Query 011578
Match_columns 482
No_of_seqs 514 out of 3798
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 11:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011578.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011578hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1.4E-38 4.8E-43 307.9 16.0 236 202-479 144-391 (405)
2 4b4t_I 26S protease regulatory 100.0 1.1E-37 3.7E-42 302.0 14.7 237 202-480 178-426 (437)
3 4b4t_H 26S protease regulatory 100.0 9.1E-37 3.1E-41 298.5 14.8 235 203-479 206-452 (467)
4 4b4t_L 26S protease subunit RP 100.0 1.1E-36 3.8E-41 299.7 15.3 237 202-480 177-425 (437)
5 4b4t_M 26S protease regulatory 100.0 4.8E-37 1.6E-41 302.0 11.2 237 202-480 177-425 (434)
6 4b4t_K 26S protease regulatory 100.0 1.3E-35 4.4E-40 291.8 13.7 235 202-478 168-415 (428)
7 4gpm_A Engineered protein OR26 100.0 1.1E-33 3.7E-38 246.8 15.0 159 15-184 6-164 (169)
8 3cf2_A TER ATPase, transitiona 100.0 9.3E-35 3.2E-39 305.4 0.7 245 203-480 474-746 (806)
9 3cf2_A TER ATPase, transitiona 100.0 3.4E-33 1.2E-37 293.5 8.7 246 203-481 201-463 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.8E-30 6E-35 250.2 17.9 246 203-480 9-302 (322)
11 3twr_A Tankyrase-2; ankyrin re 100.0 8.6E-31 2.9E-35 228.0 14.0 161 9-180 4-164 (165)
12 3syl_A Protein CBBX; photosynt 100.0 6.6E-30 2.3E-34 246.0 21.3 262 198-473 22-290 (309)
13 3v30_A DNA-binding protein rfx 100.0 5.5E-31 1.9E-35 230.8 12.0 164 13-186 2-165 (172)
14 3eie_A Vacuolar protein sortin 100.0 2.8E-30 9.5E-35 249.5 14.8 245 203-480 15-301 (322)
15 3v31_A Ankyrin repeat family A 100.0 3.1E-30 1.1E-34 224.9 13.1 160 12-182 2-161 (167)
16 2qp9_X Vacuolar protein sortin 100.0 1.1E-29 3.7E-34 248.0 17.6 245 203-480 48-334 (355)
17 3f6q_A Integrin-linked protein 100.0 3.3E-30 1.1E-34 227.5 12.6 164 11-184 3-166 (179)
18 4b93_B Ankyrin repeat domain-c 100.0 1.7E-30 5.7E-35 244.7 11.2 156 8-176 81-236 (269)
19 2rfm_A Putative ankyrin repeat 100.0 3.2E-30 1.1E-34 230.2 12.0 161 8-179 30-190 (192)
20 2y1l_E Darpin-8.4; hydrolase-i 100.0 8.1E-30 2.8E-34 222.8 14.3 161 8-179 9-169 (169)
21 1ihb_A P18-INK4C(INK6), cyclin 100.0 6E-30 2.1E-34 221.8 12.3 159 11-181 3-162 (162)
22 2rfa_A Transient receptor pote 100.0 4E-29 1.4E-33 230.0 14.1 161 12-182 2-184 (232)
23 1ikn_D Protein (I-kappa-B-alph 100.0 3.9E-29 1.3E-33 230.8 14.0 170 7-183 39-211 (236)
24 1oy3_D Transcription factor in 100.0 2.4E-29 8.1E-34 238.3 12.5 175 7-188 39-257 (282)
25 1awc_B Protein (GA binding pro 100.0 6E-29 2.1E-33 213.5 13.5 151 13-175 2-152 (153)
26 1bd8_A P19INK4D CDK4/6 inhibit 100.0 5.2E-29 1.8E-33 214.5 13.0 154 13-178 2-155 (156)
27 2x8a_A Nuclear valosin-contain 100.0 2.7E-29 9.1E-34 236.0 11.6 252 201-480 5-267 (274)
28 3hra_A Ankyrin repeat family p 100.0 7.1E-29 2.4E-33 223.0 13.5 168 10-186 2-175 (201)
29 2f8y_A Notch homolog 1, transl 100.0 1.1E-28 3.7E-33 225.6 14.9 167 9-185 21-187 (223)
30 3cf0_A Transitional endoplasmi 100.0 1.2E-29 4.2E-34 242.4 8.9 244 204-480 13-284 (301)
31 2zan_A Vacuolar protein sortin 100.0 9.3E-29 3.2E-33 248.4 15.1 246 203-480 131-424 (444)
32 1yyh_A HN1;, notch 1, ankyrin 100.0 7.6E-29 2.6E-33 231.4 13.1 168 9-186 53-220 (253)
33 1yyh_A HN1;, notch 1, ankyrin 100.0 2.3E-29 7.8E-34 235.0 9.5 164 8-181 85-248 (253)
34 2rfa_A Transient receptor pote 100.0 1.8E-28 6E-33 225.7 15.3 169 7-185 31-226 (232)
35 3aji_A 26S proteasome non-ATPa 100.0 1.7E-28 5.6E-33 225.6 14.3 169 7-186 34-202 (231)
36 2etb_A Transient receptor pote 100.0 2.4E-29 8.4E-34 235.1 8.7 169 9-186 39-251 (256)
37 4gpm_A Engineered protein OR26 100.0 1.9E-28 6.5E-33 213.5 13.6 138 3-150 26-164 (169)
38 3aji_A 26S proteasome non-ATPa 100.0 1.9E-28 6.6E-33 225.2 14.4 165 11-185 4-168 (231)
39 2f8y_A Notch homolog 1, transl 100.0 1.4E-28 4.8E-33 224.8 13.4 164 8-181 53-216 (223)
40 3hra_A Ankyrin repeat family p 100.0 1.2E-28 4.2E-33 221.4 12.7 163 7-179 33-201 (201)
41 3t8k_A Uncharacterized protein 100.0 8.7E-29 3E-33 219.3 10.7 162 13-182 6-180 (186)
42 1k1a_A B-cell lymphoma 3-encod 100.0 1.9E-28 6.6E-33 226.5 13.2 171 9-186 42-213 (241)
43 2dzn_A Probable 26S proteasome 100.0 2.2E-28 7.5E-33 224.2 12.9 170 9-186 32-205 (228)
44 4b93_B Ankyrin repeat domain-c 100.0 2.8E-29 9.6E-34 236.3 6.8 167 9-186 48-215 (269)
45 4hbd_A KN motif and ankyrin re 100.0 1.8E-28 6.2E-33 231.9 11.7 162 8-179 106-273 (276)
46 1oy3_D Transcription factor in 100.0 1E-28 3.5E-33 233.9 9.8 169 8-186 4-222 (282)
47 2xai_A ASB-9, ankyrin repeat a 100.0 3E-28 1E-32 228.5 12.8 160 12-183 2-161 (261)
48 3jxi_A Vanilloid receptor-rela 100.0 1E-28 3.5E-33 231.4 8.6 167 10-186 43-255 (260)
49 2pnn_A Transient receptor pote 99.9 2.9E-28 1E-32 230.1 10.9 169 8-186 49-264 (273)
50 2etb_A Transient receptor pote 99.9 2.1E-28 7.1E-33 228.8 9.6 161 13-182 2-207 (256)
51 1s70_B 130 kDa myosin-binding 99.9 2.7E-28 9.2E-33 233.3 10.6 167 10-187 37-263 (299)
52 3b7b_A Euchromatic histone-lys 99.9 2.1E-27 7.1E-32 219.2 15.9 168 8-185 39-206 (237)
53 2xai_A ASB-9, ankyrin repeat a 99.9 4.2E-28 1.4E-32 227.5 11.3 168 7-187 30-197 (261)
54 3b7b_A Euchromatic histone-lys 99.9 9.8E-28 3.3E-32 221.4 13.0 167 8-185 6-173 (237)
55 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.5E-28 1.2E-32 224.9 10.0 165 10-185 2-168 (239)
56 3d8b_A Fidgetin-like protein 1 99.9 5.6E-27 1.9E-31 229.3 18.6 245 203-480 81-337 (357)
57 3hu3_A Transitional endoplasmi 99.9 1E-27 3.4E-32 242.1 13.1 245 204-481 202-463 (489)
58 3d9h_A CDNA FLJ77766, highly s 99.9 1.3E-27 4.3E-32 227.2 13.1 164 8-183 54-217 (285)
59 1k1a_A B-cell lymphoma 3-encod 99.9 8.8E-28 3E-32 222.1 11.7 168 8-185 4-179 (241)
60 2dzn_A Probable 26S proteasome 99.9 2.1E-27 7.1E-32 217.7 14.1 163 13-183 2-168 (228)
61 2ce7_A Cell division protein F 99.9 7.3E-27 2.5E-31 233.6 19.0 233 204-479 14-258 (476)
62 3ljn_A Hypothetical protein; a 99.9 2.4E-27 8.1E-32 233.5 15.2 129 48-185 138-273 (364)
63 1ikn_D Protein (I-kappa-B-alph 99.9 1.4E-28 4.8E-33 227.1 5.7 169 8-186 3-181 (236)
64 3d9h_A CDNA FLJ77766, highly s 99.9 5.6E-27 1.9E-31 222.8 15.9 166 8-186 87-252 (285)
65 2pnn_A Transient receptor pote 99.9 8.8E-28 3E-32 226.8 10.0 175 5-184 5-221 (273)
66 3kea_A K1L; tropism, ANK repea 99.9 3.4E-28 1.2E-32 231.1 7.2 166 7-186 25-191 (285)
67 1bi7_B P16INK4A, MTS1, multipl 99.9 9.7E-28 3.3E-32 206.7 8.7 142 8-160 7-149 (156)
68 3utm_A Tankyrase-1; tankyrase, 99.9 5E-27 1.7E-31 229.4 14.3 100 8-113 53-152 (351)
69 3kea_A K1L; tropism, ANK repea 99.9 1E-27 3.5E-32 227.8 8.9 171 3-186 53-225 (285)
70 3vfd_A Spastin; ATPase, microt 99.9 1.2E-26 4.3E-31 229.9 16.8 244 204-480 113-368 (389)
71 1s70_B 130 kDa myosin-binding 99.9 1.2E-26 4E-31 221.9 15.5 158 8-176 68-285 (299)
72 1lv7_A FTSH; alpha/beta domain 99.9 5.1E-26 1.7E-30 212.7 19.4 232 203-478 9-253 (257)
73 3b9p_A CG5977-PA, isoform A; A 99.9 5.7E-27 1.9E-31 224.1 12.9 245 203-480 18-275 (297)
74 3ljn_A Hypothetical protein; a 99.9 1.1E-27 3.9E-32 235.7 8.1 170 10-186 17-241 (364)
75 2qz4_A Paraplegin; AAA+, SPG7, 99.9 5.3E-27 1.8E-31 220.1 12.1 234 204-479 4-251 (262)
76 3h4m_A Proteasome-activating n 99.9 1.7E-26 5.9E-31 219.4 15.4 234 204-479 15-260 (285)
77 1sw6_A Regulatory protein SWI6 99.9 2.2E-27 7.7E-32 230.0 9.3 153 3-164 119-325 (327)
78 3jxi_A Vanilloid receptor-rela 99.9 1.6E-27 5.4E-32 223.3 7.4 170 10-183 2-212 (260)
79 2vge_A RELA-associated inhibit 99.9 7.3E-27 2.5E-31 214.4 11.1 148 8-165 16-166 (229)
80 3lvq_E ARF-GAP with SH3 domain 99.9 1.7E-26 5.9E-31 236.5 14.7 130 12-151 131-269 (497)
81 1d9s_A Cyclin-dependent kinase 99.9 3E-27 1E-31 198.6 7.2 131 39-180 4-135 (136)
82 1n11_A Ankyrin; clathrin, BAND 99.9 2.3E-26 7.9E-31 232.1 13.9 166 9-185 208-373 (437)
83 1wdy_A 2-5A-dependent ribonucl 99.9 2.6E-26 9E-31 217.3 13.3 171 8-185 67-249 (285)
84 1d9s_A Cyclin-dependent kinase 99.9 1E-26 3.6E-31 195.3 9.1 130 7-147 6-136 (136)
85 4g8k_A 2-5A-dependent ribonucl 99.9 2.4E-26 8.1E-31 223.8 12.5 162 9-185 164-330 (337)
86 2fo1_E LIN-12 protein; beta-ba 99.9 1.9E-26 6.6E-31 227.7 10.9 175 3-185 155-342 (373)
87 2fo1_E LIN-12 protein; beta-ba 99.9 4.4E-26 1.5E-30 225.1 13.0 165 7-181 193-371 (373)
88 1n11_A Ankyrin; clathrin, BAND 99.9 6.2E-26 2.1E-30 228.9 14.4 160 8-178 240-399 (437)
89 3v30_A DNA-binding protein rfx 99.9 3.7E-26 1.3E-30 200.0 10.0 142 7-158 30-171 (172)
90 2dhr_A FTSH; AAA+ protein, hex 99.9 1.7E-25 5.8E-30 225.0 16.0 233 203-479 28-273 (499)
91 3utm_A Tankyrase-1; tankyrase, 99.9 5.6E-26 1.9E-30 221.9 11.2 137 11-156 22-158 (351)
92 3eu9_A Huntingtin-interacting 99.9 1.1E-25 3.7E-30 207.5 12.4 168 8-185 4-172 (240)
93 1wdy_A 2-5A-dependent ribonucl 99.9 1.5E-25 5.1E-30 212.1 13.3 166 10-185 36-215 (285)
94 3eu9_A Huntingtin-interacting 99.9 1.6E-25 5.4E-30 206.5 12.8 169 8-185 37-206 (240)
95 4g8k_A 2-5A-dependent ribonucl 99.9 1.6E-25 5.4E-30 218.0 13.1 172 8-188 120-305 (337)
96 1ycs_B 53BP2, P53BP2; ankyrin 99.9 6.5E-26 2.2E-30 209.6 9.3 155 1-165 25-191 (239)
97 2jab_A H10-2-G3; HER2, darpin, 99.9 1.8E-25 6.1E-30 187.7 10.7 125 11-145 12-136 (136)
98 3f6q_A Integrin-linked protein 99.9 7.9E-25 2.7E-29 192.9 14.9 139 7-155 33-171 (179)
99 1n0r_A 4ANK, 4 ankyrin repeats 99.9 4.4E-25 1.5E-29 182.2 11.3 126 12-147 1-126 (126)
100 3c5r_A BARD-1, BRCA1-associate 99.9 3.9E-25 1.3E-29 185.9 10.7 128 6-143 3-130 (137)
101 3c5r_A BARD-1, BRCA1-associate 99.9 1.5E-25 5E-30 188.5 7.6 128 42-179 5-132 (137)
102 2jab_A H10-2-G3; HER2, darpin, 99.9 2.5E-25 8.5E-30 186.8 8.6 124 47-179 13-136 (136)
103 3twr_A Tankyrase-2; ankyrin re 99.9 2.7E-24 9.4E-29 186.7 15.1 129 7-146 36-164 (165)
104 1awc_B Protein (GA binding pro 99.9 1.4E-24 4.7E-29 186.1 11.5 129 3-141 24-152 (153)
105 1n0r_A 4ANK, 4 ankyrin repeats 99.9 7.3E-25 2.5E-29 180.9 9.4 126 47-181 1-126 (126)
106 1bi7_B P16INK4A, MTS1, multipl 99.9 1.3E-25 4.4E-30 193.3 4.9 136 43-189 8-144 (156)
107 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.3E-24 4.5E-29 188.0 10.8 134 3-147 27-162 (162)
108 2vge_A RELA-associated inhibit 99.9 8.6E-25 2.9E-29 200.6 10.0 149 29-186 1-153 (229)
109 2y1l_E Darpin-8.4; hydrolase-i 99.9 5.7E-24 2E-28 185.5 13.6 128 8-145 42-169 (169)
110 1ixz_A ATP-dependent metallopr 99.9 9.4E-24 3.2E-28 196.9 15.4 229 203-474 13-253 (254)
111 2r62_A Cell division protease 99.9 1.5E-26 5E-31 217.8 -3.9 234 204-480 9-256 (268)
112 3aaa_C Myotrophin, protein V-1 99.9 3.3E-24 1.1E-28 176.6 10.4 107 48-162 7-113 (123)
113 4hbd_A KN motif and ankyrin re 99.9 1.7E-25 5.7E-30 211.5 2.1 164 13-186 76-247 (276)
114 2rfm_A Putative ankyrin repeat 99.9 1.1E-24 3.8E-29 194.2 6.7 137 39-185 27-163 (192)
115 3ehr_A Osteoclast-stimulating 99.9 2.9E-24 1E-28 196.1 9.4 137 11-156 71-207 (222)
116 3aaa_C Myotrophin, protein V-1 99.9 8.4E-24 2.9E-28 174.2 11.0 111 10-126 4-114 (123)
117 2b0o_E UPLC1; arfgap, structur 99.9 3.3E-24 1.1E-28 204.8 9.4 139 12-166 150-297 (301)
118 1sw6_A Regulatory protein SWI6 99.9 3.1E-25 1.1E-29 215.0 1.4 165 15-186 99-313 (327)
119 3v31_A Ankyrin repeat family A 99.9 7.2E-24 2.5E-28 184.4 9.9 133 7-149 30-162 (167)
120 1ypw_A Transitional endoplasmi 99.9 1.3E-26 4.4E-31 248.3 -9.5 243 204-479 475-745 (806)
121 3hws_A ATP-dependent CLP prote 99.9 1.2E-22 4.1E-27 199.5 17.8 255 200-472 8-344 (363)
122 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.2E-23 1.4E-27 177.3 12.1 126 7-144 30-155 (156)
123 3deo_A Signal recognition part 99.9 7.1E-24 2.4E-28 187.5 6.8 138 11-177 42-180 (183)
124 1iy2_A ATP-dependent metallopr 99.9 6.7E-23 2.3E-27 193.7 13.9 229 203-474 37-277 (278)
125 1ofh_A ATP-dependent HSL prote 99.9 4.4E-22 1.5E-26 191.2 19.8 259 200-477 8-299 (310)
126 3ui2_A Signal recognition part 99.9 1.2E-23 4.1E-28 195.0 8.2 140 11-179 43-183 (244)
127 3t8k_A Uncharacterized protein 99.9 5.5E-24 1.9E-28 188.4 5.3 132 11-152 36-184 (186)
128 1g41_A Heat shock protein HSLU 99.9 1.3E-21 4.3E-26 192.8 22.5 258 200-476 8-432 (444)
129 3ehr_A Osteoclast-stimulating 99.9 1.2E-23 4.2E-28 192.0 6.1 132 48-188 73-205 (222)
130 3deo_A Signal recognition part 99.9 2.8E-23 9.5E-28 183.7 5.6 108 48-164 44-152 (183)
131 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.2E-22 4E-27 158.4 8.2 92 48-147 2-93 (93)
132 2aja_A Ankyrin repeat family p 99.9 1.5E-23 5.1E-28 205.6 2.3 161 11-186 90-255 (376)
133 3t15_A Ribulose bisphosphate c 99.9 5.5E-22 1.9E-26 188.3 12.9 160 239-425 32-217 (293)
134 3pvs_A Replication-associated 99.9 6.8E-22 2.3E-26 197.7 13.5 209 203-475 23-242 (447)
135 2l6b_A NR1C; ankyrin, consensu 99.9 2E-22 6.8E-27 163.7 7.7 108 43-159 5-112 (115)
136 1um8_A ATP-dependent CLP prote 99.9 4E-21 1.4E-25 189.6 18.4 257 198-473 12-361 (376)
137 3pfi_A Holliday junction ATP-d 99.9 3E-21 1E-25 187.9 17.1 206 204-476 27-253 (338)
138 3jue_A Arfgap with coiled-coil 99.9 5.1E-22 1.7E-26 194.0 10.2 139 13-160 199-342 (368)
139 1dcq_A PYK2-associated protein 99.9 1.1E-21 3.6E-26 185.3 11.6 124 15-147 132-263 (278)
140 3ui2_A Signal recognition part 99.9 5E-22 1.7E-26 184.0 8.3 140 11-164 13-153 (244)
141 3m6a_A ATP-dependent protease 99.9 1.5E-21 5.1E-26 200.5 11.3 231 205-475 80-339 (543)
142 1ypw_A Transitional endoplasmi 99.8 2.6E-21 8.9E-26 207.3 13.1 245 203-480 201-462 (806)
143 1dcq_A PYK2-associated protein 99.8 5.3E-21 1.8E-25 180.4 13.7 167 9-181 62-263 (278)
144 3uk6_A RUVB-like 2; hexameric 99.8 1.5E-20 5E-25 185.2 16.9 215 205-476 43-329 (368)
145 4fcw_A Chaperone protein CLPB; 99.8 1.3E-20 4.3E-25 181.2 15.9 218 206-451 17-281 (311)
146 2c9o_A RUVB-like 1; hexameric 99.8 1.6E-20 5.3E-25 189.6 16.7 103 204-323 35-143 (456)
147 3lvq_E ARF-GAP with SH3 domain 99.8 5.8E-21 2E-25 195.4 10.1 130 48-186 132-270 (497)
148 2b0o_E UPLC1; arfgap, structur 99.8 9.9E-21 3.4E-25 180.7 10.9 125 48-181 151-284 (301)
149 1n0q_A 3ANK, 3 ankyrin repeats 99.8 2.8E-20 9.5E-25 144.8 11.3 93 12-110 1-93 (93)
150 3jue_A Arfgap with coiled-coil 99.8 8.6E-21 2.9E-25 185.3 10.1 124 48-180 199-325 (368)
151 2l6b_A NR1C; ankyrin, consensu 99.8 1.4E-20 4.9E-25 152.6 9.0 109 8-122 4-112 (115)
152 1hqc_A RUVB; extended AAA-ATPa 99.8 1.5E-19 5.1E-24 174.7 16.1 186 204-447 10-217 (324)
153 3pxi_A Negative regulator of g 99.8 1.4E-19 5E-24 194.1 17.5 217 206-451 491-727 (758)
154 1r6b_X CLPA protein; AAA+, N-t 99.8 1.9E-19 6.6E-24 193.5 15.9 210 207-449 459-716 (758)
155 2aja_A Ankyrin repeat family p 99.8 8.8E-21 3E-25 185.9 4.5 153 14-181 66-224 (376)
156 2bjv_A PSP operon transcriptio 99.8 1.2E-19 4.2E-24 170.1 11.9 208 203-448 3-240 (265)
157 1qvr_A CLPB protein; coiled co 99.8 1.2E-18 4E-23 189.1 19.8 219 205-451 557-822 (854)
158 1ojl_A Transcriptional regulat 99.8 1E-19 3.4E-24 173.5 9.2 203 207-448 3-235 (304)
159 3te6_A Regulatory protein SIR3 99.8 9.9E-18 3.4E-22 158.7 17.4 242 208-477 22-315 (318)
160 1d2n_A N-ethylmaleimide-sensit 99.8 8.1E-18 2.8E-22 158.2 16.6 189 241-477 62-264 (272)
161 2chg_A Replication factor C sm 99.8 2E-17 6.9E-22 150.4 17.7 203 204-475 15-224 (226)
162 1sxj_A Activator 1 95 kDa subu 99.8 5.3E-18 1.8E-22 173.7 14.7 201 204-446 37-257 (516)
163 3pxg_A Negative regulator of g 99.8 1.3E-17 4.5E-22 168.4 17.1 202 204-448 178-385 (468)
164 2zgd_A 3 repeat synthetic anky 99.8 7.4E-19 2.5E-23 141.3 6.3 91 42-141 19-109 (110)
165 1g8p_A Magnesium-chelatase 38 99.7 2.9E-18 1E-22 167.5 11.4 233 203-478 21-323 (350)
166 1r6b_X CLPA protein; AAA+, N-t 99.7 2.9E-17 1E-21 176.5 20.0 243 203-477 183-433 (758)
167 2v1u_A Cell division control p 99.7 7.3E-18 2.5E-22 166.9 12.3 231 206-478 19-277 (387)
168 3u61_B DNA polymerase accessor 99.7 2.6E-17 8.9E-22 158.9 13.8 186 203-445 23-220 (324)
169 2r44_A Uncharacterized protein 99.7 1E-17 3.4E-22 162.3 10.9 231 203-478 24-298 (331)
170 2qby_B CDC6 homolog 3, cell di 99.7 4.2E-17 1.4E-21 161.4 15.6 225 206-478 20-271 (384)
171 1njg_A DNA polymerase III subu 99.7 3.4E-16 1.2E-20 144.2 20.3 202 204-474 21-248 (250)
172 3bos_A Putative DNA replicatio 99.7 3.2E-17 1.1E-21 151.1 12.5 186 242-475 51-241 (242)
173 1jbk_A CLPB protein; beta barr 99.7 6E-18 2E-22 150.2 6.7 167 203-389 19-194 (195)
174 1qvr_A CLPB protein; coiled co 99.7 9E-17 3.1E-21 174.3 16.9 217 203-448 167-392 (854)
175 2chq_A Replication factor C sm 99.7 1.9E-16 6.4E-21 152.5 17.4 188 204-446 15-209 (319)
176 3pxi_A Negative regulator of g 99.7 9.9E-17 3.4E-21 172.1 16.2 203 204-449 178-386 (758)
177 1in4_A RUVB, holliday junction 99.7 4.7E-16 1.6E-20 150.4 18.6 207 204-477 23-250 (334)
178 1sxj_D Activator 1 41 kDa subu 99.7 1.9E-16 6.4E-21 154.8 15.8 190 203-447 34-241 (353)
179 2zgd_A 3 repeat synthetic anky 99.7 6.7E-17 2.3E-21 129.8 10.1 93 6-104 17-109 (110)
180 1l8q_A Chromosomal replication 99.7 1.9E-16 6.5E-21 152.8 14.1 200 242-477 36-240 (324)
181 1ny5_A Transcriptional regulat 99.7 3.4E-16 1.2E-20 154.1 15.0 218 206-474 137-384 (387)
182 2z4s_A Chromosomal replication 99.7 3.8E-17 1.3E-21 163.6 7.9 198 243-477 130-332 (440)
183 1iqp_A RFCS; clamp loader, ext 99.7 5.8E-16 2E-20 149.6 15.0 188 204-446 23-217 (327)
184 1sxj_B Activator 1 37 kDa subu 99.7 2.3E-15 7.9E-20 145.0 17.1 184 204-446 19-214 (323)
185 2qby_A CDC6 homolog 1, cell di 99.6 8.1E-16 2.8E-20 152.0 13.7 228 206-478 20-273 (386)
186 1jr3_A DNA polymerase III subu 99.6 4.9E-15 1.7E-19 145.8 19.1 188 204-447 14-227 (373)
187 3f9v_A Minichromosome maintena 99.6 2.1E-16 7.1E-21 163.6 8.5 245 206-479 295-589 (595)
188 3n70_A Transport activator; si 99.6 3.9E-16 1.3E-20 131.9 8.6 138 207-380 2-144 (145)
189 3dzd_A Transcriptional regulat 99.6 1.5E-16 5.1E-21 155.4 6.4 202 207-448 130-361 (368)
190 1sxj_E Activator 1 40 kDa subu 99.6 1.9E-15 6.4E-20 147.7 14.3 190 204-448 12-244 (354)
191 2p65_A Hypothetical protein PF 99.6 1.1E-16 3.8E-21 141.2 3.8 159 204-381 20-187 (187)
192 1fnn_A CDC6P, cell division co 99.6 1.5E-14 5E-19 143.2 19.1 226 206-477 17-274 (389)
193 3k1j_A LON protease, ATP-depen 99.6 5.2E-15 1.8E-19 154.3 16.2 148 300-476 195-374 (604)
194 1sxj_C Activator 1 40 kDa subu 99.6 1.1E-14 3.9E-19 141.3 14.5 182 203-444 22-215 (340)
195 3co5_A Putative two-component 99.6 8E-17 2.7E-21 135.7 -0.9 133 207-380 5-142 (143)
196 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 3.6E-15 1.2E-19 150.2 5.4 207 206-449 22-267 (500)
197 1a5t_A Delta prime, HOLB; zinc 99.5 1.7E-12 5.9E-17 125.3 17.7 129 243-392 24-179 (334)
198 2gno_A DNA polymerase III, gam 99.4 4.1E-13 1.4E-17 127.3 9.8 125 243-393 18-152 (305)
199 1w5s_A Origin recognition comp 99.4 6.1E-12 2.1E-16 125.3 16.0 218 206-448 22-273 (412)
200 3f8t_A Predicted ATPase involv 99.3 5.4E-12 1.8E-16 123.3 11.0 238 197-478 204-484 (506)
201 3cmw_A Protein RECA, recombina 99.0 2E-09 6.7E-14 121.3 11.9 147 199-352 1013-1216(1706)
202 4akg_A Glutathione S-transfera 98.9 1E-09 3.5E-14 128.8 7.6 138 244-396 1268-1434(2695)
203 2qen_A Walker-type ATPase; unk 98.9 6.2E-08 2.1E-12 93.8 17.3 159 206-395 12-218 (350)
204 1jr3_D DNA polymerase III, del 98.8 1.2E-08 4.3E-13 98.7 11.2 160 242-446 17-190 (343)
205 3ec2_A DNA replication protein 98.8 5.7E-09 1.9E-13 91.1 5.9 102 242-353 37-142 (180)
206 2w58_A DNAI, primosome compone 98.8 6.4E-09 2.2E-13 92.6 6.0 72 243-320 54-129 (202)
207 2kjq_A DNAA-related protein; s 98.8 3.2E-09 1.1E-13 89.4 3.5 63 242-320 35-97 (149)
208 1tue_A Replication protein E1; 98.7 3.5E-08 1.2E-12 85.9 8.1 25 244-268 59-83 (212)
209 2fna_A Conserved hypothetical 98.7 3.6E-07 1.2E-11 88.5 15.8 138 244-394 31-223 (357)
210 2r2a_A Uncharacterized protein 98.7 5.4E-08 1.8E-12 85.8 8.3 128 243-381 5-154 (199)
211 2qgz_A Helicase loader, putati 98.6 4.9E-08 1.7E-12 92.6 6.1 73 243-319 152-227 (308)
212 2vhj_A Ntpase P4, P4; non- hyd 98.5 2.4E-07 8.1E-12 86.8 7.4 103 244-353 124-234 (331)
213 1u0j_A DNA replication protein 98.4 3.1E-07 1.1E-11 83.9 7.1 25 243-267 104-128 (267)
214 1ye8_A Protein THEP1, hypothet 98.3 2.2E-06 7.5E-11 74.2 9.8 24 245-268 2-25 (178)
215 2krk_A 26S protease regulatory 98.3 4.1E-07 1.4E-11 68.1 4.2 78 376-480 7-84 (86)
216 4akg_A Glutathione S-transfera 98.3 2.3E-06 8E-11 101.0 12.1 129 244-391 646-791 (2695)
217 3kw6_A 26S protease regulatory 98.3 9.3E-07 3.2E-11 65.1 5.4 76 378-480 1-76 (78)
218 3vkg_A Dynein heavy chain, cyt 98.2 4.8E-06 1.6E-10 99.0 12.8 139 243-396 1304-1472(3245)
219 3cmu_A Protein RECA, recombina 98.1 7.3E-06 2.5E-10 93.8 10.3 109 240-352 1424-1561(2050)
220 2orw_A Thymidine kinase; TMTK, 98.1 2.5E-06 8.4E-11 74.3 4.8 28 244-271 4-31 (184)
221 3vlf_B 26S protease regulatory 97.9 9E-06 3.1E-10 61.2 3.6 72 381-479 2-73 (88)
222 3kl4_A SRP54, signal recogniti 97.9 0.00013 4.5E-09 71.7 12.8 216 242-481 96-344 (433)
223 3aji_B S6C, proteasome (prosom 97.8 9.4E-06 3.2E-10 60.4 3.3 74 380-480 1-74 (83)
224 3dm5_A SRP54, signal recogniti 97.8 0.00067 2.3E-08 66.7 17.3 215 242-481 99-344 (443)
225 3vkg_A Dynein heavy chain, cyt 97.8 3.3E-05 1.1E-09 92.0 8.7 120 245-390 606-750 (3245)
226 3upu_A ATP-dependent DNA helic 97.8 0.00015 5E-09 72.8 11.9 93 244-350 46-162 (459)
227 3e1s_A Exodeoxyribonuclease V, 97.8 5.5E-05 1.9E-09 77.8 8.6 93 243-350 204-313 (574)
228 2ze6_A Isopentenyl transferase 97.7 0.00048 1.6E-08 63.0 13.6 133 245-391 3-137 (253)
229 3crm_A TRNA delta(2)-isopenten 97.7 6.2E-05 2.1E-09 70.9 6.7 98 244-354 6-104 (323)
230 2w0m_A SSO2452; RECA, SSPF, un 97.6 0.00022 7.5E-09 64.2 10.0 27 242-268 22-48 (235)
231 2b8t_A Thymidine kinase; deoxy 97.5 0.00021 7.4E-09 63.7 8.3 28 244-271 13-40 (223)
232 2i3b_A HCR-ntpase, human cance 97.5 0.00016 5.4E-09 63.0 6.7 27 245-271 3-29 (189)
233 2ga8_A Hypothetical 39.9 kDa p 97.5 9.1E-05 3.1E-09 70.4 5.0 28 242-269 23-50 (359)
234 1xp8_A RECA protein, recombina 97.4 0.00058 2E-08 65.8 10.5 75 242-320 73-166 (366)
235 1svm_A Large T antigen; AAA+ f 97.4 0.00013 4.5E-09 70.6 5.9 98 240-355 166-265 (377)
236 2zr9_A Protein RECA, recombina 97.4 0.00029 9.9E-09 67.7 7.1 75 242-320 60-153 (349)
237 1qhx_A CPT, protein (chloramph 97.4 6.1E-05 2.1E-09 64.9 2.2 35 244-285 4-38 (178)
238 2dr3_A UPF0273 protein PH0284; 97.3 0.00099 3.4E-08 60.4 10.3 27 242-268 22-48 (247)
239 2fz4_A DNA repair protein RAD2 97.3 0.00024 8.3E-09 64.4 5.9 23 245-267 110-132 (237)
240 2cvh_A DNA repair and recombin 97.3 0.00033 1.1E-08 62.4 6.7 24 242-265 19-42 (220)
241 2r8r_A Sensor protein; KDPD, P 97.3 0.0021 7.2E-08 57.0 11.6 74 243-319 6-97 (228)
242 1u94_A RECA protein, recombina 97.3 0.00043 1.5E-08 66.6 7.6 75 242-320 62-155 (356)
243 3vaa_A Shikimate kinase, SK; s 97.3 0.00012 4E-09 64.5 3.2 29 241-269 23-51 (199)
244 3hr8_A Protein RECA; alpha and 97.3 0.00071 2.4E-08 64.8 8.6 74 243-320 61-153 (356)
245 3trf_A Shikimate kinase, SK; a 97.2 0.00012 4E-09 63.5 2.8 27 243-269 5-31 (185)
246 3foz_A TRNA delta(2)-isopenten 97.2 0.00062 2.1E-08 63.4 7.6 105 243-360 10-115 (316)
247 3sr0_A Adenylate kinase; phosp 97.2 0.00018 6.3E-09 63.5 3.6 34 245-287 2-35 (206)
248 1n0w_A DNA repair protein RAD5 97.2 0.00072 2.5E-08 61.2 7.6 25 242-266 23-47 (243)
249 2ehv_A Hypothetical protein PH 97.2 0.0006 2.1E-08 62.0 6.9 24 242-265 29-52 (251)
250 1w36_D RECD, exodeoxyribonucle 97.2 0.0014 4.9E-08 67.8 10.5 27 243-269 164-190 (608)
251 4a74_A DNA repair and recombin 97.1 0.00061 2.1E-08 61.1 6.6 26 242-267 24-49 (231)
252 3eph_A TRNA isopentenyltransfe 97.1 0.00034 1.2E-08 67.6 4.8 101 244-357 3-104 (409)
253 1y63_A LMAJ004144AAA protein; 97.1 0.00019 6.6E-09 62.2 2.6 26 241-266 8-33 (184)
254 1z6t_A APAF-1, apoptotic prote 97.1 0.0019 6.6E-08 66.9 10.4 47 206-266 124-170 (591)
255 1via_A Shikimate kinase; struc 97.1 0.00029 1E-08 60.4 3.4 25 245-269 6-30 (175)
256 2iyv_A Shikimate kinase, SK; t 97.1 0.00027 9.3E-09 61.2 3.1 26 244-269 3-28 (184)
257 3umf_A Adenylate kinase; rossm 97.1 0.00064 2.2E-08 60.4 5.6 38 242-288 28-65 (217)
258 3kb2_A SPBC2 prophage-derived 97.1 0.00026 9E-09 60.4 3.0 25 245-269 3-27 (173)
259 1gvn_B Zeta; postsegregational 97.0 0.00057 1.9E-08 63.8 5.3 27 241-267 31-57 (287)
260 2rhm_A Putative kinase; P-loop 97.0 0.00036 1.2E-08 60.7 3.5 28 242-269 4-31 (193)
261 3iij_A Coilin-interacting nucl 97.0 0.00029 1E-08 60.7 2.9 28 242-269 10-37 (180)
262 1zuh_A Shikimate kinase; alpha 97.0 0.0003 1E-08 59.9 2.9 28 242-269 6-33 (168)
263 2cdn_A Adenylate kinase; phosp 97.0 0.00038 1.3E-08 61.2 3.6 29 241-269 18-46 (201)
264 1w4r_A Thymidine kinase; type 97.0 0.0011 3.8E-08 57.2 6.3 25 245-269 22-47 (195)
265 2eyu_A Twitching motility prot 97.0 0.0034 1.2E-07 57.6 9.8 28 242-269 24-51 (261)
266 1nlf_A Regulatory protein REPA 97.0 0.0047 1.6E-07 57.3 10.9 27 242-268 29-55 (279)
267 1kag_A SKI, shikimate kinase I 96.9 0.00039 1.3E-08 59.4 3.0 25 244-268 5-29 (173)
268 3cmu_A Protein RECA, recombina 96.9 0.0027 9.1E-08 73.2 10.4 108 242-353 731-867 (2050)
269 1ex7_A Guanylate kinase; subst 96.9 0.0072 2.5E-07 52.1 10.8 23 245-267 3-25 (186)
270 3exa_A TRNA delta(2)-isopenten 96.9 0.0006 2E-08 63.6 4.0 104 244-360 4-108 (322)
271 2z43_A DNA repair and recombin 96.9 0.0015 5E-08 62.2 6.8 26 242-267 106-131 (324)
272 3jvv_A Twitching mobility prot 96.9 0.0055 1.9E-07 58.8 10.8 27 243-269 123-149 (356)
273 2a5y_B CED-4; apoptosis; HET: 96.9 0.0041 1.4E-07 63.7 10.5 44 209-265 131-174 (549)
274 2iut_A DNA translocase FTSK; n 96.9 0.0023 8E-08 64.7 8.4 76 308-390 345-420 (574)
275 1kht_A Adenylate kinase; phosp 96.9 0.00064 2.2E-08 59.0 3.8 26 244-269 4-29 (192)
276 1aky_A Adenylate kinase; ATP:A 96.8 0.00053 1.8E-08 61.3 3.3 28 242-269 3-30 (220)
277 3t61_A Gluconokinase; PSI-biol 96.8 0.00058 2E-08 60.1 3.4 27 243-269 18-44 (202)
278 1nn5_A Similar to deoxythymidy 96.8 0.00085 2.9E-08 59.5 4.4 30 242-271 8-37 (215)
279 3ney_A 55 kDa erythrocyte memb 96.8 0.0011 3.6E-08 57.9 4.8 28 240-267 16-43 (197)
280 1xx6_A Thymidine kinase; NESG, 96.8 0.0029 1E-07 54.9 7.6 72 245-320 10-95 (191)
281 2c95_A Adenylate kinase 1; tra 96.8 0.00048 1.7E-08 60.1 2.7 28 242-269 8-35 (196)
282 1e6c_A Shikimate kinase; phosp 96.8 0.00052 1.8E-08 58.6 2.7 25 245-269 4-28 (173)
283 2pt5_A Shikimate kinase, SK; a 96.8 0.00056 1.9E-08 58.1 2.9 25 245-269 2-26 (168)
284 1nks_A Adenylate kinase; therm 96.8 0.0007 2.4E-08 58.8 3.4 25 245-269 3-27 (194)
285 2vli_A Antibiotic resistance p 96.8 0.00047 1.6E-08 59.5 2.2 27 243-269 5-31 (183)
286 2p5t_B PEZT; postsegregational 96.8 0.0012 4.1E-08 60.3 5.1 28 241-268 30-57 (253)
287 1zak_A Adenylate kinase; ATP:A 96.8 0.00084 2.9E-08 60.0 3.8 28 242-269 4-31 (222)
288 3be4_A Adenylate kinase; malar 96.7 0.00056 1.9E-08 61.0 2.6 27 243-269 5-31 (217)
289 2wwf_A Thymidilate kinase, put 96.7 0.0012 4E-08 58.4 4.7 30 242-271 9-38 (212)
290 3uie_A Adenylyl-sulfate kinase 96.7 0.00096 3.3E-08 58.6 4.1 30 242-271 24-53 (200)
291 1zp6_A Hypothetical protein AT 96.7 0.00039 1.3E-08 60.5 1.4 25 242-266 8-32 (191)
292 3cm0_A Adenylate kinase; ATP-b 96.7 0.00054 1.8E-08 59.3 2.3 26 244-269 5-30 (186)
293 1ly1_A Polynucleotide kinase; 96.7 0.00064 2.2E-08 58.4 2.8 22 244-265 3-24 (181)
294 1ak2_A Adenylate kinase isoenz 96.7 0.00085 2.9E-08 60.5 3.7 28 242-269 15-42 (233)
295 3a8t_A Adenylate isopentenyltr 96.7 0.00086 3E-08 63.3 3.8 104 244-360 41-146 (339)
296 3fb4_A Adenylate kinase; psych 96.7 0.0006 2.1E-08 60.6 2.6 25 245-269 2-26 (216)
297 3tlx_A Adenylate kinase 2; str 96.7 0.00055 1.9E-08 62.2 2.3 27 242-268 28-54 (243)
298 3zvl_A Bifunctional polynucleo 96.7 0.0065 2.2E-07 59.8 10.2 27 242-268 257-283 (416)
299 3lda_A DNA repair protein RAD5 96.7 0.0035 1.2E-07 61.1 8.0 24 242-265 177-200 (400)
300 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0012 4.1E-08 60.6 4.5 29 243-271 4-32 (260)
301 3dl0_A Adenylate kinase; phosp 96.7 0.00053 1.8E-08 61.0 2.0 24 245-268 2-25 (216)
302 2bwj_A Adenylate kinase 5; pho 96.7 0.00067 2.3E-08 59.3 2.7 27 243-269 12-38 (199)
303 1tev_A UMP-CMP kinase; ploop, 96.7 0.00068 2.3E-08 59.0 2.6 26 243-268 3-28 (196)
304 4eun_A Thermoresistant glucoki 96.7 0.0011 3.7E-08 58.2 3.8 26 242-267 28-53 (200)
305 1v5w_A DMC1, meiotic recombina 96.6 0.0034 1.1E-07 60.2 7.4 26 242-267 121-146 (343)
306 1zd8_A GTP:AMP phosphotransfer 96.6 0.00057 1.9E-08 61.4 1.9 27 242-268 6-32 (227)
307 3cmw_A Protein RECA, recombina 96.6 0.0037 1.3E-07 71.1 8.7 77 240-320 729-824 (1706)
308 3lw7_A Adenylate kinase relate 96.6 0.0006 2.1E-08 58.2 1.8 23 245-268 3-25 (179)
309 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.0051 1.8E-07 58.5 8.2 70 243-317 171-251 (330)
310 1g5t_A COB(I)alamin adenosyltr 96.6 0.01 3.5E-07 51.3 9.3 30 243-272 28-57 (196)
311 1knq_A Gluconate kinase; ALFA/ 96.6 0.0013 4.5E-08 56.2 3.6 26 243-268 8-33 (175)
312 1qf9_A UMP/CMP kinase, protein 96.6 0.0011 3.7E-08 57.6 3.2 25 244-268 7-31 (194)
313 2plr_A DTMP kinase, probable t 96.5 0.0012 4.1E-08 58.4 3.3 27 243-269 4-30 (213)
314 1ukz_A Uridylate kinase; trans 96.5 0.0008 2.7E-08 59.2 2.1 27 242-268 14-40 (203)
315 1e4v_A Adenylate kinase; trans 96.5 0.0012 4.1E-08 58.7 3.1 24 245-268 2-25 (214)
316 2qor_A Guanylate kinase; phosp 96.5 0.0013 4.4E-08 57.9 3.1 26 242-267 11-36 (204)
317 2ewv_A Twitching motility prot 96.5 0.006 2.1E-07 59.0 8.0 28 242-269 135-162 (372)
318 2ius_A DNA translocase FTSK; n 96.5 0.003 1E-07 63.4 5.8 77 308-391 299-375 (512)
319 3llm_A ATP-dependent RNA helic 96.4 0.015 5.1E-07 52.3 10.0 22 243-264 76-97 (235)
320 2pez_A Bifunctional 3'-phospho 96.4 0.0018 6.3E-08 55.6 3.7 37 243-283 5-41 (179)
321 1cke_A CK, MSSA, protein (cyti 96.4 0.0017 5.8E-08 58.1 3.3 26 244-269 6-31 (227)
322 2jaq_A Deoxyguanosine kinase; 96.4 0.0018 6.3E-08 56.7 3.5 25 245-269 2-26 (205)
323 3r20_A Cytidylate kinase; stru 96.4 0.0018 6.2E-08 58.1 3.4 28 242-269 8-35 (233)
324 2yvu_A Probable adenylyl-sulfa 96.4 0.0022 7.6E-08 55.4 3.9 29 242-270 12-40 (186)
325 2pbr_A DTMP kinase, thymidylat 96.4 0.0023 7.8E-08 55.6 4.0 25 245-269 2-26 (195)
326 2dzn_B 26S protease regulatory 96.4 0.00023 8E-09 52.5 -2.1 69 383-478 1-69 (82)
327 1kgd_A CASK, peripheral plasma 96.4 0.0022 7.4E-08 55.2 3.8 25 243-267 5-29 (180)
328 3sfz_A APAF-1, apoptotic pepti 96.4 0.022 7.5E-07 64.3 13.0 48 206-267 124-171 (1249)
329 3gmt_A Adenylate kinase; ssgci 96.3 0.006 2.1E-07 54.3 6.5 27 243-269 8-34 (230)
330 3io5_A Recombination and repai 96.3 0.016 5.5E-07 54.0 9.5 75 245-321 30-126 (333)
331 2z0h_A DTMP kinase, thymidylat 96.3 0.0025 8.6E-08 55.5 4.0 26 246-271 3-28 (197)
332 2bbw_A Adenylate kinase 4, AK4 96.3 0.0024 8.2E-08 58.0 3.8 27 242-268 26-52 (246)
333 2xb4_A Adenylate kinase; ATP-b 96.3 0.0024 8.1E-08 57.1 3.5 24 245-268 2-25 (223)
334 2axn_A 6-phosphofructo-2-kinas 96.2 0.0058 2E-07 61.9 6.7 29 243-271 35-63 (520)
335 2r6a_A DNAB helicase, replicat 96.2 0.0033 1.1E-07 62.8 4.8 29 241-269 201-229 (454)
336 2j41_A Guanylate kinase; GMP, 96.2 0.0025 8.5E-08 56.0 3.5 26 242-267 5-30 (207)
337 1vec_A ATP-dependent RNA helic 96.2 0.049 1.7E-06 47.5 12.0 46 308-360 148-194 (206)
338 2j9r_A Thymidine kinase; TK1, 96.2 0.0062 2.1E-07 53.5 5.8 70 246-320 31-115 (214)
339 1vt4_I APAF-1 related killer D 96.2 0.015 5E-07 63.0 9.6 43 209-266 131-173 (1221)
340 3nwj_A ATSK2; P loop, shikimat 96.2 0.0027 9.3E-08 57.7 3.6 27 243-269 48-74 (250)
341 2v54_A DTMP kinase, thymidylat 96.2 0.0021 7.1E-08 56.4 2.7 25 243-267 4-28 (204)
342 3bh0_A DNAB-like replicative h 96.2 0.018 6.1E-07 54.3 9.2 29 241-269 66-94 (315)
343 2i1q_A DNA repair and recombin 96.2 0.0049 1.7E-07 58.4 5.4 26 242-267 97-122 (322)
344 3tau_A Guanylate kinase, GMP k 96.1 0.0031 1E-07 55.7 3.6 26 242-267 7-32 (208)
345 3iuy_A Probable ATP-dependent 96.1 0.044 1.5E-06 48.7 11.3 46 308-360 169-215 (228)
346 2bdt_A BH3686; alpha-beta prot 96.1 0.0026 9E-08 55.1 3.0 21 245-265 4-24 (189)
347 3c8u_A Fructokinase; YP_612366 96.1 0.0034 1.2E-07 55.4 3.5 28 242-269 21-48 (208)
348 1m7g_A Adenylylsulfate kinase; 96.1 0.0033 1.1E-07 55.6 3.4 27 242-268 24-50 (211)
349 3ake_A Cytidylate kinase; CMP 96.0 0.0035 1.2E-07 55.1 3.4 25 245-269 4-28 (208)
350 3tr0_A Guanylate kinase, GMP k 96.0 0.0041 1.4E-07 54.5 3.8 25 243-267 7-31 (205)
351 3b6e_A Interferon-induced heli 96.0 0.0062 2.1E-07 53.7 4.8 24 244-267 49-72 (216)
352 2grj_A Dephospho-COA kinase; T 96.0 0.0026 8.8E-08 55.4 2.2 24 245-268 14-37 (192)
353 1qde_A EIF4A, translation init 96.0 0.069 2.3E-06 47.2 11.8 46 308-360 157-203 (224)
354 2px0_A Flagellar biosynthesis 96.0 0.064 2.2E-06 50.0 11.9 28 242-269 104-131 (296)
355 1sky_E F1-ATPase, F1-ATP synth 96.0 0.0095 3.2E-07 58.8 6.4 28 242-269 150-177 (473)
356 1lvg_A Guanylate kinase, GMP k 95.9 0.0044 1.5E-07 54.2 3.6 26 243-268 4-29 (198)
357 3a00_A Guanylate kinase, GMP k 95.9 0.0036 1.2E-07 54.1 2.8 24 245-268 3-26 (186)
358 2v3c_C SRP54, signal recogniti 95.9 0.036 1.2E-06 54.5 10.3 29 242-270 98-126 (432)
359 1uj2_A Uridine-cytidine kinase 95.8 0.0032 1.1E-07 57.4 2.3 28 242-269 21-48 (252)
360 2if2_A Dephospho-COA kinase; a 95.8 0.0042 1.4E-07 54.5 3.0 22 245-267 3-24 (204)
361 2xxa_A Signal recognition part 95.8 0.033 1.1E-06 54.9 9.7 29 242-270 99-127 (433)
362 1vma_A Cell division protein F 95.8 0.013 4.3E-07 55.0 6.4 28 242-269 103-130 (306)
363 2q6t_A DNAB replication FORK h 95.8 0.02 6.8E-07 56.9 8.1 29 241-269 198-226 (444)
364 1z6g_A Guanylate kinase; struc 95.8 0.0046 1.6E-07 55.0 3.1 28 240-267 20-47 (218)
365 2ffh_A Protein (FFH); SRP54, s 95.8 0.076 2.6E-06 52.0 12.0 28 242-269 97-124 (425)
366 3ly5_A ATP-dependent RNA helic 95.8 0.061 2.1E-06 49.1 10.7 46 308-360 203-249 (262)
367 3asz_A Uridine kinase; cytidin 95.8 0.0048 1.6E-07 54.4 3.1 27 242-268 5-31 (211)
368 4e22_A Cytidylate kinase; P-lo 95.8 0.0045 1.5E-07 56.5 3.0 27 243-269 27-53 (252)
369 1jjv_A Dephospho-COA kinase; P 95.7 0.0039 1.3E-07 54.8 2.4 21 245-265 4-24 (206)
370 1uf9_A TT1252 protein; P-loop, 95.7 0.0047 1.6E-07 54.0 3.0 25 242-266 7-31 (203)
371 1q3t_A Cytidylate kinase; nucl 95.7 0.0059 2E-07 55.0 3.4 29 241-269 14-42 (236)
372 1gtv_A TMK, thymidylate kinase 95.6 0.0032 1.1E-07 55.7 1.5 25 245-269 2-26 (214)
373 2yhs_A FTSY, cell division pro 95.6 0.025 8.4E-07 56.3 7.9 33 237-269 287-319 (503)
374 1bif_A 6-phosphofructo-2-kinas 95.6 0.014 4.9E-07 58.4 6.2 30 242-271 38-67 (469)
375 3vkw_A Replicase large subunit 95.6 0.014 4.9E-07 57.1 6.0 22 244-265 162-183 (446)
376 1ltq_A Polynucleotide kinase; 95.6 0.0054 1.8E-07 57.5 2.8 23 244-266 3-25 (301)
377 3thx_B DNA mismatch repair pro 95.5 0.069 2.3E-06 57.5 11.4 25 243-267 673-697 (918)
378 4eaq_A DTMP kinase, thymidylat 95.5 0.0082 2.8E-07 53.8 3.7 28 242-269 25-52 (229)
379 2zj8_A DNA helicase, putative 95.5 0.063 2.2E-06 56.8 11.2 19 243-261 39-57 (720)
380 2qt1_A Nicotinamide riboside k 95.5 0.0065 2.2E-07 53.4 3.0 26 242-267 20-45 (207)
381 2jeo_A Uridine-cytidine kinase 95.5 0.0071 2.4E-07 54.8 3.3 28 242-269 24-51 (245)
382 2orv_A Thymidine kinase; TP4A 95.5 0.029 9.9E-07 49.7 7.0 91 245-353 21-124 (234)
383 2zts_A Putative uncharacterize 95.5 0.017 5.7E-07 52.2 5.8 25 242-266 29-53 (251)
384 3bor_A Human initiation factor 95.5 0.062 2.1E-06 48.2 9.6 46 308-360 175-221 (237)
385 2h92_A Cytidylate kinase; ross 95.5 0.0066 2.3E-07 53.9 3.0 27 243-269 3-29 (219)
386 3fmo_B ATP-dependent RNA helic 95.5 0.11 3.8E-06 48.4 11.5 48 308-361 237-285 (300)
387 2f6r_A COA synthase, bifunctio 95.5 0.0055 1.9E-07 56.9 2.4 23 243-265 75-97 (281)
388 3b9q_A Chloroplast SRP recepto 95.5 0.014 4.9E-07 54.6 5.3 29 241-269 98-126 (302)
389 2gxq_A Heat resistant RNA depe 95.5 0.11 3.8E-06 45.1 10.9 19 244-262 39-57 (207)
390 1xjc_A MOBB protein homolog; s 95.4 0.013 4.4E-07 49.5 4.4 29 244-272 5-33 (169)
391 1rz3_A Hypothetical protein rb 95.4 0.0078 2.7E-07 52.7 3.2 28 242-269 21-48 (201)
392 3d3q_A TRNA delta(2)-isopenten 95.4 0.0061 2.1E-07 57.7 2.5 24 245-268 9-32 (340)
393 1htw_A HI0065; nucleotide-bind 95.4 0.007 2.4E-07 50.8 2.6 26 242-267 32-57 (158)
394 3thx_A DNA mismatch repair pro 95.4 0.052 1.8E-06 58.6 10.0 23 245-267 664-686 (934)
395 4gp7_A Metallophosphoesterase; 95.4 0.0071 2.4E-07 51.5 2.7 22 242-263 8-29 (171)
396 2v9p_A Replication protein E1; 95.3 0.0095 3.3E-07 55.6 3.6 28 240-267 123-150 (305)
397 1odf_A YGR205W, hypothetical 3 95.3 0.01 3.5E-07 55.2 3.8 28 242-269 30-57 (290)
398 1znw_A Guanylate kinase, GMP k 95.3 0.0083 2.8E-07 52.8 3.0 26 242-267 19-44 (207)
399 3h1t_A Type I site-specific re 95.3 0.053 1.8E-06 56.0 9.5 28 243-270 198-225 (590)
400 2qmh_A HPR kinase/phosphorylas 95.3 0.0067 2.3E-07 52.5 2.1 25 243-267 34-58 (205)
401 2fwr_A DNA repair protein RAD2 95.2 0.054 1.9E-06 54.1 9.2 24 244-267 109-132 (472)
402 3lnc_A Guanylate kinase, GMP k 95.2 0.0055 1.9E-07 55.0 1.6 26 242-267 26-52 (231)
403 1wb9_A DNA mismatch repair pro 95.2 0.11 3.9E-06 55.1 11.8 25 244-268 608-632 (800)
404 3fe2_A Probable ATP-dependent 95.2 0.086 2.9E-06 47.4 9.5 46 308-360 178-224 (242)
405 1vht_A Dephospho-COA kinase; s 95.2 0.0096 3.3E-07 52.8 3.1 23 243-265 4-26 (218)
406 1s96_A Guanylate kinase, GMP k 95.2 0.012 4.2E-07 52.2 3.6 27 242-268 15-41 (219)
407 3pey_A ATP-dependent RNA helic 95.1 0.14 4.9E-06 49.3 11.7 22 243-264 44-65 (395)
408 1tf7_A KAIC; homohexamer, hexa 95.1 0.053 1.8E-06 55.0 8.7 27 242-268 38-66 (525)
409 3ber_A Probable ATP-dependent 95.1 0.12 4.1E-06 46.7 10.3 46 308-360 188-234 (249)
410 2pl3_A Probable ATP-dependent 95.1 0.15 5.3E-06 45.4 10.9 46 308-360 173-219 (236)
411 3fdi_A Uncharacterized protein 95.1 0.0092 3.1E-07 52.3 2.6 26 244-269 7-32 (201)
412 1zu4_A FTSY; GTPase, signal re 95.1 0.034 1.2E-06 52.4 6.7 31 240-270 102-132 (320)
413 3aez_A Pantothenate kinase; tr 95.1 0.013 4.5E-07 55.1 3.7 28 242-269 89-116 (312)
414 2og2_A Putative signal recogni 95.0 0.02 6.7E-07 54.9 4.9 30 240-269 154-183 (359)
415 4edh_A DTMP kinase, thymidylat 95.0 0.014 4.9E-07 51.5 3.6 29 243-271 6-34 (213)
416 3tqc_A Pantothenate kinase; bi 95.0 0.014 4.7E-07 55.0 3.7 29 367-395 223-251 (321)
417 3lv8_A DTMP kinase, thymidylat 95.0 0.018 6.2E-07 51.7 4.3 31 242-272 26-56 (236)
418 1rj9_A FTSY, signal recognitio 95.0 0.016 5.3E-07 54.4 4.0 28 242-269 101-128 (304)
419 3e2i_A Thymidine kinase; Zn-bi 95.0 0.043 1.5E-06 48.1 6.4 25 245-269 30-54 (219)
420 1rif_A DAR protein, DNA helica 94.9 0.062 2.1E-06 49.6 8.0 24 245-268 130-153 (282)
421 1a7j_A Phosphoribulokinase; tr 94.9 0.01 3.5E-07 55.3 2.5 27 243-269 5-31 (290)
422 2va8_A SSO2462, SKI2-type heli 94.8 0.16 5.4E-06 53.7 11.7 22 243-264 46-67 (715)
423 3ice_A Transcription terminati 94.8 0.037 1.3E-06 53.0 6.0 31 239-269 170-200 (422)
424 1np6_A Molybdopterin-guanine d 94.8 0.026 9E-07 48.0 4.6 29 243-271 6-34 (174)
425 1wrb_A DJVLGB; RNA helicase, D 94.8 0.21 7.1E-06 45.1 11.0 19 244-262 61-79 (253)
426 3bgw_A DNAB-like replicative h 94.8 0.087 3E-06 52.1 8.9 29 241-269 195-223 (444)
427 1x6v_B Bifunctional 3'-phospho 94.8 0.017 5.8E-07 59.3 3.8 38 242-283 51-88 (630)
428 1cr0_A DNA primase/helicase; R 94.7 0.019 6.5E-07 53.6 3.9 29 241-269 33-61 (296)
429 1t6n_A Probable ATP-dependent 94.7 0.3 1E-05 42.9 11.6 23 244-266 52-74 (220)
430 3dkp_A Probable ATP-dependent 94.7 0.22 7.4E-06 44.7 10.8 18 244-261 67-84 (245)
431 2j37_W Signal recognition part 94.7 0.33 1.1E-05 48.6 12.9 30 242-271 100-129 (504)
432 3v9p_A DTMP kinase, thymidylat 94.6 0.02 6.9E-07 51.0 3.5 28 243-270 25-52 (227)
433 2z0m_A 337AA long hypothetical 94.6 0.22 7.4E-06 46.8 11.1 22 244-265 32-53 (337)
434 1hv8_A Putative ATP-dependent 94.6 0.16 5.6E-06 48.3 10.3 23 244-266 45-67 (367)
435 3tqf_A HPR(Ser) kinase; transf 94.6 0.017 6E-07 48.6 2.8 23 243-265 16-38 (181)
436 3ld9_A DTMP kinase, thymidylat 94.6 0.021 7.2E-07 50.7 3.5 31 242-272 20-51 (223)
437 2qm8_A GTPase/ATPase; G protei 94.5 0.069 2.4E-06 50.7 7.3 28 242-269 54-81 (337)
438 1sq5_A Pantothenate kinase; P- 94.5 0.021 7.1E-07 53.7 3.5 27 242-268 79-105 (308)
439 4b3f_X DNA-binding protein smu 94.5 0.033 1.1E-06 58.1 5.3 24 245-268 207-230 (646)
440 4tmk_A Protein (thymidylate ki 94.5 0.031 1.1E-06 49.3 4.4 29 244-272 4-32 (213)
441 2ocp_A DGK, deoxyguanosine kin 94.4 0.016 5.3E-07 52.4 2.4 25 244-268 3-27 (241)
442 1g8f_A Sulfate adenylyltransfe 94.4 0.017 5.9E-07 57.9 2.8 28 242-269 394-421 (511)
443 3e70_C DPA, signal recognition 94.4 0.023 7.7E-07 53.8 3.5 28 242-269 128-155 (328)
444 3hdt_A Putative kinase; struct 94.4 0.02 6.7E-07 51.0 2.8 26 244-269 15-40 (223)
445 2f1r_A Molybdopterin-guanine d 94.3 0.015 5.2E-07 49.4 1.8 26 245-270 4-29 (171)
446 1ewq_A DNA mismatch repair pro 94.3 0.18 6E-06 53.4 10.3 24 245-268 578-601 (765)
447 3b85_A Phosphate starvation-in 94.3 0.021 7.3E-07 50.2 2.8 23 244-266 23-45 (208)
448 2p6r_A Afuhel308 helicase; pro 94.2 0.23 7.8E-06 52.3 11.2 21 243-263 40-60 (702)
449 2j0s_A ATP-dependent RNA helic 94.2 0.31 1.1E-05 47.3 11.5 21 244-264 75-95 (410)
450 1q0u_A Bstdead; DEAD protein, 94.2 0.12 4.2E-06 45.5 7.8 46 308-360 152-198 (219)
451 3tmk_A Thymidylate kinase; pho 94.2 0.032 1.1E-06 49.3 3.8 27 243-269 5-31 (216)
452 1m8p_A Sulfate adenylyltransfe 94.1 0.026 8.8E-07 57.8 3.5 29 242-270 395-423 (573)
453 3fht_A ATP-dependent RNA helic 94.1 0.26 8.9E-06 47.8 10.7 19 243-261 64-82 (412)
454 3cr8_A Sulfate adenylyltranfer 94.1 0.018 6.2E-07 58.5 2.2 28 242-269 368-395 (552)
455 2oxc_A Probable ATP-dependent 94.1 0.47 1.6E-05 42.0 11.5 47 308-360 168-215 (230)
456 2xgj_A ATP-dependent RNA helic 94.1 0.39 1.3E-05 52.7 12.8 21 244-264 102-122 (1010)
457 2o8b_B DNA mismatch repair pro 94.1 0.25 8.5E-06 54.1 11.2 21 244-264 790-810 (1022)
458 3p32_A Probable GTPase RV1496/ 94.1 0.048 1.6E-06 52.3 5.1 28 242-269 78-105 (355)
459 3tif_A Uncharacterized ABC tra 94.0 0.025 8.6E-07 50.8 2.8 25 241-265 29-53 (235)
460 1c9k_A COBU, adenosylcobinamid 93.9 0.059 2E-06 45.9 4.8 21 246-266 2-22 (180)
461 2db3_A ATP-dependent RNA helic 93.9 0.41 1.4E-05 47.1 11.7 46 308-360 205-253 (434)
462 2onk_A Molybdate/tungstate ABC 93.9 0.027 9.4E-07 50.7 2.8 26 241-267 23-48 (240)
463 2cbz_A Multidrug resistance-as 93.9 0.027 9.3E-07 50.6 2.8 27 241-267 29-55 (237)
464 2pcj_A ABC transporter, lipopr 93.9 0.026 8.8E-07 50.3 2.6 25 242-266 29-53 (224)
465 3fmp_B ATP-dependent RNA helic 93.9 0.28 9.5E-06 49.0 10.6 19 242-260 130-148 (479)
466 1s2m_A Putative ATP-dependent 93.8 0.4 1.4E-05 46.3 11.4 44 308-358 165-209 (400)
467 1wp9_A ATP-dependent RNA helic 93.8 0.44 1.5E-05 47.1 11.9 37 245-284 25-61 (494)
468 1nrj_B SR-beta, signal recogni 93.8 0.038 1.3E-06 48.6 3.5 25 242-266 11-35 (218)
469 1lw7_A Transcriptional regulat 93.7 0.025 8.6E-07 54.6 2.4 26 243-268 170-195 (365)
470 1tf7_A KAIC; homohexamer, hexa 93.7 0.095 3.3E-06 53.2 6.8 28 242-269 280-307 (525)
471 3ihw_A Centg3; RAS, centaurin, 93.7 0.044 1.5E-06 46.9 3.7 24 242-265 19-42 (184)
472 1p5z_B DCK, deoxycytidine kina 93.7 0.01 3.5E-07 54.4 -0.4 26 242-267 23-48 (263)
473 3oiy_A Reverse gyrase helicase 93.7 0.24 8.2E-06 48.3 9.6 22 244-265 37-58 (414)
474 3kta_A Chromosome segregation 93.7 0.035 1.2E-06 47.4 3.1 25 244-268 27-51 (182)
475 3fho_A ATP-dependent RNA helic 93.7 0.27 9.1E-06 49.6 10.0 20 243-262 158-177 (508)
476 3l9o_A ATP-dependent RNA helic 93.7 0.46 1.6E-05 52.6 12.5 102 243-355 199-333 (1108)
477 1sgw_A Putative ABC transporte 93.6 0.033 1.1E-06 49.2 2.8 25 242-266 34-58 (214)
478 1b0u_A Histidine permease; ABC 93.6 0.033 1.1E-06 50.9 2.8 26 241-266 30-55 (262)
479 1q57_A DNA primase/helicase; d 93.6 0.17 5.9E-06 51.0 8.4 28 242-269 241-268 (503)
480 3sop_A Neuronal-specific septi 93.6 0.037 1.3E-06 50.8 3.1 23 245-267 4-26 (270)
481 2oca_A DAR protein, ATP-depend 93.5 0.23 7.8E-06 50.1 9.2 25 244-268 129-153 (510)
482 3fvq_A Fe(3+) IONS import ATP- 93.5 0.038 1.3E-06 52.8 3.2 26 242-267 29-54 (359)
483 1pzn_A RAD51, DNA repair and r 93.5 0.033 1.1E-06 53.3 2.7 26 242-267 130-155 (349)
484 4a4z_A Antiviral helicase SKI2 93.4 0.43 1.5E-05 52.3 11.7 24 244-267 55-78 (997)
485 2zu0_C Probable ATP-dependent 93.4 0.043 1.5E-06 50.3 3.4 26 241-266 44-69 (267)
486 2f9l_A RAB11B, member RAS onco 93.4 0.04 1.4E-06 47.8 2.9 23 244-266 6-28 (199)
487 1g6h_A High-affinity branched- 93.4 0.027 9.3E-07 51.4 1.9 26 242-267 32-57 (257)
488 1oix_A RAS-related protein RAB 93.4 0.04 1.4E-06 47.5 2.9 23 244-266 30-52 (191)
489 2wsm_A Hydrogenase expression/ 93.4 0.09 3.1E-06 46.3 5.3 26 243-268 30-55 (221)
490 2olj_A Amino acid ABC transpor 93.4 0.038 1.3E-06 50.5 2.8 26 241-266 48-73 (263)
491 2d2e_A SUFC protein; ABC-ATPas 93.3 0.043 1.5E-06 49.8 3.2 25 242-266 28-52 (250)
492 3eiq_A Eukaryotic initiation f 93.3 0.31 1.1E-05 47.3 9.7 21 244-264 78-98 (414)
493 3gfo_A Cobalt import ATP-bindi 93.3 0.033 1.1E-06 51.3 2.3 26 242-267 33-58 (275)
494 4f4c_A Multidrug resistance pr 93.3 0.29 9.9E-06 55.4 10.3 23 245-267 446-468 (1321)
495 2ghi_A Transport protein; mult 93.3 0.04 1.4E-06 50.3 2.8 26 241-266 44-69 (260)
496 2ff7_A Alpha-hemolysin translo 93.2 0.038 1.3E-06 50.0 2.6 26 242-267 34-59 (247)
497 2ixe_A Antigen peptide transpo 93.2 0.04 1.4E-06 50.6 2.8 27 241-267 43-69 (271)
498 1mv5_A LMRA, multidrug resista 93.2 0.035 1.2E-06 50.2 2.3 26 242-267 27-52 (243)
499 2pze_A Cystic fibrosis transme 93.2 0.04 1.4E-06 49.2 2.7 26 242-267 33-58 (229)
500 3rlf_A Maltose/maltodextrin im 93.2 0.048 1.6E-06 52.5 3.4 26 242-267 28-53 (381)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-38 Score=307.86 Aligned_cols=236 Identities=19% Similarity=0.284 Sum_probs=197.9
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++|+|++++|+.|++. +.+|..+++.+..++..+|.++|||||||||||++|+++|++++. +|+.+
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~---v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~-------~f~~v 213 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEV---IELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC-------KFIRV 213 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHH---THHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCCHHHhCCHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC-------CceEE
Confidence 35799999999999999988 566667777777677788999999999999999999999999987 99999
Q ss_pred ecccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
+++++.++|+|++++.++++|..| .+|||||||+|.++++|..++ +....+++++||..||+ ..++||+|
T Consensus 214 ~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaA 293 (405)
T 4b4t_J 214 SGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMA 293 (405)
T ss_dssp EGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEE
T ss_pred EhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEec
Confidence 999999999999999999999877 459999999999999886443 33456889999999986 56778887
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+..... ||+++| |||..|+||.|+.++|.+||+.++++. .+..+++.+.++..+.
T Consensus 294 TNrpd~L-----DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~---------~l~~dvdl~~lA~~t~-------- 351 (405)
T 4b4t_J 294 TNRLDIL-----DPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM---------NLTRGINLRKVAEKMN-------- 351 (405)
T ss_dssp ESCSSSS-----CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS---------BCCSSCCHHHHHHHCC--------
T ss_pred cCChhhC-----CHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC---------CCCccCCHHHHHHHCC--------
Confidence 6544332 999988 999999999999999999999998865 3456677777766665
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
..+|++|++++.+|...+..+ ....|+.+||..|++++.|
T Consensus 352 -G~SGADi~~l~~eA~~~Air~---------~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 352 -GCSGADVKGVCTEAGMYALRE---------RRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp -SCCHHHHHHHHHHHHHHHHHT---------TCSBCCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHHhC
Confidence 456899999999998776432 2357999999999999876
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-37 Score=302.01 Aligned_cols=237 Identities=20% Similarity=0.307 Sum_probs=196.7
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++|+|++++|+.|++. +.++..+++.+..++..++.++|||||||||||++|+++|++++. +|+.+
T Consensus 178 ~v~~~DIgGld~~k~~L~e~---v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~-------~fi~v 247 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKES---VELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA-------TFLRI 247 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHH---HHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCcceecCcHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC-------CEEEE
Confidence 35799999999999999988 455556666666667778999999999999999999999999987 99999
Q ss_pred ecccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
+++++.++|+|++++.++.+|..| .+|||||||+|.++++|...+ +....+++++||..||+ +.++||+|
T Consensus 248 ~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaA 327 (437)
T 4b4t_I 248 VGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMA 327 (437)
T ss_dssp ESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEE
T ss_pred EHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEe
Confidence 999999999999999999999876 459999999999999886432 34567888999999974 56788887
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+.... + ||+++| |||..|+|+.||.++|.+||+.++++. .+..+++.+.++..+.
T Consensus 328 TNrpd~--L---DpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~---------~l~~dvdl~~LA~~T~-------- 385 (437)
T 4b4t_I 328 TNKIET--L---DPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM---------NLSEDVNLETLVTTKD-------- 385 (437)
T ss_dssp ESCSTT--C---CTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS---------CBCSCCCHHHHHHHCC--------
T ss_pred CCChhh--c---CHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC---------CCCCcCCHHHHHHhCC--------
Confidence 654433 2 999998 999999999999999999999999865 3456677777776665
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHhc
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
..+|++|++++.+|...+..+ ....|+.+||++|++++.|.
T Consensus 386 -GfSGADI~~l~~eA~~~Air~---------~~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 386 -DLSGADIQAMCTEAGLLALRE---------RRMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp -SCCHHHHHHHHHHHHHHHHHT---------TCSCBCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHc---------CCCccCHHHHHHHHHHHhCC
Confidence 456899999999998776433 23469999999999999873
No 3
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-37 Score=298.46 Aligned_cols=235 Identities=20% Similarity=0.265 Sum_probs=195.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++|+|++++|+.|++. +.++..+++.+..++..++.++|||||||||||++|+++|++++. +|+.++
T Consensus 206 vt~~DIgGl~~~k~~L~e~---V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~-------~fi~vs 275 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREV---VELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA-------TFIRVI 275 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHH---THHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC-------EEEEEE
T ss_pred CCHHHhccHHHHHHHHHHH---HHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC-------CeEEEE
Confidence 5789999999999999987 455556666666667778999999999999999999999999987 999999
Q ss_pred cccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
++++.++|+|++++.++.+|..| .+|||||||+|.++++|..++ .....+++++||..|++ +.++||+||
T Consensus 276 ~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaAT 355 (467)
T 4b4t_H 276 GSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFAT 355 (467)
T ss_dssp GGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEEC
T ss_pred hHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 99999999999999999999876 459999999999999886543 23456788999999985 567888886
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+.... + ||+++| |||..|+|+.|+.++|.+||+.++++.. +..+++.+.|+..+.
T Consensus 356 Nrpd~--L---DpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~---------l~~dvdl~~LA~~T~--------- 412 (467)
T 4b4t_H 356 NRPNT--L---DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS---------VERGIRWELISRLCP--------- 412 (467)
T ss_dssp SCTTS--B---CHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC---------BCSSCCHHHHHHHCC---------
T ss_pred CCccc--C---ChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC---------CCCCCCHHHHHHHCC---------
Confidence 54433 2 999988 9999999999999999999999988653 456677777776665
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
..+|++|++++.+|...+..+ ....|+.+||.+|++++.+
T Consensus 413 GfSGADI~~l~~eAa~~Air~---------~~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 413 NSTGAELRSVCTEAGMFAIRA---------RRKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp SCCHHHHHHHHHHHHHHHHHH---------TCSSBCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHc---------CCCccCHHHHHHHHHHHhc
Confidence 456899999999988776433 2346999999999999864
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=299.71 Aligned_cols=237 Identities=20% Similarity=0.271 Sum_probs=196.3
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++|+|++++|+.|++. +.+|..+++.+..++..++.++|||||||||||++|+++|++++. +|+.+
T Consensus 177 ~v~~~digGl~~~k~~l~e~---v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~-------~~~~v 246 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREV---IELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA-------NFIFS 246 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHH---HHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCChhHhCChHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEE
Confidence 35799999999999999988 555666666666677788999999999999999999999999987 99999
Q ss_pred ecccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
+++++.++|+|++++.++.+|..| .+|||||||+|.++++|..++ +.....++++||..||+ +.++||+|
T Consensus 247 ~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~A 326 (437)
T 4b4t_L 247 PASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMA 326 (437)
T ss_dssp EGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEE
T ss_pred ehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEe
Confidence 999999999999999999999876 469999999999999886443 33456788999999986 45777777
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+.... + ||+++| |||..|+||.|+.++|.+||+.++++.. ...+++.+.++..+.
T Consensus 327 TNrp~~--L---DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~---------~~~d~dl~~lA~~t~-------- 384 (437)
T 4b4t_L 327 TNRPDT--L---DPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVK---------KTGEFDFEAAVKMSD-------- 384 (437)
T ss_dssp ESSTTS--S---CTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSC---------BCSCCCHHHHHHTCC--------
T ss_pred cCCchh--h---CHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCC---------CCcccCHHHHHHhCC--------
Confidence 654333 2 999977 6999999999999999999999998653 445677766666555
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHhc
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
..+|++|++++..|...+..+ ....|+.+||..|++++.|.
T Consensus 385 -G~sGADi~~l~~eA~~~air~---------~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 385 -GFNGADIRNCATEAGFFAIRD---------DRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp -SCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHHHT
T ss_pred -CCCHHHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHHHhc
Confidence 456899999999988776432 23469999999999999874
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-37 Score=302.03 Aligned_cols=237 Identities=21% Similarity=0.278 Sum_probs=196.4
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++|+|++.+|+.|++. +.+|..+++.+..++..++.++|||||||||||++|+++|++++. +|+.+
T Consensus 177 ~~t~~digGl~~~k~~l~e~---v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~-------~f~~v 246 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEA---IVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA-------TFLKL 246 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHH---THHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCChHhcCcHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC-------CEEEE
Confidence 45799999999999999987 556666666666677778999999999999999999999999987 99999
Q ss_pred ecccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
+++++.++|+|++++.++.+|..| .+|||||||+|.++++|...+ +....+++++||..||+ ..++||+|
T Consensus 247 ~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaa 326 (434)
T 4b4t_M 247 AAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAA 326 (434)
T ss_dssp EGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEE
T ss_pred ehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEe
Confidence 999999999999999999999876 469999999999999886433 23456788999999986 45777777
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
|+.... + ||++++ |||..|+||.|+.++|.+||+.++++.. +..+++.+.++..+.
T Consensus 327 TNrp~~--L---D~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~---------~~~dvdl~~lA~~t~-------- 384 (434)
T 4b4t_M 327 TNRVDV--L---DPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT---------TDDDINWQELARSTD-------- 384 (434)
T ss_dssp CSSCCC--C---CTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC---------BCSCCCHHHHHHHCS--------
T ss_pred CCCchh--c---CHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC---------CCCcCCHHHHHHhCC--------
Confidence 654333 2 999977 9999999999999999999999998653 456677777766665
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHhc
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
..+|++|++++.+|...+..+ ....|+.+||.+|+++++|.
T Consensus 385 -G~sGADi~~l~~eA~~~a~r~---------~~~~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 385 -EFNGAQLKAVTVEAGMIALRN---------GQSSVKHEDFVEGISEVQAR 425 (434)
T ss_dssp -SCCHHHHHHHHHHHHHHHHHH---------TCSSBCHHHHHHHHHSCSSS
T ss_pred -CCCHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHHhCC
Confidence 456899999999988776433 23469999999999998774
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-35 Score=291.77 Aligned_cols=235 Identities=20% Similarity=0.287 Sum_probs=193.5
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEe
Q 011578 202 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 281 (482)
Q Consensus 202 ~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~ 281 (482)
...|++++|++.+|+.|++. +.++..+++.+..++..++.++|||||||||||++|+++|++++. +|+.+
T Consensus 168 ~v~~~digGl~~~k~~l~e~---v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~-------~~~~v 237 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREA---VELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA-------AFIRV 237 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHH---HHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCCHHHhccHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CeEEE
Confidence 35789999999999999987 455556666666667778999999999999999999999999987 99999
Q ss_pred ecccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcC----CcEEEEEe
Q 011578 282 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFA 351 (482)
Q Consensus 282 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~----~~~~vi~~ 351 (482)
+++++.++|+|++++.++++|..| .+|||||||+|.++++|... ++....+++++||..||+ ..++||+|
T Consensus 238 ~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~a 317 (428)
T 4b4t_K 238 NGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMA 317 (428)
T ss_dssp EGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEE
T ss_pred ecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEe
Confidence 999999999999999999999876 45999999999999988533 344567899999999985 45777777
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCC-CCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhh
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFN-DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 428 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~-~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 428 (482)
|+.... + ||+++| |||..|+|| .|+.++|..||+.++++.. +..+++.+.++..+.
T Consensus 318 TN~~~~--L---D~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~---------l~~~~dl~~lA~~t~------- 376 (428)
T 4b4t_K 318 TNRADT--L---DPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS---------LAPEADLDSLIIRND------- 376 (428)
T ss_dssp ESCSSS--C---CHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC---------BCTTCCHHHHHHHTT-------
T ss_pred cCChhh--c---ChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC---------CCcccCHHHHHHHCC-------
Confidence 654332 2 899987 999999997 7999999999999998653 456677777766665
Q ss_pred ccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 429 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 429 ~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
..+|++|++++.+|...+..+ ....|+.+||++|+.++.
T Consensus 377 --G~sgadi~~l~~eA~~~a~r~---------~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 377 --SLSGAVIAAIMQEAGLRAVRK---------NRYVILQSDLEEAYATQV 415 (428)
T ss_dssp --TCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHS
T ss_pred --CCCHHHHHHHHHHHHHHHHHC---------CCCCCCHHHHHHHHHHhh
Confidence 456899999999998776433 234699999999998754
No 7
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.1e-33 Score=246.82 Aligned_cols=159 Identities=32% Similarity=0.480 Sum_probs=144.4
Q ss_pred hHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHH
Q 011578 15 ATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK 94 (482)
Q Consensus 15 t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~ 94 (482)
++|+.||+.|+.+.|+.||+ .+.++|..+.. |+||||+|+..++.+++++|++ .+++++.+|..|+||||+|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~-~Gadvn~~d~~-g~t~l~~a~~~~~~~~~~~ll~----~gad~~~~d~~g~TpLh~A~~ 79 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIE-NGADVNASDSD-GRTPLHHAAENGHKEVVKLLIS----KGADVNAKDSDGRTPLHHAAE 79 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHh----cccchhhhccCCCCHHHHHHH
Confidence 57999999999999999995 57889999987 9999999999999999999999 688999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHH
Q 011578 95 NGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLREL 174 (482)
Q Consensus 95 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~l 174 (482)
.|+.+++++|+++|+++|.+|.+|+||||+|+ ..|+.+++++|+++|+|++.+|.+|+||||+ |...++.+++++
T Consensus 80 ~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~----~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~-A~~~g~~~iv~~ 154 (169)
T 4gpm_A 80 NGHKEVVKLLISKGADVNAKDSDGRTPLHHAA----ENGHKEVVKLLISKGADVNTSDSDGRTPLDL-AREHGNEEVVKL 154 (169)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCccccCCCCCCHHHH-HHHcCCHHHHHH
Confidence 99999999999999999999999999999999 8899999999999999999999999999955 455678899999
Q ss_pred HHhhhHHHHH
Q 011578 175 LLWHSEEQRK 184 (482)
Q Consensus 175 L~~~~~~~~~ 184 (482)
|+++|++...
T Consensus 155 Ll~~GA~ie~ 164 (169)
T 4gpm_A 155 LEKQGGWLEH 164 (169)
T ss_dssp HHTC------
T ss_pred HHHCCCCcCC
Confidence 9999998653
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=9.3e-35 Score=305.37 Aligned_cols=245 Identities=17% Similarity=0.256 Sum_probs=166.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++++|+.|.+. +.++..+++.+...+..++.++|||||||||||++|+++|++++. +|+.++
T Consensus 474 v~w~diggl~~~k~~l~e~---v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~-------~f~~v~ 543 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQEL---VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIK 543 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTT---TTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC-------EEEECC
T ss_pred CCHHHhCCHHHHHHHHHHH---HHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC-------ceEEec
Confidence 3578899999999999987 566777777777888889999999999999999999999999876 999999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
.+++.++|+|+++++++++|+.|+ +|||||||||.+.++|+.. ++....+++++||.+||+ ..++||+||
T Consensus 544 ~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aT 623 (806)
T 3cf2_A 544 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 623 (806)
T ss_dssp HHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-
T ss_pred cchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeC
Confidence 999999999999999999998874 5999999999999988633 345567999999999986 457777776
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+.... + ||+++| |||..|+||.|+.++|.+||+.++++. .+..+++.+.|++.+.+++
T Consensus 624 N~p~~--l---D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~---------~~~~~~dl~~la~~t~g~S------ 683 (806)
T 3cf2_A 624 NRPDI--I---DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS---------PVAKDVDLEFLAKMTNGFS------ 683 (806)
T ss_dssp CCSSS--S---CHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC-----------CCC--------------------
T ss_pred CCchh--C---CHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCC---------CCCCCCCHHHHHHhCCCCC------
Confidence 54433 2 999988 999999999999999999999988764 3456777788888887665
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCC----------------CChhhhhcccHHHHHHHHHHHHhc
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDC----------------LDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~----------------~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
|++|.+++.+|...+..+..... ...+....|+.+||++|+++++|+
T Consensus 684 ---Gadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pS 746 (806)
T 3cf2_A 684 ---GADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 746 (806)
T ss_dssp -----CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCC
Confidence 78889999988877766532110 111224479999999999999985
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.98 E-value=3.4e-33 Score=293.48 Aligned_cols=246 Identities=20% Similarity=0.299 Sum_probs=206.3
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
-.|++|+|++.+++.|++. +.++..+++.+..++..+|.++|||||||||||++||++|++++. +|+.++
T Consensus 201 v~~~dIgGl~~~~~~l~e~---v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~-------~~~~v~ 270 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEM---VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLIN 270 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHH---HHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC-------EEEEEE
T ss_pred CChhhhcCHHHHHHHHHHH---HHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------eEEEEE
Confidence 4689999999999999987 567778888888899999999999999999999999999998876 899999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecCch
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE 355 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~~ 355 (482)
++++.++|+|+++.+++++|+.|+ ++||||||+|.+++++++.+++...+++++|+..|++ +.++||++|+..
T Consensus 271 ~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~ 350 (806)
T 3cf2_A 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (806)
T ss_dssp HHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSST
T ss_pred hHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCCh
Confidence 999999999999999999999875 5999999999999999877788889999999999975 567888876544
Q ss_pred hHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccC
Q 011578 356 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 433 (482)
Q Consensus 356 ~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (482)
.. + +|++++ ||+..|+++.|+.++|.+||+.++++. .+..+++...++..+. ...
T Consensus 351 d~--L---D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~---------~~~~dvdl~~lA~~T~---------Gfs 407 (806)
T 3cf2_A 351 NS--I---DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM---------KLADDVDLEQVANETH---------GHV 407 (806)
T ss_dssp TT--S---CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS---------EECTTCCHHHHHHHCC---------SCC
T ss_pred hh--c---CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCC---------CCCcccCHHHHHHhcC---------CCC
Confidence 33 2 999998 999999999999999999999988764 3456677776666665 455
Q ss_pred cchhHHHHHHHHHHhhhhhc------CCCCChh--hhhcccHHHHHHHHHHHHhcC
Q 011578 434 GGLVDPMLVNARENLDLRLS------FDCLDTD--ELRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~~~r~~------~~~~~~~--~~~~i~~~d~~~al~~~~~~~ 481 (482)
+++|.+++.+|...+..|.. ......+ +...|+.+||..|++.++|..
T Consensus 408 gaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 408 GADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcc
Confidence 78889999988887766632 1112222 345789999999999988864
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=250.21 Aligned_cols=246 Identities=17% Similarity=0.200 Sum_probs=194.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+|+.|.+. +.++..++..+... ..++.++||+||||||||++|+++|+++. ..+|+.++
T Consensus 9 ~~~~di~G~~~~k~~l~~~---v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~~------~~~~~~i~ 78 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEA---VILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEAN------NSTFFSIS 78 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHH---HHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHTT------SCEEEEEE
T ss_pred CCHHHhcCHHHHHHHHHHH---HHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHcC------CCcEEEEE
Confidence 3588999999999999987 45566666665432 34668999999999999999999999872 23899999
Q ss_pred cccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-----CcEEEEEecCc
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYS 354 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~~vi~~~~~ 354 (482)
++++.++|+|+++..++.+|..+ .++||||||+|.+.++++....+...+++++|+..|++ ..++||++|+.
T Consensus 79 ~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 79 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp CCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred hHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 99999999999999999999765 45899999999999988877777788999999999974 55778877654
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
... .+|++++||+..+.++.|+.++|.+|++.++.+.. ..++...+..++.... ..++
T Consensus 159 ~~~-----ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-----------~~l~~~~l~~la~~t~------G~sg 216 (322)
T 1xwi_A 159 PWV-----LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQ-----------NSLTEADFRELGRKTD------GYSG 216 (322)
T ss_dssp TTT-----SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCC-----------BCCCHHHHHHHHHTCT------TCCH
T ss_pred ccc-----CCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCC-----------CCCCHHHHHHHHHHcC------CCCH
Confidence 422 28999999999999999999999999999987643 2345666777766542 5678
Q ss_pred chhHHHHHHHHHHhhhhhcCC--------------------------------------CCChhh--hhcccHHHHHHHH
Q 011578 435 GLVDPMLVNARENLDLRLSFD--------------------------------------CLDTDE--LRTITLEDLEAGL 474 (482)
Q Consensus 435 ~~l~~~~~~a~~~~~~r~~~~--------------------------------------~~~~~~--~~~i~~~d~~~al 474 (482)
++|.+++..|...+..++... ....+. ...|+.+||.+|+
T Consensus 217 adl~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al 296 (322)
T 1xwi_A 217 ADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSL 296 (322)
T ss_dssp HHHHHHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHH
Confidence 999999999988776654210 000111 2379999999999
Q ss_pred HHHHhc
Q 011578 475 KLLLRL 480 (482)
Q Consensus 475 ~~~~~~ 480 (482)
++++|.
T Consensus 297 ~~~~ps 302 (322)
T 1xwi_A 297 SNTKPT 302 (322)
T ss_dssp HTCCCS
T ss_pred HhCCCC
Confidence 999885
No 11
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=8.6e-31 Score=227.98 Aligned_cols=161 Identities=30% Similarity=0.469 Sum_probs=147.2
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChH
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tp 88 (482)
.++.+.|+||.|+..|+.+.++.|+...+.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+||
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~ 78 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGR-QSTPLHFAAGYNRVSVVEYLLQ----HGADVHAKDKGGLVP 78 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccC-CCCHHHHHHHcChHHHHHHHHh----cCCCCCccCCCCCCH
Confidence 35678999999999999999999998788888887776 9999999999999999999999 578899999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCC
Q 011578 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168 (482)
Q Consensus 89 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~ 168 (482)
||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||+ |.. ++
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~-a~~-~~ 152 (165)
T 3twr_A 79 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA----AKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKD-GD 152 (165)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCTGGG-SCT-TC
T ss_pred HHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCcccCCCCCChhHh-Hhc-CC
Confidence 99999999999999999999999999999999999999 8899999999999999999999999999955 554 67
Q ss_pred hHHHHHHHhhhH
Q 011578 169 AKLRELLLWHSE 180 (482)
Q Consensus 169 ~~~~~lL~~~~~ 180 (482)
.+++++|...|+
T Consensus 153 ~~i~~~L~~~gA 164 (165)
T 3twr_A 153 TDIQDLLRGDAA 164 (165)
T ss_dssp HHHHHHHHTC--
T ss_pred hHHHHHHhhccc
Confidence 799999998875
No 12
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.97 E-value=6.6e-30 Score=245.97 Aligned_cols=262 Identities=37% Similarity=0.558 Sum_probs=213.0
Q ss_pred HHHHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC
Q 011578 198 MDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 276 (482)
Q Consensus 198 ~~~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~ 276 (482)
..+....++ +++|++.+++.+.+++.....+..+...+.... .+..+++|+||||||||++|+++|+.+...+.....
T Consensus 22 ~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~ 100 (309)
T 3syl_A 22 AKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE-TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKG 100 (309)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS-CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSC
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCC
Confidence 344555666 799999999999999887777777777776543 356689999999999999999999999988877788
Q ss_pred CeEEeecccccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCc
Q 011578 277 RVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYS 354 (482)
Q Consensus 277 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~ 354 (482)
+++.++++++.+.++|++...+..+|+.+.++||||||+|.+.+.++. +.....+++.|++.|+. ..+++|+++++
T Consensus 101 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 101 HLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENNRDDLVVILAGYA 178 (309)
T ss_dssp CEEEECGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred cEEEEcHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence 999999999999999999999999999999999999999999876542 33446788899999986 46788888888
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhH-hhccccC
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE-KQRREMN 433 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ 433 (482)
..+..+...+|+|++||+..++|++|+.+++.+|++.++.+.. ..++++++..+....... ....++|
T Consensus 179 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~gn 247 (309)
T 3syl_A 179 DRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQN-----------YQMTPEAETALRAYIGLRRNQPHFAN 247 (309)
T ss_dssp HHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTT-----------CEECHHHHHHHHHHHHHHTTSSSCCH
T ss_pred HHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHHhccCCCCCc
Confidence 7777666678999999999999999999999999999998643 356777777777653211 1123789
Q ss_pred cchhHHHHHHHHHHhhhhhcC---CCCChhhhhcccHHHHHHH
Q 011578 434 GGLVDPMLVNARENLDLRLSF---DCLDTDELRTITLEDLEAG 473 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~~~r~~~---~~~~~~~~~~i~~~d~~~a 473 (482)
+|.++++++.|...+..|+.. +..+.++...++.+||..+
T Consensus 248 ~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~~i~~~d~~~~ 290 (309)
T 3syl_A 248 ARSIRNALDRARLRQANRLFTASSGPLDARALSTIAEEDIRAS 290 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---CEEHHHHHEECHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHhhccHHHhccc
Confidence 999999999999998888764 3455677888999998753
No 13
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=5.5e-31 Score=230.84 Aligned_cols=164 Identities=27% Similarity=0.348 Sum_probs=149.9
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHH
Q 011578 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A 92 (482)
+.||||.||..|+.+.++.++..++..++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|.||||+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 76 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDER-GFTPLIWASAFGEIETVRFLLE----WGADPHILAKERESALSLA 76 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTT-SCCHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTCCCHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCchhhcccCCCHHHHH
Confidence 5689999999999999999998877778888876 9999999999999999999999 5788999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHH
Q 011578 93 AKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 172 (482)
Q Consensus 93 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~ 172 (482)
+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||+ |...++.+++
T Consensus 77 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~-A~~~~~~~~~ 151 (172)
T 3v30_A 77 STGGYTDIVGLLLERDVDINIYDWNGGTPLLYAV----RGNHVKCVEALLARGADLTTEADSGYTPMDL-AVALGYRKVQ 151 (172)
T ss_dssp HHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHHTCHHHH
T ss_pred HHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCccccCCCCCCHHHH-HHHhCcHHHH
Confidence 9999999999999999999999999999999999 8899999999999999999999999999955 5556788999
Q ss_pred HHHHhhhHHHHHHh
Q 011578 173 ELLLWHSEEQRKRR 186 (482)
Q Consensus 173 ~lL~~~~~~~~~~~ 186 (482)
++|++++++...+.
T Consensus 152 ~~L~~~~~~~~~~~ 165 (172)
T 3v30_A 152 QVIENHILKLFQSN 165 (172)
T ss_dssp HHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHhccc
Confidence 99999998765444
No 14
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=2.8e-30 Score=249.48 Aligned_cols=245 Identities=16% Similarity=0.192 Sum_probs=188.8
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.|.+. +.++..++..... ...++.++||+||||||||++|+++|++++. +|+.++
T Consensus 15 ~~~~di~G~~~~~~~l~~~---i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~-------~~~~v~ 83 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEA---VILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANS-------TFFSVS 83 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHH---THHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTC-------EEEEEE
T ss_pred CCHHHhcChHHHHHHHHHH---HHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCC-------CEEEEc
Confidence 3588999999999999987 4455565555544 3456789999999999999999999999865 899999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-----CcEEEEEecCc
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYS 354 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~~vi~~~~~ 354 (482)
++++.++|+|+++..++.+|..+. ++||||||+|.+.++++....+...+++++|+..|++ ..++||++|+.
T Consensus 84 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 84 SSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp HHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred hHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 999999999999999999998754 4899999999999988765666677888999988863 55777777654
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
... .+|++++||+..+.|+.|+.++|.+|++.++.+.. ..++...+..++.... ..++
T Consensus 164 ~~~-----ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~-----------~~~~~~~l~~la~~t~------g~sg 221 (322)
T 3eie_A 164 PWQ-----LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP-----------CVLTKEDYRTLGAMTE------GYSG 221 (322)
T ss_dssp GGG-----SCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCC-----------CCCCHHHHHHHHHTTT------TCCH
T ss_pred hhh-----CCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCC-----------CCCCHHHHHHHHHHcC------CCCH
Confidence 332 28999999999999999999999999999987643 2345667777776543 5688
Q ss_pred chhHHHHHHHHHHhhhhhcCC----CC------------------------------ChhhhhcccHHHHHHHHHHHHhc
Q 011578 435 GLVDPMLVNARENLDLRLSFD----CL------------------------------DTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 435 ~~l~~~~~~a~~~~~~r~~~~----~~------------------------------~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
++|++++..|...+..+.... .. +......||.+||.+|++.++|.
T Consensus 222 ~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps 301 (322)
T 3eie_A 222 SDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPT 301 (322)
T ss_dssp HHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCC
Confidence 999999998877666554210 00 00012469999999999999885
No 15
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=3.1e-30 Score=224.90 Aligned_cols=160 Identities=24% Similarity=0.334 Sum_probs=147.9
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHH
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~ 91 (482)
.|.||||.||..|+.+.++.|+.. +.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|.||||+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~ 75 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEE-GFTPLMWAAAHGQIAVVEFLLQ----NGADPQLLGKGRESALSL 75 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCC-CCCHHHHHHHCCCHHHHHHHHH----cCCCCCCcCCCCCcHHHH
Confidence 578999999999999999999976 5668888886 9999999999999999999999 578899999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHH
Q 011578 92 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKL 171 (482)
Q Consensus 92 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~ 171 (482)
|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||+|+| ...++.++
T Consensus 76 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A-~~~~~~~~ 150 (167)
T 3v31_A 76 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV----HGNHVKCVKMLLESGADPTIETDSGYNSMDLA-VALGYRSV 150 (167)
T ss_dssp HHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHHTCHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH-HHcCcHHH
Confidence 99999999999999999999999999999999999 88999999999999999999999999999554 55678889
Q ss_pred HHHHHhhhHHH
Q 011578 172 RELLLWHSEEQ 182 (482)
Q Consensus 172 ~~lL~~~~~~~ 182 (482)
+++|.+++++.
T Consensus 151 ~~~L~~~~~~~ 161 (167)
T 3v31_A 151 QQVIESHLLKL 161 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 16
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.96 E-value=1.1e-29 Score=248.05 Aligned_cols=245 Identities=16% Similarity=0.207 Sum_probs=187.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.|.+. +.++...+..+.. ...++.++||+||||||||++|+++|+.++. +|+.++
T Consensus 48 ~~~~di~G~~~~~~~l~~~---v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~-------~~~~v~ 116 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEA---VILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANS-------TFFSVS 116 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHH---THHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTC-------EEEEEE
T ss_pred CCHHHhCCHHHHHHHHHHH---HHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEee
Confidence 4688999999999999987 4445555554443 3456788999999999999999999999865 899999
Q ss_pred cccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-----CcEEEEEecCc
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYS 354 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~~vi~~~~~ 354 (482)
++++.+.|+|+++..++.+|..+ .++||||||+|.+.+.+....++...+++++|+..|++ ..++||++|+.
T Consensus 117 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~ 196 (355)
T 2qp9_X 117 SSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 196 (355)
T ss_dssp HHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESC
T ss_pred HHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCC
Confidence 99999999999999999999876 56999999999999887766677778889999999873 56777777654
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
... .+|++++||+..+.++.|+.++|.+|++.++.+.. ..++...+..++.... ..++
T Consensus 197 ~~~-----ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-----------~~~~~~~l~~la~~t~------G~sg 254 (355)
T 2qp9_X 197 PWQ-----LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP-----------SVLTKEDYRTLGAMTE------GYSG 254 (355)
T ss_dssp GGG-----SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSC-----------BCCCHHHHHHHHHHTT------TCCH
T ss_pred ccc-----CCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCC-----------CCCCHHHHHHHHHHcC------CCCH
Confidence 432 28999999999999999999999999999988643 1345666777776543 5689
Q ss_pred chhHHHHHHHHHHhhhhhcCC--------------------------------CCChh--hhhcccHHHHHHHHHHHHhc
Q 011578 435 GLVDPMLVNARENLDLRLSFD--------------------------------CLDTD--ELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 435 ~~l~~~~~~a~~~~~~r~~~~--------------------------------~~~~~--~~~~i~~~d~~~al~~~~~~ 480 (482)
++|++++.+|...+..+.... ....+ ....|+.+||..|++.++|.
T Consensus 255 ~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps 334 (355)
T 2qp9_X 255 SDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPT 334 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCC
Confidence 999999999988877664210 00001 12469999999999999885
No 17
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=3.3e-30 Score=227.51 Aligned_cols=164 Identities=23% Similarity=0.274 Sum_probs=150.3
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh 90 (482)
..+.++||.||..|+.+.|+.||...+.+++..+.. |+||||+||..|+.+++++|++ .+++++.+|..|+||||
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~ 77 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDH-GFSPLHWACREGRSAVVEMLIM----RGARINVMNRGDDTPLH 77 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCC-CCCHHHHHHHcCcHHHHHHHHH----cCCCCCCcCCCCCCHHH
Confidence 457899999999999999999999888889998886 9999999999999999999999 57889999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChH
Q 011578 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAK 170 (482)
Q Consensus 91 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~ 170 (482)
+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|++++.+|..|.||| +.|...+...
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl-~~A~~~~~~~ 152 (179)
T 3f6q_A 78 LAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYAC----FWGQDQVAEDLVANGALVSICNKYGEMPV-DKAKAPLREL 152 (179)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCSSBCCTTSCCGG-GGSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCcchhccCCCCcH-HHHHHHHHHH
Confidence 999999999999999999999999999999999999 88899999999999999999999999999 5555677889
Q ss_pred HHHHHHhhhHHHHH
Q 011578 171 LRELLLWHSEEQRK 184 (482)
Q Consensus 171 ~~~lL~~~~~~~~~ 184 (482)
++++|.++|++.+.
T Consensus 153 ~~~~L~~~g~~~~~ 166 (179)
T 3f6q_A 153 LRERAEKMGQNLNR 166 (179)
T ss_dssp HHHHHHHTTCCCSC
T ss_pred HHHHHHHhhcCccc
Confidence 99999999887543
No 18
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.7e-30 Score=244.65 Aligned_cols=156 Identities=29% Similarity=0.383 Sum_probs=129.1
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+||..|+.++|+.||. .+.+++..+.. |.||+|+|+..++.+++++|++ .+++++.+|..|+|
T Consensus 81 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~~a~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~----~g~~~n~~d~~g~T 154 (269)
T 4b93_B 81 VTSQDGSSPLHVAALHGRADLIPLLLK-HGANAGARNAD-QAVPLHLACQQGHFQVVKCLLD----SNAKPNKKDLSGNT 154 (269)
T ss_dssp CCCTTSCCHHHHHHHTTCTTHHHHHHH-TTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTCCC
T ss_pred CcCCCCCCHHHHHHHcCcHHHHHHHHh-cCCCcCccCCC-CCCccccccccChHHHHHHHHH----CCCCCCCCCCCCCC
Confidence 345678899999999999998888884 46667777775 8899999999999999999988 57788888888999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+||..|+.+++++|+++|+++|.+|..|+||||+|+ ..|+.++|++|+++|+|++.+|..|+||||+|+. ++
T Consensus 155 pL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~----~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~-~~ 229 (269)
T 4b93_B 155 PLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV----IEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ-NS 229 (269)
T ss_dssp HHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHH----HTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCT-TC
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHh-CC
Confidence 999999999999999999999999999999999999998 7888999999999999999999999999966543 22
Q ss_pred ChHHHHHHH
Q 011578 168 SAKLRELLL 176 (482)
Q Consensus 168 ~~~~~~lL~ 176 (482)
.++++|.
T Consensus 230 --~i~~lL~ 236 (269)
T 4b93_B 230 --KIMELLQ 236 (269)
T ss_dssp --HHHHHTT
T ss_pred --cHHHHHH
Confidence 3455543
No 19
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=3.2e-30 Score=230.23 Aligned_cols=161 Identities=24% Similarity=0.282 Sum_probs=148.3
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+||..|+.+.++.|+.. +.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|.|
T Consensus 30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t 103 (192)
T 2rfm_A 30 YRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIE-GSTALIWAVKNNRLGIAEKLLS----KGSNVNTKDFSGKT 103 (192)
T ss_dssp CCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTSCC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHh-cccccccccc-CccHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCc
Confidence 4577899999999999999999999966 5678888876 9999999999999999999999 57889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|.||+|+ |...+
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~-A~~~~ 178 (192)
T 2rfm_A 104 PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVAS----KYGRSEIVKKLLELGADISARDLTGLTAEAS-ARIFG 178 (192)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHH----HHTCHHHHHHHHHTTCCTTCBCTTSCBHHHH-HHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH-HHHhC
Confidence 999999999999999999999999999999999999999 7889999999999999999999999999955 45567
Q ss_pred ChHHHHHHHhhh
Q 011578 168 SAKLRELLLWHS 179 (482)
Q Consensus 168 ~~~~~~lL~~~~ 179 (482)
+.+++++|++++
T Consensus 179 ~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 179 RQEVIKIFTEVR 190 (192)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHhcc
Confidence 888999988765
No 20
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=8.1e-30 Score=222.80 Aligned_cols=161 Identities=31% Similarity=0.376 Sum_probs=145.0
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
.....+.++||+||..|+.+.|+.|++. +.++|..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|.|
T Consensus 9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t 82 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDAS-GWTPLHLAAFNGHLEIVEVLLK----NGADVNAVDHAGMT 82 (169)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCC
T ss_pred cCCCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCC
Confidence 3455678999999999999999999955 6778888876 9999999999999999999999 57889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|.||||+| ...+
T Consensus 83 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A-~~~~ 157 (169)
T 2y1l_E 83 PLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA----MFGHLEIVEVLLKNGADVNAQDKFGKTAFDIS-IDNG 157 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH-HHhC
Confidence 999999999999999999999999999999999999999 88999999999999999999999999999554 5567
Q ss_pred ChHHHHHHHhhh
Q 011578 168 SAKLRELLLWHS 179 (482)
Q Consensus 168 ~~~~~~lL~~~~ 179 (482)
+.+++++|+++|
T Consensus 158 ~~~~~~~L~~~G 169 (169)
T 2y1l_E 158 NEDLAEILQKLN 169 (169)
T ss_dssp CHHHHHHHHTC-
T ss_pred CHHHHHHHHHcC
Confidence 888999998765
No 21
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=6e-30 Score=221.78 Aligned_cols=159 Identities=24% Similarity=0.312 Sum_probs=144.1
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh 90 (482)
....||||.|+..|+.+.++.|++ .+.+++..+.. |+||||+|+. |+.+++++|++ .+++++.+|..|+||||
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~-g~t~L~~A~~-~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~ 75 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQ-NNVNVNAQNGF-GRTALQVMKL-GNPEIARRLLL----RGANPDLKDRTGFAVIH 75 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCCCTT-SCCHHHHCCS-SCHHHHHHHHH----TTCCTTCCCTTSCCHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHh-CCCCccccCcc-CccHHHHHHc-CcHHHHHHHHH----cCCCCCCCCCCCCCHHH
Confidence 456799999999999999999995 56778888876 9999999999 99999999999 57889999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCC-ccccCCCCCChhhhhhcCCCCh
Q 011578 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD-CSAKDNEGKTPLDHLSNGPGSA 169 (482)
Q Consensus 91 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpl~~~a~~~~~~ 169 (482)
+|+..|+.+++++|+++|++++.+|.+|+||||+|+ ..|+.+++++|+++|++ ++.+|..|+||||+ |...++.
T Consensus 76 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~-A~~~~~~ 150 (162)
T 1ihb_A 76 DAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA----KEGHLRVVEFLVKHTASNVGHRNHKGDTACDL-ARLYGRN 150 (162)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH-HHHTTCH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HcCCHHHHHHHHHccCCCCCCcCCCCCcHHHH-HHHcCCH
Confidence 999999999999999999999999999999999999 88999999999999998 59999999999955 5556788
Q ss_pred HHHHHHHhhhHH
Q 011578 170 KLRELLLWHSEE 181 (482)
Q Consensus 170 ~~~~lL~~~~~~ 181 (482)
+++++|+++|++
T Consensus 151 ~~~~~Ll~~GAd 162 (162)
T 1ihb_A 151 EVVSLMQANGAG 162 (162)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHhCCC
Confidence 999999999874
No 22
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.96 E-value=4e-29 Score=229.97 Aligned_cols=161 Identities=29% Similarity=0.348 Sum_probs=144.9
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCccc-----ccCcCCCC
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL-----EAQNMYGE 86 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-----~~~~~~g~ 86 (482)
.|.||||+||..|+.+.|+.||...+.+++..+.. |+||||+|+..|+.+++++|+++ ++++ +.+|..|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~~~~~~g~ 76 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAM-GETALHIAALYDNLEAAMVLMEA----APELVFEPMTSELYEGQ 76 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHH----CGGGGGCCCCSTTTTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCC-CCCHHHHHHHcCCHHHHHHHHHc----CchhccccccccCCCCc
Confidence 47899999999999999999998778899999886 99999999999999999999994 4554 67788999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCcccccc-------------CCCcceeeehhhccCCChHHHHHHHhhCCCCccccCC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-------------NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN 153 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~-------------~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~ 153 (482)
||||+|+..|+.+++++|+++|++++..+. .|+||||+|+ ..|+.+++++|+++|++++.+|.
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~d~ 152 (232)
T 2rfa_A 77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA----CVGSEEIVRLLIEHGADIRAQDS 152 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHH----HHTCHHHHHHHHHTTCCTTCCCT
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCCCC
Confidence 999999999999999999999999998866 7999999999 78899999999999999999999
Q ss_pred CCCChhhhhhcCCCChHHH----HHHHhhhHHH
Q 011578 154 EGKTPLDHLSNGPGSAKLR----ELLLWHSEEQ 182 (482)
Q Consensus 154 ~g~tpl~~~a~~~~~~~~~----~lL~~~~~~~ 182 (482)
.|+||||+|+. .++.+++ ++|+++|++.
T Consensus 153 ~g~t~L~~A~~-~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 153 LGNTVLHILIL-QPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp TSCCHHHHHHT-CSCHHHHHHHHHHHHHTTCSC
T ss_pred CCCCHHHHHHH-cCChHHHHHHHHHHHhcCCch
Confidence 99999966555 5566655 8888888754
No 23
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.96 E-value=3.9e-29 Score=230.81 Aligned_cols=170 Identities=25% Similarity=0.264 Sum_probs=152.2
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCC--CcccccCcCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND--KVELEAQNMY 84 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~ 84 (482)
...+..|.||||+||..|+.++|+.|+ +.+.+++..+.. |+||||+|+..|+.+++++|++++++. ...++..+..
T Consensus 39 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 116 (236)
T 1ikn_D 39 NFQNNLQQTPLHLAVITNQPEIAEALL-GAGCDPELRDFR-GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN 116 (236)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHCCC-SCCCCSCCCCTT-CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTT
T ss_pred hccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCC
Confidence 345667999999999999999999888 557788888876 999999999999999999999965432 2336788899
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCCCcccccc-CCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhh
Q 011578 85 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 163 (482)
Q Consensus 85 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~-~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a 163 (482)
|.||||+|+..|+.+++++|+++|++++.++. .|+||||+|+ ..|+.+++++|+++|++++.+|..|+||| +.|
T Consensus 117 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl-~~A 191 (236)
T 1ikn_D 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV----DLQNPDLVSLLLKCGADVNRVTYQGYSPY-QLT 191 (236)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH----HTTCHHHHHHHHTTTCCSCCCCTTCCCGG-GGC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCcccCCCCCHH-HHH
Confidence 99999999999999999999999999999998 9999999999 88999999999999999999999999999 555
Q ss_pred cCCCChHHHHHHHhhhHHHH
Q 011578 164 NGPGSAKLRELLLWHSEEQR 183 (482)
Q Consensus 164 ~~~~~~~~~~lL~~~~~~~~ 183 (482)
...++.+++++|+++|++..
T Consensus 192 ~~~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 192 WGRPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp TTSSCHHHHHHHHTTSCGGG
T ss_pred HccCchHHHHHHHHcchhhh
Confidence 66788999999999998754
No 24
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.96 E-value=2.4e-29 Score=238.31 Aligned_cols=175 Identities=25% Similarity=0.288 Sum_probs=149.9
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCC------------
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND------------ 74 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~------------ 74 (482)
...+..|.||||+||..|+.++|+.|+. .+.+++..+.. |+||||+|+..|+.+++++|+++++..
T Consensus 39 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~-g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 116 (282)
T 1oy3_D 39 DLQNDLGQTALHLAAILGEASTVEKLYA-AGAGVLVAERG-GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS 116 (282)
T ss_dssp GCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCTT-SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCC-CCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcc
Confidence 3456788999999999999999998885 56778888876 999999999999999999999865431
Q ss_pred -------------------------------CcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccC-CCcce
Q 011578 75 -------------------------------KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN-GMTPL 122 (482)
Q Consensus 75 -------------------------------~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~-g~tpL 122 (482)
+.+++.+|..|.||||+|+..|+.+++++|+++|++++.++.. |+|||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL 196 (282)
T 1oy3_D 117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196 (282)
T ss_dssp ---------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH
T ss_pred cccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHH
Confidence 2457888999999999999999999999999999999998854 99999
Q ss_pred eeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHhhH
Q 011578 123 HLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRAL 188 (482)
Q Consensus 123 h~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~~~ 188 (482)
|+|+ ..|+.+++++|+++|++++.+|..|+||||+ |...++.+++++|+++|++++.+...
T Consensus 197 ~~A~----~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~-A~~~~~~~~v~~Ll~~ga~~~~~~~~ 257 (282)
T 1oy3_D 197 HLAV----EAQAASVLELLLKAGADPTARMYGGRTPLGS-ALLRPNPILARLLRAHGAPEPEDGGD 257 (282)
T ss_dssp HHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHTSSCHHHHHHHHHTTCCCCCCC--
T ss_pred HHHH----HcCCHHHHHHHHHcCCCCcccccCCCCHHHH-HHHcCCcHHHHHHHHcCCCcCcCCCc
Confidence 9999 8889999999999999999999999999954 55577889999999999986655433
No 25
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=6e-29 Score=213.47 Aligned_cols=151 Identities=28% Similarity=0.397 Sum_probs=137.1
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHH
Q 011578 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A 92 (482)
..++||.|+..|+.+.++.|++.+. +++ .+. .|+||||+|+..|+.+++++|++ .+++++.+|..|+||||+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~-~~~-~~~-~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 74 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGA-PFT-TDW-LGTSPLHLAAQYGHFSTTEVLLR----AGVSRDARTKVDRTPLHMA 74 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTC-CCC-CCT-TCCCHHHHHHHHTCHHHHHHHHT----TTCCTTCCCTTCCCHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCC-CCC-cCC-CCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHH
Confidence 4689999999999999999997754 444 344 49999999999999999999999 5788999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHH
Q 011578 93 AKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 172 (482)
Q Consensus 93 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~ 172 (482)
+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||+| ...++.+++
T Consensus 75 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A-~~~~~~~i~ 149 (153)
T 1awc_B 75 ASEGHANIVEVLLKHGADVNAKDMLKMTALHWAT----EHNHQEVVELLIKYGADVHTQSKFCKTAFDIS-IDNGNEDLA 149 (153)
T ss_dssp HHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHHHH
T ss_pred HHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCccccCCCCCCHHHHH-HHcCCHHHH
Confidence 9999999999999999999999999999999999 88999999999999999999999999999555 456778888
Q ss_pred HHH
Q 011578 173 ELL 175 (482)
Q Consensus 173 ~lL 175 (482)
++|
T Consensus 150 ~~L 152 (153)
T 1awc_B 150 EIL 152 (153)
T ss_dssp HHH
T ss_pred HHh
Confidence 776
No 26
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=5.2e-29 Score=214.49 Aligned_cols=154 Identities=29% Similarity=0.427 Sum_probs=142.1
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHH
Q 011578 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A 92 (482)
+.|+||.||..|+.+.++.|+...+.+++..+.. |+||||+ +..|+.+++++|++ .|++++.+|..|+||||+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~-~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 75 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRF-GKTALQV-MMFGSTAIALELLK----QGASPNVQDTSGTSPVHDA 75 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTT-SCCHHHH-SCTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCC-CCcHHHH-HHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHH
Confidence 4689999999999999999998866688888876 9999999 99999999999999 5788999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHH
Q 011578 93 AKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 172 (482)
Q Consensus 93 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~ 172 (482)
+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++ ++++.+|..|.||||+|+ ..++.+++
T Consensus 76 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~-~~~~~~~v 149 (156)
T 1bd8_A 76 ARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV----QEGHTAVVSFLAAE-SDLHRRDARGLTPLELAL-QRGAQDLV 149 (156)
T ss_dssp HHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH----HHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHH-HSCCHHHH
T ss_pred HHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHH----HhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHH-HcCcHHHH
Confidence 9999999999999999999999999999999999 88899999999999 999999999999995554 56788888
Q ss_pred HHHHhh
Q 011578 173 ELLLWH 178 (482)
Q Consensus 173 ~lL~~~ 178 (482)
++|+++
T Consensus 150 ~~Ll~~ 155 (156)
T 1bd8_A 150 DILQGH 155 (156)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 888754
No 27
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=2.7e-29 Score=235.99 Aligned_cols=252 Identities=18% Similarity=0.231 Sum_probs=175.6
Q ss_pred HHHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEE
Q 011578 201 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (482)
Q Consensus 201 ~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 280 (482)
....|++++|++++|+.|.+. +..+..++.....++...+.+++|+||||||||++++++|.++.. +++.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~---i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-------~~i~ 74 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMA---ILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-------NFIS 74 (274)
T ss_dssp -------CCHHHHHHHHHHHH---HTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-------EEEE
T ss_pred CCCCHHHhCCHHHHHHHHHHH---HHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-------CEEE
Confidence 346799999999999999986 334444444434444556678999999999999999999997754 6899
Q ss_pred eecccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC----cEEEEEecC
Q 011578 281 VQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----KVVVIFAGY 353 (482)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~----~~~vi~~~~ 353 (482)
+++.++...++|++.+.++.+|..+ .++|+|+||+|.+.+.+.....+...+++++++..|+++ .++++++++
T Consensus 75 i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn 154 (274)
T 2x8a_A 75 VKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATN 154 (274)
T ss_dssp EETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEES
T ss_pred EEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecC
Confidence 9999999999999988999999876 458999999999987654322222346778899998763 345555544
Q ss_pred chhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 354 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
..... ||++++ |||..|+++.|+.++|.+|++.+++... ......+++.+.++..+. ...
T Consensus 155 ~p~~L-----D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~------~~~~~~~~~~~~la~~~~-------~~g 216 (274)
T 2x8a_A 155 RPDII-----DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGT------KPPLDADVNLEAIAGDLR-------CDC 216 (274)
T ss_dssp CGGGS-----CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTB------TTBBCTTCCHHHHHTCSG-------GGS
T ss_pred ChhhC-----CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhccc------CCCCccccCHHHHHHhhc-------cCC
Confidence 43332 899987 9999999999999999999999886532 123445666665554432 124
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCCC--CChhhhhcccHHHHHHHHHHHHhc
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFDC--LDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~~--~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
..|++|.+++++|...+..+..... ........|+.+||++|+++++|.
T Consensus 217 ~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps 267 (274)
T 2x8a_A 217 YTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSS 267 (274)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCC
Confidence 6689999999999887766543211 111233479999999999999884
No 28
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=7.1e-29 Score=223.00 Aligned_cols=168 Identities=20% Similarity=0.264 Sum_probs=131.3
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHH
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpL 89 (482)
++.+.||||.||..|+.+.++.+|..++.+++..+.. |+||||+|+..|+.+++++|++ .|++++.+|..|+|||
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l 76 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTE-GNTPLNIAVHNNDIEIAKALID----RGADINLQNSISDSPY 76 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHH
Confidence 3557788888888888888888887777677777775 8888888888888888888888 5677788888888888
Q ss_pred HHHHHcCCHHHHHHHH-hCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCC-CCccccCCCCCChhhhhhcCCC
Q 011578 90 HMAAKNGCNEAAKLLL-AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN-ADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|+|+..|+.+++++|+ ..+++++..|..|+||||+|+ ..|+.+++++|+++| ++++.+|..|+||||+++..+.
T Consensus 77 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 152 (201)
T 3hra_A 77 LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAA----EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE 152 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHH----HTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSC
T ss_pred HHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHH----HcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhcc
Confidence 8888888888888888 566788888888888888888 777888888888887 7888888888888866665443
Q ss_pred ----ChHHHHHHHhhhHHHHHHh
Q 011578 168 ----SAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 168 ----~~~~~~lL~~~~~~~~~~~ 186 (482)
+.+++++|+++|++++.+.
T Consensus 153 ~~~~~~~~v~~Ll~~ga~~~~~~ 175 (201)
T 3hra_A 153 GNQLYQDIVKLLMENGADQSIKD 175 (201)
T ss_dssp CSHHHHHHHHHHHHTTCCTTCCC
T ss_pred chhhHHHHHHHHHHCCCCCCccC
Confidence 2677888888877765443
No 29
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.96 E-value=1.1e-28 Score=225.59 Aligned_cols=167 Identities=23% Similarity=0.273 Sum_probs=149.1
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChH
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tp 88 (482)
.+..|.||||+||..|+.+.++.|++. +.+++..+.. |+||||+|+..|+.+++++|+++ ...+++.++..|.||
T Consensus 21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~ 95 (223)
T 2f8y_A 21 TDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNM-GRTPLHAAVSADAQGVFQILIRN---RATDLDARMHDGTTP 95 (223)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHB---TTSCTTCCCTTCCCH
T ss_pred cCCCCCchHHHHHHcCCHHHHHHHHHc-CCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCcH
Confidence 367899999999999999999999954 6778888876 99999999999999999999995 234788899999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCC
Q 011578 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168 (482)
Q Consensus 89 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~ 168 (482)
||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|.||||+| +..++
T Consensus 96 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~ 170 (223)
T 2f8y_A 96 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA----AVNNVDAAVVLLKNGANKDMQNNREETPLFLA-AREGS 170 (223)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH-HHHTC
T ss_pred HHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHH-HHcCC
Confidence 99999999999999999999999999999999999999 88899999999999999999999999999555 45678
Q ss_pred hHHHHHHHhhhHHHHHH
Q 011578 169 AKLRELLLWHSEEQRKR 185 (482)
Q Consensus 169 ~~~~~lL~~~~~~~~~~ 185 (482)
.+++++|+++|++++.+
T Consensus 171 ~~~v~~Ll~~ga~~~~~ 187 (223)
T 2f8y_A 171 YETAKVLLDHFANRDIT 187 (223)
T ss_dssp HHHHHHHHHTTCCTTCC
T ss_pred HHHHHHHHHcCCCCccc
Confidence 88999999998876644
No 30
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=1.2e-29 Score=242.44 Aligned_cols=244 Identities=17% Similarity=0.274 Sum_probs=184.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|++.+++.+.+++. ++..+++.+...+..++.+++|+||||||||++|+++|+.+.. +|+.+++
T Consensus 13 ~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-------~~i~v~~ 82 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIKG 82 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-------EEEEECH
T ss_pred CHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-------CEEEEEh
Confidence 57899999999999998854 3333333333344557789999999999999999999998754 8999999
Q ss_pred ccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcC----CcEEEEEecC
Q 011578 284 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAGY 353 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~----~~~~vi~~~~ 353 (482)
+++.++|+|+++..++.+|..+. ++||||||+|.+.+.++.. ......+++++|+..|++ ..++||++|+
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn 162 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 162 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEES
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecC
Confidence 99999999999999999998764 4899999999998766432 123344777888888874 4678888866
Q ss_pred chhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 354 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
.... .+|++++ ||+..++|+.|+.++|.+|++.++++.. +..+++.+.++..+. .
T Consensus 163 ~~~~-----ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~---------~~~~~~~~~la~~~~---------g 219 (301)
T 3cf0_A 163 RPDI-----IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP---------VAKDVDLEFLAKMTN---------G 219 (301)
T ss_dssp CGGG-----SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---------BCSSCCHHHHHHTCS---------S
T ss_pred Cccc-----cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC---------CCccchHHHHHHHcC---------C
Confidence 5432 2888888 9999999999999999999999998653 234566666655433 4
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCC-C------------CC---hhhhhcccHHHHHHHHHHHHhc
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFD-C------------LD---TDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~-~------------~~---~~~~~~i~~~d~~~al~~~~~~ 480 (482)
..|++|++++++|...+..+.... . .+ .+....|+.+||.+|+++++|.
T Consensus 220 ~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 284 (301)
T 3cf0_A 220 FSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284 (301)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 557799999999988776553210 0 00 1123579999999999988763
No 31
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.96 E-value=9.3e-29 Score=248.42 Aligned_cols=246 Identities=17% Similarity=0.192 Sum_probs=183.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.|.+. +.++..++..+.. ...++.++||+||||||||++|+++|+++. ..+|+.++
T Consensus 131 ~~~~di~G~~~~k~~l~~~---v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~------~~~~~~v~ 200 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEA---VILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEAN------NSTFFSIS 200 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHH---HTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCC------SSEEEEEC
T ss_pred CCHHHhcCHHHHHHHHHHH---HHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcC------CCCEEEEe
Confidence 4688999999999999987 4445554444332 124668999999999999999999999871 23899999
Q ss_pred cccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-----CcEEEEEecCc
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYS 354 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~~vi~~~~~ 354 (482)
++++.+.|+|+++..++.+|..+ .++||||||||.+.++++....+...+++++|+..|++ ..++||++|+.
T Consensus 201 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 201 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp CC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 99999999999999999998765 45999999999999988776777788999999999975 45778877654
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
... .+|++++||+..+.++.|+.+++..|++.++.+.. ..++...+..++.... ..++
T Consensus 281 ~~~-----ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-----------~~l~~~~l~~la~~t~------G~sg 338 (444)
T 2zan_A 281 PWV-----LDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ-----------NSLTEADFQELGRKTD------GYSG 338 (444)
T ss_dssp GGG-----SCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC-----------EECCHHHHHHHHHHTT------TCCH
T ss_pred ccc-----cCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCC-----------CCCCHHHHHHHHHHcC------CCCH
Confidence 432 38999999999999999999999999999987643 1235566777766543 5688
Q ss_pred chhHHHHHHHHHHhhhhhcCC--------------------------------------CCChh--hhhcccHHHHHHHH
Q 011578 435 GLVDPMLVNARENLDLRLSFD--------------------------------------CLDTD--ELRTITLEDLEAGL 474 (482)
Q Consensus 435 ~~l~~~~~~a~~~~~~r~~~~--------------------------------------~~~~~--~~~~i~~~d~~~al 474 (482)
++|.+++..|...+..++... ....+ ....||.+||..|+
T Consensus 339 adl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~ 418 (444)
T 2zan_A 339 ADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSL 418 (444)
T ss_dssp HHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHH
Confidence 999999999988766554210 00001 12479999999999
Q ss_pred HHHHhc
Q 011578 475 KLLLRL 480 (482)
Q Consensus 475 ~~~~~~ 480 (482)
++++|+
T Consensus 419 ~~~~ps 424 (444)
T 2zan_A 419 SSTKPT 424 (444)
T ss_dssp HTCCCS
T ss_pred HhCCCC
Confidence 999885
No 32
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.96 E-value=7.6e-29 Score=231.44 Aligned_cols=168 Identities=23% Similarity=0.270 Sum_probs=150.4
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChH
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tp 88 (482)
.+..|.||||+||..|+.++|+.|++ .+.+++..+.. |+||||+|+..|+.+++++|+++ ...+++.++..|.||
T Consensus 53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~ 127 (253)
T 1yyh_A 53 TDRTGETALHLAARYSRSDAAKRLLE-ASADANIQDNM-GRTPLHAAVSADAQGVFQILIRN---RATDLDARMHDGTTP 127 (253)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHS---TTSCTTCCCTTCCCH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHc---CCCCccccCCCCCcH
Confidence 46789999999999999999999985 57778888876 99999999999999999999995 234788999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCC
Q 011578 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168 (482)
Q Consensus 89 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~ 168 (482)
||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||+| +..++
T Consensus 128 L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A-~~~~~ 202 (253)
T 1yyh_A 128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA----AVNNVDAAVVLLKNGANKDMQNNREETPLFLA-AREGS 202 (253)
T ss_dssp HHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHH----HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHHTC
T ss_pred HHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH-HHCCC
Confidence 99999999999999999999999999999999999999 78899999999999999999999999999555 45678
Q ss_pred hHHHHHHHhhhHHHHHHh
Q 011578 169 AKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 169 ~~~~~lL~~~~~~~~~~~ 186 (482)
.+++++|+++|++.+.+.
T Consensus 203 ~~~v~~Ll~~ga~~~~~d 220 (253)
T 1yyh_A 203 YETAKVLLDHFANRDITD 220 (253)
T ss_dssp HHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHHHcCCCccccc
Confidence 889999999998766543
No 33
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.96 E-value=2.3e-29 Score=234.99 Aligned_cols=164 Identities=24% Similarity=0.328 Sum_probs=148.8
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+|+..|+.++++.|+..++.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+|
T Consensus 85 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~t 159 (253)
T 1yyh_A 85 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD-GTTPLILAARLAVEGMLEDLIN----SHADVNAVDDLGKS 159 (253)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTT-CCCHHHHHHHHTCSSHHHHHHH----TTCCTTCBCTTSCB
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCC-CCcHHHHHHHcChHHHHHHHHH----cCCCCCCcCCCCCC
Confidence 445779999999999999999999998877788888876 9999999999999999999999 57889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||+ +.|...+
T Consensus 160 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~----~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl-~~A~~~g 234 (253)
T 1yyh_A 160 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA----REGSYETAKVLLDHFANRDITDHMDRLPR-DIAQERM 234 (253)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HHTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HCCCHHHHHHHHHcCCCccccccCCCCHH-HHHHHcC
Confidence 999999999999999999999999999999999999999 88899999999999999999999999999 5555678
Q ss_pred ChHHHHHHHhhhHH
Q 011578 168 SAKLRELLLWHSEE 181 (482)
Q Consensus 168 ~~~~~~lL~~~~~~ 181 (482)
+.+++.+|......
T Consensus 235 ~~~i~~~l~~~~~~ 248 (253)
T 1yyh_A 235 HHDIVRLLDLEHHH 248 (253)
T ss_dssp CHHHHHHHHC----
T ss_pred CHHHHHHHHHHhhh
Confidence 88899888865543
No 34
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.96 E-value=1.8e-28 Score=225.65 Aligned_cols=169 Identities=26% Similarity=0.356 Sum_probs=145.0
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCc----cCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCc
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLL----NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN 82 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~----~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 82 (482)
...+..|.||||+||..|+.++++.|+..++... +..+.. |+||||+|+..|+.+++++|+++ +++++.++
T Consensus 31 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~ 105 (232)
T 2rfa_A 31 HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYE-GQTALHIAVINQNVNLVRALLAR----GASVSARA 105 (232)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTT-TCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCC
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCC-CcCHHHHHHHcCCHHHHHHHHhC----CCCCCccc
Confidence 3456789999999999999999999997755432 444444 99999999999999999999994 66666665
Q ss_pred C-------------CCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHH----HHHhhCC
Q 011578 83 M-------------YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATV----KTLLEYN 145 (482)
Q Consensus 83 ~-------------~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v----~~Ll~~g 145 (482)
. .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++ ++|+++|
T Consensus 106 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~----~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 106 TGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILI----LQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp CSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----TCSCHHHHHHHHHHHHHTT
T ss_pred CCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HcCChHHHHHHHHHHHhcC
Confidence 4 7999999999999999999999999999999999999999999 88899888 9999999
Q ss_pred CCc------cccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHH
Q 011578 146 ADC------SAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 146 ad~------~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
+++ +.+|..|+||||+| ...++.+++++|+++|......
T Consensus 182 ~~~~~~~~~~~~~~~g~tpl~~A-~~~g~~~~v~~Ll~~g~~~~~~ 226 (232)
T 2rfa_A 182 GGDHLKSLELVPNNQGLTPFKLA-GVEGNIVMFQHLMQKRKHIAAA 226 (232)
T ss_dssp CSCSSCCGGGCCCTTSCCHHHHH-HHHTCHHHHHHHHHHHHHC---
T ss_pred CchhhhhhhccCCCCCCCHHHHH-HHcCCHHHHHHHHhcCccchhh
Confidence 998 68999999999555 4567889999999888765443
No 35
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.96 E-value=1.7e-28 Score=225.63 Aligned_cols=169 Identities=28% Similarity=0.365 Sum_probs=153.4
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.||||+||..|+.++++.|++. +.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|.
T Consensus 34 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~ 107 (231)
T 3aji_A 34 TRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDA-GWSPLHIAASAGXDEIVKALLV----KGAHVNAVNQNGC 107 (231)
T ss_dssp GCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSC
T ss_pred hcCCCCCCCHHHHHHHcCcHHHHHHHHHh-CCCCCCcCCC-CCCHHHHHHHcCHHHHHHHHHH----cCCCCCCCCCCCC
Confidence 45578899999999999999999999955 6778888876 9999999999999999999999 5788999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 166 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~ 166 (482)
||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||+|+ ..
T Consensus 108 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~ 182 (231)
T 3aji_A 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAA----AKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC-DE 182 (231)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH-HT
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH----HcCCHHHHHHHHhcCCCccccCCCCCCHHHHHH-HC
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999995554 56
Q ss_pred CChHHHHHHHhhhHHHHHHh
Q 011578 167 GSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 167 ~~~~~~~lL~~~~~~~~~~~ 186 (482)
++.+++++|+++|++++.+.
T Consensus 183 ~~~~~v~~Ll~~ga~~~~~~ 202 (231)
T 3aji_A 183 ERVEEAKFLVTQGASIYIEN 202 (231)
T ss_dssp TCHHHHHHHHHTTCCSCCCC
T ss_pred CCHHHHHHHHHCCCCCCCCC
Confidence 78889999999998765443
No 36
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=2.4e-29 Score=235.13 Aligned_cols=169 Identities=21% Similarity=0.206 Sum_probs=146.5
Q ss_pred CCCCCchHhHHHHHc---CCHHHHHHHHhhCCCCccC-----------CCCCCCChHHHHHHhCCcHHHHHHHHcCCCCC
Q 011578 9 SRSAKPATIHGCAQS---GDLLAFQRLLRENPSLLNE-----------RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND 74 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~---g~~~~v~~ll~~~~~~~~~-----------~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~ 74 (482)
.+..|.||||+||.. |+.++|+.||..+. +++. .+. .|+||||+|+..|+.+++++|++ .
T Consensus 39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~-~~~~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~----~ 112 (256)
T 2etb_A 39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDK-DSGNPKPLVNAQCTDEFY-QGHSALHIAIEKRSLQCVKLLVE----N 112 (256)
T ss_dssp BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHH-HTTCSSCGGGCCCCSTTT-TTCCHHHHHHHTTCHHHHHHHHH----T
T ss_pred CCCCCCCHHHHHHHccccchHHHHHHHHhcCC-cccchhhhcccccccccc-cCCCHHHHHHHcCCHHHHHHHHH----c
Confidence 578899999999999 99999999996533 2321 223 49999999999999999999999 5
Q ss_pred CcccccCcCC-------------CChHHHHHHHcCCHHHHHHHHh---CCCCccccccCCCcceeeehhhccCCChHH--
Q 011578 75 KVELEAQNMY-------------GETPLHMAAKNGCNEAAKLLLA---HGAFIEAKANNGMTPLHLSVWYSIRSEDYA-- 136 (482)
Q Consensus 75 ~~~~~~~~~~-------------g~tpLh~A~~~g~~~~v~~Ll~---~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~-- 136 (482)
|++++.+|.. |.||||+|+..|+.+++++|++ +|++++.+|.+|+||||+|+.. ..++.+
T Consensus 113 ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~--~~~~~~~~ 190 (256)
T 2etb_A 113 GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMI--ADNSPENS 190 (256)
T ss_dssp TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH--CCSCHHHH
T ss_pred CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHc--ccCCchhh
Confidence 7888888876 9999999999999999999999 9999999999999999999932 167888
Q ss_pred -----HHHHHhhCCCCc-------cccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 137 -----TVKTLLEYNADC-------SAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 137 -----~v~~Ll~~gad~-------~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
++++|+++|+++ +.+|..|+||||+| +..++.+++++|+++|.+.....
T Consensus 191 ~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A-~~~g~~~~v~~Ll~~g~~~~~~~ 251 (256)
T 2etb_A 191 ALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA-AKEGKIEIFRHILQREFSGAAAH 251 (256)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHH-HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHH-HHhCCHHHHHHHHhCCCCCCCcc
Confidence 999999999999 99999999999555 45678899999999998766543
No 37
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.95 E-value=1.9e-28 Score=213.54 Aligned_cols=138 Identities=30% Similarity=0.423 Sum_probs=122.7
Q ss_pred cccc-ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC
Q 011578 3 KNQD-RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (482)
Q Consensus 3 ~~~~-~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (482)
.|.| ...+..|.||||+|+..|+.+.++.++. .+.+++..+.. |+||||+||..|+.++|++|++ .|+++|.+
T Consensus 26 ~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~-~gad~~~~d~~-g~TpLh~A~~~g~~~~v~~Ll~----~gadvn~~ 99 (169)
T 4gpm_A 26 NGADVNASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAKDSD-GRTPLHHAAENGHKEVVKLLIS----KGADVNAK 99 (169)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCC
T ss_pred CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cccchhhhccC-CCCHHHHHHHcCCHHHHHHHHH----CcCCCCCC
Confidence 4444 3456789999999999999999999885 57788999886 9999999999999999999999 58899999
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccc
Q 011578 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSA 150 (482)
Q Consensus 82 ~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~ 150 (482)
|..|+||||+||..|+.+++++|+++|++++.+|.+|+||||+|+ ..|+.+++++|+++||+++.
T Consensus 100 d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~----~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 100 DSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR----EHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHTC------
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCcCC
Confidence 999999999999999999999999999999999999999999999 88999999999999999874
No 38
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.95 E-value=1.9e-28 Score=225.18 Aligned_cols=165 Identities=29% Similarity=0.382 Sum_probs=144.9
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh 90 (482)
..+.+|||.||..|+.+.+++++..++..++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+||||
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~ 78 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQD-SRTALHWACSAGHTEIVEFLLQ----LGVPVNDKDDAGWSPLH 78 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCC-CCCHHHHHHHcCcHHHHHHHHH----hCCCCCCcCCCCCCHHH
Confidence 457889999999999999999998888777777776 9999999999999999999998 57788899999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChH
Q 011578 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAK 170 (482)
Q Consensus 91 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~ 170 (482)
+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|++++.+|..|.||||+|+. .++.+
T Consensus 79 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~ 153 (231)
T 3aji_A 79 IAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA----SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA-KGNLK 153 (231)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-HTCHH
T ss_pred HHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH-cCCHH
Confidence 999999999999999999999999999999999999 7889999999999999999999999999955554 56788
Q ss_pred HHHHHHhhhHHHHHH
Q 011578 171 LRELLLWHSEEQRKR 185 (482)
Q Consensus 171 ~~~lL~~~~~~~~~~ 185 (482)
++++|+.+|++.+.+
T Consensus 154 ~v~~Ll~~g~~~~~~ 168 (231)
T 3aji_A 154 MVHILLFYKASTNIQ 168 (231)
T ss_dssp HHHHHHHTTCCSCCC
T ss_pred HHHHHHhcCCCcccc
Confidence 888888888765543
No 39
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.95 E-value=1.4e-28 Score=224.80 Aligned_cols=164 Identities=25% Similarity=0.305 Sum_probs=152.4
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+|+..|+.++++.|+..++.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+|
T Consensus 53 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t 127 (223)
T 2f8y_A 53 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD-GTTPLILAARLAVEGMLEDLIN----SHADVNAVDDLGKS 127 (223)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHH----TTCCTTCBCTTSCB
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC-CCcHHHHHHHhCcHHHHHHHHH----cCCCCcCcCCCCCc
Confidence 455789999999999999999999998877788888876 9999999999999999999999 57889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|.||+|+ |...+
T Consensus 128 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~-A~~~~ 202 (223)
T 2f8y_A 128 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA----REGSYETAKVLLDHFANRDITDHMDRLPRDI-AQERM 202 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH----HHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH-HHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHH----HcCCHHHHHHHHHcCCCCccccccCCCHHHH-HHHhc
Confidence 999999999999999999999999999999999999999 8889999999999999999999999999954 55577
Q ss_pred ChHHHHHHHhhhHH
Q 011578 168 SAKLRELLLWHSEE 181 (482)
Q Consensus 168 ~~~~~~lL~~~~~~ 181 (482)
+.+++++|+++|+.
T Consensus 203 ~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 203 HHDIVRLLDEYNLV 216 (223)
T ss_dssp CHHHHHHHHHTTCS
T ss_pred chHHHHHHHHcCCC
Confidence 88999999998875
No 40
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.95 E-value=1.2e-28 Score=221.41 Aligned_cols=163 Identities=26% Similarity=0.364 Sum_probs=147.1
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.||||+||..|+.++++.|++ .+.+++..+.. |+||||+|+..|+.+++++|+++ .+.+++.+|..|.
T Consensus 33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~ 107 (201)
T 3hra_A 33 DEVDTEGNTPLNIAVHNNDIEIAKALID-RGADINLQNSI-SDSPYLYAGAQGRTEILAYMLKH---ATPDLNKHNRYGG 107 (201)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHH---SCCCTTCCCTTSC
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHhc---cCcccccccCCCC
Confidence 3456789999999999999999999995 57788888876 99999999999999999999954 5778999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCC-CCccccccCCCcceeeehhhccCCCh-----HHHHHHHhhCCCCccccCCCCCChhh
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHG-AFIEAKANNGMTPLHLSVWYSIRSED-----YATVKTLLEYNADCSAKDNEGKTPLD 160 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpLh~A~~~~~~~~~-----~~~v~~Ll~~gad~~~~d~~g~tpl~ 160 (482)
||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+ ..++ .+++++|+++|++++.+|..|+||||
T Consensus 108 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~----~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~ 183 (201)
T 3hra_A 108 NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV----GLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMD 183 (201)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHH----HSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHH----HhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHH
Confidence 9999999999999999999999 999999999999999999 5554 99999999999999999999999995
Q ss_pred hhhcCCCChHHHHHHHhhh
Q 011578 161 HLSNGPGSAKLRELLLWHS 179 (482)
Q Consensus 161 ~~a~~~~~~~~~~lL~~~~ 179 (482)
+ |...++.+++++|+++|
T Consensus 184 ~-A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 184 Y-ANQKGYTEISKILAQYN 201 (201)
T ss_dssp H-HHHHTCHHHHHHHHTCC
T ss_pred H-HHHcCCHhHHHHHHhcC
Confidence 5 45567888999998765
No 41
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.95 E-value=8.7e-29 Score=219.33 Aligned_cols=162 Identities=17% Similarity=0.150 Sum_probs=138.0
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcH----HHHHHHHcCCCCCCcccccCcCCCChH
Q 011578 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKA----EIVKSLLEWPGNDKVELEAQNMYGETP 88 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~~~g~tp 88 (482)
++++||.||..|+.+.++.++..+. +..++..|+||||+|+..|+. +++++|++ .|+++|.+|..|+||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~g~Tp 78 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLIN----KGADIKSRTKEGTTL 78 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH----TTCCSSCCCTTCCCT
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHH----CCCCCCCCCCCCCcH
Confidence 5689999999999999999997653 334422499999999999975 59999999 689999999999999
Q ss_pred HHHHHHcCC------HHHHHHHHhCCCCccccccCCC-cceeeehhhccC-CChHHHHHHHhh-CCCCccccCCCCCChh
Q 011578 89 LHMAAKNGC------NEAAKLLLAHGAFIEAKANNGM-TPLHLSVWYSIR-SEDYATVKTLLE-YNADCSAKDNEGKTPL 159 (482)
Q Consensus 89 Lh~A~~~g~------~~~v~~Ll~~ga~~~~~d~~g~-tpLh~A~~~~~~-~~~~~~v~~Ll~-~gad~~~~d~~g~tpl 159 (482)
||+|+..|+ .+++++|+++|+++|.+|..|+ ||||+|+..+.. .++.+++++|++ +|+|++.+|..|+|||
T Consensus 79 Lh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL 158 (186)
T 3t8k_A 79 FFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH
Confidence 999999987 6889999999999999999999 999999932211 345679999999 9999999999999999
Q ss_pred hhhhcCCCChHHHHHHHhhhHHH
Q 011578 160 DHLSNGPGSAKLRELLLWHSEEQ 182 (482)
Q Consensus 160 ~~~a~~~~~~~~~~lL~~~~~~~ 182 (482)
| .|...++.+++++|..+....
T Consensus 159 ~-~A~~~~~~~~v~~L~~~~~~~ 180 (186)
T 3t8k_A 159 E-FVKRCQKPIALKMMEDYIKKY 180 (186)
T ss_dssp H-HHHTTTCHHHHHHHHHHHHHH
T ss_pred H-HHHHcCCHHHHHHHHHHHHHH
Confidence 5 555678888999999776543
No 42
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.95 E-value=1.9e-28 Score=226.54 Aligned_cols=171 Identities=24% Similarity=0.326 Sum_probs=125.7
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChH
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tp 88 (482)
.+..|.||||+|+..|+.++++.|++ .+.+++..+.. |+||||+|+..|+.+++++|++++...+.+++..|..|.||
T Consensus 42 ~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~ 119 (241)
T 1k1a_A 42 YNNLRQTPLHLAVITTLPSVVRLLVT-AGASPMALDRH-GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119 (241)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH
T ss_pred ccccCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcH
Confidence 34557777777777777777777664 45556666654 77777777777777777777775444444777777788888
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCccccc-cCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 89 LHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 89 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
||+|+..|+.+++++|+++|++++..+ ..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||+|+ ..+
T Consensus 120 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~ 194 (241)
T 1k1a_A 120 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV----ENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS-GRG 194 (241)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH-HHT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH-HcC
Confidence 888888888888888888888888777 67888888888 777888888888888888888888888884444 456
Q ss_pred ChHHHHHHHhhhHHHHHHh
Q 011578 168 SAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 168 ~~~~~~lL~~~~~~~~~~~ 186 (482)
+.+++++|+++|++++.+.
T Consensus 195 ~~~~v~~Ll~~ga~~~~~~ 213 (241)
T 1k1a_A 195 LLPLVRTLVRSGADSSLKN 213 (241)
T ss_dssp CHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHHhcCCCCCCcC
Confidence 6777778887777765443
No 43
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.95 E-value=2.2e-28 Score=224.24 Aligned_cols=170 Identities=23% Similarity=0.255 Sum_probs=147.0
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCC-CCccC-CCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENP-SLLNE-RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~-~~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
.+..|.||||+|+..|+.++++.|+..++ .+++. .+.. |+||||+|+..|+.+++++|++++. +++++.++..|.
T Consensus 32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~--~~~~~~~~~~g~ 108 (228)
T 2dzn_A 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDS-GWTPFHIACSVGNLEVVKSLYDRPL--KPDLNKITNQGV 108 (228)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTT-SCCHHHHHHHHCCHHHHHHHHSSSS--CCCTTCCCTTCC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCC-CCCHHHHHHHcCCHHHHHHHHhCCC--CcccccCCcCCC
Confidence 67789999999999999999999997652 44454 5554 9999999999999999999999431 278899999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCC-CCccccCCCCCChhhhhhcC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN-ADCSAKDNEGKTPLDHLSNG 165 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpl~~~a~~ 165 (482)
||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++| ++++.+|..|+||||+|+.
T Consensus 109 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~- 183 (228)
T 2dzn_A 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA----SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA- 183 (228)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH----HTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH-
T ss_pred CHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHH----HcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHH-
Confidence 9999999999999999999999999999999999999999 888999999999999 9999999999999955554
Q ss_pred CCChHHHHHHH-hhhHHHHHHh
Q 011578 166 PGSAKLRELLL-WHSEEQRKRR 186 (482)
Q Consensus 166 ~~~~~~~~lL~-~~~~~~~~~~ 186 (482)
.++.+++++|+ ++|++.+.+.
T Consensus 184 ~~~~~~v~~Ll~~~ga~~~~~~ 205 (228)
T 2dzn_A 184 EGHGDAAVLLVEKYGAEYDLVD 205 (228)
T ss_dssp TTCHHHHHHHHHHHCCCSCCBC
T ss_pred cCCHHHHHHHHHhcCCCCCccC
Confidence 56777888888 8888766544
No 44
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.8e-29 Score=236.28 Aligned_cols=167 Identities=24% Similarity=0.278 Sum_probs=131.1
Q ss_pred CCCCCchHhHHHHHcCCHH-HHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 9 SRSAKPATIHGCAQSGDLL-AFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~-~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
.+..+.||||+|+..++.+ .++.|+ ..|.++|..+.. |+||||+||..|+.++|++|++ .+++++.++..|.|
T Consensus 48 ~~~~~~t~L~~a~~~~~~~~~v~~Ll-~~Gadvn~~d~~-G~TpLh~A~~~g~~~~v~~Ll~----~~a~~~~~~~~g~t 121 (269)
T 4b93_B 48 ADPEFCHPLCQCPKCAPAQKRLAKVP-ASGLGVNVTSQD-GSSPLHVAALHGRADLIPLLLK----HGANAGARNADQAV 121 (269)
T ss_dssp ----------------------------CCCCTTCCCTT-SCCHHHHHHHTTCTTHHHHHHH----TTCCTTCCCTTCCC
T ss_pred cCccCCCHHHHHHHhCCHHHHHHHHH-HCCCCCCCcCCC-CCCHHHHHHHcCcHHHHHHHHh----cCCCcCccCCCCCC
Confidence 4456889999999988876 455555 678889999987 9999999999999999999999 67889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..++.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|+|+|.+|..|+||||+|+ ..+
T Consensus 122 ~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~----~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~-~~g 196 (269)
T 4b93_B 122 PLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYAC----SGGHHELVALLLQHGASINASNNKGNTALHEAV-IEK 196 (269)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHH----HTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHH-HTT
T ss_pred ccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HCCCHHHHHHHHHCCCCCCccccCCCcHHHHHH-HcC
Confidence 999999999999999999999999999999999999999 889999999999999999999999999995555 567
Q ss_pred ChHHHHHHHhhhHHHHHHh
Q 011578 168 SAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 168 ~~~~~~lL~~~~~~~~~~~ 186 (482)
+.+++++|+++|++++.+.
T Consensus 197 ~~~~v~~Ll~~Gad~~~~d 215 (269)
T 4b93_B 197 HVFVVELLLLHGASVQVLN 215 (269)
T ss_dssp CHHHHHHHHHTTCCSCCCC
T ss_pred CHHHHHHHHHCCCCCCCcC
Confidence 8899999999998876554
No 45
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=1.8e-28 Score=231.88 Aligned_cols=162 Identities=21% Similarity=0.252 Sum_probs=147.4
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHH-----hCCcHHHHHHHHcCCCCCCcccccCc
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSA-----GYNKAEIVKSLLEWPGNDKVELEAQN 82 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~-----~~g~~~~v~~Ll~~~~~~~~~~~~~~ 82 (482)
..+..|.||||+||..|+.++|+.||..+..+++..+.. |+||||+|+ ..++.+++++|++ .+.+++..+
T Consensus 106 ~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-g~tpL~~a~~~~~~~~~~~~~v~~Ll~----~g~~~~~~~ 180 (276)
T 4hbd_A 106 IADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRA-GYSPIMLTALATLKTQDDIETVLQLFR----LGNINAKAS 180 (276)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTT-SCCHHHHGGGCCCCSHHHHHHHHHHHH----HSCTTCCCT
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCC-CCCHHHHHHHHHhhhhhhHHHHHHHHH----cCCCccccC
Confidence 457789999999999999999999998777689998886 999999999 6689999999999 567788889
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhh-CCCCccccCCCCCChhhh
Q 011578 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDH 161 (482)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpl~~ 161 (482)
..|+||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+ ..|+.+++++|++ .|+|++.+|..|+||||+
T Consensus 181 ~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~----~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~ 256 (276)
T 4hbd_A 181 QAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCAC----EHGHKEIAGLLLAVPSCDISLTDRDGSTALMV 256 (276)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH----HCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999 7889999999999 899999999999999955
Q ss_pred hhcCCCChHHHHHHHhhh
Q 011578 162 LSNGPGSAKLRELLLWHS 179 (482)
Q Consensus 162 ~a~~~~~~~~~~lL~~~~ 179 (482)
|+ ..++.+++++|+++.
T Consensus 257 A~-~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 257 AL-DAGQSEIASMLYSRM 273 (276)
T ss_dssp HH-HHTCHHHHHHHHHHC
T ss_pred HH-HcCCHHHHHHHHhcc
Confidence 55 467788888887654
No 46
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.95 E-value=1e-28 Score=233.88 Aligned_cols=169 Identities=26% Similarity=0.304 Sum_probs=150.6
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCC--CccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCC
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPS--LLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG 85 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~--~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g 85 (482)
..+..|.||||+||..|+.++|+.||..+.. .++..+.. |+||||+||..|+.+++++|++ .|++++.+|..|
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g 78 (282)
T 1oy3_D 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL-GQTALHLAAILGEASTVEKLYA----AGAGVLVAERGG 78 (282)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCSSCCCTTS
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCC
Confidence 4578899999999999999999999976443 37788776 9999999999999999999999 578899999999
Q ss_pred ChHHHHHHHcCCHHHHHHHHhCCCC-----------------------------------------------ccccccCC
Q 011578 86 ETPLHMAAKNGCNEAAKLLLAHGAF-----------------------------------------------IEAKANNG 118 (482)
Q Consensus 86 ~tpLh~A~~~g~~~~v~~Ll~~ga~-----------------------------------------------~~~~d~~g 118 (482)
+||||+|+..|+.+++++|+++|++ ++.+|..|
T Consensus 79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 158 (282)
T 1oy3_D 79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG 158 (282)
T ss_dssp CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence 9999999999999999999998865 77888999
Q ss_pred CcceeeehhhccCCChHHHHHHHhhCCCCccccCCC-CCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 119 MTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNE-GKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 119 ~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~-g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
+||||+|+ ..|+.+++++|+++|++++.++.. |+||||+|+ ..++.+++++|+++|++++.+.
T Consensus 159 ~t~L~~A~----~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~-~~~~~~~v~~Ll~~gad~~~~d 222 (282)
T 1oy3_D 159 HTPLHVAV----IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV-EAQAASVLELLLKAGADPTARM 222 (282)
T ss_dssp CCHHHHHH----HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCC
T ss_pred cCHHHHHH----HcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHH-HcCCHHHHHHHHHcCCCCcccc
Confidence 99999999 889999999999999999999865 999995555 4678899999999998876544
No 47
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.95 E-value=3e-28 Score=228.47 Aligned_cols=160 Identities=23% Similarity=0.269 Sum_probs=143.7
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHH
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~ 91 (482)
+|+||||+||..|+.+.|+.|+.. +.++|..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~ 75 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITAD-HVSPLHEACLGGHLSCVKILLK----HGAQVNGVTADWHTPLFN 75 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTT-CCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHH
Confidence 589999999999999999999965 6778888886 9999999999999999999999 578899999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHH
Q 011578 92 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKL 171 (482)
Q Consensus 92 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~ 171 (482)
|+..|+.+++++|+++|++++. +.+|+||||+|+ ..|+.+++++|+++|++++.+|..|.||||+|+ ..++.++
T Consensus 76 A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~~ 149 (261)
T 2xai_A 76 ACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAA----RRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC-ENQQRAC 149 (261)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHH-HTTCHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHH----HcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHH-HhCCHHH
Confidence 9999999999999999999986 456999999999 888999999999999999999999999995555 5678889
Q ss_pred HHHHHhhhHHHH
Q 011578 172 RELLLWHSEEQR 183 (482)
Q Consensus 172 ~~lL~~~~~~~~ 183 (482)
+++|+++|++.+
T Consensus 150 v~~Ll~~g~~~~ 161 (261)
T 2xai_A 150 VKKLLESGADVN 161 (261)
T ss_dssp HHHHHHHTCCTT
T ss_pred HHHHHHcCCCCC
Confidence 999998888765
No 48
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.95 E-value=1e-28 Score=231.38 Aligned_cols=167 Identities=22% Similarity=0.210 Sum_probs=143.2
Q ss_pred CCCCchHhHHHH---HcCCHHHHHHHHhhCC----------CCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCc
Q 011578 10 RSAKPATIHGCA---QSGDLLAFQRLLRENP----------SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV 76 (482)
Q Consensus 10 ~~~~~t~l~~a~---~~g~~~~v~~ll~~~~----------~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~ 76 (482)
+..|.||||+|+ ..|+.++|+.||..+. ...+..+.. |+||||+||..|+.++|++|++ .|+
T Consensus 43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga 117 (260)
T 3jxi_A 43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYR-GQTALHIAIERRCKHYVELLVE----KGA 117 (260)
T ss_dssp TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEE-SBCHHHHHHHTTCHHHHHHHHH----TTC
T ss_pred cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccC-CCCHHHHHHHcCCHHHHHHHHh----CCC
Confidence 367999999999 7799999999997542 223334434 9999999999999999999999 578
Q ss_pred ccccCc--------------CCCChHHHHHHHcCCHHHHHHHHh---CCCCccccccCCCcceeeehhhccCCCh-----
Q 011578 77 ELEAQN--------------MYGETPLHMAAKNGCNEAAKLLLA---HGAFIEAKANNGMTPLHLSVWYSIRSED----- 134 (482)
Q Consensus 77 ~~~~~~--------------~~g~tpLh~A~~~g~~~~v~~Ll~---~ga~~~~~d~~g~tpLh~A~~~~~~~~~----- 134 (482)
+++.++ ..|+||||+|+..|+.+++++|++ +|++++.+|.+|+||||+|+. .++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~----~~~~~~~~ 193 (260)
T 3jxi_A 118 DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVA----IADNTREN 193 (260)
T ss_dssp CTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH----HCCSSHHH
T ss_pred CcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHH----hccCchhH
Confidence 888888 689999999999999999999999 999999999999999999994 334
Q ss_pred ----HHHHHHHhhCCCCc-------cccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 135 ----YATVKTLLEYNADC-------SAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 135 ----~~~v~~Ll~~gad~-------~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
.+++++|+++|+++ +.+|..|+||||+| +..++.+++++|+++|.+.....
T Consensus 194 ~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A-~~~g~~~~v~~Ll~~g~~~~~~~ 255 (260)
T 3jxi_A 194 TKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMA-AKTGKIGIFQHIIRREIADAAAH 255 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH-HHTTCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHH-HHcCCHHHHHHHHHhCCCccccc
Confidence 69999999999999 78999999999555 55678899999999988766543
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.95 E-value=2.9e-28 Score=230.09 Aligned_cols=169 Identities=24% Similarity=0.275 Sum_probs=141.6
Q ss_pred cCCCCCchHhHHHHHc---CCHHHHHHHHhhCCCC------ccC----CCCCCCChHHHHHHhCCcHHHHHHHHcCCCCC
Q 011578 8 RSRSAKPATIHGCAQS---GDLLAFQRLLRENPSL------LNE----RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGND 74 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~---g~~~~v~~ll~~~~~~------~~~----~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~ 74 (482)
..+..|.||||+||.. |+.++|+.||..+... +|. .+.. |+||||+|+..|+.++|++|++ .
T Consensus 49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~-g~tpL~~A~~~g~~~~v~~Ll~----~ 123 (273)
T 2pnn_A 49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYK-GQTALHIAIERRNMTLVTLLVE----N 123 (273)
T ss_dssp SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTT-TCCHHHHHHHTTCHHHHHHHHH----T
T ss_pred ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCC-CCCHHHHHHHcCCHHHHHHHHH----C
Confidence 3467899999999987 9999999999764211 222 3334 9999999999999999999999 5
Q ss_pred CcccccCcC--------------CCChHHHHHHHcCCHHHHHHHHh---CCCCccccccCCCcceeeehhhccCCCh---
Q 011578 75 KVELEAQNM--------------YGETPLHMAAKNGCNEAAKLLLA---HGAFIEAKANNGMTPLHLSVWYSIRSED--- 134 (482)
Q Consensus 75 ~~~~~~~~~--------------~g~tpLh~A~~~g~~~~v~~Ll~---~ga~~~~~d~~g~tpLh~A~~~~~~~~~--- 134 (482)
|++++.++. .|.||||+|+..|+.+++++|++ +|++++.+|.+|+||||+|+ ..++
T Consensus 124 ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~----~~~~~~~ 199 (273)
T 2pnn_A 124 GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALV----EVADNTV 199 (273)
T ss_dssp TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHH----HHCCSCH
T ss_pred CCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHH----HccCcch
Confidence 788888886 79999999999999999999999 99999999999999999999 5455
Q ss_pred ------HHHHHHHhhCCCCcc-------ccCCCCCChhhhhhcCCCChHHHHHHHhhhH-HHHHHh
Q 011578 135 ------YATVKTLLEYNADCS-------AKDNEGKTPLDHLSNGPGSAKLRELLLWHSE-EQRKRR 186 (482)
Q Consensus 135 ------~~~v~~Ll~~gad~~-------~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~-~~~~~~ 186 (482)
.+++++|+++|++++ .+|..|+||||+| +..++.+++++|+++|+ ++....
T Consensus 200 ~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A-~~~g~~~iv~~Ll~~ga~dp~~~~ 264 (273)
T 2pnn_A 200 DNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA-ASSGKIGVLAYILQREIHEPECRH 264 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH-HHTTCHHHHHHHHHHHTC------
T ss_pred hHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH-HHhChHHHHHHHHHCCCCCchhhh
Confidence 789999999999997 5899999999555 55678899999999998 555443
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.95 E-value=2.1e-28 Score=228.80 Aligned_cols=161 Identities=23% Similarity=0.267 Sum_probs=140.3
Q ss_pred CchHhHHHHHcCCHHHHHHHHh---hCCCCccC----CCCCCCChHHHHHHhC---CcHHHHHHHHcCCCCCCcccc---
Q 011578 13 KPATIHGCAQSGDLLAFQRLLR---ENPSLLNE----RNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELE--- 79 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~---~~~~~~~~----~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~--- 79 (482)
|.||||.||..|+.+.|+.+++ ..+.+++. .+.. |+||||+|+.. |+.+++++|+++ +++++
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~-g~t~L~~A~~~~~~g~~~~v~~Ll~~----g~~~~~~~ 76 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGST-GKTCLMKAVLNLQDGVNACIMPLLQI----DKDSGNPK 76 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTT-TBCHHHHHHHTCBTTBCTTHHHHHHH----HHHTTCSS
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCC-CCCHHHHHHHccccchHHHHHHHHhc----CCcccchh
Confidence 7899999999999985544433 45777887 6665 99999999999 999999999994 45444
Q ss_pred --------cCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccC-------------CCcceeeehhhccCCChHHHH
Q 011578 80 --------AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN-------------GMTPLHLSVWYSIRSEDYATV 138 (482)
Q Consensus 80 --------~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~-------------g~tpLh~A~~~~~~~~~~~~v 138 (482)
.+|..|+||||+|+..|+.+++++|+++|++++.+|.. |+||||+|+ ..|+.+++
T Consensus 77 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~----~~~~~~~v 152 (256)
T 2etb_A 77 PLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA----CTKQWDVV 152 (256)
T ss_dssp CGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHH----HTTCHHHH
T ss_pred hhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHH----HcCCHHHH
Confidence 23478999999999999999999999999999999886 999999999 88999999
Q ss_pred HHHhh---CCCCccccCCCCCChhhhhhc-CCCChH-------HHHHHHhhhHHH
Q 011578 139 KTLLE---YNADCSAKDNEGKTPLDHLSN-GPGSAK-------LRELLLWHSEEQ 182 (482)
Q Consensus 139 ~~Ll~---~gad~~~~d~~g~tpl~~~a~-~~~~~~-------~~~lL~~~~~~~ 182 (482)
++|++ +|++++.+|..|+||||+|+. ..++.+ ++++|+++|++.
T Consensus 153 ~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~ 207 (256)
T 2etb_A 153 TYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL 207 (256)
T ss_dssp HHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence 99999 999999999999999977775 256666 999999999987
No 51
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.95 E-value=2.7e-28 Score=233.31 Aligned_cols=167 Identities=26% Similarity=0.305 Sum_probs=145.9
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHH
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpL 89 (482)
...+.||||.||..|+.+.|+.||.. +.++|..+.. |+||||+||..|+.+++++|++ .|++++.+|..|+|||
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~tpL 110 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLER-GADINYANVD-GLTALHQACIDDNVDMVKFLVE----NGANINQPDNEGWIPL 110 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTT-CCBHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHc-CCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCcHH
Confidence 34678999999999999999999965 5678888876 9999999999999999999999 5788999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCccccccCCC--------------------------------------------------
Q 011578 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGM-------------------------------------------------- 119 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~-------------------------------------------------- 119 (482)
|+|+..|+.+++++|+++|++++..|..|.
T Consensus 111 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (299)
T 1s70_B 111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI 190 (299)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCc
Confidence 999999999999999999999988776555
Q ss_pred ----------cceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHhh
Q 011578 120 ----------TPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRA 187 (482)
Q Consensus 120 ----------tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~~ 187 (482)
||||+|+ ..|+.+++++|+++|++++.+|..|+||||+| +..++.+++++|+++|++++.+..
T Consensus 191 ~~~~~~~~g~t~L~~A~----~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A-~~~~~~~~v~~Ll~~gad~~~~d~ 263 (299)
T 1s70_B 191 NDVRHAKSGGTALHVAA----AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAA-AHWGKEEACRILVENLCDMEAVNK 263 (299)
T ss_dssp CCCCCTTTCCCHHHHHH----HHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHH-HHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred chhhhcCCCCCHHHHHH----HCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHH-HhcCCHHHHHHHHHcCCCCCCcCC
Confidence 5555555 56789999999999999999999999999555 456788899999999988765543
No 52
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.95 E-value=2.1e-27 Score=219.17 Aligned_cols=168 Identities=22% Similarity=0.267 Sum_probs=151.2
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||.|+..|+.++++.|+. .+.+++..+.. |.||||+|+..|+.+++++|+++ ...+++..+..|.|
T Consensus 39 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t 113 (237)
T 3b7b_A 39 TCSEDQRTPLMEAAENNHLEAVKYLIK-AGALVDPKDAE-GSTCLHLAAKKGHYEVVQYLLSN---GQMDVNCQDDGGWT 113 (237)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCCCCCCTT-SCCHHHHHHHTTCHHHHHHHHTT---TCCCTTCCCTTSCC
T ss_pred ccCCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHhC---CCCCcccCCCCCCC
Confidence 345679999999999999999999884 56778888876 99999999999999999999995 23788999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.+++++|+++|++++.+|..|.||||+|+ ..|+.+++++|+++|++++.+|..|.||||+|+ ..+
T Consensus 114 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~ 188 (237)
T 3b7b_A 114 PMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAA----FSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA-REN 188 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH-HTT
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH----HCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH-HhC
Confidence 999999999999999999999999999999999999999 788999999999999999999999999995554 567
Q ss_pred ChHHHHHHHhhhHHHHHH
Q 011578 168 SAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 168 ~~~~~~lL~~~~~~~~~~ 185 (482)
+.+++++|+++|++.+.+
T Consensus 189 ~~~~v~~Ll~~gad~~~~ 206 (237)
T 3b7b_A 189 RYDCVVLFLSRDSDVTLK 206 (237)
T ss_dssp CHHHHHHHHTTTCCTTCC
T ss_pred CHhHHHHHHHcCCCCCcc
Confidence 888999999999876544
No 53
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.95 E-value=4.2e-28 Score=227.50 Aligned_cols=168 Identities=25% Similarity=0.311 Sum_probs=147.9
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.||||+||..|+.++++.|++. +.+++..+.. |+||||+|+..|+.+++++|+++ +++++. +..|.
T Consensus 30 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~-~~~g~ 102 (261)
T 2xai_A 30 NIITADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTAD-WHTPLFNACVSGSWDCVNLLLQH----GASVQP-ESDLA 102 (261)
T ss_dssp SCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHT----TCCSSC-SCTTC
T ss_pred CCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHC----CCCCCC-CCCCC
Confidence 34556899999999999999999999954 7888888876 99999999999999999999994 566664 44699
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 166 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~ 166 (482)
||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++. |..|+||||+|+ ..
T Consensus 103 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~-~~ 176 (261)
T 2xai_A 103 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC----ENQQRACVKKLLESGADVNQ-GKGQDSPLHAVA-RT 176 (261)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHH----HTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHH-HH
T ss_pred CHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHH----HhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHH-Hc
Confidence 9999999999999999999999999999999999999999 88999999999999999995 889999995555 56
Q ss_pred CChHHHHHHHhhhHHHHHHhh
Q 011578 167 GSAKLRELLLWHSEEQRKRRA 187 (482)
Q Consensus 167 ~~~~~~~lL~~~~~~~~~~~~ 187 (482)
++.+++++|+++|++++.+..
T Consensus 177 ~~~~~v~~Ll~~gad~~~~d~ 197 (261)
T 2xai_A 177 ASEELACLLMDFGADTQAKNA 197 (261)
T ss_dssp TCHHHHHHHHHTTCCTTCCCT
T ss_pred CCHHHHHHHHHcCCCCCCcCC
Confidence 788899999999988765543
No 54
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.95 E-value=9.8e-28 Score=221.36 Aligned_cols=167 Identities=25% Similarity=0.342 Sum_probs=151.7
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+||..|+.+.++.|++. +.+++..+.. |+||||+|+..|+.+++++|++ .+++++.++..|.|
T Consensus 6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t 79 (237)
T 3b7b_A 6 MEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSED-QRTPLMEAAENNHLEAVKYLIK----AGALVDPKDAEGST 79 (237)
T ss_dssp CSSCCSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHT----TTCCCCCCCTTSCC
T ss_pred cccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCcCccCCC-CCCHHHHHHHhCCHHHHHHHHh----CCCCCCCCCCCCCc
Confidence 4567899999999999999999999854 6778888876 9999999999999999999999 57889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCC-CCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 166 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~ 166 (482)
|||+|+..|+.+++++|+++| ++++..+..|+||||+|+ ..++.+++++|+++|++++.+|..|.||||+|+ ..
T Consensus 80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~-~~ 154 (237)
T 3b7b_A 80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT----EYKHVDLVKLLLSKGSDINIRDNEENICLHWAA-FS 154 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-HH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH-HC
Confidence 999999999999999999999 899999999999999999 888999999999999999999999999995555 46
Q ss_pred CChHHHHHHHhhhHHHHHH
Q 011578 167 GSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 167 ~~~~~~~lL~~~~~~~~~~ 185 (482)
++.+++++|+++|++.+..
T Consensus 155 ~~~~~~~~Ll~~g~~~~~~ 173 (237)
T 3b7b_A 155 GCVDIAEILLAAKCDLHAV 173 (237)
T ss_dssp CCHHHHHHHHTTTCCTTCC
T ss_pred CCHHHHHHHHHcCCCCCCc
Confidence 7888999999998876543
No 55
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=3.5e-28 Score=224.92 Aligned_cols=165 Identities=19% Similarity=0.167 Sum_probs=120.5
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHH
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpL 89 (482)
...|.||||.|+..|+.+.++.+|. .+.+++.. . .|.||||+|+..|+.++|++|++ .+++++.+|..|+|||
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~-~g~~~~~~-~-~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L 74 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIA-HGMRVKFN-P-LPLALLLDSSLEGEFDLVQRIIY----EVDDPSLPNDEGITAL 74 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTS----TTSSCCCCCTTSCCHH
T ss_pred CccccccCchhhhhhhHHHHHHHhc-cCCCcccC-c-hhhHHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHH
Confidence 3579999999999999999999885 46667754 3 39999999999999999999999 5778999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCC-Chhhhhh-cCCC
Q 011578 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGK-TPLDHLS-NGPG 167 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~-tpl~~~a-~~~~ 167 (482)
|+||..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.++..|. ||||++. ...+
T Consensus 75 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g 150 (239)
T 1ycs_B 75 HNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA----SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEG 150 (239)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhc
Confidence 9999999999999999999999999999999999999 88999999999999999999998887 9996552 5678
Q ss_pred ChHHHHHHHhhhHHHHHH
Q 011578 168 SAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 168 ~~~~~~lL~~~~~~~~~~ 185 (482)
+.+++++|+.++++....
T Consensus 151 ~~~~~~~Ll~~~a~~~~~ 168 (239)
T 1ycs_B 151 YTQCSQFLYGVQEKMGIM 168 (239)
T ss_dssp CCCHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHhhhccccc
Confidence 889999999998876543
No 56
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=5.6e-27 Score=229.31 Aligned_cols=245 Identities=17% Similarity=0.248 Sum_probs=185.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.+.+.+. .+..++..+.... .++.++||+||||||||++|+++|+.++. +|+.++
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~-------~~~~i~ 149 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVV---WPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGA-------TFFSIS 149 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTC-------EEEEEE
T ss_pred CCHHHhCChHHHHHHHHHHHH---HHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCC-------eEEEEe
Confidence 457889999999999998743 3444444333332 46789999999999999999999998754 899999
Q ss_pred cccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC------CcEEEEEecC
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGY 353 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~------~~~~vi~~~~ 353 (482)
++++.+.++|+....++.+|..+ .++||||||+|.+.+.++.+.+....+++++|+..+++ ..++||++|+
T Consensus 150 ~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn 229 (357)
T 3d8b_A 150 ASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 229 (357)
T ss_dssp GGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEES
T ss_pred hHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecC
Confidence 99999999999988888888765 45999999999999887766667778889999999874 4677887765
Q ss_pred chhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccC
Q 011578 354 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 433 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (482)
.... .++++++||+..+.++.|+.+++.+|++.++.... ..++.+.+..++.... ...
T Consensus 230 ~~~~-----l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~-----------~~l~~~~l~~la~~t~------G~s 287 (357)
T 3d8b_A 230 RPQE-----IDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQ-----------CCLSEEEIEQIVQQSD------AFS 287 (357)
T ss_dssp CGGG-----BCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSC-----------BCCCHHHHHHHHHHTT------TCC
T ss_pred Chhh-----CCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcC-----------CCccHHHHHHHHHHcC------CCC
Confidence 4332 38899999999999999999999999999887642 2356677777777543 457
Q ss_pred cchhHHHHHHHHHHhhhhhcC---CCCChhhhhcccHHHHHHHHHHHHhc
Q 011578 434 GGLVDPMLVNARENLDLRLSF---DCLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~~~r~~~---~~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
++++++++..|......++.. ......+...|+.+||..|+++++|.
T Consensus 288 ~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps 337 (357)
T 3d8b_A 288 GADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPS 337 (357)
T ss_dssp HHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCC
Confidence 899999999887665444321 12223445689999999999999984
No 57
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.95 E-value=1e-27 Score=242.05 Aligned_cols=245 Identities=19% Similarity=0.277 Sum_probs=191.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|.+..++++++++.. +..++..+..++..++.++||+||||||||++|+++|+.++. +|+.+++
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~---~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-------~fv~vn~ 271 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVEL---PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLING 271 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHH---HHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-------EEEEEEH
T ss_pred CHHHcCCHHHHHHHHHHHHHH---HhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-------CEEEEEc
Confidence 477899999999999987543 333333333445567889999999999999999999997754 8999999
Q ss_pred ccccccccccchhhHHHHHHhcCC---cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecCchh
Q 011578 284 TDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSEP 356 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~~---~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~~~ 356 (482)
+++.+.++|++...++.+|..+.. +||||||||.+.++++....+...++++.|+..|++ ..++||+||+...
T Consensus 272 ~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~ 351 (489)
T 3hu3_A 272 PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (489)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGG
T ss_pred hHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCcc
Confidence 999999999999999999987754 699999999999998877778888999999999974 5678888866543
Q ss_pred HHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 357 MKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 357 ~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
. .+|++++ ||+..++|+.|+.++|.+|++.+++... +..+.+.+.++..+. ...+
T Consensus 352 ~-----Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~---------l~~~~~l~~la~~t~---------g~s~ 408 (489)
T 3hu3_A 352 S-----IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK---------LADDVDLEQVANETH---------GHVG 408 (489)
T ss_dssp G-----BCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC---------BCTTCCHHHHHHTCT---------TCCH
T ss_pred c-----cCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC---------CcchhhHHHHHHHcc---------CCcH
Confidence 2 2889988 9999999999999999999999887643 233444444444333 4568
Q ss_pred chhHHHHHHHHHHhhhhhcC------CCCCh--hhhhcccHHHHHHHHHHHHhcC
Q 011578 435 GLVDPMLVNARENLDLRLSF------DCLDT--DELRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 435 ~~l~~~~~~a~~~~~~r~~~------~~~~~--~~~~~i~~~d~~~al~~~~~~~ 481 (482)
+++.+++.+|...+..+... +.... .....|+.+||..|++.++|..
T Consensus 409 ~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~ 463 (489)
T 3hu3_A 409 ADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (489)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchh
Confidence 89999999998887666432 11111 1234799999999999999863
No 58
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=227.23 Aligned_cols=164 Identities=22% Similarity=0.257 Sum_probs=149.2
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+||..|+.+.|+.|+.. +.++|..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+|
T Consensus 54 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~t 127 (285)
T 3d9h_A 54 GDAVSDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITAD-HVSPLHEACLGGHLSCVKILLK----HGAQVNGVTADWHT 127 (285)
T ss_dssp SSSCCSCCHHHHHHHTTCHHHHHHHHHT-TCCSCEECTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCSSCCCTTCCC
T ss_pred CCCccCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCC-CCCHHHHHHHCCcHHHHHHHHH----CCCCCCCCCCCCCC
Confidence 4567899999999999999999999964 6778888886 9999999999999999999999 57889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.+++++|+++|++++..+ +|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||+| +..+
T Consensus 128 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~----~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A-~~~~ 201 (285)
T 3d9h_A 128 PLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAA----RRGHVECVNSLIAYGGNIDHKISHLGTPLYLA-CENQ 201 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHH----HHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHH-HHTT
T ss_pred HHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH-HHcC
Confidence 9999999999999999999999998654 5999999999 88899999999999999999999999999555 4567
Q ss_pred ChHHHHHHHhhhHHHH
Q 011578 168 SAKLRELLLWHSEEQR 183 (482)
Q Consensus 168 ~~~~~~lL~~~~~~~~ 183 (482)
+.+++++|++.|++.+
T Consensus 202 ~~~~v~~Ll~~ga~~~ 217 (285)
T 3d9h_A 202 QRACVKKLLESGADVN 217 (285)
T ss_dssp CHHHHHHHHHTTCCTT
T ss_pred cHHHHHHHHHCCCCCC
Confidence 8889999999888765
No 59
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.95 E-value=8.8e-28 Score=222.08 Aligned_cols=168 Identities=30% Similarity=0.400 Sum_probs=151.5
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHh---hCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCC
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLR---ENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY 84 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~---~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 84 (482)
..+..|.||||+||..|+.+.+++|+. ..+.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~ 78 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLAVITTLPSVVRLLVT----AGASPMALDRH 78 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTT
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccccc-CCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCC
Confidence 467889999999999999999999986 478889998886 9999999999999999999999 57889999999
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCC----CccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccC-CCCCChh
Q 011578 85 GETPLHMAAKNGCNEAAKLLLAHGA----FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPL 159 (482)
Q Consensus 85 g~tpLh~A~~~g~~~~v~~Ll~~ga----~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d-~~g~tpl 159 (482)
|.||||+|+..|+.+++++|+++++ +++..|..|+||||+|+ ..|+.+++++|+++|++++..+ ..|.|||
T Consensus 79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L 154 (241)
T 1k1a_A 79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV----NTECQETVQLLLERGADIDAVDIKSGRSPL 154 (241)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHH----HHTCHHHHHHHHHTTCCTTCCCTTTCCCHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHH----HcCCHHHHHHHHHcCCCcccccccCCCcHH
Confidence 9999999999999999999999987 89999999999999999 7889999999999999999999 7899999
Q ss_pred hhhhcCCCChHHHHHHHhhhHHHHHH
Q 011578 160 DHLSNGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 160 ~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
|+|+ ..++.+++++|+++|++.+.+
T Consensus 155 ~~A~-~~~~~~~v~~Ll~~g~~~~~~ 179 (241)
T 1k1a_A 155 IHAV-ENNSLSMVQLLLQHGANVNAQ 179 (241)
T ss_dssp HHHH-HTTCHHHHHHHHHTTCCTTCB
T ss_pred HHHH-HcCCHHHHHHHHHcCCCCCCc
Confidence 5555 567888999999998876544
No 60
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.95 E-value=2.1e-27 Score=217.71 Aligned_cols=163 Identities=29% Similarity=0.381 Sum_probs=145.2
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCccccc-CcCCCChHHHH
Q 011578 13 KPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA-QNMYGETPLHM 91 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~~~~g~tpLh~ 91 (482)
|.||||.||..|+.+.|+.|+..++...+..+.. |+||||+|+..|+.+++++|+++++ ..+++. .+..|+||||+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~~~~~~g~t~L~~ 78 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQD-GRIPLHWSVSFQAHEITSFLLSKME--NVNLDDYPDDSGWTPFHI 78 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTCT--TCCGGGCCCTTSCCHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCC-CCCHHHHHHHcCCHHHHHHHHhccc--cccccccCCCCCCCHHHH
Confidence 6899999999999999999998877766667765 9999999999999999999999542 256666 88999999999
Q ss_pred HHHcCCHHHHHHHHhCC--CCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCCh
Q 011578 92 AAKNGCNEAAKLLLAHG--AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 169 (482)
Q Consensus 92 A~~~g~~~~v~~Ll~~g--a~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~ 169 (482)
|+..|+.+++++|+++| ++++..|..|+||||+|+ ..++.+++++|+++|++++.+|..|+||||+|+ ..++.
T Consensus 79 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~ 153 (228)
T 2dzn_A 79 ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV----GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA-SVGSL 153 (228)
T ss_dssp HHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH-HTTCH
T ss_pred HHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHH----HcCCHhHHHHHHHcCCCccccCCCCCCHHHHHH-HcCCH
Confidence 99999999999999999 899999999999999999 889999999999999999999999999995555 46788
Q ss_pred HHHHHHHhhh-HHHH
Q 011578 170 KLRELLLWHS-EEQR 183 (482)
Q Consensus 170 ~~~~lL~~~~-~~~~ 183 (482)
+++++|++.| ++.+
T Consensus 154 ~~v~~Ll~~g~~~~~ 168 (228)
T 2dzn_A 154 KLIELLCGLGKSAVN 168 (228)
T ss_dssp HHHHHHHTTTCCCSC
T ss_pred HHHHHHHhcCccccc
Confidence 8999999888 5543
No 61
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.95 E-value=7.3e-27 Score=233.64 Aligned_cols=233 Identities=22% Similarity=0.312 Sum_probs=177.9
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|++.+++.+.+.+..+..+..... ++...+.+++|+||||||||++|+++|++++. +|+.+++
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~----~g~~~p~gvLL~GppGtGKT~Laraia~~~~~-------~f~~is~ 82 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNR----IGARMPKGILLVGPPGTGKTLLARAVAGEANV-------PFFHISG 82 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHT----TTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC-------CEEEEEG
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhh----cCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-------CeeeCCH
Confidence 578999999999999998766544443333 34456778999999999999999999998865 8999999
Q ss_pred ccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCC---CCChhHHHHHHHHHhhhcC----CcEEEEEecC
Q 011578 284 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKA---DDKDYGIEALEEIMSVMDG----GKVVVIFAGY 353 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~---~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~ 353 (482)
+++...++|.++..++.+|..+. ++||||||+|.+.++++. +.+....+++++|+..|++ ..++||++|+
T Consensus 83 ~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn 162 (476)
T 2ce7_A 83 SDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATN 162 (476)
T ss_dssp GGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEES
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecC
Confidence 99999999999999999998764 589999999999988763 2344556788999999973 4577888766
Q ss_pred chhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 354 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
.... .+|++++ ||+..|.|+.|+.++|.+|++.++++.. +..+++...++..+. .
T Consensus 163 ~~~~-----Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~---------l~~~v~l~~la~~t~---------G 219 (476)
T 2ce7_A 163 RPDI-----LDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP---------LAEDVNLEIIAKRTP---------G 219 (476)
T ss_dssp CGGG-----SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---------BCTTCCHHHHHHTCT---------T
T ss_pred Chhh-----hchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC---------CcchhhHHHHHHhcC---------C
Confidence 5432 2888876 9999999999999999999999887642 334455444333222 3
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
..+|+|.+++++|...+..+ ....|+.+||.+|++++.+
T Consensus 220 ~sgadL~~lv~~Aal~A~~~---------~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 220 FVGADLENLVNEAALLAARE---------GRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp CCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHHHHHHHHc---------CCCeecHHHHHHHHHHHhc
Confidence 34599999999988765322 2246999999999998753
No 62
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.95 E-value=2.4e-27 Score=233.49 Aligned_cols=129 Identities=24% Similarity=0.242 Sum_probs=97.2
Q ss_pred CChHHHHHHhCC--cHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCC-----ccccccCCCc
Q 011578 48 AQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF-----IEAKANNGMT 120 (482)
Q Consensus 48 g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-----~~~~d~~g~t 120 (482)
|+||||+|+..| +.++|++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+|
T Consensus 138 g~t~L~~A~~~g~~~~~~v~~Ll~----~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t 213 (364)
T 3ljn_A 138 GQTALHWCVGLGPEYLEMIKILVQ----LGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS 213 (364)
T ss_dssp CCCHHHHHHHSCGGGHHHHHHHHH----HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC
T ss_pred CCCHHHHHHHcCCchHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCc
Confidence 777777777777 7777777777 4667777777788888888888888888888877777 7777778888
Q ss_pred ceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHH
Q 011578 121 PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 121 pLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
|||+|+ ..|+.+++++|+++|+|++.+|..|+||||+ |+..++.+++++|++++++....
T Consensus 214 ~L~~A~----~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~-A~~~g~~~~v~~Ll~~~~~~~~~ 273 (364)
T 3ljn_A 214 HLHWAI----LINWEDVAMRFVEMGIDVNMEDNEHTVPLYL-SVRAAMVLLTKELLQKTDVFLIQ 273 (364)
T ss_dssp TTHHHH----TTTCHHHHHHHHTTTCCTTCCCTTSCCHHHH-HHHTCCHHHHHHHHHHSCHHHHH
T ss_pred HHHHHH----HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH-HHHhChHHHHHHHHHcCCchhhh
Confidence 888887 7777888888888888888888888888844 44456777777777777766443
No 63
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.95 E-value=1.4e-28 Score=227.07 Aligned_cols=169 Identities=26% Similarity=0.357 Sum_probs=147.3
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCC---CCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCC
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENP---SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY 84 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~---~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 84 (482)
..+..|.||||+||..|+.+.++.|+.... .++|..+.. |+||||+|+..|+.+++++|++ .|++++.+|..
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~ 77 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLAVITNQPEIAEALLG----AGCDPELRDFR 77 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTT-CCCHHHHHHHTTCHHHHHCCCS----CCCCSCCCCTT
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCC
Confidence 456789999999999999999999887554 368888876 9999999999999999999999 57889999999
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCCC------ccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCC-CCCC
Q 011578 85 GETPLHMAAKNGCNEAAKLLLAHGAF------IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN-EGKT 157 (482)
Q Consensus 85 g~tpLh~A~~~g~~~~v~~Ll~~ga~------~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~-~g~t 157 (482)
|+||||+|+..|+.+++++|+++|++ ++..+..|+||||+|+ ..|+.+++++|+++|++++.++. .|+|
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~~g~t 153 (236)
T 1ikn_D 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS----IHGYLGIVELLVSLGADVNAQEPCNGRT 153 (236)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHH----HTTCHHHHHHHHHHTCCTTCCCTTTCCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCCCCCCCCCC
Confidence 99999999999999999999999976 5778889999999999 88999999999999999999998 9999
Q ss_pred hhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 158 PLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 158 pl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
|||+|+ ..++.+++++|+++|++.+.+.
T Consensus 154 pL~~A~-~~~~~~~v~~Ll~~ga~~~~~~ 181 (236)
T 1ikn_D 154 ALHLAV-DLQNPDLVSLLLKCGADVNRVT 181 (236)
T ss_dssp HHHHHH-HTTCHHHHHHHHTTTCCSCCCC
T ss_pred HHHHHH-HcCCHHHHHHHHHcCCCCCccc
Confidence 995555 5678899999999998765443
No 64
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.94 E-value=5.6e-27 Score=222.78 Aligned_cols=166 Identities=25% Similarity=0.310 Sum_probs=140.0
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+||..|+.++|+.|+. .+.+++..+.. |+||||+|+..|+.+++++|+++ +++++..+ .|.|
T Consensus 87 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~-~g~t 159 (285)
T 3d9h_A 87 IITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTAD-WHTPLFNACVSGSWDCVNLLLQH----GASVQPES-DLAS 159 (285)
T ss_dssp EECTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSSCCCTT-CCCHHHHHHHHTCHHHHHHHHHT----TCCSSCSC-TTSC
T ss_pred CcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCCC-CCCHHHHHHHcCHHHHHHHHHHC----CCCCCCCC-CCCC
Confidence 346679999999999999999998885 47778888876 99999999999999999999994 55666543 4899
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++. |..|+||||+| +..+
T Consensus 160 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A-~~~~ 233 (285)
T 3d9h_A 160 PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC----ENQQRACVKKLLESGADVNQ-GKGQDSPLHAV-VRTA 233 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHH----HTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHH-HHTT
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH----HcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHH-HHcC
Confidence 999999999999999999999999999999999999999 78889999999999999984 88899999544 4567
Q ss_pred ChHHHHHHHhhhHHHHHHh
Q 011578 168 SAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 168 ~~~~~~lL~~~~~~~~~~~ 186 (482)
+.+++++|+++|++.+.+.
T Consensus 234 ~~~~v~~Ll~~gad~~~~d 252 (285)
T 3d9h_A 234 SEELACLLMDFGADTQAKN 252 (285)
T ss_dssp CHHHHHHHHHTTCCTTCCC
T ss_pred CHHHHHHHHHCCCCCCCcC
Confidence 7788888888888766543
No 65
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.94 E-value=8.8e-28 Score=226.82 Aligned_cols=175 Identities=23% Similarity=0.263 Sum_probs=143.0
Q ss_pred ccccCCCCCchHhHHHHHcCCHHHHHHHHhh---CCCCcc----CCCCCCCChHHHHHHhC---CcHHHHHHHHcCCCCC
Q 011578 5 QDRRSRSAKPATIHGCAQSGDLLAFQRLLRE---NPSLLN----ERNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGND 74 (482)
Q Consensus 5 ~~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~---~~~~~~----~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~ 74 (482)
.....+..|.||||+||..|+.+.|+.||.. .+..++ ..+. .|+||||+|+.. |+.++|++|+++|++.
T Consensus 5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~-~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~ 83 (273)
T 2pnn_A 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPE-TGKTCLLKAMLNLHNGQNDTIALLLDVARKT 83 (273)
T ss_dssp ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTT-TCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCc-CCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence 3456678899999999999999999998863 454444 2344 499999999987 9999999999953321
Q ss_pred -------CcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCcccccc--------------CCCcceeeehhhccCCC
Q 011578 75 -------KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN--------------NGMTPLHLSVWYSIRSE 133 (482)
Q Consensus 75 -------~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--------------~g~tpLh~A~~~~~~~~ 133 (482)
...+..+|..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|+ ..|
T Consensus 84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~----~~g 159 (273)
T 2pnn_A 84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA----CTN 159 (273)
T ss_dssp TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHH----HTT
T ss_pred cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHH----HcC
Confidence 111223677899999999999999999999999999999997 7999999999 889
Q ss_pred hHHHHHHHhh---CCCCccccCCCCCChhhhhhcCCCC--------hHHHHHHHhhhHHHHH
Q 011578 134 DYATVKTLLE---YNADCSAKDNEGKTPLDHLSNGPGS--------AKLRELLLWHSEEQRK 184 (482)
Q Consensus 134 ~~~~v~~Ll~---~gad~~~~d~~g~tpl~~~a~~~~~--------~~~~~lL~~~~~~~~~ 184 (482)
+.+++++|++ +|++++.+|..|+||||+|+..+.. .+++++|+.+|++.+.
T Consensus 160 ~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~ 221 (273)
T 2pnn_A 160 QLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP 221 (273)
T ss_dssp CHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccc
Confidence 9999999999 9999999999999999777765443 6788899999988753
No 66
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.94 E-value=3.4e-28 Score=231.14 Aligned_cols=166 Identities=18% Similarity=0.110 Sum_probs=124.1
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.||||+||..|+.+.|+.|+.. +.+++..+ |+||||+|+..|+.+++++|++ .|++++.+|..|+
T Consensus 25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~---g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~d~~g~ 96 (285)
T 3kea_A 25 FKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLLE---NEFPLHQAATLEDTKIVKILLF----SGLDDSQFDDKGN 96 (285)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCCT---TCCHHHHHTTSSSCHHHHHHHH----TTCCTTCCCTTSC
T ss_pred CccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCC---CCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCC
Confidence 45567788888888888888888888854 56666663 7888888888888888888888 5777888888888
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCC-CcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNG-MTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 165 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g-~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~ 165 (482)
||||+|+..|+.+++++|+++|++++.+|..| .||||+|+ ..|+.+++++|+++|+++... ..|+||||+|+ .
T Consensus 97 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~-~ 170 (285)
T 3kea_A 97 TALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV----MLNDVSIVSYFLSEIPSTFDL-AILLSCIHITI-K 170 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHH----HTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHH-H
T ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH----HcCCHHHHHHHHhCCCccccc-cCCccHHHHHH-H
Confidence 88888888888888888888888888888888 68888888 666777777777777665222 16677774433 3
Q ss_pred CCChHHHHHHHhhhHHHHHHh
Q 011578 166 PGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 166 ~~~~~~~~lL~~~~~~~~~~~ 186 (482)
.++.+++++|+++|++++.+.
T Consensus 171 ~g~~~~v~~Ll~~gad~n~~~ 191 (285)
T 3kea_A 171 NGHVDMMILLLDYMTSTNTNN 191 (285)
T ss_dssp TTCHHHHHHHHHHHHHTCTTC
T ss_pred cChHHHHHHHHHcCCCCCccc
Confidence 456666666666666655443
No 67
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=9.7e-28 Score=206.65 Aligned_cols=142 Identities=18% Similarity=0.215 Sum_probs=117.4
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
.....|.||||+||..|+.+.|+.|+.. +.+++..+.. |+||||+|+ .|+.+++++|++ .+++++.+|..|+|
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~-~~~~~~v~~Ll~----~g~~~~~~d~~g~t 79 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSY-GRRPIQVMM-MGSARVAELLLL----HGAEPNCADPATLT 79 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSS-SCCTTTSSC-TTCHHHHHHHHT----TTCCCCCCCTTTCC
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCC-CCCHHHHHH-cCCHHHHHHHHH----cCCCCCCcCCCCCc
Confidence 4567789999999999999999999955 7788888886 999999986 999999999999 57889999999999
Q ss_pred -HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhh
Q 011578 88 -PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 160 (482)
Q Consensus 88 -pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~ 160 (482)
|||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|..|.||.+
T Consensus 80 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 80 RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE----ELGHRDVARYLRAAAGGTRGSNHARIDAAE 149 (156)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHH----HHTCHHHHHHHSSCC---------------
T ss_pred HHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH----HhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence 999999999999999999999999999999999999999 788999999999999999999999999983
No 68
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.94 E-value=5e-27 Score=229.36 Aligned_cols=100 Identities=28% Similarity=0.354 Sum_probs=81.3
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+||..|+.++|+.|++ .+.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|.|
T Consensus 53 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~g~~~iv~~Ll~----~g~~~~~~~~~g~t 126 (351)
T 3utm_A 53 ASDGRKSTPLHLAAGYNRVRIVQLLLQ-HGADVHAKDKG-GLVPLHNACSYGHYEVTELLLK----HGACVNAMDLWQFT 126 (351)
T ss_dssp CSSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCC
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCC-CCcHHHHHHHCCCHHHHHHHHH----CCCCCCCCCCCCCC
Confidence 345678899999999999999988885 46778888776 8899999999999999999998 56778888888888
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccc
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEA 113 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~ 113 (482)
|||+|+..|+.+++++|+++|++++.
T Consensus 127 ~L~~A~~~~~~~~v~~Ll~~g~~~~~ 152 (351)
T 3utm_A 127 PLHEAASKNRVEVCSLLLSHGADPTL 152 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence 88888888888888887777766554
No 69
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.94 E-value=1e-27 Score=227.81 Aligned_cols=171 Identities=12% Similarity=0.055 Sum_probs=148.3
Q ss_pred ccccccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCc
Q 011578 3 KNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN 82 (482)
Q Consensus 3 ~~~~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 82 (482)
.|.+.... .|.||||+||..|+.++++.|+. .+.+++..+.. |+||||+|+..|+.+++++|++ .|++++.+|
T Consensus 53 ~g~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~ 125 (285)
T 3kea_A 53 AGALKNLL-ENEFPLHQAATLEDTKIVKILLF-SGLDDSQFDDK-GNTALYYAVDSGNMQTVKLFVK----KNWRLMFYG 125 (285)
T ss_dssp TTGGGSCC-TTCCHHHHHTTSSSCHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----HCGGGGGCS
T ss_pred CCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCC-CCcHHHHHHHcCCHHHHHHHHh----cCCCCCccC
Confidence 34444444 58999999999999999999885 47778888876 9999999999999999999999 588899999
Q ss_pred CCC-ChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCCh-hh
Q 011578 83 MYG-ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTP-LD 160 (482)
Q Consensus 83 ~~g-~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tp-l~ 160 (482)
..| .||||+|+..|+.+++++|+++|+++... ..|+||||+|+ ..|+.+++++|+++|++++.+|..|+|| |
T Consensus 126 ~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~----~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L- 199 (285)
T 3kea_A 126 KTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITI----KNGHVDMMILLLDYMTSTNTNNSLLFIPDI- 199 (285)
T ss_dssp SSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHH----HTTCHHHHHHHHHHHHHTCTTCCCBCCTTH-
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHH----HcChHHHHHHHHHcCCCCCcccCCCCChHH-
Confidence 999 79999999999999999999999887332 28999999999 8889999999999999999999999998 8
Q ss_pred hhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 161 HLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 161 ~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
+.|...++.+++++|+++|++++...
T Consensus 200 ~~A~~~~~~~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 200 KLAIDNKDIEMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHTCHHHHHHHTTSCBCSTTTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 44555778899999999999877665
No 70
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=229.88 Aligned_cols=244 Identities=22% Similarity=0.268 Sum_probs=177.5
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|++.+++.+.+++ ..+..+...+.... .++.++||+||||||||++|+++|+.++. +|+.+++
T Consensus 113 ~~~~iiG~~~~~~~l~~~~---~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~-------~~~~v~~ 181 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIV---ILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNA-------TFFNISA 181 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHT---HHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTC-------EEEEECS
T ss_pred ChHHhCCHHHHHHHHHHHH---HHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcC-------cEEEeeH
Confidence 5789999999999999874 34444444444443 35679999999999999999999998765 8999999
Q ss_pred ccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC------CcEEEEEecCc
Q 011578 284 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGYS 354 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~------~~~~vi~~~~~ 354 (482)
+++.+.|+|+....++.+|..+. ++||||||||.+...++....+...++++.|+..|++ ..++||++|+.
T Consensus 182 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 182 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp CCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred HHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 99999999999988998887654 4999999999999887766666777888899988873 45788887654
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
.. . .++++++||+..+.|+.|+.+++.+|++.++.+.. ..++.+.+..++.... ...+
T Consensus 262 ~~--~---l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-----------~~l~~~~~~~la~~~~------g~~~ 319 (389)
T 3vfd_A 262 PQ--E---LDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG-----------SPLTQKELAQLARMTD------GYSG 319 (389)
T ss_dssp GG--G---CCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC-----------CCSCHHHHHHHHHHTT------TCCH
T ss_pred ch--h---cCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHHHcC------CCCH
Confidence 32 2 38999999999999999999999999999887643 2456677777776543 5677
Q ss_pred chhHHHHHHHHHHhhhhhcCC---CCChhhhhcccHHHHHHHHHHHHhc
Q 011578 435 GLVDPMLVNARENLDLRLSFD---CLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 435 ~~l~~~~~~a~~~~~~r~~~~---~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
+++..++..|......++... .....+...|+.+||..+++.++|.
T Consensus 320 ~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 320 SDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp HHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCC
Confidence 899999888877665554321 1222345689999999999987663
No 71
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.94 E-value=1.2e-26 Score=221.93 Aligned_cols=158 Identities=24% Similarity=0.284 Sum_probs=136.8
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC------
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ------ 81 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~------ 81 (482)
..+..|.||||+||..|+.++|+.|+. .+.+++..+.. |+||||+|+..|+.+++++|+++|+ +++..
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~-g~tpL~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t 141 (299)
T 1s70_B 68 YANVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDNE-GWIPLHAAASCGYLDIAEYLISQGA----HVGAVNSEGDT 141 (299)
T ss_dssp CBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHhCCC----CCCCcCCCCCC
Confidence 356779999999999999999999995 57888888886 9999999999999999999999644 44333
Q ss_pred ------------------------------------------------------cCCCChHHHHHHHcCCHHHHHHHHhC
Q 011578 82 ------------------------------------------------------NMYGETPLHMAAKNGCNEAAKLLLAH 107 (482)
Q Consensus 82 ------------------------------------------------------~~~g~tpLh~A~~~g~~~~v~~Ll~~ 107 (482)
+..|.||||+|+..|+.+++++|+++
T Consensus 142 ~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 221 (299)
T 1s70_B 142 PLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA 221 (299)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc
Confidence 34688999999999999999999999
Q ss_pred CCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHH
Q 011578 108 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 176 (482)
Q Consensus 108 ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~ 176 (482)
|++++.+|..|+||||+|+ ..|+.+++++|+++|+|++.+|..|+||||+| .......+.+++.
T Consensus 222 g~d~~~~d~~g~tpL~~A~----~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A-~~~~~~~l~~l~~ 285 (299)
T 1s70_B 222 RYDVNIKDYDGWTPLHAAA----HWGKEEACRILVENLCDMEAVNKVGQTAFDVA-DEDILGYLEELQK 285 (299)
T ss_dssp TCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC-CSGGGHHHHHHHH
T ss_pred CCCCCCcCCCCCcHHHHHH----hcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH-HHHHHHHHHHHHH
Confidence 9999999999999999999 88999999999999999999999999999555 4444444444444
No 72
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.94 E-value=5.1e-26 Score=212.70 Aligned_cols=232 Identities=19% Similarity=0.281 Sum_probs=176.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.+.+.+..+..+ ......+...+.+++|+||||||||++|+++|+.+.. +++.++
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~i~ 77 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREP----SRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-------PFFTIS 77 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCG----GGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC-------CEEEEC
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCH----HHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-------CEEEEe
Confidence 35789999999999999876554322 2333344456778999999999999999999998754 789999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
++++...++|++...++.+|..+. ++|+||||+|.+.+.++.. ..+...+.++.++..+++ ..++||++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~t 157 (257)
T 1lv7_A 78 GSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT 157 (257)
T ss_dssp SCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEE
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEee
Confidence 999999999999989999998764 3799999999999877632 234445778889988874 457777776
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+.... .+|++.+ ||+..+.|+.|+.++|.+|++.++++.. +.++.+... ++. .|
T Consensus 158 n~~~~-----l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~---------l~~~~~~~~---la~-~~------ 213 (257)
T 1lv7_A 158 NRPDV-----LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP---------LAPDIDAAI---IAR-GT------ 213 (257)
T ss_dssp SCTTT-----SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---------BCTTCCHHH---HHH-TC------
T ss_pred CCchh-----CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC---------CCccccHHH---HHH-Hc------
Confidence 55432 2788887 9999999999999999999999887542 333434332 222 22
Q ss_pred cc-CcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 431 EM-NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 431 ~~-~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
+| |+|++++++++|...+..+ ....|+.+||.+|++.+.
T Consensus 214 ~G~~~~dl~~l~~~a~~~a~~~---------~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 214 PGFSGADLANLVNEAALFAARG---------NKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHh---------CCCcccHHHHHHHHHHHh
Confidence 45 9999999999998876332 225799999999999875
No 73
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.94 E-value=5.7e-27 Score=224.10 Aligned_cols=245 Identities=22% Similarity=0.307 Sum_probs=181.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.+.+.+ ..+..+++....+. .++.+++|+||||||||++|+++|+.+.. +|+.++
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i---~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~-------~~~~i~ 86 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMV---ILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSA-------TFLNIS 86 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHT---HHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTC-------EEEEEE
T ss_pred CCHHHhCChHHHHHHHHHHH---HhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCC-------CeEEee
Confidence 35789999999999999873 34444444444333 35679999999999999999999998754 899999
Q ss_pred cccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-------CcEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-------GKVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-------~~~~vi~~~ 352 (482)
++++.+.++|+++..++.+|..+ .++||||||+|.+...++....+...++.+.|+..+++ ..++||++|
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~t 166 (297)
T 3b9p_A 87 AASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAAT 166 (297)
T ss_dssp STTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEE
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeec
Confidence 99999999999888888887654 46999999999999887755455556777788887764 346777775
Q ss_pred CchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcccc
Q 011578 353 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 432 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 432 (482)
+.... .+|++++||+..+.++.|+.+++..|++.++.+.. ..++.+.+..++.... ..
T Consensus 167 n~~~~-----l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~-----------~~~~~~~~~~la~~~~------g~ 224 (297)
T 3b9p_A 167 NRPQE-----LDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQG-----------SPLDTEALRRLAKITD------GY 224 (297)
T ss_dssp SCGGG-----BCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGS-----------CCSCHHHHHHHHHHTT------TC
T ss_pred CChhh-----CCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHHHcC------CC
Confidence 54331 28889999999999999999999999999887642 2356677777776543 56
Q ss_pred CcchhHHHHHHHHHHhhhhhcCC---CCChhhhhcccHHHHHHHHHHHHhc
Q 011578 433 NGGLVDPMLVNARENLDLRLSFD---CLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 433 ~~~~l~~~~~~a~~~~~~r~~~~---~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
.+++++++++.|......++... .....+...|+.+||..|++.++|.
T Consensus 225 ~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s 275 (297)
T 3b9p_A 225 SGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRS 275 (297)
T ss_dssp CHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCC
Confidence 67899999998877665444211 1112234579999999999887763
No 74
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.94 E-value=1.1e-27 Score=235.74 Aligned_cols=170 Identities=18% Similarity=0.169 Sum_probs=126.1
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCC----------------
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGN---------------- 73 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~---------------- 73 (482)
+..|.||||+||..|+.++|+.||.. +.+++..+.. |+||||+||..|+.++|++|++++++
T Consensus 17 d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 17 DDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQNRF-GCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTT-CCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCC-CCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHc
Confidence 34455666666666666666655533 4445555554 56666666666666666666554321
Q ss_pred -----------C----Cccccc-----------------CcCCCChHHHHHHHcC--CHHHHHHHHhCCCCccccccCCC
Q 011578 74 -----------D----KVELEA-----------------QNMYGETPLHMAAKNG--CNEAAKLLLAHGAFIEAKANNGM 119 (482)
Q Consensus 74 -----------~----~~~~~~-----------------~~~~g~tpLh~A~~~g--~~~~v~~Ll~~ga~~~~~d~~g~ 119 (482)
. +.+++. +|..|.||||+|+..| +.+++++|+++|++++.+|..|+
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~ 174 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADE 174 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSC
T ss_pred CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCC
Confidence 1 334443 7788999999999999 99999999999999999999999
Q ss_pred cceeeehhhccCCChHHHHHHHhhCCCC-----ccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 120 TPLHLSVWYSIRSEDYATVKTLLEYNAD-----CSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 120 tpLh~A~~~~~~~~~~~~v~~Ll~~gad-----~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
||||+|+ ..|+.+++++|+++|++ ++.+|..|+||||+ |+..++.+++++|+++|++++.+.
T Consensus 175 t~L~~A~----~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~v~~Ll~~gad~~~~d 241 (364)
T 3ljn_A 175 TPLMRAM----EFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW-AILINWEDVAMRFVEMGIDVNMED 241 (364)
T ss_dssp CHHHHHH----HTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHH-HHTTTCHHHHHHHHTTTCCTTCCC
T ss_pred CHHHHHH----HcCCHHHHHHHHhcccccccccccccCCCCCcHHHH-HHHcCCHHHHHHHHHcCCCCCCCC
Confidence 9999999 88899999999999988 99999999999954 455778889999999988865443
No 75
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.94 E-value=5.3e-27 Score=220.09 Aligned_cols=234 Identities=19% Similarity=0.292 Sum_probs=161.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|++.+++.+.+++..+..+. .....+...+.+++|+||||||||++|+++|+.++. +++.+++
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~----~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~~~~ 72 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPE----RFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV-------PFLAMAG 72 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC----------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-------CEEEEET
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHH----HHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEech
Confidence 47889999999999998866543322 223344567789999999999999999999998865 8999999
Q ss_pred ccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCC----ChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 284 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD----KDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~----~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
+++...+.|.+...++.+|..+. ++||||||+|.+..++.... +......++.|+..+++ ..+++|+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~t 152 (262)
T 2qz4_A 73 AEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLAST 152 (262)
T ss_dssp TTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEE
T ss_pred HHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecC
Confidence 99988888888888888888764 69999999999987664321 22334667888888775 457777776
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHH-HHHHHHHHHhhHhhc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD-AIAALIEKETTEKQR 429 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~ 429 (482)
+.... + ++++.+ ||+..++|+.|+.+++.+|++.++.+.. +.. +.+ .+..++...
T Consensus 153 n~~~~--l---d~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-------~~~----~~~~~~~~l~~~~------ 210 (262)
T 2qz4_A 153 NRADI--L---DGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK-------LTQ----SSTFYSQRLAELT------ 210 (262)
T ss_dssp SCGGG--G---GSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT-------CCB----THHHHHHHHHHTC------
T ss_pred CChhh--c---CHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC-------CCc----chhhHHHHHHHHC------
Confidence 54332 2 788888 9999999999999999999999998653 111 222 223333322
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
....+++++++++.|...+.. .....|+.+||..|++++.+
T Consensus 211 ~g~~~~~l~~l~~~a~~~a~~---------~~~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 211 PGFSGADIANICNEAALHAAR---------EGHTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp TTCCHHHHHHHHHHHHTC-----------------CCBCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH---------cCCCCCCHHHHHHHHHHhcc
Confidence 245678999999988765421 23457999999999998875
No 76
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1.7e-26 Score=219.40 Aligned_cols=234 Identities=22% Similarity=0.315 Sum_probs=179.0
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|.+.+++.+.+++.. +...+......+...+.+++|+||||||||++|+++|+.++. +++.+++
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-------~~~~v~~ 84 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVEL---PLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-------TFIRVVG 84 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHH---HHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-------EEEEEEG
T ss_pred CHHHhcCHHHHHHHHHHHHHH---HhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEeh
Confidence 578899999999999987543 222222222334456788999999999999999999998765 8999999
Q ss_pred ccccccccccchhhHHHHHHhc---CCcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcC----CcEEEEEecC
Q 011578 284 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAGY 353 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a---~~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~----~~~~vi~~~~ 353 (482)
+++...++|.....+..+|..+ .++||||||+|.+.++++... .......+..++..++. +.++||++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn 164 (285)
T 3h4m_A 85 SELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN 164 (285)
T ss_dssp GGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECS
T ss_pred HHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence 9999999999988888888765 447999999999988776442 33445677777777753 4677888765
Q ss_pred chhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 354 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
.... .+|++++ ||+..+.|+.|+.+++.+|++.++.... +..+.+...++..+. .
T Consensus 165 ~~~~-----l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~---------~~~~~~~~~l~~~~~---------g 221 (285)
T 3h4m_A 165 RPDI-----LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN---------LAEDVNLEEIAKMTE---------G 221 (285)
T ss_dssp CGGG-----BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC---------BCTTCCHHHHHHHCT---------T
T ss_pred Cchh-----cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC---------CCCcCCHHHHHHHcC---------C
Confidence 4432 2788888 9999999999999999999999887543 234445555555544 4
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
.+++++++++..|...+..+- ...|+.+||.+|++++.+
T Consensus 222 ~~~~~i~~l~~~a~~~a~~~~---------~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 222 CVGAELKAICTEAGMNAIREL---------RDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp CCHHHHHHHHHHHHHHHHHTT---------CSSBCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhc---------cCcCCHHHHHHHHHHHHh
Confidence 468899999999988764432 246999999999998864
No 77
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.94 E-value=2.2e-27 Score=230.05 Aligned_cols=153 Identities=21% Similarity=0.250 Sum_probs=125.3
Q ss_pred cccccc--CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCc---HHHHHHHHcCCCCCCcc
Q 011578 3 KNQDRR--SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK---AEIVKSLLEWPGNDKVE 77 (482)
Q Consensus 3 ~~~~~~--~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~---~~~v~~Ll~~~~~~~~~ 77 (482)
.|.+.. .+..|.||||+||..|+.++|+.||+ .+.++|..+.. |+||||+|+..|+ .++++.|+++ ..++
T Consensus 119 ~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~Gad~n~~d~~-g~TpLh~A~~~g~~~~~~~~~~ll~~---~~~~ 193 (327)
T 1sw6_A 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDNM-GESCLVKAVKSVNNYDSGTFEALLDY---LYPC 193 (327)
T ss_dssp SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBCCTT-CCCHHHHHHHSSHHHHTTCHHHHHHH---HGGG
T ss_pred cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCC-CCCHHHHHHHhcccccHHHHHHHHHh---hhcc
Confidence 344443 47889999999999999999999995 47889988886 9999999999999 6888888874 2367
Q ss_pred cccCcCCCChHHHHHHH----cCCHHHHHHHHhCC--------------------C------------------------
Q 011578 78 LEAQNMYGETPLHMAAK----NGCNEAAKLLLAHG--------------------A------------------------ 109 (482)
Q Consensus 78 ~~~~~~~g~tpLh~A~~----~g~~~~v~~Ll~~g--------------------a------------------------ 109 (482)
++.+|..|+||||+|+. .|+.+++++|++.+ +
T Consensus 194 ~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~ 273 (327)
T 1sw6_A 194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA 273 (327)
T ss_dssp GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHH
Confidence 99999999999999999 89999999999873 3
Q ss_pred -CccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhc
Q 011578 110 -FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164 (482)
Q Consensus 110 -~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~ 164 (482)
+++.+|.+|+||||+|+ ..|+.++|++|+++|+|++.+|..|+||||+|+.
T Consensus 274 ~~~n~~d~~G~TpLh~A~----~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~ 325 (327)
T 1sw6_A 274 NMLNAQDSNGDTCLNIAA----RLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325 (327)
T ss_dssp HTTTCCCTTSCCHHHHHH----HHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC
T ss_pred hCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHh
Confidence 46677777888888888 6677888888888888888888888888855554
No 78
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.94 E-value=1.6e-27 Score=223.28 Aligned_cols=170 Identities=23% Similarity=0.309 Sum_probs=142.8
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHh---hCCCCccCCC---CCCCChHHHHHH---hCCcHHHHHHHHcCCCCC------
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLR---ENPSLLNERN---PVMAQTPLHVSA---GYNKAEIVKSLLEWPGND------ 74 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~---~~~~~~~~~~---~~~g~tpLh~A~---~~g~~~~v~~Ll~~~~~~------ 74 (482)
+.-+.++||.||..|+.+.|+.++. ..+..++..+ +..|+||||+|+ ..|+.+++++|++++++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 3457899999999999998777765 3556666554 134999999999 779999999999954321
Q ss_pred -CcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccc--------------cCCCcceeeehhhccCCChHHHHH
Q 011578 75 -KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA--------------NNGMTPLHLSVWYSIRSEDYATVK 139 (482)
Q Consensus 75 -~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d--------------~~g~tpLh~A~~~~~~~~~~~~v~ 139 (482)
..+++..|..|+||||+||..|+.++|++|+++|++++.++ .+|+||||+|+ ..|+.++++
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~----~~g~~~~v~ 157 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAA----CTNQPHIVH 157 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHH----HTTCHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHH----HcCCHHHHH
Confidence 13355566789999999999999999999999999999998 68999999999 889999999
Q ss_pred HHhh---CCCCccccCCCCCChhhhhhcCCCC--------hHHHHHHHhhhHHHH
Q 011578 140 TLLE---YNADCSAKDNEGKTPLDHLSNGPGS--------AKLRELLLWHSEEQR 183 (482)
Q Consensus 140 ~Ll~---~gad~~~~d~~g~tpl~~~a~~~~~--------~~~~~lL~~~~~~~~ 183 (482)
+|++ +|++++.+|..|+||||+|+..+.. .+++++|+++|++..
T Consensus 158 ~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~ 212 (260)
T 3jxi_A 158 YLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF 212 (260)
T ss_dssp HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccc
Confidence 9999 9999999999999999777754432 578999999999873
No 79
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=7.3e-27 Score=214.40 Aligned_cols=148 Identities=22% Similarity=0.203 Sum_probs=133.5
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
....++.||||+||..|+.+.|+.||.. +.++|..+.. |+||||+||..|+.+++++|++ .|++++.+|..|+|
T Consensus 16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll~----~ga~~n~~d~~g~t 89 (229)
T 2vge_A 16 RARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQPNEE-GITALHNAICGANYSIVDFLIT----AGANVNSPDSHGWT 89 (229)
T ss_dssp CTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCC
T ss_pred ccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCC
Confidence 3455788999999999999999999965 6678888876 9999999999999999999999 58889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccc-cCCCcceeee--hhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhc
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLS--VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A--~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~ 164 (482)
|||+|+..|+.+++++|+++|++++.++ .+|+||||+| + ..|+.+++++|+++|++++.+|..|.||++.++.
T Consensus 90 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~----~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~ 165 (229)
T 2vge_A 90 PLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPY----REGYADCATYLADVEQSMGLMNSGAVYALWDYSA 165 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTT----STTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHH----hcChHHHHHHHHHcCCCcccccCCchHHHHHHhh
Confidence 9999999999999999999999999986 6999999999 8 8999999999999999988888888888854444
Q ss_pred C
Q 011578 165 G 165 (482)
Q Consensus 165 ~ 165 (482)
.
T Consensus 166 ~ 166 (229)
T 2vge_A 166 E 166 (229)
T ss_dssp S
T ss_pred c
Confidence 3
No 80
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=1.7e-26 Score=236.52 Aligned_cols=130 Identities=20% Similarity=0.237 Sum_probs=108.3
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccCC------CCCCCChHHHHHHh---CCcHHHHHHHHcCCCCCCcccccCc
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNER------NPVMAQTPLHVSAG---YNKAEIVKSLLEWPGNDKVELEAQN 82 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~------~~~~g~tpLh~A~~---~g~~~~v~~Ll~~~~~~~~~~~~~~ 82 (482)
...+.||.|+..|+.+.|+.||.. +.++|.. +.. |+||||+||. .|+.++|++|++ .|+++|.+|
T Consensus 131 ~~~~~L~~A~~~g~~~~v~~ll~~-g~~~n~~~~~~~~~~~-g~t~Lh~A~~~a~~g~~~~v~~Ll~----~ga~vn~~d 204 (497)
T 3lvq_E 131 PEPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAP-EELVLHLAVKVANQASLPLVDFIIQ----NGGHLDAKA 204 (497)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHHHT-TCCSSSCBCCSSSCCS-CBCHHHHHHHTCCTTTHHHHHHHHH----HSCCTTCCC
T ss_pred ccHHHHHHHHhccCHHHHHHHHhh-cccccCCCCCcccccc-cchHHHHHHHhcccccHHHHHHHHH----cCCCCCccC
Confidence 345779999999999999998855 5667655 544 9999999965 889999999998 578899999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCcccc
Q 011578 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 151 (482)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~ 151 (482)
..|+||||+||..|+.+++++|+++|++++.+|.+|+||||+|+ ..|+.+++++|+++|++++..
T Consensus 205 ~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~----~~~~~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 205 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR----KKHHKECEELLEQAQAGTFAF 269 (497)
T ss_dssp SSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHH----HTTCHHHHHHHHHTCC-----
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HcCCHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999999999 888999999999999998874
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=3e-27 Score=198.64 Aligned_cols=131 Identities=24% Similarity=0.287 Sum_probs=69.9
Q ss_pred CccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccC-
Q 011578 39 LLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN- 117 (482)
Q Consensus 39 ~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~- 117 (482)
+++..+.. |.||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+. |+.+++++|+++|++++.+|..
T Consensus 4 ~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~ 77 (136)
T 1d9s_A 4 GIHMLGGS-SDAGLATAAARGQVETVRQLLE----AGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPAT 77 (136)
T ss_dssp CCSCCCCC-CSCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTT
T ss_pred CccCCCCC-CccHHHHHHHcCCHHHHHHHHH----cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCC
Confidence 34444443 5555555555555555555555 344555555555555555555 5555555555555555555555
Q ss_pred CCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhH
Q 011578 118 GMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 180 (482)
Q Consensus 118 g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~ 180 (482)
|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|+
T Consensus 78 g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~-~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 78 LTRPVHDAA----REGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE-EQGHRDIARYLHAATG 135 (136)
T ss_dssp TBCHHHHHH----HHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHH-HHTCHHHHHHHHHHHC
T ss_pred CCCHHHHHH----HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH-HcCCHHHHHHHHHcCC
Confidence 555555555 445555555555555555555555555553332 2344555555555443
No 82
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.93 E-value=2.3e-26 Score=232.10 Aligned_cols=166 Identities=29% Similarity=0.395 Sum_probs=136.3
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChH
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP 88 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tp 88 (482)
.+..|.||||+|+..|+.+.++.|+. .+.+++..+.. |.||||+|+..|+.+++++|++ .+++++..|..|.||
T Consensus 208 ~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~ 281 (437)
T 1n11_A 208 PAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSANAESVQ-GVTPLHLAAQEGHAEMVALLLS----KQANGNLGNKSGLTP 281 (437)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTCCCH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCC-CCCHHHHHHHCCCHHHHHHHHh----cCCCCCCCCCCCCCH
Confidence 34567788888888888888887774 45567777665 8888888888888888888888 577788888888999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCC
Q 011578 89 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 168 (482)
Q Consensus 89 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~ 168 (482)
||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|+++|+++|.+|..|+||||+|+ ..++
T Consensus 282 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~-~~g~ 356 (437)
T 1n11_A 282 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS----HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAA-QQGH 356 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHH----HSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHH-HTTC
T ss_pred HHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHH----HcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHH-HCCh
Confidence 99999999999999999999999888889999999998 778889999999999999999999999995554 4667
Q ss_pred hHHHHHHHhhhHHHHHH
Q 011578 169 AKLRELLLWHSEEQRKR 185 (482)
Q Consensus 169 ~~~~~lL~~~~~~~~~~ 185 (482)
.+++++|+++|++++.+
T Consensus 357 ~~iv~~Ll~~ga~~~~~ 373 (437)
T 1n11_A 357 TDIVTLLLKNGASPNEV 373 (437)
T ss_dssp HHHHHHHHHTTCCSCCC
T ss_pred HHHHHHHHHCcCCCCCC
Confidence 88888888888876543
No 83
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.93 E-value=2.6e-26 Score=217.32 Aligned_cols=171 Identities=25% Similarity=0.223 Sum_probs=124.5
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC------
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ------ 81 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~------ 81 (482)
..+..|.||||+|+..|+.++++.|+. .+.+++..+.. |+||||+|+..|+.+++++|+++ +++++..
T Consensus 67 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~~~~ 140 (285)
T 1wdy_A 67 LRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNECDFY-GFTAFMEAAVYGKVKALKFLYKR----GANVNLRRKTKED 140 (285)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTT-CCBHHHHHHHTTCHHHHHHHHHT----TCCTTCCCCCCHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCcc-cCCHHHHHHHhCCHHHHHHHHHh----CCCcccccccHHH
Confidence 345678888888888888888888774 46667777765 88888888888888888888884 5555555
Q ss_pred ----cCCCChHHHHHHHcCCHHHHHHHHhC-CCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCC
Q 011578 82 ----NMYGETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGK 156 (482)
Q Consensus 82 ----~~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~ 156 (482)
+..|.||||+|+..|+.+++++|++. |++++..|..|+||||+|+..+......+++++|+++|++++.+|..|+
T Consensus 141 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~ 220 (285)
T 1wdy_A 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220 (285)
T ss_dssp HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSC
T ss_pred HHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCC
Confidence 67788888888888888888888876 7888888888888888887322111227788888888888888888888
Q ss_pred ChhhhhhcCCCChHHHHHHHh-hhHHHHHH
Q 011578 157 TPLDHLSNGPGSAKLRELLLW-HSEEQRKR 185 (482)
Q Consensus 157 tpl~~~a~~~~~~~~~~lL~~-~~~~~~~~ 185 (482)
||||+|+. .++.+++++|++ +|++.+.+
T Consensus 221 t~L~~A~~-~~~~~~v~~Ll~~~g~~~~~~ 249 (285)
T 1wdy_A 221 TPLILAVE-KKHLGLVQRLLEQEHIEINDT 249 (285)
T ss_dssp CHHHHHHH-TTCHHHHHHHHHSSSCCTTCC
T ss_pred cHHHHHHH-cCCHHHHHHHHhccCCCcccc
Confidence 88854444 456666666665 66654433
No 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=1e-26 Score=195.28 Aligned_cols=130 Identities=20% Similarity=0.226 Sum_probs=121.9
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCC-C
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY-G 85 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-g 85 (482)
...+..|.||||+|+..|+.+.++.|++. +.+++..+.. |+||||+|+. |+.+++++|++ .+++++.+|.. |
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~-~~~~~v~~Ll~----~g~~~~~~~~~~g 78 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRF-GRRPIQVMMM-GSAQVAELLLL----HGAEPNCADPATL 78 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT-CCTTTTTSTT-SCHHHHHHHHH----HTCCSSCCBTTTT
T ss_pred cCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCcCCC-CCCHHHHHHc-CCHHHHHHHHH----CCCCCCCcCCCCC
Confidence 45677899999999999999999999955 6778888876 9999999999 99999999999 68889999999 9
Q ss_pred ChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCC
Q 011578 86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147 (482)
Q Consensus 86 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad 147 (482)
+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|+|
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~----~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE----EQGHRDIARYLHAATGD 136 (136)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHH----HHTCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH----HcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999 78899999999999986
No 85
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.93 E-value=2.4e-26 Score=223.85 Aligned_cols=162 Identities=19% Similarity=0.194 Sum_probs=142.9
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCc----HHHHHHHHcCCCCCCcccccCcCC
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK----AEIVKSLLEWPGNDKVELEAQNMY 84 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~~~~ 84 (482)
.+..|.||||+||..|+.++|+.||.+.+.++|..+.. |.||||+++..++ ..++++|++ .|+++|.+|..
T Consensus 164 ~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~-g~t~l~~~~~~~~~~~~~~i~~lLl~----~gad~n~~d~~ 238 (337)
T 4g8k_A 164 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM-GRNALIHALLSSDDSDVEAITHLLLD----HGADVNVRGER 238 (337)
T ss_dssp CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTT-SCCHHHHHHHHSCTTTHHHHHHHHHH----TTCCTTCCCGG
T ss_pred ccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCC-CCcHHHHHHHHcCcccHHHHHHHHHH----CCCCCCCcCCC
Confidence 44568999999999999999999998889999999987 9999998876543 568899999 68889999999
Q ss_pred CChHHHHHHHcCCHHHHHHHHhC-CCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhh
Q 011578 85 GETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 163 (482)
Q Consensus 85 g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a 163 (482)
|+||||+|+..|+.+++++|++. |++++.+|.+|+||||+|+ ..|+.++|++|+++|+|+|.+ +||| .|
T Consensus 239 g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~----~~g~~~iv~~Ll~~GAd~n~~-----~~L~-~A 308 (337)
T 4g8k_A 239 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV----ELKLKKIAELLCKRGASTDCG-----DLVM-TA 308 (337)
T ss_dssp GCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHH----HTTCHHHHHHHHTTSCSSTTC-----CHHH-HH
T ss_pred CCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCC-----CHHH-HH
Confidence 99999999999999999999985 8999999999999999999 889999999999999999864 5995 45
Q ss_pred cCCCChHHHHHHHhhhHHHHHH
Q 011578 164 NGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 164 ~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
...++.+++++|+++|++++..
T Consensus 309 ~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 309 RRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp HHTTCHHHHHHHHHTTCCC---
T ss_pred HHcCCHHHHHHHHHCcCCCCCC
Confidence 5567889999999999987644
No 86
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.93 E-value=1.9e-26 Score=227.68 Aligned_cols=175 Identities=19% Similarity=0.219 Sum_probs=148.0
Q ss_pred cccc-ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC
Q 011578 3 KNQD-RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (482)
Q Consensus 3 ~~~~-~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (482)
.|.+ ...+..|.||||+||..|+.++|+.||. .+.+++..+.. |.||||+|+..|+.+++++|++++. .+++++..
T Consensus 155 ~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~ 231 (373)
T 2fo1_E 155 AGADVNAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPTIYNKS-ERSALHQAAANRDFGMMVYMLNSTK-LKGDIEEL 231 (373)
T ss_dssp TCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTT-CCCHHHHHHHTTCHHHHHHHTTSHH-HHHTTSCC
T ss_pred cCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHH-CCCCCcccCCC-CCCHHHHHHHCCCHHHHHHHHhcCc-cccChhhc
Confidence 3433 3456789999999999999999999885 57778888876 9999999999999999999998411 12788999
Q ss_pred cCCCChHHHHHHHcC---CHHHHHHHHhCCCCccc--------cccCCCcceeeehhhccCCChHHHHHHHhhCC-CCcc
Q 011578 82 NMYGETPLHMAAKNG---CNEAAKLLLAHGAFIEA--------KANNGMTPLHLSVWYSIRSEDYATVKTLLEYN-ADCS 149 (482)
Q Consensus 82 ~~~g~tpLh~A~~~g---~~~~v~~Ll~~ga~~~~--------~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~g-ad~~ 149 (482)
|..|.||||+|+..+ +.+++++|+++|++++. .|..|+||||+|+ ..|+.+++++|+++| ++++
T Consensus 232 d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~----~~g~~~~v~~Ll~~~~~~~n 307 (373)
T 2fo1_E 232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA----QVSNMPIVKYLVGEKGSNKD 307 (373)
T ss_dssp CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHH----SSCCHHHHHHHHHHSCCCTT
T ss_pred CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHH----HhCCHHHHHHHHHhcCCCcc
Confidence 999999999999988 89999999999999886 5678999999999 889999999999775 9999
Q ss_pred ccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHH
Q 011578 150 AKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 150 ~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
.+|..|+||||+|+ ..++.+++++|+++|++.+.+
T Consensus 308 ~~d~~g~TpL~~A~-~~g~~~iv~~Ll~~gad~~~~ 342 (373)
T 2fo1_E 308 KQDEDGKTPIMLAA-QEGRIEVVMYLIQQGASVEAV 342 (373)
T ss_dssp CCCTTCCCHHHHHH-HHTCHHHHHHHHHTTCCSSCC
T ss_pred CcCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCccCC
Confidence 99999999995554 467888899999988876544
No 87
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.93 E-value=4.4e-26 Score=225.15 Aligned_cols=165 Identities=18% Similarity=0.220 Sum_probs=145.3
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCC--CCccCCCCCCCChHHHHHHhCC---cHHHHHHHHcCCCCCCccccc-
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENP--SLLNERNPVMAQTPLHVSAGYN---KAEIVKSLLEWPGNDKVELEA- 80 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~--~~~~~~~~~~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~- 80 (482)
...+..|.||||+|+..|+.++++.|+..+. .+++..+.. |+||||+|+..+ +.+++++|+++ +++++.
T Consensus 193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~-g~t~L~~A~~~~~~~~~~~v~~Ll~~----g~~~~~~ 267 (373)
T 2fo1_E 193 TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN-GMTALMIVAHNEGRDQVASAKLLVEK----GAKVDYD 267 (373)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTT-SCCHHHHHHHSCSTTHHHHHHHHHHH----TCCSSCC
T ss_pred cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCC-CCCHHHHHHHhCCcchHHHHHHHHHC----CCCcccc
Confidence 3456789999999999999999999986532 577888876 999999999998 89999999995 555554
Q ss_pred -------CcCCCChHHHHHHHcCCHHHHHHHHhCC-CCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccC
Q 011578 81 -------QNMYGETPLHMAAKNGCNEAAKLLLAHG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 152 (482)
Q Consensus 81 -------~~~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d 152 (482)
.|..|.||||+|+..|+.++|++|++++ ++++.+|..|+||||+|+ ..|+.+++++|+++|++++.+|
T Consensus 268 ~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~----~~g~~~iv~~Ll~~gad~~~~d 343 (373)
T 2fo1_E 268 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA----QEGRIEVVMYLIQQGASVEAVD 343 (373)
T ss_dssp SGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHH----HHTCHHHHHHHHHTTCCSSCCC
T ss_pred cccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCccCCC
Confidence 6779999999999999999999999876 999999999999999999 8889999999999999999999
Q ss_pred CCCCChhhhhhcCCCChHHHHHHHhhhHH
Q 011578 153 NEGKTPLDHLSNGPGSAKLRELLLWHSEE 181 (482)
Q Consensus 153 ~~g~tpl~~~a~~~~~~~~~~lL~~~~~~ 181 (482)
..|+||||+ |...++.+++++|.+++++
T Consensus 344 ~~g~t~l~~-A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 344 ATDHTARQL-AQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp SSSCCHHHH-HHHTTCHHHHHHHHTTC--
T ss_pred CCCCCHHHH-HHHcCCHHHHHHHHhcCcc
Confidence 999999955 5557889999999988865
No 88
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.93 E-value=6.2e-26 Score=228.94 Aligned_cols=160 Identities=28% Similarity=0.339 Sum_probs=146.6
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||.|+..|+.+.|+.|+. .+.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+|
T Consensus 240 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t 313 (437)
T 1n11_A 240 AESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNLGNKS-GLTPLHLVAQEGHVPVADVLIK----HGVMVDATTRMGYT 313 (437)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHH----HTCCTTCCCSSCCC
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHh-cCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHh----CCccCCCCCCCCCC
Confidence 455679999999999999999999985 56778888876 9999999999999999999999 58889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~ 167 (482)
|||+|+..|+.++|++|+++|+++|.+|..|+||||+|+ ..|+.+++++|+++|++++.+|.+|.||+++ |...+
T Consensus 314 ~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~----~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~-A~~~g 388 (437)
T 1n11_A 314 PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAA----QQGHTDIVTLLLKNGASPNEVSSDGTTPLAI-AKRLG 388 (437)
T ss_dssp HHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCSCCCCSSSCCHHHH-HHHTT
T ss_pred HHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHH----HCChHHHHHHHHHCcCCCCCCCCCCCCHHHH-HHHcC
Confidence 999999999999999999999999999999999999999 8899999999999999999999999999955 45567
Q ss_pred ChHHHHHHHhh
Q 011578 168 SAKLRELLLWH 178 (482)
Q Consensus 168 ~~~~~~lL~~~ 178 (482)
+..++++|...
T Consensus 389 ~~~~~~~l~~~ 399 (437)
T 1n11_A 389 YISVTDVLKVV 399 (437)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHhc
Confidence 78888888754
No 89
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.93 E-value=3.7e-26 Score=199.98 Aligned_cols=142 Identities=19% Similarity=0.199 Sum_probs=126.9
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.||||+||..|+.++|+.|++. +.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+
T Consensus 30 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~ 103 (172)
T 3v30_A 30 NKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAKE-RESALSLASTGGYTDIVGLLLE----RDVDINIYDWNGG 103 (172)
T ss_dssp GCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTSC
T ss_pred cCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhhccc-CCCHHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCC
Confidence 44567899999999999999999999965 6778888876 9999999999999999999999 5788999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCCh
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTP 158 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tp 158 (482)
||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|+++..++..|.||
T Consensus 104 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~----~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 104 TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV----ALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HHTCHHHHHHHHHHHHHHSCC-------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH----HhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 9999999999999999999999999999999999999999 8889999999999999999999999887
No 90
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.93 E-value=1.7e-25 Score=225.03 Aligned_cols=233 Identities=22% Similarity=0.300 Sum_probs=177.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.++..+.+....+. .+.....++...+.+++|+||||||||++|++||+++.. +|+.++
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~----~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-------~~i~i~ 96 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLK----NPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITAS 96 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHH----CGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-------CEEEEE
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhh----chhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEe
Confidence 468899999999999998765442 233444555666788999999999999999999998753 899999
Q ss_pred cccccccccccchhhHHHHHHhcCC---cEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcCC----cEEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDGG----KVVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~~---~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~~----~~~vi~~~ 352 (482)
++++...++|.....++.+|+.+.. +|+||||+|.+...++.. .++...+.+++|+..|+++ .+++++++
T Consensus 97 g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAat 176 (499)
T 2dhr_A 97 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 176 (499)
T ss_dssp GGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECC
T ss_pred hhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEec
Confidence 9999999999988889999998753 899999999998877632 3445568889999999852 34555555
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+.... .+|++++ ||+..|.|+.|+.++|.+|++.+++.. .+..+++...+ +.. |
T Consensus 177 n~p~~-----LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~---------~l~~dv~l~~l---A~~-t------ 232 (499)
T 2dhr_A 177 NRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLALL---AKR-T------ 232 (499)
T ss_dssp SCGGG-----SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS---------CCCCSSTTHHH---HTT-S------
T ss_pred CChhh-----cCcccccccccceEEecCCCCHHHHHHHHHHHHhcC---------CCChHHHHHHH---HHh-c------
Confidence 44433 3899887 999999999999999999999876532 33444443333 322 2
Q ss_pred ccC-cchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHh
Q 011578 431 EMN-GGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 431 ~~~-~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~ 479 (482)
+|+ +|+|++++++|...+..+ ....|+.+||.+|++++.+
T Consensus 233 ~G~~gadL~~lv~~Aa~~A~~~---------~~~~It~~dl~~al~~v~~ 273 (499)
T 2dhr_A 233 PGFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAADRVMM 273 (499)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTT---------CCSSCCSHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHh---------CCCccCHHHHHHHHHHHhc
Confidence 444 599999999998765322 2246999999999998754
No 91
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.93 E-value=5.6e-26 Score=221.87 Aligned_cols=137 Identities=31% Similarity=0.407 Sum_probs=128.0
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh 90 (482)
..+.++||.||..|+.+.|+.+|...+.+++..+.. |+||||+|+..|+.++|++|++ .|++++.+|..|+||||
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~ 96 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGR-KSTPLHLAAGYNRVRIVQLLLQ----HGADVHAKDKGGLVPLH 96 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHH
T ss_pred cccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCcHHH
Confidence 346799999999999999999998888999999886 9999999999999999999999 57889999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCC
Q 011578 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGK 156 (482)
Q Consensus 91 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~ 156 (482)
+|+..|+.+++++|+++|++++..|..|+||||+|+ ..|+.+++++|+++|++++..+..|.
T Consensus 97 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~ 158 (351)
T 3utm_A 97 NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAA----SKNRVEVCSLLLSHGADPTLVNCHGK 158 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCccccCCCC
Confidence 999999999999999999999999999999999999 88999999999999999987765443
No 92
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=207.53 Aligned_cols=168 Identities=21% Similarity=0.177 Sum_probs=148.3
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC-cCCCC
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMYGE 86 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~ 86 (482)
..++.+.|+||.|+..|+.+.++.|++. +.+++..+.. |.||||+|+..|+.+++++|+++ +.+++.. +..|.
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~----~~~~~~~~~~~~~ 77 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQPDKE-NVTLLHWAAINNRIDLVKYYISK----GAIVDQLGGDLNS 77 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCBTTTTB
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHc-CCCcCCCCCC-CCCHHHHHHHhCCHHHHHHHHHc----CCcchhhcCCcCC
Confidence 3466788999999999999999999954 5778888876 99999999999999999999994 5555544 45599
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 166 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~ 166 (482)
||||+|+..|+.+++++|+++|++++.+|..|.||||+|+ ..|+.+++++|+++|++++.+|..|.||||+++..+
T Consensus 78 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~----~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~ 153 (240)
T 3eu9_A 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA----QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRT 153 (240)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHC
T ss_pred ChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH----HcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhC
Confidence 9999999999999999999999999999999999999999 888999999999999999999999999998888777
Q ss_pred CChHHHHHHHhhhHHHHHH
Q 011578 167 GSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 167 ~~~~~~~lL~~~~~~~~~~ 185 (482)
+...+.++|...+++.+..
T Consensus 154 ~~~~~~~~L~~~~~~~~~~ 172 (240)
T 3eu9_A 154 HSVDPTRLLLTFNVSVNLG 172 (240)
T ss_dssp CSSTTHHHHHHTTCCTTCC
T ss_pred ChHHHHHHHHhcCCCcchh
Confidence 7788999999888775544
No 93
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.93 E-value=1.5e-25 Score=212.07 Aligned_cols=166 Identities=25% Similarity=0.279 Sum_probs=149.6
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHH
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpL 89 (482)
+..|.||||+||..|+.++++.|+. .+.+++..+.. |.||||+|+..|+.+++++|++ .+++++.+|..|.|||
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L 109 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLR-HGADPVLRKKN-GATPFLLAAIAGSVKLLKLFLS----KGADVNECDFYGFTAF 109 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHH----TTCCTTCBCTTCCBHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCcccCCHH
Confidence 5678999999999999999999995 46778888876 9999999999999999999999 5788999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCcccc----------ccCCCcceeeehhhccCCChHHHHHHHhhC-CCCccccCCCCCCh
Q 011578 90 HMAAKNGCNEAAKLLLAHGAFIEAK----------ANNGMTPLHLSVWYSIRSEDYATVKTLLEY-NADCSAKDNEGKTP 158 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll~~ga~~~~~----------d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~-gad~~~~d~~g~tp 158 (482)
|+|+..|+.+++++|+++|++++.. +..|.||||+|+ ..|+.+++++|++. |++++.+|..|.||
T Consensus 110 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~ 185 (285)
T 1wdy_A 110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA----EKGHVEVLKILLDEMGADVNACDNMGRNA 185 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHH----HHTCHHHHHHHHHTSCCCTTCCCTTSCCH
T ss_pred HHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHH----HcCCHHHHHHHHHhcCCCCCccCCCCCCH
Confidence 9999999999999999999999987 788999999999 88899999999987 99999999999999
Q ss_pred hhhhhcCCCC---hHHHHHHHhhhHHHHHH
Q 011578 159 LDHLSNGPGS---AKLRELLLWHSEEQRKR 185 (482)
Q Consensus 159 l~~~a~~~~~---~~~~~lL~~~~~~~~~~ 185 (482)
||+++..+.. .+++++|.++|++.+.+
T Consensus 186 l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~ 215 (285)
T 1wdy_A 186 LIHALLSSDDSDVEAITHLLLDHGADVNVR 215 (285)
T ss_dssp HHHHHHCSCTTTHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHccccchHHHHHHHHHHcCCCCCCc
Confidence 9777765443 77889999998875543
No 94
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.93 E-value=1.6e-25 Score=206.48 Aligned_cols=169 Identities=19% Similarity=0.268 Sum_probs=139.6
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||.|+..|+.++++.|+..+.. ++......|+||||+|+..|+.+++++|++ .+++++.++..|.|
T Consensus 37 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t 111 (240)
T 3eu9_A 37 QPDKENVTLLHWAAINNRIDLVKYYISKGAI-VDQLGGDLNSTPLHWATRQGHLSMVVQLMK----YGADPSLIDGEGCS 111 (240)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBTTTTBCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCC
T ss_pred CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCc-chhhcCCcCCChhHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCC
Confidence 3456789999999999999999999966544 444443348999999999999999999999 57888889999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCC-CCCChhhhhhcCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN-EGKTPLDHLSNGP 166 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~-~g~tpl~~~a~~~ 166 (482)
|||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+ .+..+++++|++.|++++..+. .|.||||+|+ ..
T Consensus 112 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~---~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~-~~ 187 (240)
T 3eu9_A 112 CIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR---THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAV-LA 187 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH---CCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHH-HH
T ss_pred HHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHh---CChHHHHHHHHhcCCCcchhhccCCCcHHHHHH-Hc
Confidence 99999999999999999999999999999999999999832 2237888888999999988887 8889995444 45
Q ss_pred CChHHHHHHHhhhHHHHHH
Q 011578 167 GSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 167 ~~~~~~~lL~~~~~~~~~~ 185 (482)
++.+++++|+++|++++.+
T Consensus 188 ~~~~~v~~Ll~~g~~~~~~ 206 (240)
T 3eu9_A 188 GNTTVISLLLEAGANVDAQ 206 (240)
T ss_dssp TCHHHHHHHHHHTCCTTCB
T ss_pred CCHHHHHHHHHcCCCCCCc
Confidence 6778888888888776544
No 95
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.92 E-value=1.6e-25 Score=218.01 Aligned_cols=172 Identities=24% Similarity=0.247 Sum_probs=147.6
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCC---------CCCCChHHHHHHhCCcHHHHHHHHcCCCCCCccc
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERN---------PVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL 78 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~---------~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~ 78 (482)
..+..|.||||+|+..|+.+.++.++.. +.+++... ...|.||||+|+..|+.++|++||++ .|+++
T Consensus 120 ~~d~~g~t~l~~A~~~~~~~~~~~ll~~-ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~---~gad~ 195 (337)
T 4g8k_A 120 ECDFYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE---MGADV 195 (337)
T ss_dssp CBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHH---SCCCT
T ss_pred hhccCCCCHHHHHHHcCcHHHHHHHHHc-CCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhc---cCCCc
Confidence 4567899999999999999999998854 44454322 12389999999999999999999964 58899
Q ss_pred ccCcCCCChHHHHHHHcCC----HHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhC-CCCccccCC
Q 011578 79 EAQNMYGETPLHMAAKNGC----NEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-NADCSAKDN 153 (482)
Q Consensus 79 ~~~~~~g~tpLh~A~~~g~----~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~-gad~~~~d~ 153 (482)
+.+|..|.||||+++..+. ..++++|+++|+++|.+|.+|+||||+|+ ..|+.+++++|++. |++++.+|.
T Consensus 196 n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~----~~~~~~~v~~Ll~~~~~~vn~~d~ 271 (337)
T 4g8k_A 196 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV----EKKHLGLVQRLLEQEHIEINDTDS 271 (337)
T ss_dssp TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHH----HTTCHHHHHHHHTSTTCCTTCBCT
T ss_pred CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH----HhhhhHHHHHHHHhcCCcccCcCC
Confidence 9999999999999887544 46889999999999999999999999999 88999999999975 899999999
Q ss_pred CCCChhhhhhcCCCChHHHHHHHhhhHHHHHHhhH
Q 011578 154 EGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRAL 188 (482)
Q Consensus 154 ~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~~~ 188 (482)
+|+||||+| +..++.+++++|+++|++++.++++
T Consensus 272 ~G~TpL~~A-~~~g~~~iv~~Ll~~GAd~n~~~~L 305 (337)
T 4g8k_A 272 DGKTALLLA-VELKLKKIAELLCKRGASTDCGDLV 305 (337)
T ss_dssp TSCBHHHHH-HHTTCHHHHHHHHTTSCSSTTCCHH
T ss_pred CCCCHHHHH-HHcCCHHHHHHHHHCCCCCCCCCHH
Confidence 999999555 4567889999999999987765543
No 96
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=6.5e-26 Score=209.64 Aligned_cols=155 Identities=21% Similarity=0.165 Sum_probs=129.2
Q ss_pred CCccccccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCccccc
Q 011578 1 MQKNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 80 (482)
Q Consensus 1 ~~~~~~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 80 (482)
|+.|.+......+.||||.||..|+.+.|+.||. .+.++|..+.. |+||||+||..|+.+++++|++ .+++++.
T Consensus 25 l~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~ 98 (239)
T 1ycs_B 25 IAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLPNDE-GITALHNAVCAGHTEIVKFLVQ----FGVNVNA 98 (239)
T ss_dssp ------------CHHHHHHHHHHTCHHHHHHHTS-TTSSCCCCCTT-SCCHHHHHHHHTCHHHHHHHHH----HTCCTTC
T ss_pred hccCCCcccCchhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCc
Confidence 3456666777888999999999999999999985 45688999886 9999999999999999999999 5888999
Q ss_pred CcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCC-cceeee--hhhccCCChHHHHHHHhhCCCCcccc------
Q 011578 81 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGM-TPLHLS--VWYSIRSEDYATVKTLLEYNADCSAK------ 151 (482)
Q Consensus 81 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~-tpLh~A--~~~~~~~~~~~~v~~Ll~~gad~~~~------ 151 (482)
+|..|+||||+|+..|+.+++++|+++|++++.++..|. ||||+| + ..|+.+++++|+++|++++..
T Consensus 99 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~----~~g~~~~~~~Ll~~~a~~~~~~~~~~~ 174 (239)
T 1ycs_B 99 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEM----EEGYTQCSQFLYGVQEKMGIMNKGVIY 174 (239)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSS----STTCCCHHHHHHHHHHHTTTTGGGEEE
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHh----hhccHHHHHHHHHhhhcccccccceEE
Confidence 999999999999999999999999999999999998887 999999 6 788999999999999998876
Q ss_pred ---CCCCCChhhhhhcC
Q 011578 152 ---DNEGKTPLDHLSNG 165 (482)
Q Consensus 152 ---d~~g~tpl~~~a~~ 165 (482)
+..+.+|++++...
T Consensus 175 al~d~~~~~~~eLa~~~ 191 (239)
T 1ycs_B 175 ALWDYEPQNDDELPMKE 191 (239)
T ss_dssp ESSCBCCSSTTBCCBCS
T ss_pred EEeccCCCCCCcccccC
Confidence 55577777444443
No 97
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=1.8e-25 Score=187.73 Aligned_cols=125 Identities=28% Similarity=0.366 Sum_probs=81.9
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh 90 (482)
..+.||||+||..|+.+.++.|+.. +.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+||||
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~t~L~ 85 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEY-GLTPLYLATAHGHLEIVEVLLK----NGADVNAVDAIGFTPLH 85 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHH
Confidence 4456666666666666666666643 4556666554 6666666666666666666666 45566666666666666
Q ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCC
Q 011578 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN 145 (482)
Q Consensus 91 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~g 145 (482)
+|+..|+.+++++|+++|++++.+|.+|+||||+|+ ..|+.+++++|+++|
T Consensus 86 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~----~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 86 LAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI----GNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHH----HCCCHHHHHHHHHcC
Confidence 666666666666666666666666666666666666 566666666666654
No 98
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.92 E-value=7.9e-25 Score=192.89 Aligned_cols=139 Identities=22% Similarity=0.271 Sum_probs=129.1
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.||||+||..|+.++++.|+.. +.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|.
T Consensus 33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~ 106 (179)
T 3f6q_A 33 NQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRG-DDTPLHLAASHGHRDIVQKLLQ----YKADINAVNEHGN 106 (179)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSC
T ss_pred cccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCC
Confidence 34567899999999999999999999954 7788888876 9999999999999999999999 5788999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG 155 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g 155 (482)
||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|++++..+..+
T Consensus 107 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~----~~~~~~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 107 VPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK----APLRELLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSC----HHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHH----HHHHHHHHHHHHHhhcCcccCCccc
Confidence 9999999999999999999999999999999999999999 8889999999999999999877654
No 99
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=4.4e-25 Score=182.18 Aligned_cols=126 Identities=40% Similarity=0.563 Sum_probs=96.5
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHH
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~ 91 (482)
+|.||||.|+..|+.+.++.|+.. +.+++..+.. |.||||+|+..|+.+++++|++ .+++++.+|..|.||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~l~~ 74 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKN-GRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHL 74 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCC-CCcHHHHHHHcCcHHHHHHHHH----cCCCCcccCCCCCcHHHH
Confidence 367788888888888888877754 4556666665 7788888888888888888887 466777777778888888
Q ss_pred HHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCC
Q 011578 92 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147 (482)
Q Consensus 92 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad 147 (482)
|+..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|+|
T Consensus 75 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~----~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 75 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA----RNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHHTCC
T ss_pred HHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHH----HcCcHHHHHHHHHcCCC
Confidence 88888888888888888888777778888888887 67778888888877775
No 100
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.92 E-value=3.9e-25 Score=185.87 Aligned_cols=128 Identities=27% Similarity=0.316 Sum_probs=67.5
Q ss_pred cccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCC
Q 011578 6 DRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG 85 (482)
Q Consensus 6 ~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g 85 (482)
|...+..|.||||+||..|+.+.++.|+. .+.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|
T Consensus 3 d~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g 76 (137)
T 3c5r_A 3 DPFTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHA-GWTPLHEACNHGHLKVVELLLQ----HKALVNTTGYQN 76 (137)
T ss_dssp -CCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCGGG
T ss_pred CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCcccCcCCCC
Confidence 33445555555555555555555555553 24444554443 5555555555555555555555 344555555555
Q ss_pred ChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhh
Q 011578 86 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 143 (482)
Q Consensus 86 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~ 143 (482)
+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+ ..+..+++.+|.+
T Consensus 77 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~----~~~~~~~l~~l~~ 130 (137)
T 3c5r_A 77 DSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD----DESMKSLLLLPEK 130 (137)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCC----CHHHHHHHSCC--
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh----hccHHHHHhhccc
Confidence 55555555555555555555555555555555555555555 4444444444443
No 101
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.92 E-value=1.5e-25 Score=188.48 Aligned_cols=128 Identities=27% Similarity=0.330 Sum_probs=112.8
Q ss_pred CCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcc
Q 011578 42 ERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTP 121 (482)
Q Consensus 42 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tp 121 (482)
..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus 5 ~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 79 (137)
T 3c5r_A 5 FTNHR-GETLLHIASIKGDIPSVEYLLQ----NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP 79 (137)
T ss_dssp CCCTT-CCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred CcCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence 34444 9999999999999999999999 578899999999999999999999999999999999999999999999
Q ss_pred eeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhh
Q 011578 122 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 179 (482)
Q Consensus 122 Lh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~ 179 (482)
||+|+ ..|+.+++++|+++|++++.+|..|.||+| .|...+..++..+|.+.+
T Consensus 80 L~~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~-~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 80 LHDAA----KNGHVDIVKLLLSYGASRNAVNIFGLRPVD-YTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCGGG-GCCCHHHHHHHSCC----
T ss_pred HHHHH----HcCCHHHHHHHHHcCCCCCCCCCCCCCHHH-HHhhccHHHHHhhccccc
Confidence 99999 889999999999999999999999999995 455556666666665544
No 102
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=2.5e-25 Score=186.83 Aligned_cols=124 Identities=31% Similarity=0.419 Sum_probs=115.0
Q ss_pred CCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeeh
Q 011578 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 126 (482)
Q Consensus 47 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~ 126 (482)
.|.||||+||..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMA----NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred cccHHHHHHHHhCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 38899999999999999999999 57889999999999999999999999999999999999999999999999999
Q ss_pred hhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhh
Q 011578 127 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 179 (482)
Q Consensus 127 ~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~ 179 (482)
..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|
T Consensus 89 ----~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~-~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 ----FIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI-GNGNEDLAEILQKLN 136 (136)
T ss_dssp ----HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHC-
T ss_pred ----HcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHH-HCCCHHHHHHHHHcC
Confidence 788999999999999999999999999995555 567788999988765
No 103
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.92 E-value=2.7e-24 Score=186.68 Aligned_cols=129 Identities=27% Similarity=0.350 Sum_probs=117.8
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.||||+||..|+.++++.|+. .+.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+
T Consensus 36 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~ 109 (165)
T 3twr_A 36 RDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKG-GLVPLHNACSYGHYEVAELLVK----HGAVVNVADLWKF 109 (165)
T ss_dssp CCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCC
T ss_pred cccccCCCCHHHHHHHcChHHHHHHHHh-cCCCCCccCCC-CCCHHHHHHHcCcHHHHHHHHh----CCCCCCCcCCCCC
Confidence 3445678899999999999999999995 46778888886 9999999999999999999999 6888999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 146 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~ga 146 (482)
||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+ . ++.+++++|+++|+
T Consensus 110 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~----~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 110 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK----D-GDTDIQDLLRGDAA 164 (165)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSC----T-TCHHHHHHHHTC--
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHh----c-CChHHHHHHhhccc
Confidence 9999999999999999999999999999999999999987 5 88999999999886
No 104
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.91 E-value=1.4e-24 Score=186.13 Aligned_cols=129 Identities=26% Similarity=0.341 Sum_probs=119.4
Q ss_pred ccccccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCc
Q 011578 3 KNQDRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN 82 (482)
Q Consensus 3 ~~~~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 82 (482)
.|.+...+..|.||||+|+..|+.+.++.|+. .+.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|
T Consensus 24 ~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~ 97 (153)
T 1awc_B 24 NGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDARTKV-DRTPLHMAASEGHANIVEVLLK----HGADVNAKD 97 (153)
T ss_dssp HTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHT----TTCCTTCCC
T ss_pred cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCC-CCCHHHHHHHcChHHHHHHHHH----cCCCCCCCC
Confidence 35555667889999999999999999999995 56778888876 9999999999999999999999 588899999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHH
Q 011578 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL 141 (482)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~L 141 (482)
..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|
T Consensus 98 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~----~~~~~~i~~~L 152 (153)
T 1awc_B 98 MLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISI----DNGNEDLAEIL 152 (153)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH----HcCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999 88999999987
No 105
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=7.3e-25 Score=180.87 Aligned_cols=126 Identities=44% Similarity=0.625 Sum_probs=117.5
Q ss_pred CCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeeh
Q 011578 47 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 126 (482)
Q Consensus 47 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~ 126 (482)
+|+||||+|+..|+.+++++|++ .+++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHH----HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHH----cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Confidence 38999999999999999999999 57889999999999999999999999999999999999999999999999999
Q ss_pred hhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHH
Q 011578 127 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 181 (482)
Q Consensus 127 ~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~ 181 (482)
..++.+++++|+++|++++.+|..|+||||+ |...++.+++++|+++|++
T Consensus 77 ----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~-A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 77 ----RNGHLEVVKLLLEAGADVNAKDKNGRTPLHL-AARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp ----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHHHHHHHHHHTCC
T ss_pred ----HcChHHHHHHHHHcCCCCcccCCCCCCHHHH-HHHcCcHHHHHHHHHcCCC
Confidence 8889999999999999999999999999955 5556788999999988864
No 106
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=1.3e-25 Score=193.28 Aligned_cols=136 Identities=25% Similarity=0.301 Sum_probs=115.9
Q ss_pred CCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCc-c
Q 011578 43 RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMT-P 121 (482)
Q Consensus 43 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-p 121 (482)
.+.. |.||||+|+..|+.++|++|++ .+++++.+|..|+||||+|+ .|+.+++++|+++|++++.+|..|+| |
T Consensus 8 ~~~~-~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttp 81 (156)
T 1bi7_B 8 SMEP-SADWLATAAARGRVEEVRALLE----AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRP 81 (156)
T ss_dssp --CC-STTHHHHHHHHTCHHHHHHHHT----TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred CCcc-chHHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 3443 9999999999999999999999 57889999999999999985 99999999999999999999999999 9
Q ss_pred eeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHhhHh
Q 011578 122 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALE 189 (482)
Q Consensus 122 Lh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~~~~ 189 (482)
||+|+ ..|+.+++++|+++|++++.+|..|+||||+|+ ..++.+++++|+++|++...+....
T Consensus 82 L~~A~----~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~-~~~~~~~v~~Ll~~ga~~~~~~~~g 144 (156)
T 1bi7_B 82 VHDAA----REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE-ELGHRDVARYLRAAAGGTRGSNHAR 144 (156)
T ss_dssp HHHHH----HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHH-HHTCHHHHHHHSSCC----------
T ss_pred HHHHH----HCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH-HhCHHHHHHHHHHcCCCCCccCcCc
Confidence 99999 788999999999999999999999999995554 5678899999999999887765433
No 107
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.91 E-value=1.3e-24 Score=188.00 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=120.6
Q ss_pred cccc-ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC
Q 011578 3 KNQD-RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ 81 (482)
Q Consensus 3 ~~~~-~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 81 (482)
.|.+ ...+..|.||||+|+. |+.+.++.|+.. +.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+
T Consensus 27 ~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~ 99 (162)
T 1ihb_A 27 NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR-GANPDLKDRT-GFAVIHDAARAGFLDTLQTLLE----FQADVNIE 99 (162)
T ss_dssp SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCTTCC
T ss_pred CCCCccccCccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCCc
Confidence 3433 3446789999999999 999999999954 7778888876 9999999999999999999999 57889999
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhCCCC-ccccccCCCcceeeehhhccCCChHHHHHHHhhCCCC
Q 011578 82 NMYGETPLHMAAKNGCNEAAKLLLAHGAF-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147 (482)
Q Consensus 82 ~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad 147 (482)
|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+ ..|+.+++++|+++|||
T Consensus 100 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~----~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR----LYGRNEVVSLMQANGAG 162 (162)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTC--
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHH----HcCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999998 6999999999999999 88999999999999986
No 108
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.91 E-value=8.6e-25 Score=200.56 Aligned_cols=149 Identities=19% Similarity=0.204 Sum_probs=124.4
Q ss_pred HHHHHhhCCCCccCC--CCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHh
Q 011578 29 FQRLLRENPSLLNER--NPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 106 (482)
Q Consensus 29 v~~ll~~~~~~~~~~--~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~ 106 (482)
|+.||.++. +++.. ....|.||||+|+..|+.++|++|++ .+++++.+|..|+||||+||..|+.+++++|++
T Consensus 1 v~~ll~~~~-~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~ 75 (229)
T 2vge_A 1 MRSVLRKAG-SPRKARRARLNPLVLLLDAALTGELEVVQQAVK----EMNDPSQPNEEGITALHNAICGANYSIVDFLIT 75 (229)
T ss_dssp ----------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHH----HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CeehhccCC-CCccccccccchhHHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 355665543 33322 22348899999999999999999999 678899999999999999999999999999999
Q ss_pred CCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccC-CCCCChhhhh-hcCCCChHHHHHHHhhhHHHHH
Q 011578 107 HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPLDHL-SNGPGSAKLRELLLWHSEEQRK 184 (482)
Q Consensus 107 ~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d-~~g~tpl~~~-a~~~~~~~~~~lL~~~~~~~~~ 184 (482)
+|++++.+|..|+||||+|+ ..|+.+++++|+++|++++.++ ..|+||||+| +...++.+++++|++.|++.+.
T Consensus 76 ~ga~~n~~d~~g~tpLh~A~----~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~ 151 (229)
T 2vge_A 76 AGANVNSPDSHGWTPLHCAA----SCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGL 151 (229)
T ss_dssp TTCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccc
Confidence 99999999999999999999 8899999999999999999997 6999999655 1778899999999999988665
Q ss_pred Hh
Q 011578 185 RR 186 (482)
Q Consensus 185 ~~ 186 (482)
+.
T Consensus 152 ~~ 153 (229)
T 2vge_A 152 MN 153 (229)
T ss_dssp SG
T ss_pred cc
Confidence 54
No 109
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.91 E-value=5.7e-24 Score=185.53 Aligned_cols=128 Identities=30% Similarity=0.415 Sum_probs=119.1
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
..+..|.||||+||..|+.++++.|+. .+.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|.|
T Consensus 42 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t 115 (169)
T 2y1l_E 42 AEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDHA-GMTPLRLAALFGHLEIVEVLLK----NGADVNANDMEGHT 115 (169)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCC
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCC
Confidence 456789999999999999999999995 46778888876 9999999999999999999999 57889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN 145 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~g 145 (482)
|||+|+..|+.+++++|+++|++++.+|..|.||||+|+ ..|+.+++++|+++|
T Consensus 116 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~----~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 116 PLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI----DNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHTC-
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HhCCHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999 889999999999876
No 110
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.91 E-value=9.4e-24 Score=196.92 Aligned_cols=229 Identities=22% Similarity=0.307 Sum_probs=164.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|.+.++..+++....+..+........ ..+.+++|+||||||||++++++++.+.. +++.++
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~----~~~~g~ll~G~~G~GKTtl~~~i~~~~~~-------~~i~~~ 81 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGA----RIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITAS 81 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTC----CCCSEEEEECCTTSSHHHHHHHHHHHTTC-------CEEEEE
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCC----CCCCeEEEECCCCCCHHHHHHHHHHHhCC-------CEEEee
Confidence 3578899999999999987665543333333333 34567999999999999999999997753 788898
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcCC---c-EEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDGG---K-VVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~~---~-~~vi~~~ 352 (482)
+.++...+.|.....+..+|+.+. ++++||||+|.+...++.. ..+...+.+++++..|+++ + +++++++
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t 161 (254)
T 1ixz_A 82 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 161 (254)
T ss_dssp HHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEE
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEcc
Confidence 888877788887788888898764 4899999999998766431 2344567788999888763 3 3444444
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+.... .+|++++ ||+..++|+.|+.++|.+|++.+++.. .+..+++...++..+.
T Consensus 162 ~~p~~-----ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---------~~~~~~~~~~la~~~~--------- 218 (254)
T 1ixz_A 162 NRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLALLAKRTP--------- 218 (254)
T ss_dssp SCGGG-----SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS---------CBCTTCCHHHHHHTCT---------
T ss_pred CCchh-----CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC---------CCCcccCHHHHHHHcC---------
Confidence 33322 2899988 999999999999999999999887543 3334444443333222
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHH
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 474 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al 474 (482)
...++++++++++|...+..+ ....|+.+||++|+
T Consensus 219 G~~~~dl~~~~~~a~~~a~~~---------~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 219 GFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAA 253 (254)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHh---------cCCCcCHHHHHHHh
Confidence 345699999999998765322 12469999999886
No 111
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.91 E-value=1.5e-26 Score=217.84 Aligned_cols=234 Identities=19% Similarity=0.306 Sum_probs=168.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|++.+++.+.+.+..+..+......+ ...+.+++|+||||||||++|+++|+.+.. +++.+++
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~v~~ 77 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLG----AKIPKGVLLVGPPGTGKTLLAKAVAGEAHV-------PFFSMGG 77 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHS----CCCCSCCCCBCSSCSSHHHHHHHHHHHHTC-------CCCCCCS
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCC----CCCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEech
Confidence 46789999999999999877666555444433 345678999999999999999999998865 7788888
Q ss_pred ccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCC----ChhHHHHHHHHHhhhcC-----CcEEEEEe
Q 011578 284 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD----KDYGIEALEEIMSVMDG-----GKVVVIFA 351 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~----~~~~~~~~~~ll~~l~~-----~~~~vi~~ 351 (482)
+++...+.|.+...++.+|+.+. ++||||||+|.+..+++.++ +....++++.|+..+++ ..++||++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~t 157 (268)
T 2r62_A 78 SSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAA 157 (268)
T ss_dssp CTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEEC
T ss_pred HHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEe
Confidence 88888888888777777777654 49999999999988653211 11122456778888865 34677777
Q ss_pred cCchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc
Q 011578 352 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 429 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 429 (482)
++.... .+|++.+ ||+..+.|+.|+.++|.+|++.+++... +..+++.+.++.++
T Consensus 158 tn~~~~-----ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~---------~~~~~~~~~la~~~--------- 214 (268)
T 2r62_A 158 TNRPEI-----LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVK---------LANDVNLQEVAKLT--------- 214 (268)
T ss_dssp BSCCTT-----SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSC---------CCSSCCTTTTTSSS---------
T ss_pred cCCchh-----cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCC---------CCCccCHHHHHHHc---------
Confidence 654432 2788887 9999999999999999999999887542 22233333333322
Q ss_pred cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHHhc
Q 011578 430 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 430 ~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
....++++++++++|...+.. .....|+.+|+.+|++.+.|.
T Consensus 215 ~g~~g~dl~~l~~~a~~~a~~---------~~~~~i~~~~~~~a~~~~~~~ 256 (268)
T 2r62_A 215 AGLAGADLANIINEAALLAGR---------NNQKEVRQQHLKEAVERGIAG 256 (268)
T ss_dssp CSSCHHHHHHHHHHHHHTTSS---------SCCCSCCHHHHHTSCTTCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHH---------hccCCcCHHHHHHHHHHHhhc
Confidence 234578999999998876521 122469999999988776553
No 112
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.91 E-value=3.3e-24 Score=176.63 Aligned_cols=107 Identities=27% Similarity=0.309 Sum_probs=72.4
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 127 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~ 127 (482)
|.||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 7 ~~~~l~~A~~~~~~~~v~~ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~- 81 (123)
T 3aaa_C 7 CDKEFMWALKNGDLDEVKDYVA----KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV- 81 (123)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHH----TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH-
T ss_pred cchHHHHHHHcCCHHHHHHHHH----cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH-
Confidence 5666777777777777766666 35566666666667777777766677777777666666666666677777666
Q ss_pred hccCCChHHHHHHHhhCCCCccccCCCCCChhhhh
Q 011578 128 YSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL 162 (482)
Q Consensus 128 ~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~ 162 (482)
..++.+++++|+++|++++.+|..|+||+|+|
T Consensus 82 ---~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 82 ---YEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp ---HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred ---HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence 55666677777666666666666677776443
No 113
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.90 E-value=1.7e-25 Score=211.50 Aligned_cols=164 Identities=24% Similarity=0.287 Sum_probs=143.6
Q ss_pred CchHhHHHHHcCCHHHHHHHHhhCC-CCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCc-ccccCcCCCChHHH
Q 011578 13 KPATIHGCAQSGDLLAFQRLLRENP-SLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV-ELEAQNMYGETPLH 90 (482)
Q Consensus 13 ~~t~l~~a~~~g~~~~v~~ll~~~~-~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~~~~g~tpLh 90 (482)
..+++|.|+..|+.+.++.++.... ..+|..+.. |+||||+||..|+.++|++|+++ ++ +++..|..|+||||
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~-g~T~Lh~A~~~g~~~~v~~Ll~~----g~~~~~~~~~~g~tpL~ 150 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSN-GNTALHYSVSHANFPVVQQLLDS----GVCKVDKQNRAGYSPIM 150 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTT-SCCHHHHHHHTTCHHHHHHHHHT----SCCCTTCCCTTSCCHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCC-CCCHHHHHHHCCCHHHHHHHHHC----CCCcCCCCCCCCCCHHH
Confidence 3567899999999999998875432 236777776 99999999999999999999994 55 89999999999999
Q ss_pred HHH-----HcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcC
Q 011578 91 MAA-----KNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 165 (482)
Q Consensus 91 ~A~-----~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~ 165 (482)
+|+ ..++.+++++|++.|++++..|..|+||||+|+ ..|+.+++++|+++|+|+|.+|..|+||||+|+.
T Consensus 151 ~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~----~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~- 225 (276)
T 4hbd_A 151 LTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAV----SHGRVDVVKALLACEADVNVQDDDGSTALMCACE- 225 (276)
T ss_dssp HGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-
T ss_pred HHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHH----HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH-
Confidence 999 678899999999999999999999999999999 8899999999999999999999999999965554
Q ss_pred CCChHHHHHHHh-hhHHHHHHh
Q 011578 166 PGSAKLRELLLW-HSEEQRKRR 186 (482)
Q Consensus 166 ~~~~~~~~lL~~-~~~~~~~~~ 186 (482)
.++.+++++|+. .|++.+.+.
T Consensus 226 ~g~~~iv~~Ll~~~gad~~~~d 247 (276)
T 4hbd_A 226 HGHKEIAGLLLAVPSCDISLTD 247 (276)
T ss_dssp HTCHHHHHHHHTSTTCCTTCCC
T ss_pred CCCHHHHHHHHhcCCCCCcCcC
Confidence 567888888888 787765443
No 114
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.90 E-value=1.1e-24 Score=194.22 Aligned_cols=137 Identities=30% Similarity=0.333 Sum_probs=125.1
Q ss_pred CccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCC
Q 011578 39 LLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNG 118 (482)
Q Consensus 39 ~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g 118 (482)
.+|..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus 27 ~~n~~d~~-g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 101 (192)
T 2rfm_A 27 LRNYRDSY-NRTPLMVACMLGMENAIDKLVE----NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSG 101 (192)
T ss_dssp HHTCCCTT-CCCHHHHHHHHTCGGGHHHHHH----HHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTS
T ss_pred HHhCcCCC-CCCHHHHHHHcCCHHHHHHHHH----hccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence 35667765 9999999999999999999999 578899999999999999999999999999999999999999999
Q ss_pred CcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHH
Q 011578 119 MTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 185 (482)
Q Consensus 119 ~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~ 185 (482)
+||||+|+ ..++.+++++|+++|++++.+|..|.||||+|+. .++.+++++|+++|++...+
T Consensus 102 ~t~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~ga~~~~~ 163 (192)
T 2rfm_A 102 KTPLMWSI----IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASK-YGRSEIVKKLLELGADISAR 163 (192)
T ss_dssp CCHHHHHH----HHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHH-HTCHHHHHHHHHTTCCTTCB
T ss_pred CcHHHHHH----HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-cCCHHHHHHHHHCCCCCCCc
Confidence 99999999 7889999999999999999999999999955554 67888999999998876544
No 115
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.90 E-value=2.9e-24 Score=196.14 Aligned_cols=137 Identities=23% Similarity=0.270 Sum_probs=102.2
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh 90 (482)
..|.||||+||..|+.+.|+.||. .+.+++..+.. |+||||+||..|+.++|++|+++ .+++++.+|..|+||||
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~d~~g~tpL~ 145 (222)
T 3ehr_A 71 ESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLDKA-GSTALYWACHGGHKDIVEMLFTQ---PNIELNQQNKLGDTALH 145 (222)
T ss_dssp EEESCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHTTS---TTCCCCCCCTTSCCHHH
T ss_pred cccccccccccccCcHHHHHHHHh-CCCCccccCCC-CCCHHHHHHHcCCHHHHHHHHcC---CCCCccccCCCCCCHHH
Confidence 356788999999999988888885 46677877775 88999999999999999998883 37888888888899999
Q ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCC
Q 011578 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGK 156 (482)
Q Consensus 91 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~ 156 (482)
+|+..|+.+++++|+++|++++.+|.+|+||||+|+ ..++.++++.|++.|++.+..+..++
T Consensus 146 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~----~~~~~~~l~~l~~~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 146 AAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMAT----NAACASLLKKKQGTDAVRTLSNAEDY 207 (222)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCC----SHHHHHHHC-----------------
T ss_pred HHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhc----chhHHHHHHHHhccchhhhccchhhh
Confidence 999999999999999889988888888999999888 77888888888888888877776553
No 116
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=8.4e-24 Score=174.16 Aligned_cols=111 Identities=25% Similarity=0.280 Sum_probs=102.6
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHH
Q 011578 10 RSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPL 89 (482)
Q Consensus 10 ~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpL 89 (482)
.+.+.||||+|+..|+.+.++.|+.. +.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+|||
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~tpL 77 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEG-GRKPLHYAADCGQLEILEFLLL----KGADINAPDKHHITPL 77 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCCTT-SSCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTSCCHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCccCCC-CCcHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCHH
Confidence 46788999999999999999999954 6678888876 9999999999999999999999 5788999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeeh
Q 011578 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 126 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~ 126 (482)
|+|+..|+.+++++|+++|++++.+|.+|+||||+|+
T Consensus 78 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 78 LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 9999999999999999999999999999999999998
No 117
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=3.3e-24 Score=204.83 Aligned_cols=139 Identities=20% Similarity=0.221 Sum_probs=117.7
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccC------CCCCCCChHHHHHHhC---CcHHHHHHHHcCCCCCCcccccCc
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNE------RNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQN 82 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~------~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~ 82 (482)
...++||.|+..|+.+.|+.+|. .+.+++. .+.. |+||||+|+.. |+.+++++|++ .|+++|.+|
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~-~g~d~~~~~~~~~~~~~-g~t~Lh~A~~~~~~~~~~iv~~Ll~----~gadvn~~d 223 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFA-NGQDFGQPLPGPDAQAP-EELVLHLAVKVANQASLPLVDFIIQ----NGGHLDAKA 223 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCEECSSSCSC-EECHHHHHHHTCCTTTHHHHHHHHH----HSSCTTCCC
T ss_pred chHHHHhhhhhccCHHHHHHHHh-cCCcccccCCCcccCCC-CccHHHHHHHhcccCcHHHHHHHHh----cCCCCCCCC
Confidence 45678999999999999999984 4566766 3544 99999999987 89999999999 578899999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhh
Q 011578 83 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL 162 (482)
Q Consensus 83 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~ 162 (482)
..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+ ..++.+++++|+++|++ .|.||||+|
T Consensus 224 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~----~~~~~~iv~~Ll~~ga~------~g~tpLh~A 293 (301)
T 2b0o_E 224 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR----KKHHKECEELLEQAQAG------TFAFPLHVD 293 (301)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHH----HHTCHHHHHHHHHHHHH------TTSSCCC--
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HcCCHHHHHHHHHhcCC------CCCChhHHH
Confidence 99999999999999999999999999999999999999999999 78899999999999876 578999666
Q ss_pred hcCC
Q 011578 163 SNGP 166 (482)
Q Consensus 163 a~~~ 166 (482)
+..+
T Consensus 294 ~~~g 297 (301)
T 2b0o_E 294 YSWV 297 (301)
T ss_dssp ----
T ss_pred HhcC
Confidence 6544
No 118
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.90 E-value=3.1e-25 Score=214.96 Aligned_cols=165 Identities=21% Similarity=0.092 Sum_probs=135.4
Q ss_pred hHhHHHHHcCCHHHHHHHHhhCCCCccC-CCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHH
Q 011578 15 ATIHGCAQSGDLLAFQRLLRENPSLLNE-RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA 93 (482)
Q Consensus 15 t~l~~a~~~g~~~~v~~ll~~~~~~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~ 93 (482)
+.+|.|+..+..++++.|+ ..+.++|. .+.. |+||||+||..|+.++|++|++ .|++++.+|..|+||||+|+
T Consensus 99 ~~~~~a~~~~~~~~~~~l~-~~g~dvn~~~d~~-g~TpLh~Aa~~g~~~~v~~Ll~----~Gad~n~~d~~g~TpLh~A~ 172 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFP-NTQLNLNIPVDEH-GNTPLHWLTSIANLELVKHLVK----HGSNRLYGDNMGESCLVKAV 172 (327)
T ss_dssp -----CHHHHHHHHHHHCT-TSCCCSCSCCSTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCTTBCCTTCCCHHHHHH
T ss_pred chhHHHHHhhHHHHHHHHH-hcCCCcccccCCC-CCcHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHH
Confidence 3457777776666666555 67888999 6765 9999999999999999999999 58899999999999999999
Q ss_pred HcCC---HHHHHHHHhCC-CCccccccCCCcceeeehhhccCCChHHHHHHHhhCCC-----------------------
Q 011578 94 KNGC---NEAAKLLLAHG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA----------------------- 146 (482)
Q Consensus 94 ~~g~---~~~v~~Ll~~g-a~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~ga----------------------- 146 (482)
..|+ .++++.|++++ ++++.+|..|+||||+|+..+...|+.+++++|++.++
T Consensus 173 ~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~ 252 (327)
T 1sw6_A 173 KSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 252 (327)
T ss_dssp HSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------
T ss_pred HhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc
Confidence 9998 78888888887 78999999999999999943323889999999998743
Q ss_pred ----------------------CccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 147 ----------------------DCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 147 ----------------------d~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
+++.+|..|+||||+|+. .++.+++++|+++|++++.+.
T Consensus 253 ~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~-~g~~~~v~~Ll~~Gad~~~~d 313 (327)
T 1sw6_A 253 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR-LGNISIVDALLDYGADPFIAN 313 (327)
T ss_dssp -------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHH-HCCHHHHHHHHHTTCCTTCCC
T ss_pred cccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH-cCCHHHHHHHHHcCCCCcccC
Confidence 578889999999955554 678899999999999876554
No 119
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.90 E-value=7.2e-24 Score=184.40 Aligned_cols=133 Identities=18% Similarity=0.194 Sum_probs=122.7
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.||||+|+..|+.++++.|+.. +.+++..+.. |.||||+|+..|+.+++++|++ .+++++.+|..|.
T Consensus 30 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~ 103 (167)
T 3v31_A 30 NHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKG-RESALSLACSKGYTDIVKMLLD----CGVDVNEYDWNGG 103 (167)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHH----HTCCTTCCCTTSC
T ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCC-CCcHHHHHHHcCCHHHHHHHHH----CCCCCCcCCCCCC
Confidence 34567899999999999999999999965 7778888876 9999999999999999999999 5788999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCcc
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS 149 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~ 149 (482)
||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ..|+.+++++|++++++..
T Consensus 104 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~----~~~~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 104 TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV----ALGYRSVQQVIESHLLKLL 162 (167)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HHTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HcCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 8889999999999876643
No 120
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.90 E-value=1.3e-26 Score=248.28 Aligned_cols=243 Identities=17% Similarity=0.275 Sum_probs=175.1
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|++.+++.+.+. +.++..+...+...+..++.+++|+||||||||++|+++|+.+.. +|+.+++
T Consensus 475 ~~~di~gl~~vk~~l~~~---v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~-------~~i~v~~ 544 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQEL---VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIKG 544 (806)
T ss_dssp SSCSSSCCCCHHHHHHTT---TTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC-------CCCCCCC
T ss_pred cccccccchhhhhhHHHH---HHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC-------CEEEEec
Confidence 467889999999999876 333334444455556667889999999999999999999999865 7888999
Q ss_pred ccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCC---hhHHHHHHHHHhhhcC----CcEEEEEecC
Q 011578 284 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDK---DYGIEALEEIMSVMDG----GKVVVIFAGY 353 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~---~~~~~~~~~ll~~l~~----~~~~vi~~~~ 353 (482)
+++.++|+|+++..++.+|..++ ++||||||+|.+.+.++.... ....+++++|++.|++ ..++||+||+
T Consensus 545 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN 624 (806)
T 1ypw_A 545 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 624 (806)
T ss_dssp SSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCB
T ss_pred hHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecC
Confidence 99999999999999999998764 489999999999988865432 3567899999999985 4567777755
Q ss_pred chhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 354 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
.... + +|++++ ||+..|+|+.|+.+++.+|++.++++.. +..+++.+.++..+. .
T Consensus 625 ~~~~--l---d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~---------~~~~~~l~~la~~t~---------g 681 (806)
T 1ypw_A 625 RPDI--I---DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP---------VAKDVDLEFLAKMTN---------G 681 (806)
T ss_dssp SCGG--G---SCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-------------CCCCSCSCGGGS---------S
T ss_pred Cccc--C---CHHHhCccccCceeecCCCCHHHHHHHHHHHhccCC---------CCcccCHHHHHHhcc---------c
Confidence 4332 2 999999 9999999999999999999999887643 122223222332222 4
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCCCC----------------ChhhhhcccHHHHHHHHHHHHh
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFDCL----------------DTDELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~~~----------------~~~~~~~i~~~d~~~al~~~~~ 479 (482)
.+++++++++..|...+..+...... .......|+.+||.+|++.++|
T Consensus 682 ~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~ 745 (806)
T 1ypw_A 682 FSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR 745 (806)
T ss_dssp SCCHHHHHHHHHHHHHHHSCC------------------------CCTTTTTTSSCCCCCC---
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccCccCHHHHHHHHHhCCC
Confidence 56788888888888777655321100 0111235777777777666555
No 121
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.89 E-value=1.2e-22 Score=199.48 Aligned_cols=255 Identities=19% Similarity=0.253 Sum_probs=173.2
Q ss_pred HHHHHHhh-hhchHHHHHHHHHHHHHHhHHHHHHHcCCC--CCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC
Q 011578 200 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLK--VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 276 (482)
Q Consensus 200 ~~~~~l~~-i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~ 276 (482)
.+...+++ ++|++.+++.+...+.... .+...+.. -...++.++||+||||||||++|++||+.++.
T Consensus 8 ~l~~~l~~~i~G~~~~~~~l~~~i~~~~---~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~------- 77 (363)
T 3hws_A 8 EIRNHLDDYVIGQEQAKKVLAVAVYNHY---KRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV------- 77 (363)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHHH---HHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHHH---hhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC-------
Confidence 34445554 6999999999988754332 22222211 11235678999999999999999999998854
Q ss_pred CeEEeeccccccc-ccccc-hhhHHHHHHhc-------CCcEEEEecccccccCCCCCC---ChhHHHHHHHHHhhhcCC
Q 011578 277 RVTEVQRTDLVGE-FVGHT-GPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDGG 344 (482)
Q Consensus 277 ~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~---~~~~~~~~~~ll~~l~~~ 344 (482)
+|+.++++.+... |+|++ ...++++|..+ .++||||||+|.+.+.+.+.+ +.....+++.|++.|++.
T Consensus 78 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~ 157 (363)
T 3hws_A 78 PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT 157 (363)
T ss_dssp CEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC
T ss_pred CEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCc
Confidence 8999999987754 88886 55667777554 568999999999998765432 223345889999999831
Q ss_pred -----------------------cEEEEEecCchhHHHHHh---------------------------------------
Q 011578 345 -----------------------KVVVIFAGYSEPMKRVIA--------------------------------------- 362 (482)
Q Consensus 345 -----------------------~~~vi~~~~~~~~~~~~~--------------------------------------- 362 (482)
.+++|++++...++.++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~ 237 (363)
T 3hws_A 158 VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 237 (363)
T ss_dssp ----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHH
T ss_pred eeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHc
Confidence 123344433322222111
Q ss_pred -cCccccCCCcceeeCCCCCHHHHHHHHHH----HHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchh
Q 011578 363 -SNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLV 437 (482)
Q Consensus 363 -~~~~l~~R~~~~i~~~~~~~~~~~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 437 (482)
..|+|.+||+.++.|++|+.+++.+|+.. ++.+..+....+ .....++++++..++...+ ...+|+|.|
T Consensus 238 ~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~--~~~l~~~~~a~~~L~~~~~----~~~~gaR~L 311 (363)
T 3hws_A 238 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLE--GVDLEFRDEALDAIAKKAM----ARKTGARGL 311 (363)
T ss_dssp TCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTT--TCEEEECHHHHHHHHHHHH----HTTCTTTTH
T ss_pred CCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CceEEECHHHHHHHHHhhc----CCccCchHH
Confidence 27899999999999999999999999987 444332211111 2334679999999997543 137889999
Q ss_pred HHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHH
Q 011578 438 DPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA 472 (482)
Q Consensus 438 ~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~ 472 (482)
++++++++.....++.... .-....|+.+++++
T Consensus 312 ~~~ie~~~~~~l~~~~~~~--~~~~~~I~~~~v~~ 344 (363)
T 3hws_A 312 RSIVEAALLDTMYDLPSME--DVEKVVIDESVIDG 344 (363)
T ss_dssp HHHHHHHHHHHHHSTTTCC--CSEEEECHHHHTTC
T ss_pred HHHHHHHHHHHHHhccccc--CCceeEEcHHHHhC
Confidence 9999999999877664321 01233566666654
No 122
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.89 E-value=4.2e-23 Score=177.32 Aligned_cols=126 Identities=19% Similarity=0.280 Sum_probs=117.1
Q ss_pred ccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 7 RRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 7 ~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
...+..|.||||+ |..|+.+.++.|++ .+.+++..+.. |+||||+|+..|+.+++++|++ .|++++.+|..|+
T Consensus 30 ~~~~~~g~t~L~~-~~~~~~~~v~~Ll~-~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~ 102 (156)
T 1bd8_A 30 DALNRFGKTALQV-MMFGSTAIALELLK-QGASPNVQDTS-GTSPVHDAARTGFLDTLKVLVE----HGADVNVPDGTGA 102 (156)
T ss_dssp TCCCTTSCCHHHH-SCTTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTSC
T ss_pred cccCCCCCcHHHH-HHcCCHHHHHHHHH-CCCCCCCcCCC-CCCHHHHHHHcCcHHHHHHHHH----cCCCCCCcCCCCC
Confidence 3456789999999 99999999999995 47788888876 9999999999999999999999 5788999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 144 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~ 144 (482)
||||+|+..|+.+++++|+++ ++++.+|.+|+||||+|+ ..|+.+++++|+++
T Consensus 103 t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~----~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 103 LPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELAL----QRGAQDLVDILQGH 155 (156)
T ss_dssp CHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHH----HSCCHHHHHHHHTT
T ss_pred cHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHH----HcCcHHHHHHHHhh
Confidence 999999999999999999999 999999999999999999 88999999999874
No 123
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=7.1e-24 Score=187.51 Aligned_cols=138 Identities=26% Similarity=0.260 Sum_probs=104.8
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCc-CCCChHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPL 89 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~tpL 89 (482)
..|.||||+||..|+.+.++.||. +.++|..+.. |+||||+|+..|+.+++++|++ .+++++.++ ..|+|||
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~-g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~~g~tpL 114 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE--DRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAE----AGADLDHRDMRGGLTAL 114 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCSSSSCCHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCCHH
Confidence 456788888888888888888885 6677777775 8888888888888888888888 567777777 7788888
Q ss_pred HHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCCh
Q 011578 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 169 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~ 169 (482)
|+|+..|+.+++++|+++|++++.+|.+|+||||+|+..+ ....+.+||++++ ..+..
T Consensus 115 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~---------------------~~~~~~~~l~~a~-~~~~~ 172 (183)
T 3deo_A 115 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL---------------------KTTPKGNPMQFGR-RIGLE 172 (183)
T ss_dssp HHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH---------------------HTCCCCSHHHHHH-HHHHH
T ss_pred HHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc---------------------cCcccccHHHHHH-HcCHH
Confidence 8888888888888888888888888888888888887211 1134567884444 45666
Q ss_pred HHHHHHHh
Q 011578 170 KLRELLLW 177 (482)
Q Consensus 170 ~~~~lL~~ 177 (482)
+++++|..
T Consensus 173 ~i~~~L~~ 180 (183)
T 3deo_A 173 KVINVLEG 180 (183)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 77777764
No 124
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.89 E-value=6.7e-23 Score=193.69 Aligned_cols=229 Identities=22% Similarity=0.307 Sum_probs=163.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|.+.+++.+......+..+........ ..+.+++|+||||||||++++++++.+.. +++.++
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~----~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-------~~i~~~ 105 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGA----RIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITAS 105 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTC----CCCCEEEEECCTTSSHHHHHHHHHHHTTC-------CEEEEE
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCC----CCCCeEEEECCCcChHHHHHHHHHHHcCC-------CEEEec
Confidence 4578999999999999987665544433333333 34567999999999999999999997753 788888
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCC---CChhHHHHHHHHHhhhcCC---c-EEEEEec
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDGG---K-VVVIFAG 352 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~---~~~~~~~~~~~ll~~l~~~---~-~~vi~~~ 352 (482)
+.++...+.|.....+..+|+.+. ++++||||+|.+...+... ..+...+.+++++..|+++ . +++++++
T Consensus 106 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t 185 (278)
T 1iy2_A 106 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 185 (278)
T ss_dssp HHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEE
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEec
Confidence 888877778877777888888764 4899999999997765421 2344567788899888763 2 4444444
Q ss_pred CchhHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 353 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
+.... .+|++++ ||+..++|+.|+.++|.+|++.+++.. .+..+++...++..+.
T Consensus 186 ~~p~~-----ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---------~~~~~~~~~~la~~~~--------- 242 (278)
T 1iy2_A 186 NRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLALLAKRTP--------- 242 (278)
T ss_dssp SCTTS-----SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS---------CBCTTCCHHHHHHTCT---------
T ss_pred CCchh-----CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC---------CCCcccCHHHHHHHcC---------
Confidence 43322 2888877 999999999999999999999887542 2334444443332221
Q ss_pred ccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHH
Q 011578 431 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 474 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al 474 (482)
...+++|++++++|...+..+ ....|+.+||.+|+
T Consensus 243 G~~~~dl~~l~~~a~~~a~~~---------~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 243 GFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAA 277 (278)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT---------TCCSBCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHh---------CCCCcCHHHHHHHh
Confidence 334589999999998765322 12469999999886
No 125
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.89 E-value=4.4e-22 Score=191.22 Aligned_cols=259 Identities=17% Similarity=0.258 Sum_probs=174.8
Q ss_pred HHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCC-CCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC
Q 011578 200 ELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKV-GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 277 (482)
Q Consensus 200 ~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~ 277 (482)
.+...++ .++|++.+++.+...+... ..+....... ....+.+++|+||||||||++|+++|+.+.. +
T Consensus 8 ~l~~~l~~~i~G~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-------~ 77 (310)
T 1ofh_A 8 EIVSELDQHIIGQADAKRAVAIALRNR---WRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-------P 77 (310)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHH---HHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC-------C
T ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHH---HhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC-------C
Confidence 3444555 4899999999998765431 0100000000 0125678999999999999999999998854 8
Q ss_pred eEEeecccccc-cccccc-hhhHHHHHHhc--------CCcEEEEecccccccCCCCCCChhH-HHHHHHHHhhhcCC--
Q 011578 278 VTEVQRTDLVG-EFVGHT-GPKTRRRIKEA--------EGGILFVDEAYRLIPMQKADDKDYG-IEALEEIMSVMDGG-- 344 (482)
Q Consensus 278 ~~~~~~~~~~~-~~~g~~-~~~~~~~~~~a--------~~~vl~iDE~d~l~~~~~~~~~~~~-~~~~~~ll~~l~~~-- 344 (482)
++.++++.+.. .|+|.. ...+++++..+ .++||||||+|.+.+.......+.. ..+.+.|++.|++.
T Consensus 78 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 157 (310)
T 1ofh_A 78 FIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTV 157 (310)
T ss_dssp EEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEE
T ss_pred EEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeE
Confidence 89999988766 577754 34466666543 3689999999999987654444433 34578888888864
Q ss_pred ----------cEEEEEecC---chhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHH----HHhccccccccccccc
Q 011578 345 ----------KVVVIFAGY---SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKL 407 (482)
Q Consensus 345 ----------~~~vi~~~~---~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~----~l~~~~~~~~~~~~~~ 407 (482)
.+++|++++ .++ . ..+|++.+||+..++|++|+.+++.+|++. ++.+........ ..
T Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~-~---~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~--~~ 231 (310)
T 1ofh_A 158 STKHGMVKTDHILFIASGAFQVARP-S---DLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATE--GV 231 (310)
T ss_dssp EETTEEEECTTCEEEEEECCSSSCG-G---GSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHT--TC
T ss_pred ecccccccCCcEEEEEcCCcccCCc-c---cCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhc--CC
Confidence 567777752 222 1 238999999998899999999999999983 222111000001 12
Q ss_pred cCcccHHHHHHHHHHHhhH-hhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 408 HSSCSMDAIAALIEKETTE-KQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 408 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
...++++++..++...|.. .....+|.|.++++++.+......+... ..+....|+.+|+.++++.+
T Consensus 232 ~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~---~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 232 NIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASD---MNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGG---CTTCEEEECHHHHHHHTCSS
T ss_pred eeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCcc---ccCCEEEEeeHHHHHHHHhh
Confidence 2467899999999988732 1122589999999999998775544331 11223369999999988754
No 126
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=1.2e-23 Score=194.96 Aligned_cols=140 Identities=26% Similarity=0.258 Sum_probs=116.4
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCc-CCCChHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPL 89 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~tpL 89 (482)
+.|.||||+||..|+.+.|+.||. +.++|..+.. |+||||+||..|+.++|++|++ .+++++.++ ..|+|||
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~g~t~L 115 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE--DRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAE----AGADLDHRDMRGGLTAL 115 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTT-SCBHHHHHHHHTCHHHHHHHHH----TTCCTTCCCSSSCCCHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCC-CCCHHHHHHHCCCHHHHHHHHH----cCCCCCcCCCCCCCCHH
Confidence 467899999999999999998886 6778888876 9999999999999999999998 578888888 7899999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCCh
Q 011578 90 HMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 169 (482)
Q Consensus 90 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~ 169 (482)
|+|+..|+.+++++|+++|++++.+|..|+||||+|+..+ ....+.||||++ +..++.
T Consensus 116 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~---------------------~~~~~~~~l~~a-~~~g~~ 173 (244)
T 3ui2_A 116 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL---------------------KTTPKGNPMQFG-RRIGLE 173 (244)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH---------------------TTCCCSSHHHHH-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH---------------------hccCCCCHHHHH-HHcChH
Confidence 9999999999999999999999999999999999998211 224578999554 446677
Q ss_pred HHHHHHHhhh
Q 011578 170 KLRELLLWHS 179 (482)
Q Consensus 170 ~~~~lL~~~~ 179 (482)
+++++|..++
T Consensus 174 ~iv~~L~~~~ 183 (244)
T 3ui2_A 174 KVINVLEGQV 183 (244)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7888888654
No 127
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.89 E-value=5.5e-24 Score=188.35 Aligned_cols=132 Identities=15% Similarity=0.105 Sum_probs=117.3
Q ss_pred CCCchHhHHHHHcCCHH----HHHHHHhhCCCCccCCCCCCCChHHHHHHhCCc------HHHHHHHHcCCCCCCccccc
Q 011578 11 SAKPATIHGCAQSGDLL----AFQRLLRENPSLLNERNPVMAQTPLHVSAGYNK------AEIVKSLLEWPGNDKVELEA 80 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~----~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~------~~~v~~Ll~~~~~~~~~~~~ 80 (482)
..|.||||+|+..|+.+ +++.|| +.|.++|..+.. |+||||+|+..|+ .+++++|++ .|+++|.
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll-~~Gadvn~~d~~-g~TpLh~a~~~~~~~~~~~~~iv~~Ll~----~Gadin~ 109 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLI-NKGADIKSRTKE-GTTLFFPLFQGGGNDITGTTELCKIFLE----KGADITA 109 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHH-HTTCCSSCCCTT-CCCTHHHHHHHCTTCHHHHHHHHHHHHH----TTCCSSS
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHH-HCCCCCCCCCCC-CCcHHHHHHHcCCcchhhHHHHHHHHHH----CCCCCCc
Confidence 46899999999999864 788777 568899999976 9999999999987 688999999 6899999
Q ss_pred CcCCCC-hHHHHHHHcC-----CHHHHHHHHh-CCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccC
Q 011578 81 QNMYGE-TPLHMAAKNG-----CNEAAKLLLA-HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 152 (482)
Q Consensus 81 ~~~~g~-tpLh~A~~~g-----~~~~v~~Ll~-~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d 152 (482)
+|..|+ ||||+|+..+ +.+++++|++ +|++++.+|..|+||||+|+ ..|+.+++++|.++..+.+.++
T Consensus 110 ~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~----~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 110 LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK----RCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH----TTTCHHHHHHHHHHHHHHTCCC
T ss_pred cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH----HcCCHHHHHHHHHHHHHHhccc
Confidence 999999 9999999954 4579999999 99999999999999999999 8899999999998776666655
No 128
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.89 E-value=1.3e-21 Score=192.85 Aligned_cols=258 Identities=17% Similarity=0.261 Sum_probs=178.2
Q ss_pred HHHHHHh-hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCC-CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCC
Q 011578 200 ELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA-RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 277 (482)
Q Consensus 200 ~~~~~l~-~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~ 277 (482)
++...++ .++|++.+|+.+... +..+.++......+.. .++.++||+||||||||++|+++|+.++. +
T Consensus 8 ~i~~~Ld~~IvGqe~ak~~l~~a---v~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~-------~ 77 (444)
T 1g41_A 8 EIVSELDQHIIGQADAKRAVAIA---LRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-------P 77 (444)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHH---HHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC-------C
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH---HHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC-------C
Confidence 3445555 689999999999776 3344455555444433 25678999999999999999999998866 8
Q ss_pred eEEeecccccc-ccccc-chhhHHHHHH----------------------------------------------------
Q 011578 278 VTEVQRTDLVG-EFVGH-TGPKTRRRIK---------------------------------------------------- 303 (482)
Q Consensus 278 ~~~~~~~~~~~-~~~g~-~~~~~~~~~~---------------------------------------------------- 303 (482)
|+.++++.+.. .|+|+ .+..++++|.
T Consensus 78 ~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~ 157 (444)
T 1g41_A 78 FIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQ 157 (444)
T ss_dssp EEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC-------------------------------------
T ss_pred ceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHH
Confidence 88999888777 48885 3444433332
Q ss_pred --------------------------------------------------------------------------------
Q 011578 304 -------------------------------------------------------------------------------- 303 (482)
Q Consensus 304 -------------------------------------------------------------------------------- 303 (482)
T Consensus 158 ~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~ 237 (444)
T 1g41_A 158 AFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINP 237 (444)
T ss_dssp --------------------------------------------------------------------CCGGGSCSSCCH
T ss_pred HHHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCH
Confidence
Q ss_pred ---------hc-CCcEEEEecccccccCCCCCCChhHH-HHHHHHHhhhcC------------CcEEEEEecC---chhH
Q 011578 304 ---------EA-EGGILFVDEAYRLIPMQKADDKDYGI-EALEEIMSVMDG------------GKVVVIFAGY---SEPM 357 (482)
Q Consensus 304 ---------~a-~~~vl~iDE~d~l~~~~~~~~~~~~~-~~~~~ll~~l~~------------~~~~vi~~~~---~~~~ 357 (482)
.+ ..+|||+||||+++.+..+...+.+. .+.+.||+.||+ ..+++|+++. .++.
T Consensus 238 ~~~~~~ai~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~ 317 (444)
T 1g41_A 238 EELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPS 317 (444)
T ss_dssp HHHHHHHHHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGG
T ss_pred HHHHHHHHHHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChh
Confidence 22 35799999999999764433445444 477889999986 3456777761 2232
Q ss_pred HHHHhcCccccCCCcceeeCCCCCHHHHHHHHH---HHHhccc-cccccccccccCcccHHHHHHHHHHHhh-Hhhcccc
Q 011578 358 KRVIASNEGFCRRVTKFFHFNDFNSEELAKILH---IKMNNQT-EDSLLYGFKLHSSCSMDAIAALIEKETT-EKQRREM 432 (482)
Q Consensus 358 ~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~---~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ 432 (482)
+ ..|+|.+||+.++.|++++.++..+|+. .++-++. +..... .....++++++..+++.... ....+..
T Consensus 318 d----lipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~--~~~l~~~~~al~~i~~~a~~~~~~t~~~ 391 (444)
T 1g41_A 318 D----LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATE--GVNIAFTTDAVKKIAEAAFRVNEKTENI 391 (444)
T ss_dssp G----SCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTT--TCEEEECHHHHHHHHHHHHHHHHHSCCC
T ss_pred h----cchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhccc--CceEEECHHHHHHHHHHHHHhccCCccC
Confidence 2 2699999999999999999999999993 2222211 111111 23456799999999987542 1233567
Q ss_pred CcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHH
Q 011578 433 NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 476 (482)
Q Consensus 433 ~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~ 476 (482)
++|.++++++.+++..+.++.... .....||.+++.+.+..
T Consensus 392 GaR~L~~~ie~~~~~~~~~~~~~~---~~~~~i~~~~v~~~l~~ 432 (444)
T 1g41_A 392 GARRLHTVMERLMDKISFSASDMN---GQTVNIDAAYVADALGE 432 (444)
T ss_dssp GGGHHHHHHHHHHHHHHHHGGGCT---TCEEEECHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHhhccccC---CCeEEEeHHHHHHhcCc
Confidence 899999999999999877765321 23457899888877653
No 129
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.88 E-value=1.2e-23 Score=191.97 Aligned_cols=132 Identities=19% Similarity=0.234 Sum_probs=110.8
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhC-CCCccccccCCCcceeeeh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHLSV 126 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpLh~A~ 126 (482)
|.||||+||..|+.+++++|++ .+++++.+|..|+||||+||..|+.+++++|+++ |++++.+|.+|+||||+|+
T Consensus 73 g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~ 148 (222)
T 3ehr_A 73 IDNPLHEAAKRGNLSWLRECLD----NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA 148 (222)
T ss_dssp ESCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred cccccccccccCcHHHHHHHHh----CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence 7899999999999999999999 5788999999999999999999999999999999 9999999999999999999
Q ss_pred hhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHhhH
Q 011578 127 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRAL 188 (482)
Q Consensus 127 ~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~~~ 188 (482)
..|+.+++++|+++|++++.+|..|+||| +.|...+..++++.|...++........
T Consensus 149 ----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~~~~l~~l~~~~~~~~~~~~~ 205 (222)
T 3ehr_A 149 ----WKGYADIVQLLLAKGARTDLRNIEKKLAF-DMATNAACASLLKKKQGTDAVRTLSNAE 205 (222)
T ss_dssp ----HHTCHHHHHHHHHHTCCSCCCCTTSCCHH-HHCCSHHHHHHHC---------------
T ss_pred ----HcCCHHHHHHHHHcCCCCccccCCCCCHH-HHhcchhHHHHHHHHhccchhhhccchh
Confidence 78899999999999999999999999999 5555677888888888888876655543
No 130
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=2.8e-23 Score=183.67 Aligned_cols=108 Identities=27% Similarity=0.404 Sum_probs=102.9
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccc-cCCCcceeeeh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLSV 126 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A~ 126 (482)
|.||||+|+..|+.+++++|++ +++++.+|..|+||||+|+..|+.+++++|+++|++++.+| .+|+||||+|+
T Consensus 44 g~t~L~~A~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 44 YETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTT-----TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHh-----cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 8999999999999999999997 56889999999999999999999999999999999999998 89999999999
Q ss_pred hhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhc
Q 011578 127 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164 (482)
Q Consensus 127 ~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~ 164 (482)
..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus 119 ----~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 152 (183)
T 3deo_A 119 ----GYVRPEVVEALVELGADIEVEDERGLTALELARE 152 (183)
T ss_dssp ----HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred ----hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHH
Confidence 8899999999999999999999999999976654
No 131
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=1.2e-22 Score=158.43 Aligned_cols=92 Identities=48% Similarity=0.671 Sum_probs=82.1
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehh
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 127 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~ 127 (482)
|+||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~----~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~- 76 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA- 76 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-
T ss_pred CCcHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH-
Confidence 8899999999999999999998 57888889999999999999999999999999999999999999999999999
Q ss_pred hccCCChHHHHHHHhhCCCC
Q 011578 128 YSIRSEDYATVKTLLEYNAD 147 (482)
Q Consensus 128 ~~~~~~~~~~v~~Ll~~gad 147 (482)
..|+.+++++|+++|++
T Consensus 77 ---~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 77 ---RNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp ---HTTCHHHHHHHHHTTCC
T ss_pred ---HcCCHHHHHHHHHcCCC
Confidence 78889999999998875
No 132
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.87 E-value=1.5e-23 Score=205.64 Aligned_cols=161 Identities=12% Similarity=0.034 Sum_probs=127.6
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCc--cCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCC-cccccCcCCCCh
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLL--NERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDK-VELEAQNMYGET 87 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~--~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~g~t 87 (482)
..+.||||.||..|+.++|+.|+..+.... +..+.. |.||||+||..|+.++|++|+++|++.. ++++..+ +|
T Consensus 90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~-~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~---~T 165 (376)
T 2aja_A 90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE-NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN---YH 165 (376)
T ss_dssp CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHH-HHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH---HH
T ss_pred CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccC-CCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC---CC
Confidence 345699999999999999999997654221 122333 8899999999999999999999532100 2333333 89
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccc--cccCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcC
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEA--KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 165 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~--~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~ 165 (482)
|||+||..|+.++|++|+++|++++. .|..|+||||+|+. ..|+.++|++|+++|++ |.|||| .|+.
T Consensus 166 pLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~---~~G~~eiv~~Ll~~ga~-------~~taL~-~Aa~ 234 (376)
T 2aja_A 166 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV---GRGHHNVINFLLDCPVM-------LAYAEI-HEFE 234 (376)
T ss_dssp HHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHS---TTCCHHHHHHHTTSHHH-------HHHHHH-CTTT
T ss_pred HHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHH---HCCCHHHHHHHHhCCCc-------cchHHH-HHHH
Confidence 99999999999999999999999988 89999999999981 35789999999998753 899995 5555
Q ss_pred CCChHHHHHHHhhhHHHHHHh
Q 011578 166 PGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 166 ~~~~~~~~lL~~~~~~~~~~~ 186 (482)
.++.+++++|.++|++...+.
T Consensus 235 ~g~~evv~lL~~~ga~~~~~~ 255 (376)
T 2aja_A 235 YGEKYVNPFIARHVNRLKEMH 255 (376)
T ss_dssp TTTTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCccccccc
Confidence 677789999999999876553
No 133
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.87 E-value=5.5e-22 Score=188.33 Aligned_cols=160 Identities=15% Similarity=0.209 Sum_probs=117.0
Q ss_pred CCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEE
Q 011578 239 GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILF 311 (482)
Q Consensus 239 ~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~ 311 (482)
+...|.++||+||||||||++|+++|+.++. +|+.++++++.++|+|+++..++++|+.+ .++|||
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~-------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~ 104 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGI-------NPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLF 104 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTC-------CCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 3456789999999999999999999999965 89999999999999999999999999887 679999
Q ss_pred EecccccccCCCCCC--ChhHHHHHHHHHhhhcC---------------CcEEEEEecCchhHHHHHhcCccccC--CCc
Q 011578 312 VDEAYRLIPMQKADD--KDYGIEALEEIMSVMDG---------------GKVVVIFAGYSEPMKRVIASNEGFCR--RVT 372 (482)
Q Consensus 312 iDE~d~l~~~~~~~~--~~~~~~~~~~ll~~l~~---------------~~~~vi~~~~~~~~~~~~~~~~~l~~--R~~ 372 (482)
|||||++.+.+.+.+ ......+.+.|++.||+ ..++||+||+..... +|++++ ||+
T Consensus 105 iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~l-----d~al~R~~R~d 179 (293)
T 3t15_A 105 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTL-----YAPLIRDGRME 179 (293)
T ss_dssp EECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC-------CHHHHHHHEE
T ss_pred EechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccC-----CHHHhCCCCCc
Confidence 999999998654322 22345777888888862 356777776543322 788875 998
Q ss_pred ceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhh
Q 011578 373 KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT 425 (482)
Q Consensus 373 ~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 425 (482)
..|.+ |+.+++.+|++.++.. ..++.+.++.++.++.+
T Consensus 180 ~~i~~--P~~~~r~~Il~~~~~~-------------~~~~~~~l~~~~~~~~~ 217 (293)
T 3t15_A 180 KFYWA--PTREDRIGVCTGIFRT-------------DNVPAEDVVKIVDNFPG 217 (293)
T ss_dssp EEEEC--CCHHHHHHHHHHHHGG-------------GCCCHHHHHHHHHHSCS
T ss_pred eeEeC--cCHHHHHHHHHHhccC-------------CCCCHHHHHHHhCCCCc
Confidence 88875 5999999999988764 24567888888887653
No 134
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.87 E-value=6.8e-22 Score=197.66 Aligned_cols=209 Identities=20% Similarity=0.292 Sum_probs=152.5
Q ss_pred HHHhhhhchHHHH---HHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeE
Q 011578 203 NELSNIVGLHELK---IQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 279 (482)
Q Consensus 203 ~~l~~i~G~~~~k---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~ 279 (482)
..|++++|++.++ ..+...+.. ....+++|+||||||||++|++||+.+.. +|+
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~----------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~-------~f~ 79 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA----------------GHLHSMILWGPPGTGKTTLAEVIARYANA-------DVE 79 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH----------------TCCCEEEEECSTTSSHHHHHHHHHHHTTC-------EEE
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc----------------CCCcEEEEECCCCCcHHHHHHHHHHHhCC-------CeE
Confidence 4578899999998 555554321 23468999999999999999999998754 777
Q ss_pred EeecccccccccccchhhHHHHHHh-------cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEec
Q 011578 280 EVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG 352 (482)
Q Consensus 280 ~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~ 352 (482)
.+++... +...++++|.. ..++||||||||.+....+ +.|+..++++.+++|++|
T Consensus 80 ~l~a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q-----------~~LL~~le~~~v~lI~at 141 (447)
T 3pvs_A 80 RISAVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ-----------DAFLPHIEDGTITFIGAT 141 (447)
T ss_dssp EEETTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHTTSCEEEEEE
T ss_pred EEEeccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHH-----------HHHHHHHhcCceEEEecC
Confidence 7775432 22334444443 3569999999999987666 789999999999999999
Q ss_pred CchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccc-cccCcccHHHHHHHHHHHhhHhhccc
Q 011578 353 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 353 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
+.++...+ ++++.+|+ .++.|++|+.+++..+++.++.+... ++ .....++++++..++.. + .
T Consensus 142 t~n~~~~l---~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~-----~~~~~~~~i~~~al~~L~~~-~------~ 205 (447)
T 3pvs_A 142 TENPSFEL---NSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTR-----GYGGQDIVLPDETRRAIAEL-V------N 205 (447)
T ss_dssp SSCGGGSS---CHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTT-----SSTTSSEECCHHHHHHHHHH-H------C
T ss_pred CCCccccc---CHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhh-----hhccccCcCCHHHHHHHHHH-C------C
Confidence 87776444 89999999 58889999999999999999987442 22 12345788999999987 4 7
Q ss_pred cCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 432 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
||.|.+.++++.+....... ......||.+++.++++
T Consensus 206 Gd~R~lln~Le~a~~~a~~~-------~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 206 GDARRALNTLEMMADMAEVD-------DSGKRVLKPELLTEIAG 242 (447)
T ss_dssp SCHHHHHHHHHHHHHHSCBC-------TTSCEECCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcccc-------cCCCCccCHHHHHHHHh
Confidence 99999999999998764210 01224577777766654
No 135
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.86 E-value=2e-22 Score=163.73 Aligned_cols=108 Identities=39% Similarity=0.491 Sum_probs=98.0
Q ss_pred CCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcce
Q 011578 43 RNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPL 122 (482)
Q Consensus 43 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL 122 (482)
.+.. |+||||+||..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+|||
T Consensus 5 ~d~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl 79 (115)
T 2l6b_A 5 GSKD-GNTPLHNAAKNGHAEEVKKLLS----KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPE 79 (115)
T ss_dssp CSCS-SCCHHHHHHHHTCHHHHHHHTT----TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTT
T ss_pred cCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHH
Confidence 3444 9999999999999999999999 5788999999999999999999999999999999999999999999999
Q ss_pred eeehhhccCCChHHHHHHHhhCCCCccccCCCCCChh
Q 011578 123 HLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 159 (482)
Q Consensus 123 h~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl 159 (482)
|+|+ ..++.+++++|+++|+++|.++..|.||-
T Consensus 80 ~~A~----~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 80 HLAK----KNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHHH----TTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHH----HCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 9999 88999999999999999999999999885
No 136
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.86 E-value=4e-21 Score=189.59 Aligned_cols=257 Identities=16% Similarity=0.235 Sum_probs=161.4
Q ss_pred HHHHHHHHhh-hhchHHHHHHHHHHHHHHhHHHHHHHcCC-----------------CCCCCCCCceeEecCCCCchHHH
Q 011578 198 MDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGL-----------------KVGARRPPHMAFLGNPGTGKTMV 259 (482)
Q Consensus 198 ~~~~~~~l~~-i~G~~~~k~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ll~GppGtGKT~l 259 (482)
...+...+++ ++|++.+++.+...+.... .+...+. .-...+..+++|+||||||||++
T Consensus 12 ~~~l~~~L~~~viGq~~ak~~l~~~~~~~~---~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 12 PKELKAVLDNYVIGQEQAKKVFSVAVYNHY---KRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLM 88 (376)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHH
T ss_pred HHHHHHHHhhHccCcHHHHHHHHHHHHHHH---HHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHH
Confidence 3445556665 7999999999987653111 1111000 00123567899999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCeEEeeccccc-ccccccc-hhhHHHHHH-------hcCCcEEEEecccccccCCCCCC---C
Q 011578 260 ARILGRLLYMVGILPTDRVTEVQRTDLV-GEFVGHT-GPKTRRRIK-------EAEGGILFVDEAYRLIPMQKADD---K 327 (482)
Q Consensus 260 a~~la~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~-------~a~~~vl~iDE~d~l~~~~~~~~---~ 327 (482)
|+++|+.++. +|+.++++.+. ..|+|+. ...+.+.+. .+.++||||||+|.+.+.+.... +
T Consensus 89 a~~la~~l~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~ 161 (376)
T 1um8_A 89 AQTLAKHLDI-------PIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRD 161 (376)
T ss_dssp HHHHHHHTTC-------CEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC------------
T ss_pred HHHHHHHhCC-------CEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecc
Confidence 9999998754 88989888765 4577765 344555554 34679999999999988643211 1
Q ss_pred hhHHHHHHHHHhhhcCCc-----------------------EEEEEecCchhHHHHH-----------------------
Q 011578 328 DYGIEALEEIMSVMDGGK-----------------------VVVIFAGYSEPMKRVI----------------------- 361 (482)
Q Consensus 328 ~~~~~~~~~ll~~l~~~~-----------------------~~vi~~~~~~~~~~~~----------------------- 361 (482)
.....+.+.|++.|+++. +++|++++...++..+
T Consensus 162 ~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~ 241 (376)
T 1um8_A 162 VSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEA 241 (376)
T ss_dssp --CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTT
T ss_pred cchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhH
Confidence 111247788888888542 3566665432222211
Q ss_pred -------------hcCccccCCCcceeeCCCCCHHHHHHHHHH----HHhccccccccccccccCcccHHHHHHHHHHHh
Q 011578 362 -------------ASNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 424 (482)
Q Consensus 362 -------------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 424 (482)
...|+|.+||+.++.|++++.+++.+|+.. ++.+........+ ....++++++..++...|
T Consensus 242 ~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~l~~~~~ 319 (376)
T 1um8_A 242 ILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDE--VDLIFEEEAIKEIAQLAL 319 (376)
T ss_dssp SGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTT--CEEEECHHHHHHHHHHHH
T ss_pred HHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcC--ceEEECHHHHHHHHHHhc
Confidence 136889999999999999999999999973 3332211100012 234578999999999876
Q ss_pred hHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHH
Q 011578 425 TEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAG 473 (482)
Q Consensus 425 ~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a 473 (482)
. ..+|+|.+++++++++.....+.... ......||.+++.++
T Consensus 320 ~----~~~~~R~L~~~le~~~~~~~~~~~~~---~~~~~~i~~~~v~~~ 361 (376)
T 1um8_A 320 E----RKTGARGLRAIIEDFCLDIMFDLPKL---KGSEVRITKDCVLKQ 361 (376)
T ss_dssp H----TTCTGGGHHHHHHHHHHHHHHTGGGG---TTSEEEECHHHHTTS
T ss_pred c----cccCcHHHHHHHHHHHHHHHhhccCC---CCCEEEEeHHHhcCC
Confidence 1 24899999999999999876665421 122346888887654
No 137
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.86 E-value=3e-21 Score=187.86 Aligned_cols=206 Identities=20% Similarity=0.271 Sum_probs=155.0
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|.+..++.+..++..... ...++.+++|+||||||||++|+++|+.++. +|+.+++
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~-----------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~-------~~~~~~~ 88 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKK-----------RNECLDHILFSGPAGLGKTTLANIISYEMSA-------NIKTTAA 88 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHH-----------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTC-------CEEEEEG
T ss_pred CHHHhCChHHHHHHHHHHHHHHHh-----------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-------CeEEecc
Confidence 578899999999999987654421 1235678999999999999999999998754 7888887
Q ss_pred ccccccccccchhhHHHHHHh-cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-----------------
Q 011578 284 TDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK----------------- 345 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~-a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------- 345 (482)
+.+. ....+...+.. +.++|||||||+.+.+ ...+.|+..|+++.
T Consensus 89 ~~~~------~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 89 PMIE------KSGDLAAILTNLSEGDILFIDEIHRLSP-----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp GGCC------SHHHHHHHHHTCCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred hhcc------chhHHHHHHHhccCCCEEEEechhhcCH-----------HHHHHHHHHHHhccchhhcccCccccceecC
Confidence 6542 22345555554 6779999999999976 34477787777643
Q ss_pred ---EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHH
Q 011578 346 ---VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 422 (482)
Q Consensus 346 ---~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (482)
+++|++|+.... .+|++++||+..+.|++|+.+++..+++.++.+.. ..++++++..++.
T Consensus 152 ~~~~~~i~atn~~~~-----l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-----------~~~~~~~~~~l~~- 214 (338)
T 3pfi_A 152 LPKFTLIGATTRAGM-----LSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-----------KTCEEKAALEIAK- 214 (338)
T ss_dssp CCCCEEEEEESCGGG-----SCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-----------CEECHHHHHHHHH-
T ss_pred CCCeEEEEeCCCccc-----cCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHH-
Confidence 678888766544 28899999999999999999999999999887542 3467888888887
Q ss_pred HhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHH
Q 011578 423 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 476 (482)
Q Consensus 423 ~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~ 476 (482)
.| +||.|.+.++++.+...+... ....|+.+++..++..
T Consensus 215 ~~------~G~~r~l~~~l~~~~~~a~~~---------~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 215 RS------RSTPRIALRLLKRVRDFADVN---------DEEIITEKRANEALNS 253 (338)
T ss_dssp TT------TTCHHHHHHHHHHHHHHHHHT---------TCSEECHHHHHHHHHH
T ss_pred HH------CcCHHHHHHHHHHHHHHHHhh---------cCCccCHHHHHHHHHH
Confidence 44 789999999999887654211 1234666666666654
No 138
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.86 E-value=5.1e-22 Score=194.04 Aligned_cols=139 Identities=23% Similarity=0.249 Sum_probs=88.2
Q ss_pred CchHhHHHHHc-CCHHHHHHHHhhCCCCccCCCC-CCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHH
Q 011578 13 KPATIHGCAQS-GDLLAFQRLLRENPSLLNERNP-VMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (482)
Q Consensus 13 ~~t~l~~a~~~-g~~~~v~~ll~~~~~~~~~~~~-~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh 90 (482)
+.|+||.|+.. |+++.|+.||. .+.++|..+. ..|+||||+|+..|+.++|++|++ .++++|.+|..|+||||
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~----~Gadvn~~d~~G~TpLh 273 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALA-HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ----NGANVNQADSAGRGPLH 273 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHH-TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHH-cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHH
Confidence 34577777777 77777777774 4556666651 237777777777777777777777 46667777777777777
Q ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCC---CCccccCCCCCChhh
Q 011578 91 MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN---ADCSAKDNEGKTPLD 160 (482)
Q Consensus 91 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~g---ad~~~~d~~g~tpl~ 160 (482)
+|+..|+.+++++|+++|++++.+|.+|+||||+|+ ..++.+++++|++.+ ++....+..+.|+++
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~----~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~ 342 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAM----ETANADIVTLLRLAKMREAEAAQGQAGDETYLD 342 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHHHC-----------------
T ss_pred HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHH----HCCCHHHHHHHHHcCCCcccccccCCCCCCHHH
Confidence 777777777777777777777777777777777777 666777777777554 333344455666663
No 139
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.86 E-value=1.1e-21 Score=185.25 Aligned_cols=124 Identities=23% Similarity=0.303 Sum_probs=86.9
Q ss_pred hHhHHHHHcCCHHHHHHHHhhCCCC-----ccCCCCCCCChHHHHHHhC---CcHHHHHHHHcCCCCCCcccccCcCCCC
Q 011578 15 ATIHGCAQSGDLLAFQRLLRENPSL-----LNERNPVMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQNMYGE 86 (482)
Q Consensus 15 t~l~~a~~~g~~~~v~~ll~~~~~~-----~~~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~g~ 86 (482)
++|+.|+..|+.+.+..++..+... ++..+.. |+||||+|+.. |+.+++++|++ .|+++|.+|..|+
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~-g~t~Lh~A~~~~~~~~~~~v~~Ll~----~ga~in~~d~~g~ 206 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEP-DETALHLAVRSVDRTSLHIVDFLVQ----NSGNLDKQTGKGS 206 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSST-TCBHHHHHHHHCCTTTHHHHHHHHH----HCSCTTCCCTTCC
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccC-CCCcchHHHHhcccchHHHHHHHHH----CCCCccccCCCCC
Confidence 5677777777777777776543322 2222443 77777777777 67777777777 4666777777777
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCChHHHHHHHhhCCCC
Q 011578 87 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 147 (482)
Q Consensus 87 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad 147 (482)
||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+ ..|+.+++++|+++|++
T Consensus 207 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~----~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 207 TALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK----RLKHEHCEELLTQALSG 263 (278)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHHHTT
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHH----HcCCHHHHHHHHHcCCC
Confidence 7777777777777777777777777777777777777777 66777777777777664
No 140
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.85 E-value=5e-22 Score=184.04 Aligned_cols=140 Identities=21% Similarity=0.259 Sum_probs=117.5
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHH
Q 011578 11 SAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH 90 (482)
Q Consensus 11 ~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh 90 (482)
..+.++++.++..|+.+.+..+. ..+.+++ . .|.||||+||..|+.+++++|++ +++++.+|..|+||||
T Consensus 13 ~~~~~~~l~~~~~g~~~~~~~~~-~~~~~~~---~-~g~t~L~~A~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~ 82 (244)
T 3ui2_A 13 GEGAMEYLIEWKDGHSPSWVPSS-YIAADVV---S-EYETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALL 82 (244)
T ss_dssp TTTEEEEEEEESSCCCCEEEEGG-GSCHHHH---H-HHHHHHHHHHTTTCHHHHHHTTT-----TCCTTCBCTTSCBHHH
T ss_pred CCCccHHHHHHHcCCCccccccc-ccccccc---c-CCCCHHHHHHHcCCHHHHHHHHc-----CCCCCCcCCCCCCHHH
Confidence 34556666666666655543322 2222222 2 28999999999999999999997 5688999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCccccc-cCCCcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhc
Q 011578 91 MAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 164 (482)
Q Consensus 91 ~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~ 164 (482)
+||..|+.+++++|+++|++++.+| ..|+||||+|+ ..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus 83 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~----~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~ 153 (244)
T 3ui2_A 83 FVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA----GYVRPEVVEALVELGADIEVEDERGLTALELARE 153 (244)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence 9999999999999999999999998 88999999999 8899999999999999999999999999977763
No 141
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.85 E-value=1.5e-21 Score=200.53 Aligned_cols=231 Identities=17% Similarity=0.213 Sum_probs=156.0
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 284 (482)
.++++|++.+++.+.+..... ...... +..+++|+||||||||++|+++|+.+.. ++..++++
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~-------~~~~~~---~g~~vll~Gp~GtGKTtlar~ia~~l~~-------~~~~i~~~ 142 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQ-------KLTKSL---KGPILCLAGPPGVGKTSLAKSIAKSLGR-------KFVRISLG 142 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHH-------HHSSSC---CSCEEEEESSSSSSHHHHHHHHHHHHTC-------EEEEECCC
T ss_pred HHHhccHHHHHHHHHHHHHHH-------HhcccC---CCCEEEEECCCCCCHHHHHHHHHHhcCC-------CeEEEEec
Confidence 356899999999987653211 111111 4668999999999999999999998864 66777665
Q ss_pred cccc---------cccccchhhHHHHHHhc--CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----------
Q 011578 285 DLVG---------EFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---------- 343 (482)
Q Consensus 285 ~~~~---------~~~g~~~~~~~~~~~~a--~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---------- 343 (482)
.+.. .|+|.....+.+.|..+ .++||||||+|.+.+.++. ...+.|++.|+.
T Consensus 143 ~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~-------~~~~~LL~~ld~~~~~~~~~~~ 215 (543)
T 3m6a_A 143 GVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRG-------DPSSAMLEVLDPEQNSSFSDHY 215 (543)
T ss_dssp C--------------------CHHHHHHTTCSSSEEEEEEESSSCC----------------CCGGGTCTTTTTBCCCSS
T ss_pred ccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhcc-------CHHHHHHHHHhhhhcceeeccc
Confidence 4322 57888888888888877 5689999999999986542 244778888864
Q ss_pred -------CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccc-cccCcccHHH
Q 011578 344 -------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSCSMDA 415 (482)
Q Consensus 344 -------~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~-~~~~~~~~~~ 415 (482)
..+++|+|++... . .+|+|++|| .+|+|+.|+.+++.+|++.++.+... ...++ .....+++++
T Consensus 216 ~~~~~~~~~v~iI~ttN~~~--~---l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~--~~~~~~~~~i~i~~~~ 287 (543)
T 3m6a_A 216 IEETFDLSKVLFIATANNLA--T---IPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQI--KEHGLKKSNLQLRDQA 287 (543)
T ss_dssp SCCCCBCSSCEEEEECSSTT--T---SCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHH--HHTTCCGGGCEECHHH
T ss_pred CCeeecccceEEEeccCccc--c---CCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHH--HHcCCCcccccCCHHH
Confidence 3457777755433 2 289999999 58999999999999999988743211 01122 1234678999
Q ss_pred HHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 416 IAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
+..++..+. .++|.|.+++.++.+++.+..++..+. .....|+.+|+.+++.
T Consensus 288 l~~l~~~~~-----~~~~vR~L~~~i~~~~~~aa~~~~~~~---~~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 288 ILDIIRYYT-----REAGVRSLERQLAAICRKAAKAIVAEE---RKRITVTEKNLQDFIG 339 (543)
T ss_dssp HHHHHHHHC-----CCSSSHHHHHHHHHHHHHHHHHHHTTC---CSCCEECTTTTHHHHC
T ss_pred HHHHHHhCC-----hhhchhHHHHHHHHHHHHHHHHHHhcC---CcceecCHHHHHHHhC
Confidence 999988664 268999999999999998877655321 2335688888888774
No 142
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.85 E-value=2.6e-21 Score=207.27 Aligned_cols=245 Identities=19% Similarity=0.270 Sum_probs=186.0
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.++++++++ +..+..++..+..++..++.+++|+||||||||++|++||+.+.. +++.++
T Consensus 201 v~~~di~G~~~~~~~l~e~---i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~-------~~i~v~ 270 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEM---VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLIN 270 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHH---HHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC-------EEEEEE
T ss_pred CCHHHhCChHHHHHHHHHH---HHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-------cEEEEE
Confidence 4688999999999999988 455667777777778888899999999999999999999997654 789999
Q ss_pred cccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC----CcEEEEEecCch
Q 011578 283 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE 355 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~----~~~~vi~~~~~~ 355 (482)
++++.+.+.|+.+..++.+|..+. ++|+||||+|.+.++++....+...+++++|++.+++ ..+++|++++..
T Consensus 271 ~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~ 350 (806)
T 1ypw_A 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (806)
T ss_dssp HHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCT
T ss_pred chHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCc
Confidence 999999999999999999998764 5899999999999988766777778889999999875 456777776544
Q ss_pred hHHHHHhcCccccC--CCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccC
Q 011578 356 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 433 (482)
Q Consensus 356 ~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (482)
.. .+|++++ ||+..+.++.|+.+++.+|++.++.+.. +..+.+...++..+. ...
T Consensus 351 ~~-----ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~---------l~~~~~l~~la~~t~---------g~~ 407 (806)
T 1ypw_A 351 NS-----IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK---------LADDVDLEQVANETH---------GHV 407 (806)
T ss_dssp TT-----SCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSC---------CCTTCCTHHHHHSCS---------SCC
T ss_pred hh-----cCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCC---------CcccchhHHHHHhhc---------Ccc
Confidence 32 2788887 9999999999999999999998876543 223333333333322 445
Q ss_pred cchhHHHHHHHHHHhhhhhcCCC------CCh--hhhhcccHHHHHHHHHHHHhc
Q 011578 434 GGLVDPMLVNARENLDLRLSFDC------LDT--DELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~~~r~~~~~------~~~--~~~~~i~~~d~~~al~~~~~~ 480 (482)
++++..++..|...+..+..... ... .....++.+|+..++....|.
T Consensus 408 g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s 462 (806)
T 1ypw_A 408 GADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCC
T ss_pred hHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCch
Confidence 67777777776665544322110 011 123367888999998877664
No 143
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.85 E-value=5.3e-21 Score=180.44 Aligned_cols=167 Identities=16% Similarity=0.097 Sum_probs=132.8
Q ss_pred CCCCCchHhHHHHHcCCHHHHHHHHhhCCCC-----ccCCC--------------------C-----CCCChHHHHHHhC
Q 011578 9 SRSAKPATIHGCAQSGDLLAFQRLLRENPSL-----LNERN--------------------P-----VMAQTPLHVSAGY 58 (482)
Q Consensus 9 ~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~-----~~~~~--------------------~-----~~g~tpLh~A~~~ 58 (482)
.+..+.++++.+...|+...... ++..-.. ++..+ . ....++||.|+..
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i-~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~ 140 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEI-MECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKT 140 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHH-HTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHcCcHHHHHH-HHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhh
Confidence 45567889999999998766543 4321110 00000 0 0024689999999
Q ss_pred CcHHHHHHHHcCCCCCCcc--cccCcCCCChHHHHHHHc---CCHHHHHHHHhCCCCccccccCCCcceeeehhhccCCC
Q 011578 59 NKAEIVKSLLEWPGNDKVE--LEAQNMYGETPLHMAAKN---GCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSE 133 (482)
Q Consensus 59 g~~~~v~~Ll~~~~~~~~~--~~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~~ 133 (482)
|+.+.+..++..|.+.... ++..|..|+||||+|+.. |+.+++++|+++|+++|.+|..|+||||+|+ ..|
T Consensus 141 ~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~----~~g 216 (278)
T 1dcq_A 141 RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC----LTD 216 (278)
T ss_dssp TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHH----HTT
T ss_pred cccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHH----HcC
Confidence 9999999999954332111 556688999999999999 8999999999999999999999999999999 889
Q ss_pred hHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHH
Q 011578 134 DYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 181 (482)
Q Consensus 134 ~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~ 181 (482)
+.+++++|+++|+|++.+|..|+||||+|+ ..++.+++++|+++|++
T Consensus 217 ~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~-~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 217 NAECLKLLLRGKASIEIANESGETPLDIAK-RLKHEHCEELLTQALSG 263 (278)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCCCCccCCCCCHHHHHH-HcCCHHHHHHHHHcCCC
Confidence 999999999999999999999999995555 56788999999988874
No 144
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.85 E-value=1.5e-20 Score=185.16 Aligned_cols=215 Identities=17% Similarity=0.202 Sum_probs=151.9
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 284 (482)
|++++|++..++.+..+...+. .+..++.++||+||||||||++|+++|+.+.. ..+++.+++.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~-----------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~-----~~~~~~~~~~ 106 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIR-----------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP-----DTPFTAIAGS 106 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHH-----------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS-----SCCEEEEEGG
T ss_pred hhhccChHHHHHHHHHHHHHHH-----------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc-----cCCcccccch
Confidence 6789999999998876654442 12224568999999999999999999998853 2366666655
Q ss_pred cccccc-------------------------------------------------cccchhhHHHHHHhcC---------
Q 011578 285 DLVGEF-------------------------------------------------VGHTGPKTRRRIKEAE--------- 306 (482)
Q Consensus 285 ~~~~~~-------------------------------------------------~g~~~~~~~~~~~~a~--------- 306 (482)
.+...+ .|+....+++.|..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~ 186 (368)
T 3uk6_A 107 EIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKA 186 (368)
T ss_dssp GGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC-
T ss_pred hhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccc
Confidence 433222 2222344455543321
Q ss_pred ---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC--cEEEEEec---------CchhHHHHHhcCccccCCCc
Q 011578 307 ---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--KVVVIFAG---------YSEPMKRVIASNEGFCRRVT 372 (482)
Q Consensus 307 ---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~--~~~vi~~~---------~~~~~~~~~~~~~~l~~R~~ 372 (482)
++||||||+|.+.+ .+.+.|+..++.. .+++++++ +.++... .+|++++||.
T Consensus 187 ~~~~~vl~IDEi~~l~~-----------~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~---l~~~l~sR~~ 252 (368)
T 3uk6_A 187 EIIPGVLFIDEVHMLDI-----------ESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHG---IPIDLLDRLL 252 (368)
T ss_dssp --CBCEEEEESGGGSBH-----------HHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETT---CCHHHHTTEE
T ss_pred cccCceEEEhhccccCh-----------HHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCccc---CCHHHHhhcc
Confidence 36999999999976 4558888888763 34444443 1122222 2788999995
Q ss_pred ceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhh
Q 011578 373 KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRL 452 (482)
Q Consensus 373 ~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~ 452 (482)
. +.|++|+.+++.+|++..+.... ..++++++..++...+ +|+.|.+.++++.|...+..+
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~-----------~~~~~~~l~~l~~~~~------~G~~r~~~~ll~~a~~~A~~~- 313 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEED-----------VEMSEDAYTVLTRIGL------ETSLRYAIQLITAASLVCRKR- 313 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTT-----------CCBCHHHHHHHHHHHH------HSCHHHHHHHHHHHHHHHHHT-
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHh-
Confidence 5 89999999999999999887642 3578889999988775 489999999999988775222
Q ss_pred cCCCCChhhhhcccHHHHHHHHHH
Q 011578 453 SFDCLDTDELRTITLEDLEAGLKL 476 (482)
Q Consensus 453 ~~~~~~~~~~~~i~~~d~~~al~~ 476 (482)
....|+.+|+.++++.
T Consensus 314 --------~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 314 --------KGTEVQVDDIKRVYSL 329 (368)
T ss_dssp --------TCSSBCHHHHHHHHHH
T ss_pred --------CCCCCCHHHHHHHHHH
Confidence 2357999999998876
No 145
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.85 E-value=1.3e-20 Score=181.18 Aligned_cols=218 Identities=17% Similarity=0.263 Sum_probs=156.1
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
++++|++.+++.+...+.... .+......+..+++|+||||||||++|+++|+.+... ..+++.++++.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~-------~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~----~~~~~~~~~~~ 85 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRAR-------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT----EEAMIRIDMTE 85 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHH-------HTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC----GGGEEEEEGGG
T ss_pred hhcCCHHHHHHHHHHHHHHHh-------cCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC----CcceEEeeccc
Confidence 357899999998887754331 2222222334579999999999999999999988642 23688888775
Q ss_pred ccc-----ccc-------ccch-hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC--------
Q 011578 286 LVG-----EFV-------GHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------- 344 (482)
Q Consensus 286 ~~~-----~~~-------g~~~-~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------- 344 (482)
+.. .++ |... ..+.+.+..+.++||||||+|.+.+ .+.+.|++.|+++
T Consensus 86 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~le~~~~~~~~~~ 154 (311)
T 4fcw_A 86 YMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP-----------DVFNILLQMLDDGRLTDSHGR 154 (311)
T ss_dssp CCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEECTTSC
T ss_pred ccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH-----------HHHHHHHHHHhcCEEEcCCCC
Confidence 432 223 3222 4566777778889999999999976 4558888888753
Q ss_pred -----cEEEEEecCch---------------hHHHHH------hcCccccCCCcceeeCCCCCHHHHHHHHHHHHhcccc
Q 011578 345 -----KVVVIFAGYSE---------------PMKRVI------ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTE 398 (482)
Q Consensus 345 -----~~~vi~~~~~~---------------~~~~~~------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~ 398 (482)
.+++|++++.. .+...+ ..+|+|.+||+..+.|++|+.+++..|++.++.+...
T Consensus 155 ~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~ 234 (311)
T 4fcw_A 155 TVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRA 234 (311)
T ss_dssp EEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHH
T ss_pred EEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 45577776652 111111 2378999999999999999999999999999887643
Q ss_pred ccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhh
Q 011578 399 DSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLR 451 (482)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r 451 (482)
..... .....++++++..+....| ..++|+|++++++++++.....+
T Consensus 235 ~~~~~--~~~~~~~~~~~~~l~~~~~----~~~gn~R~L~~~i~~~~~~~~~~ 281 (311)
T 4fcw_A 235 RLAEK--RISLELTEAAKDFLAERGY----DPVFGARPLRRVIQRELETPLAQ 281 (311)
T ss_dssp HHHTT--TCEEEECHHHHHHHHHHSC----BTTTBTTTHHHHHHHHTHHHHHH
T ss_pred HHHhC--CcEEEeCHHHHHHHHHhCC----CccCCchhHHHHHHHHHHHHHHH
Confidence 21111 2245789999999998765 23689999999999998865544
No 146
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.84 E-value=1.6e-20 Score=189.62 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=85.4
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|++.+++.+..++..+. .+..++.++||+||||||||++|+++|+.++. ..+|+.+++
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~-----------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~-----~~~~~~~~~ 98 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIK-----------SKKMAGRAVLLAGPPGTGKTALALAIAQELGS-----KVPFCPMVG 98 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHH-----------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT-----TSCEEEEEG
T ss_pred chhhccCHHHHHHHHHHHHHHHH-----------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC-----CceEEEEeH
Confidence 46889999999999988765442 12345678999999999999999999999863 238999999
Q ss_pred ccccccccccchhhHHHHHHhc------CCcEEEEecccccccCCC
Q 011578 284 TDLVGEFVGHTGPKTRRRIKEA------EGGILFVDEAYRLIPMQK 323 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~a------~~~vl~iDE~d~l~~~~~ 323 (482)
+++.++++|+++. +++.|+.+ .++||||||+|.+.+++.
T Consensus 99 ~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~ 143 (456)
T 2c9o_A 99 SEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCET 143 (456)
T ss_dssp GGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--
T ss_pred HHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccC
Confidence 9999999999987 89999887 359999999999986553
No 147
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=5.8e-21 Score=195.45 Aligned_cols=130 Identities=20% Similarity=0.199 Sum_probs=114.5
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCcccccC------cCCCChHHHHHHH---cCCHHHHHHHHhCCCCccccccCC
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ------NMYGETPLHMAAK---NGCNEAAKLLLAHGAFIEAKANNG 118 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~------~~~g~tpLh~A~~---~g~~~~v~~Ll~~ga~~~~~d~~g 118 (482)
..+.||.|+..|+.++|+.|++ .|+++|.+ |..|+||||+||. .|+.+++++|+++|+++|.+|.+|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~----~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g 207 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFA----NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG 207 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHH----TTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSS
T ss_pred cHHHHHHHHhccCHHHHHHHHh----hcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCC
Confidence 4478999999999999999999 56777766 8899999999976 899999999999999999999999
Q ss_pred CcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHHHHHHh
Q 011578 119 MTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 186 (482)
Q Consensus 119 ~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~~~~~~ 186 (482)
+||||+|+ ..|+.+++++|+++|+|++.+|..|+||||+ |...++.+++++|+++|++.....
T Consensus 208 ~TpLh~A~----~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~-A~~~~~~~~~~~Ll~~ga~~~~~~ 270 (497)
T 3lvq_E 208 NTALHYAA----LYNQPDCLKLLLKGRALVGTVNEAGETALDI-ARKKHHKECEELLEQAQAGTFAFP 270 (497)
T ss_dssp CCHHHHHT----TTTCHHHHHHHHHTCCCCSCCCTTCCCHHHH-HHHTTCHHHHHHHHHTCC------
T ss_pred CcHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH-HHHcCCHHHHHHHHHhCCCCCCCc
Confidence 99999999 8899999999999999999999999999955 555778999999999999987753
No 148
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.83 E-value=9.9e-21 Score=180.66 Aligned_cols=125 Identities=21% Similarity=0.212 Sum_probs=114.4
Q ss_pred CChHHHHHHhCCcHHHHHHHHcCCCCCCccccc------CcCCCChHHHHHHHc---CCHHHHHHHHhCCCCccccccCC
Q 011578 48 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA------QNMYGETPLHMAAKN---GCNEAAKLLLAHGAFIEAKANNG 118 (482)
Q Consensus 48 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~------~~~~g~tpLh~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g 118 (482)
+.++||+|+..|+.+.++.|++ .+++++. .+..|+||||+|+.. |+.+++++|+++|+++|.+|.+|
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~----~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G 226 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFA----NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG 226 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHH----TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTC
T ss_pred hHHHHhhhhhccCHHHHHHHHh----cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCC
Confidence 4467999999999999999998 5677777 689999999999997 89999999999999999999999
Q ss_pred CcceeeehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhHH
Q 011578 119 MTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 181 (482)
Q Consensus 119 ~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~~ 181 (482)
+||||+|+ ..|+.+++++|+++|+|++.+|..|+||||+|+ ..++.+++++|+++|++
T Consensus 227 ~TpLh~A~----~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~-~~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 227 NTALHYAA----LYNQPDCLKLLLKGRALVGTVNEAGETALDIAR-KKHHKECEELLEQAQAG 284 (301)
T ss_dssp CCHHHHHH----HTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHH-HHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH-HcCCHHHHHHHHHhcCC
Confidence 99999999 889999999999999999999999999995554 56788999999998886
No 149
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.83 E-value=2.8e-20 Score=144.83 Aligned_cols=93 Identities=38% Similarity=0.567 Sum_probs=85.8
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHH
Q 011578 12 AKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM 91 (482)
Q Consensus 12 ~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~ 91 (482)
.|.||||+||..|+.+.++.|+. .+.++|..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~d~~-g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~t~l~~ 74 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHL 74 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHH
Confidence 47899999999999999999985 57788999886 9999999999999999999999 588899999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCC
Q 011578 92 AAKNGCNEAAKLLLAHGAF 110 (482)
Q Consensus 92 A~~~g~~~~v~~Ll~~ga~ 110 (482)
|+..|+.+++++|+++|++
T Consensus 75 A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 75 AARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HHHTTCHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999985
No 150
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.83 E-value=8.6e-21 Score=185.34 Aligned_cols=124 Identities=23% Similarity=0.265 Sum_probs=114.2
Q ss_pred CChHHHHHHhC-CcHHHHHHHHcCCCCCCcccccCc--CCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcceee
Q 011578 48 AQTPLHVSAGY-NKAEIVKSLLEWPGNDKVELEAQN--MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL 124 (482)
Q Consensus 48 g~tpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~--~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpLh~ 124 (482)
+.||||+|+.. |+.+++++|++ .|++++..+ ..|.||||+|+..|+.+++++|+++|+++|.+|.+|+||||+
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~----~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~ 274 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALA----HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH 274 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHH----TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHH----cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 56899999999 99999999999 578888888 899999999999999999999999999999999999999999
Q ss_pred ehhhccCCChHHHHHHHhhCCCCccccCCCCCChhhhhhcCCCChHHHHHHHhhhH
Q 011578 125 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 180 (482)
Q Consensus 125 A~~~~~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~~a~~~~~~~~~~lL~~~~~ 180 (482)
|+ ..|+.+++++|+++|++++.+|..|.||||+|+ ..++.+++++|+..+.
T Consensus 275 A~----~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~-~~g~~~iv~lLl~~~~ 325 (368)
T 3jue_A 275 AT----ILGHTGLACLFLKRGADLGARDSEGRDPLTIAM-ETANADIVTLLRLAKM 325 (368)
T ss_dssp HH----HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHHHC
T ss_pred HH----HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHH-HCCCHHHHHHHHHcCC
Confidence 99 788999999999999999999999999995554 5678888889887764
No 151
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.82 E-value=1.4e-20 Score=152.64 Aligned_cols=109 Identities=33% Similarity=0.439 Sum_probs=98.7
Q ss_pred cCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCCh
Q 011578 8 RSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET 87 (482)
Q Consensus 8 ~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t 87 (482)
-.+..|.||||+||..|+.+.++.|+. .+.+++..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+|
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~-g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~d~~g~t 77 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLA----KGADVNARSKDGNT 77 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTT-TTCCSSCCCSS-SCCTTHHHHTTTCHHHHHHHTT----TTCCTTCCCTTCCC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCC-CCCHHHHHHHcCcHHHHHHHHH----cCCCCcccCCCCCC
Confidence 356789999999999999999999885 46778888876 9999999999999999999999 57889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccccCCCcce
Q 011578 88 PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPL 122 (482)
Q Consensus 88 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL 122 (482)
|||+|+..|+.+++++|+++|+++|.++..|.||-
T Consensus 78 pl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 78 PEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 99999999999999999999999999999999884
No 152
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.82 E-value=1.5e-19 Score=174.74 Aligned_cols=186 Identities=19% Similarity=0.247 Sum_probs=139.1
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|.+..++.+..++...... ...+.+++|+||||||||++|+++++.++. +++.+++
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~-----------~~~~~~vll~G~~GtGKT~la~~i~~~~~~-------~~~~~~~ 71 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKAR-----------KEPLEHLLLFGPPGLGKTTLAHVIAHELGV-------NLRVTSG 71 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHH-----------CSCCCCCEEECCTTCCCHHHHHHHHHHHTC-------CEEEECT
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHcc-----------CCCCCcEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEec
Confidence 4678999999999888875543210 124578999999999999999999998864 7777776
Q ss_pred ccccccccccchhhHHHHHHh--cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-----------------
Q 011578 284 TDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----------------- 344 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~--a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~----------------- 344 (482)
+.+.. ...+...|.. +.+++|||||++.+.+..+ +.|+..++..
T Consensus 72 ~~~~~------~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~-----------~~L~~~l~~~~~~~v~~~~~~~~~~~~ 134 (324)
T 1hqc_A 72 PAIEK------PGDLAAILANSLEEGDILFIDEIHRLSRQAE-----------EHLYPAMEDFVMDIVIGQGPAARTIRL 134 (324)
T ss_dssp TTCCS------HHHHHHHHTTTCCTTCEEEETTTTSCCHHHH-----------HHHHHHHHHSEEEECCSSSSSCCCEEE
T ss_pred cccCC------hHHHHHHHHHhccCCCEEEEECCcccccchH-----------HHHHHHHHhhhhHHhcccccccccccc
Confidence 65422 2345556665 5679999999999976333 5566666542
Q ss_pred ---cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHH
Q 011578 345 ---KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 421 (482)
Q Consensus 345 ---~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (482)
.+++|++|+.... .++++.+||+.++.|++|+.+++..+++.++.+.. ..++++++..+..
T Consensus 135 ~~~~~~~i~~t~~~~~-----~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~-----------~~~~~~~~~~l~~ 198 (324)
T 1hqc_A 135 ELPRFTLIGATTRPGL-----ITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-----------VRITEEAALEIGR 198 (324)
T ss_dssp ECCCCEEEEEESCCSS-----CSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT-----------CCCCHHHHHHHHH
T ss_pred CCCCEEEEEeCCCccc-----CCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHH
Confidence 3567777665432 27889999988999999999999999999887542 3467888888887
Q ss_pred HHhhHhhccccCcchhHHHHHHHHHH
Q 011578 422 KETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
.. .|+.|.+.++++.+...
T Consensus 199 ~~-------~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 199 RS-------RGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp HS-------CSCHHHHHHHHHHHTTT
T ss_pred Hc-------cCCHHHHHHHHHHHHHH
Confidence 63 68889999998887554
No 153
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.82 E-value=1.4e-19 Score=194.12 Aligned_cols=217 Identities=17% Similarity=0.286 Sum_probs=156.4
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
..++|++..++.+.+.+.... .+...+..+..++||+||||||||++|+++|+.+.. ...+|+.++++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~-------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~----~~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRAR-------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG----DEESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHT-------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS----CTTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHH-------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC----CCcceEEEechh
Confidence 458899998888887654332 222222223337999999999999999999998853 234899999999
Q ss_pred ccccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-------------EEEEEec
Q 011578 286 LVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-------------VVVIFAG 352 (482)
Q Consensus 286 ~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------------~~vi~~~ 352 (482)
+...+... ...+.+.+....++||||||||.+.+ .+.+.|++.|+++. +++|+||
T Consensus 560 ~~~~~~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 560 YMEKHSTS-GGQLTEKVRRKPYSVVLLDAIEKAHP-----------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp GCSSCCCC----CHHHHHHCSSSEEEEECGGGSCH-----------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred cccccccc-cchhhHHHHhCCCeEEEEeCccccCH-----------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 88776655 44556677788889999999999977 56688999998643 4777776
Q ss_pred Cc-----hhHHHHH--hcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhh
Q 011578 353 YS-----EPMKRVI--ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT 425 (482)
Q Consensus 353 ~~-----~~~~~~~--~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 425 (482)
+. +.....+ ...|+|++||+.+|.|++|+.+++.+|++.++.+..++.... .....++++++..++...+
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~--~~~~~~~~~a~~~l~~~~~- 704 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQ--DLSIELTDAAKAKVAEEGV- 704 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTT--TCEEEECHHHHHHHHGGGC-
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhC--CCeEEECHHHHHHHHHhCC-
Confidence 62 1111111 137999999999999999999999999999988765432211 2345689999999987422
Q ss_pred HhhccccCcchhHHHHHHHHHHhhhh
Q 011578 426 EKQRREMNGGLVDPMLVNARENLDLR 451 (482)
Q Consensus 426 ~~~~~~~~~~~l~~~~~~a~~~~~~r 451 (482)
..++|+|.+++++++++.....+
T Consensus 705 ---~~~~~~R~L~~~i~~~v~~~l~~ 727 (758)
T 3pxi_A 705 ---DLEYGARPLRRAIQKHVEDRLSE 727 (758)
T ss_dssp ---CTTTTTTTHHHHHHHHTHHHHHH
T ss_pred ---CCCCCChHHHHHHHHHHHHHHHH
Confidence 23799999999999988876544
No 154
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.81 E-value=1.9e-19 Score=193.47 Aligned_cols=210 Identities=17% Similarity=0.227 Sum_probs=153.6
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
.++|++.+++.+...+.. ...+......+..++||+||||||||++|+++|+.++. +++.++++++
T Consensus 459 ~v~g~~~~~~~l~~~i~~-------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~-------~~~~i~~s~~ 524 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKM-------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-------ELLRFDMSEY 524 (758)
T ss_dssp TSCSCHHHHHHHHHHHHH-------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC-------EEEEEEGGGC
T ss_pred hccCHHHHHHHHHHHHHH-------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC-------CEEEEechhh
Confidence 478898888887765432 22333333334457999999999999999999998853 7888888765
Q ss_pred ccc------------ccccc-hhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc--------
Q 011578 287 VGE------------FVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-------- 345 (482)
Q Consensus 287 ~~~------------~~g~~-~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------- 345 (482)
... |+|.. ...+.+.++.+.++||||||||++.+ ++++.|++.|+++.
T Consensus 525 ~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~-----------~~~~~Ll~~le~~~~~~~~g~~ 593 (758)
T 1r6b_X 525 MERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNILLQVMDNGTLTDNNGRK 593 (758)
T ss_dssp SSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTTEE
T ss_pred cchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCH-----------HHHHHHHHHhcCcEEEcCCCCE
Confidence 432 44432 23456778888899999999999976 67799999998643
Q ss_pred -----EEEEEecCchhH-------------------HHH-HhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhcccccc
Q 011578 346 -----VVVIFAGYSEPM-------------------KRV-IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDS 400 (482)
Q Consensus 346 -----~~vi~~~~~~~~-------------------~~~-~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~ 400 (482)
+++|+|++.... ..+ -...|+|++||+.+|.|++|+.+++..|++.++.+...+.
T Consensus 594 ~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~ 673 (758)
T 1r6b_X 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQL 673 (758)
T ss_dssp EECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 457777664210 000 0237999999999999999999999999999998654322
Q ss_pred ccccccccCcccHHHHHHHHHHHhhHhhccccC--cchhHHHHHHHHHHhh
Q 011578 401 LLYGFKLHSSCSMDAIAALIEKETTEKQRREMN--GGLVDPMLVNARENLD 449 (482)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~l~~~~~~a~~~~~ 449 (482)
... .+...++++++..++...| +++ +|.+++++++++....
T Consensus 674 ~~~--~~~~~~~~~a~~~l~~~~~------~~~~g~R~l~~~i~~~~~~~l 716 (758)
T 1r6b_X 674 DQK--GVSLEVSQEARNWLAEKGY------DRAMGARPMARVIQDNLKKPL 716 (758)
T ss_dssp HHT--TEEEEECHHHHHHHHHHHC------BTTTBTTTHHHHHHHHHTHHH
T ss_pred HHC--CcEEEeCHHHHHHHHHhCC------CcCCCchHHHHHHHHHHHHHH
Confidence 111 1234678999999999877 444 8999999999988643
No 155
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.80 E-value=8.8e-21 Score=185.94 Aligned_cols=153 Identities=12% Similarity=0.047 Sum_probs=120.9
Q ss_pred chHhHHHHH-cCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHH
Q 011578 14 PATIHGCAQ-SGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 92 (482)
Q Consensus 14 ~t~l~~a~~-~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A 92 (482)
.+.++.|+. .++.+.++.++.++. .+.||||+||..|+.++|++|+++++. ....+..+..|.||||+|
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~~~g~---------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~-~~~~~~~~~~~~tpL~~A 135 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAHKKGI---------KSEVICFVAAITGCSSALDTLCLLLTS-DEIVKVIQAENYQAFRLA 135 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHHTC---------CHHHHHHHHHHHCCHHHHHHHTTC--C-CSSCC--CHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCC---------CcCCHHHHHHHcCCHHHHHHHHHcCCc-HHHHHHhccCCCCHHHHH
Confidence 346666665 467777777775432 167999999999999999999996431 112234455688999999
Q ss_pred HHcCCHHHHHHHHhCCCC---ccccccCCCcceeeehhhccCCChHHHHHHHhhCCCCccc--cCCCCCChhhhhhcCCC
Q 011578 93 AKNGCNEAAKLLLAHGAF---IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSA--KDNEGKTPLDHLSNGPG 167 (482)
Q Consensus 93 ~~~g~~~~v~~Ll~~ga~---~~~~d~~g~tpLh~A~~~~~~~~~~~~v~~Ll~~gad~~~--~d~~g~tpl~~~a~~~~ 167 (482)
|..|+.++|++|+++|++ ++..+.+ +||||+|+ ..|+.++|++|+++|++++. +|..|+||||+||...+
T Consensus 136 a~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa----~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G 210 (376)
T 2aja_A 136 AENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA----ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG 210 (376)
T ss_dssp HHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH----HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH----HCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCC
Confidence 999999999999999986 3333334 99999999 89999999999999999988 89999999966553788
Q ss_pred ChHHHHHHHhhhHH
Q 011578 168 SAKLRELLLWHSEE 181 (482)
Q Consensus 168 ~~~~~~lL~~~~~~ 181 (482)
+.+++++|+++|+.
T Consensus 211 ~~eiv~~Ll~~ga~ 224 (376)
T 2aja_A 211 HHNVINFLLDCPVM 224 (376)
T ss_dssp CHHHHHHHTTSHHH
T ss_pred CHHHHHHHHhCCCc
Confidence 99999999998764
No 156
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.80 E-value=1.2e-19 Score=170.07 Aligned_cols=208 Identities=16% Similarity=0.183 Sum_probs=141.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|.+.....+.+.+... .....+++|+||||||||++|+++++.+. ....+|+.++
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~--------------~~~~~~vll~G~~GtGKt~la~~i~~~~~----~~~~~~~~v~ 64 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHL--------------APLDKPVLIIGERGTGKELIASRLHYLSS----RWQGPFISLN 64 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH--------------TTSCSCEEEECCTTSCHHHHHHHHHHTST----TTTSCEEEEE
T ss_pred cccccceeCCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCcHHHHHHHHHHhcC----ccCCCeEEEe
Confidence 36788999988888777665433 12457899999999999999999998553 2235899999
Q ss_pred ccccccc-----ccccchh-------hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC------
Q 011578 283 RTDLVGE-----FVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------ 344 (482)
Q Consensus 283 ~~~~~~~-----~~g~~~~-------~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~------ 344 (482)
++.+... .+|.... .....|..+.+++|||||++.+.+. +...|++.|+.+
T Consensus 65 ~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g 133 (265)
T 2bjv_A 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMM-----------VQEKLLRVIEYGELERVG 133 (265)
T ss_dssp GGGSCHHHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCHH-----------HHHHHHHHHHHCEECCCC
T ss_pred cCCCChhHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCHH-----------HHHHHHHHHHhCCeecCC
Confidence 8875322 2332111 1123566778899999999999873 336777777643
Q ss_pred -------cEEEEEecCchhHHHHH--hcCccccCCCc-ceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCccc
Q 011578 345 -------KVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCS 412 (482)
Q Consensus 345 -------~~~vi~~~~~~~~~~~~--~~~~~l~~R~~-~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~ 412 (482)
.+.+|++++.+....+- ...+.|.+||. ..+.+|+++. +++..+++.++++.... ++......++
T Consensus 134 ~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~---~~~~~~~~~~ 210 (265)
T 2bjv_A 134 GSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCRE---IKLPLFPGFT 210 (265)
T ss_dssp C--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHH---TTCSSCCCBC
T ss_pred CcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHH---hCCCcccCcC
Confidence 46788887765433221 12578888994 5788898885 78888888888765421 1222213689
Q ss_pred HHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 413 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 413 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
++++..+....| ++|.|+++++++.+....
T Consensus 211 ~~a~~~L~~~~~------~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 211 ERARETLLNYRW------PGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHHHHHHHHSCC------TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC------CCCHHHHHHHHHHHHHhC
Confidence 999999988777 899999999999988654
No 157
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.80 E-value=1.2e-18 Score=189.09 Aligned_cols=219 Identities=17% Similarity=0.274 Sum_probs=156.3
Q ss_pred HhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 011578 205 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (482)
Q Consensus 205 l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 284 (482)
++.++|++..++.+...+.... .+......+..+++|+||||||||++|++||+.+... ..+|+.++++
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~-------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~----~~~~i~i~~~ 625 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRAR-------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT----EEAMIRIDMT 625 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHG-------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS----GGGEEEECTT
T ss_pred hcccCCcHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC----CCcEEEEech
Confidence 3568899988888877654321 2222222234589999999999999999999988531 2378888887
Q ss_pred ccccc------------ccccch-hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-------
Q 011578 285 DLVGE------------FVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 344 (482)
Q Consensus 285 ~~~~~------------~~g~~~-~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~------- 344 (482)
.+... |+|... ..+.+.+....++||||||++.+.+ .+++.|++.|+++
T Consensus 626 ~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~g 694 (854)
T 1qvr_A 626 EYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHP-----------DVFNILLQILDDGRLTDSHG 694 (854)
T ss_dssp TCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCH-----------HHHHHHHHHHTTTEECCSSS
T ss_pred hccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCH-----------HHHHHHHHHhccCceECCCC
Confidence 65432 445543 5567777778889999999999876 6679999999875
Q ss_pred ------cEEEEEecCchh---------------HHHHH------hcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 345 ------KVVVIFAGYSEP---------------MKRVI------ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 345 ------~~~vi~~~~~~~---------------~~~~~------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
.++||+|++... +...+ .-.|+|.+||+.++.|++|+.+++..|++.++.+..
T Consensus 695 ~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~ 774 (854)
T 1qvr_A 695 RTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLR 774 (854)
T ss_dssp CCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHH
T ss_pred CEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 456777766411 11111 125889999999999999999999999999998765
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhh
Q 011578 398 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLR 451 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r 451 (482)
.+.... .....++++++..++.+.| ..++|+|.+++++++++.....+
T Consensus 775 ~~~~~~--~~~~~~~~~a~~~L~~~~~----~~~gn~R~L~~~i~~~~~~~~~~ 822 (854)
T 1qvr_A 775 ARLAEK--RISLELTEAAKDFLAERGY----DPVFGARPLRRVIQRELETPLAQ 822 (854)
T ss_dssp HHHHTT--TCEEEECHHHHHHHHHHHC----BTTTBTSTHHHHHHHHTHHHHHH
T ss_pred HHHHhC--CceEEECHHHHHHHHHcCC----CCCCChHHHHHHHHHHHHHHHHH
Confidence 422111 1235689999999999876 23689999999999988776544
No 158
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.79 E-value=1e-19 Score=173.48 Aligned_cols=203 Identities=20% Similarity=0.226 Sum_probs=146.7
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
+++|.+...+.+.+.+..+ .....+++|+||||||||++|+++++.+. ....+|+.++++.+
T Consensus 3 ~iig~s~~~~~~~~~~~~~--------------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~----~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV--------------APSDATVLIHGDSGTGKELVARALHACSA----RSDRPLVTLNCAAL 64 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH--------------CSTTSCEEEESCTTSCHHHHHHHHHHHSS----CSSSCCCEEECSSC
T ss_pred CcEECCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCchHHHHHHHHHHhCc----ccCCCeEEEeCCCC
Confidence 4778887777777665443 23567899999999999999999998543 23458899998775
Q ss_pred cc-----cccccch-------hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc---------
Q 011578 287 VG-----EFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--------- 345 (482)
Q Consensus 287 ~~-----~~~g~~~-------~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--------- 345 (482)
.. .++|+.. ......|+.+.+++||||||+.+... ....|+..++.+.
T Consensus 65 ~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~~~ 133 (304)
T 1ojl_A 65 NESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPL-----------MQVRLLRAIQEREVQRVGSNQT 133 (304)
T ss_dssp CHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHH-----------HHHHHHHHHHSSBCCBTTBCCC
T ss_pred ChHHHHHHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCHH-----------HHHHHHHHHhcCEeeecCCccc
Confidence 43 2344311 12335678888999999999999873 3377788777643
Q ss_pred ----EEEEEecCchhHHHHHh--cCccccCCC-cceeeCCCCC--HHHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 346 ----VVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 346 ----~~vi~~~~~~~~~~~~~--~~~~l~~R~-~~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
+.+|++|+.+....+.. -++.|.+|| ...|.+|++. .+++..+++.++.+.... ++. ....++++++
T Consensus 134 ~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~---~~~-~~~~~s~~a~ 209 (304)
T 1ojl_A 134 ISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAER---NRK-VVKGFTPQAM 209 (304)
T ss_dssp CBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHH---TTC-CCCCBCHHHH
T ss_pred ccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHH---hcc-CccCCCHHHH
Confidence 77888877664332211 256778888 4558889988 688999999888765421 111 2246899999
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
..+..+.| +||.|+++++++++....
T Consensus 210 ~~L~~~~w------pGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 210 DLLIHYDW------PGNIRELENAIERAVVLL 235 (304)
T ss_dssp HHHHHCCC------SSHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCC------CCCHHHHHHHHHHHHHhC
Confidence 99999888 999999999999998764
No 159
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.77 E-value=9.9e-18 Score=158.66 Aligned_cols=242 Identities=8% Similarity=-0.010 Sum_probs=155.2
Q ss_pred hhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---CCCCeEEeecc
Q 011578 208 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRVTEVQRT 284 (482)
Q Consensus 208 i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~---~~~~~~~~~~~ 284 (482)
+.+.++..+.+...+... +....+.+++++||||||||++++.+++++...... ....++.+++.
T Consensus 22 L~~Re~E~~~i~~~L~~~------------i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~ 89 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDS------------LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL 89 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT
T ss_pred cCCHHHHHHHHHHHHHHH------------hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc
Confidence 556666666666554333 123477899999999999999999999999753211 12357788876
Q ss_pred cccc----------cccc------cchhhHHHHHHhc-----CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhh--
Q 011578 285 DLVG----------EFVG------HTGPKTRRRIKEA-----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM-- 341 (482)
Q Consensus 285 ~~~~----------~~~g------~~~~~~~~~~~~a-----~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l-- 341 (482)
.+.+ ++.| ++...+.+.|... ...||||||+|.|. .| +++..|+++.
T Consensus 90 ~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q--------~~L~~l~~~~~~ 159 (318)
T 3te6_A 90 ELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SE--------KILQYFEKWISS 159 (318)
T ss_dssp CCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CT--------HHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cc--------hHHHHHHhcccc
Confidence 5432 2223 3455677788753 23799999999998 34 5666666543
Q ss_pred cCCcEEEEEecCch-hHHHHHhcCccccCCCc-ceeeCCCCCHHHHHHHHHHHHhccccccc-----c------------
Q 011578 342 DGGKVVVIFAGYSE-PMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSL-----L------------ 402 (482)
Q Consensus 342 ~~~~~~vi~~~~~~-~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~-----~------------ 402 (482)
+.+++++|+.++.- -.... .++++++||. .+|.|++|+.+|+.+|++..++......+ .
T Consensus 160 ~~s~~~vI~i~n~~d~~~~~--L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~ 237 (318)
T 3te6_A 160 KNSKLSIICVGGHNVTIREQ--INIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREG 237 (318)
T ss_dssp SSCCEEEEEECCSSCCCHHH--HHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC---
T ss_pred cCCcEEEEEEecCcccchhh--cchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccc
Confidence 44677777765432 22222 1678889995 68999999999999999999987532100 0
Q ss_pred ------ccc-cccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 403 ------YGF-KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 403 ------~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
.++ +....++++++...++... ...|+.|..-+++++|...+-..........+....||.+.+..++.
T Consensus 238 ~~~~~~~~~~~~~~~i~~~ai~~~A~~vA----~~~GD~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~ 313 (318)
T 3te6_A 238 QNQKIPDNVIVINHKINNKITQLIAKNVA----NVSGSTEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFS 313 (318)
T ss_dssp -----CTTEEEECEECCHHHHHHHHHHHH----HHHCSHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHH
T ss_pred ccccccccccccccccCHHHHHHHHHHHH----hhCChHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHH
Confidence 011 1223568899988887532 11577888888888888876443221111112345677776666665
Q ss_pred HH
Q 011578 476 LL 477 (482)
Q Consensus 476 ~~ 477 (482)
++
T Consensus 314 ~~ 315 (318)
T 3te6_A 314 EA 315 (318)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 160
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.76 E-value=8.1e-18 Score=158.25 Aligned_cols=189 Identities=12% Similarity=0.157 Sum_probs=125.0
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccch----hhHHHHHHhc---CCcEEEEe
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG----PKTRRRIKEA---EGGILFVD 313 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~a---~~~vl~iD 313 (482)
.++.++||+||||||||++|+++|+.++. +|+.+++++ .++|... ..++.+|+.+ .++|||||
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~-------~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iD 131 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNF-------PFIKICSPD---KMIGFSETAKCQAMKKIFDDAYKSQLSCVVVD 131 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTC-------SEEEEECGG---GCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEC
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEeCHH---HhcCCchHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 46678999999999999999999998754 788887764 3444432 4566777764 46999999
Q ss_pred cccccccCCCCCCChhHHHHHHHHHhhhcC-----CcEEEEEecCchhHHHHHhcCc-cccCCCcceeeCCCCCH-HHHH
Q 011578 314 EAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYSEPMKRVIASNE-GFCRRVTKFFHFNDFNS-EELA 386 (482)
Q Consensus 314 E~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~~vi~~~~~~~~~~~~~~~~-~l~~R~~~~i~~~~~~~-~~~~ 386 (482)
|+|.+...+..+ ......+++.|...++. ..+++|++|+..... ++ .+.+||+..|.+|+++. +++.
T Consensus 132 Eid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l-----~~~~l~~rf~~~i~~p~l~~r~~i~ 205 (272)
T 1d2n_A 132 DIERLLDYVPIG-PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL-----QEMEMLNAFSTTIHVPNIATGEQLL 205 (272)
T ss_dssp CHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHH-----HHTTCTTTSSEEEECCCEEEHHHHH
T ss_pred ChhhhhccCCCC-hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhc-----chhhhhcccceEEcCCCccHHHHHH
Confidence 999997654322 22234556666666653 345666665544322 33 67889999999998886 6666
Q ss_pred HHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhccc
Q 011578 387 KILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTIT 466 (482)
Q Consensus 387 ~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~ 466 (482)
.++... ..++.+.+..++....+ ..-+++.|.+.++++.|.... ....
T Consensus 206 ~i~~~~----------------~~~~~~~~~~l~~~~~g--~~~~g~ir~l~~~l~~a~~~~--------------~~~~ 253 (272)
T 1d2n_A 206 EALELL----------------GNFKDKERTTIAQQVKG--KKVWIGIKKLLMLIEMSLQMD--------------PEYR 253 (272)
T ss_dssp HHHHHH----------------TCSCHHHHHHHHHHHTT--SEEEECHHHHHHHHHHHTTSC--------------GGGH
T ss_pred HHHHhc----------------CCCCHHHHHHHHHHhcC--CCccccHHHHHHHHHHHhhhc--------------hHHH
Confidence 666541 13466777777765532 111457888888888775432 1245
Q ss_pred HHHHHHHHHHH
Q 011578 467 LEDLEAGLKLL 477 (482)
Q Consensus 467 ~~d~~~al~~~ 477 (482)
.+++..++...
T Consensus 254 ~~~~~~~l~~~ 264 (272)
T 1d2n_A 254 VRKFLALLREE 264 (272)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 56666666554
No 161
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.76 E-value=2e-17 Score=150.41 Aligned_cols=203 Identities=23% Similarity=0.229 Sum_probs=138.8
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.+++++|.+..++.+.+++.. ....+++|+||||||||++|+.+++.+...+. ...++.+++
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~----------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~--~~~~~~~~~ 76 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVER----------------KNIPHLLFSGPPGTGKTATAIALARDLFGENW--RDNFIEMNA 76 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHT----------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGG--GGGEEEEET
T ss_pred CHHHHcCcHHHHHHHHHHHhC----------------CCCCeEEEECCCCCCHHHHHHHHHHHHhcccc--ccceEEecc
Confidence 467789999998888876421 13346999999999999999999998854221 225667766
Q ss_pred ccccccccccchhhHHHHHH-----hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchh
Q 011578 284 TDLVGEFVGHTGPKTRRRIK-----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP 356 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~-----~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~ 356 (482)
+...+. ......+..... ...++||||||+|.+.+. ..+.|+..++. ..+++|++++...
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 77 SDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----------AQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp TCTTCH--HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred ccccCh--HHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-----------HHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 543221 001111222222 145689999999999763 23556655553 3455555544332
Q ss_pred HHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcch
Q 011578 357 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL 436 (482)
Q Consensus 357 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 436 (482)
. .++++.+||. .+.|++|+.+++.++++..+.+.. ..++.+++..+.... .||.+.
T Consensus 144 ~-----~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~l~~~~-------~g~~r~ 199 (226)
T 2chg_A 144 R-----IIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEG-----------VKITEDGLEALIYIS-------GGDFRK 199 (226)
T ss_dssp G-----SCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHHHHHHHH-------TTCHHH
T ss_pred h-----cCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc-------CCCHHH
Confidence 1 2788899996 999999999999999998876532 236778888887644 688888
Q ss_pred hHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 437 VDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 437 l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
+.++++.+.... ..|+.+|+.+++.
T Consensus 200 l~~~l~~~~~~~--------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 200 AINALQGAAAIG--------------EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHTC--------------SCBCHHHHHHHHH
T ss_pred HHHHHHHHHhcC--------------ceecHHHHHHHhc
Confidence 888888776532 4799999999875
No 162
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.75 E-value=5.3e-18 Score=173.66 Aligned_cols=201 Identities=15% Similarity=0.172 Sum_probs=132.4
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCC---CCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA---RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 280 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~ 280 (482)
.|++++|.+..++.+.+++..... .........+. ..+.+++|+||||||||++|+++|++++. ++++
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~--~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~-------~~i~ 107 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWEN--SKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY-------DILE 107 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHH--HHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC-------EEEE
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHh--hchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC-------CEEE
Confidence 578899999999999988654321 11111111221 24568999999999999999999998854 8889
Q ss_pred eecccccccccccchh-------hHHHHHHh--------cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc
Q 011578 281 VQRTDLVGEFVGHTGP-------KTRRRIKE--------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK 345 (482)
Q Consensus 281 ~~~~~~~~~~~g~~~~-------~~~~~~~~--------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 345 (482)
+++++.....+.+... .+...|.. ..++||||||+|.+....+ ..++.|+..++...
T Consensus 108 in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--------~~l~~L~~~l~~~~ 179 (516)
T 1sxj_A 108 QNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRKTS 179 (516)
T ss_dssp ECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------THHHHHHHHHHHCS
T ss_pred EeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH--------HHHHHHHHHHHhcC
Confidence 9988765543322110 12233332 3458999999999987544 34566776666533
Q ss_pred --EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHH
Q 011578 346 --VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 423 (482)
Q Consensus 346 --~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (482)
+++++++...+. .+++.+|+ ..+.|++|+.+++.+++...+.+.. ..++++++..++...
T Consensus 180 ~~iIli~~~~~~~~------l~~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~-----------~~i~~~~l~~la~~s 241 (516)
T 1sxj_A 180 TPLILICNERNLPK------MRPFDRVC-LDIQFRRPDANSIKSRLMTIAIREK-----------FKLDPNVIDRLIQTT 241 (516)
T ss_dssp SCEEEEESCTTSST------TGGGTTTS-EEEECCCCCHHHHHHHHHHHHHHHT-----------CCCCTTHHHHHHHHT
T ss_pred CCEEEEEcCCCCcc------chhhHhce-EEEEeCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc
Confidence 333333222111 24455554 7999999999999999988776542 235667788777654
Q ss_pred hhHhhccccCcchhHHHHHHHHH
Q 011578 424 TTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 424 ~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
.|+.|.+.++++.+..
T Consensus 242 -------~GdiR~~i~~L~~~~~ 257 (516)
T 1sxj_A 242 -------RGDIRQVINLLSTIST 257 (516)
T ss_dssp -------TTCHHHHHHHHTHHHH
T ss_pred -------CCcHHHHHHHHHHHHh
Confidence 5777888787776543
No 163
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.75 E-value=1.3e-17 Score=168.41 Aligned_cols=202 Identities=18% Similarity=0.234 Sum_probs=134.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCC---CCCCCeEE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTE 280 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~---~~~~~~~~ 280 (482)
.++.++|.+..++.+...+. .....++||+||||||||++|+++|+.+..... ....+++.
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~----------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLS----------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHH----------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred CCCCccCcHHHHHHHHHHHh----------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 46789999999888877632 124568999999999999999999999864221 23456777
Q ss_pred eecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhH
Q 011578 281 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM 357 (482)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~ 357 (482)
++++ +.|.|+.+..++.+|..+. ++||||| .. ..+.+.|+..|+.+.+++|++|+.+.+
T Consensus 242 l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~-----------~~a~~~L~~~L~~g~v~vI~at~~~e~ 303 (468)
T 3pxg_A 242 LDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID----AA-----------IDASNILKPSLARGELQCIGATTLDEY 303 (468)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC----C-------------------CCCTTSSSCEEEEECCTTTT
T ss_pred eeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe----Cc-----------hhHHHHHHHhhcCCCEEEEecCCHHHH
Confidence 7776 6788888788888887554 6999999 11 134488999999999999999998887
Q ss_pred HHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchh
Q 011578 358 KRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLV 437 (482)
Q Consensus 358 ~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 437 (482)
...+..+|++.+||. .|.|+.|+.+++.+|++.++.+... .....++++++..+.....+. .....-.+..
T Consensus 304 ~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~-------~~~~~i~~~al~~l~~~s~~~-~~~~~lp~~a 374 (468)
T 3pxg_A 304 RKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEA-------HHRVSITDDAIEAAVKLSDRY-ISDRFLPDKA 374 (468)
T ss_dssp HHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGG-------GSSCSCCHHHHHHHHHHHHHS-SCCSCTTHHH
T ss_pred HHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHH-------hcCCCCCHHHHHHHHHHHHHH-hccCcCCcHH
Confidence 666667999999995 6999999999999999987766432 123456777777777654321 1111112344
Q ss_pred HHHHHHHHHHh
Q 011578 438 DPMLVNARENL 448 (482)
Q Consensus 438 ~~~~~~a~~~~ 448 (482)
.++++.|....
T Consensus 375 i~ll~~a~~~~ 385 (468)
T 3pxg_A 375 IDLIDEAGSKV 385 (468)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666665544
No 164
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.75 E-value=7.4e-19 Score=141.31 Aligned_cols=91 Identities=29% Similarity=0.396 Sum_probs=68.7
Q ss_pred CCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCCChHHHHHHHcCCHHHHHHHHhCCCCccccccCCCcc
Q 011578 42 ERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTP 121 (482)
Q Consensus 42 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tp 121 (482)
..+.. |+||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus 19 ~~~~~-g~t~L~~A~~~g~~~~v~~Ll~----~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 93 (110)
T 2zgd_A 19 HMGSD-LGKKLLEAARAGQDDEVRILMA----NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA 93 (110)
T ss_dssp ---CC-HHHHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ccCCc-cchHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcH
Confidence 33443 7788888888888888888887 466777777778888888888888888888888888888888888888
Q ss_pred eeeehhhccCCChHHHHHHH
Q 011578 122 LHLSVWYSIRSEDYATVKTL 141 (482)
Q Consensus 122 Lh~A~~~~~~~~~~~~v~~L 141 (482)
||+|+ ..|+.+++++|
T Consensus 94 l~~A~----~~~~~~~~~~L 109 (110)
T 2zgd_A 94 FDISI----DNGNEDLAEIL 109 (110)
T ss_dssp HHHHH----HHTCHHHHHHH
T ss_pred HHHHH----HcCCHHHHHHh
Confidence 88888 66777777765
No 165
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.75 E-value=2.9e-18 Score=167.46 Aligned_cols=233 Identities=17% Similarity=0.134 Sum_probs=141.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCC-------
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 275 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~------- 275 (482)
..|++++|++.+++.+.... + .....++||+||||||||++|+++++.+........
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~--~--------------~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTA--V--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHH--H--------------CGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCchhccChHHHHHHHHHHh--h--------------CCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 35778999998776543221 1 113457999999999999999999997742100000
Q ss_pred -------------------CCeEEeecccccccccccch----------hhHHHHHHhcCCcEEEEecccccccCCCCCC
Q 011578 276 -------------------DRVTEVQRTDLVGEFVGHTG----------PKTRRRIKEAEGGILFVDEAYRLIPMQKADD 326 (482)
Q Consensus 276 -------------------~~~~~~~~~~~~~~~~g~~~----------~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~ 326 (482)
.+++.+........++|... ......+..+.++||||||++.+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~----- 159 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH----- 159 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH-----
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH-----
Confidence 12222222111122333200 00112344556899999999999873
Q ss_pred ChhHHHHHHHHHhhhcCC---------------cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCC-CHHHHHHHHH
Q 011578 327 KDYGIEALEEIMSVMDGG---------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDF-NSEELAKILH 390 (482)
Q Consensus 327 ~~~~~~~~~~ll~~l~~~---------------~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~-~~~~~~~il~ 390 (482)
+.+.|++.|+.+ .+++|+++++... ..++++++||+..+.+++| +.+++.+|++
T Consensus 160 ------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~----~l~~~L~~R~~~~~~l~~~~~~~~~~~il~ 229 (350)
T 1g8p_A 160 ------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEG----DLRPQLLDRFGLSVEVLSPRDVETRVEVIR 229 (350)
T ss_dssp ------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSC----CCCHHHHTTCSEEEECCCCCSHHHHHHHHH
T ss_pred ------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCC----CCCHHHHhhcceEEEcCCCCcHHHHHHHHH
Confidence 447777777653 5778887664321 1378999999888999999 5777778887
Q ss_pred HHHhcccc-----------------cc-ccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhh
Q 011578 391 IKMNNQTE-----------------DS-LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRL 452 (482)
Q Consensus 391 ~~l~~~~~-----------------~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~ 452 (482)
..+..... .. ..........++++++..+....++.. ..+.|.+.++++.|...+..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~---~~~~R~~~~ll~~a~~~A~~~- 305 (350)
T 1g8p_A 230 RRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALG---SDGLRGELTLLRSARALAALE- 305 (350)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSS---SCSHHHHHHHHHHHHHHHHHT-
T ss_pred HHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhC---CCCccHHHHHHHHHHHHHHHc-
Confidence 74321100 00 000001123678899999998877211 113488888888877665221
Q ss_pred cCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 453 SFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 453 ~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
....|+.+|+.+|+..+.
T Consensus 306 --------~~~~v~~~~v~~a~~~~l 323 (350)
T 1g8p_A 306 --------GATAVGRDHLKRVATMAL 323 (350)
T ss_dssp --------TCSBCCHHHHHHHHHHHH
T ss_pred --------CCCcCCHHHHHHHHHHHH
Confidence 223589999999888764
No 166
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.75 E-value=2.9e-17 Score=176.51 Aligned_cols=243 Identities=16% Similarity=0.208 Sum_probs=166.7
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCC---CCCCCeE
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVT 279 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~---~~~~~~~ 279 (482)
..|+.++|.+...+++.+.+. .....+++|+||||||||++|+++|+.+..... .....++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~----------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~ 246 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLC----------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred CCCCCccCCHHHHHHHHHHHh----------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence 356789999988887776521 235678999999999999999999999864322 1234567
Q ss_pred Eeeccccc--ccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 280 EVQRTDLV--GEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 280 ~~~~~~~~--~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
.++.+.+. .++.|+.+..++.+|+.+. ++||||||+|.+.+..... +....+.+.|...++.+.+.+|++++.
T Consensus 247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--~~~~~~~~~L~~~l~~~~~~~I~at~~ 324 (758)
T 1r6b_X 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_dssp ECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS--SCHHHHHHHHSSCSSSCCCEEEEEECH
T ss_pred EEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC--cchHHHHHHHHHHHhCCCeEEEEEeCc
Confidence 77766665 4578888888888887654 5999999999998765422 223466677888888999999999887
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCc
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 434 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 434 (482)
..+...+..+|++.+||. .+.|+.|+.+++.+|++..+..... .....++.+++..++....+.-. .....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~-------~~~v~~~~~al~~~~~~s~~~i~-~~~lp 395 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEA-------HHDVRYTAKAVRAAVELAVKYIN-DRHLP 395 (758)
T ss_dssp HHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHH-------HHTCCCCHHHHHHHHHHHHHHCT-TSCTT
T ss_pred hHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHH-------hcCCCCCHHHHHHHHHHhhhhcc-cccCc
Confidence 776555566899999996 7999999999999999987765321 12245667777766654432111 11122
Q ss_pred chhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 435 GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 435 ~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
..+..++++|.......-. ......|+.+|+.+++..+
T Consensus 396 ~~~i~lld~a~~~~~~~~~-----~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 396 DKAIDVIDEAGARARLMPV-----SKRKKTVNVADIESVVARI 433 (758)
T ss_dssp HHHHHHHHHHHHHHHHSSS-----CCCCCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccc-----cccCCccCHHHHHHHHHHh
Confidence 3456677776654321100 0122467888888887765
No 167
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.74 E-value=7.3e-18 Score=166.87 Aligned_cols=231 Identities=16% Similarity=0.077 Sum_probs=151.5
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCC--CCCCCeEEeec
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI--LPTDRVTEVQR 283 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~--~~~~~~~~~~~ 283 (482)
++++|.+...+.+..++... .....+.+++|+||||||||++|+++++.+..... ....+++.+++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~------------~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPA------------LRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGG------------TSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred CCCCCHHHHHHHHHHHHHHH------------HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 56899999888888764322 11245678999999999999999999998843200 01236777886
Q ss_pred cccccc----------------ccccchhh-HHHHHHh---c-CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhc
Q 011578 284 TDLVGE----------------FVGHTGPK-TRRRIKE---A-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 342 (482)
Q Consensus 284 ~~~~~~----------------~~g~~~~~-~~~~~~~---a-~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~ 342 (482)
...... ..|.+... ...++.. . ...||||||+|.+...+ ....++..++..++
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQ 160 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGG
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchh
Confidence 643211 11222222 2233322 1 24699999999997652 12367777777776
Q ss_pred ----CCcEEEEEecCchhHHHHHhcCccccCCCcc-eeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHH
Q 011578 343 ----GGKVVVIFAGYSEPMKRVIASNEGFCRRVTK-FFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 417 (482)
Q Consensus 343 ----~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~-~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 417 (482)
...+++|++++..+... ..++.+.+||.. .+.|++|+.+++.+|++..+..... ...++++++.
T Consensus 161 ~~~~~~~~~~I~~t~~~~~~~--~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~---------~~~~~~~~~~ 229 (387)
T 2v1u_A 161 ELGDRVWVSLVGITNSLGFVE--NLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFN---------PGVLDPDVVP 229 (387)
T ss_dssp CC-----CEEEEECSCSTTSS--SSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBC---------TTTBCSSHHH
T ss_pred hcCCCceEEEEEEECCCchHh--hhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhcc---------CCCCCHHHHH
Confidence 55677888776554311 127888999975 8999999999999999998864210 1244566677
Q ss_pred HHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 418 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
.++...+ ...|+.|.+.++++.|...+.. +....|+.+|+.++++.+.
T Consensus 230 ~l~~~~~----~~~G~~r~~~~~l~~a~~~a~~---------~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 230 LCAALAA----REHGDARRALDLLRVAGEIAER---------RREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHHHH----SSSCCHHHHHHHHHHHHHHHHH---------TTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHHH----HhccCHHHHHHHHHHHHHHHHH---------cCCCCcCHHHHHHHHHHHh
Confidence 7766553 2248889999999988765421 1224689999998888764
No 168
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.73 E-value=2.6e-17 Score=158.94 Aligned_cols=186 Identities=18% Similarity=0.145 Sum_probs=129.1
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.+..++. ....+..+|++||||||||++|+++|+.++. ++++++
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~---------------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-------~~~~i~ 80 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITS---------------KGKIPHIILHSPSPGTGKTTVAKALCHDVNA-------DMMFVN 80 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHH---------------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-------EEEEEE
T ss_pred CCHHHHhCcHHHHHHHHHHHH---------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-------CEEEEc
Confidence 357889999999998888743 1124455788899999999999999998865 788888
Q ss_pred cccccccccccchhhHHHHHH---hc-----CCcEEEEecccccc-cCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEe
Q 011578 283 RTDLVGEFVGHTGPKTRRRIK---EA-----EGGILFVDEAYRLI-PMQKADDKDYGIEALEEIMSVMDG--GKVVVIFA 351 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~---~a-----~~~vl~iDE~d~l~-~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~ 351 (482)
+++.. ...+++.+. .. ..+||||||+|.+. . ...+.|+..++. ..+++|++
T Consensus 81 ~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~-----------~~~~~L~~~le~~~~~~~iI~~ 142 (324)
T 3u61_B 81 GSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLA-----------ESQRHLRSFMEAYSSNCSIIIT 142 (324)
T ss_dssp TTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGH-----------HHHHHHHHHHHHHGGGCEEEEE
T ss_pred ccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcH-----------HHHHHHHHHHHhCCCCcEEEEE
Confidence 76632 122333222 11 45899999999997 4 334667776664 34555555
Q ss_pred cCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccH-HHHHHHHHHHhhHhhcc
Q 011578 352 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSM-DAIAALIEKETTEKQRR 430 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~ 430 (482)
++... . .++++++|| .+++|++|+.+++.+|++.++..........+ ..+++ +++..++...
T Consensus 143 ~n~~~--~---l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~----~~~~~~~~~~~l~~~~------- 205 (324)
T 3u61_B 143 ANNID--G---IIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEG----IAIADMKVVAALVKKN------- 205 (324)
T ss_dssp ESSGG--G---SCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHT----CCBSCHHHHHHHHHHT-------
T ss_pred eCCcc--c---cCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC----CCCCcHHHHHHHHHhC-------
Confidence 44332 2 389999999 68999999999988887766554321111112 34555 7888887763
Q ss_pred ccCcchhHHHHHHHH
Q 011578 431 EMNGGLVDPMLVNAR 445 (482)
Q Consensus 431 ~~~~~~l~~~~~~a~ 445 (482)
.||.|.+.+.++.+.
T Consensus 206 ~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 206 FPDFRKTIGELDSYS 220 (324)
T ss_dssp CSCTTHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHh
Confidence 688899999988886
No 169
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.72 E-value=1e-17 Score=162.34 Aligned_cols=231 Identities=13% Similarity=0.075 Sum_probs=140.6
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..+++++|++.+++.+...+. ...+++|+||||||||++|+++|+.++. +++.++
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~------------------~~~~vll~G~pGtGKT~la~~la~~~~~-------~~~~i~ 78 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGIC------------------TGGHILLEGVPGLAKTLSVNTLAKTMDL-------DFHRIQ 78 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHH------------------HTCCEEEESCCCHHHHHHHHHHHHHTTC-------CEEEEE
T ss_pred HhccceeCcHHHHHHHHHHHH------------------cCCeEEEECCCCCcHHHHHHHHHHHhCC-------CeEEEe
Confidence 445679999999887776521 1258999999999999999999998754 666666
Q ss_pred ccc--ccccccccchhh-HHHHHHhc----CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-----------
Q 011578 283 RTD--LVGEFVGHTGPK-TRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----------- 344 (482)
Q Consensus 283 ~~~--~~~~~~g~~~~~-~~~~~~~a----~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~----------- 344 (482)
+.. ....++|..... ....+... ..+||||||++.+.+ .+.+.|++.|+++
T Consensus 79 ~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~-----------~~~~~Ll~~l~~~~~~~~g~~~~~ 147 (331)
T 2r44_A 79 FTPDLLPSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPA-----------KVQSALLECMQEKQVTIGDTTYPL 147 (331)
T ss_dssp CCTTCCHHHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTEEEEC
T ss_pred cCCCCChhhcCCceeecCCCCceEeccCcccccEEEEEccccCCH-----------HHHHHHHHHHhcCceeeCCEEEEC
Confidence 531 111122211000 00001111 137999999999876 3447778777643
Q ss_pred --cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhcccccccc-----------ccccccCcc
Q 011578 345 --KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLL-----------YGFKLHSSC 411 (482)
Q Consensus 345 --~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~-----------~~~~~~~~~ 411 (482)
.+++++++++.........++++++||+..+.+++|+.+++.+|++..+......... ........+
T Consensus 148 ~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 227 (331)
T 2r44_A 148 DNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTI 227 (331)
T ss_dssp CSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBC
T ss_pred CCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCC
Confidence 3566666554331111113789999998889999999999999999987653210000 000012345
Q ss_pred cHHHHHHHHHHHhhHh-------------hccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 412 SMDAIAALIEKETTEK-------------QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 412 ~~~~l~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
+++.+..++....... .....+.|.+.++++.|...+..+ ....|+.+|+.+++..+.
T Consensus 228 ~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~---------g~~~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 228 SESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFN---------NRDYVLPEDIKEVAYDIL 298 (331)
T ss_dssp CHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHT---------TCSBCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHHh
Confidence 6666766665432111 111235677777777766554221 223578888888877654
No 170
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.72 E-value=4.2e-17 Score=161.35 Aligned_cols=225 Identities=13% Similarity=0.110 Sum_probs=152.1
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc---CCCC-CCCeEEe
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILP-TDRVTEV 281 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~---~~~~-~~~~~~~ 281 (482)
++++|.+...+.+..++.... ....+.+++|+||||||||++|+++++.+... .... ..+++.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~------------~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i 87 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV------------KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYV 87 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH------------TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHH------------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEE
Confidence 679999999998887754432 12356689999999999999999999988542 0011 3367888
Q ss_pred eccccc-----------ccc-------cccchhh-HHHHHHhc--CCcEEEEecccccccCC-CCCCChhHHHH-HHHHH
Q 011578 282 QRTDLV-----------GEF-------VGHTGPK-TRRRIKEA--EGGILFVDEAYRLIPMQ-KADDKDYGIEA-LEEIM 338 (482)
Q Consensus 282 ~~~~~~-----------~~~-------~g~~~~~-~~~~~~~a--~~~vl~iDE~d~l~~~~-~~~~~~~~~~~-~~~ll 338 (482)
++.... ..+ .|.+... +..++... .+.||||||+|.+.... + .+ +..|+
T Consensus 88 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~--------~~~l~~l~ 159 (384)
T 2qby_B 88 NCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGG--------DIVLYQLL 159 (384)
T ss_dssp EHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTS--------HHHHHHHH
T ss_pred ECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCC--------ceeHHHHh
Confidence 765432 111 1222222 33333322 22499999999997653 3 44 56666
Q ss_pred hhhcCCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHH
Q 011578 339 SVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAA 418 (482)
Q Consensus 339 ~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 418 (482)
... ..+.+|++++..+... ..++++.+||...+.|++|+.+++.+|++.++.+. +. ...++++++..
T Consensus 160 ~~~--~~~~iI~~t~~~~~~~--~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~--------~~-~~~~~~~~~~~ 226 (384)
T 2qby_B 160 RSD--ANISVIMISNDINVRD--YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYG--------LI-KGTYDDEILSY 226 (384)
T ss_dssp TSS--SCEEEEEECSSTTTTT--TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHT--------SC-TTSCCSHHHHH
T ss_pred cCC--cceEEEEEECCCchHh--hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhh--------cc-cCCcCHHHHHH
Confidence 665 6777777776543211 12788888997899999999999999999988631 10 12456677777
Q ss_pred HHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 419 LIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
++.... ..+||.|.+.++++.|...+. ....|+.+|+.++++++.
T Consensus 227 i~~~~~----~~~G~~r~a~~~l~~a~~~a~-----------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 227 IAAISA----KEHGDARKAVNLLFRAAQLAS-----------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHH----TTCCCHHHHHHHHHHHHHHTT-----------SSSCCCHHHHHHHHHHHH
T ss_pred HHHHHH----hccCCHHHHHHHHHHHHHHhc-----------CCCccCHHHHHHHHHHHh
Confidence 776553 235888888999999877652 224688899988887764
No 171
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.72 E-value=3.4e-16 Score=144.23 Aligned_cols=202 Identities=17% Similarity=0.184 Sum_probs=138.4
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC-------
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------- 276 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~------- 276 (482)
.+++++|.+..++.+..++.. ...+..++|+||||||||++++.+++.+.........
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~---------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSL---------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 85 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHH---------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHH
T ss_pred cHHHHhCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 456799999999888876431 1234578999999999999999999988643221111
Q ss_pred ----------CeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHh
Q 011578 277 ----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 339 (482)
Q Consensus 277 ----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~ 339 (482)
.++.+.... ......++++++.. .+.||||||+|.+.+ ..++.|+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-----------~~~~~l~~ 148 (250)
T 1njg_A 86 CREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLK 148 (250)
T ss_dssp HHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------HHHHHHHH
T ss_pred HHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-----------HHHHHHHH
Confidence 112222111 01123345555543 348999999999865 44577777
Q ss_pred hhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHH
Q 011578 340 VMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 417 (482)
Q Consensus 340 ~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 417 (482)
.++. ..+++|++++.... ..+++.+|+ ..++|++|+.+++.++++.++.+.. ..++++.+.
T Consensus 149 ~l~~~~~~~~~i~~t~~~~~-----~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~-----------~~~~~~~~~ 211 (250)
T 1njg_A 149 TLEEPPEHVKFLLATTDPQK-----LPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEH-----------IAHEPRALQ 211 (250)
T ss_dssp HHHSCCTTEEEEEEESCGGG-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTT-----------CCBCHHHHH
T ss_pred HHhcCCCceEEEEEeCChHh-----CCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcC-----------CCCCHHHHH
Confidence 7765 45666666544331 267788887 8999999999999999999887532 345778888
Q ss_pred HHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHH
Q 011578 418 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 474 (482)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al 474 (482)
.+.... .|+.+.+.++++.|.... ...||.+|+.+++
T Consensus 212 ~l~~~~-------~G~~~~~~~~~~~~~~~~-------------~~~i~~~~v~~~~ 248 (250)
T 1njg_A 212 LLARAA-------EGSLRDALSLTDQAIASG-------------DGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHH-------TTCHHHHHHHHHHHHTTT-------------TSSBCHHHHHHHS
T ss_pred HHHHHc-------CCCHHHHHHHHHHHHhcc-------------CceecHHHHHHHh
Confidence 887765 678899999988874321 1269999998875
No 172
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.72 E-value=3.2e-17 Score=151.13 Aligned_cols=186 Identities=10% Similarity=0.007 Sum_probs=126.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHH-hcCCcEEEEeccccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-EAEGGILFVDEAYRLIP 320 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~a~~~vl~iDE~d~l~~ 320 (482)
...+++|+||||||||++|+++++.+...+ ..++.+++.++...+. +.+. .....||||||++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~~~~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELE----RRSFYIPLGIHASIST--------ALLEGLEQFDLICIDDVDAVAG 118 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTT----CCEEEEEGGGGGGSCG--------GGGTTGGGSSEEEEETGGGGTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEEHHHHHHHHH--------HHHHhccCCCEEEEeccccccC
Confidence 457899999999999999999999998643 3667777766544321 1111 13468999999999876
Q ss_pred CCCCCCChhHHHHHHHHHhh-hcCCcE-EEEEecCchhHHHHHhcCccccCCCc--ceeeCCCCCHHHHHHHHHHHHhcc
Q 011578 321 MQKADDKDYGIEALEEIMSV-MDGGKV-VVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQ 396 (482)
Q Consensus 321 ~~~~~~~~~~~~~~~~ll~~-l~~~~~-~vi~~~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~ 396 (482)
... ....+..++.. .+.+.+ +|+.++..... .....+.+.+||. ..++|++|+.+++.++++.++...
T Consensus 119 ~~~------~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~ 190 (242)
T 3bos_A 119 HPL------WEEAIFDLYNRVAEQKRGSLIVSASASPME--AGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMR 190 (242)
T ss_dssp CHH------HHHHHHHHHHHHHHHCSCEEEEEESSCTTT--TTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHT
T ss_pred CHH------HHHHHHHHHHHHHHcCCCeEEEEcCCCHHH--HHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHc
Confidence 431 11222222222 233554 44444332211 1112477888886 899999999999999999988753
Q ss_pred ccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 397 TEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
. ..++++++..+.... .+|.|.+.++++.+...+. .+...||.+|+.++++
T Consensus 191 ~-----------~~~~~~~~~~l~~~~-------~g~~r~l~~~l~~~~~~a~----------~~~~~It~~~v~~~l~ 241 (242)
T 3bos_A 191 G-----------LQLPEDVGRFLLNRM-------ARDLRTLFDVLDRLDKASM----------VHQRKLTIPFVKEMLR 241 (242)
T ss_dssp T-----------CCCCHHHHHHHHHHT-------TTCHHHHHHHHHHHHHHHH----------HHTCCCCHHHHHHHHT
T ss_pred C-----------CCCCHHHHHHHHHHc-------cCCHHHHHHHHHHHHHHHH----------HhCCCCcHHHHHHHhh
Confidence 2 356778888887753 6899999999998877641 1224699999998874
No 173
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.71 E-value=6e-18 Score=150.18 Aligned_cols=167 Identities=20% Similarity=0.277 Sum_probs=116.5
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCC---CCCCeE
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRVT 279 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~---~~~~~~ 279 (482)
..+++++|.+...+.+.+.+. ...+.+++|+||||||||++|+++++.+...... ...+++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQ----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 82 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred ccccccccchHHHHHHHHHHh----------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEE
Confidence 346788999988777776521 1345789999999999999999999998652211 134667
Q ss_pred Eeeccccc--ccccccchhhHHHHHHh----cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecC
Q 011578 280 EVQRTDLV--GEFVGHTGPKTRRRIKE----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 353 (482)
Q Consensus 280 ~~~~~~~~--~~~~g~~~~~~~~~~~~----a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~ 353 (482)
.+++..+. ..+.|.....+.+++.. ..+.||||||+|.+.+.+...... .+.+.|...++.+.+.+|++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~---~~~~~l~~~~~~~~~~~i~~~~ 159 (195)
T 1jbk_A 83 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLKPALARGELHCVGATT 159 (195)
T ss_dssp EECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CC---CCHHHHHHHHHTTSCCEEEEEC
T ss_pred EeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchH---HHHHHHHHhhccCCeEEEEeCC
Confidence 77766554 34455555566666653 234699999999998654321111 2335555666778888888887
Q ss_pred chhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHH
Q 011578 354 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKIL 389 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il 389 (482)
..........++++.+||. .+.|++|+.+++.+|+
T Consensus 160 ~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 7766655566899999996 7999999999998875
No 174
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.71 E-value=9e-17 Score=174.32 Aligned_cols=217 Identities=19% Similarity=0.198 Sum_probs=136.0
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcC---CCCCCCeE
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVT 279 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~---~~~~~~~~ 279 (482)
..++.++|.+...+++.+++. .....+++|+||||||||++|+++|+.+.... .....+++
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~----------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 230 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILL----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV 230 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHH----------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEE
T ss_pred CCCcccCCcHHHHHHHHHHHh----------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEE
Confidence 356789999987777776531 13456899999999999999999999985421 12245788
Q ss_pred Eeeccccc--ccccccchhhHHHHHHhc----CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecC
Q 011578 280 EVQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 353 (482)
Q Consensus 280 ~~~~~~~~--~~~~g~~~~~~~~~~~~a----~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~ 353 (482)
.++.+.+. ..+.|+.+..+..+|..+ .++||||||+|.+.+..... ....+.+.|...++.+.+.+|++|+
T Consensus 231 ~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~---g~~~~~~~L~~~l~~~~i~~I~at~ 307 (854)
T 1qvr_A 231 SLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE---GAVDAGNMLKPALARGELRLIGATT 307 (854)
T ss_dssp EECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHHTTCCCEEEEEC
T ss_pred EeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc---chHHHHHHHHHHHhCCCeEEEEecC
Confidence 88888776 568888888888888765 34799999999998654321 2235567778888889999999988
Q ss_pred chhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccC
Q 011578 354 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 433 (482)
Q Consensus 354 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 433 (482)
...... +..+|++.+||+ .+.|++|+.+++.+|++.++..... .....++++++..++....+.- ....-
T Consensus 308 ~~~~~~-~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~-------~~~~~i~~~al~~~~~ls~r~i-~~~~l 377 (854)
T 1qvr_A 308 LDEYRE-IEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEV-------HHGVRISDSAIIAAATLSHRYI-TERRL 377 (854)
T ss_dssp HHHHHH-HTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHH-------HTTCEECHHHHHHHHHHHHHHC-CSSCT
T ss_pred chHHhh-hccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhh-------hcCCCCCHHHHHHHHHHHhhhc-ccccC
Confidence 877655 566999999996 5999999999999999987765421 1224556677776665443211 11111
Q ss_pred cchhHHHHHHHHHHh
Q 011578 434 GGLVDPMLVNARENL 448 (482)
Q Consensus 434 ~~~l~~~~~~a~~~~ 448 (482)
......++++|....
T Consensus 378 p~kai~lldea~a~~ 392 (854)
T 1qvr_A 378 PDKAIDLIDEAAARL 392 (854)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 234455566665544
No 175
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.71 E-value=1.9e-16 Score=152.45 Aligned_cols=188 Identities=26% Similarity=0.277 Sum_probs=131.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|++..++.+..++. .....+++|+||||||||++|+++++.+.... ...+++.+++
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~--~~~~~~~~~~ 76 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVE----------------RKNIPHLLFSGPPGTGKTATAIALARDLFGEN--WRDNFIEMNA 76 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTT----------------TTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC--HHHHCEEEET
T ss_pred CHHHHhCCHHHHHHHHHHHh----------------CCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc--ccCCeEEEeC
Confidence 46789999999988887521 12344699999999999999999999874211 1125677777
Q ss_pred ccccccccccchhhHHHHHH-----hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchh
Q 011578 284 TDLVGEFVGHTGPKTRRRIK-----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP 356 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~-----~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~ 356 (482)
++..+. ......+..... ...+.||||||+|.+.+ ...+.|+..++. ..+++|++++...
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 77 SDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp TSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-----------HHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred ccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-----------HHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 654321 111112222221 13468999999999976 344778888876 4566666554332
Q ss_pred HHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcch
Q 011578 357 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL 436 (482)
Q Consensus 357 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 436 (482)
. ..|++.+|+ ..++|++|+.+++.++++..+.+.. ..++++++..++... .||.|.
T Consensus 144 --~---l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~-----------~~i~~~~l~~l~~~~-------~G~~r~ 199 (319)
T 2chq_A 144 --R---IIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEKEG-----------VKITEDGLEALIYIS-------GGDFRK 199 (319)
T ss_dssp --G---SCHHHHTTC-EEEECCCCCHHHHHHHHHHHHHTTC-----------CCBCHHHHHHHHHTT-------TTCHHH
T ss_pred --h---cchHHHhhC-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc-------CCCHHH
Confidence 1 278899999 5999999999999999999887643 346788888888543 678888
Q ss_pred hHHHHHHHHH
Q 011578 437 VDPMLVNARE 446 (482)
Q Consensus 437 l~~~~~~a~~ 446 (482)
+.+.++.+..
T Consensus 200 ~~~~l~~~~~ 209 (319)
T 2chq_A 200 AINALQGAAA 209 (319)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 176
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.70 E-value=9.9e-17 Score=172.12 Aligned_cols=203 Identities=19% Similarity=0.233 Sum_probs=136.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHc---CCCCCCCeEE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTE 280 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~---~~~~~~~~~~ 280 (482)
.++.++|.+..++++...+. .....++||+||||||||++|+++|+.+... .......++.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~----------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLS----------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHH----------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred CCCCccCchHHHHHHHHHHh----------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 46789999999988887632 1355689999999999999999999998532 1223446666
Q ss_pred eecccccccccccchhhHHHHHHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhH
Q 011578 281 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM 357 (482)
Q Consensus 281 ~~~~~~~~~~~g~~~~~~~~~~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~ 357 (482)
++. ..+|.|+.+..++.+|..+. ++||||| .. ..+.+.|+..|+.+.+++|++|+...+
T Consensus 242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD----~~-----------~~~~~~L~~~l~~~~v~~I~at~~~~~ 303 (758)
T 3pxi_A 242 LDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID----AA-----------IDASNILKPSLARGELQCIGATTLDEY 303 (758)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC----C-------------------CCCTTSSSCEEEEECCTTTT
T ss_pred ecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc----Cc-----------hhHHHHHHHHHhcCCEEEEeCCChHHH
Confidence 665 55688888888888887654 6999999 11 134478999999999999999999887
Q ss_pred HHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchh
Q 011578 358 KRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLV 437 (482)
Q Consensus 358 ~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 437 (482)
...+..+|++++|| ..|.|+.|+.+++.+|++.++..... .....++++++..++....+. ..........
T Consensus 304 ~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~-------~~~~~i~~~al~~~~~~s~~~-i~~~~~p~~a 374 (758)
T 3pxi_A 304 RKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEA-------HHRVSITDDAIEAAVKLSDRY-ISDRFLPDKA 374 (758)
T ss_dssp HHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGG-------GSSCSCCHHHHHHHHHHHHHS-SCCSCTTHHH
T ss_pred HHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHH-------hcCCCCCHHHHHHHHHHhhcc-cccCcCCcHH
Confidence 77667799999999 67999999999999999987665432 223456778877776654321 1111222345
Q ss_pred HHHHHHHHHHhh
Q 011578 438 DPMLVNARENLD 449 (482)
Q Consensus 438 ~~~~~~a~~~~~ 449 (482)
..++..|+....
T Consensus 375 i~ll~~a~~~~~ 386 (758)
T 3pxi_A 375 IDLIDEAGSKVR 386 (758)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566666665543
No 177
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.70 E-value=4.7e-16 Score=150.45 Aligned_cols=207 Identities=17% Similarity=0.219 Sum_probs=136.7
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.+++++|++.+++.+...+..-. .+ ..++.+++|+|||||||||+|+++|+.++. ++...++
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~---~~--------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~-------~~~~~sg 84 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAK---MR--------GEVLDHVLLAGPPGLGKTTLAHIIASELQT-------NIHVTSG 84 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHH---HH--------TCCCCCEEEESSTTSSHHHHHHHHHHHHTC-------CEEEEET
T ss_pred cHHHccCcHHHHHHHHHHHHHHH---hc--------CCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEec
Confidence 56678898888777765533221 11 124578999999999999999999998864 4444443
Q ss_pred ccccccccccchhhHHHHHHh-cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-------------------
Q 011578 284 TDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------------------- 343 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~~-a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~------------------- 343 (482)
+.+. ....+..++.. ....|+||||++.+.+.. .+.|+..++.
T Consensus 85 ~~~~------~~~~l~~~~~~~~~~~v~~iDE~~~l~~~~-----------~e~L~~~~~~~~~~i~~~~~~~~~~i~~~ 147 (334)
T 1in4_A 85 PVLV------KQGDMAAILTSLERGDVLFIDEIHRLNKAV-----------EELLYSAIEDFQIDIMIGKGPSAKSIRID 147 (334)
T ss_dssp TTCC------SHHHHHHHHHHCCTTCEEEEETGGGCCHHH-----------HHHHHHHHHTSCCCC--------------
T ss_pred hHhc------CHHHHHHHHHHccCCCEEEEcchhhcCHHH-----------HHHHHHHHHhcccceeeccCccccccccc
Confidence 3221 12334444444 356899999999987522 2333333322
Q ss_pred -CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHH
Q 011578 344 -GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 422 (482)
Q Consensus 344 -~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (482)
..+.++.+++.... ..+++++||...+.|++|+.+++.+|++...+... ..++++++..++..
T Consensus 148 l~~~~li~at~~~~~-----Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~-----------~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 148 IQPFTLVGATTRSGL-----LSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD-----------VEIEDAAAEMIAKR 211 (334)
T ss_dssp -CCCEEEEEESCGGG-----SCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-----------CCBCHHHHHHHHHT
T ss_pred CCCeEEEEecCCccc-----CCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC-----------CCcCHHHHHHHHHh
Confidence 12455665544322 27889999988899999999999999998776431 35677888888775
Q ss_pred HhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 423 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 423 ~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
. .|+.|.+.++++++...+..+ ....||.+++.++++.+
T Consensus 212 ~-------~G~~R~a~~ll~~~~~~a~~~---------~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 212 S-------RGTPRIAIRLTKRVRDMLTVV---------KADRINTDIVLKTMEVL 250 (334)
T ss_dssp S-------TTCHHHHHHHHHHHHHHHHHH---------TCSSBCHHHHHHHHHHH
T ss_pred c-------CCChHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHh
Confidence 4 577888888888876654221 11346777777776654
No 178
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=1.9e-16 Score=154.77 Aligned_cols=190 Identities=18% Similarity=0.256 Sum_probs=127.9
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.+..++ ......+++|+||||||||++|+++++.+.... .....++.++
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l----------------~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~~~ 96 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTL----------------KSANLPHMLFYGPPGTGKTSTILALTKELYGPD-LMKSRILELN 96 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHT----------------TCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHH-HHTTSEEEEC
T ss_pred CCHHHhhCCHHHHHHHHHHH----------------hcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCc-ccccceEEEc
Confidence 34778999999988887762 122345699999999999999999999986310 0112567777
Q ss_pred cccccccccccchhhHHHHHH---------------hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---C
Q 011578 283 RTDLVGEFVGHTGPKTRRRIK---------------EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---G 344 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~~~---------------~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~ 344 (482)
+++..+. +.....+..... .....||||||+|.+.+..+ +.|+..|+. .
T Consensus 97 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~-----------~~Ll~~le~~~~~ 163 (353)
T 1sxj_D 97 ASDERGI--SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQ-----------SALRRTMETYSGV 163 (353)
T ss_dssp SSSCCCH--HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHH-----------HHHHHHHHHTTTT
T ss_pred cccccch--HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHH-----------HHHHHHHHhcCCC
Confidence 7653211 100011111111 12346999999999987433 667766664 3
Q ss_pred cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHh
Q 011578 345 KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 424 (482)
Q Consensus 345 ~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 424 (482)
..++++++++.. ..|++++|+ ..+.|++|+.+++..+++..+.+.. ..++++++..++...
T Consensus 164 ~~~il~~~~~~~------l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~~~-----------~~i~~~~l~~l~~~~- 224 (353)
T 1sxj_D 164 TRFCLICNYVTR------IIDPLASQC-SKFRFKALDASNAIDRLRFISEQEN-----------VKCDDGVLERILDIS- 224 (353)
T ss_dssp EEEEEEESCGGG------SCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTT-----------CCCCHHHHHHHHHHT-
T ss_pred ceEEEEeCchhh------CcchhhccC-ceEEeCCCCHHHHHHHHHHHHHHhC-----------CCCCHHHHHHHHHHc-
Confidence 344444443332 278889999 4899999999999999998876532 346788888888765
Q ss_pred hHhhccccCcchhHHHHHHHHHH
Q 011578 425 TEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 425 ~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
.|+.|.+.++++.+...
T Consensus 225 ------~G~~r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 225 ------AGDLRRGITLLQSASKG 241 (353)
T ss_dssp ------SSCHHHHHHHHHHTHHH
T ss_pred ------CCCHHHHHHHHHHHHHh
Confidence 47788888888776654
No 179
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.69 E-value=6.7e-17 Score=129.79 Aligned_cols=93 Identities=25% Similarity=0.378 Sum_probs=82.3
Q ss_pred cccCCCCCchHhHHHHHcCCHHHHHHHHhhCCCCccCCCCCCCChHHHHHHhCCcHHHHHHHHcCCCCCCcccccCcCCC
Q 011578 6 DRRSRSAKPATIHGCAQSGDLLAFQRLLRENPSLLNERNPVMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG 85 (482)
Q Consensus 6 ~~~~~~~~~t~l~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g 85 (482)
..+.+..|.|+||+||..|+.+.++.|+.. +.++|..+.. |+||||+||..|+.+++++|++ .+++++.+|..|
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~-g~tpLh~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g 90 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKN-GSTPLHLAARNGHLEVVKLLLE----AGADVXAQDKFG 90 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTS
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCC-CCCHHHHHHHcCCHHHHHHHHH----cCCCccccccCC
Confidence 356678899999999999999999999954 7788888876 9999999999999999999999 578899999999
Q ss_pred ChHHHHHHHcCCHHHHHHH
Q 011578 86 ETPLHMAAKNGCNEAAKLL 104 (482)
Q Consensus 86 ~tpLh~A~~~g~~~~v~~L 104 (482)
+||||+|+..|+.+++++|
T Consensus 91 ~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 91 KTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CCHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHh
Confidence 9999999999999999987
No 180
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.69 E-value=1.9e-16 Score=152.83 Aligned_cols=200 Identities=15% Similarity=0.107 Sum_probs=132.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh--cCCcEEEEecccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLI 319 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--a~~~vl~iDE~d~l~ 319 (482)
.+.+++|+||||||||++|+++++.+... ..+++.+++.++...+.+.........|.. ...+||||||++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~ 111 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR----GYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLS 111 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT----TCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC----CCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCccccc
Confidence 45689999999999999999999998653 347888888777655544332222222221 246899999999987
Q ss_pred cCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCCc--ceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 320 PMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
.++. ....++..+-...+.+..+|++++++.. .+...++++.+||. ..++|++ +.+++.+|++.++.+..
T Consensus 112 ~~~~-----~~~~l~~~l~~~~~~~~~iii~~~~~~~--~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~ 183 (324)
T 1l8q_A 112 GKER-----TQIEFFHIFNTLYLLEKQIILASDRHPQ--KLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFN 183 (324)
T ss_dssp TCHH-----HHHHHHHHHHHHHHTTCEEEEEESSCGG--GCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTT
T ss_pred CChH-----HHHHHHHHHHHHHHCCCeEEEEecCChH--HHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcC
Confidence 5321 1112333333334556666666643322 11123788999995 6899999 99999999999987532
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcc-cHHHHHHHHHH
Q 011578 398 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTI-TLEDLEAGLKL 476 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i-~~~d~~~al~~ 476 (482)
..++++++..++.. . +|.|.+.++++.+.... ..... ......| |.+++.++++.
T Consensus 184 -----------~~l~~~~l~~l~~~-------~-g~~r~l~~~l~~~~~~~-~~~l~----~~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 184 -----------LELRKEVIDYLLEN-------T-KNVREIEGKIKLIKLKG-FEGLE----RKERKERDKLMQIVEFVAN 239 (324)
T ss_dssp -----------CCCCHHHHHHHHHH-------C-SSHHHHHHHHHHHHHHC-HHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHh-------C-CCHHHHHHHHHHHHHcC-HHHhc----cccccCCCCHHHHHHHHHH
Confidence 35677888877764 2 78899999999887761 00000 1234568 88888888776
Q ss_pred H
Q 011578 477 L 477 (482)
Q Consensus 477 ~ 477 (482)
.
T Consensus 240 ~ 240 (324)
T 1l8q_A 240 Y 240 (324)
T ss_dssp H
T ss_pred H
Confidence 4
No 181
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.68 E-value=3.4e-16 Score=154.12 Aligned_cols=218 Identities=17% Similarity=0.161 Sum_probs=152.6
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
..++|.+...+.+.+.+..+ +....+++++|++|||||++|++++... .....+|+.++++.
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~--------------a~~~~~vli~Ge~GtGK~~lAr~ih~~s----~r~~~~fv~v~~~~ 198 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKI--------------SCAECPVLITGESGVGKEVVARLIHKLS----DRSKEPFVALNVAS 198 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHH--------------TTCCSCEEEECSTTSSHHHHHHHHHHHS----TTTTSCEEEEETTT
T ss_pred hhhhhccHHhhHHHHHHHHh--------------cCCCCCeEEecCCCcCHHHHHHHHHHhc----CCCCCCeEEEecCC
Confidence 35677766555555544332 2345678999999999999999999854 34456999999987
Q ss_pred ccc-----cccccch-------hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC---------
Q 011578 286 LVG-----EFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------- 344 (482)
Q Consensus 286 ~~~-----~~~g~~~-------~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~--------- 344 (482)
+.. ..+|+.. ......|+.|.+|+||||||+.+.+..| ..|++.++++
T Consensus 199 ~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q-----------~~Ll~~l~~~~~~~~g~~~ 267 (387)
T 1ny5_A 199 IPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQ-----------AKLLRVIESGKFYRLGGRK 267 (387)
T ss_dssp SCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHH-----------HHHHHHHHHSEECCBTCCS
T ss_pred CCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHH-----------HHHHHHHhcCcEEeCCCCc
Confidence 533 2444321 1234578899999999999999988444 7788887653
Q ss_pred ----cEEEEEecCchhHHHHHhc--CccccCCC-cceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccHHH
Q 011578 345 ----KVVVIFAGYSEPMKRVIAS--NEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 415 (482)
Q Consensus 345 ----~~~vi~~~~~~~~~~~~~~--~~~l~~R~-~~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 415 (482)
.+.+|+||+.+....+-.. .+.|..|+ ...|.+|++.. +++..+++.++++.... ++. -...+++++
T Consensus 268 ~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~---~~~-~~~~~~~~a 343 (387)
T 1ny5_A 268 EIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRK---YAK-EVEGFTKSA 343 (387)
T ss_dssp BEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHH---TTC-CCCEECHHH
T ss_pred eeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHH---cCC-CCCCCCHHH
Confidence 3578888776654433111 24444455 45677788764 99999999998876431 111 124689999
Q ss_pred HHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHH
Q 011578 416 IAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 474 (482)
Q Consensus 416 l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al 474 (482)
+..+..+.| +||.|+++|++++|+... +...|+.+|+...+
T Consensus 344 ~~~l~~~~w------pGNvreL~~~i~~~~~~~------------~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 344 QELLLSYPW------YGNVRELKNVIERAVLFS------------EGKFIDRGELSCLV 384 (387)
T ss_dssp HHHHHHSCC------TTHHHHHHHHHHHHHHHC------------CSSEECHHHHHHHC
T ss_pred HHHHHhCCC------CcHHHHHHHHHHHHHHhC------------CCCcCcHHHCcHhh
Confidence 999999998 999999999999998764 11357778876543
No 182
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.68 E-value=3.8e-17 Score=163.60 Aligned_cols=198 Identities=15% Similarity=0.175 Sum_probs=130.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh--c-CCcEEEEecccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--A-EGGILFVDEAYRLI 319 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--a-~~~vl~iDE~d~l~ 319 (482)
+.+++|+||||||||++|+++++.+.... ...+++.+++..+...+++.........|.. . ...||||||++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~ 207 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE--PDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLI 207 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC--CSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC--CCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCccccc
Confidence 56899999999999999999999886431 1336788888776555443322221222322 2 56899999999998
Q ss_pred cCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCCc--ceeeCCCCCHHHHHHHHHHHHhccc
Q 011578 320 PMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT 397 (482)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~--~~i~~~~~~~~~~~~il~~~l~~~~ 397 (482)
.+.. ....++..|-...+.+..+|++++.+.. .+...++++++||. .++.+++|+.+++.+|++..+...
T Consensus 208 ~~~~-----~q~~l~~~l~~l~~~~~~iIitt~~~~~--~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~- 279 (440)
T 2z4s_A 208 GKTG-----VQTELFHTFNELHDSGKQIVICSDREPQ--KLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIE- 279 (440)
T ss_dssp SCHH-----HHHHHHHHHHHHHTTTCEEEEEESSCGG--GCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHH-
T ss_pred CChH-----HHHHHHHHHHHHHHCCCeEEEEECCCHH--HHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHc-
Confidence 6311 1122333333334556666666543222 11123788899995 789999999999999999988653
Q ss_pred cccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 398 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
+ ..++++++..++... .+|.|.+.++++.+...+... ...||.+++.++++.+
T Consensus 280 ------~----~~i~~e~l~~la~~~-------~gn~R~l~~~L~~~~~~a~~~----------~~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 280 ------H----GELPEEVLNFVAENV-------DDNLRRLRGAIIKLLVYKETT----------GKEVDLKEAILLLKDF 332 (440)
T ss_dssp ------T----CCCCTTHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHS----------SSCCCHHHHHHHTSTT
T ss_pred ------C----CCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHh----------CCCCCHHHHHHHHHHH
Confidence 2 234556777777543 689999999999988765211 1236677776666543
No 183
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=5.8e-16 Score=149.55 Aligned_cols=188 Identities=25% Similarity=0.312 Sum_probs=128.1
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.|++++|++.+++.+..++.. ....+++|+||||||||++|+++++.+.... ....++.+++
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~----------------~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~--~~~~~~~~~~ 84 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKT----------------GSMPHLLFAGPPGVGKTTAALALARELFGEN--WRHNFLELNA 84 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHH----------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGG--HHHHEEEEET
T ss_pred CHHHhhCCHHHHHHHHHHHHc----------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCc--ccCceEEeec
Confidence 467899999999988876431 1344699999999999999999999875321 0124677776
Q ss_pred ccccccccccchhhHHHHHH-----hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchh
Q 011578 284 TDLVGEFVGHTGPKTRRRIK-----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP 356 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~-----~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~ 356 (482)
++..+. ......+.+... ...++||||||+|.+.+ ...+.|+..++. ..+++|++++...
T Consensus 85 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 85 SDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-----------DAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp TCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH-----------HHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 543221 000111222111 14568999999999976 334677777764 3455555543322
Q ss_pred HHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcch
Q 011578 357 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL 436 (482)
Q Consensus 357 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 436 (482)
. ..+++.+|+. .+.|++|+.+++..+++..+.+.. ..++++++..++... .||.|.
T Consensus 152 ~-----l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~l~~~~-------~g~~r~ 207 (327)
T 1iqp_A 152 K-----IIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEG-----------LELTEEGLQAILYIA-------EGDMRR 207 (327)
T ss_dssp G-----SCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTT-----------CEECHHHHHHHHHHH-------TTCHHH
T ss_pred c-----cCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHHHC-------CCCHHH
Confidence 1 2678888984 899999999999999998887542 246778888888754 678888
Q ss_pred hHHHHHHHHH
Q 011578 437 VDPMLVNARE 446 (482)
Q Consensus 437 l~~~~~~a~~ 446 (482)
+.++++.+..
T Consensus 208 ~~~~l~~~~~ 217 (327)
T 1iqp_A 208 AINILQAAAA 217 (327)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 8888877653
No 184
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=2.3e-15 Score=145.05 Aligned_cols=184 Identities=24% Similarity=0.258 Sum_probs=126.2
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.+++++|++..++.+..++. .....+++|+||||+|||++|+++++.+..... ...++.+++
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~--~~~~~~~~~ 80 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAK----------------DGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY--ADGVLELNA 80 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHH----------------SCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH--HHHEEEECT
T ss_pred CHHHHHCCHHHHHHHHHHHH----------------cCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc--cCCEEEecC
Confidence 46789999999998887632 123345999999999999999999998742110 114667766
Q ss_pred ccccccccccchhhHHHHHH----------hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEe
Q 011578 284 TDLVGEFVGHTGPKTRRRIK----------EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFA 351 (482)
Q Consensus 284 ~~~~~~~~g~~~~~~~~~~~----------~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~ 351 (482)
++..+ ...+++.++ ..+..||+|||+|.+... ..+.|+..++. ...++|++
T Consensus 81 ~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~~~~~~~~il~ 143 (323)
T 1sxj_B 81 SDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-----------AQQALRRTMELYSNSTRFAFA 143 (323)
T ss_dssp TSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-----------HHHTTHHHHHHTTTTEEEEEE
T ss_pred ccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-----------HHHHHHHHHhccCCCceEEEE
Confidence 54321 122333322 123589999999999762 34666666664 34555555
Q ss_pred cCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccc
Q 011578 352 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 431 (482)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 431 (482)
++... . ..|++.+|+ ..+.|++|+.+++.++++..+.+.. ..++++++..++... .
T Consensus 144 ~~~~~--~---l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~l~~~~-------~ 199 (323)
T 1sxj_B 144 CNQSN--K---IIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLED-----------VKYTNDGLEAIIFTA-------E 199 (323)
T ss_dssp ESCGG--G---SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHHHHHHHH-------T
T ss_pred eCChh--h---chhHHHhhc-eEEeecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc-------C
Confidence 43322 1 278889998 5999999999999999998886532 245778888887765 5
Q ss_pred cCcchhHHHHHHHHH
Q 011578 432 MNGGLVDPMLVNARE 446 (482)
Q Consensus 432 ~~~~~l~~~~~~a~~ 446 (482)
|+.+.+.+.++.+..
T Consensus 200 G~~r~a~~~l~~~~~ 214 (323)
T 1sxj_B 200 GDMRQAINNLQSTVA 214 (323)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 777888888877653
No 185
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.65 E-value=8.1e-16 Score=152.00 Aligned_cols=228 Identities=13% Similarity=0.112 Sum_probs=147.0
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
++++|.+...+.+.+++... .....+..++++||||||||++++.+++.+...... ..+++.+++..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~------------~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-~~~~~~i~~~~ 86 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPL------------YREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-KFKHVYINTRQ 86 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGG------------GGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-SCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHH------------HcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-CceEEEEECCC
Confidence 56899998888888763322 112356789999999999999999999988542110 22567777543
Q ss_pred ccc------c----------ccccchhh-HH---HHHHhcC-CcEEEEecccccccCC-CCCCChhHHHHHHHHHhhh--
Q 011578 286 LVG------E----------FVGHTGPK-TR---RRIKEAE-GGILFVDEAYRLIPMQ-KADDKDYGIEALEEIMSVM-- 341 (482)
Q Consensus 286 ~~~------~----------~~g~~~~~-~~---~~~~~a~-~~vl~iDE~d~l~~~~-~~~~~~~~~~~~~~ll~~l-- 341 (482)
... . ..|.+... .. +.+.... +.||||||++.+.... + .++..|+..+
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~--------~~l~~l~~~~~~ 158 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND--------DILYKLSRINSE 158 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS--------THHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC--------HHHHHHhhchhh
Confidence 211 1 01211222 22 2233222 5799999999997643 2 4556676666
Q ss_pred -cCCcEEEEEecCchhHHHHHhcCccccCCCc-ceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHH
Q 011578 342 -DGGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL 419 (482)
Q Consensus 342 -~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (482)
....+.+|++++..+... ..++.+.+||. ..+.|++|+.+++.++++..+.+.. . ...++.+++..+
T Consensus 159 ~~~~~~~~I~~~~~~~~~~--~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~--------~-~~~~~~~~~~~l 227 (386)
T 2qby_A 159 VNKSKISFIGITNDVKFVD--LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF--------K-PGVLPDNVIKLC 227 (386)
T ss_dssp CCC--EEEEEEESCGGGGG--GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB--------C-SSCSCHHHHHHH
T ss_pred cCCCeEEEEEEECCCChHh--hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc--------c-CCCCCHHHHHHH
Confidence 456777888776554321 12677888885 4899999999999999998876421 0 235677777777
Q ss_pred HHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHHH
Q 011578 420 IEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 478 (482)
Q Consensus 420 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~~ 478 (482)
..... ...|+.+.+.++++.+...+.. +....|+.+|+..|++.+.
T Consensus 228 ~~~~~----~~~G~~r~~~~ll~~a~~~a~~---------~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 228 AALAA----REHGDARRALDLLRVSGEIAER---------MKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHH----HTTCCHHHHHHHHHHHHHHHHH---------TTCSSCCHHHHHHHHHHHH
T ss_pred HHHHH----HhcCCHHHHHHHHHHHHHHHHh---------cCCCccCHHHHHHHHHHHh
Confidence 76553 1137888888888888665421 1224688888888887664
No 186
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.65 E-value=4.9e-15 Score=145.82 Aligned_cols=188 Identities=17% Similarity=0.195 Sum_probs=129.3
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCC-------
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------- 276 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~------- 276 (482)
.|++++|++...+.+...+.. ...+..++|+||||||||++|+++++.+.........
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~---------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSL---------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHH---------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred chhhccCcHHHHHHHHHHHHh---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 467899999999888876421 1233468999999999999999999988542211111
Q ss_pred ----------CeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecccccccCCCCCCChhHHHHHHHHHh
Q 011578 277 ----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 339 (482)
Q Consensus 277 ----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~ 339 (482)
.++.+++..- .....++++++.. .+.||||||+|.+.. ...+.|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~Ll~ 141 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLK 141 (373)
T ss_dssp HHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------HHHHHHHH
T ss_pred HHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-----------HHHHHHHH
Confidence 1233332210 1122345555543 247999999999975 34577888
Q ss_pred hhcC--CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHH
Q 011578 340 VMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 417 (482)
Q Consensus 340 ~l~~--~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 417 (482)
.++. ..+++|++++.... ..+.+.+|+ ..++|++|+.+++.++++.++++.. ..++.+++.
T Consensus 142 ~le~~~~~~~~Il~~~~~~~-----l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~-----------~~~~~~a~~ 204 (373)
T 1jr3_A 142 TLEEPPEHVKFLLATTDPQK-----LPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEH-----------IAHEPRALQ 204 (373)
T ss_dssp HHHSCCSSEEEEEEESCGGG-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHH
T ss_pred HHhcCCCceEEEEEeCChHh-----CcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHH
Confidence 8875 45666666543321 267788898 8999999999999999999887542 245778887
Q ss_pred HHHHHHhhHhhccccCcchhHHHHHHHHHH
Q 011578 418 ALIEKETTEKQRREMNGGLVDPMLVNAREN 447 (482)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 447 (482)
.++... .|+.+.+.++++.+...
T Consensus 205 ~l~~~~-------~G~~r~~~~~l~~~~~~ 227 (373)
T 1jr3_A 205 LLARAA-------EGSLRDALSLTDQAIAS 227 (373)
T ss_dssp HHHHHS-------SSCHHHHHHHHHHHHHH
T ss_pred HHHHHC-------CCCHHHHHHHHHHHHHh
Confidence 777654 67888999998887643
No 187
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.64 E-value=2.1e-16 Score=163.61 Aligned_cols=245 Identities=17% Similarity=0.147 Sum_probs=142.5
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
..++|++.+|+.+...+..- ..+.... .......++||+||||||||++|+++|+.+........ ...++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g----~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~---~~~~~~~ 366 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG----VPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTG---KGSTAAG 366 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC----CCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCT---TCSTTTT
T ss_pred chhcChHHHHHHHHHHHhCC----CcccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCC---Ccccccc
Confidence 35899999887775321000 0000000 01112338999999999999999999987643211100 0012222
Q ss_pred cccccccc----chhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc---------------E
Q 011578 286 LVGEFVGH----TGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------V 346 (482)
Q Consensus 286 ~~~~~~g~----~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---------------~ 346 (482)
+.+..+.. ........+..|.++||||||+|++.+. ..+.|++.|+.+. +
T Consensus 367 l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~-----------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~ 435 (595)
T 3f9v_A 367 LTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE-----------DRVAIHEAMEQQTVSIAKAGIVAKLNARA 435 (595)
T ss_dssp SEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH-----------HHHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred ccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHh-----------HhhhhHHHHhCCEEEEecCCcEEEecCce
Confidence 22221111 0011123456778899999999999874 4488888887644 3
Q ss_pred EEEEecCchh--HH------HHHhcCccccCCCcceee-CCCCCHHHHHHHHHHHHhccccccccccc------------
Q 011578 347 VVIFAGYSEP--MK------RVIASNEGFCRRVTKFFH-FNDFNSEELAKILHIKMNNQTEDSLLYGF------------ 405 (482)
Q Consensus 347 ~vi~~~~~~~--~~------~~~~~~~~l~~R~~~~i~-~~~~~~~~~~~il~~~l~~~~~~~~~~~~------------ 405 (482)
.||+|+++.. ++ .-+..++++++|||..+. .+.|+.+ ...|++..+...........+
T Consensus 436 ~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~a 514 (595)
T 3f9v_A 436 AVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYA 514 (595)
T ss_dssp EEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHH
T ss_pred EEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHH
Confidence 5777766542 00 001348999999986554 5556666 778888777653310000000
Q ss_pred --cccCcccHHHHHHHHHHHhhHhh--------ccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHH
Q 011578 406 --KLHSSCSMDAIAALIEKETTEKQ--------RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 475 (482)
Q Consensus 406 --~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~ 475 (482)
.+.+.+++++...+...+...+. ..+++.|.+.+++..|...+..+.. ..|+.+|+.+|+.
T Consensus 515 r~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~---------~~V~~~dv~~Ai~ 585 (595)
T 3f9v_A 515 RKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALK---------AEVTREDAERAIN 585 (595)
T ss_dssp HHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSS---------CCSSHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCc---------CCCCHHHHHHHHH
Confidence 12345565666666665432110 2367889999999998887644432 4699999999998
Q ss_pred HHHh
Q 011578 476 LLLR 479 (482)
Q Consensus 476 ~~~~ 479 (482)
-+..
T Consensus 586 l~~~ 589 (595)
T 3f9v_A 586 IMRL 589 (595)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 188
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.64 E-value=3.9e-16 Score=131.89 Aligned_cols=138 Identities=16% Similarity=0.158 Sum_probs=94.2
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
+++|.+...+.+.+.+..+ .....+++|+||||||||++|+++++.. .....+|+ ++++.+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~--------------a~~~~~vll~G~~GtGKt~lA~~i~~~~----~~~~~~~v-~~~~~~ 62 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL--------------SETDIAVWLYGAPGTGRMTGARYLHQFG----RNAQGEFV-YRELTP 62 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH--------------TTCCSCEEEESSTTSSHHHHHHHHHHSS----TTTTSCCE-EEECCT
T ss_pred CceeCCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCCHHHHHHHHHHhC----CccCCCEE-EECCCC
Confidence 4678887777777665433 2356789999999999999999999844 23345788 888876
Q ss_pred cccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEecCchhHHHHHh--
Q 011578 287 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIA-- 362 (482)
Q Consensus 287 ~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~~~~~~~~~~~-- 362 (482)
... ......|+.+.+++|||||+|.+.+..| ..|+..|.. ..+.+|++|+.+.......
T Consensus 63 ~~~------~~~~~~~~~a~~g~l~ldei~~l~~~~q-----------~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~ 125 (145)
T 3n70_A 63 DNA------PQLNDFIALAQGGTLVLSHPEHLTREQQ-----------YHLVQLQSQEHRPFRLIGIGDTSLVELAASNH 125 (145)
T ss_dssp TTS------SCHHHHHHHHTTSCEEEECGGGSCHHHH-----------HHHHHHHHSSSCSSCEEEEESSCHHHHHHHSC
T ss_pred Ccc------hhhhcHHHHcCCcEEEEcChHHCCHHHH-----------HHHHHHHhhcCCCEEEEEECCcCHHHHHHcCC
Confidence 544 3456778889999999999999987444 666666654 4567777777655433211
Q ss_pred cCccccCCC-cceeeCCCC
Q 011578 363 SNEGFCRRV-TKFFHFNDF 380 (482)
Q Consensus 363 ~~~~l~~R~-~~~i~~~~~ 380 (482)
-.+.+..|+ ...|.+|++
T Consensus 126 ~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 126 IIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp CCHHHHHHHHHHEEECCCC
T ss_pred CCHHHHHHhcCCEEeCCCC
Confidence 134455565 335777764
No 189
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.63 E-value=1.5e-16 Score=155.44 Aligned_cols=202 Identities=18% Similarity=0.273 Sum_probs=146.4
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
.++|.+.....+.+.+..+ ......++++|++||||+++|++++..... ...|+.++++.+
T Consensus 130 ~~ig~s~~~~~~~~~~~~~--------------a~~~~~vli~GesGtGKe~lAr~ih~~s~r-----~~~fv~vnc~~~ 190 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKI--------------AKSKAPVLITGESGTGKEIVARLIHRYSGR-----KGAFVDLNCASI 190 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHH--------------HTSCSCEEEECCTTSSHHHHHHHHHHHHCC-----CSCEEEEESSSS
T ss_pred cccccchHHHHHHhhhhhh--------------hccchhheEEeCCCchHHHHHHHHHHhccc-----cCCcEEEEcccC
Confidence 4677776666666554333 124567999999999999999999986643 224999999865
Q ss_pred cc-----cccccchh-------hHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC----------
Q 011578 287 VG-----EFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---------- 344 (482)
Q Consensus 287 ~~-----~~~g~~~~-------~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------- 344 (482)
.. ..+|+... .....|+.|.+|+||||||+.+.+..| ..|++.++++
T Consensus 191 ~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q-----------~~Ll~~l~~~~~~~~g~~~~ 259 (368)
T 3dzd_A 191 PQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQ-----------AKLLRVLETGSFTRLGGNQK 259 (368)
T ss_dssp CTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHH-----------HHHHHHHHHSEECCBTCCCB
T ss_pred ChHHHHHHhcCccccccCCcccccCChHhhcCCCeEEecChhhCCHHHH-----------HHHHHHHHhCCcccCCCCcc
Confidence 33 23443211 123468889999999999999988555 8888888764
Q ss_pred ---cEEEEEecCchhHHHHHhc--CccccCCCc-ceeeCCCCCH--HHHHHHHHHHHhccccccccccccccCcccHHHH
Q 011578 345 ---KVVVIFAGYSEPMKRVIAS--NEGFCRRVT-KFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 416 (482)
Q Consensus 345 ---~~~vi~~~~~~~~~~~~~~--~~~l~~R~~-~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l 416 (482)
.+.+|++|+.+....+... .+.|..|+. ..|.+|++.. +++..+++.++++.... ++ .....++++++
T Consensus 260 ~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~---~~-~~~~~~~~~a~ 335 (368)
T 3dzd_A 260 IEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKE---YK-KNCFELSEETK 335 (368)
T ss_dssp EECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHH---TT-CCCCCBCHHHH
T ss_pred eeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHH---cC-CCCCCcCHHHH
Confidence 3568888887765543211 245555763 3588999887 89999999999876532 11 22356899999
Q ss_pred HHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 417 AALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
..+..+.| +||.|+++|++++|+...
T Consensus 336 ~~L~~~~w------pGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 336 EYLMKQEW------KGNVRELKNLIERAVILC 361 (368)
T ss_dssp HHHHTCCC------TTHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCC------CcHHHHHHHHHHHHHHhC
Confidence 99999999 999999999999998653
No 190
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=1.9e-15 Score=147.74 Aligned_cols=190 Identities=17% Similarity=0.197 Sum_probs=122.6
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCC-----------
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI----------- 272 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~----------- 272 (482)
.|++++|++.+.+.+..++. ......+++|+||||+|||++++++++.+.....
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~---------------~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSD---------------QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTT---------------CTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CHHHhcCCHHHHHHHHHHHh---------------hCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 47789999999888876520 1223345999999999999999999997632110
Q ss_pred -----------CCCCCeEEeecccccccccccchhhHHHHHHh-----------------cCCcEEEEecccccccCCCC
Q 011578 273 -----------LPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-----------------AEGGILFVDEAYRLIPMQKA 324 (482)
Q Consensus 273 -----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------------a~~~vl~iDE~d~l~~~~~~ 324 (482)
.....++.++++... ......+++.++. ..+.||+|||++.+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~--- 149 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD--- 149 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH---
T ss_pred ccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHH---
Confidence 001123333322210 0010123333332 13469999999997652
Q ss_pred CCChhHHHHHHHHHhhhcC---CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccc
Q 011578 325 DDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSL 401 (482)
Q Consensus 325 ~~~~~~~~~~~~ll~~l~~---~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~ 401 (482)
..+.|+..|+. +..+|+.++..... .|++++|+ ..++|++|+.+++.++++..+.+..
T Consensus 150 --------~~~~L~~~le~~~~~~~~Il~t~~~~~l------~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~---- 210 (354)
T 1sxj_E 150 --------AQAALRRTMEKYSKNIRLIMVCDSMSPI------IAPIKSQC-LLIRCPAPSDSEISTILSDVVTNER---- 210 (354)
T ss_dssp --------HHHHHHHHHHHSTTTEEEEEEESCSCSS------CHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT----
T ss_pred --------HHHHHHHHHHhhcCCCEEEEEeCCHHHH------HHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcC----
Confidence 23556665543 44444444443332 67889999 8999999999999999999887542
Q ss_pred cccccccCccc-HHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 402 LYGFKLHSSCS-MDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 402 ~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
+ .++ ++++..++... .|+.|.+.+.++.+....
T Consensus 211 ---~----~~~~~~~l~~i~~~~-------~G~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 211 ---I----QLETKDILKRIAQAS-------NGNLRVSLLMLESMALNN 244 (354)
T ss_dssp ---C----EECCSHHHHHHHHHH-------TTCHHHHHHHHTHHHHTT
T ss_pred ---C----CCCcHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhC
Confidence 2 345 67788887655 688899999998887654
No 191
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.62 E-value=1.1e-16 Score=141.20 Aligned_cols=159 Identities=16% Similarity=0.263 Sum_probs=109.2
Q ss_pred HHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCC---CCCCCeEE
Q 011578 204 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTE 280 (482)
Q Consensus 204 ~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~---~~~~~~~~ 280 (482)
.+++++|.+...+.+.+.+. .....+++|+||||||||++|+++++.+..... ....+++.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~----------------~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILS----------------RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred ccchhhcchHHHHHHHHHHh----------------CCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 46788999987777776521 134668999999999999999999998854211 12345666
Q ss_pred eeccccc--ccccccchhhHHHHHHhc----CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 281 VQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 281 ~~~~~~~--~~~~g~~~~~~~~~~~~a----~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
++...+. ..+.|.....+.+++... .+.||||||+|.+.+.+.... ....+.+.|...++.+.+++|++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~--~~~~~~~~l~~~~~~~~~~ii~~~~~ 161 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE--GALDAGNILKPMLARGELRCIGATTV 161 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT--TSCCTHHHHHHHHHTTCSCEEEEECH
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc--cchHHHHHHHHHHhcCCeeEEEecCH
Confidence 6665543 224444445555555432 347999999999986543111 11234566667777888889998887
Q ss_pred hhHHHHHhcCccccCCCcceeeCCCCC
Q 011578 355 EPMKRVIASNEGFCRRVTKFFHFNDFN 381 (482)
Q Consensus 355 ~~~~~~~~~~~~l~~R~~~~i~~~~~~ 381 (482)
.........++++.+||. .+.++.|+
T Consensus 162 ~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 162 SEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp HHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred HHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 776555556899999996 59999886
No 192
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.62 E-value=1.5e-14 Score=143.19 Aligned_cols=226 Identities=17% Similarity=0.200 Sum_probs=144.1
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCC--ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP--HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
++++|.+...+.+..++..... ...+. .++|+||||||||++++++++.+.... ...++.+++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~------------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~i~~ 81 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLR------------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT---TARFVYING 81 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHH------------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC---CCEEEEEET
T ss_pred CCCCChHHHHHHHHHHHHHHHc------------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc---CeeEEEEeC
Confidence 5689999988888877543310 11233 799999999999999999999875421 236777776
Q ss_pred ccccc------c---cc-------ccchhhH----HHHHHhc-CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhc
Q 011578 284 TDLVG------E---FV-------GHTGPKT----RRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 342 (482)
Q Consensus 284 ~~~~~------~---~~-------g~~~~~~----~~~~~~a-~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~ 342 (482)
..... . .+ |.....+ ...+... .+.||||||++.+.+ ..+..|+..++
T Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~-----------~~~~~L~~~~~ 150 (389)
T 1fnn_A 82 FIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAP-----------DILSTFIRLGQ 150 (389)
T ss_dssp TTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCH-----------HHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccch-----------HHHHHHHHHHH
Confidence 54321 0 11 1111122 2222222 347999999999932 45566666665
Q ss_pred C------CcEEEEEecCchhHHHHHhcCccccCCCcc-eeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHH
Q 011578 343 G------GKVVVIFAGYSEPMKRVIASNEGFCRRVTK-FFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 415 (482)
Q Consensus 343 ~------~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~-~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 415 (482)
. ..+.+|++++....... .++.+.+||.. .+.|++++.+++.++++..+..... ...+++++
T Consensus 151 ~~~~~~~~~~~iI~~~~~~~~~~~--l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~---------~~~~~~~~ 219 (389)
T 1fnn_A 151 EADKLGAFRIALVIVGHNDAVLNN--LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA---------EGSYSEDI 219 (389)
T ss_dssp CHHHHSSCCEEEEEEESSTHHHHT--SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC---------TTSSCHHH
T ss_pred hCCCCCcCCEEEEEEECCchHHHH--hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC---------CCCCCHHH
Confidence 3 46677766554433222 36778888854 8999999999999999988764210 13568888
Q ss_pred HHHHHHHHhhHh--hccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHHH
Q 011578 416 IAALIEKETTEK--QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 477 (482)
Q Consensus 416 l~~~~~~~~~~~--~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~~ 477 (482)
+..+....++.. ....|+.|.+.++++.|...+..+ ....|+.+|+..++..+
T Consensus 220 ~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~---------~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 220 LQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQN---------GRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHT---------TCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHh---------CCCCcCHHHHHHHHHHH
Confidence 888888764100 001477788889988887654221 12346666666666554
No 193
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.62 E-value=5.2e-15 Score=154.33 Aligned_cols=148 Identities=14% Similarity=0.202 Sum_probs=100.0
Q ss_pred HHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-----------------------cEEEEEecCchh
Q 011578 300 RRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSEP 356 (482)
Q Consensus 300 ~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-----------------------~~~vi~~~~~~~ 356 (482)
..+..+.+++|||||++.+.+ .+.+.|++.|+.+ ++.||++|+++.
T Consensus 195 g~~~~a~~gvL~LDEi~~l~~-----------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~ 263 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIATLSL-----------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDT 263 (604)
T ss_dssp CHHHHTTTSEEEETTGGGSCH-----------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHH
T ss_pred ceeeecCCCEEEEechhhCCH-----------HHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHH
Confidence 356678889999999999876 3447777777632 356888887765
Q ss_pred HHHHHhcCccccCCCc---ceeeCCCC---CHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhc-
Q 011578 357 MKRVIASNEGFCRRVT---KFFHFNDF---NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR- 429 (482)
Q Consensus 357 ~~~~~~~~~~l~~R~~---~~i~~~~~---~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 429 (482)
...+ +|+|++||. ..+.|+.. +.+.+..+++.+.+.... ......++++++..+...+++....
T Consensus 264 ~~~l---~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~ls~eAl~~Li~~~~r~~g~r 334 (604)
T 3k1j_A 264 VDKM---HPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKR------DGKIPHFTKEAVEEIVREAQKRAGRK 334 (604)
T ss_dssp HHHS---CHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHH------HCSSCCBBHHHHHHHHHHHHHTTCST
T ss_pred Hhhc---CHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhh------ccCcccCCHHHHHHHHHHHhhhhccc
Confidence 4444 999999995 46666543 345666676554443221 0123478999999999988632221
Q ss_pred --cccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHHHHH
Q 011578 430 --REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 476 (482)
Q Consensus 430 --~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~al~~ 476 (482)
-..+.|++.++++.|...+..+ ....|+.+|+.+|++.
T Consensus 335 ~~l~~~~R~l~~llr~A~~~A~~~---------~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 335 GHLTLRLRDLGGIVRAAGDIAVKK---------GKKYVEREDVIEAVKM 374 (604)
T ss_dssp TEEECCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHhc---------CcccccHHHHHHHHHh
Confidence 1247899999999886654221 2246888888888754
No 194
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=1.1e-14 Score=141.27 Aligned_cols=182 Identities=22% Similarity=0.308 Sum_probs=119.4
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEee
Q 011578 203 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 282 (482)
Q Consensus 203 ~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~ 282 (482)
..|++++|++.+++.+...+. .....+++|+||||||||++|+++|+.+.... ....+.+++
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~----------------~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~--~~~~~~~~~ 83 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVD----------------EGKLPHLLFYGPPGTGKTSTIVALAREIYGKN--YSNMVLELN 83 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHH----------------TTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS--HHHHEEEEC
T ss_pred CcHHHhcCcHHHHHHHHHHHh----------------cCCCceEEEECCCCCCHHHHHHHHHHHHcCCC--ccceEEEEc
Confidence 357788999988888876532 12334699999999999999999999885311 011356666
Q ss_pred cccccccccccchhhHHHH---HHh------cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEEE
Q 011578 283 RTDLVGEFVGHTGPKTRRR---IKE------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIF 350 (482)
Q Consensus 283 ~~~~~~~~~g~~~~~~~~~---~~~------a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi~ 350 (482)
.++..+ ...+++. |.+ ....|++|||+|.+.... .+.|+..++. ...++++
T Consensus 84 ~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~-----------~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 84 ASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAA-----------QNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp TTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHH-----------HHHHHHHHHHTTTTEEEEEE
T ss_pred Cccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHH-----------HHHHHHHHhcCCCCeEEEEE
Confidence 554211 1122222 221 125899999999997633 3666666654 3344444
Q ss_pred ecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhcc
Q 011578 351 AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 430 (482)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 430 (482)
++.... ..|++.+|+ ..+.|++++.+++.+++...+++.. ..++++++..++...
T Consensus 147 ~n~~~~------i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~~~-----------~~i~~~~~~~i~~~s------- 201 (340)
T 1sxj_C 147 ANYAHK------LTPALLSQC-TRFRFQPLPQEAIERRIANVLVHEK-----------LKLSPNAEKALIELS------- 201 (340)
T ss_dssp ESCGGG------SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTT-----------CCBCHHHHHHHHHHH-------
T ss_pred ecCccc------cchhHHhhc-eeEeccCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc-------
Confidence 433322 278899999 5899999999999999998886532 245677777777654
Q ss_pred ccCcchhHHHHHHH
Q 011578 431 EMNGGLVDPMLVNA 444 (482)
Q Consensus 431 ~~~~~~l~~~~~~a 444 (482)
.|+.|.+.++++.+
T Consensus 202 ~G~~r~~~~~l~~~ 215 (340)
T 1sxj_C 202 NGDMRRVLNVLQSC 215 (340)
T ss_dssp TTCHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHH
Confidence 45555555555443
No 195
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.58 E-value=8e-17 Score=135.75 Aligned_cols=133 Identities=14% Similarity=0.179 Sum_probs=91.0
Q ss_pred hhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc
Q 011578 207 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 286 (482)
Q Consensus 207 ~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 286 (482)
+++|.+...+.+.+.+.... ....+++|+||||||||++|+++++... +|+.++++.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~--------------~~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~ 62 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA--------------KRTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEY 62 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH--------------TCSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTH
T ss_pred CceeCCHHHHHHHHHHHHHh--------------CCCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhC
Confidence 46788888777777654331 2456899999999999999999997432 7888888876
Q ss_pred cccccccchhhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEEEecCchhHHH-HHh
Q 011578 287 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKR-VIA 362 (482)
Q Consensus 287 ~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi~~~~~~~~~~-~~~ 362 (482)
...+ ....|+.+.+++|||||+|.+.+..| ..|++.+++ ..+.+|++++.+.... .-
T Consensus 63 ~~~~-------~~~~~~~a~~~~l~lDei~~l~~~~q-----------~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~- 123 (143)
T 3co5_A 63 LIDM-------PMELLQKAEGGVLYVGDIAQYSRNIQ-----------TGITFIIGKAERCRVRVIASCSYAAGSDGIS- 123 (143)
T ss_dssp HHHC-------HHHHHHHTTTSEEEEEECTTCCHHHH-----------HHHHHHHHHHTTTTCEEEEEEEECTTTC--C-
T ss_pred ChHh-------hhhHHHhCCCCeEEEeChHHCCHHHH-----------HHHHHHHHhCCCCCEEEEEecCCCHHHHHhC-
Confidence 5433 56778889999999999999987444 566666654 4577777766543211 00
Q ss_pred cCccccCCC-cceeeCCCC
Q 011578 363 SNEGFCRRV-TKFFHFNDF 380 (482)
Q Consensus 363 ~~~~l~~R~-~~~i~~~~~ 380 (482)
.++.+..|+ ...|.+|++
T Consensus 124 ~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 124 CEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp HHHHHHHHSSSEEEEECCC
T ss_pred ccHHHHHHhcCcEEeCCCC
Confidence 134556675 446777765
No 196
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.53 E-value=3.6e-15 Score=150.22 Aligned_cols=207 Identities=12% Similarity=0.095 Sum_probs=117.3
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec--
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR-- 283 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~-- 283 (482)
..++|++.+++.+...+. ...++||+||||||||++|+++|+.+.. ..+|..+.+
T Consensus 22 ~~ivGq~~~i~~l~~al~------------------~~~~VLL~GpPGtGKT~LAraLa~~l~~-----~~~f~~~~~~~ 78 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL------------------SGESVFLLGPPGIAKSLIARRLKFAFQN-----ARAFEYLMTRF 78 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH------------------HTCEEEEECCSSSSHHHHHHHGGGGBSS-----CCEEEEECCTT
T ss_pred hhhHHHHHHHHHHHHHHh------------------cCCeeEeecCchHHHHHHHHHHHHHHhh-----hhHHHHHHHhc
Confidence 358899999887765421 2358999999999999999999986632 223333333
Q ss_pred ---ccccccccccchhhHHHHHHhc------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc---------
Q 011578 284 ---TDLVGEFVGHTGPKTRRRIKEA------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--------- 345 (482)
Q Consensus 284 ---~~~~~~~~g~~~~~~~~~~~~a------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--------- 345 (482)
+++.+.+.+.... -...|..+ ..+|||||||+.+.+ .+.+.|++.|+++.
T Consensus 79 ~t~~dL~G~~~~~~~~-~~g~~~~~~~g~l~~~~IL~IDEI~r~~~-----------~~q~~LL~~lee~~v~i~G~~~~ 146 (500)
T 3nbx_X 79 STPEEVFGPLSIQALK-DEGRYERLTSGYLPEAEIVFLDEIWKAGP-----------AILNTLLTAINERQFRNGAHVEK 146 (500)
T ss_dssp CCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGCCH-----------HHHHHHHHHHHSSEEECSSSEEE
T ss_pred CCHHHhcCcccHHHHh-hchhHHhhhccCCCcceeeeHHhHhhhcH-----------HHHHHHHHHHHHHhccCCCCcCC
Confidence 2333322222111 12233322 235899999998876 45588999987533
Q ss_pred ---EEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCH-HHHHHHHHHHHhcccccccc------------ccccccC
Q 011578 346 ---VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHIKMNNQTEDSLL------------YGFKLHS 409 (482)
Q Consensus 346 ---~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~-~~~~~il~~~l~~~~~~~~~------------~~~~~~~ 409 (482)
.++|+||++-+.. ....+++.+||...+.+|+|+. +++..|++............ .......
T Consensus 147 ~~~~~iI~ATN~lpe~--~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v 224 (500)
T 3nbx_X 147 IPMRLLVAASNELPEA--DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEI 224 (500)
T ss_dssp CCCCEEEEEESSCCCT--TCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTC
T ss_pred cchhhhhhccccCCCc--cccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcc
Confidence 2445665421110 0013588999999999999997 77888887654321100000 0000123
Q ss_pred cccHHHHHHHHHHHhh---HhhccccCcchhHHHHHHHHHHhh
Q 011578 410 SCSMDAIAALIEKETT---EKQRREMNGGLVDPMLVNARENLD 449 (482)
Q Consensus 410 ~~~~~~l~~~~~~~~~---~~~~~~~~~~~l~~~~~~a~~~~~ 449 (482)
.++++.++.++..... .+.....+.|.+..++..|...+.
T Consensus 225 ~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~ 267 (500)
T 3nbx_X 225 TLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAF 267 (500)
T ss_dssp BCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHh
Confidence 4555555555544321 111123456777778777765553
No 197
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.46 E-value=1.7e-12 Score=125.32 Aligned_cols=129 Identities=12% Similarity=0.090 Sum_probs=87.7
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCC-----------------CCCeEEeecccccccccccchhhHHHHHHhc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILP-----------------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA 305 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a 305 (482)
+..+||+||||+|||++|+++|+.+....... ...+..+.+.+- +..+ ....++++++.+
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~~~--~i~~ir~l~~~~ 100 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KNTL--GVDAVREVTEKL 100 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CSSB--CHHHHHHHHHHT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CCCC--CHHHHHHHHHHH
Confidence 44599999999999999999999886432111 012344433210 0111 123455665543
Q ss_pred -------CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEec-CchhHHHHHhcCccccCCCccee
Q 011578 306 -------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG-YSEPMKRVIASNEGFCRRVTKFF 375 (482)
Q Consensus 306 -------~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~-~~~~~~~~~~~~~~l~~R~~~~i 375 (482)
...|++|||+|.+.. .+.+.|+..+++ ..+++|+++ +++. ..|++++|+ ..+
T Consensus 101 ~~~~~~~~~kvviIdead~l~~-----------~a~naLLk~lEep~~~~~~Il~t~~~~~------l~~ti~SRc-~~~ 162 (334)
T 1a5t_A 101 NEHARLGGAKVVWVTDAALLTD-----------AAANALLKTLEEPPAETWFFLATREPER------LLATLRSRC-RLH 162 (334)
T ss_dssp TSCCTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTSCCTTEEEEEEESCGGG------SCHHHHTTS-EEE
T ss_pred hhccccCCcEEEEECchhhcCH-----------HHHHHHHHHhcCCCCCeEEEEEeCChHh------CcHHHhhcc-eee
Confidence 348999999999986 445889999987 345555544 3332 278999999 789
Q ss_pred eCCCCCHHHHHHHHHHH
Q 011578 376 HFNDFNSEELAKILHIK 392 (482)
Q Consensus 376 ~~~~~~~~~~~~il~~~ 392 (482)
+|++|+.+++.++++..
T Consensus 163 ~~~~~~~~~~~~~L~~~ 179 (334)
T 1a5t_A 163 YLAPPPEQYAVTWLSRE 179 (334)
T ss_dssp ECCCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHh
Confidence 99999999999988765
No 198
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.42 E-value=4.1e-13 Score=127.28 Aligned_cols=125 Identities=12% Similarity=0.070 Sum_probs=89.3
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhc-------CCcEEEEecc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEA 315 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~vl~iDE~ 315 (482)
.+++||+||||+|||++|+++|+.+.... .....+..++++. ... +...++++++.+ +..|+||||+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~-~~~~d~~~l~~~~---~~~--~id~ir~li~~~~~~p~~~~~kvviIdea 91 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFP-PKASDVLEIDPEG---ENI--GIDDIRTIKDFLNYSPELYTRKYVIVHDC 91 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSC-CCTTTEEEECCSS---SCB--CHHHHHHHHHHHTSCCSSSSSEEEEETTG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhh-ccCCCEEEEcCCc---CCC--CHHHHHHHHHHHhhccccCCceEEEeccH
Confidence 46899999999999999999999754211 1234667776542 111 122355665543 2379999999
Q ss_pred cccccCCCCCCChhHHHHHHHHHhhhcC--CcEEEEEec-CchhHHHHHhcCccccCCCcceeeCCCCCHHHHHHHHHHH
Q 011578 316 YRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG-YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIK 392 (482)
Q Consensus 316 d~l~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~vi~~~-~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 392 (482)
|.+.. .+.+.|+..|++ ...++|+++ ++.. + .|++++| +++|++|+.+++.+.++..
T Consensus 92 d~lt~-----------~a~naLLk~LEep~~~t~fIl~t~~~~k---l---~~tI~SR---~~~f~~l~~~~i~~~L~~~ 151 (305)
T 2gno_A 92 ERMTQ-----------QAANAFLKALEEPPEYAVIVLNTRRWHY---L---LPTIKSR---VFRVVVNVPKEFRDLVKEK 151 (305)
T ss_dssp GGBCH-----------HHHHHTHHHHHSCCTTEEEEEEESCGGG---S---CHHHHTT---SEEEECCCCHHHHHHHHHH
T ss_pred HHhCH-----------HHHHHHHHHHhCCCCCeEEEEEECChHh---C---hHHHHce---eEeCCCCCHHHHHHHHHHH
Confidence 99986 445899999987 344555543 4332 2 7899999 9999999999999999877
Q ss_pred H
Q 011578 393 M 393 (482)
Q Consensus 393 l 393 (482)
+
T Consensus 152 ~ 152 (305)
T 2gno_A 152 I 152 (305)
T ss_dssp H
T ss_pred h
Confidence 5
No 199
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.38 E-value=6.1e-12 Score=125.28 Aligned_cols=218 Identities=12% Similarity=0.074 Sum_probs=126.5
Q ss_pred hhhhchHHHHHHHHHHH-HHHhHHHHHHHcCCCCCCCCCCceeE--ecCCCCchHHHHHHHHHHHHHcC--CCCCCCeEE
Q 011578 206 SNIVGLHELKIQLRKWA-KGMLLDERRKALGLKVGARRPPHMAF--LGNPGTGKTMVARILGRLLYMVG--ILPTDRVTE 280 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll--~GppGtGKT~la~~la~~~~~~~--~~~~~~~~~ 280 (482)
+.++|.+...+.+.+.+ ..... + . ...+..+++ +||||+|||++++.+++.+.... ......++.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~-------~--~-~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS-------G--A-GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT-------S--S-CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhc-------C--C-CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 45788888888787764 33210 0 0 024557889 99999999999999999875420 001124556
Q ss_pred eecccc------ccc---ccc-------cchh----hHHHHHHh-cCCcEEEEecccccccCCCCCCChhHHHHHHHHHh
Q 011578 281 VQRTDL------VGE---FVG-------HTGP----KTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 339 (482)
Q Consensus 281 ~~~~~~------~~~---~~g-------~~~~----~~~~~~~~-a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~ 339 (482)
+++... ... .+| .+.. .+.+.+.. .++.||+|||++.+...+. . ...++..|+.
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--~---~~~~l~~l~~ 166 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--I---AAEDLYTLLR 166 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--S---CHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--c---chHHHHHHHH
Confidence 664321 111 111 1111 12223332 2357999999999975311 0 1134444444
Q ss_pred hhc-----C--CcEEEEEecCchhHH-HHHhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhccccccccccccccCcc
Q 011578 340 VMD-----G--GKVVVIFAGYSEPMK-RVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 411 (482)
Q Consensus 340 ~l~-----~--~~~~vi~~~~~~~~~-~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~ 411 (482)
.++ + ..+.+|++++...+. .+....+.+.+|+...+.|++++.++..++++..+.... ....+
T Consensus 167 ~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~---------~~~~~ 237 (412)
T 1w5s_A 167 VHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL---------RDTVW 237 (412)
T ss_dssp HHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB---------CTTSC
T ss_pred HHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC---------CCCCC
Confidence 443 3 567777776433332 221112666777766699999999999999988776421 11245
Q ss_pred cHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHh
Q 011578 412 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 448 (482)
Q Consensus 412 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 448 (482)
+++.+..+...... .....|+.+.+.+++..+...+
T Consensus 238 ~~~~~~~i~~~~~~-~~~~~G~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 238 EPRHLELISDVYGE-DKGGDGSARRAIVALKMACEMA 273 (412)
T ss_dssp CHHHHHHHHHHHCG-GGTSCCCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH-hccCCCcHHHHHHHHHHHHHHH
Confidence 77777777765520 0000177788888887776543
No 200
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.32 E-value=5.4e-12 Score=123.29 Aligned_cols=238 Identities=17% Similarity=0.121 Sum_probs=136.3
Q ss_pred hHHHHHHHHhhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHH-HHHHHHcCCCCC
Q 011578 197 KMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARIL-GRLLYMVGILPT 275 (482)
Q Consensus 197 ~~~~~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~l-a~~~~~~~~~~~ 275 (482)
..+.+...+..|.|++.+|..+.-.+.. +. -......|+|+.|+||| ||++|+++ ++.+..
T Consensus 204 ~~~~l~~sIapI~G~e~vK~aLll~L~G----------G~-~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR------ 265 (506)
T 3f8t_A 204 PLTTFARAIAPLPGAEEVGKMLALQLFS----------CV-GKNSERLHVLLAGYPVV-CSEILHHVLDHLAPR------ 265 (506)
T ss_dssp HHHHHHHHHCCSTTCHHHHHHHHHHHTT----------CC-SSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS------
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHcC----------Cc-cccCCceeEEEECCCCh-HHHHHHHHHHHhCCC------
Confidence 3445566666699999988877644200 00 00112348999999999 99999999 764421
Q ss_pred CCeEEeecc---cccccccccch-hhHHHHHHhcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc------
Q 011578 276 DRVTEVQRT---DLVGEFVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK------ 345 (482)
Q Consensus 276 ~~~~~~~~~---~~~~~~~g~~~-~~~~~~~~~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~------ 345 (482)
..|.....+ .+.....+.++ ..-...+..|.++|+||||++.+.+ .....|++.|+++.
T Consensus 266 ~~ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~~-----------~~qsaLlEaMEe~~VtI~G~ 334 (506)
T 3f8t_A 266 GVYVDLRRTELTDLTAVLKEDRGWALRAGAAVLADGGILAVDHLEGAPE-----------PHRWALMEAMDKGTVTVDGI 334 (506)
T ss_dssp EEEEEGGGCCHHHHSEEEEESSSEEEEECHHHHTTTSEEEEECCTTCCH-----------HHHHHHHHHHHHSEEEETTE
T ss_pred eEEecCCCCCccCceEEEEcCCCcccCCCeeEEcCCCeeehHhhhhCCH-----------HHHHHHHHHHhCCcEEECCE
Confidence 111111111 11111000011 1112456678899999999999987 44489999998754
Q ss_pred -----EEEEEecCchhHH------HHHhcCccccCCCcceee-CCCCCHHHH---------HHHHHHHHhcccccccccc
Q 011578 346 -----VVVIFAGYSEPMK------RVIASNEGFCRRVTKFFH-FNDFNSEEL---------AKILHIKMNNQTEDSLLYG 404 (482)
Q Consensus 346 -----~~vi~~~~~~~~~------~~~~~~~~l~~R~~~~i~-~~~~~~~~~---------~~il~~~l~~~~~~~~~~~ 404 (482)
+.||+|+++.+.. .-....+++++|||..+. .+.|+.++- .+.++.++.... .
T Consensus 335 ~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar------~ 408 (506)
T 3f8t_A 335 ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAI------R 408 (506)
T ss_dssp EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHH------H
T ss_pred EcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHH------h
Confidence 5677776665411 011346889999987554 455544321 122222222110 0
Q ss_pred ccccCcccHHHHHHHHHHHhhHhh-----------ccccCcchhHHHHHHHHHHhhhhhcCCCCChhhhhcccHHHHHHH
Q 011578 405 FKLHSSCSMDAIAALIEKETTEKQ-----------RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAG 473 (482)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a 473 (482)
..+.+.+++++...+...+...+. ..+...|.+..++..|...+..+.. ..++.+|+.+|
T Consensus 409 ~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR---------~~V~~eDV~~A 479 (506)
T 3f8t_A 409 EHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLS---------DDVEPEDVDIA 479 (506)
T ss_dssp HCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTC---------SEECHHHHHHH
T ss_pred cCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCc---------CCCCHHHHHHH
Confidence 123467788877777765543221 1234558888888887777654433 47999999999
Q ss_pred HHHHH
Q 011578 474 LKLLL 478 (482)
Q Consensus 474 l~~~~ 478 (482)
+.-+.
T Consensus 480 i~L~~ 484 (506)
T 3f8t_A 480 AELVD 484 (506)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87664
No 201
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.96 E-value=2e-09 Score=121.33 Aligned_cols=147 Identities=13% Similarity=0.129 Sum_probs=94.4
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHHHHHhHHHHH----------HHcC----------CC-----CC-CCCCCc--eeEec
Q 011578 199 DELENELSNIVGLHELKIQLRKWAKGMLLDERR----------KALG----------LK-----VG-ARRPPH--MAFLG 250 (482)
Q Consensus 199 ~~~~~~l~~i~G~~~~k~~l~~~~~~~~~~~~~----------~~~~----------~~-----~~-~~~~~~--~ll~G 250 (482)
......|+++.|.+.+|..+.+.+.+. ..+ .+.+ .. ++ -..|.+ +++||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G 1089 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQ---IEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYG 1089 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHH---HHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEEC
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHH---HhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEc
Confidence 345578999999999999987764433 322 1111 11 11 113444 99999
Q ss_pred CCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc------------cccccc----chhhHHHHHHh---cCCcEEE
Q 011578 251 NPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV------------GEFVGH----TGPKTRRRIKE---AEGGILF 311 (482)
Q Consensus 251 ppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~------------~~~~g~----~~~~~~~~~~~---a~~~vl~ 311 (482)
|||||||++|++++.+.... ..+.+.++..... .+|+++ +++.++.+|.. ...++||
T Consensus 1090 ~~g~GKT~la~~~~~~~~~~----g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~ 1165 (1706)
T 3cmw_A 1090 PESSGKTTLTLQVIAAAQRE----GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 1165 (1706)
T ss_dssp STTSSHHHHHHHHHHHHHHT----TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEE
T ss_pred CCCCChHHHHHHHHHHhhhc----CCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999988764 2344444544422 677888 78888888874 4569999
Q ss_pred EecccccccCCC-----CC-CChhHHHHHHHHHhhhcC----CcEEEEEec
Q 011578 312 VDEAYRLIPMQK-----AD-DKDYGIEALEEIMSVMDG----GKVVVIFAG 352 (482)
Q Consensus 312 iDE~d~l~~~~~-----~~-~~~~~~~~~~~ll~~l~~----~~~~vi~~~ 352 (482)
+||++.|.|.+. ++ +.....+++++++..|+. ..++||+++
T Consensus 1166 ~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~~~n 1216 (1706)
T 3cmw_A 1166 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1216 (1706)
T ss_dssp ESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEEEec
Confidence 999999999842 11 124456789999999987 788887665
No 202
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.91 E-value=1e-09 Score=128.83 Aligned_cols=138 Identities=17% Similarity=0.148 Sum_probs=86.6
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh------------------c
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE------------------A 305 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------------------a 305 (482)
.++||+||||||||++|+.+.... ....++.++.+...+ ...+.+.++. .
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~------~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~g 1335 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS------SLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDI 1335 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC------SSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC------CCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCC
Confidence 578999999999999995554322 122556666554332 1223333321 1
Q ss_pred CCcEEEEecccccccCCCCCCChhHHHHHHHHHhh---hcC--------CcEEEEEecCchhHHHHHhcCccccCCCcce
Q 011578 306 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG--------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKF 374 (482)
Q Consensus 306 ~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~---l~~--------~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~ 374 (482)
+.+||||||++.....+. +.....+++.++++. .+. .++.+|+|+++..---....+|+|.||| .+
T Consensus 1336 k~~VlFiDEinmp~~d~y--g~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~v 1412 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLDKY--GSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AI 1412 (2695)
T ss_dssp SCEEEEEETTTCSCCCSS--SCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EE
T ss_pred ceEEEEeccccccccccc--CchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eE
Confidence 126999999997554432 233344555665542 111 1367888876542000011289999999 89
Q ss_pred eeCCCCCHHHHHHHHHHHHhcc
Q 011578 375 FHFNDFNSEELAKILHIKMNNQ 396 (482)
Q Consensus 375 i~~~~~~~~~~~~il~~~l~~~ 396 (482)
+.++.|+.+++..|+..++...
T Consensus 1413 i~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999888653
No 203
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.87 E-value=6.2e-08 Score=93.76 Aligned_cols=159 Identities=15% Similarity=0.126 Sum_probs=92.8
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
+.++|.+...+.+.+.+.. ...++++||+|+|||++++.+++..+ ++.+++..
T Consensus 12 ~~~~gR~~el~~L~~~l~~------------------~~~v~i~G~~G~GKT~Ll~~~~~~~~---------~~~~~~~~ 64 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN------------------YPLTLLLGIRRVGKSSLLRAFLNERP---------GILIDCRE 64 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH------------------CSEEEEECCTTSSHHHHHHHHHHHSS---------EEEEEHHH
T ss_pred HhcCChHHHHHHHHHHHhc------------------CCeEEEECCCcCCHHHHHHHHHHHcC---------cEEEEeec
Confidence 3578888877777765320 15799999999999999999998641 33333221
Q ss_pred cc------------c---ccccc---------------------chhhHHHH---HHh----cCCcEEEEecccccccCC
Q 011578 286 LV------------G---EFVGH---------------------TGPKTRRR---IKE----AEGGILFVDEAYRLIPMQ 322 (482)
Q Consensus 286 ~~------------~---~~~g~---------------------~~~~~~~~---~~~----a~~~vl~iDE~d~l~~~~ 322 (482)
.. . ..++. ......++ +.. ..+.||+|||++.+....
T Consensus 65 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~ 144 (350)
T 2qen_A 65 LYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG 144 (350)
T ss_dssp HHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC
Confidence 10 0 00000 00112222 221 137899999999987511
Q ss_pred CCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhH-HHH---HhcCccccCCCcceeeCCCCCHHHHHHHHHHHHhc
Q 011578 323 KADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPM-KRV---IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN 395 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~-~~~---~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 395 (482)
. .... ..+..|...++. ..+.+|+++..... ..+ .....++.+|+...+.+++++.++..++++..+..
T Consensus 145 ~-~~~~---~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~ 218 (350)
T 2qen_A 145 S-RGGK---ELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFRE 218 (350)
T ss_dssp T-TTTH---HHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred c-cchh---hHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHH
Confidence 0 0011 222333333332 46666776655443 333 12234566677679999999999999999877654
No 204
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.84 E-value=1.2e-08 Score=98.66 Aligned_cols=160 Identities=9% Similarity=-0.049 Sum_probs=109.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh-------cCCcEEEEec
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDE 314 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~vl~iDE 314 (482)
..+.++|+||+|.||++.++.+++.+...+... ...+.++ | ...++++++. +...|++|||
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~---------~--~~~~~~l~~~~~~~plf~~~kvvii~~ 84 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEE-HHTFSID---------P--NTDWNAIFSLCQAMSLFASRQTLLLLL 84 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCE-EEEEECC---------T--TCCHHHHHHHHHHHHHCCSCEEEEEEC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCe-eEEEEec---------C--CCCHHHHHHHhcCcCCccCCeEEEEEC
Confidence 346799999999999999999999876432110 0111121 1 1223444433 2458999999
Q ss_pred ccc-cccCCCCCCChhHHHHHHHHHhhhcC---CcEEEEEecCchhH---HHHHhcCccccCCCcceeeCCCCCHHHHHH
Q 011578 315 AYR-LIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPM---KRVIASNEGFCRRVTKFFHFNDFNSEELAK 387 (482)
Q Consensus 315 ~d~-l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi~~~~~~~~---~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~ 387 (482)
++. +.... .+.|+..+++ +.++|+.+++.++. ..+ .+++.+|+ .+++|.+++.+++..
T Consensus 85 ~~~kl~~~~-----------~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~---~~~i~sr~-~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 85 PENGPNAAI-----------NEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAW---FTALANRS-VQVTCQTPEQAQLPR 149 (343)
T ss_dssp CSSCCCTTH-----------HHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHH---HHHHTTTC-EEEEECCCCTTHHHH
T ss_pred CCCCCChHH-----------HHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHH---HHHHHhCc-eEEEeeCCCHHHHHH
Confidence 998 76533 3778877776 55666666553321 122 46678888 789999999999999
Q ss_pred HHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHH
Q 011578 388 ILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 446 (482)
Q Consensus 388 il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 446 (482)
.++..+++.. ..++++++..++... .++.+.+.+.++....
T Consensus 150 ~l~~~~~~~g-----------~~i~~~a~~~l~~~~-------~gdl~~~~~elekl~l 190 (343)
T 1jr3_D 150 WVAARAKQLN-----------LELDDAANQVLCYCY-------EGNLLALAQALERLSL 190 (343)
T ss_dssp HHHHHHHHTT-----------CEECHHHHHHHHHSS-------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-----------CCCCHHHHHHHHHHh-------chHHHHHHHHHHHHHH
Confidence 9999887653 356788888888754 5677778887777654
No 205
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.78 E-value=5.7e-09 Score=91.08 Aligned_cols=102 Identities=24% Similarity=0.290 Sum_probs=57.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH-HcCCCCCCCeEEeecccccccccccch-hhHHHHHHh-cCCcEEEEeccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDLVGEFVGHTG-PKTRRRIKE-AEGGILFVDEAYRL 318 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~-a~~~vl~iDE~d~l 318 (482)
....++|+||||||||++++++++.+. ..+. .++.++..++...+..... ......++. ....+|+|||++..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI----RGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC----CCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC----eEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 456899999999999999999999886 3232 3344555544333211000 000012221 25689999999854
Q ss_pred ccCCCCCCChhHHHHHHHHHhhhc-CCcEEEEEecC
Q 011578 319 IPMQKADDKDYGIEALEEIMSVMD-GGKVVVIFAGY 353 (482)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~ll~~l~-~~~~~vi~~~~ 353 (482)
.. +......+..++.... .+..+++.++.
T Consensus 113 ~~------~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 113 RL------SDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp CC------CHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cC------CHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 22 2333445555555443 45555555543
No 206
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.77 E-value=6.4e-09 Score=92.55 Aligned_cols=72 Identities=19% Similarity=0.104 Sum_probs=46.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccccccc----chhhHHHHHHhcCCcEEEEeccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH----TGPKTRRRIKEAEGGILFVDEAYRL 318 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~a~~~vl~iDE~d~l 318 (482)
+.+++|+||||||||++|+++++.+...+ .+++.++++++...+... ......+.+. ...+|||||++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRN----VSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTT----CCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 37899999999999999999999886432 356667766554432211 1111222233 2369999999765
Q ss_pred cc
Q 011578 319 IP 320 (482)
Q Consensus 319 ~~ 320 (482)
..
T Consensus 128 ~~ 129 (202)
T 2w58_A 128 AM 129 (202)
T ss_dssp --
T ss_pred cC
Confidence 43
No 207
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.76 E-value=3.2e-09 Score=89.40 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=45.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhcCCcEEEEeccccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIP 320 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~ 320 (482)
....++|+||+|+|||++++++++.+...+ ...+.++..++... . | .....+|+|||++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g----~~~~~~~~~~~~~~----------~-~-~~~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG----KNAAYIDAASMPLT----------D-A-AFEAEYLAVDQVEKLGN 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTT----CCEEEEETTTSCCC----------G-G-GGGCSEEEEESTTCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcC----CcEEEEcHHHhhHH----------H-H-HhCCCEEEEeCccccCh
Confidence 345799999999999999999999886422 24666666655433 0 1 12468999999988654
No 208
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.69 E-value=3.5e-08 Score=85.94 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.9
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+++|+||||||||++|.++|+.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999874
No 209
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.68 E-value=3.6e-07 Score=88.54 Aligned_cols=138 Identities=17% Similarity=0.223 Sum_probs=81.1
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccc-----c---------------------------cccc
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL-----V---------------------------GEFV 291 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~-----~---------------------------~~~~ 291 (482)
..++++||+|+|||++++.+++.+.. .++.+++... . ....
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~ 103 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNL-------PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQ 103 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTC-------CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTST
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCC-------CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccc
Confidence 47999999999999999999987642 2333443221 0 0000
Q ss_pred c----c----------chhhHHHH---HHhc--CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEec
Q 011578 292 G----H----------TGPKTRRR---IKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG 352 (482)
Q Consensus 292 g----~----------~~~~~~~~---~~~a--~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~ 352 (482)
| . ....+.++ +... .+.||+|||++.+..... .+. ...+..+.+.. ..+.+|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~---~~~-~~~l~~~~~~~--~~~~~i~~g 177 (357)
T 2fna_A 104 GIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG---VNL-LPALAYAYDNL--KRIKFIMSG 177 (357)
T ss_dssp TEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT---CCC-HHHHHHHHHHC--TTEEEEEEE
T ss_pred eEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCc---hhH-HHHHHHHHHcC--CCeEEEEEc
Confidence 0 0 01122233 3332 367999999999875211 111 12233333221 356666666
Q ss_pred CchhH-HHH---HhcCccccCCCcceeeCCCCCHHHHHHHHHHHHh
Q 011578 353 YSEPM-KRV---IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMN 394 (482)
Q Consensus 353 ~~~~~-~~~---~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 394 (482)
..... ..+ .....++.+|+...+.+++++.++..++++..+.
T Consensus 178 ~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 178 SEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp SSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHH
Confidence 65442 332 1223456667778999999999999999988765
No 210
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.66 E-value=5.4e-08 Score=85.80 Aligned_cols=128 Identities=19% Similarity=0.155 Sum_probs=70.1
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCC-CCC-CCeEEeeccccccccc----------c---c--chhhHHHHH--H
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGI-LPT-DRVTEVQRTDLVGEFV----------G---H--TGPKTRRRI--K 303 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~-~~~-~~~~~~~~~~~~~~~~----------g---~--~~~~~~~~~--~ 303 (482)
+.-.+++|+||||||++|..++........ ... .+++..+..++....+ . + ......+.+ .
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 346889999999999999886544321011 111 2333344343332221 1 1 112333333 2
Q ss_pred hcCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC---CcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCC
Q 011578 304 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDF 380 (482)
Q Consensus 304 ~a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~ 380 (482)
..+++||+|||++.+.+.+...... ..++..++. ..+-+|++|.+.. . .+.++++|++..++++++
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~------~rll~~l~~~r~~~~~iil~tq~~~--~---l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKI------PENVQWLNTHRHQGIDIFVLTQGPK--L---LDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCC------CHHHHGGGGTTTTTCEEEEEESCGG--G---BCHHHHTTEEEEEEEEEC
T ss_pred ccCceEEEEEChhhhccCccccchh------HHHHHHHHhcCcCCeEEEEECCCHH--H---HhHHHHHHhheEEEEcCc
Confidence 3347999999999997755321111 134455543 2234444444421 1 267789999999998875
Q ss_pred C
Q 011578 381 N 381 (482)
Q Consensus 381 ~ 381 (482)
.
T Consensus 154 ~ 154 (199)
T 2r2a_A 154 K 154 (199)
T ss_dssp S
T ss_pred c
Confidence 3
No 211
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.57 E-value=4.9e-08 Score=92.63 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=46.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHH-HcCCCCCCCeEEeecccccccccccc-hhhHHHHHHh-cCCcEEEEecccccc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDLVGEFVGHT-GPKTRRRIKE-AEGGILFVDEAYRLI 319 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~-a~~~vl~iDE~d~l~ 319 (482)
..+++|+||||||||++|+++|+.+. ..+. +++.++.+++...+.+.. .....+.+.. ....||||||++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~----~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGV----STTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQ 227 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCC----CEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC--
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCC----cEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCC
Confidence 57899999999999999999999987 6442 566666666544332210 0011111111 234799999997654
No 212
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.46 E-value=2.4e-07 Score=86.77 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=57.2
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHH---HHHHhcCCcEEEEeccccccc
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTR---RRIKEAEGGILFVDEAYRLIP 320 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~a~~~vl~iDE~d~l~~ 320 (482)
..++++||||||||++|..+|...+. ...|+.....+.+..+..+.+..+. +.+.... +|||||++.+..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~-----~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGG-----KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHT-----TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCC-----CEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 45799999999999999999987322 1235554222222222223333333 3333333 999999999976
Q ss_pred CCCCCC-----ChhHHHHHHHHHhhhcCCcEEEEEecC
Q 011578 321 MQKADD-----KDYGIEALEEIMSVMDGGKVVVIFAGY 353 (482)
Q Consensus 321 ~~~~~~-----~~~~~~~~~~ll~~l~~~~~~vi~~~~ 353 (482)
....++ .....+.+..|...+....++++++++
T Consensus 197 ~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn 234 (331)
T 2vhj_A 197 AAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN 234 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC
Confidence 443211 123445566666665554556666654
No 213
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.43 E-value=3.1e-07 Score=83.87 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..+++|+||||||||++|++||+.+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3579999999999999999999864
No 214
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.33 E-value=2.2e-06 Score=74.20 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.1
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+.|.||+|+||||+++.|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999885
No 215
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.32 E-value=4.1e-07 Score=68.13 Aligned_cols=78 Identities=22% Similarity=0.220 Sum_probs=62.0
Q ss_pred eCCCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCC
Q 011578 376 HFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFD 455 (482)
Q Consensus 376 ~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~ 455 (482)
.-.+||.++|.+||+.++++.. +..+++.+.|++.+. +..|++|.+++.+|...+..+.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~---------l~~dvdl~~LA~~T~---------G~SGADL~~l~~eAa~~alr~~--- 65 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMN---------LTRGINLRKIAELMP---------GASGAEVKGVCTEAGMYALRER--- 65 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSE---------ECTTCCCHHHHHTCS---------SCCHHHHHHHHHHHHHHHHHTT---
T ss_pred CCCCcCHHHHHHHHHHHHcCCC---------CCcccCHHHHHHHcC---------CCCHHHHHHHHHHHHHHHHHHc---
Confidence 3478999999999999998653 445677777777666 4568899999999988775543
Q ss_pred CCChhhhhcccHHHHHHHHHHHHhc
Q 011578 456 CLDTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 456 ~~~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
...|+.+||.+|+++++|-
T Consensus 66 ------~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 66 ------RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp ------CSEECHHHHHHHHHHHHCC
T ss_pred ------CCCCCHHHHHHHHHHHccC
Confidence 2579999999999999884
No 216
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.30 E-value=2.3e-06 Score=100.99 Aligned_cols=129 Identities=18% Similarity=0.120 Sum_probs=81.2
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHhc--CCcEEEEecccccccC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPM 321 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a--~~~vl~iDE~d~l~~~ 321 (482)
.+.++.||+|||||++++.+|+.++. +++.+++++-... ..+..+|..+ .|+.++|||++++.+.
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~-------~~v~~nc~e~ld~------~~lg~~~~g~~~~Gaw~~~DE~nr~~~e 712 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGR-------VVVVFNCDDSFDY------QVLSRLLVGITQIGAWGCFDEFNRLDEK 712 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTC-------CCEEEETTSSCCH------HHHHHHHHHHHHHTCEEEEETTTSSCHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCC-------cEEEEECCCCCCh------hHhhHHHHHHHhcCCEeeehhhhhcChH
Confidence 35689999999999999999998887 8888998864321 2334455433 4689999999998762
Q ss_pred CCCCCChhHHHHHHHHHhhhcC--------C-------cEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHH
Q 011578 322 QKADDKDYGIEALEEIMSVMDG--------G-------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELA 386 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~l~~--------~-------~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~ 386 (482)
.. ......+..+...+.+ | ...+++|.++. ..-.-...+++++|| +.+.+..||.+.+.
T Consensus 713 vL----s~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPg-y~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ 786 (2695)
T 4akg_A 713 VL----SAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPG-YNGRSELPENLKKSF-REFSMKSPQSGTIA 786 (2695)
T ss_dssp HH----HHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCC-SSSSCCCCHHHHTTE-EEEECCCCCHHHHH
T ss_pred HH----HHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCC-ccCcccccHHHHhhe-EEEEeeCCCHHHHH
Confidence 11 0000111122233321 1 12344444332 111111257788899 78999999999988
Q ss_pred HHHHH
Q 011578 387 KILHI 391 (482)
Q Consensus 387 ~il~~ 391 (482)
+|+-.
T Consensus 787 ei~l~ 791 (2695)
T 4akg_A 787 EMILQ 791 (2695)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88643
No 217
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.28 E-value=9.3e-07 Score=65.09 Aligned_cols=76 Identities=21% Similarity=0.197 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCC
Q 011578 378 NDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCL 457 (482)
Q Consensus 378 ~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~ 457 (482)
|.|+.++|.+||+.++++.. +..+++.+.|+..+.+ ..|++|.+++..|...+..+
T Consensus 1 plPd~~~R~~Il~~~l~~~~---------~~~~~dl~~la~~t~G---------~SGADi~~l~~eA~~~a~~~------ 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMN---------LTRGINLRKIAELMPG---------ASGAEVKGVCTEAGMYALRE------ 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSE---------ECTTCCHHHHHHTCTT---------CCHHHHHHHHHHHHHHHHHT------
T ss_pred CcCCHHHHHHHHHHHhcCCC---------CCCccCHHHHHHHcCC---------CCHHHHHHHHHHHHHHHHHh------
Confidence 68999999999999998653 4467777777776664 45889999999998887544
Q ss_pred ChhhhhcccHHHHHHHHHHHHhc
Q 011578 458 DTDELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 458 ~~~~~~~i~~~d~~~al~~~~~~ 480 (482)
....|+.+||..|++++...
T Consensus 57 ---~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 57 ---RRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp ---TCSEECHHHHHHHHHHHHC-
T ss_pred ---CCCCCCHHHHHHHHHHHHhc
Confidence 23579999999999998764
No 218
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.24 E-value=4.8e-06 Score=99.03 Aligned_cols=139 Identities=14% Similarity=0.113 Sum_probs=79.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh---------------c--
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE---------------A-- 305 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------------a-- 305 (482)
..++||+||||||||++++.....+ ...+++.++.+.-.. ...+.+.++. +
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l------~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~ 1371 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAF------PDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQ 1371 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGC------TTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESS
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhC------CCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCc
Confidence 4679999999999998765443222 112455566554321 1122222221 1
Q ss_pred --CCcEEEEecccccccCCCCCCChhHHHHHHHHHhh---hcC--------CcEEEEEecCchhHHHHHhcCccccCCCc
Q 011578 306 --EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG--------GKVVVIFAGYSEPMKRVIASNEGFCRRVT 372 (482)
Q Consensus 306 --~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~---l~~--------~~~~vi~~~~~~~~~~~~~~~~~l~~R~~ 372 (482)
+..|+||||++.-.+... +.....+++.++++. .+. ..+.+|+|.++...--....+|+|.+||
T Consensus 1372 ~Gk~~VlFiDDiNmp~~D~y--GtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F- 1448 (3245)
T 3vkg_A 1372 LGKWLVVFCDEINLPSTDKY--GTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA- 1448 (3245)
T ss_dssp TTCEEEEEETTTTCCCCCTT--SCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-
T ss_pred CCceEEEEecccCCCCcccc--ccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-
Confidence 125999999987554322 222223444444432 111 2345666654431000112278999999
Q ss_pred ceeeCCCCCHHHHHHHHHHHHhcc
Q 011578 373 KFFHFNDFNSEELAKILHIKMNNQ 396 (482)
Q Consensus 373 ~~i~~~~~~~~~~~~il~~~l~~~ 396 (482)
.++.++.|+.+++..|+..++...
T Consensus 1449 ~vi~i~~ps~esL~~If~til~~~ 1472 (3245)
T 3vkg_A 1449 PILLVDFPSTSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 779999999999999988776543
No 219
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.10 E-value=7.3e-06 Score=93.82 Aligned_cols=109 Identities=13% Similarity=0.168 Sum_probs=66.3
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc----ccccc------------cchhh---HHH
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVG------------HTGPK---TRR 300 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~----~~~~g------------~~~~~---~~~ 300 (482)
..+...++|+||||||||++|.+++.+....+. ....++..... .+..| ..+.. ++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~----~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK----TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA 1499 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC----CEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC----cEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHH
Confidence 346678999999999999999999998765332 33444433221 22223 12222 333
Q ss_pred HHHhcCCcEEEEecccccccCCC---C-CCChh--HHHHHHHHHhhhc----CCcEEEEEec
Q 011578 301 RIKEAEGGILFVDEAYRLIPMQK---A-DDKDY--GIEALEEIMSVMD----GGKVVVIFAG 352 (482)
Q Consensus 301 ~~~~a~~~vl~iDE~d~l~~~~~---~-~~~~~--~~~~~~~ll~~l~----~~~~~vi~~~ 352 (482)
..++....+|||||++.+.+... . +++.. ..+++++++..|. ...+++|+++
T Consensus 1500 lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1500 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 44556779999999999987431 1 11122 3455555555554 4667777765
No 220
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.08 E-value=2.5e-06 Score=74.33 Aligned_cols=28 Identities=14% Similarity=0.006 Sum_probs=21.9
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.-.+++||+|+||||++..++..+...+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g 31 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK 31 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 3578999999999999977777664433
No 221
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=97.85 E-value=9e-06 Score=61.17 Aligned_cols=72 Identities=14% Similarity=0.127 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChh
Q 011578 381 NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTD 460 (482)
Q Consensus 381 ~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~ 460 (482)
|.++|.+||+.++++.. +..+++.+.|+..+.+ ..|++|.+++.+|...+..+.
T Consensus 2 d~~~R~~Il~~~~~~~~---------~~~dvdl~~lA~~t~G---------~SGADl~~l~~eAa~~a~r~~-------- 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMS---------VERGIRWELISRLCPN---------STGAELRSVCTEAGMFAIRAR-------- 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSC---------BCSCCCHHHHHHTCSS---------CCHHHHHHHHHHHHHHHHHHS--------
T ss_pred CHHHHHHHHHHHHCCCC---------CCCccCHHHHHHHcCC---------CcHHHHHHHHHHHHHHHHHhc--------
Confidence 56899999999998753 4567787777776664 558999999999988775542
Q ss_pred hhhcccHHHHHHHHHHHHh
Q 011578 461 ELRTITLEDLEAGLKLLLR 479 (482)
Q Consensus 461 ~~~~i~~~d~~~al~~~~~ 479 (482)
...|+.+||.+|++++.+
T Consensus 56 -~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 56 -RKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp -CSSBCHHHHHHHHHHHTC
T ss_pred -cccCCHHHHHHHHHHHhc
Confidence 246999999999999876
No 222
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.85 E-value=0.00013 Score=71.71 Aligned_cols=216 Identities=17% Similarity=0.185 Sum_probs=99.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc----------ccccc---------cch-hhHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----------GEFVG---------HTG-PKTRRR 301 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~----------~~~~g---------~~~-~~~~~~ 301 (482)
++..+++.||+|+||||++..||..+...+. .+.-+.+.... ....| ... ......
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~----kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~a 171 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGY----KVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKG 171 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTC----CEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC----eEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHH
Confidence 3556889999999999999999998876442 33333322110 01111 111 112344
Q ss_pred HHhcC---CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEec-CchhHHHHHhcCccccCCC-cceee
Q 011578 302 IKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG-YSEPMKRVIASNEGFCRRV-TKFFH 376 (482)
Q Consensus 302 ~~~a~---~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~-~~~~~~~~~~~~~~l~~R~-~~~i~ 376 (482)
+..+. .-+|+||+...+... .+......+..+...+....+++++-+ +........ ..+...+ ...+-
T Consensus 172 l~~a~~~~~DvvIIDTaGr~~~~----~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a---~~f~~~~~~~gVI 244 (433)
T 3kl4_A 172 VDIFVKNKMDIIIVDTAGRHGYG----EETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA---SRFHQASPIGSVI 244 (433)
T ss_dssp HHHTTTTTCSEEEEEECCCSSSC----CTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH---HHHHHHCSSEEEE
T ss_pred HHHHHhcCCCEEEEECCCCcccc----CCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH---HHHhcccCCcEEE
Confidence 55543 479999998655410 112222334445555555555555543 322221111 1111111 02233
Q ss_pred CCCCCH----HHHHHHHHHHHhcccccccccccccc--CcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhh
Q 011578 377 FNDFNS----EELAKILHIKMNNQTEDSLLYGFKLH--SSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDL 450 (482)
Q Consensus 377 ~~~~~~----~~~~~il~~~l~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 450 (482)
+...|. .....+.... ..+-.....|-.++ ..++++.+....- ...++..+++.|.+....
T Consensus 245 lTKlD~~a~~G~als~~~~~--g~Pi~fig~Ge~v~dL~~f~p~~~~~~ll-----------g~gd~~~l~e~~~~~~~~ 311 (433)
T 3kl4_A 245 ITKMDGTAKGGGALSAVVAT--GATIKFIGTGEKIDELETFNAKRFVSRIL-----------GMGDIESILEKVKGLEEY 311 (433)
T ss_dssp EECGGGCSCHHHHHHHHHHH--TCEEEEEECCSSSSCEEECCHHHHHHHHH-----------CSSHHHHHHHHHHHC---
T ss_pred EecccccccchHHHHHHHHH--CCCEEEEECCCChHhCccCCHHHHHHHhc-----------CCchHHHHHHHHHHhhhH
Confidence 344443 2233333321 11111111122221 2344444444332 234778888887765321
Q ss_pred hhcCCCCCh-hhhh-cccHHHHHHHHHHHHhcC
Q 011578 451 RLSFDCLDT-DELR-TITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 451 r~~~~~~~~-~~~~-~i~~~d~~~al~~~~~~~ 481 (482)
.-..+.... .... .+|.+||.+.++.+++.|
T Consensus 312 ~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~kmg 344 (433)
T 3kl4_A 312 DKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMG 344 (433)
T ss_dssp ----------------CCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcc
Confidence 110001111 1122 699999999999999987
No 223
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=97.83 E-value=9.4e-06 Score=60.45 Aligned_cols=74 Identities=9% Similarity=0.132 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCCh
Q 011578 380 FNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDT 459 (482)
Q Consensus 380 ~~~~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~ 459 (482)
+|.++|.+||+.++++.. +..+++.+.++..+. +..|++|.+++..|...+..+.
T Consensus 1 ~d~~~R~~Il~~~l~~~~---------~~~~vdl~~la~~t~---------G~SGADi~~l~~eA~~~a~~~~------- 55 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKMN---------LSEEVDLEDYVARPD---------KISGADINSICQESGMLAVREN------- 55 (83)
T ss_dssp CCHHHHHHHHHHHHTTSC---------BCTTCCTHHHHTSSC---------CCCHHHHHHHHHHHHHGGGTSC-------
T ss_pred CCHHHHHHHHHHHhCCCC---------CCcccCHHHHHHHcC---------CCCHHHHHHHHHHHHHHHHHhc-------
Confidence 478999999999998653 345667676766655 4568999999999988774442
Q ss_pred hhhhcccHHHHHHHHHHHHhc
Q 011578 460 DELRTITLEDLEAGLKLLLRL 480 (482)
Q Consensus 460 ~~~~~i~~~d~~~al~~~~~~ 480 (482)
...|+.+||..|+++++|.
T Consensus 56 --~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 56 --RYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp --CSSBCHHHHHHHHHHHCC-
T ss_pred --cCCcCHHHHHHHHHHHccC
Confidence 2579999999999999885
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.83 E-value=0.00067 Score=66.71 Aligned_cols=215 Identities=16% Similarity=0.135 Sum_probs=103.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc-------------------ccccccc-hhhHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV-------------------GEFVGHT-GPKTRRR 301 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~g~~-~~~~~~~ 301 (482)
++..+++.||+|+||||++..||..+...+. .+.-+++.... ....+.. ...+++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~----kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~a 174 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGY----KVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEG 174 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTC----CEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCC----eEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHH
Confidence 4567889999999999999999998875442 33333332110 0011111 1223444
Q ss_pred HHhc---CCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEE-ecCchhHHHHHhcCccccCCCcc-eee
Q 011578 302 IKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIF-AGYSEPMKRVIASNEGFCRRVTK-FFH 376 (482)
Q Consensus 302 ~~~a---~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~-~~~~~~~~~~~~~~~~l~~R~~~-~i~ 376 (482)
++.+ ..-+++||.+..+.. +......+..+........+++|+ +++........ ..+...++. -+-
T Consensus 175 l~~a~~~~~DvVIIDTaGrl~~------d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~~~i~gVI 245 (443)
T 3dm5_A 175 VDYFKSKGVDIIIVDTAGRHKE------DKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEATPIGSII 245 (443)
T ss_dssp HHHHHHTTCSEEEEECCCCSSC------CHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHSCTTEEEE
T ss_pred HHHHHhCCCCEEEEECCCcccc------hHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhhCCCeEEE
Confidence 4443 257999998865542 122223344455555555555555 43322222111 112222211 233
Q ss_pred CCCCCHHHHHHHHHHHHhccccccc--ccccccc--CcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhh
Q 011578 377 FNDFNSEELAKILHIKMNNQTEDSL--LYGFKLH--SSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRL 452 (482)
Q Consensus 377 ~~~~~~~~~~~il~~~l~~~~~~~~--~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~ 452 (482)
+...|...+...+............ ..|..++ ..++++.+....- ...++..+++.|.+.....-
T Consensus 246 lTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~ll-----------g~gd~~~l~e~~~~~~~~~~ 314 (443)
T 3dm5_A 246 VTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLL-----------GLGDIQGLLEKFKELEKEVE 314 (443)
T ss_dssp EECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHT-----------TTTCHHHHHHHHHHHHTTHH
T ss_pred EECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHc-----------CCCcHHHHHHHHHHhhhhhH
Confidence 4444443332222222222211111 1122221 1234443333322 24578888888876542110
Q ss_pred --cCCCCChhhhhcccHHHHHHHHHHHHhcC
Q 011578 453 --SFDCLDTDELRTITLEDLEAGLKLLLRLG 481 (482)
Q Consensus 453 --~~~~~~~~~~~~i~~~d~~~al~~~~~~~ 481 (482)
. +....-..-.+|.+||.+-++.+++.|
T Consensus 315 ~~~-~~~~k~~~~~f~l~d~~~q~~~~~kmg 344 (443)
T 3dm5_A 315 IKE-EDIERFLRGKFTLKDMYAQLEAMRKMG 344 (443)
T ss_dssp HHH-HHHHHHHTTCCCHHHHHHHHHHHHTTC
T ss_pred HHH-HHHHHHhhCCcCHHHHHHHHHHHHhcc
Confidence 0 000000112699999999999999887
No 225
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.79 E-value=3.3e-05 Score=92.02 Aligned_cols=120 Identities=17% Similarity=0.106 Sum_probs=79.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccccccchhhHHHHHHh--cCCcEEEEecccccccCC
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLIPMQ 322 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--a~~~vl~iDE~d~l~~~~ 322 (482)
+..+.||+|||||.+++.+|+.++. +++.+++++-... ..+.++|.- ..|+...||||+++..
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr-------~~~vfnC~~~~d~------~~~g~i~~G~~~~GaW~cfDEfNrl~~-- 670 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGR-------FVLVFCCDEGFDL------QAMSRIFVGLCQCGAWGCFDEFNRLEE-- 670 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC-------CEEEEECSSCCCH------HHHHHHHHHHHHHTCEEEEETTTSSCH--
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCC-------eEEEEeCCCCCCH------HHHHHHHhhHhhcCcEEEehhhhcCCH--
Confidence 4478899999999999999999987 8888888764322 122333332 2478899999999865
Q ss_pred CCCCChhHHHHHHHHHhhhc-----------------CC------cEEEEEecCchhHHHHHhcCccccCCCcceeeCCC
Q 011578 323 KADDKDYGIEALEEIMSVMD-----------------GG------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND 379 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~-----------------~~------~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 379 (482)
++++.+.+++. +. ...+++|.++ .+.-.-+.++.++.|| +.+.++.
T Consensus 671 ---------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp-gY~gr~eLP~nLk~lF-r~v~m~~ 739 (3245)
T 3vkg_A 671 ---------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP-GYAGRSNLPDNLKKLF-RSMAMIK 739 (3245)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC-CGGGCCCSCHHHHTTE-EEEECCS
T ss_pred ---------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC-CccCcccChHHHHhhc-EEEEEeC
Confidence 44444433332 21 2344555443 1211112367788899 8899999
Q ss_pred CCHHHHHHHHH
Q 011578 380 FNSEELAKILH 390 (482)
Q Consensus 380 ~~~~~~~~il~ 390 (482)
||.+.+.+|+-
T Consensus 740 Pd~~~i~ei~L 750 (3245)
T 3vkg_A 740 PDREMIAQVML 750 (3245)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999988864
No 226
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.76 E-value=0.00015 Score=72.77 Aligned_cols=93 Identities=18% Similarity=0.214 Sum_probs=56.4
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc----cccccchhhHHHHHHh---------------
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVGHTGPKTRRRIKE--------------- 304 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~--------------- 304 (482)
..+++.||||||||+++.+++..+...+. ..++.+.++.... ..+|.....+...+..
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~---~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~ 122 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE---TGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKE 122 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC---CCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECS
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC---ceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccc
Confidence 38999999999999999999999876443 2344444432211 1122222223333321
Q ss_pred ----cCCcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-EEEEE
Q 011578 305 ----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-VVVIF 350 (482)
Q Consensus 305 ----a~~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~vi~ 350 (482)
....+|+|||+..+.. ..+..|+..+..+. +++++
T Consensus 123 ~~~~~~~~~iiiDE~~~~~~-----------~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 123 VPDLAKCRVLICDEVSMYDR-----------KLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp CCCCSSCSEEEESCGGGCCH-----------HHHHHHHHHSCTTCEEEEEE
T ss_pred cccccCCCEEEEECchhCCH-----------HHHHHHHHhccCCCEEEEEC
Confidence 1347999999988765 44567777776444 33333
No 227
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.75 E-value=5.5e-05 Score=77.76 Aligned_cols=93 Identities=22% Similarity=0.323 Sum_probs=57.6
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc----cccccchhhHHHHHHhc------------C
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVGHTGPKTRRRIKEA------------E 306 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~a------------~ 306 (482)
...+++.||||||||+++.+++..+...+. .++.+.++.-.. +..|.....+...+... .
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~----~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~ 279 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGL----EVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAP 279 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTC----CEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCC----eEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhccccc
Confidence 457899999999999999999998876442 445444432211 11222223333333211 2
Q ss_pred CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-EEEEE
Q 011578 307 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-VVVIF 350 (482)
Q Consensus 307 ~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~vi~ 350 (482)
..+|+|||+..+.. ..+..|+..+..+. +++++
T Consensus 280 ~dvlIIDEasml~~-----------~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 280 YDLLIVDEVSMMGD-----------ALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp CSEEEECCGGGCCH-----------HHHHHHHTTSCTTCEEEEEE
T ss_pred CCEEEEcCccCCCH-----------HHHHHHHHhCcCCCEEEEEe
Confidence 37999999988865 45577777776554 44433
No 228
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.72 E-value=0.00048 Score=63.05 Aligned_cols=133 Identities=11% Similarity=0.040 Sum_probs=63.7
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccccchhhHHHHHHhcCCcEEEEecccccccCCC
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQK 323 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~~ 323 (482)
.+++.||||+||||+|+.||+.++. .++..+....... .++.... ..+ +.+.-.-.|+|+.+-... .
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~-------~~i~~D~~~~~~~~~~~t~~~-~~~--e~~~~~~~~~~~~~~~~~--~ 70 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW-------PVVALDRVQCCPQIATGSGRP-LES--ELQSTRRIYLDSRPLTEG--I 70 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC-------CEEECCSGGGCGGGTTTTTCC-CGG--GGTTCCEECSCCCCGGGC--S
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC-------eEEeccHHhccCCCccccCCC-CHH--HHhCCCeEEEeeeccccc--c
Confidence 4789999999999999999998754 5554433211111 1111000 000 111223466665432110 0
Q ss_pred CCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCCc-ceeeCCCCCHHHHHHHHHH
Q 011578 324 ADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHI 391 (482)
Q Consensus 324 ~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~ 391 (482)
.+...+...+.+.+ +.+..+..+|+..++...+..++.. ..+..+++ ..+.+..|..+.+.+-+..
T Consensus 71 ~~~~~f~~~~~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~-~~~~~~~~~~~i~l~~~~~e~l~~Rl~~ 137 (253)
T 2ze6_A 71 LDAESAHRRLIFEV-DWRKSEEGLILEGGSISLLNCMAKS-PFWRSGFQWHVKRLRLGDSDAFLTRAKQ 137 (253)
T ss_dssp CCHHHHHHHHHHHH-HTTTTSSEEEEEECCHHHHHHHHHC-TTTTSSCEEEEEECCCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH-HHHhCCCCeEEeccHHHHHHHHHhc-ccccccCceEEEEecchhHHHHHHHHHH
Confidence 11123333444555 6666666655555444333333221 11112333 4666777774555444433
No 229
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.66 E-value=6.2e-05 Score=70.91 Aligned_cols=98 Identities=17% Similarity=0.248 Sum_probs=54.4
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccccchhhHHHHHHhcCCcEEEEecccccccCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 322 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~ 322 (482)
..+++.||+|+|||++|+.||+.++. .++..+....... .+| +.+...+..... .-.|+|..+-...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~-------~iis~Ds~qvy~~~~ig-Takp~~~e~~gv--ph~lid~~~~~~~-- 73 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPC-------ELISVDSALIYRGMDIG-TAKPSRELLARY--PHRLIDIRDPAES-- 73 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCE-------EEEEECTTTTBTTCCTT-TTCCCHHHHHHS--CEETSSCBCTTSC--
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC-------cEEeccchhhhcCCCcc-cCCCCHHHHcCC--CEEEeeccCcccc--
Confidence 36889999999999999999997753 5555543322211 111 222222222222 2366776654321
Q ss_pred CCCCChhHHHHHHHHHhhhcCCcEEEEEecCc
Q 011578 323 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 354 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~ 354 (482)
.+..++...+...+-+....++++|++.++.
T Consensus 74 -~~~~~F~~~a~~~i~~i~~~g~~~IlvGGt~ 104 (323)
T 3crm_A 74 -YSAAEFRADALAAMAKATARGRIPLLVGGTM 104 (323)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred -cCHHHHHHHHHHHHHHHHHcCCeEEEECCch
Confidence 1223444455455555556677666666654
No 230
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.64 E-value=0.00022 Score=64.19 Aligned_cols=27 Identities=30% Similarity=0.344 Sum_probs=23.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
+...+++.||||+|||++++.++..+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 445688999999999999999997664
No 231
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.54 E-value=0.00021 Score=63.70 Aligned_cols=28 Identities=18% Similarity=-0.191 Sum_probs=23.3
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.-++++||||+||||++..++..+...+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g 40 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYAD 40 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 3467889999999999999998886544
No 232
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.50 E-value=0.00016 Score=62.98 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=23.5
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.+.+.||+|+||||+.+.|+..+...|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 478999999999999999999886444
No 233
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.46 E-value=9.1e-05 Score=70.40 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=25.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
...+++|.||||+||||++++||+.+..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3456999999999999999999999986
No 234
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.44 E-value=0.00058 Score=65.84 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=45.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc----cccc-----------chhhHHHHH----
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVGH-----------TGPKTRRRI---- 302 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~-----------~~~~~~~~~---- 302 (482)
+..-++++||||+|||++|..++..+...+ .+++.++....... .+|. +...+.+.+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g----~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAG----GTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV 148 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCC----CeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence 444688999999999999999998775432 24444544322111 1111 111222222
Q ss_pred HhcCCcEEEEeccccccc
Q 011578 303 KEAEGGILFVDEAYRLIP 320 (482)
Q Consensus 303 ~~a~~~vl~iDE~d~l~~ 320 (482)
+.....+|+||.+..+.+
T Consensus 149 ~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTTCCSEEEEECTTTCCC
T ss_pred hcCCCCEEEEeChHHhcc
Confidence 223458999999999985
No 235
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.44 E-value=0.00013 Score=70.62 Aligned_cols=98 Identities=14% Similarity=0.030 Sum_probs=52.8
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc-ccccccchhhHHHHHHhcCCcEEEEeccccc
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV-GEFVGHTGPKTRRRIKEAEGGILFVDEAYRL 318 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~a~~~vl~iDE~d~l 318 (482)
..++..++++||||+||||++++|+..+.. .++.+..+... ..++| .+ ....++|+||++.+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g-------~~~~~~~~~~~~~~~lg-------~~---~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGG-------KALNVNLPLDRLNFELG-------VA---IDQFLVVFEDVKGT 228 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCC-------EEECCSSCTTTHHHHHG-------GG---TTCSCEEETTCCCS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCC-------cEEEEeccchhHHHHHH-------Hh---cchhHHHHHHHHHH
Confidence 445668999999999999999999986521 33322222110 00111 11 13467899999988
Q ss_pred cc-CCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCch
Q 011578 319 IP-MQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 355 (482)
Q Consensus 319 ~~-~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~ 355 (482)
.. .+...+.... .....+...++++..+++.++.++
T Consensus 229 ~~~~r~l~~~~~~-~~~~~l~~~ldG~v~v~~~tn~~~ 265 (377)
T 1svm_A 229 GGESRDLPSGQGI-NNLDNLRDYLDGSVKVNLEKKHLN 265 (377)
T ss_dssp TTTTTTCCCCSHH-HHHHTTHHHHHCSSCEEECCSSSC
T ss_pred HHHHhhccccCcc-hHHHHHHHHhcCCCeEeeccCchh
Confidence 76 2221111111 123445555665544444333333
No 236
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.35 E-value=0.00029 Score=67.66 Aligned_cols=75 Identities=20% Similarity=0.258 Sum_probs=45.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc----ccccc-----------chhhH----HHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVGH-----------TGPKT----RRRI 302 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~-----------~~~~~----~~~~ 302 (482)
+..-++++||||+|||++|..++..+...+ ..++.++...... +.+|. +.... +.++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g----~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG----GIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC----CeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 344588999999999999999998776432 2444444332111 11121 11111 1222
Q ss_pred HhcCCcEEEEeccccccc
Q 011578 303 KEAEGGILFVDEAYRLIP 320 (482)
Q Consensus 303 ~~a~~~vl~iDE~d~l~~ 320 (482)
......+|+||++..+.+
T Consensus 136 ~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEcChHhhcc
Confidence 233468999999999985
No 237
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.35 E-value=6.1e-05 Score=64.92 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=27.9
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 285 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 285 (482)
..+++.|+||+||||+|+.|++.++. +++.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~-------~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPE-------PWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSS-------CEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC-------CeEEeccch
Confidence 46899999999999999999998754 566555443
No 238
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.34 E-value=0.00099 Score=60.40 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=22.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
+..-+++.||||+|||+++..++....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445688999999999999998887654
No 239
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.32 E-value=0.00024 Score=64.35 Aligned_cols=23 Identities=30% Similarity=0.196 Sum_probs=20.3
Q ss_pred ceeEecCCCCchHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+++.||+|+|||.+|..++..+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 59999999999999998887754
No 240
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.32 E-value=0.00033 Score=62.42 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=21.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~ 265 (482)
+..-++++||||+|||++++.++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445688999999999999999998
No 241
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.31 E-value=0.0021 Score=56.95 Aligned_cols=74 Identities=19% Similarity=0.181 Sum_probs=45.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec------cccccc----------cccc--chhhHHHHHHh
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR------TDLVGE----------FVGH--TGPKTRRRIKE 304 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~------~~~~~~----------~~g~--~~~~~~~~~~~ 304 (482)
...+++.|+||+|||+++-.+|..+...|.. .-++.+++ ..+... +-|. .+..+.+++.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~--V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~- 82 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVR--VMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK- 82 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCC--EEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH-
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCC--EEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh-
Confidence 3568999999999999999999998776542 12233322 011111 1111 1233445454
Q ss_pred cCCcEEEEecccccc
Q 011578 305 AEGGILFVDEAYRLI 319 (482)
Q Consensus 305 a~~~vl~iDE~d~l~ 319 (482)
.++.+++|||+-...
T Consensus 83 ~~pdlvIVDElG~~~ 97 (228)
T 2r8r_A 83 AAPSLVLVDELAHTN 97 (228)
T ss_dssp HCCSEEEESCTTCBC
T ss_pred cCCCEEEEeCCCCCC
Confidence 357899999997653
No 242
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.30 E-value=0.00043 Score=66.56 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=46.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc----ccccc-----------chhhHHH----HH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVGH-----------TGPKTRR----RI 302 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~-----------~~~~~~~----~~ 302 (482)
+..-++++||||+|||++|..++..+...+ .+++.++...... ..+|. +...+.+ +.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g----~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG----KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC----CeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 445688999999999999999998876533 2455555422111 11111 1112222 23
Q ss_pred HhcCCcEEEEeccccccc
Q 011578 303 KEAEGGILFVDEAYRLIP 320 (482)
Q Consensus 303 ~~a~~~vl~iDE~d~l~~ 320 (482)
+.....+|+||.+..+.+
T Consensus 138 ~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHTCCSEEEEECGGGCCC
T ss_pred hccCCCEEEEcCHHHhcc
Confidence 334568999999999875
No 243
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.29 E-value=0.00012 Score=64.51 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=25.0
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+...++|.||||+||||+++.|++.++.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 35567999999999999999999998864
No 244
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.26 E-value=0.00071 Score=64.81 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=45.2
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc----ccc-----------cch----hhHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVG-----------HTG----PKTRRRIK 303 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~----~~g-----------~~~----~~~~~~~~ 303 (482)
..-++++||||+|||+++..++..+...+ +.++.++....... -+| .+. ..+..+++
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g----g~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG----GVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC----CeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 34578999999999999999999876432 24445554332110 011 111 11222233
Q ss_pred hcCCcEEEEeccccccc
Q 011578 304 EAEGGILFVDEAYRLIP 320 (482)
Q Consensus 304 ~a~~~vl~iDE~d~l~~ 320 (482)
.....+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 34568999999998886
No 245
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.24 E-value=0.00012 Score=63.54 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=24.2
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
...++|.||||+||||+|+.||+.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457999999999999999999998864
No 246
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.23 E-value=0.00062 Score=63.36 Aligned_cols=105 Identities=21% Similarity=0.321 Sum_probs=57.2
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccccchhhHHHHHHhcCCcEEEEecccccccC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM 321 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~ 321 (482)
+.-+++.||+|+|||++|..||+.++. .++..+...+... -+| |.+...+-..... =-|||..+ +.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~-------~iis~Ds~qvY~~~~ig-Takp~~~E~~~v~--hhlid~~~---~~ 76 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPV-------ELISVDSALIYKGMDIG-TAKPNAEELLAAP--HRLLDIRD---PS 76 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCE-------EEEECCTTTTBTTCCTT-TTCCCHHHHHHSC--EETSSCBC---TT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCC-------cEEeccccccccccccc-CCCCCHHHHcCCC--EEEeccCC---cc
Confidence 345788999999999999999997643 4444443322211 111 1111112222222 23555443 12
Q ss_pred CCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHH
Q 011578 322 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~ 360 (482)
...+..++...+...+-+....|++.|++.+|.--+..+
T Consensus 77 e~~s~~~f~~~a~~~i~~i~~~g~~pilVGGTglYi~al 115 (316)
T 3foz_A 77 QAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKAL 115 (316)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHH
Confidence 222234566666666666677788877776665444444
No 247
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.20 E-value=0.00018 Score=63.49 Aligned_cols=34 Identities=29% Similarity=0.507 Sum_probs=27.2
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 287 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 287 (482)
.++|.||||+||+|.|+.||+.++ +..++..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g---------~~~istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG---------FVHISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC---------CEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC---------CeEEcHHHHH
Confidence 478999999999999999999774 4556655544
No 248
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.19 E-value=0.00072 Score=61.21 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
+..-++++||||+|||++++.++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4456889999999999999999974
No 249
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.18 E-value=0.0006 Score=62.05 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~ 265 (482)
+..-+.+.||+|+||||+++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 445688999999999999999994
No 250
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.17 E-value=0.0014 Score=67.84 Aligned_cols=27 Identities=33% Similarity=0.329 Sum_probs=23.2
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
...+++.||||||||+++..+...+..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999988887764
No 251
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.15 E-value=0.00061 Score=61.11 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+..-+.+.||+|+||||+++.++..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34458899999999999999999854
No 252
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.13 E-value=0.00034 Score=67.63 Aligned_cols=101 Identities=12% Similarity=0.152 Sum_probs=55.1
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccccchhhHHHHHHhcCCcEEEEecccccccCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 322 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~ 322 (482)
.-+++.||+|+|||++|..||+.++. .++..+...+... -+| |.+...+ +...--=-|||.++ +..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~-------~iis~Ds~QvYr~l~i~-T~kp~~~--E~~gv~hhlid~~~---~~~ 69 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNG-------EVINSDSMQVYKDIPII-TNKHPLQ--EREGIPHHVMNHVD---WSE 69 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTE-------EEEECCTTTTBSSCTTT-TTCCCGG--GTTTCCEESCSCBC---TTS
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCC-------eEeecCccceecccccc-cCCCCHH--HHcCchhhcCCccC---hHh
Confidence 34778999999999999999998853 3443332212111 011 0000000 11111345667665 222
Q ss_pred CCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhH
Q 011578 323 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM 357 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~ 357 (482)
..+..++...+...+-.....|++.|++.+|.--+
T Consensus 70 ~~s~~~F~~~a~~~i~~i~~~g~~pilVGGTglYi 104 (409)
T 3eph_A 70 EYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYL 104 (409)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTTCEEEEECSCGGGG
T ss_pred HhhHHHHHHHHHHHHHHHHhcCCCEEEECChHHHH
Confidence 22335566677666666677788777766654333
No 253
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.10 E-value=0.00019 Score=62.24 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.2
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
..+..++|+|+|||||||+++.|++.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999997
No 254
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.08 E-value=0.0019 Score=66.86 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=35.1
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHH
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
..++|.+...+.|.+.+... ......++++||+|+|||++|+.+++.
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~--------------~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL--------------KGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS--------------TTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CeecccHHHHHHHHHHHhcc--------------cCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 35789998888888763210 123456889999999999999999864
No 255
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.06 E-value=0.00029 Score=60.43 Aligned_cols=25 Identities=36% Similarity=0.651 Sum_probs=22.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+++.||||+||||+|+.||+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 5899999999999999999998864
No 256
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.05 E-value=0.00027 Score=61.16 Aligned_cols=26 Identities=35% Similarity=0.704 Sum_probs=23.4
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..++|.|+||+||||+|+.|++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35899999999999999999998864
No 257
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.05 E-value=0.00064 Score=60.35 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=28.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG 288 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 288 (482)
.++-+++.||||+||+|.|+.|++.++ +..++..++..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g---------~~hIstGdllR 65 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH---------FNHLSSGDLLR 65 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC---------CEEECHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC---------CceEcHHHHHH
Confidence 445577899999999999999999874 45555555443
No 258
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.05 E-value=0.00026 Score=60.37 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=22.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+++.||||+||||+++.|++.++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~ 27 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKY 27 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998764
No 259
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.03 E-value=0.00057 Score=63.79 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.4
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..+..+++.||||+||||+|+.|++.+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345668899999999999999999866
No 260
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.01 E-value=0.00036 Score=60.75 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=24.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..++|.|+||+||||+++.|++.++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3456889999999999999999998753
No 261
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.00 E-value=0.00029 Score=60.72 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=24.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..+++.|+||+||||+++.|++.++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~ 37 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGL 37 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 4457999999999999999999998753
No 262
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.00 E-value=0.0003 Score=59.86 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=24.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+...++|.|+|||||||+|+.||+.++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3457999999999999999999998875
No 263
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.00 E-value=0.00038 Score=61.23 Aligned_cols=29 Identities=31% Similarity=0.380 Sum_probs=24.9
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..+..++|.|+||+||||+|+.|++.++.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~ 46 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGI 46 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34557899999999999999999998854
No 264
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.98 E-value=0.0011 Score=57.24 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=20.4
Q ss_pred ceeEecCCCCchH-HHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKT-MVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT-~la~~la~~~~~ 269 (482)
-.+++||.|+||| .|.+++.+....
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 3567899999999 888888887653
No 265
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.97 E-value=0.0034 Score=57.57 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=24.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+...+++.||+|+||||+.++++..+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 4456889999999999999999998864
No 266
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.95 E-value=0.0047 Score=57.27 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
...-++++||||+|||++++.++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 344688999999999999999998665
No 267
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.93 E-value=0.00039 Score=59.41 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=22.6
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
..+.|.||||+||||+++.||..++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999765
No 268
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.92 E-value=0.0027 Score=73.20 Aligned_cols=108 Identities=12% Similarity=0.179 Sum_probs=64.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccccc----cc--------cchhhHHHH-------H
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF----VG--------HTGPKTRRR-------I 302 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~----~g--------~~~~~~~~~-------~ 302 (482)
+..-++++|+||+|||++|..+|..+... ..+++.++......++ +| ..+..+.++ .
T Consensus 731 ~G~lilIaG~PG~GKTtLalqlA~~~a~~----g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~ 806 (2050)
T 3cmu_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 806 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHh
Confidence 45568899999999999999999988642 2356666665443332 23 111122222 2
Q ss_pred HhcCCcEEEEeccccccc-CC----CCCCC-hhHHHHHHHHHhhhc----CCcEEEEEecC
Q 011578 303 KEAEGGILFVDEAYRLIP-MQ----KADDK-DYGIEALEEIMSVMD----GGKVVVIFAGY 353 (482)
Q Consensus 303 ~~a~~~vl~iDE~d~l~~-~~----~~~~~-~~~~~~~~~ll~~l~----~~~~~vi~~~~ 353 (482)
.+...++||||.+..+.+ .. ..+.+ +...+.+++++..|. +..+.||+.+.
T Consensus 807 ~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 807 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred hccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 334569999999999986 21 11111 223344555544443 45666666653
No 269
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.91 E-value=0.0072 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+++.||+|+|||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999998754
No 270
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.89 E-value=0.0006 Score=63.58 Aligned_cols=104 Identities=18% Similarity=0.179 Sum_probs=55.7
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccccchhhHHHHHHhcCCcEEEEecccccccCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 322 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~~vl~iDE~d~l~~~~ 322 (482)
.-+++.||+|+|||++|..||+.++. .++..+...+... -+| |.+...+ +...-.=-|||..+ +..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~-------~iis~Ds~QvYr~~~ig-Takp~~~--E~~gvphhlid~~~---~~e 70 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNG-------EVISGDSMQVYRGMDIG-TAKITAE--EMDGVPHHLIDIKD---PSE 70 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTE-------EEEECCGGGGBTTCCTT-TTCCCHH--HHTTCCEESSSCBC---TTS
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCcc-------ceeecCcccceeeeeec-CCCCCHH--HHcCCCEEEeccCC---hhh
Confidence 35788999999999999999986642 3444333222211 111 1111111 11112344666543 222
Q ss_pred CCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHH
Q 011578 323 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 323 ~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~ 360 (482)
..+..++...+...+-.....|++.|++.+|.--+..+
T Consensus 71 ~~s~~~F~~~a~~~i~~i~~~gk~pIlVGGTglYi~aL 108 (322)
T 3exa_A 71 SFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAV 108 (322)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCEEEEESCCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHH
Confidence 22234566666666666667788777766654433333
No 271
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.88 E-value=0.0015 Score=62.19 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+..-++++||||+|||++|..++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 44568899999999999999999764
No 272
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.87 E-value=0.0055 Score=58.79 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=24.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
...+++.||+|+||||+.++++..+..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 346889999999999999999998875
No 273
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.87 E-value=0.0041 Score=63.74 Aligned_cols=44 Identities=16% Similarity=0.033 Sum_probs=33.3
Q ss_pred hchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHH
Q 011578 209 VGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 209 ~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~ 265 (482)
+|.+..++.|.+++..- .......+.++|++|+|||++|+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~-------------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-------------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-------------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc-------------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 58888888888774211 012345688999999999999999996
No 274
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.87 E-value=0.0023 Score=64.66 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=47.4
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK 387 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~ 387 (482)
-||+|||+..+..... ......+..+.+.=..--+.+|++|.....+.+ +..++.-|..+|.|...+..+...
T Consensus 345 ivvVIDE~~~L~~~~~----~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I---~~~Iran~~~RI~lrv~s~~Dsr~ 417 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG----KKVEELIARIAQKARAAGIHLILATQRPSVDVI---TGLIKANIPTRIAFQVSSKIDSRT 417 (574)
T ss_dssp EEEEESCCTTHHHHTC----HHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTS---CHHHHHTCCEEEEECCSCHHHHHH
T ss_pred EEEEEeCHHHHhhhhh----HHHHHHHHHHHHHHhhCCeEEEEEecCcccccc---cHHHHhhhccEEEEEcCCHHHHHH
Confidence 5899999998865321 122233444444433444666666543322222 455667788889999999999888
Q ss_pred HHH
Q 011578 388 ILH 390 (482)
Q Consensus 388 il~ 390 (482)
|+.
T Consensus 418 ILd 420 (574)
T 2iut_A 418 ILD 420 (574)
T ss_dssp HHS
T ss_pred hcC
Confidence 874
No 275
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.86 E-value=0.00064 Score=59.03 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.7
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..++|.||||+||||+++.|++.++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999998874
No 276
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.85 E-value=0.00053 Score=61.25 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=24.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++..++|.|+||+||||+|+.||+.++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4567999999999999999999998753
No 277
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.83 E-value=0.00058 Score=60.06 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=23.8
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+..++|.|+||+||||+|+.|++.++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999998753
No 278
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.82 E-value=0.00085 Score=59.48 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=26.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.+..++|.|+||+||||+++.|++.++..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 456789999999999999999999998644
No 279
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.81 E-value=0.0011 Score=57.89 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=23.7
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
...+.-++|.||+|+|||||++.|++..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3455678899999999999999999865
No 280
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.81 E-value=0.0029 Score=54.90 Aligned_cols=72 Identities=15% Similarity=0.044 Sum_probs=41.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc-------ccccccccc-----hhhHHHHHHhcC--CcEE
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD-------LVGEFVGHT-----GPKTRRRIKEAE--GGIL 310 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~-----~~~~~~~~~~a~--~~vl 310 (482)
-.+++||+|+|||+.+-.+++.+...+. .++.+.+.. .+....|-+ .....++++... .-+|
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~----kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~~~dvV 85 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQ----KIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEEDTEVI 85 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCTTCSEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCC----EEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhccCCEE
Confidence 4678999999999999999988854332 222222110 011111211 011235555543 4799
Q ss_pred EEeccccccc
Q 011578 311 FVDEAYRLIP 320 (482)
Q Consensus 311 ~iDE~d~l~~ 320 (482)
+|||+..+.+
T Consensus 86 iIDEaqfl~~ 95 (191)
T 1xx6_A 86 AIDEVQFFDD 95 (191)
T ss_dssp EECSGGGSCT
T ss_pred EEECCCCCCH
Confidence 9999988754
No 281
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.81 E-value=0.00048 Score=60.11 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=24.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..++|.|+||+||||+|+.|++.++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3457899999999999999999998753
No 282
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.80 E-value=0.00052 Score=58.59 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=22.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++|.|+||+||||+|+.|++.++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999998864
No 283
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.80 E-value=0.00056 Score=58.07 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.7
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++|.|+||+||||+|+.|++.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~ 26 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNI 26 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998864
No 284
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.78 E-value=0.0007 Score=58.84 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++|.|+||+||||+++.|++.++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999874
No 285
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.77 E-value=0.00047 Score=59.49 Aligned_cols=27 Identities=33% Similarity=0.283 Sum_probs=19.9
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+..++|.|+||+||||+|+.|++.++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 456889999999999999999997764
No 286
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.77 E-value=0.0012 Score=60.34 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=24.3
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
..+..++|.||||+||||+|+.|++.++
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456789999999999999999999764
No 287
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.75 E-value=0.00084 Score=60.03 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=24.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..++|.||||+||||+++.||+.++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567999999999999999999998753
No 288
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.75 E-value=0.00056 Score=61.00 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=23.9
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
...++|.|+||+||||+|+.||+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCc
Confidence 457899999999999999999998853
No 289
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.75 E-value=0.0012 Score=58.44 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=26.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.+..++|.|+||+||||+++.|++.++..+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 356789999999999999999999998744
No 290
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.74 E-value=0.00096 Score=58.58 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=25.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
++..+.+.||+|+||||+++.|+..+...|
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G 53 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKG 53 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 455688999999999999999999987533
No 291
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.73 E-value=0.00039 Score=60.51 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=21.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
.+..+++.||||+||||+++.|+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4456889999999999999999974
No 292
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.73 E-value=0.00054 Score=59.31 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=23.0
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..++|.|+||+||||+++.|++.++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46889999999999999999997753
No 293
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.73 E-value=0.00064 Score=58.41 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.1
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
.-+++.||||+||||+|+.|++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3578999999999999999998
No 294
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.73 E-value=0.00085 Score=60.52 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=24.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..++|.|+||+||||+|+.||+.++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4467999999999999999999998853
No 295
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.73 E-value=0.00086 Score=63.31 Aligned_cols=104 Identities=13% Similarity=0.188 Sum_probs=52.7
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccccc-ccccchhhHHHHHHhcCC-cEEEEecccccccC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEG-GILFVDEAYRLIPM 321 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~-~vl~iDE~d~l~~~ 321 (482)
..+++.||+|+|||+||..||+.++. .++..+...+... -+|- .+.. .++..+ .--|||..+--.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~-------eiIs~Ds~qvYr~mdIgT-akp~---~eE~~gvphhlidi~~~~~-- 107 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPL-------EVINSDKMQVYKGLDITT-NKIS---VPDRGGVPHHLLGEVDPAR-- 107 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCE-------EEEECCSSTTBSSCTTTT-TCCC---SGGGTTCCEESSSCBCGGG--
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCC-------cEEcccccccccceeeec-CCCC---HHHHcCCCEeeccccCccc--
Confidence 45889999999999999999986643 4555443322111 1110 0000 011111 235556544201
Q ss_pred CCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHH
Q 011578 322 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~ 360 (482)
...+..++...+...+-+....++++|+..++.--+..+
T Consensus 108 e~~s~~~F~~~a~~~i~~i~~~g~~pIlvGGtglYi~al 146 (339)
T 3a8t_A 108 GELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHAL 146 (339)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHH
Confidence 111123444455444444556677777766654434433
No 296
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.72 E-value=0.0006 Score=60.64 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.2
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++|.||||+||||+|+.|++.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999997753
No 297
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.71 E-value=0.00055 Score=62.22 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=24.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
++..++|.||||+||||+|+.|++.++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 566799999999999999999998774
No 298
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.70 E-value=0.0065 Score=59.80 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=22.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+.-+++.|+||+||||+|+.|++.++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345688999999999999999998653
No 299
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.70 E-value=0.0035 Score=61.13 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~ 265 (482)
+..-++++||||+|||+|++.++-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Confidence 445688999999999999998764
No 300
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.70 E-value=0.0012 Score=60.64 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=24.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
+.-++|.|+||+||||+|+.|++.+...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g 32 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNN 32 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 34688999999999999999999876433
No 301
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.69 E-value=0.00053 Score=61.04 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.++|.||||+||||+|+.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 302
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.69 E-value=0.00067 Score=59.34 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.7
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+..++|.|+||+||||+|+.|++.++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 356899999999999999999998753
No 303
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.68 E-value=0.00068 Score=59.03 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
+..++|.|+||+||||+|+.|++.++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999999774
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.65 E-value=0.0011 Score=58.21 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+..+.+.||||+||||+++.|+..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45568899999999999999999977
No 305
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.65 E-value=0.0034 Score=60.17 Aligned_cols=26 Identities=23% Similarity=0.149 Sum_probs=21.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+..-++++||||+|||++|..+|...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 33457899999999999999999753
No 306
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.65 E-value=0.00057 Score=61.41 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+..++|.||||+||||+|+.|++.++
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456799999999999999999998764
No 307
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.63 E-value=0.0037 Score=71.10 Aligned_cols=77 Identities=16% Similarity=0.174 Sum_probs=48.7
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccccc----cccccc-----------chhhHH----H
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGH-----------TGPKTR----R 300 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~-----------~~~~~~----~ 300 (482)
..+...++++||||+|||++|..+|..+...+ .+++.++..... .+..|- +...+. .
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g----~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREG----KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTT----CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcC----CCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 34556789999999999999999999887532 245555543322 111220 111122 2
Q ss_pred HHHhcCCcEEEEeccccccc
Q 011578 301 RIKEAEGGILFVDEAYRLIP 320 (482)
Q Consensus 301 ~~~~a~~~vl~iDE~d~l~~ 320 (482)
+.+.....+|+||++..+.+
T Consensus 805 lv~~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCCC
T ss_pred HHHccCCCEEEEechhhhcc
Confidence 22334568999999999985
No 308
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.63 E-value=0.0006 Score=58.18 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=19.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+++.||||+||||+|+.| +.++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC
Confidence 5789999999999999999 5543
No 309
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.59 E-value=0.0051 Score=58.46 Aligned_cols=70 Identities=14% Similarity=0.234 Sum_probs=41.3
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc-cc----cc---ccccchhhHHHHHHh---cCCcEEE
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD-LV----GE---FVGHTGPKTRRRIKE---AEGGILF 311 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~-~~----~~---~~g~~~~~~~~~~~~---a~~~vl~ 311 (482)
...+++.||+|+||||+.++|+..+.. ....+.+.... +. .. ++...+...+..+.. ..+.+|+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~-----~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK-----EERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT-----TSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC-----CCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEE
Confidence 457999999999999999999986532 22334443321 10 01 220012233333333 3568999
Q ss_pred Eecccc
Q 011578 312 VDEAYR 317 (482)
Q Consensus 312 iDE~d~ 317 (482)
+||.-.
T Consensus 246 ldE~~~ 251 (330)
T 2pt7_A 246 LGELRS 251 (330)
T ss_dssp ECCCCS
T ss_pred EcCCCh
Confidence 999854
No 310
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.59 E-value=0.01 Score=51.31 Aligned_cols=30 Identities=20% Similarity=0.045 Sum_probs=25.2
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~ 272 (482)
...+++++++|.|||++|-.+|-.....|.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~ 57 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGK 57 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 356889999999999999999998865554
No 311
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.57 E-value=0.0013 Score=56.22 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.7
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
...++|.||||+||||+++.|+..++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 34588999999999999999998764
No 312
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.57 E-value=0.0011 Score=57.59 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.6
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
..++|.|+||+||||+|+.|++.++
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999999775
No 313
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.54 E-value=0.0012 Score=58.35 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.9
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+..++|.|+||+||||+|+.|++.++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 346889999999999999999998865
No 314
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.54 E-value=0.0008 Score=59.17 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+..++|.|+||+||||+++.|++.++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 344688999999999999999998764
No 315
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.52 E-value=0.0012 Score=58.66 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=22.0
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.++|.||||+||||+|+.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999774
No 316
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.48 E-value=0.0013 Score=57.93 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+..++|.||||+||||+++.|++.+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45678999999999999999999866
No 317
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.48 E-value=0.006 Score=59.04 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=24.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+...+++.||+|+||||+.++++..+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 4456889999999999999999998864
No 318
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.46 E-value=0.003 Score=63.40 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=44.7
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecCchhHHHHHhcCccccCCCcceeeCCCCCHHHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK 387 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~ 387 (482)
-||+|||+..+..... ....+.+..|.+.-..--+.+|++|.....+.+ +..++.-|+.+|.|...+..+...
T Consensus 299 ivlvIDE~~~ll~~~~----~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl---~~~i~~n~~~RI~lrv~s~~dsr~ 371 (512)
T 2ius_A 299 IVVLVDEFADLMMTVG----KKVEELIARLAQKARAAGIHLVLATQRPSVDVI---TGLIKANIPTRIAFTVSSKIDSRT 371 (512)
T ss_dssp EEEEEETHHHHHHHHH----HHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTS---CHHHHHHCCEEEEECCSSHHHHHH
T ss_pred EEEEEeCHHHHHhhhh----HHHHHHHHHHHHHhhhCCcEEEEEecCCccccc---cHHHHhhcCCeEEEEcCCHHHHHH
Confidence 4899999987764111 112233333333333324555566543322211 444566778888999999999988
Q ss_pred HHHH
Q 011578 388 ILHI 391 (482)
Q Consensus 388 il~~ 391 (482)
|+..
T Consensus 372 ilg~ 375 (512)
T 2ius_A 372 ILDQ 375 (512)
T ss_dssp HHSS
T ss_pred hcCC
Confidence 8753
No 319
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.44 E-value=0.015 Score=52.26 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=17.6
Q ss_pred CCceeEecCCCCchHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILG 264 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la 264 (482)
...+++.||+|+|||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 3578999999999998666554
No 320
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.43 E-value=0.0018 Score=55.55 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=27.9
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
+..+.|.|++|+||||+++.|+..+...+. +++.++.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~----~~i~~d~ 41 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGI----PCYTLDG 41 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC----CEEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCC----cEEEECC
Confidence 446789999999999999999998853222 5555553
No 321
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.39 E-value=0.0017 Score=58.11 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=23.1
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..+.+.||||+||||+++.|++.++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~ 31 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQW 31 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46889999999999999999997753
No 322
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.38 E-value=0.0018 Score=56.70 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=22.5
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+.|.|+||+||||+++.|++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 4789999999999999999998864
No 323
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.38 E-value=0.0018 Score=58.06 Aligned_cols=28 Identities=39% Similarity=0.385 Sum_probs=24.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..+.+.||||+||||+++.|++.++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3467899999999999999999998853
No 324
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.37 E-value=0.0022 Score=55.41 Aligned_cols=29 Identities=34% Similarity=0.418 Sum_probs=25.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
.+..++|.|+||+||||+++.|+..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 44568899999999999999999998753
No 325
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.37 E-value=0.0023 Score=55.59 Aligned_cols=25 Identities=40% Similarity=0.440 Sum_probs=22.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+.|.|+||+||||+++.|++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999998854
No 326
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=96.36 E-value=0.00023 Score=52.55 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhccccccccccccccCcccHHHHHHHHHHHhhHhhccccCcchhHHHHHHHHHHhhhhhcCCCCChhhh
Q 011578 383 EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDEL 462 (482)
Q Consensus 383 ~~~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~r~~~~~~~~~~~ 462 (482)
++|.+||+.++++.. +..+++.+.++..+. +..|++|.+++..|...+..+- .
T Consensus 1 ~~R~~Il~~~l~~~~---------~~~~vdl~~lA~~t~---------G~SGADi~~l~~eAa~~ai~~~---------~ 53 (82)
T 2dzn_B 1 MERRLIFGTIASKMS---------LAPEADLDSLIIRND---------SLSGAVIAAIMQEAGLRAVRKN---------R 53 (82)
T ss_dssp -------------CE---------ECTTCCSTTTTTSSC---------CCCHHHHHHHHHHHHHHHHHTT---------C
T ss_pred CHHHHHHHHHHcCCC---------CCCcCCHHHHHHHcC---------CCCHHHHHHHHHHHHHHHHHhc---------c
Confidence 468899999887653 345566555555554 4568999999999988775441 2
Q ss_pred hcccHHHHHHHHHHHH
Q 011578 463 RTITLEDLEAGLKLLL 478 (482)
Q Consensus 463 ~~i~~~d~~~al~~~~ 478 (482)
..|+.+||..|++++.
T Consensus 54 ~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 54 YVILQSDLEEAYATQV 69 (82)
T ss_dssp SEECHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHH
Confidence 4799999999999873
No 327
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.36 E-value=0.0022 Score=55.23 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..-+.|.||+|+||||+++.|+..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468899999999999999999865
No 328
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.36 E-value=0.022 Score=64.26 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=36.1
Q ss_pred hhhhchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 206 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 206 ~~i~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..++|.+...++|.+.+... ......+.++|++|+|||+||+.+++..
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~--------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~ 171 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL--------------NGEPGWVTIYGMAGCGKSVLAAEAVRDH 171 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT--------------TTSCEEEEEECSTTSSHHHHHHHHTCCH
T ss_pred ceeccHHHHHHHHHHHHhhc--------------cCCCCEEEEEeCCCCCHHHHHHHHhcCh
Confidence 35789998888888763211 1234557899999999999999998764
No 329
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.33 E-value=0.006 Score=54.35 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=23.1
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
-..+-|.||||+||||+|+.|++.++.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~ 34 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGI 34 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCC
Confidence 356789999999999999999998854
No 330
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.32 E-value=0.016 Score=54.03 Aligned_cols=75 Identities=12% Similarity=0.019 Sum_probs=43.8
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecccccc----ccccc-----------chhhH-HHH------H
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVGH-----------TGPKT-RRR------I 302 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~-----------~~~~~-~~~------~ 302 (482)
.++++||||+|||+|+-.++......+ ..+.++.++...-.. +-+|- +...+ -++ +
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g--~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i 107 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY--PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAI 107 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC--TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC--CCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHh
Confidence 578999999999999988887765421 112445555432111 11111 11111 112 2
Q ss_pred HhcCCcEEEEecccccccC
Q 011578 303 KEAEGGILFVDEAYRLIPM 321 (482)
Q Consensus 303 ~~a~~~vl~iDE~d~l~~~ 321 (482)
++....+|+||-+..+.+.
T Consensus 108 ~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 108 ERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp CTTCCEEEEEECSTTCBCC
T ss_pred hccCceEEEEecccccccc
Confidence 2234589999999999863
No 331
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.32 E-value=0.0025 Score=55.47 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.9
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
+.|.|++|+||||+++.|++.+...+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g 28 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 68999999999999999999885433
No 332
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.29 E-value=0.0024 Score=58.03 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+..+.+.||||+||||+++.|++.++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999998774
No 333
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.25 E-value=0.0024 Score=57.14 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.9
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.++|.||||+||||+|+.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999874
No 334
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.25 E-value=0.0058 Score=61.89 Aligned_cols=29 Identities=34% Similarity=0.678 Sum_probs=25.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
+.-+++.|.||+||||+|+.|++.++..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 34578999999999999999999998744
No 335
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.25 E-value=0.0033 Score=62.78 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=24.4
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..-+++.|+||+|||+++..+|..+..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34456889999999999999999987754
No 336
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.24 E-value=0.0025 Score=56.00 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=22.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
++..+.|.||||+||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 44568899999999999999999855
No 337
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.23 E-value=0.049 Score=47.45 Aligned_cols=46 Identities=15% Similarity=0.447 Sum_probs=27.6
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~~~~ 360 (482)
.+|+|||+|.+.... + ...+..++..+.. ..++++.||-+.....+
T Consensus 148 ~~lViDEah~~~~~~------~-~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~ 194 (206)
T 1vec_A 148 QMIVLDEADKLLSQD------F-VQIMEDIILTLPKNRQILLYSATFPLSVQKF 194 (206)
T ss_dssp CEEEEETHHHHTSTT------T-HHHHHHHHHHSCTTCEEEEEESCCCHHHHHH
T ss_pred CEEEEEChHHhHhhC------c-HHHHHHHHHhCCccceEEEEEeeCCHHHHHH
Confidence 789999999886521 1 2445666666654 34555555555555443
No 338
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.22 E-value=0.0062 Score=53.45 Aligned_cols=70 Identities=13% Similarity=0.010 Sum_probs=39.5
Q ss_pred eeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc--------ccccccccc-----hhhHHHHHHhcC--CcEE
Q 011578 246 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD--------LVGEFVGHT-----GPKTRRRIKEAE--GGIL 310 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~--------~~~~~~g~~-----~~~~~~~~~~a~--~~vl 310 (482)
.+++||.|+|||+.+-.++..+...+. .++.+.+.. +.+. .|-+ .....++++.+. ..+|
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~----kVli~k~~~d~R~ge~~i~s~-~g~~~~a~~~~~~~~~~~~~~~~~dvV 105 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQ----HAIVFKPCIDNRYSEEDVVSH-NGLKVKAVPVSASKDIFKHITEEMDVI 105 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTC----CEEEEECC------------------CCEEECSSGGGGGGGCCSSCCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCC----EEEEEEeccCCcchHHHHHhh-cCCeeEEeecCCHHHHHHHHhcCCCEE
Confidence 457899999999999999988865442 333333221 1111 1110 011123444443 4799
Q ss_pred EEeccccccc
Q 011578 311 FVDEAYRLIP 320 (482)
Q Consensus 311 ~iDE~d~l~~ 320 (482)
+|||+..+.+
T Consensus 106 iIDEaQF~~~ 115 (214)
T 2j9r_A 106 AIDEVQFFDG 115 (214)
T ss_dssp EECCGGGSCT
T ss_pred EEECcccCCH
Confidence 9999988654
No 339
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.20 E-value=0.015 Score=62.96 Aligned_cols=43 Identities=26% Similarity=0.200 Sum_probs=33.2
Q ss_pred hchHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCCCCceeEecCCCCchHHHHHHHHHH
Q 011578 209 VGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 209 ~G~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
+|.+...+.|.+++... .....+.++||+|.|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~---------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL---------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC---------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc---------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 78888888888764311 12456889999999999999999863
No 340
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.19 E-value=0.0027 Score=57.69 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=24.3
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
...+.|.||||+||||+++.||+.++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457999999999999999999998864
No 341
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.18 E-value=0.0021 Score=56.40 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.6
Q ss_pred CCceeEecCCCCchHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+..+.|.|+||+||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999976
No 342
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.16 E-value=0.018 Score=54.34 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=24.1
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..-+++.|+||+|||++|..+|.....
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34556899999999999999999976654
No 343
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.16 E-value=0.0049 Score=58.44 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=21.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+..-++++||||+|||++|..++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 33457899999999999999999753
No 344
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.14 E-value=0.0031 Score=55.70 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=22.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
++.-+.|.||+|+||||+++.|+..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999865
No 345
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.13 E-value=0.044 Score=48.74 Aligned_cols=46 Identities=17% Similarity=0.384 Sum_probs=28.2
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~~~~ 360 (482)
.+|+|||+|.+.... + ...+..++..+.. ..++++.||-++....+
T Consensus 169 ~~lViDEah~~~~~~------~-~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~ 215 (228)
T 3iuy_A 169 TYLVIDEADKMLDME------F-EPQIRKILLDVRPDRQTVMTSATWPDTVRQL 215 (228)
T ss_dssp CEEEECCHHHHHHTT------C-HHHHHHHHHHSCSSCEEEEEESCCCHHHHHH
T ss_pred eEEEEECHHHHhccc------h-HHHHHHHHHhCCcCCeEEEEEeeCCHHHHHH
Confidence 789999999887531 1 1334555666654 44555556656665544
No 346
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.11 E-value=0.0026 Score=55.08 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.2
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
-++|.||||+||||+++.|+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 367899999999999999987
No 347
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.08 E-value=0.0034 Score=55.41 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=24.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++..+.+.||+|+||||+++.|+..+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4456789999999999999999998874
No 348
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.06 E-value=0.0033 Score=55.59 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=24.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+..+++.|+||+||||+++.|++.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345688999999999999999999887
No 349
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.02 E-value=0.0035 Score=55.07 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.7
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+.+.|++|+||||+++.|++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~ 28 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV 28 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5789999999999999999998864
No 350
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.01 E-value=0.0041 Score=54.54 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.7
Q ss_pred CCceeEecCCCCchHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..-+.|.||+|+||||+++.|+..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3457899999999999999999864
No 351
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.98 E-value=0.0062 Score=53.69 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.8
Q ss_pred CceeEecCCCCchHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..+++.+|+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999998887654
No 352
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.98 E-value=0.0026 Score=55.37 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.4
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+.++|++||||||+++.|++.++
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 477999999999999999999764
No 353
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.96 E-value=0.069 Score=47.25 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=27.1
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-EEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-VVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~vi~~~~~~~~~~~ 360 (482)
.+|+|||+|.+..... ...+..++..+..+. ++++.||-++....+
T Consensus 157 ~~iViDEah~~~~~~~-------~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~ 203 (224)
T 1qde_A 157 KMFILDEADEMLSSGF-------KEQIYQIFTLLPPTTQVVLLSATMPNDVLEV 203 (224)
T ss_dssp CEEEEETHHHHHHTTC-------HHHHHHHHHHSCTTCEEEEEESSCCHHHHHH
T ss_pred cEEEEcChhHHhhhhh-------HHHHHHHHHhCCccCeEEEEEeecCHHHHHH
Confidence 7999999998865221 133455666665444 555555555555443
No 354
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.96 E-value=0.064 Score=49.96 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=24.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..++|.||+|+||||++..||..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4557889999999999999999998864
No 355
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.96 E-value=0.0095 Score=58.79 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=24.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
....++|+||||+|||+|+..++.....
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 4567999999999999999999987654
No 356
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.93 E-value=0.0044 Score=54.22 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.4
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
...+.|.||+|+||||+++.|...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45689999999999999999998763
No 357
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.90 E-value=0.0036 Score=54.14 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.5
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
-+.|.||+|+||||+++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999998764
No 358
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.89 E-value=0.036 Score=54.53 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=25.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
.+..+++.|+||+||||++..||..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45679999999999999999999988643
No 359
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.84 E-value=0.0032 Score=57.41 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..+.+.|+||+||||+|+.|++.++.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4456889999999999999999998765
No 360
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.83 E-value=0.0042 Score=54.47 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=20.4
Q ss_pred ceeEecCCCCchHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+.+.|++|+||||+++.|++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 578999999999999999998 5
No 361
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.83 E-value=0.033 Score=54.89 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=25.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
++..+++.|++|+||||++-.||..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999765
No 362
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.82 E-value=0.013 Score=54.98 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=24.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++..+++.||+|+||||++..||..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 4456889999999999999999998865
No 363
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.80 E-value=0.02 Score=56.87 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=24.2
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..-+++.|+||+|||++|..+|.....
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34456889999999999999999987754
No 364
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.79 E-value=0.0046 Score=55.03 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=22.9
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..+...+.|.||+|+||||+++.|+..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3455668899999999999999999855
No 365
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.79 E-value=0.076 Score=51.99 Aligned_cols=28 Identities=25% Similarity=0.193 Sum_probs=24.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++..+++.||+|+||||++..||..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4456778899999999999999998864
No 366
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.77 E-value=0.061 Score=49.13 Aligned_cols=46 Identities=20% Similarity=0.384 Sum_probs=28.6
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-cEEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~vi~~~~~~~~~~~ 360 (482)
.+|+|||+|.+.... + ...+..++..+... .++++.||-++.+..+
T Consensus 203 ~~lViDEah~l~~~~------~-~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~ 249 (262)
T 3ly5_A 203 QCLVIDEADRILDVG------F-EEELKQIIKLLPTRRQTMLFSATQTRKVEDL 249 (262)
T ss_dssp CEEEECSHHHHHHTT------C-HHHHHHHHHHSCSSSEEEEECSSCCHHHHHH
T ss_pred CEEEEcChHHHhhhh------H-HHHHHHHHHhCCCCCeEEEEEecCCHHHHHH
Confidence 789999999887531 1 13456666666554 4555556556666544
No 367
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.76 E-value=0.0048 Score=54.42 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=23.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
++..+.+.||+|+||||+++.|+..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344578999999999999999999875
No 368
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.76 E-value=0.0045 Score=56.46 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
...+.+.||+|+||||+++.|++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 346889999999999999999987753
No 369
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.74 E-value=0.0039 Score=54.80 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.5
Q ss_pred ceeEecCCCCchHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~ 265 (482)
.+.|.||+|+||||+++.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999997
No 370
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.74 E-value=0.0047 Score=53.97 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
.+..+.+.|++|+||||+++.|++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4556889999999999999999985
No 371
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.68 E-value=0.0059 Score=55.03 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=24.8
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..+..+.+.|++|+||||+++.|++.++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~ 42 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGF 42 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35567889999999999999999998753
No 372
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.64 E-value=0.0032 Score=55.66 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
-+.|.|++|+||||+++.|++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3679999999999999999999874
No 373
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.64 E-value=0.025 Score=56.26 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=26.5
Q ss_pred CCCCCCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 237 KVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 237 ~~~~~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+....+..+.|.||+|+||||+++.|+..+..
T Consensus 287 sl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 287 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp CCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eeeccCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 333445556889999999999999999998864
No 374
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.60 E-value=0.014 Score=58.36 Aligned_cols=30 Identities=33% Similarity=0.661 Sum_probs=25.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.+..+++.|.||+||||+++.|++.+...+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 345789999999999999999999988643
No 375
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.60 E-value=0.014 Score=57.10 Aligned_cols=22 Identities=27% Similarity=0.169 Sum_probs=18.4
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
.-.++.|+||||||++...+++
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 3467899999999999988764
No 376
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.56 E-value=0.0054 Score=57.48 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.7
Q ss_pred CceeEecCCCCchHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~ 266 (482)
..+++.|+||+||||+|+.|++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35889999999999999999985
No 377
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.52 E-value=0.069 Score=57.54 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=21.1
Q ss_pred CCceeEecCCCCchHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..-+++.||.|+||||+.|.++...
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHHHH
Confidence 3457899999999999999998654
No 378
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.52 E-value=0.0082 Score=53.82 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=23.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
...-++|.||||+||||+++.|++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3445789999999999999999998864
No 379
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.52 E-value=0.063 Score=56.83 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=16.9
Q ss_pred CCceeEecCCCCchHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVAR 261 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~ 261 (482)
..++++.+|+|+|||+.+.
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 4689999999999999883
No 380
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.51 E-value=0.0065 Score=53.41 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+..+.+.||||+||||+++.|++.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34457799999999999999999854
No 381
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.51 E-value=0.0071 Score=54.83 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=23.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+.-+.+.||+|+||||+++.|+..++.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 4445779999999999999999998753
No 382
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.50 E-value=0.029 Score=49.73 Aligned_cols=91 Identities=18% Similarity=0.108 Sum_probs=47.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc-------ccccccccc-----hhhHHHHHHhcC-CcEEE
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD-------LVGEFVGHT-----GPKTRRRIKEAE-GGILF 311 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~-----~~~~~~~~~~a~-~~vl~ 311 (482)
-.+++||.|+|||+.+-..+......+. .++.+.+.. +.+. .|-+ -....++++.+. ..+|+
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~----kvli~kp~~D~Ryg~~i~sr-~G~~~~a~~i~~~~di~~~~~~~dvVi 95 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQY----KCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLLRDVAQEALGVAVIG 95 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTC----CEEEEEETTCCCC------------CEEEEESSGGGGHHHHTTCSEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCC----eEEEEeecCCccchHHHHhh-cCCeeEEEecCCHHHHHHHhccCCEEE
Confidence 3567899999999888777776653332 222222211 1111 0110 001112333333 37999
Q ss_pred EecccccccCCCCCCChhHHHHHHHHHhhhcCCcEEEEEecC
Q 011578 312 VDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 353 (482)
Q Consensus 312 iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vi~~~~ 353 (482)
|||+.-+.. +.++++.++...+.||+++-
T Consensus 96 IDEaQF~~~-------------v~el~~~l~~~gi~VI~~GL 124 (234)
T 2orv_A 96 IDEGQFFPD-------------IVEFCEAMANAGKTVIVAAL 124 (234)
T ss_dssp ESSGGGCTT-------------HHHHHHHHHHTTCEEEEECC
T ss_pred EEchhhhhh-------------HHHHHHHHHhCCCEEEEEec
Confidence 999977631 35566666554556666653
No 383
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.50 E-value=0.017 Score=52.23 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=20.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
+..-++++|+||+|||++|..+|..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3445889999999999999987754
No 384
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.50 E-value=0.062 Score=48.15 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=26.6
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-EEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-VVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~vi~~~~~~~~~~~ 360 (482)
.+|+|||+|.+..... ...+..++..+..+. ++++.||-++....+
T Consensus 175 ~~lViDEah~~~~~~~-------~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~ 221 (237)
T 3bor_A 175 KMFVLDEADEMLSRGF-------KDQIYEIFQKLNTSIQVVLLSATMPTDVLEV 221 (237)
T ss_dssp CEEEEESHHHHHHTTC-------HHHHHHHHHHSCTTCEEEEECSSCCHHHHHH
T ss_pred cEEEECCchHhhccCc-------HHHHHHHHHhCCCCCeEEEEEEecCHHHHHH
Confidence 7899999998864211 133455666665444 444445545555443
No 385
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.49 E-value=0.0066 Score=53.86 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+..+.+.|++|+|||++++.|++.++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~ 29 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSM 29 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 356889999999999999999997753
No 386
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.47 E-value=0.11 Score=48.44 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=29.8
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhHHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRVI 361 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~~~~~ 361 (482)
.+|+|||+|.+..... ....+..++..+.. ..++++.||.++.+..+.
T Consensus 237 ~~lVlDEad~l~~~~~------~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a 285 (300)
T 3fmo_B 237 KVFVLDEADVMIATQG------HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFA 285 (300)
T ss_dssp SEEEETTHHHHHHSTT------HHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHH
T ss_pred eEEEEeCHHHHhhccC------cHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHH
Confidence 7999999999874211 12334556666654 445666677677666543
No 387
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.46 E-value=0.0055 Score=56.85 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.3
Q ss_pred CCceeEecCCCCchHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~ 265 (482)
+..+.+.|+||+||||+|+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999994
No 388
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.46 E-value=0.014 Score=54.56 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=24.9
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.++..+.|.||+|+||||+++.||..+..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 34556889999999999999999998864
No 389
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.45 E-value=0.11 Score=45.14 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=15.8
Q ss_pred CceeEecCCCCchHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARI 262 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~ 262 (482)
..+++.+|+|+|||..+-.
T Consensus 39 ~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5799999999999987443
No 390
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.43 E-value=0.013 Score=49.55 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=24.8
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~ 272 (482)
..+.+.|++|+||||++..|+..+...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~ 33 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGW 33 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCC
Confidence 46889999999999999999998875443
No 391
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.42 E-value=0.0078 Score=52.70 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=24.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+.-+.+.||+|+||||+++.|+..+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3456889999999999999999998864
No 392
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.41 E-value=0.0061 Score=57.69 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=22.0
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+++.||+|+|||++|+.||+.++
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 578999999999999999999775
No 393
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.40 E-value=0.007 Score=50.75 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+...+.|.||.|+||||+.+.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44457899999999999999999977
No 394
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.40 E-value=0.052 Score=58.61 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=19.7
Q ss_pred ceeEecCCCCchHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~ 267 (482)
-+++.||.|+||||+.|.++...
T Consensus 664 i~~ItGpNGsGKSTlLr~ial~~ 686 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGVIV 686 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999996543
No 395
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.38 E-value=0.0071 Score=51.46 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=18.3
Q ss_pred CCCceeEecCCCCchHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARIL 263 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~l 263 (482)
+..-+.+.||+|+||||+++++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3445789999999999999963
No 396
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.35 E-value=0.0095 Score=55.64 Aligned_cols=28 Identities=36% Similarity=0.618 Sum_probs=24.4
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..+...+.+.||+|+|||||++.|+..+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3455678899999999999999999987
No 397
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.33 E-value=0.01 Score=55.19 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=24.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+.-+.+.||+|+||||+++.|+..+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4556789999999999999999999875
No 398
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.32 E-value=0.0083 Score=52.79 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
...-+.|.||+|+||||++++|+..+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44457899999999999999999866
No 399
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=95.29 E-value=0.053 Score=55.95 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=23.3
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
..++++.+|+|+|||.++-.++..+...
T Consensus 198 ~~~~ll~~~TGsGKT~~~~~~~~~l~~~ 225 (590)
T 3h1t_A 198 KKRSLITMATGTGKTVVAFQISWKLWSA 225 (590)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCceEEEecCCCChHHHHHHHHHHHHhc
Confidence 3568999999999999998888877543
No 400
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.27 E-value=0.0067 Score=52.49 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=21.6
Q ss_pred CCceeEecCCCCchHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
...++|.||||+|||++|..|++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999999743
No 401
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.25 E-value=0.054 Score=54.10 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=20.4
Q ss_pred CceeEecCCCCchHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..+++.+|+|+|||.++-.++..+
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 359999999999999988777655
No 402
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.24 E-value=0.0055 Score=54.98 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=16.5
Q ss_pred CCCceeEecCCCCchHHHHHHHH-HHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILG-RLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la-~~~ 267 (482)
+..-+.|.||+|+||||+++.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 44567899999999999999999 765
No 403
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.21 E-value=0.11 Score=55.12 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=21.6
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.-+++.||.|+||||+.|.++....
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHHHH
Confidence 3478999999999999999998653
No 404
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.20 E-value=0.086 Score=47.37 Aligned_cols=46 Identities=17% Similarity=0.361 Sum_probs=28.5
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcC-CcEEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~vi~~~~~~~~~~~ 360 (482)
..|+|||+|.+.... + ...+..++..+.. ..++++.||-++....+
T Consensus 178 ~~lViDEah~l~~~~------~-~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~ 224 (242)
T 3fe2_A 178 TYLVLDEADRMLDMG------F-EPQIRKIVDQIRPDRQTLMWSATWPKEVRQL 224 (242)
T ss_dssp CEEEETTHHHHHHTT------C-HHHHHHHHTTSCSSCEEEEEESCCCHHHHHH
T ss_pred cEEEEeCHHHHhhhC------c-HHHHHHHHHhCCccceEEEEEeecCHHHHHH
Confidence 689999999887521 1 1344566666654 44555556656665544
No 405
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.20 E-value=0.0096 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.7
Q ss_pred CCceeEecCCCCchHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~ 265 (482)
+..+.+.|++|+||||+++.|++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999997
No 406
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.16 E-value=0.012 Score=52.22 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=22.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
...-+.+.||+|+|||||.++|+..+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 344678999999999999999998653
No 407
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.15 E-value=0.14 Score=49.29 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=17.8
Q ss_pred CCceeEecCCCCchHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILG 264 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la 264 (482)
...+++.+|+|+|||..+-..+
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 4689999999999998765443
No 408
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.13 E-value=0.053 Score=55.02 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=21.9
Q ss_pred CCCceeEecCCCCchHHHHHH--HHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARI--LGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~--la~~~~ 268 (482)
+...+++.||+|+|||||++. ++..+.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 455688999999999999999 455553
No 409
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.13 E-value=0.12 Score=46.70 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=27.4
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-cEEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~vi~~~~~~~~~~~ 360 (482)
.+|+|||+|.+.... + ...+..++..+... .++++.||-+..+..+
T Consensus 188 ~~lViDEah~l~~~~------~-~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~ 234 (249)
T 3ber_A 188 KYLVMDEADRILNMD------F-ETEVDKILKVIPRDRKTFLFSATMTKKVQKL 234 (249)
T ss_dssp CEEEECSHHHHHHTT------C-HHHHHHHHHSSCSSSEEEEEESSCCHHHHHH
T ss_pred CEEEEcChhhhhccC------h-HHHHHHHHHhCCCCCeEEEEeccCCHHHHHH
Confidence 689999999886521 1 13345666666544 4555555555555444
No 410
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.11 E-value=0.15 Score=45.37 Aligned_cols=46 Identities=17% Similarity=0.411 Sum_probs=28.0
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCCc-EEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-VVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~vi~~~~~~~~~~~ 360 (482)
.+|+|||+|.+.... + ...+..++..+..+. ++++.||-++....+
T Consensus 173 ~~lViDEah~~~~~~------~-~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~ 219 (236)
T 2pl3_A 173 QMLVLDEADRILDMG------F-ADTMNAVIENLPKKRQTLLFSATQTKSVKDL 219 (236)
T ss_dssp CEEEETTHHHHHHTT------T-HHHHHHHHHTSCTTSEEEEEESSCCHHHHHH
T ss_pred cEEEEeChHHHhcCC------c-HHHHHHHHHhCCCCCeEEEEEeeCCHHHHHH
Confidence 689999999886421 1 134456666665544 555555555555544
No 411
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.11 E-value=0.0092 Score=52.29 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=23.7
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..+.+.||+|||||++++.||+.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 35889999999999999999999976
No 412
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.10 E-value=0.034 Score=52.44 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=26.0
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
..++..+++.||+|+||||++..||..+...
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3455568899999999999999999988753
No 413
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.05 E-value=0.013 Score=55.08 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=24.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+.-+.+.||+|+||||+++.|+..+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 4445779999999999999999998864
No 414
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.04 E-value=0.02 Score=54.89 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=25.4
Q ss_pred CCCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 240 ARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 240 ~~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..++..+.+.||+|+||||+++.||..+..
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 334556889999999999999999998864
No 415
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.04 E-value=0.014 Score=51.53 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=25.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
..-+.|.|++|+||||+++.|++.+...+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 34 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERG 34 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 34578999999999999999999997644
No 416
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.03 E-value=0.014 Score=55.03 Aligned_cols=29 Identities=0% Similarity=-0.217 Sum_probs=24.1
Q ss_pred ccCCCcceeeCCCCCHHHHHHHHHHHHhc
Q 011578 367 FCRRVTKFFHFNDFNSEELAKILHIKMNN 395 (482)
Q Consensus 367 l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 395 (482)
+...||..|.+..|....+..++++....
T Consensus 223 l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~ 251 (321)
T 3tqc_A 223 VSDFFDFSLFVDAQAQVIQKWYIDRVLSF 251 (321)
T ss_dssp GGGGCSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred hhhhcCeEEEEECCHHHHHHHHHHhcchh
Confidence 67788999999999888888888887654
No 417
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.01 E-value=0.018 Score=51.67 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=26.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~ 272 (482)
.+.-+.|.|++|+||||+++.|++.+...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~ 56 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGI 56 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 3456889999999999999999999987553
No 418
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.00 E-value=0.016 Score=54.35 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=24.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++..+.+.||+|+||||+++.||..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3456889999999999999999998864
No 419
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.99 E-value=0.043 Score=48.07 Aligned_cols=25 Identities=16% Similarity=-0.138 Sum_probs=17.2
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
-.+++||-|+|||+.+-..+..+..
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~ 54 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIY 54 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999944333454543
No 420
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=94.95 E-value=0.062 Score=49.59 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=19.7
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
..++.+|+|+|||.++-.++....
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~ 153 (282)
T 1rif_A 130 RRILNLPTSAGRSLIQALLARYYL 153 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEcCCCCCcHHHHHHHHHHHH
Confidence 467899999999999987776543
No 421
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.94 E-value=0.01 Score=55.27 Aligned_cols=27 Identities=19% Similarity=0.461 Sum_probs=20.6
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+.-+.+.||+|+||||+|+.|++.++.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~ 31 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRR 31 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345889999999999999999998874
No 422
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.84 E-value=0.16 Score=53.73 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=18.4
Q ss_pred CCceeEecCCCCchHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILG 264 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la 264 (482)
..++++.||+|+|||+.+-...
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHHHH
Confidence 5689999999999999985443
No 423
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.81 E-value=0.037 Score=52.96 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=26.6
Q ss_pred CCCCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 239 GARRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 239 ~~~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.......+++.||||+|||++++.|++.+..
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 3446678999999999999999999998864
No 424
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.81 E-value=0.026 Score=48.02 Aligned_cols=29 Identities=38% Similarity=0.440 Sum_probs=24.5
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
..-+.+.||+|+||||+++.|...+...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g 34 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARG 34 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccC
Confidence 34688999999999999999999876543
No 425
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=94.80 E-value=0.21 Score=45.09 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=15.7
Q ss_pred CceeEecCCCCchHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARI 262 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~ 262 (482)
..+++.+|+|+|||..+-.
T Consensus 61 ~~~l~~a~TGsGKT~~~~~ 79 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFLI 79 (253)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5699999999999986543
No 426
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.78 E-value=0.087 Score=52.11 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=24.4
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..-+++.|+||+|||++|-.+|.....
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 34456889999999999999999987764
No 427
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.77 E-value=0.017 Score=59.35 Aligned_cols=38 Identities=29% Similarity=0.320 Sum_probs=28.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeec
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 283 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 283 (482)
.+..++|.|+||+||||+|+.|++.+...+. +++.++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~----~~v~lDg 88 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGI----PCYTLDG 88 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEESH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC----eEEEech
Confidence 3456889999999999999999999853322 5555543
No 428
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.75 E-value=0.019 Score=53.57 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=24.7
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
.+..-+++.||||+|||++++.++..+..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34556889999999999999999998764
No 429
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.73 E-value=0.3 Score=42.91 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=18.1
Q ss_pred CceeEecCCCCchHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~ 266 (482)
..+++.+|+|+|||..+-..+-.
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHH
Confidence 46999999999999876655543
No 430
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.72 E-value=0.22 Score=44.69 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.3
Q ss_pred CceeEecCCCCchHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVAR 261 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~ 261 (482)
..+++.+|+|+|||..+-
T Consensus 67 ~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFS 84 (245)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 569999999999998643
No 431
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.71 E-value=0.33 Score=48.62 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=24.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHcC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 271 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~~ 271 (482)
.+..+++.|+||+||||++..||..+...+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G 129 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG 129 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 456788999999999999999999887543
No 432
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.62 E-value=0.02 Score=51.02 Aligned_cols=28 Identities=25% Similarity=0.231 Sum_probs=21.6
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
..-+.|.||+|+||||+++.|++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4457899999999999999999999764
No 433
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.61 E-value=0.22 Score=46.83 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=17.9
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
.++++.+|+|+|||..+-..+-
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~ 53 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPIL 53 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHH
Confidence 5799999999999987655543
No 434
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.60 E-value=0.16 Score=48.33 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=18.6
Q ss_pred CceeEecCCCCchHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~ 266 (482)
..+++.+|+|+|||+.+-..+..
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 57999999999999987655543
No 435
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.58 E-value=0.017 Score=48.56 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=21.1
Q ss_pred CCceeEecCCCCchHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~ 265 (482)
..+++|.|+||+|||++|..+.+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 436
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.57 E-value=0.021 Score=50.73 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=26.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH-cCC
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM-VGI 272 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~-~~~ 272 (482)
.+.-+.|.|++|+||||+++.|++.+.. .+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~ 51 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGV 51 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCc
Confidence 4455788999999999999999999976 543
No 437
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.54 E-value=0.069 Score=50.74 Aligned_cols=28 Identities=36% Similarity=0.572 Sum_probs=24.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
....+.+.||||+||||+.++|+..+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4456889999999999999999988754
No 438
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.49 E-value=0.021 Score=53.69 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=23.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+.-+.+.||+|+||||+++.|+..+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344577999999999999999999775
No 439
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.48 E-value=0.033 Score=58.14 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=17.6
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
-.|+.||||||||+++-.+...+.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999976555444443
No 440
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.47 E-value=0.031 Score=49.30 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=25.3
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHHcCC
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYMVGI 272 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~~~~ 272 (482)
.-+.|.|++|+||||.++.|++.+...+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 45789999999999999999999987553
No 441
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.44 E-value=0.016 Score=52.36 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.3
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.-+.+.|++|+||||+++.|++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4588999999999999999999773
No 442
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.43 E-value=0.017 Score=57.92 Aligned_cols=28 Identities=4% Similarity=-0.059 Sum_probs=24.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
....++|.|.+|+||||+|++||+.++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3457889999999999999999999974
No 443
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.42 E-value=0.023 Score=53.82 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=24.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
++.-+.|.||+|+||||+++.||..+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4556889999999999999999998865
No 444
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.37 E-value=0.02 Score=51.01 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=23.5
Q ss_pred CceeEecCCCCchHHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..+.+.|++|||||++|+.||+.++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~ 40 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGI 40 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCC
Confidence 45789999999999999999999975
No 445
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.28 E-value=0.015 Score=49.36 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.4
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
.+.+.||+|+||||+++.|+..+...
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 57899999999999999999998763
No 446
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.27 E-value=0.18 Score=53.37 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=21.3
Q ss_pred ceeEecCCCCchHHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.+++.||+|+||||+.|.++....
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhhhh
Confidence 477999999999999999998763
No 447
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.25 E-value=0.021 Score=50.18 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=21.1
Q ss_pred CceeEecCCCCchHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~ 266 (482)
..+.+.||+|+|||||.++|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999998
No 448
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.23 E-value=0.23 Score=52.33 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=17.7
Q ss_pred CCceeEecCCCCchHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARIL 263 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~l 263 (482)
..++++.+|+|+|||+.+-..
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~ 60 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMA 60 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHHHH
Confidence 468999999999999988443
No 449
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.22 E-value=0.31 Score=47.34 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=16.7
Q ss_pred CceeEecCCCCchHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILG 264 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la 264 (482)
..+++.+|+|+|||..+-..+
T Consensus 75 ~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEECCCCCCchHHHHHHH
Confidence 569999999999997665433
No 450
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.22 E-value=0.12 Score=45.45 Aligned_cols=46 Identities=30% Similarity=0.372 Sum_probs=28.1
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-cEEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~vi~~~~~~~~~~~ 360 (482)
.+|+|||+|.+..... ...+..++..+..+ .++++.||-++.+..+
T Consensus 152 ~~lViDEah~~~~~~~-------~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~ 198 (219)
T 1q0u_A 152 HILVVDEADLMLDMGF-------ITDVDQIAARMPKDLQMLVFSATIPEKLKPF 198 (219)
T ss_dssp CEEEECSHHHHHHTTC-------HHHHHHHHHTSCTTCEEEEEESCCCGGGHHH
T ss_pred eEEEEcCchHHhhhCh-------HHHHHHHHHhCCcccEEEEEecCCCHHHHHH
Confidence 7899999999864211 13445666666543 4555556555555444
No 451
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.18 E-value=0.032 Score=49.30 Aligned_cols=27 Identities=30% Similarity=0.191 Sum_probs=23.8
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
..-+.|.|++|+||||+++.|++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456889999999999999999998863
No 452
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.14 E-value=0.026 Score=57.78 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=25.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHHc
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYMV 270 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~~ 270 (482)
.+..++|.|+||+||||+|++|++.+...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~ 423 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQ 423 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhccc
Confidence 34568899999999999999999999853
No 453
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=94.12 E-value=0.26 Score=47.82 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=16.3
Q ss_pred CCceeEecCCCCchHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVAR 261 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~ 261 (482)
...+++.+|+|+|||..+-
T Consensus 64 ~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCchHHHHHH
Confidence 4689999999999998753
No 454
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.08 E-value=0.018 Score=58.51 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=24.4
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
....+.|.|++|+||||++++|+..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3456889999999999999999999874
No 455
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.07 E-value=0.47 Score=41.99 Aligned_cols=47 Identities=21% Similarity=0.373 Sum_probs=28.1
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-cEEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~vi~~~~~~~~~~~ 360 (482)
.+|+|||+|.+.... .+ ...+..++..+..+ .++++.||-++....+
T Consensus 168 ~~lViDEah~~~~~~-----~~-~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~ 215 (230)
T 2oxc_A 168 RLFILDEADKLLEEG-----SF-QEQINWIYSSLPASKQMLAVSATYPEFLANA 215 (230)
T ss_dssp CEEEESSHHHHHSTT-----SS-HHHHHHHHHHSCSSCEEEEEESCCCHHHHHH
T ss_pred CEEEeCCchHhhcCc-----ch-HHHHHHHHHhCCCCCeEEEEEeccCHHHHHH
Confidence 689999999986531 01 23445666666543 4555556555555444
No 456
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=94.07 E-value=0.39 Score=52.66 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=17.4
Q ss_pred CceeEecCCCCchHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILG 264 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la 264 (482)
.++++.+|+|+|||.++....
T Consensus 102 ~~vLV~apTGSGKTlva~lai 122 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAEYAI 122 (1010)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHH
Confidence 579999999999999875433
No 457
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.07 E-value=0.25 Score=54.07 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=18.8
Q ss_pred CceeEecCCCCchHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILG 264 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la 264 (482)
.-+++.||.|+||||+.|.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 457899999999999999994
No 458
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.06 E-value=0.048 Score=52.35 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=24.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
....+.+.|+||+||||++..|+..+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4457899999999999999999988754
No 459
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.00 E-value=0.025 Score=50.79 Aligned_cols=25 Identities=24% Similarity=0.590 Sum_probs=21.6
Q ss_pred CCCCceeEecCCCCchHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~ 265 (482)
.+...+.+.||+|+||||+.++|+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3455688999999999999999996
No 460
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.94 E-value=0.059 Score=45.91 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=19.1
Q ss_pred eeEecCCCCchHHHHHHHHHH
Q 011578 246 MAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 246 ~ll~GppGtGKT~la~~la~~ 266 (482)
++++|++|+|||++|+.++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 688999999999999999864
No 461
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=93.90 E-value=0.41 Score=47.11 Aligned_cols=46 Identities=24% Similarity=0.468 Sum_probs=27.3
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhc--C-CcEEEEEecCchhHHHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD--G-GKVVVIFAGYSEPMKRV 360 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~--~-~~~~vi~~~~~~~~~~~ 360 (482)
.+|+|||+|.+.... + ...+..++..+. . ..++++.||-+..+..+
T Consensus 205 ~~lVlDEah~~~~~g------f-~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~ 253 (434)
T 2db3_A 205 RFVVLDEADRMLDMG------F-SEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRM 253 (434)
T ss_dssp CEEEEETHHHHTSTT------T-HHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHH
T ss_pred CeEEEccHhhhhccC------c-HHHHHHHHHhcCCCCCceEEEEeccCCHHHHHH
Confidence 789999999987531 1 133355555542 2 44556666666665544
No 462
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.90 E-value=0.027 Score=50.70 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=22.1
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+ ..+.+.||+|+||||+.++|+..+
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 567899999999999999999743
No 463
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.89 E-value=0.027 Score=50.64 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=22.9
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+...+.+.||+|+||||+.++|+..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568899999999999999999755
No 464
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.88 E-value=0.026 Score=50.32 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=21.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
+...+.+.||+|+|||||.++|+..
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4445779999999999999999963
No 465
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=93.88 E-value=0.28 Score=48.97 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.3
Q ss_pred CCCceeEecCCCCchHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVA 260 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la 260 (482)
.+..+++.+|+|+|||..+
T Consensus 130 ~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 130 PPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp SCCEEEEECCSSSSHHHHH
T ss_pred CCCcEEEEcCCCCchhHHH
Confidence 3578999999999999774
No 466
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.82 E-value=0.4 Score=46.34 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=26.5
Q ss_pred cEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-cEEEEEecCchhHH
Q 011578 308 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMK 358 (482)
Q Consensus 308 ~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~vi~~~~~~~~~ 358 (482)
.+|+|||+|.+... .....+..++..+... .++++.||-+....
T Consensus 165 ~~vIiDEaH~~~~~-------~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~ 209 (400)
T 1s2m_A 165 SLFIMDEADKMLSR-------DFKTIIEQILSFLPPTHQSLLFSATFPLTVK 209 (400)
T ss_dssp CEEEEESHHHHSSH-------HHHHHHHHHHTTSCSSCEEEEEESCCCHHHH
T ss_pred CEEEEeCchHhhhh-------chHHHHHHHHHhCCcCceEEEEEecCCHHHH
Confidence 79999999988641 1234456666666544 44555555444443
No 467
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=93.81 E-value=0.44 Score=47.07 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=26.5
Q ss_pred ceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeecc
Q 011578 245 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 284 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 284 (482)
++++..|+|+|||..+-.++..... ......+.+.+.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~---~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLT---KYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHH---HSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHh---cCCCeEEEEECC
Confidence 7999999999999999888766532 112355555554
No 468
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.76 E-value=0.038 Score=48.63 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
....+++.|++|+|||++..++...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5578999999999999999999873
No 469
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.75 E-value=0.025 Score=54.56 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=23.0
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
...+.+.||+|+|||||++.|+..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999998764
No 470
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.74 E-value=0.095 Score=53.16 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=24.1
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+...+++.||||+|||++++.++.....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 4556889999999999999999987753
No 471
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.73 E-value=0.044 Score=46.95 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.7
Q ss_pred CCCceeEecCCCCchHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~ 265 (482)
....+++.|++|+|||+|...+..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999988876
No 472
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.72 E-value=0.01 Score=54.40 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+.-++|.|++|+||||+++.|++.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 44568899999999999999999866
No 473
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.72 E-value=0.24 Score=48.35 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=17.1
Q ss_pred CceeEecCCCCchHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGR 265 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~ 265 (482)
..+++.+|+|+|||..+-..+.
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~~ 58 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTAL 58 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHH
Confidence 5799999999999995544433
No 474
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.68 E-value=0.035 Score=47.40 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.7
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
.-.+++||.|+|||++.++|+-.++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3568999999999999999998664
No 475
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=93.67 E-value=0.27 Score=49.61 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=16.7
Q ss_pred CCceeEecCCCCchHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARI 262 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~ 262 (482)
...+++.+|+|+|||..+-.
T Consensus 158 ~~~~ll~apTGsGKT~~~~~ 177 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFAL 177 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHH
T ss_pred CCCEEEECCCCccHHHHHHH
Confidence 46899999999999987543
No 476
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.67 E-value=0.46 Score=52.61 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=54.8
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHHHcCCCCCCCeEEeeccc-cc--------------ccccc------------cch
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD-LV--------------GEFVG------------HTG 295 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~~g------------~~~ 295 (482)
...+++.+|+|+|||+++-..+......+ ...+.+.+.. +. +-+.| -|.
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~~~l~~g----~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~~~~~~IlV~Tp 274 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIAQSLKNK----QRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTT 274 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHHHHHHTT----CEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCBCCCSCSEEEEEH
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHHhcC----CeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccccCCCCCEEEeCh
Confidence 46799999999999998765544332211 2344444432 10 00111 133
Q ss_pred hhHHHHHHhcC-----CcEEEEecccccccCCCCCCChhHHHHHHHHHhhhcCC-cEEEEEecCch
Q 011578 296 PKTRRRIKEAE-----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSE 355 (482)
Q Consensus 296 ~~~~~~~~~a~-----~~vl~iDE~d~l~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~vi~~~~~~ 355 (482)
..+...+.... -++|+|||+|.+... + -...+..++..+... +++++.||-++
T Consensus 275 e~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~------~-rg~~~e~ii~~l~~~~qvl~lSATipn 333 (1108)
T 3l9o_A 275 EILRSMLYRGSEVMREVAWVIFDEVHYMRDK------E-RGVVWEETIILLPDKVRYVFLSATIPN 333 (1108)
T ss_dssp HHHHHHHHHCSSHHHHEEEEEEETGGGTTSH------H-HHHHHHHHHHHSCTTSEEEEEECSCSS
T ss_pred HHHHHHHHcCccccccCCEEEEhhhhhcccc------c-hHHHHHHHHHhcCCCceEEEEcCCCCC
Confidence 44444443322 279999999988642 1 113445566666554 44555555334
No 477
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.64 E-value=0.033 Score=49.22 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
+...+.+.||+|+||||+.++|+..
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4456789999999999999999863
No 478
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.60 E-value=0.033 Score=50.93 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=21.8
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
.+...+.+.||+|+|||||.++|+..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34456789999999999999999963
No 479
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.59 E-value=0.17 Score=50.95 Aligned_cols=28 Identities=7% Similarity=-0.096 Sum_probs=23.3
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLLYM 269 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~~~ 269 (482)
+..-+++.|+||+|||++|..+|.....
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHH
Confidence 4445889999999999999999987643
No 480
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.57 E-value=0.037 Score=50.84 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=21.2
Q ss_pred ceeEecCCCCchHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+.+.||+|+||||+.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999876
No 481
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=93.52 E-value=0.23 Score=50.05 Aligned_cols=25 Identities=12% Similarity=0.267 Sum_probs=20.7
Q ss_pred CceeEecCCCCchHHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
..+++++|+|+|||.++-.++....
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~~~ 153 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARYYL 153 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999977776543
No 482
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.51 E-value=0.038 Score=52.75 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
...-+.+.||+|+||||+.|+|+...
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 44457899999999999999999854
No 483
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.47 E-value=0.033 Score=53.31 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.5
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+..-+.++||||+|||++++.++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44457899999999999999999865
No 484
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=93.44 E-value=0.43 Score=52.25 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=18.5
Q ss_pred CceeEecCCCCchHHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~~ 267 (482)
..+++.+|+|+|||+++......+
T Consensus 55 ~~vlv~apTGsGKTlv~~~~i~~~ 78 (997)
T 4a4z_A 55 DSVFVAAHTSAGKTVVAEYAIAMA 78 (997)
T ss_dssp CEEEEECCTTSCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHHHH
Confidence 579999999999998755544433
No 485
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.43 E-value=0.043 Score=50.27 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.1
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
.+...+.+.||+|+|||||.+.|+..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34556889999999999999999963
No 486
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.39 E-value=0.04 Score=47.83 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.7
Q ss_pred CceeEecCCCCchHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~ 266 (482)
..+++.||+|+|||+|.+.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999873
No 487
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.39 E-value=0.027 Score=51.36 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=21.8
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+...+.+.||+|+||||+.++|+..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44567899999999999999998643
No 488
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.38 E-value=0.04 Score=47.52 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.5
Q ss_pred CceeEecCCCCchHHHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la~~ 266 (482)
..+.+.||+|+|||+|.+.++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999874
No 489
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.38 E-value=0.09 Score=46.33 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.9
Q ss_pred CCceeEecCCCCchHHHHHHHHHHHH
Q 011578 243 PPHMAFLGNPGTGKTMVARILGRLLY 268 (482)
Q Consensus 243 ~~~~ll~GppGtGKT~la~~la~~~~ 268 (482)
...+++.|++|+|||+++..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999999998763
No 490
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.38 E-value=0.038 Score=50.51 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=21.9
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
....-+.+.||+|+|||||.++|+..
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 34556789999999999999999964
No 491
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.35 E-value=0.043 Score=49.77 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.6
Q ss_pred CCCceeEecCCCCchHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
+...+.+.||+|+||||+.++|+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456789999999999999999974
No 492
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.32 E-value=0.31 Score=47.29 Aligned_cols=21 Identities=29% Similarity=0.177 Sum_probs=16.6
Q ss_pred CceeEecCCCCchHHHHHHHH
Q 011578 244 PHMAFLGNPGTGKTMVARILG 264 (482)
Q Consensus 244 ~~~ll~GppGtGKT~la~~la 264 (482)
..+++.+|+|+|||+.+-..+
T Consensus 78 ~~~lv~a~TGsGKT~~~~~~~ 98 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFAISI 98 (414)
T ss_dssp CCEEECCCSCSSSHHHHHHHH
T ss_pred CCEEEECCCCCcccHHHHHHH
Confidence 469999999999998754433
No 493
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.30 E-value=0.033 Score=51.27 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=21.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+..-+.+.||+|+||||+.++|+..+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34457899999999999999999744
No 494
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.27 E-value=0.29 Score=55.37 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=20.0
Q ss_pred ceeEecCCCCchHHHHHHHHHHH
Q 011578 245 HMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 245 ~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+.+.||+|+||||+++.|.+++
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSS
T ss_pred EEEEEecCCCcHHHHHHHhcccc
Confidence 45689999999999999998754
No 495
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.27 E-value=0.04 Score=50.33 Aligned_cols=26 Identities=31% Similarity=0.600 Sum_probs=22.1
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRL 266 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~ 266 (482)
.+...+.+.||+|+||||+.++|+..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34556889999999999999999974
No 496
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.24 E-value=0.038 Score=49.99 Aligned_cols=26 Identities=19% Similarity=0.586 Sum_probs=21.9
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+...+.+.||+|+||||+.++|+..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44567899999999999999998743
No 497
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.24 E-value=0.04 Score=50.63 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=22.5
Q ss_pred CCCCceeEecCCCCchHHHHHHHHHHH
Q 011578 241 RRPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 241 ~~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
.+...+.+.||+|+|||||.++|+..+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345567899999999999999999743
No 498
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.24 E-value=0.035 Score=50.17 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+...+.+.||+|+||||+.++|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44457899999999999999999754
No 499
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.22 E-value=0.04 Score=49.24 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.0
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
+...+.+.||+|+||||+.++|+..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44567899999999999999999754
No 500
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.20 E-value=0.048 Score=52.50 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=22.2
Q ss_pred CCCceeEecCCCCchHHHHHHHHHHH
Q 011578 242 RPPHMAFLGNPGTGKTMVARILGRLL 267 (482)
Q Consensus 242 ~~~~~ll~GppGtGKT~la~~la~~~ 267 (482)
...-+.|.||+|+||||+.|+|+..+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 44557899999999999999999854
Done!