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~-----~~ 295 (637)
T TIGR00602 222 KYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKK-----NG 295 (637)
T ss_pred HhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhc-----cc
Confidence 345666666666553322 11111 1367765 44 579999999999999999998875321 00
Q ss_pred ccCcc-cHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 407 LHSSC-SMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 407 ~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
....+ +.+++..++... .|+.|..-+.++-++.
T Consensus 296 ~~~~~p~~~~l~~I~~~s-------~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 296 EKIKVPKKTSVELLCQGC-------SGDIRSAINSLQFSSS 329 (637)
T ss_pred cccccCCHHHHHHHHHhC-------CChHHHHHHHHHHHHh
Confidence 01112 467888887744 5777777788887654
No 275
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.33 E-value=4.8e-11 Score=112.95 Aligned_cols=203 Identities=19% Similarity=0.201 Sum_probs=124.1
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEE--eecccc---cccccccc-----h----hhHHHHH----Hh
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE--VQRTDL---VGEFVGHT-----G----PKTRRRI----KE 304 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~--~~~~~~---~~~~~g~~-----~----~~~~~~~----~~ 304 (482)
...++++||+|+|||++++.+++.+...... ....+. .+..++ +....|.. . ..+.+.+ ..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~-~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVV-AAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeE-EeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 3458899999999999999999877521110 000000 111111 11112211 1 1112212 12
Q ss_pred cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhc-C-CcEEEEEecCchhHHHHHhc--CccccCCCcceeeCCCC
Q 011578 305 AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD-G-GKVVVIFAGYSEPMKRVIAS--NEGFCRRVTKFFHFNDF 380 (482)
Q Consensus 305 a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~-~-~~~~vi~~~~~~~~~~~~~~--~~~l~~R~~~~i~~~~~ 380 (482)
.+..||+|||++.+.+.. .+.+..|..... . ..+.|++++.+.... .+.. ...+.+|+...++++++
T Consensus 122 ~~~~vliiDe~~~l~~~~--------~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~-~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 122 GKRALLVVDEAQNLTPEL--------LEELRMLSNFQTDNAKLLQIFLVGQPEFRE-TLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred CCCeEEEEECcccCCHHH--------HHHHHHHhCcccCCCCeEEEEEcCCHHHHH-HHcCchhHHHHhheeeeeeCCCC
Confidence 344799999999886421 233333433322 2 234456666555333 2221 23467788889999999
Q ss_pred CHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChh
Q 011578 381 NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTD 460 (482)
Q Consensus 381 ~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~ 460 (482)
+.++..+++...+.... ..-...++++++..+.+.. .|+.+.+..++..+...+..+
T Consensus 193 ~~~e~~~~l~~~l~~~g-------~~~~~~~~~~~~~~i~~~s-------~G~p~~i~~l~~~~~~~a~~~--------- 249 (269)
T TIGR03015 193 DREETREYIEHRLERAG-------NRDAPVFSEGAFDAIHRFS-------RGIPRLINILCDRLLLSAFLE--------- 249 (269)
T ss_pred CHHHHHHHHHHHHHHcC-------CCCCCCcCHHHHHHHHHHc-------CCcccHHHHHHHHHHHHHHHc---------
Confidence 99999999998887542 2223457889998888865 678889999988887775222
Q ss_pred hhhcccHHHHHHHHHHHH
Q 011578 461 ELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 461 ~~~~i~~~d~~~al~~~~ 478 (482)
....|+.+++..++..++
T Consensus 250 ~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 250 EKREIGGEEVREVIAEID 267 (269)
T ss_pred CCCCCCHHHHHHHHHHhh
Confidence 235799999999998864
No 276
>PRK04132 replication factor C small subunit; Provisional
Probab=99.32 E-value=3.1e-11 Score=127.38 Aligned_cols=160 Identities=22% Similarity=0.206 Sum_probs=117.0
Q ss_pred CceeEec--CCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh----c-----CCcEEEE
Q 011578 244 PHMAFLG--NPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE----A-----EGGILFV 312 (482)
Q Consensus 244 ~~~ll~G--ppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----a-----~~~vl~i 312 (482)
.+-+..| |++.||||+|++||+.++.. .....++++++++..+. ..++++++. . +..|+||
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~--~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGE--NWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcc--cccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 3455668 99999999999999988532 12347999999985321 234444322 1 2269999
Q ss_pred ecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHH
Q 011578 313 DEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILH 390 (482)
Q Consensus 313 DE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~ 390 (482)
||+|.|....| +.|+..|+. +.+.+|++++. ...+ .|++++|+ ..+.|++|+.+++...++
T Consensus 637 DEaD~Lt~~AQ-----------nALLk~lEep~~~~~FILi~N~--~~kI---i~tIrSRC-~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 637 DEADALTQDAQ-----------QALRRTMEMFSSNVRFILSCNY--SSKI---IEPIQSRC-AIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred ECcccCCHHHH-----------HHHHHHhhCCCCCeEEEEEeCC--hhhC---chHHhhhc-eEEeCCCCCHHHHHHHHH
Confidence 99999987555 899999985 55556665332 2233 68899998 999999999999999999
Q ss_pred HHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 391 IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 391 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
..+.++. ..++++++..++... .|+.|...+.++.+..
T Consensus 700 ~I~~~Eg-----------i~i~~e~L~~Ia~~s-------~GDlR~AIn~Lq~~~~ 737 (846)
T PRK04132 700 YIAENEG-----------LELTEEGLQAILYIA-------EGDMRRAINILQAAAA 737 (846)
T ss_pred HHHHhcC-----------CCCCHHHHHHHHHHc-------CCCHHHHHHHHHHHHH
Confidence 8877542 345778888888765 5778888888887654
No 277
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=4.2e-11 Score=115.53 Aligned_cols=153 Identities=14% Similarity=0.280 Sum_probs=103.0
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC-CCCeEEee
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-TDRVTEVQ 282 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-~~~~~~~~ 282 (482)
.|++++|++.+++.+...+.. ...+..+||+||+|+|||++|+.+|+.+....... ...+..+.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~---------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~ 66 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK---------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFK 66 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc---------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEec
Confidence 478999999999998876321 12344569999999999999999999885422111 11233333
Q ss_pred cccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi~~~ 352 (482)
+. .++.+ +...++++.+. +...|++||++|.+.. .+.|.|+..+++ +.++|+.|+
T Consensus 67 ~~--~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~-----------~a~naLLK~LEepp~~t~~il~~~ 131 (313)
T PRK05564 67 PI--NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE-----------QAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred cc--cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcCH-----------HHHHHHHHHhcCCCCCeEEEEEeC
Confidence 21 11111 12235555442 2347999999999987 344999999987 445555553
Q ss_pred CchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHH
Q 011578 353 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM 393 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 393 (482)
++ +.+ .|++++|+ ..++|++|+.++....++..+
T Consensus 132 ~~---~~l---l~TI~SRc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 132 NL---EQI---LDTIKSRC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred Ch---HhC---cHHHHhhc-eeeeCCCcCHHHHHHHHHHHh
Confidence 33 233 78899999 899999999999988776543
No 278
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.31 E-value=2.2e-11 Score=125.77 Aligned_cols=128 Identities=16% Similarity=0.235 Sum_probs=82.9
Q ss_pred HHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-----------------------cEEEEEecCchhH
Q 011578 301 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSEPM 357 (482)
Q Consensus 301 ~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-----------------------~~~vi~~~~~~~~ 357 (482)
.|.+|.+|+|||||++.|.+..| ..|++.|+.+ ++.+|++++++..
T Consensus 221 ~L~kAnGGtL~LDei~~L~~~~q-----------~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll 289 (637)
T PRK13765 221 AIHKAHKGVLFIDEINTLDLESQ-----------QSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDAL 289 (637)
T ss_pred ceeECCCcEEEEeChHhCCHHHH-----------HHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHH
Confidence 45577889999999999966433 6677766432 3478888877655
Q ss_pred HHHHhcCccccCCCc---ceeeCCCC---CHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 358 KRVIASNEGFCRRVT---KFFHFNDF---NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 358 ~~~~~~~~~l~~R~~---~~i~~~~~---~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
..+ +|.|++||. ..+.|..- +++.+..+++..-+...+ ....+.++.++++++.+.+++....+.
T Consensus 290 ~~~---dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~------~G~l~~f~~eAVa~LI~~~~R~ag~r~ 360 (637)
T PRK13765 290 ENM---HPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKR------DGKIPHFDRDAVEEIIREAKRRAGRKG 360 (637)
T ss_pred Hhh---hHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhh------ccCCCCCCHHHHHHHHHHHHHHhCCcc
Confidence 544 899999985 55666532 245566666543333211 012347899999999998875433222
Q ss_pred ---cCcchhHHHHHHHHHHh
Q 011578 432 ---MNGGLVDPMLVNARENL 448 (482)
Q Consensus 432 ---~~~~~l~~~~~~a~~~~ 448 (482)
..-+++.+++..|...+
T Consensus 361 ~lsl~~~~l~~l~r~a~~~a 380 (637)
T PRK13765 361 HLTLKLRDLGGLVRVAGDIA 380 (637)
T ss_pred ccccCHHHHHHHHHHHHHHH
Confidence 33567778877776544
No 279
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.1e-11 Score=127.37 Aligned_cols=208 Identities=25% Similarity=0.324 Sum_probs=155.5
Q ss_pred CCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcC---CcEEEEec
Q 011578 238 VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDE 314 (482)
Q Consensus 238 ~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE 314 (482)
.+..++.+++++||||||||+++++++.. . . .+..++.+...+++.|+++...+.+|..+. ++++|+||
T Consensus 13 ~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~ 84 (494)
T COG0464 13 LGIEPPKGVLLHGPPGTGKTLLARALANE-G------A-EFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDE 84 (494)
T ss_pred hCCCCCCCceeeCCCCCchhHHHHHHHhc-c------C-cccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeech
Confidence 44568899999999999999999999997 2 1 337788889999999999999999998764 38999999
Q ss_pred ccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEEEecCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHH
Q 011578 315 AYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKIL 389 (482)
Q Consensus 315 ~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il 389 (482)
+|.+.+.+..........++.+++..+++ +.++++..++..... +|++++ ||+..+.++.++...+.+|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 85 IDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDGL-----DPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred hhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCcccc-----ChhHhCccccceeeecCCCCHHHHHHHH
Confidence 99999998875566778899999999986 335555543322221 555544 99999999999999999999
Q ss_pred HHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHH
Q 011578 390 HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLED 469 (482)
Q Consensus 390 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d 469 (482)
........ .....+...++..+.++ .++++..++..+......|.. ........++.+|
T Consensus 160 ~~~~~~~~---------~~~~~~~~~~a~~~~~~---------~~~~~~~l~~~~~~~~~~r~~---~~~~~~~~~~~~~ 218 (494)
T COG0464 160 QIHTRLMF---------LGPPGTGKTLAARTVGK---------SGADLGALAKEAALRELRRAI---DLVGEYIGVTEDD 218 (494)
T ss_pred HHHHhcCC---------CcccccHHHHHHhcCCc---------cHHHHHHHHHHHHHHHHHhhh---ccCcccccccHHH
Confidence 88766543 22244555555555543 467778888777777666642 1112345789999
Q ss_pred HHHHHHHHHh
Q 011578 470 LEAGLKLLLR 479 (482)
Q Consensus 470 ~~~al~~~~~ 479 (482)
+.++++.+.|
T Consensus 219 ~~~~l~~~~~ 228 (494)
T COG0464 219 FEEALKKVLP 228 (494)
T ss_pred HHHHHHhcCc
Confidence 9999998876
No 280
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.30 E-value=1.7e-11 Score=111.92 Aligned_cols=157 Identities=16% Similarity=0.177 Sum_probs=107.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..+.++++++++...+.++ .+....+|.|||||||||||+...+.|..+... ...+..+.+++
T Consensus 38 ~~l~dv~~~~ei~st~~~~----------------~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~-~~~~~m~leln 100 (360)
T KOG0990|consen 38 PFLGIVIKQEPIWSTENRY----------------SGMPGLPHLLFYGPPGTGKTSTILANARDFYSP-HPTTSMLLELN 100 (360)
T ss_pred chhhhHhcCCchhhHHHHh----------------ccCCCCCcccccCCCCCCCCCchhhhhhhhcCC-CCchhHHHHhh
Confidence 3456778888887777776 223345599999999999999999999988753 22222345666
Q ss_pred cccccccccccchhhHHHHHHhc----------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEE
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA----------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVI 349 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a----------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi 349 (482)
+++-.+--+-. .-.+.|..+ .-..+++||+|.+....| ++|-+.++. +.-+.+
T Consensus 101 aSd~rgid~vr---~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ-----------nALRRviek~t~n~rF~i 166 (360)
T KOG0990|consen 101 ASDDRGIDPVR---QQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ-----------NALRRVIEKYTANTRFAT 166 (360)
T ss_pred ccCccCCcchH---HHHHHHHhhccceeccccCceeEEEecchhHhhHHHH-----------HHHHHHHHHhccceEEEE
Confidence 66544332211 111223222 237899999999988666 666665554 444445
Q ss_pred EecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 350 FAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
.+++.+.. .|++++|| ..++|.+.+.++..+.+..++....
T Consensus 167 i~n~~~ki------~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~ 207 (360)
T KOG0990|consen 167 ISNPPQKI------HPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQ 207 (360)
T ss_pred eccChhhc------Cchhhccc-ccCCCCCCChhhhhhHHHHHHhcch
Confidence 55555443 89999999 8999999999999999999887764
No 281
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.30 E-value=3.9e-11 Score=107.28 Aligned_cols=171 Identities=20% Similarity=0.311 Sum_probs=114.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--------- 273 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~--------- 273 (482)
+.++.+.+.++....++... .....+|++||||+|+||.|.+.++-++++..|.-
T Consensus 10 ksl~~l~~~~e~~~~Lksl~----------------~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~ 73 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLS----------------STGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTF 73 (351)
T ss_pred chhhhcccHHHHHHHHHHhc----------------ccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEE
Confidence 34556777777777777641 12345799999999999999999999999643321
Q ss_pred --CC-----------CCeEEeecccccccccccch-hhHHHHHHhc------------CCcEEEEecccccccCCCCCCC
Q 011578 274 --PT-----------DRVTEVQRTDLVGEFVGHTG-PKTRRRIKEA------------EGGILFVDEAYRLIPMQKADDK 327 (482)
Q Consensus 274 --~~-----------~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~a------------~~~vl~iDE~d~l~~~~~~~~~ 327 (482)
.+ ..-+++++|+ .|--. ..+.+++++- ...|++|-|+|.|....|
T Consensus 74 ~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ---- 144 (351)
T KOG2035|consen 74 TTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQ---- 144 (351)
T ss_pred ecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHH----
Confidence 11 1122333332 22211 1233333221 128999999999998666
Q ss_pred hhHHHHHHHHHhhhcC---CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhcccccccccc
Q 011578 328 DYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYG 404 (482)
Q Consensus 328 ~~~~~~~~~ll~~l~~---~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~ 404 (482)
.+|-.-|+. ...+|+.++...++ -|++++|+ ..+++|.|+.+|+..++...++++.
T Consensus 145 -------~aLRRTMEkYs~~~RlIl~cns~Sri------IepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~------- 203 (351)
T KOG2035|consen 145 -------HALRRTMEKYSSNCRLILVCNSTSRI------IEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEG------- 203 (351)
T ss_pred -------HHHHHHHHHHhcCceEEEEecCcccc------hhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhc-------
Confidence 556666654 55666667666655 57788898 8999999999999999999999874
Q ss_pred ccccCcccHHHHHHHHHHH
Q 011578 405 FKLHSSCSMDAIAALIEKE 423 (482)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~ 423 (482)
+.+ ..+.+.++++..
T Consensus 204 l~l----p~~~l~rIa~kS 218 (351)
T KOG2035|consen 204 LQL----PKELLKRIAEKS 218 (351)
T ss_pred ccC----cHHHHHHHHHHh
Confidence 333 356777777765
No 282
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.30 E-value=9.3e-12 Score=128.93 Aligned_cols=207 Identities=18% Similarity=0.146 Sum_probs=126.8
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccch--------h--hHHHHHHhcCCcEEEE
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG--------P--KTRRRIKEAEGGILFV 312 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~--~~~~~~~~a~~~vl~i 312 (482)
..++||.|+||||||++|++|++.+.. ..+|+.+.........+|... . .....+.++.++||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~-----~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~l 90 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPP-----IMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYV 90 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCc-----CCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEec
Confidence 568999999999999999999997653 226777665333333444310 0 0112355678899999
Q ss_pred ecccccccCCCCCCChhHHHHHHHHHhhhcCCc---------------EEEEEecCchhHHHHHhcCccccCCCcceeeC
Q 011578 313 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHF 377 (482)
Q Consensus 313 DE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---------------~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~ 377 (482)
||++.+.+.. .+.|++.|+++. +.+|++.++.... -...+++.+||+..+.+
T Consensus 91 DEi~rl~~~~-----------q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~--g~L~~~LldRf~l~v~~ 157 (589)
T TIGR02031 91 DMANLLDDGL-----------SNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGG--GGLPDHLLDRLALHVSL 157 (589)
T ss_pred cchhhCCHHH-----------HHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcccc--CCCCHHHHHhccCeeec
Confidence 9999999844 488999997653 4666665544311 12368899999888777
Q ss_pred CC-CCHHHHHHHHHHHHhcccccc------------ccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHH
Q 011578 378 ND-FNSEELAKILHIKMNNQTEDS------------LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNA 444 (482)
Q Consensus 378 ~~-~~~~~~~~il~~~l~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a 444 (482)
.. ++.+++.+|++.++....... ......-...++++.+..++..... .. ...-|....++..|
T Consensus 158 ~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~--~g-v~s~Ra~i~~~r~A 234 (589)
T TIGR02031 158 EDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAAS--LG-ISGHRADLFAVRAA 234 (589)
T ss_pred CCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHH--cC-CCCccHHHHHHHHH
Confidence 54 456778999988763211000 0001112234566766666665531 10 11123344444444
Q ss_pred HHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 445 RENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 445 ~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
...++. +....|+.+|+..|..-+-+
T Consensus 235 rA~Aal---------~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 235 KAHAAL---------HGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred HHHHHH---------hCCCCCCHHHHHHHHHHHhh
Confidence 444322 23467999999999876643
No 283
>PHA02244 ATPase-like protein
Probab=99.28 E-value=1.7e-11 Score=116.53 Aligned_cols=124 Identities=20% Similarity=0.173 Sum_probs=77.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccc---cchhhH-HHHHH-hcCCcEEEEeccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG---HTGPKT-RRRIK-EAEGGILFVDEAY 316 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~-~~~~~-~a~~~vl~iDE~d 316 (482)
...+++|+||||||||++|+++|..++. +|+.++...-.....| ..+... ..++. .+.+++|||||++
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~-------pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId 190 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDL-------DFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEID 190 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcC
Confidence 4568999999999999999999998765 6776663211111111 111100 01112 3568999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHhhhcC-------------CcEEEEEecCchh--HHHH----HhcCccccCCCcceeeC
Q 011578 317 RLIPMQKADDKDYGIEALEEIMSVMDG-------------GKVVVIFAGYSEP--MKRV----IASNEGFCRRVTKFFHF 377 (482)
Q Consensus 317 ~l~~~~~~~~~~~~~~~~~~ll~~l~~-------------~~~~vi~~~~~~~--~~~~----~~~~~~l~~R~~~~i~~ 377 (482)
.+.+..+ ..|...++. ..+.+|+|+++.. .... ...++++++|| ..|+|
T Consensus 191 ~a~p~vq-----------~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~ 258 (383)
T PHA02244 191 ASIPEAL-----------IIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEF 258 (383)
T ss_pred cCCHHHH-----------HHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeC
Confidence 9987433 444444432 3567777766521 1111 12379999999 68999
Q ss_pred CCCCHHH
Q 011578 378 NDFNSEE 384 (482)
Q Consensus 378 ~~~~~~~ 384 (482)
+.|+..|
T Consensus 259 dyp~~~E 265 (383)
T PHA02244 259 DYDEKIE 265 (383)
T ss_pred CCCcHHH
Confidence 9998433
No 284
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.28 E-value=4.5e-13 Score=107.35 Aligned_cols=109 Identities=25% Similarity=0.309 Sum_probs=59.4
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc--cccccccccchhhH-HHHHHhcC----CcEEEEecccc
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT--DLVGEFVGHTGPKT-RRRIKEAE----GGILFVDEAYR 317 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~-~~~~~~a~----~~vl~iDE~d~ 317 (482)
|+||+|+||+|||++|+++|+.++. .|..+... -+.+...|..--.. ...|+-.+ ..|+|+||+.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~-------~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGL-------SFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT---------EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCC-------ceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeeccccc
Confidence 6899999999999999999998876 55555443 23333333211000 01111112 27999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHhhhcCCcE-------------EEEEecCchhHHHHHhcCccccCCC
Q 011578 318 LIPMQKADDKDYGIEALEEIMSVMDGGKV-------------VVIFAGYSEPMKRVIASNEGFCRRV 371 (482)
Q Consensus 318 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------------~vi~~~~~~~~~~~~~~~~~l~~R~ 371 (482)
..++.| +.||+.|++++| +||+|.++....-......++.+||
T Consensus 74 appktQ-----------sAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 74 APPKTQ-----------SALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp S-HHHH-----------HHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred CCHHHH-----------HHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 998655 999999987443 5666645433333334467778887
No 285
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.27 E-value=1e-10 Score=110.12 Aligned_cols=94 Identities=20% Similarity=0.277 Sum_probs=58.9
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCch-----hHH--HHHhcCccccCCCcceeeCCC
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSE-----PMK--RVIASNEGFCRRVTKFFHFND 379 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~-----~~~--~~~~~~~~l~~R~~~~i~~~~ 379 (482)
|||||||++.|.- +..+-|-.+|+. -..+||+||+.- ..+ ...-.+..|++|+ .+|...+
T Consensus 280 GVLFIDEvHmLDi-----------EcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRl-lII~t~p 347 (398)
T PF06068_consen 280 GVLFIDEVHMLDI-----------ECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRL-LIIRTKP 347 (398)
T ss_dssp -EEEEESGGGSBH-----------HHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-EEEEE--
T ss_pred ceEEecchhhccH-----------HHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhc-EEEECCC
Confidence 9999999999976 555667777776 345566655311 111 0000134678899 8999999
Q ss_pred CCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHh
Q 011578 380 FNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 424 (482)
Q Consensus 380 ~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 424 (482)
|+.+|..+|++..++++. ..++.+++..++.-..
T Consensus 348 y~~~ei~~Il~iR~~~E~-----------v~i~~~al~~L~~ig~ 381 (398)
T PF06068_consen 348 YSEEEIKQILKIRAKEED-----------VEISEDALDLLTKIGV 381 (398)
T ss_dssp --HHHHHHHHHHHHHHCT-------------B-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhhhhc-----------CcCCHHHHHHHHHHhh
Confidence 999999999999998764 5678889988887543
No 286
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.26 E-value=1.6e-11 Score=109.41 Aligned_cols=143 Identities=17% Similarity=0.239 Sum_probs=91.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC-----------------CCeEEeecccccccccccchhhHHHHHHh
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-----------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKE 304 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 304 (482)
.+..+||+||||+|||++|+.+++.+........ ..+..+... +..++ ...++++++.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~~~--~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQSIK--VDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCcCC--HHHHHHHHHH
Confidence 3456999999999999999999998864211000 011211111 01111 1234444433
Q ss_pred c-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCccee
Q 011578 305 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFF 375 (482)
Q Consensus 305 a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i 375 (482)
+ ...|++|||+|.+... ..+.|+..|++ ...++|++++. . ..+ .+++++|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~-----------~~~~Ll~~le~~~~~~~~il~~~~-~-~~l---~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA-----------AANALLKTLEEPPPNTLFILITPS-P-EKL---LPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH-----------HHHHHHHHhcCCCCCeEEEEEECC-h-HhC---hHHHHhhc-EEe
Confidence 2 3479999999999873 44888888886 23444444332 2 333 78899999 799
Q ss_pred eCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHH
Q 011578 376 HFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 423 (482)
Q Consensus 376 ~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (482)
+|++|+.+++.++++.. +++++++..++...
T Consensus 151 ~~~~~~~~~~~~~l~~~-----------------gi~~~~~~~i~~~~ 181 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ-----------------GISEEAAELLLALA 181 (188)
T ss_pred eCCCCCHHHHHHHHHHc-----------------CCCHHHHHHHHHHc
Confidence 99999999998888764 13556777666654
No 287
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.26 E-value=2.4e-11 Score=110.43 Aligned_cols=174 Identities=14% Similarity=0.167 Sum_probs=108.8
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccch-hhHHHHHHh-cCCcEEEEecccccccC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG-PKTRRRIKE-AEGGILFVDEAYRLIPM 321 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~-a~~~vl~iDE~d~l~~~ 321 (482)
..+++|||+|+|||.|.+++++++..... ...++.+++.++...+..... ..+.+..+. ...-+|+||+++.+..+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~--~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHP--GKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCT--TS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccc--cccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCc
Confidence 45899999999999999999998865322 235677777666544332111 112222232 24489999999998753
Q ss_pred CCCCCChhHHHHHHHHHhh-hcCCcEEEEEecC-chhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 322 QKADDKDYGIEALEEIMSV-MDGGKVVVIFAGY-SEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~-l~~~~~~vi~~~~-~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
. ...+.+-.++.. .+.++.+|+.+.. +..+.. ..|.+.+|| ...+++.+|+.+++.+|++..+....
T Consensus 113 ~------~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~---~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~ 183 (219)
T PF00308_consen 113 Q------RTQEELFHLFNRLIESGKQLILTSDRPPSELSG---LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG 183 (219)
T ss_dssp H------HHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTT---S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT
T ss_pred h------HHHHHHHHHHHHHHhhCCeEEEEeCCCCccccc---cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC
Confidence 2 122333333333 3456666666533 333322 368889999 55899999999999999999888643
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 398 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
..++++.+..+++.. ..+.|.+..++.+...
T Consensus 184 -----------~~l~~~v~~~l~~~~-------~~~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 184 -----------IELPEEVIEYLARRF-------RRDVRELEGALNRLDA 214 (219)
T ss_dssp -------------S-HHHHHHHHHHT-------TSSHHHHHHHHHHHHH
T ss_pred -----------CCCcHHHHHHHHHhh-------cCCHHHHHHHHHHHHH
Confidence 346888899988875 5677778777776544
No 288
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.26 E-value=2.7e-10 Score=114.54 Aligned_cols=192 Identities=16% Similarity=0.225 Sum_probs=124.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHH---------------HHcCCCC--CCCCC-CceeEecCCCCchHHHHHHHH
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERR---------------KALGLKV--GARRP-PHMAFLGNPGTGKTMVARILG 264 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~---------------~~~~~~~--~~~~~-~~~ll~GppGtGKT~la~~la 264 (482)
+.|.++.|-+.+-+.+..|++...-.-.. ..+.+.. ...++ +-+||+||||-||||||+.+|
T Consensus 268 k~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViA 347 (877)
T KOG1969|consen 268 KKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIA 347 (877)
T ss_pred hHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHH
Confidence 66888899888877777776533211111 1111111 11223 337799999999999999999
Q ss_pred HHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh-----------cCCcEEEEecccccccCCCCCCChhHHHH
Q 011578 265 RLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-----------AEGGILFVDEAYRLIPMQKADDKDYGIEA 333 (482)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~ 333 (482)
+..++ .++++++++-.+ ...+++.++. .++..|+|||||.-.+ .+
T Consensus 348 kqaGY-------sVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~-----------~~ 403 (877)
T KOG1969|consen 348 KQAGY-------SVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR-----------AA 403 (877)
T ss_pred HhcCc-------eEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCCcH-----------HH
Confidence 99988 899999998533 2233332221 2457788999996653 55
Q ss_pred HHHHHhhhcC---------C---------------cEEEEEecCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHH
Q 011578 334 LEEIMSVMDG---------G---------------KVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAK 387 (482)
Q Consensus 334 ~~~ll~~l~~---------~---------------~~~vi~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~ 387 (482)
++.++..+.. + +-+|..| ++.+ .|+|+. -|..++.|++|+..-+.+
T Consensus 404 Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICIC--NdLY------aPaLR~Lr~~A~ii~f~~p~~s~Lv~ 475 (877)
T KOG1969|consen 404 VDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICIC--NDLY------APALRPLRPFAEIIAFVPPSQSRLVE 475 (877)
T ss_pred HHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEe--cCcc------chhhhhcccceEEEEecCCChhHHHH
Confidence 6777766652 0 1244445 3333 466644 567899999999988888
Q ss_pred HHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHH
Q 011578 388 ILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNA 444 (482)
Q Consensus 388 il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a 444 (482)
-|+.++..+. ..++..+|..+++.+. ++.|..-|-++-.
T Consensus 476 RL~~IC~rE~-----------mr~d~~aL~~L~el~~-------~DIRsCINtLQfL 514 (877)
T KOG1969|consen 476 RLNEICHREN-----------MRADSKALNALCELTQ-------NDIRSCINTLQFL 514 (877)
T ss_pred HHHHHHhhhc-----------CCCCHHHHHHHHHHhc-------chHHHHHHHHHHH
Confidence 8888777653 4568889999998773 4444444544443
No 289
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.25 E-value=1.3e-10 Score=113.66 Aligned_cols=155 Identities=20% Similarity=0.268 Sum_probs=89.8
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...++++.+.+...+.+...+. ...+++|+||||||||++|+.+|..+..........++.+
T Consensus 171 ~~~l~d~~i~e~~le~l~~~L~------------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtF 232 (459)
T PRK11331 171 EDALNDLFIPETTIETILKRLT------------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQF 232 (459)
T ss_pred HHHhhcccCCHHHHHHHHHHHh------------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEee
Confidence 3346677787777766655421 3568999999999999999999998753211111223444
Q ss_pred ecc----cccccc----cccc--hhhHHHHHHhc-----CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---
Q 011578 282 QRT----DLVGEF----VGHT--GPKTRRRIKEA-----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--- 343 (482)
Q Consensus 282 ~~~----~~~~~~----~g~~--~~~~~~~~~~a-----~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--- 343 (482)
+.+ +++..+ +|.. ...+.+.+..| .+.||||||+++...++ +...+++.|+.
T Consensus 233 HpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k----------iFGel~~lLE~~~r 302 (459)
T PRK11331 233 HQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK----------VFGEVMMLMEHDKR 302 (459)
T ss_pred cccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH----------hhhhhhhhcccccc
Confidence 432 222111 1211 11222333333 35899999999887643 22333443331
Q ss_pred ---------------------CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCC-CCHHHHH
Q 011578 344 ---------------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND-FNSEELA 386 (482)
Q Consensus 344 ---------------------~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~-~~~~~~~ 386 (482)
..+.||+|.++.+- .+...++||+||| ..|++.+ ++.++..
T Consensus 303 g~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Dr-s~~~lD~AlrRRF-~fi~i~p~~~~~~~~ 365 (459)
T PRK11331 303 GENWSVPLTYSENDEERFYVPENVYIIGLMNTADR-SLAVVDYALRRRF-SFIDIEPGFDTPQFR 365 (459)
T ss_pred ccccceeeeccccccccccCCCCeEEEEecCcccc-chhhccHHHHhhh-heEEecCCCChHHHH
Confidence 34677887665442 1223499999999 6666654 5554333
No 290
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.24 E-value=3.1e-11 Score=117.57 Aligned_cols=144 Identities=22% Similarity=0.227 Sum_probs=93.5
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCc-eeEecCCCCchHHHHHHHHHHHHHcCCC------------
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGIL------------ 273 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~~~~~~~~------------ 273 (482)
++++.+.....+..+.... ...+| +||+||||+|||++|.++|+.+......
T Consensus 2 ~~~~~~~~~~~l~~~~~~~---------------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~ 66 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES---------------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCK 66 (325)
T ss_pred CcccchhHHHHHHHHHHhc---------------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhh
Confidence 3566666666666653211 13345 9999999999999999999999742211
Q ss_pred -----CCCCeEEeecccccccccccchhhHHHHHH---hc----CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhh
Q 011578 274 -----PTDRVTEVQRTDLVGEFVGHTGPKTRRRIK---EA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM 341 (482)
Q Consensus 274 -----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~a----~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l 341 (482)
....++++++++....-+. ...++++.+ .. ...|++|||+|.+... +.+.|+..+
T Consensus 67 ~~~~~~~~d~lel~~s~~~~~~i~--~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~-----------A~nallk~l 133 (325)
T COG0470 67 LIPAGNHPDFLELNPSDLRKIDII--VEQVRELAEFLSESPLEGGYKVVIIDEADKLTED-----------AANALLKTL 133 (325)
T ss_pred HHhhcCCCceEEecccccCCCcch--HHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH-----------HHHHHHHHh
Confidence 1236788888775543211 122333322 22 3389999999999984 449999999
Q ss_pred cC--CcEEEEE-ecCchhHHHHHhcCccccCCCcceeeCCCCCHHHH
Q 011578 342 DG--GKVVVIF-AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEEL 385 (482)
Q Consensus 342 ~~--~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~ 385 (482)
+. ...++|+ |+++..+ -|.+++|+ ..++|++++....
T Consensus 134 Eep~~~~~~il~~n~~~~i------l~tI~SRc-~~i~f~~~~~~~~ 173 (325)
T COG0470 134 EEPPKNTRFILITNDPSKI------LPTIRSRC-QRIRFKPPSRLEA 173 (325)
T ss_pred ccCCCCeEEEEEcCChhhc------cchhhhcc-eeeecCCchHHHH
Confidence 86 3344444 4333333 67899999 8999988665433
No 291
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.22 E-value=1.9e-11 Score=118.65 Aligned_cols=132 Identities=23% Similarity=0.312 Sum_probs=86.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc--ccccccccchhhHH----HHHHhcCC-------c
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD--LVGEFVGHTGPKTR----RRIKEAEG-------G 308 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~----~~~~~a~~-------~ 308 (482)
...+++|.||||||||++|+.+|..++. +|+.+++.. ..++.+|...-... ..|.-..+ +
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~-------~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ 114 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGL-------PFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRV 114 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCC-------CeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccce
Confidence 4578999999999999999999999985 788777763 22334443221111 11111111 4
Q ss_pred EEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc--------------EEEEEecCchhHHHHHhcCccccCCCcce
Q 011578 309 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--------------VVVIFAGYSEPMKRVIASNEGFCRRVTKF 374 (482)
Q Consensus 309 vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--------------~~vi~~~~~~~~~~~~~~~~~l~~R~~~~ 374 (482)
|+|+|||++..++.+ +.|++.|++.. +++++|+|+-........++++++||...
T Consensus 115 ill~DEInra~p~~q-----------~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~ 183 (329)
T COG0714 115 ILLLDEINRAPPEVQ-----------NALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLR 183 (329)
T ss_pred EEEEeccccCCHHHH-----------HHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEE
Confidence 999999999998555 89999998622 34555534333222222378899999999
Q ss_pred eeCCCCCHHHHHHHHHH
Q 011578 375 FHFNDFNSEELAKILHI 391 (482)
Q Consensus 375 i~~~~~~~~~~~~il~~ 391 (482)
+.++.|+.++-..++..
T Consensus 184 ~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 184 IYVDYPDSEEEERIILA 200 (329)
T ss_pred EecCCCCchHHHHHHHH
Confidence 99999955544444433
No 292
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=7.7e-11 Score=113.99 Aligned_cols=151 Identities=17% Similarity=0.233 Sum_probs=98.5
Q ss_pred HHhhhhc-hHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC------
Q 011578 204 ELSNIVG-LHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 276 (482)
Q Consensus 204 ~l~~i~G-~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~------ 276 (482)
.|+.+.| ++.+++.+...+.. ...+..+||+||+|+||+++|+++|+.+.........
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~---------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~ 67 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK---------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCT 67 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCH
Confidence 3677888 88888888876321 1234456999999999999999999988643211111
Q ss_pred -----------CeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHH
Q 011578 277 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 338 (482)
Q Consensus 277 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll 338 (482)
.+..+.+. ++.++ -..++++.+. +...|++|||+|.+.. .+.|.|+
T Consensus 68 ~c~~~~~~~hpD~~~i~~~---~~~i~--id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-----------~a~NaLL 131 (329)
T PRK08058 68 NCKRIDSGNHPDVHLVAPD---GQSIK--KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-----------SAANSLL 131 (329)
T ss_pred HHHHHhcCCCCCEEEeccc---cccCC--HHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-----------HHHHHHH
Confidence 11111111 11111 1234444332 2347999999999987 4459999
Q ss_pred hhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHH
Q 011578 339 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI 391 (482)
Q Consensus 339 ~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~ 391 (482)
..|++ ...++|++++.. ..+ .|++++|+ ..++|++|+.++..+.++.
T Consensus 132 K~LEEPp~~~~~Il~t~~~--~~l---l~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 132 KFLEEPSGGTTAILLTENK--HQI---LPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHhcCCCCCceEEEEeCCh--HhC---cHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 99997 455555543321 122 68899999 9999999999998777753
No 293
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.21 E-value=4e-11 Score=102.12 Aligned_cols=124 Identities=23% Similarity=0.251 Sum_probs=75.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhh------HHHHHHhcCCcEEEEecc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPK------TRRRIKEAEGGILFVDEA 315 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~a~~~vl~iDE~ 315 (482)
...+++++||||||||++++.+++.+.. ...+++.+++.............. ..........++|+|||+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~ 93 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFR----PGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEI 93 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhc----CCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeCh
Confidence 4568999999999999999999998852 223677777766544332221111 111222345699999999
Q ss_pred cccccCCCCCCChhHHHHHHHHHhhhc----CCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCC
Q 011578 316 YRLIPMQKADDKDYGIEALEEIMSVMD----GGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND 379 (482)
Q Consensus 316 d~l~~~~~~~~~~~~~~~~~~ll~~l~----~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 379 (482)
+.+.+... ...+..+..... ...+.+|++++.... ...++.+.+||+.++.+++
T Consensus 94 ~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~---~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 94 DSLSRGAQ-------NALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred hhhhHHHH-------HHHHHHHHhcCceeccCCCeEEEEecCcccc---CCcChhHHhhhccEeecCC
Confidence 98833111 122222222222 246677777665543 1226778889988888763
No 294
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.21 E-value=3.1e-11 Score=120.48 Aligned_cols=175 Identities=18% Similarity=0.243 Sum_probs=127.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc-----ccccccchhhHH--------HHHHhcCCc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV-----GEFVGHTGPKTR--------RRIKEAEGG 308 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~~~--------~~~~~a~~~ 308 (482)
...++++.|.|||||-.+||+|.+... ..+||+.+++..+. +.+||..+.... ..+++|.++
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~-----~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gG 409 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSE-----AAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGG 409 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhccc-----ccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCC
Confidence 557899999999999999999998443 57799999997653 335555333322 356788899
Q ss_pred EEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc------------EEEEEecCchhHHHHHhcCccc----cCCC-
Q 011578 309 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK------------VVVIFAGYSEPMKRVIASNEGF----CRRV- 371 (482)
Q Consensus 309 vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~------------~~vi~~~~~~~~~~~~~~~~~l----~~R~- 371 (482)
.||+|||..+.-.-| ..||+.++++. |.||.||+.+--. +.+ +-.| ..|+
T Consensus 410 tlFldeIgd~p~~~Q-----------s~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~-lv~-~g~fredLyyrL~ 476 (606)
T COG3284 410 TLFLDEIGDMPLALQ-----------SRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQ-LVE-QGRFREDLYYRLN 476 (606)
T ss_pred ccHHHHhhhchHHHH-----------HHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHH-HHH-cCCchHHHHHHhc
Confidence 999999998876444 89999998754 4677776655433 322 2223 3355
Q ss_pred cceeeCCCCCH-HHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 372 TKFFHFNDFNS-EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 372 ~~~i~~~~~~~-~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
...|.+|++.. .++...+.+++.++.. -...++.+++..+..+.| |||.|+++|+++.+....
T Consensus 477 ~~~i~lP~lr~R~d~~~~l~~~~~~~~~--------~~~~l~~~~~~~l~~~~W------PGNirel~~v~~~~~~l~ 540 (606)
T COG3284 477 AFVITLPPLRERSDRIPLLDRILKREND--------WRLQLDDDALARLLAYRW------PGNIRELDNVIERLAALS 540 (606)
T ss_pred CeeeccCchhcccccHHHHHHHHHHccC--------CCccCCHHHHHHHHhCCC------CCcHHHHHHHHHHHHHcC
Confidence 55677777763 5666677777776542 234678899999999999 999999999999987754
No 295
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.20 E-value=8.6e-10 Score=105.18 Aligned_cols=102 Identities=15% Similarity=0.135 Sum_probs=67.2
Q ss_pred CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-------------EEEEEecCchhHHHH--HhcCccccCC
Q 011578 306 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-------------VVVIFAGYSEPMKRV--IASNEGFCRR 370 (482)
Q Consensus 306 ~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------------~~vi~~~~~~~~~~~--~~~~~~l~~R 370 (482)
..||+-|+|+.+... ++++.||..++++. .+||+++++..+... ....++|++|
T Consensus 236 NrGi~~f~Ei~K~~~-----------~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR 304 (361)
T smart00763 236 NRGILEFVEMFKADI-----------KFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDR 304 (361)
T ss_pred cCceEEEeehhcCCH-----------HHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhc
Confidence 348888899988876 66799999998633 356666665554433 2346999999
Q ss_pred CcceeeCCCCCH-HHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHh
Q 011578 371 VTKFFHFNDFNS-EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEK 427 (482)
Q Consensus 371 ~~~~i~~~~~~~-~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 427 (482)
|. .+.+|.+.. ++-.+|.+..+.... .....+.+..+...+....-++
T Consensus 305 ~~-~i~vpY~l~~~~E~~Iy~k~~~~s~--------~~~~~~aP~~le~aa~~avltR 353 (361)
T smart00763 305 II-KVKVPYCLRVSEEAQIYEKLLRNSD--------LTEAHIAPHTLEMAALFSVLTR 353 (361)
T ss_pred eE-EEeCCCcCCHHHHHHHHHHHhccCc--------CcccccCchHHHHHHHHHHHhh
Confidence 94 888887764 677788888776532 1124455555555555444333
No 296
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.19 E-value=5.4e-12 Score=106.67 Aligned_cols=108 Identities=28% Similarity=0.411 Sum_probs=66.1
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc--cccccccchhh------HHHHHHh--cCCcEEEEec
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL--VGEFVGHTGPK------TRRRIKE--AEGGILFVDE 314 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~------~~~~~~~--a~~~vl~iDE 314 (482)
+|+|+||||||||++|+.+|+.+.. +++.++.+.. ..+++|.-... ....+.. .+++|+||||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~-------~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDE 73 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGR-------PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDE 73 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTC-------EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhc-------ceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECC
Confidence 5899999999999999999999954 6666666542 11222221000 0001111 1569999999
Q ss_pred ccccccCCCCCCChhHHHHHHHHHhhhcCC---------------------cEEEEEecCchhHHHHHhcCccccCCC
Q 011578 315 AYRLIPMQKADDKDYGIEALEEIMSVMDGG---------------------KVVVIFAGYSEPMKRVIASNEGFCRRV 371 (482)
Q Consensus 315 ~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------------------~~~vi~~~~~~~~~~~~~~~~~l~~R~ 371 (482)
++...+ .++..|+..++.+ .+.+|+|.++.. ...-..++++++||
T Consensus 74 in~a~~-----------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 74 INRAPP-----------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPALLDRF 139 (139)
T ss_dssp CGG--H-----------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHHHHTT-
T ss_pred cccCCH-----------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHHHHhhC
Confidence 998876 6667777777651 167777766555 22233478899887
No 297
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.19 E-value=4.2e-10 Score=109.04 Aligned_cols=179 Identities=16% Similarity=0.216 Sum_probs=123.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCC-cEEEEeccccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG-GILFVDEAYRLIP 320 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~-~vl~iDE~d~l~~ 320 (482)
....+++|||+|.|||-|++++++.....+. +..++.++...+...++-..-.+-.+-|++... -+|+||+++.+..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~--~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGP--NARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCC--CceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcC
Confidence 4567999999999999999999999876442 234666666665554443322222233443323 5899999999987
Q ss_pred CCCCCCChhHHHHHHHHHhhhcCCcEEEEEec-CchhHHHHHhcCccccCCC--cceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 321 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAG-YSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~-~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
+.. .-.+..+.|-...+.++-+|+.+. .|..+..+ .|.|++|| ..++.+.+|+.+.+..|++.......
T Consensus 190 k~~-----~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~---~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~ 261 (408)
T COG0593 190 KER-----TQEEFFHTFNALLENGKQIVLTSDRPPKELNGL---EDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRG 261 (408)
T ss_pred Chh-----HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc---cHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcC
Confidence 532 123566677777777774444442 23333323 68899999 67889999999999999999665432
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 398 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
..++++.+..++... ..|.|++..++++....+
T Consensus 262 -----------~~i~~ev~~~la~~~-------~~nvReLegaL~~l~~~a 294 (408)
T COG0593 262 -----------IEIPDEVLEFLAKRL-------DRNVRELEGALNRLDAFA 294 (408)
T ss_pred -----------CCCCHHHHHHHHHHh-------hccHHHHHHHHHHHHHHH
Confidence 466788888888876 467788888877766554
No 298
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.18 E-value=1.3e-10 Score=100.32 Aligned_cols=136 Identities=18% Similarity=0.253 Sum_probs=81.0
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC----------------
Q 011578 210 GLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---------------- 273 (482)
Q Consensus 210 G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~---------------- 273 (482)
|++.+.+.|...+.. ..-+..+||+||+|+||+++|+.+|+.+......
T Consensus 1 gq~~~~~~L~~~~~~---------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~ 65 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS---------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEG 65 (162)
T ss_dssp S-HHHHHHHHHHHHC---------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHc---------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhc
Confidence 667777777765321 1234458999999999999999999988643322
Q ss_pred CCCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--C
Q 011578 274 PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--G 344 (482)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~ 344 (482)
....+..+.+..... .+ .-..++++.+.. ...|++|||+|.+.. ++.|.||..||+ .
T Consensus 66 ~~~d~~~~~~~~~~~-~i--~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~-----------~a~NaLLK~LEepp~ 131 (162)
T PF13177_consen 66 NHPDFIIIKPDKKKK-SI--KIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE-----------EAQNALLKTLEEPPE 131 (162)
T ss_dssp -CTTEEEEETTTSSS-SB--SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H-----------HHHHHHHHHHHSTTT
T ss_pred cCcceEEEecccccc-hh--hHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH-----------HHHHHHHHHhcCCCC
Confidence 123344443332100 11 123445554432 347999999999988 555999999997 3
Q ss_pred cEEE-EEecCchhHHHHHhcCccccCCCcceeeCCCCC
Q 011578 345 KVVV-IFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN 381 (482)
Q Consensus 345 ~~~v-i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~ 381 (482)
.+++ +.+++.+.+ .|.+++|+ ..+.|++++
T Consensus 132 ~~~fiL~t~~~~~i------l~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 132 NTYFILITNNPSKI------LPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp TEEEEEEES-GGGS-------HHHHTTS-EEEEE----
T ss_pred CEEEEEEECChHHC------hHHHHhhc-eEEecCCCC
Confidence 4444 445444444 68889999 888887754
No 299
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=1.7e-10 Score=110.84 Aligned_cols=131 Identities=13% Similarity=0.138 Sum_probs=87.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC-----------------CeEEeecccccccccccchhhHHHHHHh
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD-----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKE 304 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 304 (482)
.+..+||+||+|+|||++|+++|+.+......... .+..+.+.. .++.+ .-..++++.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~-~~~~i--~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE-ADKTI--KVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC-CCCCC--CHHHHHHHHHH
Confidence 45569999999999999999999998753211111 122222210 00111 12345554432
Q ss_pred c-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCccee
Q 011578 305 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFF 375 (482)
Q Consensus 305 a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i 375 (482)
. ...|++|||+|++.. .+.|.||..|++ +..++|++|+.... + .|.+++|+ ..+
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~-----------~aaNaLLK~LEEPp~~~~fiL~t~~~~~--l---l~TI~SRc-~~~ 160 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNR-----------NAANALLKSLEEPSGDTVLLLISHQPSR--L---LPTIKSRC-QQQ 160 (328)
T ss_pred HhhccccCCCeEEEECChhhCCH-----------HHHHHHHHHHhCCCCCeEEEEEECChhh--C---cHHHHhhc-eee
Confidence 2 347999999999988 455999999998 45555555433222 2 78999999 789
Q ss_pred eCCCCCHHHHHHHHHHH
Q 011578 376 HFNDFNSEELAKILHIK 392 (482)
Q Consensus 376 ~~~~~~~~~~~~il~~~ 392 (482)
.|++|+.++..+.+...
T Consensus 161 ~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 161 ACPLPSNEESLQWLQQA 177 (328)
T ss_pred eCCCcCHHHHHHHHHHh
Confidence 99999999998888764
No 300
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.17 E-value=2.9e-11 Score=101.85 Aligned_cols=113 Identities=20% Similarity=0.325 Sum_probs=71.7
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEeccccccc
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIP 320 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~ 320 (482)
....+|+++|+|||||+++|++|+... .....+|+.+++..+. .+.++.+.+++|||+|+|.|.+
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~~----~~~~~~~~~~~~~~~~-----------~~~l~~a~~gtL~l~~i~~L~~ 83 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRYS----GRANGPFIVIDCASLP-----------AELLEQAKGGTLYLKNIDRLSP 83 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHTT----TTCCS-CCCCCHHCTC-----------HHHHHHCTTSEEEEECGCCS-H
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhhc----CccCCCeEEechhhCc-----------HHHHHHcCCCEEEECChHHCCH
Confidence 456789999999999999999999843 3344566666655432 5577888999999999999998
Q ss_pred CCCCCCChhHHHHHHHHHhhhc---CCcEEEEEecCchhHHHH--HhcCccccCCC-cceeeCCC
Q 011578 321 MQKADDKDYGIEALEEIMSVMD---GGKVVVIFAGYSEPMKRV--IASNEGFCRRV-TKFFHFND 379 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~l~---~~~~~vi~~~~~~~~~~~--~~~~~~l~~R~-~~~i~~~~ 379 (482)
..| ..|+..++ ..++.+|+++..+....+ -..++.|..|+ ...|.+|+
T Consensus 84 ~~Q-----------~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPp 137 (138)
T PF14532_consen 84 EAQ-----------RRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPP 137 (138)
T ss_dssp HHH-----------HHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred HHH-----------HHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCC
Confidence 655 45555554 456677776654432211 11135556666 34566654
No 301
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.15 E-value=2e-09 Score=99.63 Aligned_cols=212 Identities=18% Similarity=0.183 Sum_probs=134.2
Q ss_pred hhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcC--CCCCCCeEEeeccc
Q 011578 208 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG--ILPTDRVTEVQRTD 285 (482)
Q Consensus 208 i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~--~~~~~~~~~~~~~~ 285 (482)
-+|....++.+.....-+..| .....+++|++|++|.|||++++.+.+.-.... -....|++.+....
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P----------~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYP----------KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCC----------cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC
Confidence 378887777777654434333 224567899999999999999999998553211 01123566665532
Q ss_pred cccc---------ccc----------cchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcE
Q 011578 286 LVGE---------FVG----------HTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV 346 (482)
Q Consensus 286 ~~~~---------~~g----------~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 346 (482)
-.+. .+| +....+..+|+...-.+|+|||++.+..... ...+.++|.|-..-.+-++
T Consensus 106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~----~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 106 EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY----RKQREFLNALKFLGNELQI 181 (302)
T ss_pred CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH----HHHHHHHHHHHHHhhccCC
Confidence 1111 011 1122233556666779999999999865221 2233555555555445677
Q ss_pred EEEEecCchhHHHHHhcCccccCCCcceeeCCCCCH-HHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhh
Q 011578 347 VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT 425 (482)
Q Consensus 347 ~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~-~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 425 (482)
-+|+.++.+... .+..||-+.+|| ..+.+|.-.. ++-..++..+-...+ ++-...+....++...-..+
T Consensus 182 piV~vGt~~A~~-al~~D~QLa~RF-~~~~Lp~W~~d~ef~~LL~s~e~~LP-------Lr~~S~l~~~~la~~i~~~s- 251 (302)
T PF05621_consen 182 PIVGVGTREAYR-ALRTDPQLASRF-EPFELPRWELDEEFRRLLASFERALP-------LRKPSNLASPELARRIHERS- 251 (302)
T ss_pred CeEEeccHHHHH-HhccCHHHHhcc-CCccCCCCCCCcHHHHHHHHHHHhCC-------CCCCCCCCCHHHHHHHHHHc-
Confidence 777777777665 567799999999 6777777664 566777777665554 23334455566665555544
Q ss_pred HhhccccCcchhHHHHHHHHHHh
Q 011578 426 EKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 426 ~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
.|.-.++..++..|...+
T Consensus 252 -----~G~iG~l~~ll~~aA~~A 269 (302)
T PF05621_consen 252 -----EGLIGELSRLLNAAAIAA 269 (302)
T ss_pred -----CCchHHHHHHHHHHHHHH
Confidence 677788889988888776
No 302
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.13 E-value=6e-10 Score=106.51 Aligned_cols=158 Identities=22% Similarity=0.239 Sum_probs=106.9
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 284 (482)
|.-++|++.+|..|.-- .+ .....++|+.|+.||||||++|+||..|...-... +.-+.+++.
T Consensus 16 f~aivGqd~lk~aL~l~--av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~cdP~ 78 (423)
T COG1239 16 FTAIVGQDPLKLALGLN--AV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFNCDPD 78 (423)
T ss_pred hhhhcCchHHHHHHhhh--hc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCCCCCC
Confidence 55689999999887643 11 23557899999999999999999999885322111 222222222
Q ss_pred cc----------------------------------cccccccc--hhhHH--------HHHHhcCCcEEEEeccccccc
Q 011578 285 DL----------------------------------VGEFVGHT--GPKTR--------RRIKEAEGGILFVDEAYRLIP 320 (482)
Q Consensus 285 ~~----------------------------------~~~~~g~~--~~~~~--------~~~~~a~~~vl~iDE~d~l~~ 320 (482)
+- ....+|.- ++.++ .++.+|.+|||+|||+..|..
T Consensus 79 ~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d 158 (423)
T COG1239 79 DPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDD 158 (423)
T ss_pred ChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccH
Confidence 11 11133431 11111 245567789999999988876
Q ss_pred CCCCCCChhHHHHHHHHHhhhcCC---------------cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCC-HHH
Q 011578 321 MQKADDKDYGIEALEEIMSVMDGG---------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEE 384 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~l~~~---------------~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~-~~~ 384 (482)
.+++.||..++.| ++++|++.|+..- ++ .|.|++||...+....|. .++
T Consensus 159 -----------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeG-eL---rpqLlDRfg~~v~~~~~~~~~~ 223 (423)
T COG1239 159 -----------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEG-EL---RPQLLDRFGLEVDTHYPLDLEE 223 (423)
T ss_pred -----------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCcccc-cc---chhhHhhhcceeeccCCCCHHH
Confidence 6779999998774 3577888776632 23 799999999999986555 689
Q ss_pred HHHHHHHHHh
Q 011578 385 LAKILHIKMN 394 (482)
Q Consensus 385 ~~~il~~~l~ 394 (482)
+.+|+++.+.
T Consensus 224 rv~Ii~r~~~ 233 (423)
T COG1239 224 RVEIIRRRLA 233 (423)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 303
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.13 E-value=4.8e-09 Score=92.33 Aligned_cols=197 Identities=19% Similarity=0.266 Sum_probs=125.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
-.+.+++|.+.+++.+.+-...+ ....+..+|||+|.-|||||+++||+-+++...+. .+++++
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F------------~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl----rLVEV~ 120 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQF------------AEGLPANNVLLWGARGTGKSSLVKALLNEYADEGL----RLVEVD 120 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHH------------HcCCcccceEEecCCCCChHHHHHHHHHHHHhcCC----eEEEEc
Confidence 45778999999999998764444 22346678999999999999999999999987665 489999
Q ss_pred cccccccccccchhhHHHHHHhc-CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC------CcEEEEEecCch
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGYSE 355 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a-~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~------~~~~vi~~~~~~ 355 (482)
..++.. -..+-+.++.. ..=|||.|+.- + ++++ .....|-..||+ ..|++.+|++..
T Consensus 121 k~dl~~------Lp~l~~~Lr~~~~kFIlFcDDLS-F------e~gd---~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 121 KEDLAT------LPDLVELLRARPEKFILFCDDLS-F------EEGD---DAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred HHHHhh------HHHHHHHHhcCCceEEEEecCCC-C------CCCc---hHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 887642 12233334433 33788988862 1 1111 223455666665 245555554322
Q ss_pred hHH-HHHh----------------cCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHH
Q 011578 356 PMK-RVIA----------------SNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAA 418 (482)
Q Consensus 356 ~~~-~~~~----------------~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (482)
-.. +... .--++.+||...+.|++++.++-..|+..+.++.. ..++++.+..
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~-----------l~~~~e~l~~ 253 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFG-----------LDISDEELHA 253 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHH
Confidence 211 0100 01346779999999999999999999999987643 2344555555
Q ss_pred HHHHHhhHhhccccCcchhHHHHHHH
Q 011578 419 LIEKETTEKQRREMNGGLVDPMLVNA 444 (482)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~l~~~~~~a 444 (482)
.+-... ..+..-+||-..+.++..
T Consensus 254 eAl~WA--t~rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 254 EALQWA--TTRGGRSGRVAWQFIRDL 277 (287)
T ss_pred HHHHHH--HhcCCCccHhHHHHHHHH
Confidence 554332 222234566666655443
No 304
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.10 E-value=5.7e-10 Score=114.57 Aligned_cols=242 Identities=17% Similarity=0.284 Sum_probs=145.8
Q ss_pred hhhhchHHHHHHHHHHH-HHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCe---EEe
Q 011578 206 SNIVGLHELKIQLRKWA-KGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV---TEV 281 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~---~~~ 281 (482)
..|.|++.+|+.|.-.+ ... .+...-........|+||.|.||||||.+-+.+++.+.. ++..++.- ..+
T Consensus 286 PsIyG~e~VKkAilLqLfgGv-----~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr-~vytsgkgss~~GL 359 (682)
T COG1241 286 PSIYGHEDVKKAILLQLFGGV-----KKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR-GVYTSGKGSSAAGL 359 (682)
T ss_pred ccccCcHHHHHHHHHHhcCCC-----cccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc-eEEEccccccccCc
Confidence 36889999988876431 111 010111111123468999999999999999999987753 11111100 001
Q ss_pred eccc----ccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEE---------
Q 011578 282 QRTD----LVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVV--------- 348 (482)
Q Consensus 282 ~~~~----~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~v--------- 348 (482)
+++- ..++|+=+. .++-.|.+||..|||+|++..... +.+.+.|+...+-+
T Consensus 360 TAav~rd~~tge~~Lea-----GALVlAD~Gv~cIDEfdKm~~~dr-----------~aihEaMEQQtIsIaKAGI~atL 423 (682)
T COG1241 360 TAAVVRDKVTGEWVLEA-----GALVLADGGVCCIDEFDKMNEEDR-----------VAIHEAMEQQTISIAKAGITATL 423 (682)
T ss_pred eeEEEEccCCCeEEEeC-----CEEEEecCCEEEEEeccCCChHHH-----------HHHHHHHHhcEeeecccceeeec
Confidence 1110 011122111 234457789999999999976433 77888888644322
Q ss_pred ------EEecCc--------hhHHHHHhcCccccCCCcceeeC-CCCCHHHHHHHHHHHHhccc----------------
Q 011578 349 ------IFAGYS--------EPMKRVIASNEGFCRRVTKFFHF-NDFNSEELAKILHIKMNNQT---------------- 397 (482)
Q Consensus 349 ------i~~~~~--------~~~~~~~~~~~~l~~R~~~~i~~-~~~~~~~~~~il~~~l~~~~---------------- 397 (482)
++|.++ .+...-+..+++|++|||.++.+ ..|+++.=..|....+....
T Consensus 424 nARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~ 503 (682)
T COG1241 424 NARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEV 503 (682)
T ss_pred chhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccccccccc
Confidence 222111 11122333458899999987775 56666544445444444331
Q ss_pred --------cccccccc-cccCcccHHHHHHHHHHHhhHhhc---------cccCcchhHHHHHHHHHHhhhhhcCCCCCh
Q 011578 398 --------EDSLLYGF-KLHSSCSMDAIAALIEKETTEKQR---------REMNGGLVDPMLVNARENLDLRLSFDCLDT 459 (482)
Q Consensus 398 --------~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~ 459 (482)
+....|.- ...|.++.++.+.+.+.|...+.. .+.-.|+|..+++.+...+..|++
T Consensus 504 ~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS------ 577 (682)
T COG1241 504 EERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLS------ 577 (682)
T ss_pred ccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhcc------
Confidence 01112222 255889999999999988855432 234579999999999998888877
Q ss_pred hhhhcccHHHHHHHHHHHH
Q 011578 460 DELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 460 ~~~~~i~~~d~~~al~~~~ 478 (482)
..++.+|..+|++-+.
T Consensus 578 ---~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 578 ---DVVEEEDVDEAIRLVD 593 (682)
T ss_pred ---CCCCHHHHHHHHHHHH
Confidence 4689999999988765
No 305
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.07 E-value=1.1e-08 Score=102.86 Aligned_cols=206 Identities=18% Similarity=0.197 Sum_probs=138.2
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH---HcCCCCCCCeEEeeccccccc----------ccccch------hhHHHHHH--
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY---MVGILPTDRVTEVQRTDLVGE----------FVGHTG------PKTRRRIK-- 303 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~---~~~~~~~~~~~~~~~~~~~~~----------~~g~~~------~~~~~~~~-- 303 (482)
-+.+.|-||||||.+++.+-++|. ..+....-.++++++..+.+. +-|+.. ..+..-|.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 577889999999999999999886 345555667889998776542 334321 12223343
Q ss_pred --hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhc--CCcEEEEE-ecCchhHHHHHhcCccccCCC-cceeeC
Q 011578 304 --EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD--GGKVVVIF-AGYSEPMKRVIASNEGFCRRV-TKFFHF 377 (482)
Q Consensus 304 --~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~--~~~~~vi~-~~~~~~~~~~~~~~~~l~~R~-~~~i~~ 377 (482)
....+||+|||.|.|....| .++-.|..+-. ..+++||+ ++|-+-.+.++ .+...+|+ -.+|.|
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~Q--------dVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l--~nrvsSRlg~tRi~F 573 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRSQ--------DVLYNIFDWPTLKNSKLVVIAIANTMDLPERLL--MNRVSSRLGLTRICF 573 (767)
T ss_pred CCCCCCEEEEeccHHHHhcccH--------HHHHHHhcCCcCCCCceEEEEecccccCHHHHh--ccchhhhccceeeec
Confidence 12348999999999998877 45444444432 35555555 55555445553 34455666 368999
Q ss_pred CCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCC
Q 011578 378 NDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCL 457 (482)
Q Consensus 378 ~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~ 457 (482)
.+++.+++.+|+...|+.. ..++.+++.-.+++- ....|+.|....++++|.+.+..+....
T Consensus 574 ~pYth~qLq~Ii~~RL~~~------------~~f~~~aielvarkV----AavSGDaRraldic~RA~Eia~~~~~~~-- 635 (767)
T KOG1514|consen 574 QPYTHEQLQEIISARLKGL------------DAFENKAIELVARKV----AAVSGDARRALDICRRAAEIAEERNVKG-- 635 (767)
T ss_pred CCCCHHHHHHHHHHhhcch------------hhcchhHHHHHHHHH----HhccccHHHHHHHHHHHHHHhhhhcccc--
Confidence 9999999999999988753 234555555554432 2335778888899999988876554421
Q ss_pred ChhhhhcccHHHHHHHHHHHH
Q 011578 458 DTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 458 ~~~~~~~i~~~d~~~al~~~~ 478 (482)
.......+++-|+.+|+..+.
T Consensus 636 k~~~~q~v~~~~v~~Ai~em~ 656 (767)
T KOG1514|consen 636 KLAVSQLVGILHVMEAINEML 656 (767)
T ss_pred cccccceeehHHHHHHHHHHh
Confidence 223456789999999998764
No 306
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=99.04 E-value=1.2e-09 Score=105.64 Aligned_cols=240 Identities=17% Similarity=0.220 Sum_probs=132.6
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc-
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD- 285 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~- 285 (482)
.|.|.+.+|..+.-.+ . .................|+||.|.||||||.+.+.+++.... -+.+++..
T Consensus 25 ~i~g~~~iK~aill~L---~-~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr--------~v~~~g~~~ 92 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQL---F-GGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPR--------SVYTSGKGS 92 (331)
T ss_dssp TTTT-HHHHHHHCCCC---T-T--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SS--------EEEEECCGS
T ss_pred cCcCcHHHHHHHHHHH---H-hccccccccccccccccceeeccchhhhHHHHHHHHHhhCCc--------eEEECCCCc
Confidence 5788888877765221 0 000000000000124568999999999999999988765432 22222211
Q ss_pred ----cccccc---ccchhhH-HHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcE-----------
Q 011578 286 ----LVGEFV---GHTGPKT-RRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV----------- 346 (482)
Q Consensus 286 ----~~~~~~---g~~~~~~-~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~----------- 346 (482)
+..... ...+..+ ...+-.|.+||++|||+|++.. .....|.+.|+.+.+
T Consensus 93 s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~-----------~~~~~l~eaMEqq~isi~kagi~~~l 161 (331)
T PF00493_consen 93 SAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKE-----------DDRDALHEAMEQQTISIAKAGIVTTL 161 (331)
T ss_dssp TCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--C-----------HHHHHHHHHHHCSCEEECTSSSEEEE
T ss_pred ccCCccceeccccccceeEEeCCchhcccCceeeecccccccc-----------hHHHHHHHHHHcCeeccchhhhcccc
Confidence 111100 0111122 2356778999999999999987 334889999987432
Q ss_pred ----EEEEecCchhHH--------HHHhcCccccCCCcceeeC-CCCCHHHHHHHHHHHHhcccccc-------------
Q 011578 347 ----VVIFAGYSEPMK--------RVIASNEGFCRRVTKFFHF-NDFNSEELAKILHIKMNNQTEDS------------- 400 (482)
Q Consensus 347 ----~vi~~~~~~~~~--------~~~~~~~~l~~R~~~~i~~-~~~~~~~~~~il~~~l~~~~~~~------------- 400 (482)
.|+++.++..-. .-+...++|++|||.++.+ ..++.+.-..|.+..+.......
T Consensus 162 ~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~ 241 (331)
T PF00493_consen 162 NARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKP 241 (331)
T ss_dssp E---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-T
T ss_pred cchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCc
Confidence 555554433210 1122358999999988775 67776666666666665543221
Q ss_pred ---------ccc-cccccCcccHHHHHHHHHHHhhHhhc-------cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhh
Q 011578 401 ---------LLY-GFKLHSSCSMDAIAALIEKETTEKQR-------REMNGGLVDPMLVNARENLDLRLSFDCLDTDELR 463 (482)
Q Consensus 401 ---------~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~ 463 (482)
..| +..+.|.+++++...+...|...+.. .+...|.+..+++.|...+..|+. .
T Consensus 242 ~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr---------~ 312 (331)
T PF00493_consen 242 ISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLR---------D 312 (331)
T ss_dssp T-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTS---------S
T ss_pred cCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhcc---------C
Confidence 011 11467788888888887777633332 245679999999988888766665 4
Q ss_pred cccHHHHHHHHHHHH
Q 011578 464 TITLEDLEAGLKLLL 478 (482)
Q Consensus 464 ~i~~~d~~~al~~~~ 478 (482)
.|+.+|+..|+.-+.
T Consensus 313 ~V~~~Dv~~Ai~L~~ 327 (331)
T PF00493_consen 313 EVTEEDVEEAIRLFE 327 (331)
T ss_dssp ECSHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHHH
Confidence 799999999987664
No 307
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.02 E-value=2.5e-09 Score=109.86 Aligned_cols=195 Identities=18% Similarity=0.186 Sum_probs=129.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccc---------hh-hHHHHHHhcCCcEEE
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT---------GP-KTRRRIKEAEGGILF 311 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~~-~~~~~~~~a~~~vl~ 311 (482)
...+|++.|++||+||+++++++..+.. ..||+.+..+.-....+|.. .. .-..++..|.+||||
T Consensus 24 ~~gGv~i~g~~G~~ks~~~r~l~~llp~-----~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~ 98 (584)
T PRK13406 24 GLGGVVLRARAGPVRDRWLAALRALLPA-----GTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLV 98 (584)
T ss_pred ccceEEEEcCCCcHHHHHHHHHHHhcCC-----CCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEE
Confidence 3468999999999999999999987753 24788777766555666652 11 123467788899999
Q ss_pred EecccccccCCCCCCChhHHHHHHHHHhhhcCCcE---------------EEEEecCchhHHHHHhcCccccCCCcceee
Q 011578 312 VDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---------------VVIFAGYSEPMKRVIASNEGFCRRVTKFFH 376 (482)
Q Consensus 312 iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------------~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~ 376 (482)
|||+..+.+ .+++.|++.|+.+.+ ++|++ .++........+++++||+..+.
T Consensus 99 lDe~n~~~~-----------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat--~~~~~~~~~L~~~lLDRf~l~v~ 165 (584)
T PRK13406 99 LAMAERLEP-----------GTAARLAAALDTGEVRLERDGLALRLPARFGLVAL--DEGAEEDERAPAALADRLAFHLD 165 (584)
T ss_pred ecCcccCCH-----------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEec--CCChhcccCCCHHhHhheEEEEE
Confidence 999988887 777999999998654 34443 22221112337889999999999
Q ss_pred CCCCCHHHHH-------HHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcccc-CcchhHHHHHHHHHHh
Q 011578 377 FNDFNSEELA-------KILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM-NGGLVDPMLVNARENL 448 (482)
Q Consensus 377 ~~~~~~~~~~-------~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~~a~~~~ 448 (482)
++.++..+.. +|....- .+ -...++.+.+..++.-... ... ..|.-..++.-|...+
T Consensus 166 v~~~~~~~~~~~~~~~~~I~~AR~----------rl-~~v~v~~~~l~~i~~~~~~----~gv~S~Ra~i~llraARa~A 230 (584)
T PRK13406 166 LDGLALRDAREIPIDADDIAAARA----------RL-PAVGPPPEAIAALCAAAAA----LGIASLRAPLLALRAARAAA 230 (584)
T ss_pred cCCCChHHhcccCCCHHHHHHHHH----------HH-ccCCCCHHHHHHHHHHHHH----hCCCCcCHHHHHHHHHHHHH
Confidence 9998875542 1221110 01 1345677777776654331 111 3455556666665554
Q ss_pred hhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 449 DLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 449 ~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
.-+....|+.+|+.+|+.-+-
T Consensus 231 ---------aL~Gr~~V~~~dv~~Aa~lvL 251 (584)
T PRK13406 231 ---------ALAGRTAVEEEDLALAARLVL 251 (584)
T ss_pred ---------HHcCCCCCCHHHHHHHHHHHH
Confidence 223456899999999987664
No 308
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=2.3e-09 Score=102.95 Aligned_cols=131 Identities=18% Similarity=0.178 Sum_probs=87.0
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC-C-----------------CCeEEeeccccc---------------
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-T-----------------DRVTEVQRTDLV--------------- 287 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-~-----------------~~~~~~~~~~~~--------------- 287 (482)
..+..+||+||+|+||+++|+.+|+.+....... . ..+..+.+....
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 3566799999999999999999999987533211 1 112222211000
Q ss_pred ---c-------cccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEE
Q 011578 288 ---G-------EFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVV 348 (482)
Q Consensus 288 ---~-------~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~v 348 (482)
+ +.+ .-..++++.+.. ...|++||++|.+.. .+.|.||..+|+ ..+++
T Consensus 99 ~~~~~k~~~~~~~I--~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEI--KIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-----------AAANALLKTLEEPPPGTVF 165 (342)
T ss_pred hccccccccccccc--CHHHHHHHHHHhccCCccCCceEEEEechhhcCH-----------HHHHHHHHHhcCCCcCcEE
Confidence 0 001 112344444322 237999999999987 455999999997 44444
Q ss_pred EEe-cCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHH
Q 011578 349 IFA-GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI 391 (482)
Q Consensus 349 i~~-~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~ 391 (482)
|+. +.++.+ .|.+++|+ ..+.|++|+.++..+.+..
T Consensus 166 iL~t~~~~~L------LpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 166 LLVSARIDRL------LPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EEEECChhhC------cHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 444 333333 78899999 8999999999999988865
No 309
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=3.1e-09 Score=101.16 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=84.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC--------------CeEEe--ecccccccc--cccchhhHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD--------------RVTEV--QRTDLVGEF--VGHTGPKTRRRIK 303 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~--------------~~~~~--~~~~~~~~~--~g~~~~~~~~~~~ 303 (482)
-+..+||+||+|+||+++|.++|+.+........+ .+..+ .+.. .++- ..-.-..++++.+
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~-~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR-TGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCc-ccccccccccHHHHHHHHH
Confidence 34459999999999999999999988653211110 11112 1110 0000 0001223444443
Q ss_pred hc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcE-EEEEecCchhHHHHHhcCccccCCCcc
Q 011578 304 EA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKV-VVIFAGYSEPMKRVIASNEGFCRRVTK 373 (482)
Q Consensus 304 ~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~-~vi~~~~~~~~~~~~~~~~~l~~R~~~ 373 (482)
.. ...|++||++|.+.. .+.|.||..||+ +.. +++.+..+..+ .|.+++|+ .
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~~~fiL~~~~~~~l------LpTIrSRC-q 165 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAINR-----------AACNALLKTLEEPSPGRYLWLISAQPARL------PATIRSRC-Q 165 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhCH-----------HHHHHHHHHhhCCCCCCeEEEEECChhhC------chHHHhhh-e
Confidence 21 237999999999987 445999999998 344 44444333333 68999999 9
Q ss_pred eeeCCCCCHHHHHHHHHH
Q 011578 374 FFHFNDFNSEELAKILHI 391 (482)
Q Consensus 374 ~i~~~~~~~~~~~~il~~ 391 (482)
.+.|++|+.++....+..
T Consensus 166 ~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 166 RLEFKLPPAHEALAWLLA 183 (319)
T ss_pred EeeCCCcCHHHHHHHHHH
Confidence 999999999988877764
No 310
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.99 E-value=1.2e-09 Score=92.13 Aligned_cols=77 Identities=29% Similarity=0.398 Sum_probs=52.4
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc--------------ccccchhhHHHHHHhcCC-
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE--------------FVGHTGPKTRRRIKEAEG- 307 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~~~~~~~~~~~~a~~- 307 (482)
..+++|+||||||||++++.+|..+...+ ..++.+++...... .........+..+..++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG----GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC----CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 45799999999999999999999776532 24666666543221 112233444555555543
Q ss_pred --cEEEEecccccccCCC
Q 011578 308 --GILFVDEAYRLIPMQK 323 (482)
Q Consensus 308 --~vl~iDE~d~l~~~~~ 323 (482)
.||||||++.+.....
T Consensus 78 ~~~viiiDei~~~~~~~~ 95 (148)
T smart00382 78 KPDVLILDEITSLLDAEQ 95 (148)
T ss_pred CCCEEEEECCcccCCHHH
Confidence 9999999999987433
No 311
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.98 E-value=4.3e-09 Score=94.99 Aligned_cols=94 Identities=21% Similarity=0.304 Sum_probs=64.9
Q ss_pred CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-cEEEEEecCc--------hhHHHHHhcCccccCCCcceeeC
Q 011578 307 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYS--------EPMKRVIASNEGFCRRVTKFFHF 377 (482)
Q Consensus 307 ~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~vi~~~~~--------~~~~~~~~~~~~l~~R~~~~i~~ 377 (482)
+|||||||++.|.- +...-|-+.+++. ..+||+|++. ..+....-..+.+++|+ .+|+.
T Consensus 297 PGVLFIDEVhMLDi-----------EcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl-~Iirt 364 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDI-----------ECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL-LIIRT 364 (456)
T ss_pred CcceEeeehhhhhh-----------HHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhhe-eEEee
Confidence 49999999999865 4556777778772 3345555431 11111111247788998 88999
Q ss_pred CCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHH
Q 011578 378 NDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 423 (482)
Q Consensus 378 ~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (482)
-+++.+++++|++...+.+. ..++++++..+..-.
T Consensus 365 ~~y~~~e~r~Ii~~Ra~~E~-----------l~~~e~a~~~l~~~g 399 (456)
T KOG1942|consen 365 LPYDEEEIRQIIKIRAQVEG-----------LQVEEEALDLLAEIG 399 (456)
T ss_pred ccCCHHHHHHHHHHHHhhhc-----------ceecHHHHHHHHhhc
Confidence 99999999999999877653 345778888887743
No 312
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=3.2e-09 Score=101.27 Aligned_cols=129 Identities=12% Similarity=0.176 Sum_probs=86.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC-----------------eEEeecccccccccccchhhHHHHHHh
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR-----------------VTEVQRTDLVGEFVGHTGPKTRRRIKE 304 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~ 304 (482)
-+..+||+||+|+||+++|+.+|+.+.........+ +..+.+. .++.+| ...+|++.+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~--~~~~I~--id~iR~l~~~ 98 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI--DNKDIG--VDQVREINEK 98 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc--cCCCCC--HHHHHHHHHH
Confidence 355688999999999999999999886532211111 2222211 011122 2344544332
Q ss_pred c-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecC-chhHHHHHhcCccccCCCcce
Q 011578 305 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGY-SEPMKRVIASNEGFCRRVTKF 374 (482)
Q Consensus 305 a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~-~~~~~~~~~~~~~l~~R~~~~ 374 (482)
. ...|++||++|++.. .+.|.||..+|+ ..+++|++++ +..+ .|.+++|+ ..
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~~-----------~AaNaLLKtLEEPp~~~~fiL~t~~~~~l------lpTI~SRC-~~ 160 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLTE-----------AAANALLKTLEEPRPNTYFLLQADLSAAL------LPTIYSRC-QT 160 (325)
T ss_pred HhhccccCCceEEEEechhhhCH-----------HHHHHHHHHhcCCCCCeEEEEEECChHhC------chHHHhhc-eE
Confidence 1 237999999999987 445999999998 4455555433 3333 78899999 99
Q ss_pred eeCCCCCHHHHHHHHHHH
Q 011578 375 FHFNDFNSEELAKILHIK 392 (482)
Q Consensus 375 i~~~~~~~~~~~~il~~~ 392 (482)
+.|++|+.++..+.+...
T Consensus 161 ~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 999999999998888764
No 313
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=4.2e-09 Score=101.49 Aligned_cols=129 Identities=9% Similarity=0.068 Sum_probs=84.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC-----------------CCeEEeecccccccccccchhhHHHHHHh
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-----------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKE 304 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 304 (482)
.+..+||+||+|+||+++|+++|+.+........ ..+..+.+..- +..+ +...++++.+.
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~I--~idqiR~l~~~ 99 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KSSL--GVDAVREVTEK 99 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cccC--CHHHHHHHHHH
Confidence 4556889999999999999999998864221111 11222221100 0111 12234444432
Q ss_pred -------cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEE-ecCchhHHHHHhcCccccCCCcce
Q 011578 305 -------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF-AGYSEPMKRVIASNEGFCRRVTKF 374 (482)
Q Consensus 305 -------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~~~ 374 (482)
....|++||++|++.. .+.|.||..||+ ...++|+ |.++..+ .|.++||+ ..
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~t~fiL~t~~~~~l------LpTIrSRC-q~ 161 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLTD-----------AAANALLKTLEEPPENTWFFLACREPARL------LATLRSRC-RL 161 (334)
T ss_pred HhhccccCCceEEEEcchHhhCH-----------HHHHHHHHHhcCCCCCeEEEEEECChhhC------hHHHHhcc-cc
Confidence 2337999999999998 445999999998 3444444 4333333 68899999 68
Q ss_pred eeCCCCCHHHHHHHHHH
Q 011578 375 FHFNDFNSEELAKILHI 391 (482)
Q Consensus 375 i~~~~~~~~~~~~il~~ 391 (482)
+.|++|+.++..+.+..
T Consensus 162 ~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 162 HYLAPPPEQYALTWLSR 178 (334)
T ss_pred ccCCCCCHHHHHHHHHH
Confidence 99999999988887754
No 314
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3.7e-09 Score=102.74 Aligned_cols=136 Identities=18% Similarity=0.325 Sum_probs=95.3
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccch----hhHHHHHHhcCC---cEEEEe
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG----PKTRRRIKEAEG---GILFVD 313 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~a~~---~vl~iD 313 (482)
.+..++||.||||+|||+||-.+|..... ||+.+-.++ +.+|-++ .-+.++|+.|.. +||++|
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~F-------PFvKiiSpe---~miG~sEsaKc~~i~k~F~DAYkS~lsiivvD 605 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDF-------PFVKIISPE---DMIGLSESAKCAHIKKIFEDAYKSPLSIIVVD 605 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCC-------CeEEEeChH---HccCccHHHHHHHHHHHHHHhhcCcceEEEEc
Confidence 35567999999999999999999987765 888765543 2344433 336788998865 899999
Q ss_pred cccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecCchh-HHHHHhcCccccCCCcceeeCCCCCH-HHHHH
Q 011578 314 EAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSEP-MKRVIASNEGFCRRVTKFFHFNDFNS-EELAK 387 (482)
Q Consensus 314 E~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~~~-~~~~~~~~~~l~~R~~~~i~~~~~~~-~~~~~ 387 (482)
++++|..--. -+..++.-++.+|+-.+.. |+-.+|++|++.. +.. .-.+...|+..+++|..+. ++..+
T Consensus 606 diErLiD~vp-IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~----~m~i~~~F~~~i~Vpnl~~~~~~~~ 680 (744)
T KOG0741|consen 606 DIERLLDYVP-IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ----EMGILDCFSSTIHVPNLTTGEQLLE 680 (744)
T ss_pred chhhhhcccc-cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH----HcCHHHhhhheeecCccCchHHHHH
Confidence 9999974221 1345556677777777764 4444444444433 321 3456778999999999996 78888
Q ss_pred HHHH
Q 011578 388 ILHI 391 (482)
Q Consensus 388 il~~ 391 (482)
++..
T Consensus 681 vl~~ 684 (744)
T KOG0741|consen 681 VLEE 684 (744)
T ss_pred HHHH
Confidence 8765
No 315
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=5e-09 Score=99.65 Aligned_cols=129 Identities=9% Similarity=0.143 Sum_probs=85.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCC----------------CCCeEEeecccccccccccchhhHHHHHHh-
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILP----------------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE- 304 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~- 304 (482)
-+..+||+||.|+||+++|+.+|+.+....... ...+..+.+.. .++.++ ...++++.+.
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I~--vdqiR~l~~~~ 100 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSIT--VEQIRQCNRLA 100 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcCC--HHHHHHHHHHH
Confidence 455699999999999999999999886432110 01122222211 011111 1233443322
Q ss_pred --c----CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEE-ecCchhHHHHHhcCccccCCCccee
Q 011578 305 --A----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF-AGYSEPMKRVIASNEGFCRRVTKFF 375 (482)
Q Consensus 305 --a----~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~~~i 375 (482)
. ...|++||++|.+.. .+.|.||..+|+ ...++|+ |++++.+ .|.+++|+ ..+
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~t~fiL~t~~~~~l------LpTI~SRC-q~~ 162 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMNE-----------SASNALLKTLEEPAPNCLFLLVTHNQKRL------LPTIVSRC-QQW 162 (319)
T ss_pred hhCcccCCceEEEecchhhhCH-----------HHHHHHHHHhcCCCCCeEEEEEECChhhC------hHHHHhcc-eeE
Confidence 1 237999999999987 444999999998 3444444 4334433 68899999 899
Q ss_pred eCCCCCHHHHHHHHHH
Q 011578 376 HFNDFNSEELAKILHI 391 (482)
Q Consensus 376 ~~~~~~~~~~~~il~~ 391 (482)
.|++|+.++..+.+..
T Consensus 163 ~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 163 VVTPPSTAQAMQWLKG 178 (319)
T ss_pred eCCCCCHHHHHHHHHH
Confidence 9999999998887754
No 316
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=3.3e-09 Score=101.84 Aligned_cols=133 Identities=19% Similarity=0.210 Sum_probs=84.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCC------------------CCCeEEeecccc---cccc-cccchhhHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILP------------------TDRVTEVQRTDL---VGEF-VGHTGPKTR 299 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~------------------~~~~~~~~~~~~---~~~~-~g~~~~~~~ 299 (482)
-+..+||+||+|+|||++|+.+|+.+....... ...|+.+.+..- .++. -.-+-..++
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 455699999999999999999999886422111 123444443210 0100 000123345
Q ss_pred HHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC--cEEEEEecCchhHHHHHhcCccccCC
Q 011578 300 RRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--KVVVIFAGYSEPMKRVIASNEGFCRR 370 (482)
Q Consensus 300 ~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~--~~~vi~~~~~~~~~~~~~~~~~l~~R 370 (482)
++.+.+ ...|++||+++.+.+..+ +.|++.+++. ..++|++|+... .+ .|.+.+|
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~-----------naLLk~LEep~~~~~~Ilvth~~~--~l---l~ti~SR 163 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNLQAA-----------NSLLKVLEEPPPQVVFLLVSHAAD--KV---LPTIKSR 163 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCHHHH-----------HHHHHHHHhCcCCCEEEEEeCChH--hC---hHHHHHH
Confidence 554332 337999999999988444 8888888762 344444433322 22 6778889
Q ss_pred CcceeeCCCCCHHHHHHHHHH
Q 011578 371 VTKFFHFNDFNSEELAKILHI 391 (482)
Q Consensus 371 ~~~~i~~~~~~~~~~~~il~~ 391 (482)
+ ..+.|++|+.++..+.+..
T Consensus 164 c-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 164 C-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred h-hhhcCCCCCHHHHHHHHHh
Confidence 8 9999999999998877754
No 317
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.89 E-value=4.2e-08 Score=97.57 Aligned_cols=246 Identities=18% Similarity=0.248 Sum_probs=143.2
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeE----
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT---- 279 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~---- 279 (482)
.+..|.|.+.+|.-|.-.+ ..-.++..+.........++++.|.||||||-+-++.+..+.. ++-.++...
T Consensus 343 l~PsIyGhe~VK~GilL~L----fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR-~vYtsGkaSSaAG 417 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSL----FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPR-SVYTSGKASSAAG 417 (764)
T ss_pred hCccccchHHHHhhHHHHH----hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCc-ceEecCccccccc
Confidence 3456889999888776321 1111222223334455678999999999999999999987753 111111111
Q ss_pred ---EeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcE----------
Q 011578 280 ---EVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---------- 346 (482)
Q Consensus 280 ---~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------- 346 (482)
.+....-.+.|.-+. .++..|..||--|||+|++.-+.| -++.++|+...+
T Consensus 418 LTaaVvkD~esgdf~iEA-----GALmLADnGICCIDEFDKMd~~dq-----------vAihEAMEQQtISIaKAGv~aT 481 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEA-----GALMLADNGICCIDEFDKMDVKDQ-----------VAIHEAMEQQTISIAKAGVVAT 481 (764)
T ss_pred ceEEEEecCCCCceeeec-----CcEEEccCceEEechhcccChHhH-----------HHHHHHHHhheehheecceEEe
Confidence 111111112222111 234456789999999999987666 678888876332
Q ss_pred -----EEEEecCc--------hhHHHHHhcCccccCCCcceee-CCCCCHHHHHHHHHHHHhccccccc-----------
Q 011578 347 -----VVIFAGYS--------EPMKRVIASNEGFCRRVTKFFH-FNDFNSEELAKILHIKMNNQTEDSL----------- 401 (482)
Q Consensus 347 -----~vi~~~~~--------~~~~~~~~~~~~l~~R~~~~i~-~~~~~~~~~~~il~~~l~~~~~~~~----------- 401 (482)
-|++|++| ..+..-+...+++.+|||..|- ++.+++..=..|.++.+..+.....
T Consensus 482 LnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e 561 (764)
T KOG0480|consen 482 LNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLE 561 (764)
T ss_pred ecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHH
Confidence 23333221 1122233445899999987654 5888876666666666554321100
Q ss_pred ------cccccccCcccHHHHHHHHHHHhhHhhcc---------ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhccc
Q 011578 402 ------LYGFKLHSSCSMDAIAALIEKETTEKQRR---------EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTIT 466 (482)
Q Consensus 402 ------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~ 466 (482)
.|.-.+.|.++.++-+.+.+.|..-+.+. +...|+|..++..+...+ |+ +-...+|
T Consensus 562 ~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~A--r~-------~~~devt 632 (764)
T KOG0480|consen 562 QVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARA--RV-------ECRDEVT 632 (764)
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHH--hh-------hhhhhcc
Confidence 01114455666666666666665444333 334588888877654443 22 2234689
Q ss_pred HHHHHHHHHHHHh
Q 011578 467 LEDLEAGLKLLLR 479 (482)
Q Consensus 467 ~~d~~~al~~~~~ 479 (482)
.+|.++|+.-++.
T Consensus 633 ~~~v~ea~eLlk~ 645 (764)
T KOG0480|consen 633 KEDVEEAVELLKK 645 (764)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887764
No 318
>PRK08116 hypothetical protein; Validated
Probab=98.88 E-value=2.9e-08 Score=92.96 Aligned_cols=133 Identities=16% Similarity=0.166 Sum_probs=74.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccccc----ccchhhHHHHHHhc-CCcEEEEecccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFV----GHTGPKTRRRIKEA-EGGILFVDEAYR 317 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~a-~~~vl~iDE~d~ 317 (482)
..+++|+||||||||.||.++++.+...+ .+++.++.+++...+. +.......++++.. ...+|+|||+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~----~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~ 189 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG----VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGA 189 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccC
Confidence 35799999999999999999999986533 3567777766554432 11111122334332 347999999964
Q ss_pred cccCCCCCCChhHHHHHHHHHhhhc----CCcEEEEEecCchhHHHHHhcCccccCCC---cceeeCCCCCHHHHHHHHH
Q 011578 318 LIPMQKADDKDYGIEALEEIMSVMD----GGKVVVIFAGYSEPMKRVIASNEGFCRRV---TKFFHFNDFNSEELAKILH 390 (482)
Q Consensus 318 l~~~~~~~~~~~~~~~~~~ll~~l~----~~~~~vi~~~~~~~~~~~~~~~~~l~~R~---~~~i~~~~~~~~~~~~il~ 390 (482)
-.. ++... ..|...++ .+..+||.++.+ +.+.....+..+.+|+ ...|.|+.+|. |.++.+
T Consensus 190 e~~------t~~~~---~~l~~iin~r~~~~~~~IiTsN~~-~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~--R~~~~~ 257 (268)
T PRK08116 190 ERD------TEWAR---EKVYNIIDSRYRKGLPTIVTTNLS-LEELKNQYGKRIYDRILEMCTPVENEGKSY--RKEIAK 257 (268)
T ss_pred CCC------CHHHH---HHHHHHHHHHHHCCCCEEEECCCC-HHHHHHHHhHHHHHHHHHcCEEEEeeCcCh--hHHHHH
Confidence 321 22222 33344433 345555555433 2221111256667775 34567776663 444443
Q ss_pred H
Q 011578 391 I 391 (482)
Q Consensus 391 ~ 391 (482)
.
T Consensus 258 e 258 (268)
T PRK08116 258 E 258 (268)
T ss_pred H
Confidence 3
No 319
>PF13606 Ank_3: Ankyrin repeat
Probab=98.88 E-value=2.3e-09 Score=63.61 Aligned_cols=28 Identities=57% Similarity=0.829 Sum_probs=18.6
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCCCcc
Q 011578 85 GETPLHMAAKNGCNEAAKLLLAHGAFIE 112 (482)
Q Consensus 85 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~ 112 (482)
|+||||+||..|+.+++++|+++|+|+|
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 5666666666666666666666666665
No 320
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.87 E-value=6.6e-10 Score=112.09 Aligned_cols=98 Identities=26% Similarity=0.390 Sum_probs=73.6
Q ss_pred CCHHHHHHHHhh-CCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCc-CCCChHHHHHHHcCCHHHH
Q 011578 24 GDLLAFQRLLRE-NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAA 101 (482)
Q Consensus 24 g~~~~v~~ll~~-~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~tpLh~A~~~g~~~~v 101 (482)
+....++-++.+ ++...|..|.. |+|+||+|+..|..++++.||+ .|++++.+| ..|+||||.|...|+++|+
T Consensus 28 s~~Nqlk~F~~k~c~n~anikD~~-GR~alH~~~S~~k~~~l~wLlq----hGidv~vqD~ESG~taLHRaiyyG~idca 102 (1267)
T KOG0783|consen 28 SEPNQLKGFSEKSCQNLANIKDRY-GRTALHIAVSENKNSFLRWLLQ----HGIDVFVQDEESGYTALHRAIYYGNIDCA 102 (1267)
T ss_pred CChhHHHHHHHHhhhhhhhHHHhh-ccceeeeeeccchhHHHHHHHh----cCceeeeccccccchHhhHhhhhchHHHH
Confidence 333345555543 34445777765 8888888888888888888888 477788777 4688888888888888888
Q ss_pred HHHHhCCCCccccccCCCcceeeeh
Q 011578 102 KLLLAHGAFIEAKANNGMTPLHLSV 126 (482)
Q Consensus 102 ~~Ll~~ga~~~~~d~~g~tpLh~A~ 126 (482)
-+|+.+|+....+|+.|.+||.+-+
T Consensus 103 ~lLL~~g~SL~i~Dkeglsplq~~~ 127 (1267)
T KOG0783|consen 103 SLLLSKGRSLRIKDKEGLSPLQFLS 127 (1267)
T ss_pred HHHHhcCCceEEecccCCCHHHHHh
Confidence 8888888888888888888887666
No 321
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.86 E-value=4.4e-08 Score=89.24 Aligned_cols=123 Identities=24% Similarity=0.412 Sum_probs=78.6
Q ss_pred HHHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC
Q 011578 198 MDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 276 (482)
Q Consensus 198 ~~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~ 276 (482)
.+.++..++ .+.||+-+++.+...+.... ..+ ....|..+-|+|+|||||+.+++.||+.+...|..+.
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~--------~n~-~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~- 142 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQHLAKQLVVNALKSHW--------ANP-NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSP- 142 (344)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHh--------cCC-CCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccch-
Confidence 445555555 48999999998887655442 111 1345566779999999999999999999987654432
Q ss_pred CeEE--eecccc-----cccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhc
Q 011578 277 RVTE--VQRTDL-----VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 342 (482)
Q Consensus 277 ~~~~--~~~~~~-----~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~ 342 (482)
++. +...++ +..|--+-...+++.......+++++||+|+|.+ .++++|-..+|
T Consensus 143 -~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~-----------gLld~lkpfLd 203 (344)
T KOG2170|consen 143 -FVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP-----------GLLDVLKPFLD 203 (344)
T ss_pred -hHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH-----------hHHHHHhhhhc
Confidence 211 111111 1222222333445555555679999999999987 56666666666
No 322
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=9.1e-08 Score=92.25 Aligned_cols=163 Identities=17% Similarity=0.237 Sum_probs=103.2
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
.+.|.+.-...+++|+... +....+.++.+.|.||||||..-..+-..+...+.. ...+.+++.++
T Consensus 151 ~l~gRe~e~~~v~~F~~~h------------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~--~~~v~inc~sl 216 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLH------------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS--PVTVYINCTSL 216 (529)
T ss_pred CccchHHHHHHHHHHHHhh------------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc--ceeEEEeeccc
Confidence 4677777777777775433 334577889999999999999888666555432221 13467777653
Q ss_pred cc----------cc----ccc-chhhHHHHHHh----cC-CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhc----
Q 011578 287 VG----------EF----VGH-TGPKTRRRIKE----AE-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD---- 342 (482)
Q Consensus 287 ~~----------~~----~g~-~~~~~~~~~~~----a~-~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~---- 342 (482)
.. .+ +|. ++......|++ .. --|+++||+|.|..+.+ ..|++.++
T Consensus 217 ~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~-----------~vLy~lFewp~l 285 (529)
T KOG2227|consen 217 TEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ-----------TVLYTLFEWPKL 285 (529)
T ss_pred cchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc-----------ceeeeehhcccC
Confidence 21 11 222 22222344433 22 36888999999997666 34444443
Q ss_pred -CCcEEEEE-ecCchhHHHHHhcCccccCCC---cceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 343 -GGKVVVIF-AGYSEPMKRVIASNEGFCRRV---TKFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 343 -~~~~~vi~-~~~~~~~~~~~~~~~~l~~R~---~~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
..++++|+ |+.-+..+.+ -|.|..|. +..+.|++|+.+++.+|+...+....
T Consensus 286 p~sr~iLiGiANslDlTdR~---LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~ 342 (529)
T KOG2227|consen 286 PNSRIILIGIANSLDLTDRF---LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES 342 (529)
T ss_pred CcceeeeeeehhhhhHHHHH---hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc
Confidence 24455554 5444444544 34454433 78999999999999999999998865
No 323
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.82 E-value=3.3e-08 Score=99.08 Aligned_cols=241 Identities=20% Similarity=0.242 Sum_probs=125.3
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCe-------E
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV-------T 279 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~-------~ 279 (482)
+|.|++++|+-+.-.+- .-.+++....-......++||+|.||||||-+-+.+++.+.. |...++.= .
T Consensus 430 sIye~edvKkglLLqLf----GGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pR-g~yTSGkGsSavGLTa 504 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLF----GGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPR-GVYTSGKGSSAVGLTA 504 (804)
T ss_pred hhhcccchhhhHHHHHh----cCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCc-ceeecCCccchhccee
Confidence 46777777776653210 001111111101223468999999999999999999997753 22111110 0
Q ss_pred EeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC---------------
Q 011578 280 EVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------------- 344 (482)
Q Consensus 280 ~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~--------------- 344 (482)
.+....-..+++=+++ ++-.+.+||--|||+|++..+.+ +.|.+.|+..
T Consensus 505 yVtrd~dtkqlVLesG-----ALVLSD~GiCCIDEFDKM~dStr-----------SvLhEvMEQQTvSIAKAGII~sLNA 568 (804)
T KOG0478|consen 505 YVTKDPDTRQLVLESG-----ALVLSDNGICCIDEFDKMSDSTR-----------SVLHEVMEQQTLSIAKAGIIASLNA 568 (804)
T ss_pred eEEecCccceeeeecC-----cEEEcCCceEEchhhhhhhHHHH-----------HHHHHHHHHhhhhHhhcceeeeccc
Confidence 0000001111221121 22345679999999999976544 5566666541
Q ss_pred -cEEEEEec------C-chhHHHHHhcCccccCCCcceee-CCCCCHHHHHHHHHHHHhcccc----------------c
Q 011578 345 -KVVVIFAG------Y-SEPMKRVIASNEGFCRRVTKFFH-FNDFNSEELAKILHIKMNNQTE----------------D 399 (482)
Q Consensus 345 -~~~vi~~~------~-~~~~~~~~~~~~~l~~R~~~~i~-~~~~~~~~~~~il~~~l~~~~~----------------~ 399 (482)
.-++.+|+ + ...+.+-+...|.|++|||.++- ++.+|...=++|..+...-..+ .
T Consensus 569 R~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~ 648 (804)
T KOG0478|consen 569 RCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRD 648 (804)
T ss_pred cceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHH
Confidence 22444444 1 11223344456999999987665 5777764222222222111110 0
Q ss_pred cccccc-cccCcccHHHHHHHHHHHhhHhhccccCc------chhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHH
Q 011578 400 SLLYGF-KLHSSCSMDAIAALIEKETTEKQRREMNG------GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA 472 (482)
Q Consensus 400 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~ 472 (482)
...|.. .+.+.+++++...+.+.+..-+....+++ |++..++..+...+..|.. ..+...|+++
T Consensus 649 yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsEahak~r~s---------~~ve~~dV~e 719 (804)
T KOG0478|consen 649 YIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSEAHAKMRLS---------NRVEEIDVEE 719 (804)
T ss_pred HHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhhcc---------cccchhhHHH
Confidence 001122 34677788888888888775544433333 4555555444444333332 3566677777
Q ss_pred HHHHH
Q 011578 473 GLKLL 477 (482)
Q Consensus 473 al~~~ 477 (482)
|+.-+
T Consensus 720 A~~l~ 724 (804)
T KOG0478|consen 720 AVRLL 724 (804)
T ss_pred HHHHH
Confidence 66543
No 324
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.80 E-value=6.7e-09 Score=63.56 Aligned_cols=31 Identities=55% Similarity=0.811 Sum_probs=20.9
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCCCccccc
Q 011578 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKA 115 (482)
Q Consensus 85 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d 115 (482)
|+||||+|+..|+.+++++|+++|++++.+|
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 5666666666666666666666666666655
No 325
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.80 E-value=2.2e-07 Score=84.43 Aligned_cols=131 Identities=18% Similarity=0.210 Sum_probs=77.0
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchh-----HH--HHHhcCccccCCCcceeeCCC
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEP-----MK--RVIASNEGFCRRVTKFFHFND 379 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~-----~~--~~~~~~~~l~~R~~~~i~~~~ 379 (482)
|||||||++.|.- +-.+-|-.++++ -..+++++|+.-- .+ ...-.+-.|++|+ .+|...+
T Consensus 290 GVLFIDEvHMLDI-----------EcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~-lII~t~p 357 (454)
T KOG2680|consen 290 GVLFIDEVHMLDI-----------ECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRM-LIISTQP 357 (454)
T ss_pred ceEEEeeehhhhh-----------HHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhh-heeeccc
Confidence 8999999988865 222444455554 2334444442110 00 0000123467787 8899999
Q ss_pred CCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCCh
Q 011578 380 FNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDT 459 (482)
Q Consensus 380 ~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~ 459 (482)
++.++..+||+..+.++. ...+++++..++.-.. ....|...+++..|......|=
T Consensus 358 y~~~d~~~IL~iRc~EEd-----------v~m~~~A~d~Lt~i~~------~tsLRYai~Lit~a~~~~~krk------- 413 (454)
T KOG2680|consen 358 YTEEDIKKILRIRCQEED-----------VEMNPDALDLLTKIGE------ATSLRYAIHLITAASLVCLKRK------- 413 (454)
T ss_pred CcHHHHHHHHHhhhhhhc-----------cccCHHHHHHHHHhhh------hhhHHHHHHHHHHHHHHHHHhc-------
Confidence 999999999999888753 4567788888877543 2233444555555544433331
Q ss_pred hhhhcccHHHHHHHHHH
Q 011578 460 DELRTITLEDLEAGLKL 476 (482)
Q Consensus 460 ~~~~~i~~~d~~~al~~ 476 (482)
...++.+|+..++.-
T Consensus 414 --~~~v~~~di~r~y~L 428 (454)
T KOG2680|consen 414 --GKVVEVDDIERVYRL 428 (454)
T ss_pred --CceeehhHHHHHHHH
Confidence 134566666666543
No 326
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.80 E-value=9.1e-09 Score=99.77 Aligned_cols=119 Identities=29% Similarity=0.302 Sum_probs=95.2
Q ss_pred hHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcC
Q 011578 17 IHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG 96 (482)
Q Consensus 17 l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g 96 (482)
+..|+..+++-.+++.-..+++.+ ..+.+ ..|.||||+..|+-++|+|+|+++. ...++..|..|.|+||-|+..+
T Consensus 870 il~av~~~D~~klqE~h~~gg~ll-~~~~~-~~sllh~a~~tg~~eivkyildh~p--~elld~~de~get~lhkaa~~~ 945 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQETHLNGGSLL-IQGPD-HCSLLHYAAKTGNGEIVKYILDHGP--SELLDMADETGETALHKAACQR 945 (1004)
T ss_pred HHHHHHhccHHHHHHHHhcCCceE-eeCcc-hhhHHHHHHhcCChHHHHHHHhcCC--HHHHHHHhhhhhHHHHHHHHhc
Confidence 677888888777777665555544 44444 7899999999999999999998753 4556777788999999999888
Q ss_pred CHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhh
Q 011578 97 CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 143 (482)
Q Consensus 97 ~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~ 143 (482)
+..++++|++.|+.+...|..|.||-..|- ..|+.+...||-.
T Consensus 946 ~r~vc~~lvdagasl~ktd~kg~tp~eraq----qa~d~dlaayle~ 988 (1004)
T KOG0782|consen 946 NRAVCQLLVDAGASLRKTDSKGKTPQERAQ----QAGDPDLAAYLES 988 (1004)
T ss_pred chHHHHHHHhcchhheecccCCCChHHHHH----hcCCchHHHHHhh
Confidence 888999999999998888999999988888 7888888888753
No 327
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.77 E-value=4.9e-09 Score=105.98 Aligned_cols=84 Identities=30% Similarity=0.424 Sum_probs=77.7
Q ss_pred ccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCcccccc-CCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCC
Q 011578 77 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG 155 (482)
Q Consensus 77 ~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~-~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g 155 (482)
-.|.+|..|+|+||+|+..+...++++|+++|+|++.+|. .|+||||.|. ..|+.+++.+||.+|+...++|++|
T Consensus 44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRai----yyG~idca~lLL~~g~SL~i~Dkeg 119 (1267)
T KOG0783|consen 44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAI----YYGNIDCASLLLSKGRSLRIKDKEG 119 (1267)
T ss_pred hhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhh----hhchHHHHHHHHhcCCceEEecccC
Confidence 3788999999999999999999999999999999999986 5999999999 6789999999999999999999999
Q ss_pred CChhhhhhc
Q 011578 156 KTPLDHLSN 164 (482)
Q Consensus 156 ~tpl~~~a~ 164 (482)
.+||...+.
T Consensus 120 lsplq~~~r 128 (1267)
T KOG0783|consen 120 LSPLQFLSR 128 (1267)
T ss_pred CCHHHHHhh
Confidence 999976665
No 328
>PF13173 AAA_14: AAA domain
Probab=98.75 E-value=5.2e-08 Score=80.83 Aligned_cols=120 Identities=19% Similarity=0.256 Sum_probs=72.8
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhc---CCcEEEEeccccccc
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIP 320 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~ 320 (482)
..++++||.|+|||++++.+++.+. ....++.++..+.......... +.+.+.+. ...+||||||+.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-----~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~~ 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-----PPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLPD 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-----ccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhcc
Confidence 4588999999999999999998775 2225566666554322111000 22333222 458999999988742
Q ss_pred CCCCCCChhHHHHHHHHHhhhcCC-cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHH
Q 011578 321 MQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEE 384 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~l~~~-~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~ 384 (482)
....+-...+.+ .+.++++++......- .....+.+|. ..+++.+++-.|
T Consensus 76 ------------~~~~lk~l~d~~~~~~ii~tgS~~~~l~~-~~~~~l~gr~-~~~~l~Plsf~E 126 (128)
T PF13173_consen 76 ------------WEDALKFLVDNGPNIKIILTGSSSSLLSK-DIAESLAGRV-IEIELYPLSFRE 126 (128)
T ss_pred ------------HHHHHHHHHHhccCceEEEEccchHHHhh-cccccCCCeE-EEEEECCCCHHH
Confidence 123333333443 5666666655544321 2356778887 678888888765
No 329
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.75 E-value=8.4e-09 Score=98.16 Aligned_cols=91 Identities=24% Similarity=0.237 Sum_probs=72.2
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHh-CCCCccccccCCCcceeeeh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMTPLHLSV 126 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpLh~A~ 126 (482)
+.-++++|+..|.+..++-+.- .+.+++.+|.+.+|+||.||..|+++++++|++ .+.+++.+|.+|+|||.-|.
T Consensus 506 ~~i~~~~aa~~GD~~alrRf~l----~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~ 581 (622)
T KOG0506|consen 506 TVINVMYAAKNGDLSALRRFAL----QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK 581 (622)
T ss_pred chhhhhhhhhcCCHHHHHHHHH----hcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence 6677888888888877776655 477888888888888888888888888888887 46888888888888888888
Q ss_pred hhccCCChHHHHHHHhhCCC
Q 011578 127 WYSIRSEDYATVKTLLEYNA 146 (482)
Q Consensus 127 ~~~~~~~~~~~v~~Ll~~ga 146 (482)
..+|.+++++|-++-.
T Consensus 582 ----~F~h~~v~k~L~~~~~ 597 (622)
T KOG0506|consen 582 ----HFKHKEVVKLLEEAQY 597 (622)
T ss_pred ----hcCcHHHHHHHHHHhc
Confidence 7778888888876544
No 330
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.73 E-value=9.6e-08 Score=87.62 Aligned_cols=100 Identities=17% Similarity=0.281 Sum_probs=61.1
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccc---cchhhHHHHHHhc-CCcEEEEecccccc
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG---HTGPKTRRRIKEA-EGGILFVDEAYRLI 319 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~a-~~~vl~iDE~d~l~ 319 (482)
.+++|+||||||||.++.++|+.+...+. .++.++.+++...+.+ .......++++.. ...+|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~----~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~ 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGK----SVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQT 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCC----eEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCC
Confidence 48999999999999999999999876442 5566666666543221 1111122334332 45799999998764
Q ss_pred cCCCCCCChhHHHHHHHHHhhh-cCCcEEEEEecC
Q 011578 320 PMQKADDKDYGIEALEEIMSVM-DGGKVVVIFAGY 353 (482)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ll~~l-~~~~~~vi~~~~ 353 (482)
. ++....++..++..- +....++|.++.
T Consensus 176 ~------s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 176 E------SRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred C------CHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 2 233344445444432 234555555543
No 331
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.71 E-value=4.1e-08 Score=93.97 Aligned_cols=109 Identities=28% Similarity=0.359 Sum_probs=89.1
Q ss_pred cCcCCCChH------HHHHHHcCCHHHHHHHHhCCCCcccccc-CCCcceeeehhhccCCChHHHHHHHhhCCCCccccC
Q 011578 80 AQNMYGETP------LHMAAKNGCNEAAKLLLAHGAFIEAKAN-NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 152 (482)
Q Consensus 80 ~~~~~g~tp------Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~-~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d 152 (482)
.+|.+|.|. ||..++.|+.++.--|+..||++|.-+. .|.||||.|+ +.|...-+++|+-+|||++..|
T Consensus 122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAA----k~Gq~~Q~ElL~vYGAD~~a~d 197 (669)
T KOG0818|consen 122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAA----KAGQILQAELLAVYGADPGAQD 197 (669)
T ss_pred CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHH----hccchhhhhHHhhccCCCCCCC
Confidence 456566554 8999999999999999999999998664 6999999999 8999999999999999999999
Q ss_pred CCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHhhHhhhhh
Q 011578 153 NEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSE 193 (482)
Q Consensus 153 ~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~~~~~~~~ 193 (482)
.+|.||+ .+|..+|+.++.+-|.+...+...+-.+..|..
T Consensus 198 ~~GmtP~-~~AR~~gH~~laeRl~e~~y~vtDR~~f~lcgr 237 (669)
T KOG0818|consen 198 SSGMTPV-DYARQGGHHELAERLVEIQYELTDRLAFYLCGR 237 (669)
T ss_pred CCCCcHH-HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999 667777788877777776666665655555533
No 332
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.70 E-value=8.7e-07 Score=81.68 Aligned_cols=163 Identities=18% Similarity=0.276 Sum_probs=82.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe-ecc------cc-------------ccc-c----------
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV-QRT------DL-------------VGE-F---------- 290 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~-~~~------~~-------------~~~-~---------- 290 (482)
+...++++||.|+|||++.+.+.+.+...+. ...++.. ... .. ... .
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELKEKGY--KVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISK 96 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT--EE--CCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEEC
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC--cEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhh
Confidence 4568999999999999999999997732111 0000000 000 00 000 0
Q ss_pred --cccchhhHHHHHHh----cCCcEEEEecccccc-cCCCCCCChhHHHHHHHHHhhhc----CCcEEEEEecCch-hHH
Q 011578 291 --VGHTGPKTRRRIKE----AEGGILFVDEAYRLI-PMQKADDKDYGIEALEEIMSVMD----GGKVVVIFAGYSE-PMK 358 (482)
Q Consensus 291 --~g~~~~~~~~~~~~----a~~~vl~iDE~d~l~-~~~~~~~~~~~~~~~~~ll~~l~----~~~~~vi~~~~~~-~~~ 358 (482)
.......+..+++. ....||+|||++.+. .... .. ..+..|...++ ...+.+|++++.. .+.
T Consensus 97 ~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~---~~---~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 97 DLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE---DK---DFLKSLRSLLDSLLSQQNVSIVITGSSDSLME 170 (234)
T ss_dssp TS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT---TH---HHHHHHHHHHHH----TTEEEEEEESSHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc---hH---HHHHHHHHHHhhccccCCceEEEECCchHHHH
Confidence 00112223333332 234899999999998 3221 11 33333444333 3455455554443 333
Q ss_pred HHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHH
Q 011578 359 RVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 423 (482)
Q Consensus 359 ~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (482)
.+....+++..|+.. +.+++++.++..++++..+.+. . .+ ..+++.+..+..-+
T Consensus 171 ~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~-------~~--~~~~~~~~~i~~~~ 224 (234)
T PF01637_consen 171 EFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-I-------KL--PFSDEDIEEIYSLT 224 (234)
T ss_dssp HTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC----------------HHHHHHHHHHH
T ss_pred HhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-h-------cc--cCCHHHHHHHHHHh
Confidence 444556778889966 9999999999999999987753 1 11 23667777766654
No 333
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.69 E-value=2.6e-08 Score=97.07 Aligned_cols=94 Identities=23% Similarity=0.284 Sum_probs=76.6
Q ss_pred HHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhcc
Q 011578 51 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSI 130 (482)
Q Consensus 51 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~ 130 (482)
-|.-|+...++..+-+||.+|.....+-...+.+|+|+||+||..|++.+.++|+=+|+|+..+|.+|+|+|.||-
T Consensus 627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar---- 702 (749)
T KOG0705|consen 627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYAR---- 702 (749)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHh----
Confidence 3556677777788888888776555555556677889999999999999999999999999999999999999888
Q ss_pred CCChHHHHHHHhhCCCCc
Q 011578 131 RSEDYATVKTLLEYNADC 148 (482)
Q Consensus 131 ~~~~~~~v~~Ll~~gad~ 148 (482)
+.|..+++..|+++|+..
T Consensus 703 ~a~sqec~d~llq~gcp~ 720 (749)
T KOG0705|consen 703 QAGSQECIDVLLQYGCPD 720 (749)
T ss_pred hcccHHHHHHHHHcCCCc
Confidence 888899999999988753
No 334
>PRK12377 putative replication protein; Provisional
Probab=98.69 E-value=1.1e-07 Score=87.60 Aligned_cols=73 Identities=26% Similarity=0.368 Sum_probs=47.6
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccccccc--chhhHHHHHHhc-CCcEEEEecccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH--TGPKTRRRIKEA-EGGILFVDEAYRLI 319 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~a-~~~vl~iDE~d~l~ 319 (482)
..+++|+||||||||.||.++++.+...+. .++.++..++...+-.. ......+.++.. ...+|+|||++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~----~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGR----SVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQR 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC----CeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCC
Confidence 358999999999999999999999975443 44556666655432110 011122344433 44899999997653
No 335
>PRK08181 transposase; Validated
Probab=98.69 E-value=8.5e-08 Score=89.33 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=49.8
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccc-cchhhHHHHHHhc-CCcEEEEeccccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG-HTGPKTRRRIKEA-EGGILFVDEAYRLIP 320 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~a-~~~vl~iDE~d~l~~ 320 (482)
..+++|+||||||||.+|.++++.+...|. .++.++..++...+.. .......+.++.. ...+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~----~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGW----RVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTK 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCC----ceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccC
Confidence 457999999999999999999998865443 4555666666554311 1112233344432 447999999987754
No 336
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=1.3e-07 Score=88.31 Aligned_cols=119 Identities=16% Similarity=0.148 Sum_probs=74.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCC---------CCCCeEEeecccccccccccchhhHHHHHHh-------c
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------A 305 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a 305 (482)
-+..+||+||+|+||+++|.++|+.+...... ....+..+.+.. .++.+ +-..++++.+. +
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~I--~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRLH--SIETPRAIKKQIWIHPYES 94 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCcC--cHHHHHHHHHHHhhCccCC
Confidence 45568899999999999999999988642100 011122221110 00111 12233444332 2
Q ss_pred CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEE-ecCchhHHHHHhcCccccCCCcceeeCCCCC
Q 011578 306 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF-AGYSEPMKRVIASNEGFCRRVTKFFHFNDFN 381 (482)
Q Consensus 306 ~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~ 381 (482)
...|++||++|.+... +.|.||..+|+ ..+++|+ +++++.+ .|.+++|+ ..+.|+++.
T Consensus 95 ~~kv~ii~~ad~mt~~-----------AaNaLLK~LEEPp~~~~fiL~~~~~~~l------l~TI~SRc-q~~~~~~~~ 155 (290)
T PRK05917 95 PYKIYIIHEADRMTLD-----------AISAFLKVLEDPPQHGVIILTSAKPQRL------PPTIRSRS-LSIHIPMEE 155 (290)
T ss_pred CceEEEEechhhcCHH-----------HHHHHHHHhhcCCCCeEEEEEeCChhhC------cHHHHhcc-eEEEccchh
Confidence 2379999999999984 44999999997 3444444 4333433 68899999 888888654
No 337
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.65 E-value=2.7e-08 Score=96.40 Aligned_cols=86 Identities=23% Similarity=0.371 Sum_probs=43.4
Q ss_pred HhHHHHHcCCHHHHHHHHhh-CCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHH
Q 011578 16 TIHGCAQSGDLLAFQRLLRE-NPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK 94 (482)
Q Consensus 16 ~l~~a~~~g~~~~v~~ll~~-~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~ 94 (482)
|+|+++...+.+.+...+.. -...++..|.. |.||||+|+..|+...++.|+. .++++..+|+.|++|||-|+.
T Consensus 23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~-g~TpLhlAV~Lg~~~~a~~Ll~----a~Adv~~kN~~gWs~L~EAv~ 97 (560)
T KOG0522|consen 23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPP-GRTPLHLAVRLGHVEAARILLS----AGADVSIKNNEGWSPLHEAVS 97 (560)
T ss_pred ccchhhhccchhhHHHHHhhhhhceeccccCC-CCccHHHHHHhcCHHHHHHHHh----cCCCccccccccccHHHHHHH
Confidence 35555555555444443322 22333444444 5555555555555555555555 345555555555555555555
Q ss_pred cCCHHHHHHHHh
Q 011578 95 NGCNEAAKLLLA 106 (482)
Q Consensus 95 ~g~~~~v~~Ll~ 106 (482)
.|+..++..++.
T Consensus 98 ~g~~q~i~~vlr 109 (560)
T KOG0522|consen 98 TGNEQIITEVLR 109 (560)
T ss_pred cCCHHHHHHHHH
Confidence 555554444433
No 338
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.65 E-value=4e-08 Score=93.62 Aligned_cols=95 Identities=26% Similarity=0.224 Sum_probs=85.5
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhC-CCCccccCCCCCChhh
Q 011578 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-NADCSAKDNEGKTPLD 160 (482)
Q Consensus 82 ~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpl~ 160 (482)
...+..++++|++.|.+..++-+.-.|.|++.+|.+.+|+||.|+ ..|+.+++++|++. +.|++.+|..|+|||
T Consensus 503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAA----aEG~v~v~kfl~~~~kv~~~~kDRw~rtPl- 577 (622)
T KOG0506|consen 503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAA----AEGHVEVVKFLLNACKVDPDPKDRWGRTPL- 577 (622)
T ss_pred cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeec----ccCceeHHHHHHHHHcCCCChhhccCCCcc-
Confidence 456678899999999999999999999999999999999999999 99999999999965 999999999999999
Q ss_pred hhhcCCCChHHHHHHHhhhHH
Q 011578 161 HLSNGPGSAKLRELLLWHSEE 181 (482)
Q Consensus 161 ~~a~~~~~~~~~~lL~~~~~~ 181 (482)
--|..-++.+++++|.++...
T Consensus 578 DdA~~F~h~~v~k~L~~~~~~ 598 (622)
T KOG0506|consen 578 DDAKHFKHKEVVKLLEEAQYP 598 (622)
T ss_pred hHhHhcCcHHHHHHHHHHhcc
Confidence 556667888999999876543
No 339
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.64 E-value=1e-07 Score=91.35 Aligned_cols=86 Identities=31% Similarity=0.334 Sum_probs=59.3
Q ss_pred HHHHHHhCCcHHHHHHHHcCCCCCCcccccCc-CCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhc
Q 011578 51 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 129 (482)
Q Consensus 51 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~ 129 (482)
-||..++.|+.+..--||. .|+++|..+ ..|.||||.|++.|+..-+++|+-+|||+++.|.+|+||+.+|-
T Consensus 136 QLhasvRt~nlet~LRll~----lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR--- 208 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLS----LGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYAR--- 208 (669)
T ss_pred HHHHHhhcccHHHHHHHHH----cccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHH---
Confidence 4777777777665555555 456666555 45777777777777777777777777777777777777777776
Q ss_pred cCCChHHHHHHHhhC
Q 011578 130 IRSEDYATVKTLLEY 144 (482)
Q Consensus 130 ~~~~~~~~v~~Ll~~ 144 (482)
..||.++.+-|++.
T Consensus 209 -~~gH~~laeRl~e~ 222 (669)
T KOG0818|consen 209 -QGGHHELAERLVEI 222 (669)
T ss_pred -hcCchHHHHHHHHH
Confidence 66776666666553
No 340
>PF13606 Ank_3: Ankyrin repeat
Probab=98.64 E-value=3.2e-08 Score=58.67 Aligned_cols=29 Identities=41% Similarity=0.590 Sum_probs=25.1
Q ss_pred CCChHHHHHHhCCcHHHHHHHHcCCCCCCcccc
Q 011578 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELE 79 (482)
Q Consensus 47 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 79 (482)
+|+||||+||..|+.++|++|+++ |+++|
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~----gadvn 29 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEH----GADVN 29 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHc----CCCCC
Confidence 389999999999999999999994 56665
No 341
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=3.4e-07 Score=96.66 Aligned_cols=145 Identities=21% Similarity=0.245 Sum_probs=112.7
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCC---CCCCCeEEeecccc--cccccccchhhHHHHHHhc----CCcEEEEec
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTEVQRTDL--VGEFVGHTGPKTRRRIKEA----EGGILFVDE 314 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~---~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~a----~~~vl~iDE 314 (482)
.+-+|.|.||+|||.++.-+++.+..-.+ .....++.++-..+ ..++-|+.+.+++++.+++ .+.||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 67899999999999999999998864222 22345555555433 3447788888888888753 346999999
Q ss_pred ccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHH
Q 011578 315 AYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIK 392 (482)
Q Consensus 315 ~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 392 (482)
++.+...... .....+.+.|-..+..+.+.+|+|||.+.+...+..+|++.+|| ..+.++.|+.++...|++..
T Consensus 289 lh~lvg~g~~---~~~~d~~nlLkp~L~rg~l~~IGatT~e~Y~k~iekdPalErrw-~l~~v~~pS~~~~~~iL~~l 362 (898)
T KOG1051|consen 289 LHWLVGSGSN---YGAIDAANLLKPLLARGGLWCIGATTLETYRKCIEKDPALERRW-QLVLVPIPSVENLSLILPGL 362 (898)
T ss_pred eeeeecCCCc---chHHHHHHhhHHHHhcCCeEEEecccHHHHHHHHhhCcchhhCc-ceeEeccCcccchhhhhhhh
Confidence 9999875543 22557778888888888899999999888889999999999999 77778999988866777653
No 342
>PF05729 NACHT: NACHT domain
Probab=98.62 E-value=7.5e-07 Score=77.39 Aligned_cols=146 Identities=14% Similarity=0.215 Sum_probs=79.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCC--CCeEEeeccccccc--------c----cccchh----hHHHHHHhcC
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPT--DRVTEVQRTDLVGE--------F----VGHTGP----KTRRRIKEAE 306 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~--~~~~~~~~~~~~~~--------~----~g~~~~----~~~~~~~~a~ 306 (482)
-++++|+||+|||++++.++..+........ .-++.+...+.... . ...... ..........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 3789999999999999999998876443221 11222222221110 0 111111 1122334455
Q ss_pred CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHH
Q 011578 307 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELA 386 (482)
Q Consensus 307 ~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~ 386 (482)
..+|+||-+|.+....+..........+..++..--...+.++.++.+.....+... .... ..+.+++++.+++.
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~----~~~~-~~~~l~~~~~~~~~ 156 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRR----LKQA-QILELEPFSEEDIK 156 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHh----cCCC-cEEEECCCCHHHHH
Confidence 689999999999874432111112233444444311123444444445444322111 1111 57899999999999
Q ss_pred HHHHHHHhc
Q 011578 387 KILHIKMNN 395 (482)
Q Consensus 387 ~il~~~l~~ 395 (482)
++++.+++.
T Consensus 157 ~~~~~~f~~ 165 (166)
T PF05729_consen 157 QYLRKYFSN 165 (166)
T ss_pred HHHHHHhhc
Confidence 999998764
No 343
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.62 E-value=4e-07 Score=87.47 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=48.1
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccc---cchhhHHHHHHhc-CCcEEEEecccccc
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG---HTGPKTRRRIKEA-EGGILFVDEAYRLI 319 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~a-~~~vl~iDE~d~l~ 319 (482)
.+++|+||||||||.||.++|+++...+. .++.++..++...+.. .........++.. .--+|+||++....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~----~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~ 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGK----SVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEK 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCC----eEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCC
Confidence 68999999999999999999999875442 5666666666544311 1111111123333 33799999997764
Q ss_pred c
Q 011578 320 P 320 (482)
Q Consensus 320 ~ 320 (482)
.
T Consensus 260 ~ 260 (329)
T PRK06835 260 I 260 (329)
T ss_pred C
Confidence 3
No 344
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.58 E-value=6.8e-08 Score=59.03 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=29.1
Q ss_pred CCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcC
Q 011578 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM 83 (482)
Q Consensus 47 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 83 (482)
+|+||||+|+..|+.+++++|++ .|++++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~----~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLK----HGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHH----TTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHH----CcCCCCCCCC
Confidence 38999999999999999999999 5788887763
No 345
>PRK06526 transposase; Provisional
Probab=98.58 E-value=1.2e-07 Score=87.94 Aligned_cols=75 Identities=28% Similarity=0.337 Sum_probs=47.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccc-cchhhHHHHHHh-cCCcEEEEecccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG-HTGPKTRRRIKE-AEGGILFVDEAYRLI 319 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~-a~~~vl~iDE~d~l~ 319 (482)
...+++|+||||||||.+|.+|+.++...|. .+...+.+++...... .......+.+.. ....+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~----~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGH----RVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCC----chhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCC
Confidence 4568999999999999999999998865443 2333444444333211 011122233333 345799999998875
Q ss_pred c
Q 011578 320 P 320 (482)
Q Consensus 320 ~ 320 (482)
.
T Consensus 173 ~ 173 (254)
T PRK06526 173 F 173 (254)
T ss_pred C
Confidence 4
No 346
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.55 E-value=1.1e-07 Score=86.16 Aligned_cols=93 Identities=24% Similarity=0.402 Sum_probs=69.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-----ccccc-----h-hh-HHHHHHhcCCcE
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----FVGHT-----G-PK-TRRRIKEAEGGI 309 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~-----~-~~-~~~~~~~a~~~v 309 (482)
....+||.||.|.||+.+|+.|...-. ..-..+++|+++++..+.+. .+|+. + .. -..+++.|.++.
T Consensus 207 sr~p~ll~gptgagksflarriyelk~-arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggm 285 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQ-ARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGM 285 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHH-HHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCce
Confidence 456799999999999999999986443 23445779999999987654 45541 1 12 235678889999
Q ss_pred EEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcE
Q 011578 310 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV 346 (482)
Q Consensus 310 l~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 346 (482)
||+|||..|....| .-|+..++++++
T Consensus 286 lfldeigelgadeq-----------amllkaieekrf 311 (531)
T COG4650 286 LFLDEIGELGADEQ-----------AMLLKAIEEKRF 311 (531)
T ss_pred EehHhhhhcCccHH-----------HHHHHHHHhhcc
Confidence 99999999988655 667777776443
No 347
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.53 E-value=1.9e-07 Score=77.83 Aligned_cols=102 Identities=25% Similarity=0.286 Sum_probs=60.6
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCC-CCCCCeEEeecccccc------c---ccc------cchhh----HHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGI-LPTDRVTEVQRTDLVG------E---FVG------HTGPK----TRRRI 302 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~-~~~~~~~~~~~~~~~~------~---~~g------~~~~~----~~~~~ 302 (482)
...++++||||+|||++++.+++.+..... ....+++.+..+.... . .++ .+... +.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 457899999999999999999998853100 0022455555443210 0 111 11222 22233
Q ss_pred HhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 303 KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 303 ~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
+.....+|+|||+|.+. + ...++.|...++...+.+|+++++
T Consensus 84 ~~~~~~~lviDe~~~l~-~---------~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S---------DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T---------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C---------HHHHHHHHHHHhCCCCeEEEEECh
Confidence 33334699999999985 1 367788888888888877777655
No 348
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.52 E-value=1.7e-07 Score=91.08 Aligned_cols=88 Identities=30% Similarity=0.456 Sum_probs=58.8
Q ss_pred hHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhc
Q 011578 50 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 129 (482)
Q Consensus 50 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~ 129 (482)
-|||+++.....+-+..++.. .....++.+|..|+||||+|+..|+.+.++.|+.+||++..+|++||+|||-|+
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~--~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv--- 96 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLA--KVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAV--- 96 (560)
T ss_pred cccchhhhccchhhHHHHHhh--hhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHH---
Confidence 347777777666555554432 134556677777777777777777777777777777777777777777777777
Q ss_pred cCCChHHHHHHHhh
Q 011578 130 IRSEDYATVKTLLE 143 (482)
Q Consensus 130 ~~~~~~~~v~~Ll~ 143 (482)
..|+.+++..++.
T Consensus 97 -~~g~~q~i~~vlr 109 (560)
T KOG0522|consen 97 -STGNEQIITEVLR 109 (560)
T ss_pred -HcCCHHHHHHHHH
Confidence 6666666665553
No 349
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.52 E-value=1.5e-07 Score=91.59 Aligned_cols=100 Identities=28% Similarity=0.343 Sum_probs=88.8
Q ss_pred CCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCC--ccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCcccc
Q 011578 74 DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF--IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 151 (482)
Q Consensus 74 ~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~--~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~ 151 (482)
.|.++-.++.+.+|.||+|+..|+-++|+|++++|.. +++.|..|.|+||-|+ -.++..++++|++.|+..-..
T Consensus 888 ~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa----~~~~r~vc~~lvdagasl~kt 963 (1004)
T KOG0782|consen 888 NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAA----CQRNRAVCQLLVDAGASLRKT 963 (1004)
T ss_pred cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHH----HhcchHHHHHHHhcchhheec
Confidence 4667788888999999999999999999999999954 6788899999999999 788999999999999999999
Q ss_pred CCCCCChhhhhhcCCCChHHHHHHHhh
Q 011578 152 DNEGKTPLDHLSNGPGSAKLRELLLWH 178 (482)
Q Consensus 152 d~~g~tpl~~~a~~~~~~~~~~lL~~~ 178 (482)
|..|.||- .-|...+..++..+|...
T Consensus 964 d~kg~tp~-eraqqa~d~dlaayle~r 989 (1004)
T KOG0782|consen 964 DSKGKTPQ-ERAQQAGDPDLAAYLESR 989 (1004)
T ss_pred ccCCCChH-HHHHhcCCchHHHHHhhh
Confidence 99999998 666777888888887743
No 350
>PRK14700 recombination factor protein RarA; Provisional
Probab=98.46 E-value=4.6e-07 Score=83.80 Aligned_cols=115 Identities=12% Similarity=0.110 Sum_probs=89.9
Q ss_pred HhhhcCCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHH
Q 011578 338 MSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 417 (482)
Q Consensus 338 l~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 417 (482)
|..+++|.+++|+|||.||...+ +|+|++|+ .+|.|.+++.+++.+++++.+..... .+ .....++++++.
T Consensus 1 Lp~vE~G~i~LIGATTENP~f~v---n~ALlSR~-~v~~l~~L~~~di~~il~ral~~~~~----~~-~~~~~i~~~al~ 71 (300)
T PRK14700 1 MPYVESGKIILIGATTENPTYYL---NDALVSRL-FILRLKRLSLVATQKLIEKALSQDEV----LA-KHKFKIDDGLYN 71 (300)
T ss_pred CCCccCCcEEEEeecCCCcccee---cHhhhhhh-heeeecCCCHHHHHHHHHHHHHhhhc----cC-CcCCCcCHHHHH
Confidence 34678999999999999999877 99999999 99999999999999999999976321 11 224568999999
Q ss_pred HHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 418 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
.++... .|++|..-|++|.|.... . . +....||.+++++++++-
T Consensus 72 ~ia~~a-------~GDaR~aLN~LE~a~~~~-----~---~-~~~~~it~~~~~~~~~~~ 115 (300)
T PRK14700 72 AMHNYN-------EGDCRKILNLLERMFLIS-----T---R-GDEIYLNKELFDQAVGET 115 (300)
T ss_pred HHHHhc-------CCHHHHHHHHHHHHHhhc-----c---c-cCCCccCHHHHHHHHhHH
Confidence 999876 688899999999976421 0 0 111248899988887654
No 351
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=1.1e-06 Score=80.33 Aligned_cols=118 Identities=7% Similarity=0.012 Sum_probs=74.5
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeE---------Eeecccccc-----cccccchhhHHHHHH---
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT---------EVQRTDLVG-----EFVGHTGPKTRRRIK--- 303 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~---------~~~~~~~~~-----~~~g~~~~~~~~~~~--- 303 (482)
..+..+||+||+|+||..+|.++|+.+..... .++.- ..+.+++.- .-++ ...++++.+
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~--~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~--id~ir~l~~~l~ 80 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKA--NGFCKTCESCLKILNGKYNDFYLIFDQKNPIK--KEDALSIINKLN 80 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCC--CCCCCCCHHHHHHhcCCCCCEEEecCCcccCC--HHHHHHHHHHHc
Confidence 35677999999999999999999998854221 11110 011111111 1111 122333322
Q ss_pred h-----cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEE-ecCchhHHHHHhcCccccCCCccee
Q 011578 304 E-----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF-AGYSEPMKRVIASNEGFCRRVTKFF 375 (482)
Q Consensus 304 ~-----a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~~~i 375 (482)
. +...|++|+++|++.. .+.|.||..+|+ ...++|+ +.+++.+ .|.+++|+ ..+
T Consensus 81 ~~s~e~~~~KV~II~~ae~m~~-----------~AaNaLLK~LEEPp~~t~fiLit~~~~~l------LpTI~SRC-q~~ 142 (261)
T PRK05818 81 RPSVESNGKKIYIIYGIEKLNK-----------QSANSLLKLIEEPPKNTYGIFTTRNENNI------LNTILSRC-VQY 142 (261)
T ss_pred cCchhcCCCEEEEeccHhhhCH-----------HHHHHHHHhhcCCCCCeEEEEEECChHhC------chHhhhhe-eee
Confidence 1 2348999999999987 555999999998 3444444 4334333 78899998 778
Q ss_pred eCCCC
Q 011578 376 HFNDF 380 (482)
Q Consensus 376 ~~~~~ 380 (482)
.|+.+
T Consensus 143 ~~~~~ 147 (261)
T PRK05818 143 VVLSK 147 (261)
T ss_pred ecCCh
Confidence 88888
No 352
>PRK06921 hypothetical protein; Provisional
Probab=98.45 E-value=6.3e-07 Score=83.86 Aligned_cols=71 Identities=23% Similarity=0.360 Sum_probs=44.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHc-CCCCCCCeEEeecccccccccccchhhHHHHHHhc-CCcEEEEecccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMV-GILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYR 317 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-~~~vl~iDE~d~ 317 (482)
...+++|+||||||||.|+.++|+++... + ..++.++..++...... ......+.++.. ...+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g----~~v~y~~~~~l~~~l~~-~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKG----VPVLYFPFVEGFGDLKD-DFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcC----ceEEEEEHHHHHHHHHH-HHHHHHHHHHHhcCCCEEEEecccc
Confidence 35689999999999999999999988653 2 24455555444332111 001112222222 347999999944
No 353
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=8.8e-07 Score=83.06 Aligned_cols=128 Identities=16% Similarity=0.232 Sum_probs=78.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEE---------eecccccc-ccccc--chhhHHHHHHh-----
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE---------VQRTDLVG-EFVGH--TGPKTRRRIKE----- 304 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~g~--~~~~~~~~~~~----- 304 (482)
-+..+||+|| +||+++|+.+|+.+.........+.-. -+.+++.- .--|. .-..++++.+.
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p 100 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSG 100 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCc
Confidence 4556899996 689999999999886533211111100 01111110 00011 12344554432
Q ss_pred --cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEE-ecCchhHHHHHhcCccccCCCcceeeCCC
Q 011578 305 --AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF-AGYSEPMKRVIASNEGFCRRVTKFFHFND 379 (482)
Q Consensus 305 --a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 379 (482)
+...|++||++|.+.. .+.|.||..+|+ ...++|+ |.+.+.+ .|.+++|+ ..|.|+.
T Consensus 101 ~~~~~kV~II~~ad~m~~-----------~AaNaLLKtLEEPp~~t~~iL~t~~~~~l------LpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 101 YEGKQQVFIIKDADKMHV-----------NAANSLLKVIEEPQSEIYIFLLTNDENKV------LPTIKSRT-QIFHFPK 162 (290)
T ss_pred ccCCcEEEEeehhhhcCH-----------HHHHHHHHHhcCCCCCeEEEEEECChhhC------chHHHHcc-eeeeCCC
Confidence 2337999999999987 445999999998 3344444 4333333 78899999 9999977
Q ss_pred CCHHHHHHHHH
Q 011578 380 FNSEELAKILH 390 (482)
Q Consensus 380 ~~~~~~~~il~ 390 (482)
+.++..+++.
T Consensus 163 -~~~~~~~~L~ 172 (290)
T PRK07276 163 -NEAYLIQLLE 172 (290)
T ss_pred -cHHHHHHHHH
Confidence 6666666664
No 354
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.45 E-value=7.3e-06 Score=83.45 Aligned_cols=55 Identities=22% Similarity=0.403 Sum_probs=38.1
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+++++-+..-.+.++.|+.... .+.....-+||+||||||||+++++||++++.
T Consensus 17 ~~~eLavhkkKv~eV~~wl~~~~-----------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 17 TLDELAVHKKKVEEVRSWLEEMF-----------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred CHHHhhccHHHHHHHHHHHHHHh-----------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34556666666666776654332 11123345788999999999999999999975
No 355
>PRK09183 transposase/IS protein; Provisional
Probab=98.44 E-value=7.9e-07 Score=82.96 Aligned_cols=75 Identities=25% Similarity=0.327 Sum_probs=47.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccc-cchhhHHHHHHh--cCCcEEEEeccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG-HTGPKTRRRIKE--AEGGILFVDEAYRL 318 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~--a~~~vl~iDE~d~l 318 (482)
...+++|+||||||||++|.+++..+...|. .+..++..++...+.. .....+...+.. ....+++|||++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~----~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGI----KVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC----eEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 4567999999999999999999987654332 4444555555433211 111123344443 34479999999876
Q ss_pred cc
Q 011578 319 IP 320 (482)
Q Consensus 319 ~~ 320 (482)
..
T Consensus 177 ~~ 178 (259)
T PRK09183 177 PF 178 (259)
T ss_pred CC
Confidence 44
No 356
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.42 E-value=2.2e-06 Score=68.91 Aligned_cols=69 Identities=32% Similarity=0.500 Sum_probs=49.2
Q ss_pred hHHHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCC
Q 011578 197 KMDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP 274 (482)
Q Consensus 197 ~~~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~ 274 (482)
....++..+. .+.||+-+.+.+...+..... . .....|..+.|+||||||||.+++.||+.++..|..+
T Consensus 15 ~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~--------~-~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S 84 (127)
T PF06309_consen 15 NITGLEKDLQRNLFGQHLAVEVVVNAIKGHLA--------N-PNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKS 84 (127)
T ss_pred CHHHHHHHHHHHccCcHHHHHHHHHHHHHHHc--------C-CCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCC
Confidence 3444555554 589999999888877654421 1 1233555667999999999999999999998766443
No 357
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.41 E-value=6.8e-07 Score=87.38 Aligned_cols=93 Identities=23% Similarity=0.239 Sum_probs=77.5
Q ss_pred HhHHHHHcCCHHHHHHHHhhCC--CCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHH
Q 011578 16 TIHGCAQSGDLLAFQRLLRENP--SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA 93 (482)
Q Consensus 16 ~l~~a~~~g~~~~v~~ll~~~~--~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~ 93 (482)
-|..|+...|+..+..||.++- ...+...+..|+|+||+||..|++.+.++|+= .|+|+..+|..|+|+|.||-
T Consensus 627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW----yg~dv~~rda~g~t~l~yar 702 (749)
T KOG0705|consen 627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW----YGVDVMARDAHGRTALFYAR 702 (749)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH----hCccceecccCCchhhhhHh
Confidence 4778888889988888886542 22233333348999999999999999999996 68999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCcc
Q 011578 94 KNGCNEAAKLLLAHGAFIE 112 (482)
Q Consensus 94 ~~g~~~~v~~Ll~~ga~~~ 112 (482)
+.|..+|+.+|+++|+...
T Consensus 703 ~a~sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 703 QAGSQECIDVLLQYGCPDE 721 (749)
T ss_pred hcccHHHHHHHHHcCCCcc
Confidence 9999999999999997543
No 358
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.40 E-value=1.2e-06 Score=83.42 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=61.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccccccc-chhhHHHHHHhc-CCcEEEEecccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKEA-EGGILFVDEAYRLI 319 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~a-~~~vl~iDE~d~l~ 319 (482)
...+++|+||||||||.||.++|+++...+. .+..++.++++..+... ......+.++.. ...||+|||+..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~----~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~ 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGV----SSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQ 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCC----CEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCcc
Confidence 4578999999999999999999999975443 44555555554432111 011123344433 44899999997653
Q ss_pred cCCCCCCChhHHHHHHHHHh-hhcCCcEEEEEecC
Q 011578 320 PMQKADDKDYGIEALEEIMS-VMDGGKVVVIFAGY 353 (482)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ll~-~l~~~~~~vi~~~~ 353 (482)
.+ .....+++..+++ .+..+..++|.++.
T Consensus 231 ~s-----~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 231 MS-----SWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cc-----HHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 31 1112245555543 34456666666643
No 359
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.38 E-value=1.6e-06 Score=84.35 Aligned_cols=57 Identities=26% Similarity=0.419 Sum_probs=41.1
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.|.|.+++|+.+.-. ...-.++.+.-.+......+|||.|.|||.|+-+.|-+-+..
T Consensus 332 SIfG~~DiKkAiaCl----LFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs 388 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACL----LFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS 388 (729)
T ss_pred hhcCchhHHHHHHHH----hhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC
Confidence 478999999888764 233344444444444556789999999999999998887644
No 360
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.38 E-value=7.5e-07 Score=91.58 Aligned_cols=124 Identities=20% Similarity=0.251 Sum_probs=101.3
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCC---CccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPS---LLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~---~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
+.+.-.+..||+.|+.-.|+.+|..... ++|..|.- |.++||.|..+-+.+++++|+++ +... ..
T Consensus 23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~l-Gr~al~iai~nenle~~eLLl~~----~~~~-------gd 90 (822)
T KOG3609|consen 23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPL-GRLALHIAIDNENLELQELLLDT----SSEE-------GD 90 (822)
T ss_pred chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChH-hhhceecccccccHHHHHHHhcC----cccc-------ch
Confidence 3455567899999999999999986554 56888876 99999999999999999999994 2222 35
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCcc----------ccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccc
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIE----------AKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSA 150 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~----------~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~ 150 (482)
+|.+|+..|.+++|++++.+..... ..-.-+.|||.+|| ..++++|+++|+.+|+.+..
T Consensus 91 ALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAA----h~NnyEil~~Ll~kg~~i~~ 159 (822)
T KOG3609|consen 91 ALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAA----HLNNFEILQCLLTRGHCIPI 159 (822)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHH----HhcchHHHHHHHHcCCCCCC
Confidence 8999999999999999998754321 12235789999999 89999999999999998654
No 361
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.37 E-value=6.1e-07 Score=78.66 Aligned_cols=73 Identities=22% Similarity=0.285 Sum_probs=46.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccccccc-chhhHHHHHHh-cCCcEEEEeccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKE-AEGGILFVDEAYRL 318 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~-a~~~vl~iDE~d~l 318 (482)
...+++|+||||||||.+|-++++++-..+. .+..++.+++...+-.. ......+.+.. ....+|+|||+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~----~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGY----SVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYE 120 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT------EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCc----ceeEeecCceeccccccccccchhhhcCccccccEeccccccee
Confidence 4568999999999999999999998876443 56667777665442211 11122233332 24589999999644
No 362
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.35 E-value=1.7e-06 Score=84.06 Aligned_cols=257 Identities=14% Similarity=0.169 Sum_probs=127.1
Q ss_pred HHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC-
Q 011578 200 ELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR- 277 (482)
Q Consensus 200 ~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~- 277 (482)
.+...+. +|.|++++|+.|.-.+ +--..++...|+++ ....+++|.|.||+.||-|-+.+.+.....-+.....
T Consensus 335 kLa~SiAPEIyGheDVKKaLLLlL--VGgvd~~~~dGMKI--RGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS 410 (721)
T KOG0482|consen 335 KLAASIAPEIYGHEDVKKALLLLL--VGGVDKSPGDGMKI--RGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS 410 (721)
T ss_pred HHHHhhchhhccchHHHHHHHHHh--hCCCCCCCCCCcee--ecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC
Confidence 3444443 6899999999887543 11122223334443 3456899999999999999999998654311111100
Q ss_pred -eEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhh----hcC--------C
Q 011578 278 -VTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV----MDG--------G 344 (482)
Q Consensus 278 -~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~----l~~--------~ 344 (482)
=+.+.++-+.....|+.. .--.++-.|.+||--|||+|++..... -++.+.+++ +.+ .
T Consensus 411 SGVGLTAAVmkDpvTgEM~-LEGGALVLAD~GICCIDEfDKM~e~DR--------tAIHEVMEQQTISIaKAGI~TtLNA 481 (721)
T KOG0482|consen 411 SGVGLTAAVMKDPVTGEMV-LEGGALVLADGGICCIDEFDKMDESDR--------TAIHEVMEQQTISIAKAGINTTLNA 481 (721)
T ss_pred CccccchhhhcCCCCCeeE-eccceEEEccCceEeehhhhhhhhhhh--------HHHHHHHHhhhhhhhhhccccchhh
Confidence 011222211111122110 000123356779999999999976322 222222222 111 1
Q ss_pred cEEEEEecC--------chhHHHHHhcCccccCCCcceeeC-CCCCHHHHHHHHHHHH----hcccccccc---------
Q 011578 345 KVVVIFAGY--------SEPMKRVIASNEGFCRRVTKFFHF-NDFNSEELAKILHIKM----NNQTEDSLL--------- 402 (482)
Q Consensus 345 ~~~vi~~~~--------~~~~~~~~~~~~~l~~R~~~~i~~-~~~~~~~~~~il~~~l----~~~~~~~~~--------- 402 (482)
+.-|++|.+ ....+.-+...++|++|||..+-+ +.||.+.=..+.+... .+......+
T Consensus 482 R~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR 561 (721)
T KOG0482|consen 482 RTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMR 561 (721)
T ss_pred hHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHH
Confidence 122233321 112233344468899999875543 5566543333333211 111100000
Q ss_pred ----ccccccCcccHHHHHHHHHHHhhHhhcc-------ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHH
Q 011578 403 ----YGFKLHSSCSMDAIAALIEKETTEKQRR-------EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLE 471 (482)
Q Consensus 403 ----~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~ 471 (482)
.--...|-+..+.-+.++..|...+... ....|.|-.++..+...+..|++ ..+..+|+.
T Consensus 562 ~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls---------~~V~~~DV~ 632 (721)
T KOG0482|consen 562 RYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLS---------DSVEEDDVN 632 (721)
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhc---------cccchhhHH
Confidence 0001223334443344444443222222 23457777777777777666665 357778888
Q ss_pred HHHHHHH
Q 011578 472 AGLKLLL 478 (482)
Q Consensus 472 ~al~~~~ 478 (482)
+||.-+.
T Consensus 633 EALRLme 639 (721)
T KOG0482|consen 633 EALRLME 639 (721)
T ss_pred HHHHHHH
Confidence 8876543
No 363
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.34 E-value=3.7e-06 Score=78.06 Aligned_cols=75 Identities=25% Similarity=0.378 Sum_probs=51.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccccccc-c-hhhHHHHHH-hcCCcEEEEeccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-T-GPKTRRRIK-EAEGGILFVDEAYRL 318 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~-~~~~~~~~~-~a~~~vl~iDE~d~l 318 (482)
...+++|+||||||||.||-||++++...|. .+..++.++++.+.-.. . +..-.++.+ -...-||+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~----sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGI----SVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCC----eEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence 5678999999999999999999999975443 56677777776653221 0 111222333 234589999999766
Q ss_pred cc
Q 011578 319 IP 320 (482)
Q Consensus 319 ~~ 320 (482)
..
T Consensus 180 ~~ 181 (254)
T COG1484 180 PF 181 (254)
T ss_pred cC
Confidence 43
No 364
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=5.2e-06 Score=78.62 Aligned_cols=127 Identities=7% Similarity=0.065 Sum_probs=81.3
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcC---CCC-CCC--eEEeecccccccccccchhhHHHHHHh--------cCCc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVG---ILP-TDR--VTEVQRTDLVGEFVGHTGPKTRRRIKE--------AEGG 308 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~---~~~-~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~--------a~~~ 308 (482)
.+..||+|+.|.||+++|+.+++.+.... ... ..| +..++. .+..++ ...++++.+. ....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~---~g~~i~--vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI---FDKDLS--KSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc---CCCcCC--HHHHHHHHHHhccCCcccCCce
Confidence 34577999999999999999999884321 000 111 222210 011111 1234444332 2448
Q ss_pred EEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHH
Q 011578 309 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELA 386 (482)
Q Consensus 309 vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~ 386 (482)
|++||++|.+.. .+.|.|+..+++ ...++|+.++ ++ ..+ .|++++|+ .+++|++++.++..
T Consensus 93 vvII~~~e~m~~-----------~a~NaLLK~LEEPp~~t~~il~~~-~~-~kl---l~TI~SRc-~~~~f~~l~~~~l~ 155 (299)
T PRK07132 93 ILIIKNIEKTSN-----------SLLNALLKTIEEPPKDTYFLLTTK-NI-NKV---LPTIVSRC-QVFNVKEPDQQKIL 155 (299)
T ss_pred EEEEecccccCH-----------HHHHHHHHHhhCCCCCeEEEEEeC-Ch-HhC---hHHHHhCe-EEEECCCCCHHHHH
Confidence 999999998876 455899999987 3444444433 22 333 67889999 89999999999998
Q ss_pred HHHHH
Q 011578 387 KILHI 391 (482)
Q Consensus 387 ~il~~ 391 (482)
+.+..
T Consensus 156 ~~l~~ 160 (299)
T PRK07132 156 AKLLS 160 (299)
T ss_pred HHHHH
Confidence 77764
No 365
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.29 E-value=1.8e-06 Score=80.40 Aligned_cols=65 Identities=26% Similarity=0.400 Sum_probs=33.9
Q ss_pred HHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCc
Q 011578 52 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMT 120 (482)
Q Consensus 52 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t 120 (482)
|..||+.|..+.|++|++ .|.++|.+|.+..+||.+|+-.||.++|++|+++||-...-...|.-
T Consensus 40 lceacR~GD~d~v~~LVe----tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~R 104 (516)
T KOG0511|consen 40 LCEACRAGDVDRVRYLVE----TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDR 104 (516)
T ss_pred HHHHhhcccHHHHHHHHH----hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcch
Confidence 455555555555555555 35555555555555555555555555555555555543333333433
No 366
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.28 E-value=2.5e-06 Score=73.79 Aligned_cols=106 Identities=21% Similarity=0.247 Sum_probs=61.9
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc----------------------cccccc-hhh----H
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----------------------EFVGHT-GPK----T 298 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~g~~-~~~----~ 298 (482)
++++||||+|||+++..++...... ..+++.++...... .+.... ... .
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~----~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK----GGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKA 77 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc----CCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHH
Confidence 6899999999999999999987542 22333333322111 000110 111 1
Q ss_pred HHHHHhcCCcEEEEecccccccCCC---CCCChhHHHHHHHHHhhhcCCcEEEEEecCch
Q 011578 299 RRRIKEAEGGILFVDEAYRLIPMQK---ADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 355 (482)
Q Consensus 299 ~~~~~~a~~~vl~iDE~d~l~~~~~---~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~ 355 (482)
..........+|+|||+..+.+... .+......+.+..|+....+..+.+|++++..
T Consensus 78 ~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 137 (165)
T cd01120 78 ERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVP 137 (165)
T ss_pred HHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 1222334558999999998875322 12233445677788888776666666665443
No 367
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.25 E-value=6.9e-07 Score=94.40 Aligned_cols=88 Identities=36% Similarity=0.437 Sum_probs=77.7
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhh
Q 011578 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL 162 (482)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~ 162 (482)
..|.|+||.|+..|..-++++|+++|+++|..|..|+||||.+. ..|+...+.+|+++|+++++.+.+|.+|++++
T Consensus 654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~----~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a 729 (785)
T KOG0521|consen 654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHAT----ASGHTSIACLLLKRGADPNAFDPDGKLPLDIA 729 (785)
T ss_pred hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhh----hhcccchhhhhccccccccccCccCcchhhHH
Confidence 45799999999999999999999999999999999999999999 88999999999999999999999999999766
Q ss_pred hcCCCChHHHHHH
Q 011578 163 SNGPGSAKLRELL 175 (482)
Q Consensus 163 a~~~~~~~~~~lL 175 (482)
... .+..++-++
T Consensus 730 ~~~-~~~d~~~l~ 741 (785)
T KOG0521|consen 730 MEA-ANADIVLLL 741 (785)
T ss_pred hhh-ccccHHHHH
Confidence 554 444444333
No 368
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.25 E-value=2.4e-05 Score=77.36 Aligned_cols=173 Identities=14% Similarity=0.201 Sum_probs=90.2
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc-------cccccccccchhhHH-----HHH-Hhc-----
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT-------DLVGEFVGHTGPKTR-----RRI-KEA----- 305 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~-----~~~-~~a----- 305 (482)
.-+|++||+||||||..+.|+++++. .+.++... .+-..-.+.+..... +-| ..+
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~-------~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~ 183 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGY-------QLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGS 183 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCc-------eeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhch
Confidence 45889999999999999999999986 44554421 111111111111111 111 111
Q ss_pred ----------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEEEecCc-----hhHHHHHhcCccc
Q 011578 306 ----------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYS-----EPMKRVIASNEGF 367 (482)
Q Consensus 306 ----------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi~~~~~-----~~~~~~~~~~~~l 367 (482)
...+|||||+=..+... .. +.+...|+.+-. -.+|++.|... +....+ -.+--.
T Consensus 184 l~~~g~~~~~~~~liLveDLPn~~~~d---~~----~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf-~~d~q~ 255 (634)
T KOG1970|consen 184 LQMSGDDLRTDKKLILVEDLPNQFYRD---DS----ETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLF-PKDIQE 255 (634)
T ss_pred hhhcccccccCceEEEeeccchhhhhh---hH----HHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhc-hhhhhh
Confidence 12589999986554321 11 333333333322 22444444321 111100 000001
Q ss_pred cCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 368 CRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 368 ~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
.-|+ ..|.|.+..+.-+.+.|.+++..+..... ++++. +...+..++.+. +.+||.++......
T Consensus 256 ~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s--~~k~~---~~~~v~~i~~~s----------~GDIRsAInsLQls 319 (634)
T KOG1970|consen 256 EPRI-SNISFNPIAPTIMKKFLKRICRIEANKKS--GIKVP---DTAEVELICQGS----------GGDIRSAINSLQLS 319 (634)
T ss_pred ccCc-ceEeecCCcHHHHHHHHHHHHHHhccccc--CCcCc---hhHHHHHHHHhc----------CccHHHHHhHhhhh
Confidence 2255 68999999999999999888887653211 11111 345666666654 45666666554443
No 369
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.24 E-value=8.3e-07 Score=93.19 Aligned_cols=122 Identities=25% Similarity=0.288 Sum_probs=78.0
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHh-CCCCccccccCCCcceeeeh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMTPLHLSV 126 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpLh~A~ 126 (482)
|+|.+|+++..++...++.+++. .+......|.+|...+|+ |..++++++-+|+. .|..++.+|.+||||||+|+
T Consensus 574 ~~lllhL~a~~lyawLie~~~e~---~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa 649 (975)
T KOG0520|consen 574 DMLLLHLLAELLYAWLIEKVIEW---AGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAA 649 (975)
T ss_pred chHHHHHHHHHhHHHHHHHHhcc---cccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHh
Confidence 77777777777777777777773 133344445555566666 44455555544443 56777777777777777777
Q ss_pred hhccCCChHHHHHHHhhCCCC------ccccCCCCCChhhhhhcCCCChHHHHHHHhh
Q 011578 127 WYSIRSEDYATVKTLLEYNAD------CSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 178 (482)
Q Consensus 127 ~~~~~~~~~~~v~~Ll~~gad------~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~ 178 (482)
..|+..++..|++.|++ ++..+..|.|+- ..+..+++..+..+|.+.
T Consensus 650 ----~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~-~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 650 ----FRGREKLVASLIELGADPGAVTDPSPETPGGKTAA-DLARANGHKGIAGYLSEK 702 (975)
T ss_pred ----hcCHHHHHHHHHHhccccccccCCCCCCCCCCchh-hhhhcccccchHHHHhhh
Confidence 66777777777755443 344455677777 444556666666666655
No 370
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.22 E-value=1.9e-05 Score=79.57 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=42.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.-|+++.|++++++++.+++..... +. . ....-++|.||||+|||+||++||+.+..
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~-------gl--~-~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQ-------GL--E-EKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHH-------hc--C-CCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3467789999999999987532211 11 1 13356889999999999999999998864
No 371
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.22 E-value=1.8e-05 Score=79.06 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=59.2
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC-------CeE
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD-------RVT 279 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~-------~~~ 279 (482)
.|.|+..+|..+.-.+- .-..+..+-......-.++||.|.||||||-+.|..++..... +..++ -..
T Consensus 450 sIyGh~~VK~AvAlaLf----GGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RA-V~tTGqGASavGLTa 524 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALF----GGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRA-VFTTGQGASAVGLTA 524 (854)
T ss_pred hhhchHHHHHHHHHHHh----cCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcce-eEeccCCccccceeE
Confidence 57888888888764321 1111111222223345689999999999999999999866531 11110 001
Q ss_pred EeecccccccccccchhhHHHHHHhcCCcEEEEeccccccc
Q 011578 280 EVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIP 320 (482)
Q Consensus 280 ~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~ 320 (482)
.+.-.-...+|.=+.+ ++-.|.+||-+|||+|++..
T Consensus 525 ~v~KdPvtrEWTLEaG-----ALVLADkGvClIDEFDKMnd 560 (854)
T KOG0477|consen 525 YVRKDPVTREWTLEAG-----ALVLADKGVCLIDEFDKMND 560 (854)
T ss_pred EEeeCCccceeeeccC-----eEEEccCceEEeehhhhhcc
Confidence 1111111222332222 33457789999999999975
No 372
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.21 E-value=3.7e-06 Score=78.91 Aligned_cols=138 Identities=18% Similarity=0.229 Sum_probs=71.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC--eEEeecccccccccccchhhHHHHHHh--------------c
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR--VTEVQRTDLVGEFVGHTGPKTRRRIKE--------------A 305 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------a 305 (482)
...++||.||+|||||++++.+-..+.. .. ...++.+... +...+.++++. .
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~------~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~ 99 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDS------DKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGG 99 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTT------CCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESS
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCc------cccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCC
Confidence 3568999999999999999886543221 12 1122222110 11122222211 1
Q ss_pred CCcEEEEecccccccCCCCCCChhHHHHHHHHHhh---hcC--------CcEEEEEecCchhHHHHHhcCccccCCCcce
Q 011578 306 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG--------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKF 374 (482)
Q Consensus 306 ~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~---l~~--------~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~ 374 (482)
+..|+|||++..-.+...+ .....+.+.++++. .|. .++.+++|.++..-. ....|.|.+.| .+
T Consensus 100 k~lv~fiDDlN~p~~d~yg--tq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr--~~is~R~~r~f-~i 174 (272)
T PF12775_consen 100 KKLVLFIDDLNMPQPDKYG--TQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGR--NPISPRFLRHF-NI 174 (272)
T ss_dssp SEEEEEEETTT-S---TTS----HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT----SHHHHHHTTE-EE
T ss_pred cEEEEEecccCCCCCCCCC--CcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCC--CCCChHHhhhe-EE
Confidence 2279999999766553321 11112333333322 111 235666665543211 11267788888 79
Q ss_pred eeCCCCCHHHHHHHHHHHHhcc
Q 011578 375 FHFNDFNSEELAKILHIKMNNQ 396 (482)
Q Consensus 375 i~~~~~~~~~~~~il~~~l~~~ 396 (482)
+.++.|+.+.+..|+..++...
T Consensus 175 ~~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 175 LNIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp EE----TCCHHHHHHHHHHHHH
T ss_pred EEecCCChHHHHHHHHHHHhhh
Confidence 9999999999999999888754
No 373
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.19 E-value=1e-06 Score=93.18 Aligned_cols=86 Identities=31% Similarity=0.429 Sum_probs=79.1
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 127 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~ 127 (482)
|.|+||.|+..|..-++++|++ .++++|..|..|+||||.+...|+...+..|+++|++.++.+..|.+||++|.
T Consensus 656 ~~s~lh~a~~~~~~~~~e~ll~----~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~- 730 (785)
T KOG0521|consen 656 GCSLLHVAVGTGDSGAVELLLQ----NGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAM- 730 (785)
T ss_pred ccchhhhhhccchHHHHHHHHh----cCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHh-
Confidence 7999999999999999999999 68889999999999999999999999999999999999999999999999998
Q ss_pred hccCCChHHHHHHH
Q 011578 128 YSIRSEDYATVKTL 141 (482)
Q Consensus 128 ~~~~~~~~~~v~~L 141 (482)
...+.+++-+|
T Consensus 731 ---~~~~~d~~~l~ 741 (785)
T KOG0521|consen 731 ---EAANADIVLLL 741 (785)
T ss_pred ---hhccccHHHHH
Confidence 44556665554
No 374
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.19 E-value=1.9e-06 Score=72.79 Aligned_cols=68 Identities=29% Similarity=0.462 Sum_probs=48.7
Q ss_pred cccccCcCCCChHHHHHHHcCCHHHHHHHHhCC-CCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCC
Q 011578 76 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147 (482)
Q Consensus 76 ~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad 147 (482)
.++|.+|.+|+|||+.|+..|+.+.|.||+.+| +.|...|..|.+++.+|- ..|+.++++.|.+.-.+
T Consensus 3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlae----k~g~~~fvh~lfe~~~e 71 (223)
T KOG2384|consen 3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAE----KGGAQAFVHSLFENDRE 71 (223)
T ss_pred CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHH----hcChHHHHHHHHHHhcc
Confidence 456777777777777777777777777777777 677777777777777777 67777777777665333
No 375
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.19 E-value=2.4e-06 Score=79.62 Aligned_cols=85 Identities=25% Similarity=0.249 Sum_probs=73.8
Q ss_pred ChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcC
Q 011578 86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 165 (482)
Q Consensus 86 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~ 165 (482)
.--|..||+.|.++.|++|++.|.++|.+|+....||.+|+ -.||.++|++|+++||-+.--..+|..++ +.|.
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAs----LcGHe~vvklLLenGAiC~rdtf~G~RC~-YgaL- 110 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLAS----LCGHEDVVKLLLENGAICSRDTFDGDRCH-YGAL- 110 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHH----HcCcHHHHHHHHHcCCcccccccCcchhh-hhhh-
Confidence 44588999999999999999999999999999999999999 88999999999999999987777888886 6554
Q ss_pred CCChHHHHHHHhh
Q 011578 166 PGSAKLRELLLWH 178 (482)
Q Consensus 166 ~~~~~~~~lL~~~ 178 (482)
+..+...|+.+
T Consensus 111 --nd~IR~mllsy 121 (516)
T KOG0511|consen 111 --NDRIRRMLLSY 121 (516)
T ss_pred --hHHHHHHHHHH
Confidence 34566666654
No 376
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.19 E-value=8.2e-05 Score=74.22 Aligned_cols=219 Identities=19% Similarity=0.225 Sum_probs=103.8
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc---------------ccccc-c----hhhHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG---------------EFVGH-T----GPKTRR 300 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~g~-~----~~~~~~ 300 (482)
.+|..++|+|++|+||||++..||..+...+. .+.-+++..... ..++. . ...+.+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~----kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~ 168 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGL----KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKE 168 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCC----eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHH
Confidence 35677999999999999999999998875432 222233222100 01111 1 122344
Q ss_pred HHHhcC-CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEE-ecCchhHHHHHhcCccccCCCc-ceeeC
Q 011578 301 RIKEAE-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIF-AGYSEPMKRVIASNEGFCRRVT-KFFHF 377 (482)
Q Consensus 301 ~~~~a~-~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~-~~i~~ 377 (482)
.++.+. .-+|+||...++... +...+-+..+........+++++ +++........ ..+...++ .-+-+
T Consensus 169 al~~~~~~DvVIIDTAGr~~~d------~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a---~~F~~~l~i~gvIl 239 (437)
T PRK00771 169 GLEKFKKADVIIVDTAGRHALE------EDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQA---KAFHEAVGIGGIII 239 (437)
T ss_pred HHHHhhcCCEEEEECCCcccch------HHHHHHHHHHHHHhcccceeEEEeccccHHHHHHH---HHHHhcCCCCEEEE
Confidence 454433 379999998766531 11122233344444444554444 43332222111 11222221 23334
Q ss_pred CCCCHHHHH-HHHHHH-HhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCC
Q 011578 378 NDFNSEELA-KILHIK-MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFD 455 (482)
Q Consensus 378 ~~~~~~~~~-~il~~~-l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~ 455 (482)
...|...+. .++... ....+-.....|-.+ .++..-.-..++..- ....++..+++.|.......-...
T Consensus 240 TKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v-~Dle~f~~~~~~~~i--------lgmgd~~~l~e~~~~~~~~~~~~~ 310 (437)
T PRK00771 240 TKLDGTAKGGGALSAVAETGAPIKFIGTGEKI-DDLERFDPDRFISRL--------LGMGDLESLLEKVEEALDEEEEEK 310 (437)
T ss_pred ecccCCCcccHHHHHHHHHCcCEEEEecCCCc-ccCCcCCHHHHHHHH--------hCCCChHHHHHHHHHhhhHHHHHH
Confidence 555543332 222211 112221111123333 333333333333332 234577888887766531110000
Q ss_pred CCChhhhhcccHHHHHHHHHHHHhcC
Q 011578 456 CLDTDELRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 456 ~~~~~~~~~i~~~d~~~al~~~~~~~ 481 (482)
....-..-.+|.+||.+-++.+++.|
T Consensus 311 ~~~~~~~~~f~l~d~~~q~~~~~kmG 336 (437)
T PRK00771 311 DVEKMMKGKFTLKDMYKQLEAMNKMG 336 (437)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHhcC
Confidence 00001113689999999999999988
No 377
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.18 E-value=6.5e-06 Score=87.88 Aligned_cols=184 Identities=14% Similarity=0.125 Sum_probs=109.3
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCc--eeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH--MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.++.|.......+..++...... +...+.......... ++++||||.|||+.|.+.|+.++. .+++.++
T Consensus 320 k~~~~~~~~~~~~~~~l~~~k~~--~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~-------~v~E~Na 390 (871)
T KOG1968|consen 320 KALEGNASSSKKASKWLAKSKDK--EKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGF-------KVVEKNA 390 (871)
T ss_pred HhhhcccchhhhhhhHHHhhhcc--ccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccc-------ceeecCc
Confidence 34555554444555555444222 111112122222222 689999999999999999999987 7888888
Q ss_pred ccccccccc-----c--chhhHHHHHH-------h-cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEE
Q 011578 284 TDLVGEFVG-----H--TGPKTRRRIK-------E-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVV 347 (482)
Q Consensus 284 ~~~~~~~~g-----~--~~~~~~~~~~-------~-a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~ 347 (482)
++..+++.. . +...+...+. . ....||++||+|.+... . +..+.++.+.... ..-+
T Consensus 391 s~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~-d-------Rg~v~~l~~l~~ks~~Pi 462 (871)
T KOG1968|consen 391 SDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE-D-------RGGVSKLSSLCKKSSRPL 462 (871)
T ss_pred cccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch-h-------hhhHHHHHHHHHhccCCe
Confidence 876655322 2 1222223331 1 12359999999998761 1 1233444444443 3334
Q ss_pred EEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHH
Q 011578 348 VIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 423 (482)
Q Consensus 348 vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (482)
++.|+..+.. ...-..|-+.-++|+.|+.+.+..-+...+..+. ..++...+..+...+
T Consensus 463 v~~cndr~~p------~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~-----------~ki~~~~l~~~s~~~ 521 (871)
T KOG1968|consen 463 VCTCNDRNLP------KSRALSRACSDLRFSKPSSELIRSRIMSICKSEG-----------IKISDDVLEEISKLS 521 (871)
T ss_pred EEEecCCCCc------cccchhhhcceeeecCCcHHHHHhhhhhhhcccc-----------eecCcHHHHHHHHhc
Confidence 4445333221 1212335557899999999999888888777653 346788899998876
No 378
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.18 E-value=2e-05 Score=65.61 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=27.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILP 274 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~ 274 (482)
....+.++||||+||||++..++..+...++..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 356799999999999999999999997765433
No 379
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.17 E-value=0.00016 Score=67.49 Aligned_cols=161 Identities=11% Similarity=0.192 Sum_probs=89.6
Q ss_pred hhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeE--Eeeccc
Q 011578 208 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT--EVQRTD 285 (482)
Q Consensus 208 i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~--~~~~~~ 285 (482)
+.|..+-...+.++++.... .....++++.||-|+|||++.-..-...... ...|+ .+++.-
T Consensus 26 l~g~~~~~~~l~~~lkqt~~------------~gEsnsviiigprgsgkT~li~~~Ls~~q~~----~E~~l~v~Lng~~ 89 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTIL------------HGESNSVIIIGPRGSGKTILIDTRLSDIQEN----GENFLLVRLNGEL 89 (408)
T ss_pred eeehHHHHHHHHHHHHHHHH------------hcCCCceEEEccCCCCceEeeHHHHhhHHhc----CCeEEEEEECccc
Confidence 45666666666665443321 1345689999999999998755443332111 11333 333221
Q ss_pred c-------------------cccccccchhhHHHHHHhc-------CCcEEEE-eccccccc-CCCCCCChhHHHHHHHH
Q 011578 286 L-------------------VGEFVGHTGPKTRRRIKEA-------EGGILFV-DEAYRLIP-MQKADDKDYGIEALEEI 337 (482)
Q Consensus 286 ~-------------------~~~~~g~~~~~~~~~~~~a-------~~~vl~i-DE~d~l~~-~~~~~~~~~~~~~~~~l 337 (482)
. ..+.+|....++..++..- .+.|+|| ||||-+.+ +|| -.+-.|
T Consensus 90 ~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQ--------tllYnl 161 (408)
T KOG2228|consen 90 QTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQ--------TLLYNL 161 (408)
T ss_pred hhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhh--------HHHHHH
Confidence 1 1123444444454444321 1247777 79999876 455 233333
Q ss_pred Hhhhc--CCcEEEEEecCchhHHHHHhcCccccCCCcce-eeC-CCCCHHHHHHHHHHHHh
Q 011578 338 MSVMD--GGKVVVIFAGYSEPMKRVIASNEGFCRRVTKF-FHF-NDFNSEELAKILHIKMN 394 (482)
Q Consensus 338 l~~l~--~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~-i~~-~~~~~~~~~~il~~~l~ 394 (482)
...-+ ...+.||+.|+.-...+.++. ...+||..+ |++ |+..-++...+++..+.
T Consensus 162 fDisqs~r~Piciig~Ttrld~lE~LEK--RVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 162 FDISQSARAPICIIGVTTRLDILELLEK--RVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred HHHHhhcCCCeEEEEeeccccHHHHHHH--HHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 33333 255788888776666555433 457799443 554 55556888888887663
No 380
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.16 E-value=3.1e-06 Score=89.07 Aligned_cols=128 Identities=20% Similarity=0.087 Sum_probs=102.4
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
.....|.+.+|+++..+....+..+++..+...+..+.. |.-.+|+ |..++++..-+++.. .+..++.+|..|+|
T Consensus 569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d-~qgV~hf-ca~lg~ewA~ll~~~---~~~ai~i~D~~G~t 643 (975)
T KOG0520|consen 569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRD-GQGVIHF-CAALGYEWAFLPISA---DGVAIDIRDRNGWT 643 (975)
T ss_pred cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhccc-CCChhhH-hhhcCCceeEEEEee---cccccccccCCCCc
Confidence 445678999999999999999999997534444444443 7777787 666777777777765 68889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccc------cccCCCcceeeehhhccCCChHHHHHHHhhC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEA------KANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~------~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~ 144 (482)
|||||+..|+..++..|++.|++.+. ....|.|+--.|. ..|+..+.-+|-+.
T Consensus 644 pL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~----s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 644 PLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLAR----ANGHKGIAGYLSEK 702 (975)
T ss_pred ccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhh----cccccchHHHHhhh
Confidence 99999999999999999998875443 3456888888887 88899898888876
No 381
>PHA00729 NTP-binding motif containing protein
Probab=98.05 E-value=1.6e-05 Score=71.45 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=23.3
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+++++|+||||||++|.+|++.+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 382
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.02 E-value=2.4e-05 Score=66.36 Aligned_cols=74 Identities=19% Similarity=0.144 Sum_probs=64.1
Q ss_pred CCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCC-cccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCcccccc
Q 011578 38 SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK-VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN 116 (482)
Q Consensus 38 ~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~ 116 (482)
.++|.+|.. |||||+.|+..|+.+.+.+|+.+ | +.+...|..|.+++-+|-+.|..+++..|.+.-.+-...+.
T Consensus 3 ~~in~rD~f-gWTalmcaa~eg~~eavsyllgr----g~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~n 77 (223)
T KOG2384|consen 3 GNINARDAF-GWTALMCAAMEGSNEAVSYLLGR----GVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMN 77 (223)
T ss_pred CCccchhhh-cchHHHHHhhhcchhHHHHHhcc----CcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCccc
Confidence 467888886 99999999999999999999995 5 78889999999999999999999999999997555444333
No 383
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.01 E-value=1.8e-05 Score=63.20 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=47.6
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcCC-CCCCCeEEeecc-cccccccccchhhHHHHHHhcCCcEEEEecccccccCCC
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVGI-LPTDRVTEVQRT-DLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQK 323 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~~-~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~ 323 (482)
|.|+||||+|||++|+.|++.+..... .....++..++. +....|. ...|+++||+.......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~--------------~q~vvi~DD~~~~~~~~- 65 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQ--------------GQPVVIIDDFGQDNDGY- 65 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccC--------------CCcEEEEeecCcccccc-
Confidence 579999999999999999998875321 111223222221 1111111 34789999997665421
Q ss_pred CCCChhHHHHHHHHHhhhcCCcE
Q 011578 324 ADDKDYGIEALEEIMSVMDGGKV 346 (482)
Q Consensus 324 ~~~~~~~~~~~~~ll~~l~~~~~ 346 (482)
.......|++.++...+
T Consensus 66 ------~~~~~~~l~~l~s~~~~ 82 (107)
T PF00910_consen 66 ------NYSDESELIRLISSNPF 82 (107)
T ss_pred ------chHHHHHHHHHHhcCCc
Confidence 11244667777765443
No 384
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.00 E-value=1.8e-05 Score=77.07 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=60.2
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEE--eecccccccccccchhhHHHHHHh-cCC-cEEEEecc
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE--VQRTDLVGEFVGHTGPKTRRRIKE-AEG-GILFVDEA 315 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~-a~~-~vl~iDE~ 315 (482)
...+.++.||||+|+|||+|.-.+...+.... .....|.. .....-..++.|... .+..+.+. +.. .||.|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~-k~R~HFh~Fm~~vh~~l~~~~~~~~-~l~~va~~l~~~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKR-KRRVHFHEFMLDVHSRLHQLRGQDD-PLPQVADELAKESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccc-cccccccHHHHHHHHHHHHHhCCCc-cHHHHHHHHHhcCCEEEEeee
Confidence 45789999999999999999999988664311 11111110 000001111122111 12222222 233 49999999
Q ss_pred cccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHH
Q 011578 316 YRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMK 358 (482)
Q Consensus 316 d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~ 358 (482)
.--... .--++..|++.+=...+++|+|+|..|-+
T Consensus 137 ~V~Dia--------DAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 137 QVTDIA--------DAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred eccchh--------HHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 644321 12566777777666677777777655543
No 385
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.00 E-value=2.1e-05 Score=70.32 Aligned_cols=99 Identities=21% Similarity=0.302 Sum_probs=57.5
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc----ccccchhhHHHHHHh------------cCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVGHTGPKTRRRIKE------------AEG 307 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~------------a~~ 307 (482)
...++.||||||||++.+.+...+...+ ..++.+.++.-... ..|.....+...+.. ...
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g----~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~ 94 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG----KRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKK 94 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT------EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TST
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC----CeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcc
Confidence 4577899999999999999999887643 25666665432111 122222223333221 123
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM 357 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~ 357 (482)
.||+|||+..+.. ..+..|+.........+|+.+.++.+
T Consensus 95 ~vliVDEasmv~~-----------~~~~~ll~~~~~~~~klilvGD~~QL 133 (196)
T PF13604_consen 95 DVLIVDEASMVDS-----------RQLARLLRLAKKSGAKLILVGDPNQL 133 (196)
T ss_dssp SEEEESSGGG-BH-----------HHHHHHHHHS-T-T-EEEEEE-TTSH
T ss_pred cEEEEecccccCH-----------HHHHHHHHHHHhcCCEEEEECCcchh
Confidence 7999999988876 45577778777744455555445543
No 386
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.97 E-value=0.00029 Score=68.60 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=58.2
Q ss_pred CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCc----------cccC-CCccee
Q 011578 307 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNE----------GFCR-RVTKFF 375 (482)
Q Consensus 307 ~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~----------~l~~-R~~~~i 375 (482)
.-||||||+|++.+ +...+++..+-..++-..+++|++..++.+...+...- ..++ -|+..+
T Consensus 173 ~iViiIDdLDR~~~-------~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~ 245 (325)
T PF07693_consen 173 RIVIIIDDLDRCSP-------EEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPF 245 (325)
T ss_pred eEEEEEcchhcCCc-------HHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEE
Confidence 37999999999976 33445556555556667788888766666555443321 2233 448889
Q ss_pred eCCCCCHHHHHHHHHHHHhccc
Q 011578 376 HFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 376 ~~~~~~~~~~~~il~~~l~~~~ 397 (482)
.+|+++..+..+++...+.+..
T Consensus 246 ~lP~~~~~~~~~~~~~~~~~~~ 267 (325)
T PF07693_consen 246 SLPPPSPSDLERYLNELLESLE 267 (325)
T ss_pred EeCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999888766543
No 387
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.00022 Score=64.31 Aligned_cols=179 Identities=18% Similarity=0.193 Sum_probs=102.4
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc-----cccccc--c-------------hhhHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV-----GEFVGH--T-------------GPKTRRRI 302 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~--~-------------~~~~~~~~ 302 (482)
..-+.++|+.|+|||++.|++...+.... ...+.++...+. ..++-+ + ...+...+
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~d~----~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNEDQ----VAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCc----eEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence 34578999999999999997776554211 122233332211 111111 1 11111222
Q ss_pred HhcCC-cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchhHHHH-HhcCccccCCCcceeeCC
Q 011578 303 KEAEG-GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRV-IASNEGFCRRVTKFFHFN 378 (482)
Q Consensus 303 ~~a~~-~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~~~~~-~~~~~~l~~R~~~~i~~~ 378 (482)
.+... -++++||++.+..+.- +++..|...-++ +..-++..+.+.-..++ ...-..+..|++..|+++
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~l--------e~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~ 198 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSAL--------EALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELP 198 (269)
T ss_pred HhCCCCeEEeehhHhhhChhHH--------HHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecC
Confidence 33333 7999999999976322 333333333333 33456666555433222 000133455998889999
Q ss_pred CCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 379 DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 379 ~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
+++.++-...++..++.-. ...+=++.+++..+..... +--+.+.+++..|....
T Consensus 199 P~~~~~t~~yl~~~Le~a~--------~~~~l~~~~a~~~i~~~sq-------g~P~lin~~~~~Al~~a 253 (269)
T COG3267 199 PLTEAETGLYLRHRLEGAG--------LPEPLFSDDALLLIHEASQ-------GIPRLINNLATLALDAA 253 (269)
T ss_pred CcChHHHHHHHHHHHhccC--------CCcccCChhHHHHHHHHhc-------cchHHHHHHHHHHHHHH
Confidence 9999999999999988653 2334567777777766553 23456667766666543
No 388
>PRK08118 topology modulation protein; Reviewed
Probab=97.89 E-value=0.0001 Score=64.01 Aligned_cols=102 Identities=17% Similarity=0.228 Sum_probs=59.5
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQK 323 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~ 323 (482)
..+++.||||+||||+|+.|++.++. +++.++. +.-. .+ -.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~-------~~~~lD~--l~~~-----------------~~-------------w~ 42 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI-------PVHHLDA--LFWK-----------------PN-------------WE 42 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC-------Cceecch--hhcc-----------------cC-------------Cc
Confidence 36899999999999999999998865 4443321 1000 00 00
Q ss_pred CCCChhHHHHHHHHHhh-hcCCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhcc
Q 011578 324 ADDKDYGIEALEEIMSV-MDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 396 (482)
Q Consensus 324 ~~~~~~~~~~~~~ll~~-l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 396 (482)
..+. +....+++. +.... .||-.++....... ..++|.+|.+..|...-..+++++.++..
T Consensus 43 ~~~~----~~~~~~~~~~~~~~~-wVidG~~~~~~~~~-------l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~ 104 (167)
T PRK08118 43 GVPK----EEQITVQNELVKEDE-WIIDGNYGGTMDIR-------LNAADTIIFLDIPRTICLYRAFKRRVQYR 104 (167)
T ss_pred CCCH----HHHHHHHHHHhcCCC-EEEeCCcchHHHHH-------HHhCCEEEEEeCCHHHHHHHHHHHHHHHc
Confidence 0000 111222222 33333 34444344333211 33688999999999888899999988643
No 389
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.86 E-value=5.2e-05 Score=67.33 Aligned_cols=24 Identities=33% Similarity=0.299 Sum_probs=20.9
Q ss_pred eeEecCCCCchHHHHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++++||||||||+++..++.....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~ 25 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA 25 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999998886643
No 390
>PRK10867 signal recognition particle protein; Provisional
Probab=97.86 E-value=0.00093 Score=66.64 Aligned_cols=219 Identities=17% Similarity=0.169 Sum_probs=102.0
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHc-CCCCCCCeEEeecccccc----------c-----cc----ccchhhH-H
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMV-GILPTDRVTEVQRTDLVG----------E-----FV----GHTGPKT-R 299 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~-~~~~~~~~~~~~~~~~~~----------~-----~~----g~~~~~~-~ 299 (482)
.+|..++|.||+|+||||++..+|..+... +. .+.-+++..... . ++ +.....+ .
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~----kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~ 173 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKK----KVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAK 173 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCC----cEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHH
Confidence 346678899999999999999999987653 32 233333332111 0 01 1122222 2
Q ss_pred HHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEE-ecCchhHHHHHhcCccccCCCc-ce
Q 011578 300 RRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIF-AGYSEPMKRVIASNEGFCRRVT-KF 374 (482)
Q Consensus 300 ~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~-~~ 374 (482)
+.++.+ ..-+|+||=..++.. ++...+.+..+...+....+++++ +++....... -..+..+++ .-
T Consensus 174 ~a~~~a~~~~~DvVIIDTaGrl~~------d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~---a~~F~~~~~i~g 244 (433)
T PRK10867 174 AALEEAKENGYDVVIVDTAGRLHI------DEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNT---AKAFNEALGLTG 244 (433)
T ss_pred HHHHHHHhcCCCEEEEeCCCCccc------CHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHH---HHHHHhhCCCCE
Confidence 344332 346999998876653 122223334444444444555555 3332222211 122222221 22
Q ss_pred eeCCCCCHHHHHHHHHHHHhcccccccc--ccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhh
Q 011578 375 FHFNDFNSEELAKILHIKMNNQTEDSLL--YGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRL 452 (482)
Q Consensus 375 i~~~~~~~~~~~~il~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~ 452 (482)
+-+..+|...+.-.+-...........+ .|-.+ .++..-.-..++.. .....++..+++.|.......-
T Consensus 245 iIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v-~DLe~f~p~~~~~~--------ilgmgD~~~l~e~~~~~~~~~~ 315 (433)
T PRK10867 245 VILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKL-DDLEPFHPDRMASR--------ILGMGDVLSLIEKAQEVVDEEK 315 (433)
T ss_pred EEEeCccCcccccHHHHHHHHHCcCEEEEeCCCcc-ccCccCCHHHHHHH--------HhCCCChHHHHHHHHHhhCHHH
Confidence 3344455333322222222221111111 12222 22222222222322 2235678888888776531110
Q ss_pred cCCCCChhhhhcccHHHHHHHHHHHHhcC
Q 011578 453 SFDCLDTDELRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 453 ~~~~~~~~~~~~i~~~d~~~al~~~~~~~ 481 (482)
.......-..-..|.+||.+-++.+++.|
T Consensus 316 ~~~~~~~~~~g~f~l~d~~~q~~~~~kmG 344 (433)
T PRK10867 316 AEKLAKKLKKGKFDLEDFLEQLQQMKKMG 344 (433)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 00000000112689999999999999987
No 391
>PRK07261 topology modulation protein; Provisional
Probab=97.84 E-value=0.00012 Score=63.83 Aligned_cols=102 Identities=20% Similarity=0.261 Sum_probs=60.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCC
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKA 324 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~ 324 (482)
.+++.|+||+||||+|+.|+..++. +++..+ .+. + .++ + .+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~-------~~i~~D--~~~--~---------------~~~--~-~~~--------- 43 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNC-------PVLHLD--TLH--F---------------QPN--W-QER--------- 43 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC-------CeEecC--CEE--e---------------ccc--c-ccC---------
Confidence 5889999999999999999987643 333322 110 0 000 0 000
Q ss_pred CCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhc
Q 011578 325 DDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN 395 (482)
Q Consensus 325 ~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 395 (482)
+ ..+.+..+...+.++. .||=+++.... .+....++|.+|.+..|-..-+.+++++.+..
T Consensus 44 -~---~~~~~~~~~~~~~~~~-wIidg~~~~~~------~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~ 103 (171)
T PRK07261 44 -D---DDDMIADISNFLLKHD-WIIDGNYSWCL------YEERMQEADQIIFLNFSRFNCLYRAFKRYLKY 103 (171)
T ss_pred -C---HHHHHHHHHHHHhCCC-EEEcCcchhhh------HHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 0 0122233344455555 44444444322 12334478899999999999999999998864
No 392
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.83 E-value=5.4e-05 Score=69.04 Aligned_cols=65 Identities=29% Similarity=0.248 Sum_probs=48.1
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh--cCCcEEEEeccccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLIP 320 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--a~~~vl~iDE~d~l~~ 320 (482)
..+..++||+|||||.+.|.+|+.++. +++.+++++...- ..+.++|.- ..|+-+.+||++++..
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~-------~~~vfnc~~~~~~------~~l~ril~G~~~~GaW~cfdefnrl~~ 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGR-------FVVVFNCSEQMDY------QSLSRILKGLAQSGAWLCFDEFNRLSE 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT---------EEEEETTSSS-H------HHHHHHHHHHHHHT-EEEEETCCCSSH
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCC-------eEEEecccccccH------HHHHHHHHHHhhcCchhhhhhhhhhhH
Confidence 356778999999999999999999987 8888998875432 334555542 2478999999999975
No 393
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.83 E-value=0.00016 Score=68.94 Aligned_cols=134 Identities=15% Similarity=0.217 Sum_probs=67.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc----cc---cccccc---------hhhHHH-HHHh
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL----VG---EFVGHT---------GPKTRR-RIKE 304 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~----~~---~~~g~~---------~~~~~~-~~~~ 304 (482)
....+.++|++|+|||++|+.+++............++.+..... .. ..++.. .....+ +.+.
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 456788999999999999999998755322221122333332211 00 011111 111222 2221
Q ss_pred --cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhh---cCCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCC
Q 011578 305 --AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM---DGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND 379 (482)
Q Consensus 305 --a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l---~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 379 (482)
.+.++|+||+++... .+..+...+ ..+.. ||+||...... .... .-...++++.
T Consensus 98 L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~~~k-ilvTTR~~~v~------~~~~-~~~~~~~l~~ 156 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEE-------------DLEELREPLPSFSSGSK-ILVTTRDRSVA------GSLG-GTDKVIELEP 156 (287)
T ss_dssp HCCTSEEEEEEEE-SHH-------------HH-------HCHHSS-E-EEEEESCGGGG------TTHH-SCEEEEECSS
T ss_pred hccccceeeeeeecccc-------------ccccccccccccccccc-ccccccccccc------cccc-cccccccccc
Confidence 236899999987543 222233332 22433 44444333221 1111 1147899999
Q ss_pred CCHHHHHHHHHHHHhcc
Q 011578 380 FNSEELAKILHIKMNNQ 396 (482)
Q Consensus 380 ~~~~~~~~il~~~l~~~ 396 (482)
++.++-.+++.......
T Consensus 157 L~~~ea~~L~~~~~~~~ 173 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRK 173 (287)
T ss_dssp --HHHHHHHHHHHHTSH
T ss_pred ccccccccccccccccc
Confidence 99999999999886543
No 394
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.82 E-value=1.9e-05 Score=81.55 Aligned_cols=123 Identities=21% Similarity=0.220 Sum_probs=100.0
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 127 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~ 127 (482)
+.--...||.+|+...|+..++.......++|..|..|+++|+.|..+.+.+++++|++++..+ ..+|.+|+
T Consensus 25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI- 96 (822)
T KOG3609|consen 25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAI- 96 (822)
T ss_pred hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHH-
Confidence 3445778999999999999998655456789999999999999999999999999999998766 34788888
Q ss_pred hccCCChHHHHHHHhhCCCCc----------cccCCCCCChhhhhhcCCCChHHHHHHHhhhHHH
Q 011578 128 YSIRSEDYATVKTLLEYNADC----------SAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQ 182 (482)
Q Consensus 128 ~~~~~~~~~~v~~Ll~~gad~----------~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~ 182 (482)
+.|...+|++++.+-... ...-..+-||+ ..|+..++.+++.+|+..|+..
T Consensus 97 ---~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPl-iLAAh~NnyEil~~Ll~kg~~i 157 (822)
T KOG3609|consen 97 ---AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPL-MLAAHLNNFEILQCLLTRGHCI 157 (822)
T ss_pred ---HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHH-HHHHHhcchHHHHHHHHcCCCC
Confidence 899999999999773332 12334578999 6677778888999998887653
No 395
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.82 E-value=0.0015 Score=64.72 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=26.0
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.++..++|.||+|+||||++..||..+...+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G 128 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKG 128 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 3456788999999999999999999886543
No 396
>PF14516 AAA_35: AAA-like domain
Probab=97.82 E-value=0.0015 Score=63.48 Aligned_cols=139 Identities=19% Similarity=0.196 Sum_probs=80.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc------------------ccc----------c
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE------------------FVG----------H 293 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~g----------~ 293 (482)
+...+.+.||..+|||++...+.+.+...++ ..+.++...+-.. .++ +
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~----~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~ 105 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGY----RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDE 105 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCC----EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHH
Confidence 4567889999999999999999988875443 3333443321110 000 0
Q ss_pred ---chhhHHHHHHh------cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-------CcEEEEEecCchhH
Q 011578 294 ---TGPKTRRRIKE------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-------GKVVVIFAGYSEPM 357 (482)
Q Consensus 294 ---~~~~~~~~~~~------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-------~~~~vi~~~~~~~~ 357 (482)
+.......|++ .++-||||||||.+....+ ...+.+..|....+. .++++|++..+...
T Consensus 106 ~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~-----~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~ 180 (331)
T PF14516_consen 106 EIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ-----IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDY 180 (331)
T ss_pred hcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc-----hHHHHHHHHHHHHHhcccCcccceEEEEEecCcccc
Confidence 11122222322 2457999999999986322 223444433333332 34666666554333
Q ss_pred HHHHhc-CccccCCCcceeeCCCCCHHHHHHHHHHH
Q 011578 358 KRVIAS-NEGFCRRVTKFFHFNDFNSEELAKILHIK 392 (482)
Q Consensus 358 ~~~~~~-~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 392 (482)
.. ... .+++ -+...|.++.++.+|...+++.+
T Consensus 181 ~~-~~~~~SPF--NIg~~i~L~~Ft~~ev~~L~~~~ 213 (331)
T PF14516_consen 181 II-LDINQSPF--NIGQPIELPDFTPEEVQELAQRY 213 (331)
T ss_pred cc-cCCCCCCc--ccccceeCCCCCHHHHHHHHHhh
Confidence 21 111 2333 44678999999999999988765
No 397
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.79 E-value=0.00052 Score=64.11 Aligned_cols=166 Identities=11% Similarity=0.153 Sum_probs=89.0
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
+++-.+++.+.+.++.+.+ ..+..|+||.|.+|+||++++|..|...+. .++.+..+.-
T Consensus 9 ~lVlf~~ai~hi~ri~RvL--------------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~-------~~~~i~~~~~ 67 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVL--------------SQPRGHALLVGVGGSGRQSLARLAAFICGY-------EVFQIEITKG 67 (268)
T ss_dssp -----HHHHHHHHHHHHHH--------------CSTTEEEEEECTTTSCHHHHHHHHHHHTTE-------EEE-TTTSTT
T ss_pred ceeeHHHHHHHHHHHHHHH--------------cCCCCCeEEecCCCccHHHHHHHHHHHhcc-------ceEEEEeeCC
Confidence 4667777777777765444 246688999999999999999988876554 5555543321
Q ss_pred cccccccchhhHHHHHHhc----CCcEEEEecccccccCC--------CCC------CChhHHHHHHHHHhhhc------
Q 011578 287 VGEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQ--------KAD------DKDYGIEALEEIMSVMD------ 342 (482)
Q Consensus 287 ~~~~~g~~~~~~~~~~~~a----~~~vl~iDE~d~l~~~~--------~~~------~~~~~~~~~~~ll~~l~------ 342 (482)
. -..+-...++.++..| ++.+++|++-+-..... .++ +.+....+++.+.....
T Consensus 68 y--~~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~ 145 (268)
T PF12780_consen 68 Y--SIKDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISD 145 (268)
T ss_dssp T--HHHHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--S
T ss_pred c--CHHHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCC
Confidence 0 0111112344555443 34777777644322110 001 12222333333332221
Q ss_pred --------------CC-cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhcc
Q 011578 343 --------------GG-KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 396 (482)
Q Consensus 343 --------------~~-~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 396 (482)
.+ .+++++....+.+....+..|+|..++ .+.-|.+-+.+.+..+...++++.
T Consensus 146 ~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~c-tIdW~~~W~~eaL~~Va~~~l~~~ 213 (268)
T PF12780_consen 146 SRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCC-TIDWFDPWPEEALLSVANKFLSDI 213 (268)
T ss_dssp SHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHS-EEEEEES--HHHHHHHHHHHCCHH
T ss_pred chHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhccc-EEEeCCcCCHHHHHHHHHHHHHhh
Confidence 11 234444433333344455679999877 677778888899999999988764
No 398
>PHA02774 E1; Provisional
Probab=97.78 E-value=0.00033 Score=70.97 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=23.0
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
..++|+||||||||++|-+|++.+.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999874
No 399
>PRK13695 putative NTPase; Provisional
Probab=97.77 E-value=0.00028 Score=61.87 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.2
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++|.|+||+||||+++.+++.+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999887753
No 400
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.77 E-value=0.00011 Score=63.72 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=22.3
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
+++++|+||+||||+.+.+.+.+...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~ 26 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK 26 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc
Confidence 58999999999999999999999543
No 401
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.77 E-value=9.5e-05 Score=64.63 Aligned_cols=33 Identities=30% Similarity=0.629 Sum_probs=26.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
.+++.||||+||||+|+.||+.+ ++..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~---------~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL---------GLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---------CCcEEcHhHH
Confidence 58999999999999999999984 4555654444
No 402
>PHA02624 large T antigen; Provisional
Probab=97.76 E-value=0.0003 Score=71.54 Aligned_cols=113 Identities=18% Similarity=0.133 Sum_probs=63.3
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccccchhhHHHHHHhcCCcEEEEecccccccCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 322 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~ 322 (482)
..++|+||||||||+++.+|.+.++. ..+.++.+...+. |.| -.+...+.+||++-.-....
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G-------~vlsVNsPt~ks~FwL~----------pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGG-------KSLNVNCPPDKLNFELG----------CAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC-------eEEEeeCCcchhHHHhh----------hhhhceEEEeeecccccccc
Confidence 36899999999999999999998843 4455554332111 111 12345788899885433311
Q ss_pred CCCCChhHHHHHHHHHhhhcCC-cE---------------EEEEecCchhHHHHHhcCccccCCCcceeeCCC
Q 011578 323 KADDKDYGIEALEEIMSVMDGG-KV---------------VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND 379 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~~~-~~---------------~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 379 (482)
..-+...+..-+.-|...+|+. .| -.|.|++...+ +..+.-||-.++.|..
T Consensus 495 ~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ney~i------P~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 495 KDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNEYLI------PQTVKARFAKVLDFKP 561 (647)
T ss_pred ccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecCccc------chhHHHHHHHhccccc
Confidence 1011111122235566777765 21 23334322222 4555668888888754
No 403
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.75 E-value=0.0002 Score=62.87 Aligned_cols=156 Identities=14% Similarity=0.135 Sum_probs=68.6
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCC
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKAD 325 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~ 325 (482)
++++||+|||||.+|-.+|+.++. +++..+.-....+..-.+++....-+...+. +||||-. +.. .--+
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~-------pvI~~Driq~y~~l~v~Sgrp~~~el~~~~R--iyL~~r~-l~~-G~i~ 72 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGA-------PVISLDRIQCYPELSVGSGRPTPSELKGTRR--IYLDDRP-LSD-GIIN 72 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH---------EEEEE-SGGG-GGGTTTTT---SGGGTT-EE--EES-----GGG--S--
T ss_pred EEEECCCCCChhHHHHHHHHHhCC-------CEEEecceecccccccccCCCCHHHHcccce--eeecccc-ccC-CCcC
Confidence 689999999999999999999987 8887776554444322233333222332233 7777532 211 0001
Q ss_pred CChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCCc-ceeeCCCCCHHHHHHHHHHHHhcccccccccc
Q 011578 326 DKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSLLYG 404 (482)
Q Consensus 326 ~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~ 404 (482)
..+.....+..+...-+ +..+|+=.++-.-+..+. .++-....|. .+..++.|+.+.-..-.++..+++-.
T Consensus 73 a~ea~~~Li~~v~~~~~-~~~~IlEGGSISLl~~m~-~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~------ 144 (233)
T PF01745_consen 73 AEEAHERLISEVNSYSA-HGGLILEGGSISLLNCMA-QDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLR------ 144 (233)
T ss_dssp HHHHHHHHHHHHHTTTT-SSEEEEEE--HHHHHHHH-H-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS------
T ss_pred HHHHHHHHHHHHHhccc-cCceEEeCchHHHHHHHH-hcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcC------
Confidence 12223333344433333 444444444444444443 3454444552 45556778876555544444444421
Q ss_pred ccccCcccHHHHHHHHHHH
Q 011578 405 FKLHSSCSMDAIAALIEKE 423 (482)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~ 423 (482)
...-....|.++..-.
T Consensus 145 ---p~~~~~Sll~EL~~lW 160 (233)
T PF01745_consen 145 ---PDSSGPSLLEELVALW 160 (233)
T ss_dssp -----SSS--HHHHHHHHH
T ss_pred ---CCCCCCcHHHHHHHHH
Confidence 1123456666666544
No 404
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.74 E-value=0.00026 Score=63.33 Aligned_cols=118 Identities=11% Similarity=0.176 Sum_probs=59.6
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH--HcCCCCCC---------CeEEeeccccccc---ccccchhhHHHHHHhcC---
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY--MVGILPTD---------RVTEVQRTDLVGE---FVGHTGPKTRRRIKEAE--- 306 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~--~~~~~~~~---------~~~~~~~~~~~~~---~~g~~~~~~~~~~~~a~--- 306 (482)
.-+++.||+|+||||+.|.|+.... ..|..... -|......+-... .+......+.++++...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 4678999999999999999997653 22321100 0111111111000 11111244666777654
Q ss_pred CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccc
Q 011578 307 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGF 367 (482)
Q Consensus 307 ~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l 367 (482)
+.+|++||.-.-.. ......+...+++.+.+....+|++|........++..+.+
T Consensus 106 p~llllDEp~~glD------~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v 160 (199)
T cd03283 106 PVLFLLDEIFKGTN------SRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAV 160 (199)
T ss_pred CeEEEEecccCCCC------HHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCe
Confidence 58999999743221 11122334455555544345556655544443343333333
No 405
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.74 E-value=0.00067 Score=67.66 Aligned_cols=249 Identities=19% Similarity=0.283 Sum_probs=131.7
Q ss_pred HHHHHHHh-hhhchHHHHHHHHHHHH-HHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc----CC
Q 011578 199 DELENELS-NIVGLHELKIQLRKWAK-GMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV----GI 272 (482)
Q Consensus 199 ~~~~~~l~-~i~G~~~~k~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~----~~ 272 (482)
+-+...+. .|.|++.+|+.|.-++- .+. +.-..|..+ ....++|+.|.|-|.||-|.|.+-+..... |-
T Consensus 293 dlLa~SLAPSI~GH~~vKkAillLLlGGvE---k~L~NGshl--RGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGR 367 (818)
T KOG0479|consen 293 DLLARSLAPSIYGHDYVKKAILLLLLGGVE---KNLENGSHL--RGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGR 367 (818)
T ss_pred HHHhhccCcccccHHHHHHHHHHHHhccce---eccCCCcee--ccceeEEEecCchHHHHHHHHHHHhcccccccccCC
Confidence 33333333 68999999998876431 111 111112222 234579999999999999999987754321 10
Q ss_pred CCCCCeEEeecccccccccccchhhHH-HHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcE-----
Q 011578 273 LPTDRVTEVQRTDLVGEFVGHTGPKTR-RRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV----- 346 (482)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~----- 346 (482)
-+++ +.+.++--..+-.| ++++. ..+-.|..||+.|||+|++.-- .+-++.+ .|+.+.|
T Consensus 368 GSSG--VGLTAAVTtD~eTG--ERRLEAGAMVLADRGVVCIDEFDKMsDi--------DRvAIHE---VMEQqtVTIaKA 432 (818)
T KOG0479|consen 368 GSSG--VGLTAAVTTDQETG--ERRLEAGAMVLADRGVVCIDEFDKMSDI--------DRVAIHE---VMEQQTVTIAKA 432 (818)
T ss_pred CCCC--ccceeEEeeccccc--hhhhhcCceEEccCceEEehhcccccch--------hHHHHHH---HHhcceEEeEec
Confidence 0010 11111111111112 22221 2344567799999999999642 2233333 3444333
Q ss_pred -----------EEEEec--------CchhHHHHHhcCccccCCCcceeeC-CCCCHHHHH----HHHHHH--Hhcccc--
Q 011578 347 -----------VVIFAG--------YSEPMKRVIASNEGFCRRVTKFFHF-NDFNSEELA----KILHIK--MNNQTE-- 398 (482)
Q Consensus 347 -----------~vi~~~--------~~~~~~~~~~~~~~l~~R~~~~i~~-~~~~~~~~~----~il~~~--l~~~~~-- 398 (482)
++.+|+ +..|++ -+....+|++|||..|.+ ..-+.+.=. .+|+.+ +..-..
T Consensus 433 GIHasLNARCSVlAAANPvyG~Yd~~k~P~e-NIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dG 511 (818)
T KOG0479|consen 433 GIHASLNARCSVLAAANPVYGQYDQSKTPME-NIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDG 511 (818)
T ss_pred cchhhhccceeeeeecCccccccCCCCChhh-ccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCC
Confidence 333333 123332 223347788999876654 333322111 222222 100000
Q ss_pred -----c----------------------------------------------cccc-cccccCcccHHHHHHHHHHHhhH
Q 011578 399 -----D----------------------------------------------SLLY-GFKLHSSCSMDAIAALIEKETTE 426 (482)
Q Consensus 399 -----~----------------------------------------------~~~~-~~~~~~~~~~~~l~~~~~~~~~~ 426 (482)
. ...| ..++.|.++.++...+++.|++.
T Consensus 512 e~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k~~~~k~lti~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~L 591 (818)
T KOG0479|consen 512 EPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAKQQHEKLLTIDFMRKYIHYAKSRIKPKLTQEAAEYIAEEYTDL 591 (818)
T ss_pred CcccCCCcccccccccccccccchhHhhhhhhhhccccccccceeeHHHHHHHHHHHHhhcCccccHHHHHHHHHHHhhh
Confidence 0 0000 11355777888888888877643
Q ss_pred h---------hccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 427 K---------QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 427 ~---------~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
+ ...+..+|.|..++..|...+..|++ ..++.+|-+.|++-+
T Consensus 592 R~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlS---------k~V~~~DAe~A~~Ll 642 (818)
T KOG0479|consen 592 RNDDSRKDQERTSPITARTLETLIRLATAHAKARLS---------KVVEKDDAEAAVNLL 642 (818)
T ss_pred hccccccccccccCCcHHHHHHHHHHHHHHHHhhhc---------ceeehhhHHHHHHHH
Confidence 2 22345678999999999998888887 356777777776654
No 406
>PRK10536 hypothetical protein; Provisional
Probab=97.74 E-value=0.00022 Score=65.27 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.3
Q ss_pred CceeEecCCCCchHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.-+++.||+|||||++|.+++...
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999854
No 407
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.72 E-value=7e-05 Score=67.47 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~ 265 (482)
.+..+||||+||+|||++|+.++.
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC
Confidence 356699999999999999999974
No 408
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00016 Score=75.08 Aligned_cols=155 Identities=16% Similarity=0.194 Sum_probs=106.6
Q ss_pred HHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-----------------------cEEEEEecCch
Q 011578 299 RRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSE 355 (482)
Q Consensus 299 ~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-----------------------~~~vi~~~~~~ 355 (482)
...+.+|.+|||||||+..|....+ +.+|+.|..+ ++.+|+.++..
T Consensus 218 pGaVHkAngGVLiIdei~lL~~~~~-----------w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~ 286 (647)
T COG1067 218 PGAVHKANGGVLIIDEIGLLAQPLQ-----------WKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNRE 286 (647)
T ss_pred CcccccccCcEEEEEhhhhhCcHHH-----------HHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHH
Confidence 3567889999999999999986443 5566665432 35888888888
Q ss_pred hHHHHHhcCccccCCCcceeeC--CCC-CHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhH---hhc
Q 011578 356 PMKRVIASNEGFCRRVTKFFHF--NDF-NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE---KQR 429 (482)
Q Consensus 356 ~~~~~~~~~~~l~~R~~~~i~~--~~~-~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~ 429 (482)
.+..+...+|.++.-|....+| +.| +++.+.+.++.+.+...+. .--+.++.+++.++.....+. ...
T Consensus 287 ~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d------~~ip~~~~~Av~~li~~a~R~Ag~~~~ 360 (647)
T COG1067 287 DLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARD------GNIPHLDKDAVEELIREAARRAGDQNK 360 (647)
T ss_pred HHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhc------CCCCCCCHHHHHHHHHHHHHhccccce
Confidence 8877755555555544444444 555 5688888888888776531 112678999999988765532 222
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
-..+.|++.++|+.|.-.+ ..+....|+.+|+++|+++-.+
T Consensus 361 Ltl~~rdl~~lv~~A~~ia---------~~~~~~~I~ae~Ve~a~~~~~~ 401 (647)
T COG1067 361 LTLRLRDLGNLVREAGDIA---------VSEGRKLITAEDVEEALQKREL 401 (647)
T ss_pred eccCHHHHHHHHHHhhHHH---------hcCCcccCcHHHHHHHHHhhhh
Confidence 2457899999998776554 1223457999999999998543
No 409
>PRK04296 thymidine kinase; Provisional
Probab=97.72 E-value=0.00018 Score=63.90 Aligned_cols=26 Identities=12% Similarity=-0.114 Sum_probs=22.1
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
-.+++||||+|||+++..++..+...
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~ 29 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER 29 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc
Confidence 36789999999999999999887543
No 410
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.0035 Score=61.69 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=46.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCC--CCCCeEEeecccc--------ccc------ccccchhhHHHHHHhc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--PTDRVTEVQRTDL--------VGE------FVGHTGPKTRRRIKEA 305 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~--~~~~~~~~~~~~~--------~~~------~~g~~~~~~~~~~~~a 305 (482)
.+..++|.||+|+||||++..+|..+...... .+..++.+++-.. ..+ .+......+.+.+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 45678999999999999999999877532111 1122333332110 011 1223334455555444
Q ss_pred C-CcEEEEeccccccc
Q 011578 306 E-GGILFVDEAYRLIP 320 (482)
Q Consensus 306 ~-~~vl~iDE~d~l~~ 320 (482)
. .-+|+||++.....
T Consensus 253 ~~~DlVLIDTaGr~~~ 268 (388)
T PRK12723 253 KDFDLVLVDTIGKSPK 268 (388)
T ss_pred CCCCEEEEcCCCCCcc
Confidence 3 47999999987753
No 411
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.67 E-value=0.002 Score=61.38 Aligned_cols=187 Identities=18% Similarity=0.187 Sum_probs=100.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc---------------ccccccch----hhHH---
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV---------------GEFVGHTG----PKTR--- 299 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~g~~~----~~~~--- 299 (482)
-|..+.++|.+|||||.+.|.+-+.++. +.+-+++-+.. ..+-|... .++.
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r~~l~~~n~-------~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i 101 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLVRQLLRKLNL-------ENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFI 101 (438)
T ss_pred cceeEEEeccCCCchhHHHHHHHhhcCC-------cceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHH
Confidence 4566799999999999999999987744 33444433211 11112111 1111
Q ss_pred HHHHh---c--C--CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCC-
Q 011578 300 RRIKE---A--E--GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV- 371 (482)
Q Consensus 300 ~~~~~---a--~--~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~- 371 (482)
..|++ + + .-+|++|.+|.+.-.. ...-..+-.|.+.+....+++++....-+..-. .+ .+-+
T Consensus 102 ~~l~q~~~~t~~d~~~~liLDnad~lrD~~-----a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~--~n---~g~~~ 171 (438)
T KOG2543|consen 102 YLLVQWPAATNRDQKVFLILDNADALRDMD-----AILLQCLFRLYELLNEPTIVIILSAPSCEKQYL--IN---TGTLE 171 (438)
T ss_pred HHHHhhHHhhccCceEEEEEcCHHhhhccc-----hHHHHHHHHHHHHhCCCceEEEEeccccHHHhh--cc---cCCCC
Confidence 22333 1 2 3578889999986321 111233334444455666666665333222211 11 1222
Q ss_pred cceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhh
Q 011578 372 TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLR 451 (482)
Q Consensus 372 ~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r 451 (482)
...++||.|+.++..+|+.+-- + + ....+..+....-.+..-...-.+..+++.++..+..+...+
T Consensus 172 i~~l~fP~Ys~~e~~~Il~~~~---p------~-----~r~~~~ya~fl~v~l~vF~~~crd~~eL~~~~~~~wpky~ep 237 (438)
T KOG2543|consen 172 IVVLHFPQYSVEETQVILSRDN---P------G-----KRKLDVYAQFLHVLLQVFYMACRDVNELRSLISLAWPKYCEP 237 (438)
T ss_pred ceEEecCCCCHHHHHHHHhcCC---c------c-----ccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhccc
Confidence 4689999999999999997531 1 0 112222233333222222222235667777788887777777
Q ss_pred hcCCCCCh
Q 011578 452 LSFDCLDT 459 (482)
Q Consensus 452 ~~~~~~~~ 459 (482)
+..+.+++
T Consensus 238 i~~~~i~~ 245 (438)
T KOG2543|consen 238 ITKGKIDP 245 (438)
T ss_pred cccCCCCh
Confidence 76655443
No 412
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.00084 Score=65.47 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
....++|.||+|+||||++..||..+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999998764
No 413
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.66 E-value=0.00043 Score=78.73 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=38.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+++++|.+...+.+..++. ........+.++||+|+||||+|+++++.+..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~--------------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLH--------------LESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred ccccccchHHHHHHHHHHHc--------------cccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 45678898887777776531 11234456889999999999999999987754
No 414
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.62 E-value=0.00016 Score=70.66 Aligned_cols=82 Identities=21% Similarity=0.266 Sum_probs=52.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH-HHcCCCCCCCeEEeecccccccccccchhhHHHHHH-hcCCcEEEEecccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL-YMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-EAEGGILFVDEAYRLI 319 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~a~~~vl~iDE~d~l~ 319 (482)
...++++.||||||||.+|.+++... ...| -.++.+.++... .. +.+. -++..+|+|||+..+.
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG-------~f~T~a~Lf~~L----~~---~~lg~v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG-------GTITVAKLFYNI----ST---RQIGLVGRWDVVAFDEVATLK 273 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC-------CcCcHHHHHHHH----HH---HHHhhhccCCEEEEEcCCCCc
Confidence 55789999999999999999998872 2222 122333333221 11 2222 2345899999998876
Q ss_pred cCCCCCCChhHHHHHHHHHhhhcCC
Q 011578 320 PMQKADDKDYGIEALEEIMSVMDGG 344 (482)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ll~~l~~~ 344 (482)
-.++ ++.+..|...|++|
T Consensus 274 ~~~~-------~~~v~imK~yMesg 291 (449)
T TIGR02688 274 FAKP-------KELIGILKNYMESG 291 (449)
T ss_pred CCch-------HHHHHHHHHHHHhC
Confidence 5333 35677888888764
No 415
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.61 E-value=0.0003 Score=62.52 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=21.0
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
.-+.+.||+|||||++|-+.|-.+-..
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~v~~ 46 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALELVKE 46 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 358899999999999999999877543
No 416
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.60 E-value=4.3e-05 Score=62.55 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.9
Q ss_pred eeEecCCCCchHHHHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+++.||||+||||+|+.||+.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~ 25 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGF 25 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 689999999999999999998853
No 417
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.58 E-value=0.00035 Score=63.24 Aligned_cols=108 Identities=22% Similarity=0.273 Sum_probs=57.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc--------c----cc-----------cc---h
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE--------F----VG-----------HT---G 295 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~--------~----~g-----------~~---~ 295 (482)
...-++++||||+|||+++..++......+ ...+.++...+... + .+ +. -
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g----~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQG----KKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC----CeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 344578999999999999999988765432 23444444321000 0 00 00 1
Q ss_pred hhHHHHHHhcCCcEEEEecccccccCCCCCCCh----hHHHHHHHHHhhhcCCcEEEEEecC
Q 011578 296 PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKD----YGIEALEEIMSVMDGGKVVVIFAGY 353 (482)
Q Consensus 296 ~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~----~~~~~~~~ll~~l~~~~~~vi~~~~ 353 (482)
..+.+.+......+|+||-+..+......+... ...+.+..|........+.+++++.
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 112222333356899999999886422111111 1122233344444566777777753
No 418
>PRK06217 hypothetical protein; Validated
Probab=97.58 E-value=0.00023 Score=62.98 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+++.|+||+||||+|+.|++.++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5899999999999999999998764
No 419
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.55 E-value=0.0033 Score=62.76 Aligned_cols=217 Identities=17% Similarity=0.181 Sum_probs=99.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH-HcCCCCCCCeEEeecccccc----------c-----cc----ccchhh-HHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDLVG----------E-----FV----GHTGPK-TRR 300 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~-~~~~~~~~~~~~~~~~~~~~----------~-----~~----g~~~~~-~~~ 300 (482)
.|..++|.||||+||||++..+|..+. ..+. .+.-+++..... . ++ +..... ..+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~----kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~ 173 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK----KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARR 173 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC----eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHH
Confidence 456788999999999999999999874 2222 333333332110 1 01 111212 233
Q ss_pred HHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEE-ecCchhHHHHHhcCccccC--CCcce
Q 011578 301 RIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIF-AGYSEPMKRVIASNEGFCR--RVTKF 374 (482)
Q Consensus 301 ~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~-~~~~~~~~~~~~~~~~l~~--R~~~~ 374 (482)
.++.+ ..-+|+||=...+.. ++.....+..+...+....+++|+ +++........ ..+.. .++ -
T Consensus 174 al~~~~~~~~DvVIIDTaGr~~~------d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a---~~f~~~v~i~-g 243 (428)
T TIGR00959 174 ALEYAKENGFDVVIVDTAGRLQI------DEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTA---KTFNERLGLT-G 243 (428)
T ss_pred HHHHHHhcCCCEEEEeCCCcccc------CHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHH---HHHHhhCCCC-E
Confidence 44332 336899998766542 122233344444544444444444 44333322221 11222 222 2
Q ss_pred eeCCCCCHHHHHHHHHHHHhcccccccc--ccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhh
Q 011578 375 FHFNDFNSEELAKILHIKMNNQTEDSLL--YGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRL 452 (482)
Q Consensus 375 i~~~~~~~~~~~~il~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~ 452 (482)
+-+..+|...+.-.+............+ .|-.+ .++..-.-+.++.. .....++..+++.|.......-
T Consensus 244 iIlTKlD~~~~~G~~lsi~~~~~~PI~fi~~Ge~i-~dl~~f~p~~~~~~--------iLg~gD~~~l~e~~~~~~~~~~ 314 (428)
T TIGR00959 244 VVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKI-DDLEPFHPERMASR--------ILGMGDILSLVEKAQEVVDEEE 314 (428)
T ss_pred EEEeCccCcccccHHHHHHHHHCcCEEEEeCCCCh-hhCccCCHHHHHHH--------HhCCCChHHHHHHHHHhhCHHH
Confidence 2244555333322222222222111111 12122 12111111222222 2235678888888766431110
Q ss_pred cCCCCChhhhhcccHHHHHHHHHHHHhcC
Q 011578 453 SFDCLDTDELRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 453 ~~~~~~~~~~~~i~~~d~~~al~~~~~~~ 481 (482)
.......-..-..|.+||.+-++.+++.|
T Consensus 315 ~~~~~~~~~~~~f~l~d~~~q~~~~~kmG 343 (428)
T TIGR00959 315 AKKLAEKMKKGQFDLEDFLEQLRQIKKMG 343 (428)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 00000000112689999999999999988
No 420
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0013 Score=59.16 Aligned_cols=134 Identities=5% Similarity=-0.016 Sum_probs=87.9
Q ss_pred CceeEecCCC-CchHHHHHHHHHHHHHcCCCC--CCCeEEeeccccc---ccccccchhhHHHHHHh-------cCCcEE
Q 011578 244 PHMAFLGNPG-TGKTMVARILGRLLYMVGILP--TDRVTEVQRTDLV---GEFVGHTGPKTRRRIKE-------AEGGIL 310 (482)
Q Consensus 244 ~~~ll~GppG-tGKT~la~~la~~~~~~~~~~--~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~-------a~~~vl 310 (482)
...||.|..+ ++|..++.-+++.+...+... ...+..+.+..-. ++.+ +-..+|++.+. +...|+
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I--~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNI--SIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcc--cHHHHHHHHHHHhhCcccCCcEEE
Confidence 4689999997 999999999998875432111 1223333322100 1112 12334444332 233799
Q ss_pred EEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEE-ecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHH
Q 011578 311 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF-AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK 387 (482)
Q Consensus 311 ~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~ 387 (482)
+|+++|.+.. .+.|.||..+|+ ...++|+ ++.+..+ .|.+++|+ ..+.|+.|...+-.+
T Consensus 94 II~~ae~mt~-----------~AANALLKtLEEPP~~t~fILit~~~~~L------LpTIrSRC-q~i~~~~p~~~~~~e 155 (263)
T PRK06581 94 IIYSAELMNL-----------NAANSCLKILEDAPKNSYIFLITSRAASI------ISTIRSRC-FKINVRSSILHAYNE 155 (263)
T ss_pred EEechHHhCH-----------HHHHHHHHhhcCCCCCeEEEEEeCChhhC------chhHhhce-EEEeCCCCCHHHHHH
Confidence 9999999987 555999999998 3344444 5333333 78899999 999999999988888
Q ss_pred HHHHHHhccc
Q 011578 388 ILHIKMNNQT 397 (482)
Q Consensus 388 il~~~l~~~~ 397 (482)
+...++....
T Consensus 156 ~~~~~~~p~~ 165 (263)
T PRK06581 156 LYSQFIQPIA 165 (263)
T ss_pred HHHHhccccc
Confidence 8877766543
No 421
>PRK14532 adenylate kinase; Provisional
Probab=97.52 E-value=0.00019 Score=63.76 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=29.0
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccc
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF 290 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (482)
++++.||||+||||+|+.||+.++ +..++..+++.+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g---------~~~is~~d~lr~~ 38 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG---------MVQLSTGDMLRAA 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---------CeEEeCcHHHHHH
Confidence 589999999999999999998764 3456666665543
No 422
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.52 E-value=0.00042 Score=63.23 Aligned_cols=28 Identities=32% Similarity=0.603 Sum_probs=24.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..+++.||||+||||+|+.||+.++.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~ 32 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENL 32 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567999999999999999999998754
No 423
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.49 E-value=0.0014 Score=62.62 Aligned_cols=52 Identities=31% Similarity=0.413 Sum_probs=38.3
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
++.|+++..+++.+++...- .+. + ..-.-++|.||+|+|||++++.|-+-+.
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA-------~g~--~-~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAA-------QGL--E-ERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred cccCcHHHHHHHHHHHHHHH-------hcc--C-ccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 68999999988887643321 111 1 1334578999999999999999998775
No 424
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.49 E-value=0.00042 Score=57.69 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=22.4
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+++++||+|+|||+++-.++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 6899999999999999999888764
No 425
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.49 E-value=0.00027 Score=63.05 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=13.5
Q ss_pred CCcEEEEecccccccCCCC
Q 011578 306 EGGILFVDEAYRLIPMQKA 324 (482)
Q Consensus 306 ~~~vl~iDE~d~l~~~~~~ 324 (482)
.+++|+|||+..+.+++..
T Consensus 79 ~~~liviDEa~~~~~~r~~ 97 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSW 97 (193)
T ss_dssp TT-EEEETTGGGTSB---T
T ss_pred CCcEEEEECChhhcCCCcc
Confidence 5799999999999998774
No 426
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.47 E-value=0.00017 Score=69.75 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=25.9
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.......+++||||+|||++++.|++.+..
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 345667899999999999999999998865
No 427
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.47 E-value=0.00071 Score=66.38 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=63.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc------ccc----------c-chhhHHHHHHh
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE------FVG----------H-TGPKTRRRIKE 304 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~------~~g----------~-~~~~~~~~~~~ 304 (482)
+..-++++||||+|||+++..+|..+...+ .+++.++..+...+ .+| + .-..+.+.++.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g----~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRG----GKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcC----CeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 445688999999999999999998775422 24444443321111 111 1 11223344444
Q ss_pred cCCcEEEEecccccccCCCCC-C--ChhHHHHHHHHHhhhcCCcEEEEEec
Q 011578 305 AEGGILFVDEAYRLIPMQKAD-D--KDYGIEALEEIMSVMDGGKVVVIFAG 352 (482)
Q Consensus 305 a~~~vl~iDE~d~l~~~~~~~-~--~~~~~~~~~~ll~~l~~~~~~vi~~~ 352 (482)
....+|+||++..+......+ . ....++.+..|........+.+++++
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvg 207 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVG 207 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 567999999999886533211 1 22345666777777766666666654
No 428
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.45 E-value=0.00065 Score=60.12 Aligned_cols=112 Identities=20% Similarity=0.257 Sum_probs=64.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHc-CCCCCCCeEEeec-ccccccccccch-------------hh---HHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMV-GILPTDRVTEVQR-TDLVGEFVGHTG-------------PK---TRRRIK 303 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~-~~~~~~~~~~~~~-~~~~~~~~g~~~-------------~~---~~~~~~ 303 (482)
...+.|+.|||||||||+.|-||+.+... .-.....+.-++. +++.+-..|.-+ .+ +-.+++
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIr 215 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIR 215 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHH
Confidence 44678999999999999999999988541 1112223333333 344443333311 11 122344
Q ss_pred hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCcccc
Q 011578 304 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFC 368 (482)
Q Consensus 304 ~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~ 368 (482)
.-.+-|+++|||..... ..++++.+..|- -+|.+.+-+.++.+.. +|.|.
T Consensus 216 sm~PEViIvDEIGt~~d-------------~~A~~ta~~~GV-kli~TaHG~~iedl~k-rp~lk 265 (308)
T COG3854 216 SMSPEVIIVDEIGTEED-------------ALAILTALHAGV-KLITTAHGNGIEDLIK-RPTLK 265 (308)
T ss_pred hcCCcEEEEeccccHHH-------------HHHHHHHHhcCc-EEEEeeccccHHHhhc-ChhHH
Confidence 55668999999965431 245666665554 4556656666655532 34443
No 429
>PLN02200 adenylate kinase family protein
Probab=97.44 E-value=0.00038 Score=63.96 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=30.9
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 289 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (482)
...+..+++.||||+||||+|+.||+.++. ..++.++++.+
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~---------~his~gdllR~ 80 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGF---------KHLSAGDLLRR 80 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCC---------eEEEccHHHHH
Confidence 334566889999999999999999997743 45666665543
No 430
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.43 E-value=0.00011 Score=64.27 Aligned_cols=28 Identities=29% Similarity=0.622 Sum_probs=25.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++..++|+||||||||++|+.||+.++.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4568999999999999999999998864
No 431
>PRK06547 hypothetical protein; Provisional
Probab=97.41 E-value=0.00039 Score=60.54 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=24.8
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++..+++.|+||+|||++|+.|++.++.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~ 41 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGF 41 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45667889999999999999999997653
No 432
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.41 E-value=0.00065 Score=58.89 Aligned_cols=99 Identities=15% Similarity=0.163 Sum_probs=59.4
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-----------------ccccchhhHHHHHHhc-CC
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----------------FVGHTGPKTRRRIKEA-EG 307 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~g~~~~~~~~~~~~a-~~ 307 (482)
+++.|+||+|||++|..++...+ .+.+.+....-.+. ...+....+.+.++.. ..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~-------~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELG-------GPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC-------CCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCC
Confidence 57899999999999999987522 24444443321110 1223455667777554 45
Q ss_pred cEEEEecccccccCCCCCCC----hhHHHHHHHHHhhhcCCcEEEEEe
Q 011578 308 GILFVDEAYRLIPMQKADDK----DYGIEALEEIMSVMDGGKVVVIFA 351 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~----~~~~~~~~~ll~~l~~~~~~vi~~ 351 (482)
.+|+||=+..+....-..+. +...+.+..|+..+......+|+.
T Consensus 75 ~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viV 122 (169)
T cd00544 75 DVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILV 122 (169)
T ss_pred CEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEE
Confidence 79999998877654332211 223455677888876644433333
No 433
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.40 E-value=0.0008 Score=67.95 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=63.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccc------ccc-----------chhhHHHHHHh
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF------VGH-----------TGPKTRRRIKE 304 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~-----------~~~~~~~~~~~ 304 (482)
+..-++++||||+|||+++..++...... ..+++.++..+...+. +|. .-..+.+.+++
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~----g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAA----GGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 44468899999999999999999877532 2245555543322111 111 11223333444
Q ss_pred cCCcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcCCcEEEEEec
Q 011578 305 AEGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDGGKVVVIFAG 352 (482)
Q Consensus 305 a~~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~vi~~~ 352 (482)
....+|+||++..+....-.+ +....++.+..|.....+..+.+++++
T Consensus 155 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~ 205 (446)
T PRK11823 155 EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVG 205 (446)
T ss_pred hCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 466899999999886543211 122334566677777666565555553
No 434
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.40 E-value=0.00036 Score=60.64 Aligned_cols=94 Identities=11% Similarity=0.128 Sum_probs=55.1
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc----------------c-cccchhhHHHHHHh--c
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----------------F-VGHTGPKTRRRIKE--A 305 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-~g~~~~~~~~~~~~--a 305 (482)
.+++.||||+|||++|..++..++. +++.+........ | .-+....+.++++. .
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-------~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-------QVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-------CcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 4789999999999999999987542 2333332221100 1 11222345556654 2
Q ss_pred CCcEEEEecccccccCCCCCCC-hhHHHHHHHHHhhhcCCc
Q 011578 306 EGGILFVDEAYRLIPMQKADDK-DYGIEALEEIMSVMDGGK 345 (482)
Q Consensus 306 ~~~vl~iDE~d~l~~~~~~~~~-~~~~~~~~~ll~~l~~~~ 345 (482)
.+.+++||=+..+....-..+. +.....+..|+..+....
T Consensus 76 ~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~ 116 (170)
T PRK05800 76 PGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLP 116 (170)
T ss_pred CCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCC
Confidence 3578999988877553321111 233455677788876644
No 435
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.39 E-value=0.00066 Score=66.71 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=21.4
Q ss_pred ceeEecCCCCchHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+++.|.||||||.+|-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47889999999999999999988
No 436
>PLN02674 adenylate kinase
Probab=97.39 E-value=0.00025 Score=65.01 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=30.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 289 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (482)
+...+++.||||+||+|+|+.||+.++ +..++..+++..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~---------~~his~GdllR~ 68 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYC---------LCHLATGDMLRA 68 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcC---------CcEEchhHHHHH
Confidence 456799999999999999999999774 345555555443
No 437
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.37 E-value=0.0018 Score=58.12 Aligned_cols=112 Identities=16% Similarity=0.195 Sum_probs=57.9
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH--cCCCCCCCeEEeec----------cc----ccccccccchhhHHHHHHhc-C
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM--VGILPTDRVTEVQR----------TD----LVGEFVGHTGPKTRRRIKEA-E 306 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~--~~~~~~~~~~~~~~----------~~----~~~~~~g~~~~~~~~~~~~a-~ 306 (482)
.-+++.||+|+|||++.+.++..... .|.........+.. .+ -.+.+.++ -+.+..++..+ +
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e-~~~~~~il~~~~~ 108 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASE-MSETAYILDYADG 108 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHH-HHHHHHHHHhcCC
Confidence 45899999999999999999865432 22211111111111 00 01111111 12344455554 5
Q ss_pred CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHh
Q 011578 307 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIA 362 (482)
Q Consensus 307 ~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~ 362 (482)
+.++++||+.+=.. ......+...+++.+.+....++++|+...+...+.
T Consensus 109 ~~lvllDE~~~gt~------~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 109 DSLVLIDELGRGTS------SADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred CcEEEeccccCCCC------HHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 69999999853221 112223334555555544556666766555544443
No 438
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.35 E-value=0.0027 Score=57.13 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=56.1
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHH--HcCCCCCCC----------eEEeeccccccccccc---chhhHHHHHHhc-C
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLY--MVGILPTDR----------VTEVQRTDLVGEFVGH---TGPKTRRRIKEA-E 306 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~--~~~~~~~~~----------~~~~~~~~~~~~~~g~---~~~~~~~~~~~a-~ 306 (482)
...++++||.|+|||++.+.++.... ..|...... +..+...+.....++. ....+..++..+ .
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~ 108 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATP 108 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccC
Confidence 34689999999999999999994331 222111111 1111111111222222 222333444433 4
Q ss_pred CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHH
Q 011578 307 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 307 ~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~ 360 (482)
+.++++||...-... .....+...+++.+......+|++|+.......
T Consensus 109 ~~llllDEp~~gld~------~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~ 156 (202)
T cd03243 109 RSLVLIDELGRGTST------AEGLAIAYAVLEHLLEKGCRTLFATHFHELADL 156 (202)
T ss_pred CeEEEEecCCCCCCH------HHHHHHHHHHHHHHHhcCCeEEEECChHHHHHH
Confidence 599999998543221 112234455555554434455556554444333
No 439
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.34 E-value=0.00022 Score=65.85 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=25.7
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
......++++||+|+|||++++.+++.+..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 346678999999999999999999987753
No 440
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.33 E-value=0.0025 Score=57.68 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.7
Q ss_pred CceeEecCCCCchHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~ 266 (482)
..++++||.|+|||++.|.++..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 56899999999999999999953
No 441
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.32 E-value=0.0011 Score=59.27 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=22.2
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
-+++.||+|+||||+++++...+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4789999999999999999988763
No 442
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.29 E-value=0.00098 Score=71.44 Aligned_cols=88 Identities=24% Similarity=0.266 Sum_probs=53.9
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc----ccccccchhhHHHHHHh-------------cC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGHTGPKTRRRIKE-------------AE 306 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~-------------a~ 306 (482)
..+++.|+||||||++++++...+...+. ..++.-+.++.-. .+..|.....+.+.+.. ..
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~--~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~ 416 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGG--LLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPID 416 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC--CceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhcccc
Confidence 46889999999999999999998875431 0134444443211 12223222233333321 13
Q ss_pred CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC
Q 011578 307 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG 344 (482)
Q Consensus 307 ~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 344 (482)
..+|+|||+.++.. ..+..|+..+..+
T Consensus 417 ~~llIvDEaSMvd~-----------~~~~~Ll~~~~~~ 443 (720)
T TIGR01448 417 CDLLIVDESSMMDT-----------WLALSLLAALPDH 443 (720)
T ss_pred CCEEEEeccccCCH-----------HHHHHHHHhCCCC
Confidence 47999999988865 4457777777654
No 443
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.27 E-value=0.0021 Score=57.33 Aligned_cols=104 Identities=17% Similarity=0.262 Sum_probs=57.2
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc--------ccccc------c---ch-hhHHHHHHh
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV--------GEFVG------H---TG-PKTRRRIKE 304 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~--------~~~~g------~---~~-~~~~~~~~~ 304 (482)
|..++|.||+|+||||.+-.||..+... ..+..++..+..... .+..| . .. ....+.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3468899999999999999999988754 222233433322110 01111 1 11 223344443
Q ss_pred c---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 305 A---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 305 a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
. ..-+||||-..+... +....+-+..+++.+...++.+++..+.
T Consensus 79 ~~~~~~D~vlIDT~Gr~~~------d~~~~~el~~~~~~~~~~~~~LVlsa~~ 125 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGRSPR------DEELLEELKKLLEALNPDEVHLVLSATM 125 (196)
T ss_dssp HHHTTSSEEEEEE-SSSST------HHHHHHHHHHHHHHHSSSEEEEEEEGGG
T ss_pred HhhcCCCEEEEecCCcchh------hHHHHHHHHHHhhhcCCccceEEEeccc
Confidence 2 236999998754432 1222344566666776666766666443
No 444
>PRK00625 shikimate kinase; Provisional
Probab=97.26 E-value=0.00021 Score=62.28 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=23.3
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++|.|+||+|||++++.||+.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~ 26 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSL 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999998876
No 445
>PRK13808 adenylate kinase; Provisional
Probab=97.26 E-value=0.00089 Score=64.07 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.4
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++|+||||+|||++++.|++.++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl 26 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGI 26 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999997743
No 446
>PRK03839 putative kinase; Provisional
Probab=97.26 E-value=0.0002 Score=63.19 Aligned_cols=25 Identities=40% Similarity=0.640 Sum_probs=23.0
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+++.|+||+||||+++.||+.++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998865
No 447
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.25 E-value=0.002 Score=71.63 Aligned_cols=131 Identities=18% Similarity=0.260 Sum_probs=81.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc------ccccc-cccchhhH----HHHHH-hcCCcE
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD------LVGEF-VGHTGPKT----RRRIK-EAEGGI 309 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~------~~~~~-~g~~~~~~----~~~~~-~a~~~v 309 (482)
..++++|.|.||+|||++..++|+..+. .++.++.++ +++.+ .++.+... ...+. ...|+-
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~-------kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~W 1614 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGK-------KLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGW 1614 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcC-------ceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCE
Confidence 3467999999999999999999998876 777777764 33332 22211111 11222 235689
Q ss_pred EEEecccccccCCCCCCChhHHHHHHHHHhhhc-----------C-----CcEEEEEecCchhHH---HHHhcCccccCC
Q 011578 310 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD-----------G-----GKVVVIFAGYSEPMK---RVIASNEGFCRR 370 (482)
Q Consensus 310 l~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~-----------~-----~~~~vi~~~~~~~~~---~~~~~~~~l~~R 370 (482)
+++||+.-... .++.-|-..+| . ..+.|++|-++...- .. .+..+..|
T Consensus 1615 VlLDEiNLaSQ-----------SVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKg--LPkSF~nR 1681 (4600)
T COG5271 1615 VLLDEINLASQ-----------SVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKG--LPKSFLNR 1681 (4600)
T ss_pred EEeehhhhhHH-----------HHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCccc--CCHHHhhh
Confidence 99999954332 33333333333 1 335666664333211 11 13567789
Q ss_pred CcceeeCCCCCHHHHHHHHHHHH
Q 011578 371 VTKFFHFNDFNSEELAKILHIKM 393 (482)
Q Consensus 371 ~~~~i~~~~~~~~~~~~il~~~l 393 (482)
| .++.+..++.+++..|+..+.
T Consensus 1682 F-svV~~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1682 F-SVVKMDGLTTDDITHIANKMY 1703 (4600)
T ss_pred h-heEEecccccchHHHHHHhhC
Confidence 9 888899999999998887654
No 448
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.23 E-value=0.0025 Score=58.49 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=20.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+...+++.||||||||++|..++..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44568999999999999986655544
No 449
>PLN02459 probable adenylate kinase
Probab=97.23 E-value=0.0011 Score=61.10 Aligned_cols=38 Identities=42% Similarity=0.586 Sum_probs=29.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG 288 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 288 (482)
.+..++|.||||+||||+|+.||+.++ +..++..+++.
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~---------~~~is~gdllR 65 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLG---------VPHIATGDLVR 65 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhC---------CcEEeCcHHHH
Confidence 445689999999999999999999774 34555555543
No 450
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.22 E-value=0.0014 Score=57.95 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=22.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
++.-++|.||||+|||++++.|.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45568899999999999999998754
No 451
>PRK06762 hypothetical protein; Provisional
Probab=97.22 E-value=0.00048 Score=59.80 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.9
Q ss_pred CceeEecCCCCchHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.-++++|+||+||||+|+.|++.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999977
No 452
>PRK05973 replicative DNA helicase; Provisional
Probab=97.21 E-value=0.006 Score=55.74 Aligned_cols=106 Identities=14% Similarity=0.118 Sum_probs=56.4
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc----cccc----------c-----c---c-cc-hh
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD----LVGE----------F-----V---G-HT-GP 296 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~----~~~~----------~-----~---g-~~-~~ 296 (482)
.+..-+++.|+||+|||+++-.++......|. +.+.++..+ +... + + . .+ ..
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge----~vlyfSlEes~~~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~~~ 137 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGR----TGVFFTLEYTEQDVRDRLRALGADRAQFADLFEFDTSDAICADY 137 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC----eEEEEEEeCCHHHHHHHHHHcCCChHHhccceEeecCCCCCHHH
Confidence 34456889999999999999998876643221 222222111 0000 0 0 0 01 11
Q ss_pred hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecC
Q 011578 297 KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 353 (482)
Q Consensus 297 ~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~ 353 (482)
.+..+.......+|+||=+..+..... ..+ ....+..|.....+..+.+|+++.
T Consensus 138 ii~~l~~~~~~~lVVIDsLq~l~~~~~--~~e-l~~~~~~Lk~~Ak~~gitvIl~sQ 191 (237)
T PRK05973 138 IIARLASAPRGTLVVIDYLQLLDQRRE--KPD-LSVQVRALKSFARERGLIIVFISQ 191 (237)
T ss_pred HHHHHHHhhCCCEEEEEcHHHHhhccc--chh-HHHHHHHHHHHHHhCCCeEEEEec
Confidence 233344434568999998877743222 122 233344555555565666666643
No 453
>PLN02840 tRNA dimethylallyltransferase
Probab=97.21 E-value=0.002 Score=63.47 Aligned_cols=105 Identities=15% Similarity=0.204 Sum_probs=58.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccc-cccchhhHHHHHHhcCCcEEEEecccccccC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF-VGHTGPKTRRRIKEAEGGILFVDEAYRLIPM 321 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~ 321 (482)
...+++.||+|+|||++|..||+.++. .++..+...+...+ +| +.+...+ +.+.-.=-|||-++ +.
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~~-------~iis~Ds~qvYr~~~Ig-TaKpt~e--E~~~V~Hhlidil~---p~ 87 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLNG-------EIISADSVQVYRGLDVG-SAKPSLS--ERKEVPHHLIDILH---PS 87 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCCC-------CeEeccccceecceeEE-cCCCCHH--HHcCCCeEeEeecC---CC
Confidence 345889999999999999999998754 45554433222111 11 1111111 11111223444443 22
Q ss_pred CCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHH
Q 011578 322 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~ 360 (482)
...+-..+...+...+-...+.|++.||+.+|.--+..+
T Consensus 88 e~ySv~~F~~~A~~~I~~i~~rgkiPIvVGGTGlYl~aL 126 (421)
T PLN02840 88 DDYSVGAFFDDARRATQDILNRGRVPIVAGGTGLYLRWY 126 (421)
T ss_pred CceeHHHHHHHHHHHHHHHHhcCCCEEEEcCccHHHHHH
Confidence 222334566677666666777788877777665555444
No 454
>PF13245 AAA_19: Part of AAA domain
Probab=97.20 E-value=0.00081 Score=49.69 Aligned_cols=25 Identities=44% Similarity=0.676 Sum_probs=18.1
Q ss_pred CceeEecCCCCchH-HHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKT-MVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT-~la~~la~~~~ 268 (482)
..+++.|||||||| ++++.++..+.
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34666999999999 56666666553
No 455
>PRK13947 shikimate kinase; Provisional
Probab=97.20 E-value=0.00027 Score=61.77 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=23.5
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++++.|+||||||++|+.||+.++.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999999976
No 456
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.19 E-value=0.0019 Score=64.34 Aligned_cols=119 Identities=21% Similarity=0.216 Sum_probs=68.2
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhc---CCcEEEEecccccccC
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPM 321 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~ 321 (482)
-++++||-+|||||+.+.+.+.+.. ..+.++..++......- ......+... +...||||||+.+-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~-------~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~~- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLE-------EIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVPD- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCc-------ceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCchh-
Confidence 7889999999999999777774432 24555555543332211 1111222222 337999999987642
Q ss_pred CCCCCChhHHHHHHHHHhhhcCCcE-EEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHH
Q 011578 322 QKADDKDYGIEALEEIMSVMDGGKV-VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK 387 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~l~~~~~-~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~ 387 (482)
... .+-...|.+.. +++.++ +..+. .....+.|.+|. ..+.+.|++-.|...
T Consensus 109 --------W~~---~lk~l~d~~~~~v~itgs-ss~ll-~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 --------WER---ALKYLYDRGNLDVLITGS-SSSLL-SKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred --------HHH---HHHHHHccccceEEEECC-chhhh-ccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 123 33334444442 333332 22221 112246678885 888999999888854
No 457
>PRK14974 cell division protein FtsY; Provisional
Probab=97.19 E-value=0.0061 Score=58.86 Aligned_cols=30 Identities=37% Similarity=0.515 Sum_probs=25.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.+.-++|.||||+||||++..+|..+...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 456789999999999999999999886543
No 458
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.00027 Score=58.03 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=24.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..+++|++|-|||||||++..||..++.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~ 33 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGL 33 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCC
Confidence 3568999999999999999999987754
No 459
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.025 Score=55.19 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=45.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc--c---cc---------ccccchhhHHHHHHhcC-
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL--V---GE---------FVGHTGPKTRRRIKEAE- 306 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~--~---~~---------~~g~~~~~~~~~~~~a~- 306 (482)
.+..++|.||+|+||||++..||..+...+. +..++..+.-.. . .. ++..+...+.+.+....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~Gk--kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKK--TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 3567899999999999999999998864332 112232222110 0 01 11234555555554432
Q ss_pred ---CcEEEEecccccc
Q 011578 307 ---GGILFVDEAYRLI 319 (482)
Q Consensus 307 ---~~vl~iDE~d~l~ 319 (482)
.-+||||-..+..
T Consensus 318 ~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 318 EARVDYILIDTAGKNY 333 (436)
T ss_pred ccCCCEEEEeCccccC
Confidence 4799999876654
No 460
>PRK14529 adenylate kinase; Provisional
Probab=97.16 E-value=0.0013 Score=59.60 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=22.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++|.||||+||||+++.|++.++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5889999999999999999998865
No 461
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.16 E-value=0.00053 Score=64.80 Aligned_cols=107 Identities=18% Similarity=0.135 Sum_probs=59.5
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEE--eecccccccccccchhhHHHHH-Hh-cCCcEEEEecc
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE--VQRTDLVGEFVGHTGPKTRRRI-KE-AEGGILFVDEA 315 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~-~~-a~~~vl~iDE~ 315 (482)
...+.++.|||+-|+|||+|.-.....+..... ....|.. .....-.....|++.. +..+- +- +..-||.|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k-~R~HFh~FM~~vH~~l~~l~g~~dp-l~~iA~~~~~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERK-RRLHFHRFMARVHQRLHTLQGQTDP-LPPIADELAAETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCcccc-ccccHHHHHHHHHHHHHHHcCCCCc-cHHHHHHHHhcCCEEEeeee
Confidence 457789999999999999999988886643110 0111100 0000111223355421 22221 11 23479999998
Q ss_pred cccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchh
Q 011578 316 YRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEP 356 (482)
Q Consensus 316 d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~ 356 (482)
.-=-. ..--++..|++.|=...|++|+|++..|
T Consensus 140 ~VtDI--------~DAMiL~rL~~~Lf~~GV~lvaTSN~~P 172 (367)
T COG1485 140 EVTDI--------ADAMILGRLLEALFARGVVLVATSNTAP 172 (367)
T ss_pred eecCh--------HHHHHHHHHHHHHHHCCcEEEEeCCCCh
Confidence 53221 1125677888877666677777765444
No 462
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.15 E-value=0.00048 Score=56.71 Aligned_cols=30 Identities=27% Similarity=0.248 Sum_probs=25.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
+...++|.|+.|+|||+++|.+++.++...
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~ 50 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQG 50 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCC
Confidence 445688999999999999999999887543
No 463
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.15 E-value=0.00032 Score=62.05 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=27.6
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 289 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (482)
++++||||+||||+|+.||+.++ +..++.++++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~---------~~~is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG---------FTHLSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---------CeEEECChHHHH
Confidence 68999999999999999999774 355666665543
No 464
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.15 E-value=0.003 Score=58.25 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=22.5
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.....++++||||+|||+++..++...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 345568899999999999999997654
No 465
>PRK13764 ATPase; Provisional
Probab=97.14 E-value=0.0036 Score=64.82 Aligned_cols=76 Identities=18% Similarity=0.275 Sum_probs=42.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCC-C-CCeEEeecccccccc--cccchhhHHHHHHhcCCcEEEEecccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-T-DRVTEVQRTDLVGEF--VGHTGPKTRRRIKEAEGGILFVDEAYR 317 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-~-~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~a~~~vl~iDE~d~ 317 (482)
...+++++||||+||||++++++..+...+... + ..-.++.....+.+| .+.......+.+-..++-+|++||+-.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKLEGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeeccccHHHHHHHHHhhCCCEEEECCCCC
Confidence 346799999999999999999999886433110 0 000011111122222 111112222333345689999999953
No 466
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.13 E-value=0.00027 Score=59.66 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.8
Q ss_pred eeEecCCCCchHHHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~ 268 (482)
+++.||||+||||+|+.+++.++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68999999999999999998664
No 467
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.13 E-value=0.0032 Score=60.19 Aligned_cols=107 Identities=17% Similarity=0.247 Sum_probs=58.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc----cccc------------cch---hhHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVG------------HTG---PKTRRRI 302 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~----~~~g------------~~~---~~~~~~~ 302 (482)
+..-++++||||||||+||-.++......+ +.++.++...... +.+| ..+ ..+..++
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g----~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAG----GTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC----CcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 344578999999999999998877665432 2444443321100 0001 011 1122223
Q ss_pred HhcCCcEEEEecccccccCCC--CC--CC--hhHH----HHHHHHHhhhcCCcEEEEEec
Q 011578 303 KEAEGGILFVDEAYRLIPMQK--AD--DK--DYGI----EALEEIMSVMDGGKVVVIFAG 352 (482)
Q Consensus 303 ~~a~~~vl~iDE~d~l~~~~~--~~--~~--~~~~----~~~~~ll~~l~~~~~~vi~~~ 352 (482)
++....+|+||-+..+.+... +. +. .... +.+..|...+....+.+|+++
T Consensus 130 ~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tN 189 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFIN 189 (321)
T ss_pred hccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 333458999999999886422 11 11 1111 344555555666777777774
No 468
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.13 E-value=0.00036 Score=59.70 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=22.7
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+++++||||+|||++|+.||+.++.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~ 25 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGL 25 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998865
No 469
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.12 E-value=0.00097 Score=60.63 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=22.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++++||||+||||+|+.||+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~ 26 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGI 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999998754
No 470
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.00034 Score=58.40 Aligned_cols=24 Identities=46% Similarity=0.648 Sum_probs=22.2
Q ss_pred eeEecCCCCchHHHHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+-+.|||||||||+|+.||+.++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCC
Confidence 568899999999999999999976
No 471
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.11 E-value=0.0059 Score=54.02 Aligned_cols=110 Identities=16% Similarity=0.215 Sum_probs=55.1
Q ss_pred eeEecCCCCchHHHHHHHHHHHH--HcCCCCCCCeEEeecc----------ccccccccc---chhhHHHHHHhc-CCcE
Q 011578 246 MAFLGNPGTGKTMVARILGRLLY--MVGILPTDRVTEVQRT----------DLVGEFVGH---TGPKTRRRIKEA-EGGI 309 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~g~---~~~~~~~~~~~a-~~~v 309 (482)
++++||.|.|||++.|.++-... ..|......-..+... +...+..+. .-..+..++..+ .+.+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999994332 2222111111111111 111111111 112233444443 5589
Q ss_pred EEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhHHHHH
Q 011578 310 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRVI 361 (482)
Q Consensus 310 l~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~~~~~ 361 (482)
+++||...-.. ......+...+++.+.+ ....++++|+...+....
T Consensus 82 lllDEp~~g~d------~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 82 VLLDELGRGTS------TYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLA 128 (185)
T ss_pred EEEecCCCCCC------HHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHh
Confidence 99999854332 12233444566665543 234455555544554443
No 472
>PRK13948 shikimate kinase; Provisional
Probab=97.10 E-value=0.00049 Score=60.42 Aligned_cols=43 Identities=23% Similarity=0.368 Sum_probs=32.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH 293 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 293 (482)
++..++|.|++|+|||++++.||+.++. +|+. ...+..+..|.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~-------~~iD--~D~~ie~~~g~ 51 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML-------HFID--TDRYIERVTGK 51 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC-------CEEE--CCHHHHHHHhC
Confidence 5678999999999999999999998876 6664 33444444443
No 473
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.10 E-value=0.0039 Score=55.96 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.5
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.++|+||.|+|||++.|.++.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 599999999999999999983
No 474
>PRK08233 hypothetical protein; Provisional
Probab=97.10 E-value=0.0018 Score=57.05 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.8
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.-+.+.|+||+||||+|+.|+..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4577889999999999999998764
No 475
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.09 E-value=0.0005 Score=49.89 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=20.4
Q ss_pred eeEecCCCCchHHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~ 267 (482)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999977
No 476
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.09 E-value=0.0021 Score=56.95 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
....+++.||+|+||||+.++++..+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 456799999999999999999998664
No 477
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.09 E-value=0.0039 Score=57.11 Aligned_cols=105 Identities=20% Similarity=0.187 Sum_probs=61.3
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHc-CCCCCCCeEEeecccccc-----------------------------cc
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMV-GILPTDRVTEVQRTDLVG-----------------------------EF 290 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~-~~~~~~~~~~~~~~~~~~-----------------------------~~ 290 (482)
.....+++.||||||||+++..++...... +. +.+.++..+-.. ..
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge----~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGE----KVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT------EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC----cEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccc
Confidence 345668999999999999999877544322 21 333333322100 00
Q ss_pred -------cccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEec
Q 011578 291 -------VGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG 352 (482)
Q Consensus 291 -------~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~ 352 (482)
+.+-...+.+.++..+..+++||-+..+.. . .+....+..+..|...+.+..++++++.
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~-~--~~~~~~r~~l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLL-Y--DDPEELRRFLRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTT-S--SSGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhh-c--CCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 001123344555666679999999998822 1 1234455677888888876555555543
No 478
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.08 E-value=0.0046 Score=57.88 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.9
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.++++.||||+||||+.+.++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 6899999999999999999998664
No 479
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.06 E-value=0.0098 Score=52.01 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=22.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+...+.+.||+|+||||+.+.|+..+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45568899999999999999999754
No 480
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.06 E-value=0.0088 Score=56.03 Aligned_cols=97 Identities=18% Similarity=0.156 Sum_probs=53.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee-ccccc-----ccccc-cchhhHHHHHHh---cCCcEEEE
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ-RTDLV-----GEFVG-HTGPKTRRRIKE---AEGGILFV 312 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~g-~~~~~~~~~~~~---a~~~vl~i 312 (482)
...+++.||+|+||||+.+++...+.... ..++.+. +.++. .-.+. +.+....+.++. ..+-+|+|
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~----~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~v 155 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPE----KNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMV 155 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCC----CeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEe
Confidence 34589999999999999999987664211 1222221 11111 00111 111122233332 35689999
Q ss_pred ecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhH
Q 011578 313 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM 357 (482)
Q Consensus 313 DE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~ 357 (482)
+|+..- +....+++....|.. ++.|.+.+..
T Consensus 156 gEiR~~-------------e~a~~~~~aa~tGh~-v~tTlHa~~~ 186 (264)
T cd01129 156 GEIRDA-------------ETAEIAVQAALTGHL-VLSTLHTNDA 186 (264)
T ss_pred ccCCCH-------------HHHHHHHHHHHcCCc-EEEEeccCCH
Confidence 999532 333566777777776 4555444443
No 481
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0072 Score=53.36 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=22.7
Q ss_pred CCCCCCceeEecCCCCchHHHHHHHHH
Q 011578 239 GARRPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 239 ~~~~~~~~ll~GppGtGKT~la~~la~ 265 (482)
.......+.+.||+|+||||+.|+|..
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 344556788999999999999999975
No 482
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.05 E-value=0.00048 Score=56.80 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=20.5
Q ss_pred eeEecCCCCchHHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~ 267 (482)
|++.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999986
No 483
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.05 E-value=0.00086 Score=65.36 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=26.1
Q ss_pred CCCCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 239 GARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 239 ~~~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.......+++.||||+|||++++.+++.+..
T Consensus 164 pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 164 PIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred EeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 3446667999999999999999999997754
No 484
>PRK13949 shikimate kinase; Provisional
Probab=97.04 E-value=0.00039 Score=60.49 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=23.3
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++++.||||+|||++++.||+.++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5899999999999999999998875
No 485
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.03 E-value=0.00066 Score=59.95 Aligned_cols=50 Identities=28% Similarity=0.330 Sum_probs=31.2
Q ss_pred hhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 208 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 208 i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
++|.++..+++...+. . .....+..++++||||+|||++.+.+...+...
T Consensus 2 fvgR~~e~~~l~~~l~-~------------~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-A------------AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTG-G------------TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-H------------HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4677777777776532 1 223456789999999999999999999988764
No 486
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.02 E-value=0.0022 Score=69.08 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=45.8
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc----ccccchhhHHHHH---Hh-----cCCcEEE
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVGHTGPKTRRRI---KE-----AEGGILF 311 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~---~~-----a~~~vl~ 311 (482)
.-+++.|+||||||++++++...+...+. .++.+.++....+ ..|.....+...+ .. ....+|+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~----~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llI 444 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGY----RVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLV 444 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCC----eEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEE
Confidence 45789999999999999999887765442 4555555433222 2232222232221 11 2347999
Q ss_pred Eeccccccc
Q 011578 312 VDEAYRLIP 320 (482)
Q Consensus 312 iDE~d~l~~ 320 (482)
|||+-++..
T Consensus 445 vDEasMv~~ 453 (744)
T TIGR02768 445 IDEAGMVGS 453 (744)
T ss_pred EECcccCCH
Confidence 999988765
No 487
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.02 E-value=0.0014 Score=59.39 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.6
Q ss_pred eeEecCCCCchHHHHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+++.||||+||||+|+.||+.++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~ 25 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGL 25 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 789999999999999999987643
No 488
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.01 E-value=0.011 Score=52.14 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.5
Q ss_pred CceeEecCCCCchHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..+++.||||+||+++++.|....
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcC
Confidence 468999999999999999999864
No 489
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.01 E-value=0.0054 Score=68.44 Aligned_cols=130 Identities=22% Similarity=0.338 Sum_probs=84.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc------ccccccccchhhH---HHHHHhc--CCcEE
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD------LVGEFVGHTGPKT---RRRIKEA--EGGIL 310 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~---~~~~~~a--~~~vl 310 (482)
...++|+.||.-+|||++...+|++.+. .|+.++..+ .++.|+......+ ..++-.| +|--|
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tgh-------kfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWI 959 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGH-------KFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWI 959 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCc-------cEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEE
Confidence 4457999999999999999999998876 788887653 3344443321111 1222222 45678
Q ss_pred EEecccccccCCCCCCChhHHHHHHHHHhhhcCCc---------------EEEEEecCchhHH----HHHhcCccccCCC
Q 011578 311 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMK----RVIASNEGFCRRV 371 (482)
Q Consensus 311 ~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---------------~~vi~~~~~~~~~----~~~~~~~~l~~R~ 371 (482)
++||..-... .++.+|-..+|+++ -+.++||.+.|.- ..+ ..|++.||
T Consensus 960 VLDELNLApT-----------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~L--SrAFRNRF 1026 (4600)
T COG5271 960 VLDELNLAPT-----------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGL--SRAFRNRF 1026 (4600)
T ss_pred EeeccccCcH-----------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHH--HHHHHhhh
Confidence 8899854333 56666666666532 1344444332211 111 46788899
Q ss_pred cceeeCCCCCHHHHHHHHHHH
Q 011578 372 TKFFHFNDFNSEELAKILHIK 392 (482)
Q Consensus 372 ~~~i~~~~~~~~~~~~il~~~ 392 (482)
..++|..-..+|+..|++..
T Consensus 1027 -lE~hFddipedEle~ILh~r 1046 (4600)
T COG5271 1027 -LEMHFDDIPEDELEEILHGR 1046 (4600)
T ss_pred -HhhhcccCcHHHHHHHHhcc
Confidence 88999999999999999754
No 490
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.00 E-value=0.00044 Score=59.17 Aligned_cols=26 Identities=27% Similarity=0.566 Sum_probs=24.4
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+++|.|++|+||||+.+.||+.++.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~ 28 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNL 28 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCC
Confidence 57999999999999999999999987
No 491
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.00 E-value=0.00046 Score=60.52 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.8
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.-++|.||||+||||+|+.|++.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 35889999999999999999998754
No 492
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.99 E-value=0.0052 Score=67.38 Aligned_cols=84 Identities=19% Similarity=0.209 Sum_probs=51.8
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccc----cccchhhHHHHHHh--------cCCcEEEE
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF----VGHTGPKTRRRIKE--------AEGGILFV 312 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~--------a~~~vl~i 312 (482)
-+++.|+||||||++.+++...+...+. .++.+.++....+- .|-....+...+.. ....||+|
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~----~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIV 439 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGY----EVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVI 439 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCC----eEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEE
Confidence 5779999999999999988877765443 45555554432222 23223333333321 13369999
Q ss_pred ecccccccCCCCCCChhHHHHHHHHHhhhcC
Q 011578 313 DEAYRLIPMQKADDKDYGIEALEEIMSVMDG 343 (482)
Q Consensus 313 DE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~ 343 (482)
||+-++.. +.+..|+.....
T Consensus 440 DEASMv~~-----------~~m~~LL~~a~~ 459 (988)
T PRK13889 440 DEAGMVGT-----------RQLERVLSHAAD 459 (988)
T ss_pred ECcccCCH-----------HHHHHHHHhhhh
Confidence 99988765 344666665544
No 493
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.99 E-value=0.014 Score=50.31 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+...++.||.|+|||++.++++-.+..
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~~~ 47 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLALGG 47 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 357889999999999999998876654
No 494
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.99 E-value=0.0012 Score=37.78 Aligned_cols=22 Identities=45% Similarity=0.714 Sum_probs=10.3
Q ss_pred CChHHHHHHhCCcHHHHHHHHc
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLE 69 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~ 69 (482)
|.||+|+|+..++.+++++|++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~ 23 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLD 23 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHH
Confidence 3444444444444444444444
No 495
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.97 E-value=0.0038 Score=58.75 Aligned_cols=102 Identities=19% Similarity=0.295 Sum_probs=55.3
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccc-cccchhhHHHHHHhcCCcEEEEecccccccCCCC
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF-VGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKA 324 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~ 324 (482)
+++.||+|+|||++|..||+.++. .++.++...+...+ +| |.+...+-.+.. .=-|+|-++ +....
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~-------~iis~Ds~qvY~~l~Ig-Takp~~~e~~~v--~hhlid~~~---~~~~~ 68 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNA-------EIISVDSMQIYKGMDIG-TAKPSLQEREGI--PHHLIDILD---PSESY 68 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC-------cEEEechhheeeecccc-CCCCCHHHHcCc--cEEEEEEec---hhheE
Confidence 678999999999999999997743 55555543332221 11 111111111111 223444322 11112
Q ss_pred CCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHH
Q 011578 325 DDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 325 ~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~ 360 (482)
+-.++...+...+-+.++.|++.|++.+|.--+..+
T Consensus 69 ~v~~f~~~a~~~i~~~~~~g~~pi~vGGTg~Yi~al 104 (287)
T TIGR00174 69 SAADFQTLALNAIADITARGKIPLLVGGTGLYLKAL 104 (287)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHH
Confidence 224455566666666677788777766655544444
No 496
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.96 E-value=0.0016 Score=60.73 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.6
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHc
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
++|.|+||+||||+|+.|++.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 6899999999999999999988753
No 497
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.96 E-value=0.011 Score=53.75 Aligned_cols=113 Identities=13% Similarity=0.101 Sum_probs=57.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH--HHcCCCCCCCeEEeecc----------ccccc---ccccchhhHHHHHHhc-
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL--YMVGILPTDRVTEVQRT----------DLVGE---FVGHTGPKTRRRIKEA- 305 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~--~~~~~~~~~~~~~~~~~----------~~~~~---~~g~~~~~~~~~~~~a- 305 (482)
....+++.||.|+|||++.+.++... ...|....+.-..+..- +-... .+...-..+..+++.+
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~ 109 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCT 109 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCC
Confidence 34568999999999999999999832 22222111111111111 11100 1222234455667765
Q ss_pred CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhHHHH
Q 011578 306 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 306 ~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~~~~ 360 (482)
...+++|||+.+=... ..+..+...+++.+.+ ....+|++|....+..+
T Consensus 110 ~~sLvllDE~~~gT~~------~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 110 SRSLVILDELGRGTST------HDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred CCeEEEEccCCCCCCh------hhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 4599999998543221 1122222344444433 24556666665554444
No 498
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.96 E-value=0.004 Score=54.78 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=18.9
Q ss_pred eeEecCCCCchHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~ 265 (482)
+.++|+||+||||+++.+++
T Consensus 2 i~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999998
No 499
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.95 E-value=0.002 Score=59.35 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.6
Q ss_pred eeEecCCCCchHHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~ 267 (482)
+++.|+||+|||++.+.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999864
No 500
>PRK14531 adenylate kinase; Provisional
Probab=96.95 E-value=0.00064 Score=60.09 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=23.2
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..++++||||+||||+++.||+.++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~ 28 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGL 28 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36899999999999999999998754
Done!