BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011579
(482 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N5N|X Chain X, Crystal Structure Analysis Of The Catalytic Domain And
Interdomain Connector Of Human Muty Homologue
pdb|3N5N|Y Chain Y, Crystal Structure Analysis Of The Catalytic Domain And
Interdomain Connector Of Human Muty Homologue
Length = 287
Score = 251 bits (640), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 124/219 (56%), Positives = 147/219 (67%), Gaps = 4/219 (1%)
Query: 79 EVKKIRQSLLQWYDKNQRELPWXXXXXXXXXXXXXXXAYGVWVSEVMLQQTRVQTVIDYY 138
EV R SLL WYD+ +R+LPW AY VWVSEVMLQQT+V TVI+YY
Sbjct: 14 EVTAFRGSLLSWYDQEKRDLPWRRRAEDEMDLDRR--AYAVWVSEVMLQQTQVATVINYY 71
Query: 139 NRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLR 197
WM KWPT+ LA ASLEEVN++WAGLGYY R R L EGA+ +V E G P T L+
Sbjct: 72 TGWMQKWPTLQDLASASLEEVNQLWAGLGYYSRGRRLQEGARKVVEELGGHMPRTAETLQ 131
Query: 198 KV-PGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQL 256
++ PG+G YTAGAIASIAF + VVDGNV RVL R++AI A+P T + W LA QL
Sbjct: 132 QLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAIGADPSSTLVSQQLWGLAQQL 191
Query: 257 VDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQA 295
VD RPGDFNQ+ MELGA +CTP P C+ CPV C+A
Sbjct: 192 VDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRA 230
>pdb|3FSP|A Chain A, Muty Adenine Glycosylase Bound To A Transition State
Analog (1n) Paired With Dg In Duplexed Dna
pdb|3FSQ|A Chain A, Muty Adenine Glycosylase Bound To A Transition State
Analog (1n) Paired With D(8-Oxog) In Duplexed Dna
Length = 369
Score = 202 bits (515), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 182/338 (53%), Gaps = 40/338 (11%)
Query: 81 KKIRQSLLQWYDKNQRELPWXXXXXXXXXXXXXXXAYGVWVSEVMLQQTRVQTVIDYYNR 140
++ ++ LL W+ + +R+LPW Y VWVSEVMLQQTRV+TVI Y+ +
Sbjct: 14 REFQRDLLDWFARERRDLPWRKDRD----------PYKVWVSEVMLQQTRVETVIPYFEQ 63
Query: 141 WMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKV 199
++ ++PT+ LA A +EV + W GLGYY R R L K + G P+ + ++
Sbjct: 64 FIDRFPTLEALADADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRL 123
Query: 200 PGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDS 259
G+G YT GA+ S+A+ P VDGNV+RVL+RL ++ + ST K F ++ +++
Sbjct: 124 KGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIMAY 183
Query: 260 CRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQ 319
PG FN++L+ELGA++CTP P+C CPV CQA++ + P+K+ K
Sbjct: 184 ENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEG------VAEELPVKMKKTAV 237
Query: 320 RHDVSAACVVEILGGNDESERTQPDGVFILVKRRDE-GLLAGLWEFPSIILDGETDITTR 378
+ A V+ +DE +L+++RD GLLA LWEFPS ETD
Sbjct: 238 KQVPLAVAVL----ADDEGR--------VLIRKRDSTGLLANLWEFPSC----ETDGADG 281
Query: 379 REAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHI 416
+E E + + + L + L E + F H FSH+
Sbjct: 282 KEKLEQMVGEQYGL------QVELTEPIVSFEHAFSHL 313
>pdb|3G0Q|A Chain A, Crystal Structure Of Muty Bound To Its Inhibitor Dna
Length = 352
Score = 202 bits (514), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 182/338 (53%), Gaps = 40/338 (11%)
Query: 81 KKIRQSLLQWYDKNQRELPWXXXXXXXXXXXXXXXAYGVWVSEVMLQQTRVQTVIDYYNR 140
++ ++ LL W+ + +R+LPW Y VWVSEVMLQQTRV+TVI Y+ +
Sbjct: 3 REFQRDLLDWFARERRDLPWRKDRD----------PYKVWVSEVMLQQTRVETVIPYFEQ 52
Query: 141 WMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKV 199
++ ++PT+ LA A +EV + W GLGYY R R L K + G P+ + ++
Sbjct: 53 FIDRFPTLEALADADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRL 112
Query: 200 PGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDS 259
G+G YT GA+ S+A+ P VDGNV+RVL+RL ++ + ST K F ++ +++
Sbjct: 113 KGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLVTDDIAKCSTRKRFEQIVREIMAY 172
Query: 260 CRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQ 319
PG FN++L+ELGA++CTP P+C CPV CQA++ + P+K+ K
Sbjct: 173 ENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEG------VAEELPVKMKKTAV 226
Query: 320 RHDVSAACVVEILGGNDESERTQPDGVFILVKRRDE-GLLAGLWEFPSIILDGETDITTR 378
+ A V+ +DE +L+++RD GLLA LWEFPS ETD
Sbjct: 227 KQVPLAVAVL----ADDEGR--------VLIRKRDSTGLLANLWEFPSC----ETDGADG 270
Query: 379 REAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHI 416
+E E + + + L + L E + F H FSH+
Sbjct: 271 KEKLEQMVGEQYGL------QVELTEPIVSFEHAFSHL 302
>pdb|1RRS|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
Abasic Site
pdb|1VRL|A Chain A, Muty Adenine Glycosylase In Complex With Dna And Soaked
Adenine Free Base
Length = 369
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 40/338 (11%)
Query: 81 KKIRQSLLQWYDKNQRELPWXXXXXXXXXXXXXXXAYGVWVSEVMLQQTRVQTVIDYYNR 140
++ ++ LL W+ + +R+LPW Y VWVSEVMLQQTRV+TVI Y+ +
Sbjct: 14 REFQRDLLDWFARERRDLPWRKDRD----------PYKVWVSEVMLQQTRVETVIPYFEQ 63
Query: 141 WMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKV 199
++ ++PT+ LA A +EV + W GLGYY R R L K + G P+ + ++
Sbjct: 64 FIDRFPTLEALADADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRL 123
Query: 200 PGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDS 259
G+G YT GA+ S+A+ P V+GNV+RVL+RL ++ + ST K F ++ +++
Sbjct: 124 KGVGPYTVGAVLSLAYGVPEPAVNGNVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIMAY 183
Query: 260 CRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQ 319
PG FN++L+ELGA++CTP P+C CPV CQA++ + P+K+ K
Sbjct: 184 ENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEG------VAEELPVKMKKTAV 237
Query: 320 RHDVSAACVVEILGGNDESERTQPDGVFILVKRRDE-GLLAGLWEFPSIILDGETDITTR 378
+ A V+ +DE +L+++RD GLLA LWEFPS ETD
Sbjct: 238 KQVPLAVAVL----ADDEGR--------VLIRKRDSTGLLANLWEFPSC----ETDGADG 281
Query: 379 REAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHI 416
+E E + + + L + L E + F H FSH+
Sbjct: 282 KEKLEQMVGEQYGL------QVELTEPIVSFEHAFSHL 313
>pdb|1RRQ|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
A:oxog Pair
Length = 369
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 40/338 (11%)
Query: 81 KKIRQSLLQWYDKNQRELPWXXXXXXXXXXXXXXXAYGVWVSEVMLQQTRVQTVIDYYNR 140
++ ++ LL W+ + +R+LPW Y VWVSEVMLQQTRV+TVI Y+ +
Sbjct: 14 REFQRDLLDWFARERRDLPWRKDRD----------PYKVWVSEVMLQQTRVETVIPYFEQ 63
Query: 141 WMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKV 199
++ ++PT+ LA A +EV + W GLGYY R R L K + G P+ + ++
Sbjct: 64 FIDRFPTLEALADADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRL 123
Query: 200 PGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDS 259
G+G YT GA+ S+A+ P V+GNV+RVL+RL ++ + ST K F ++ +++
Sbjct: 124 KGVGPYTVGAVLSLAYGVPEPAVNGNVMRVLSRLFLVTDDIAKCSTRKRFEQIVREIMAY 183
Query: 260 CRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQ 319
PG FN++L+ELGA++CTP P+C CPV CQA++ + P+K+ K
Sbjct: 184 ENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEG------VAEELPVKMKKTAV 237
Query: 320 RHDVSAACVVEILGGNDESERTQPDGVFILVKRRDE-GLLAGLWEFPSIILDGETDITTR 378
+ A V+ +DE +L+++RD GLLA LWEFPS ETD
Sbjct: 238 KQVPLAVAVL----ADDEGR--------VLIRKRDSTGLLANLWEFPSC----ETDGADG 281
Query: 379 REAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHI 416
+E E + + + L + L E + F H FSH+
Sbjct: 282 KEKLEQMVGEQYGL------QVELTEPIVSFEHAFSHL 313
>pdb|1KG7|A Chain A, Crystal Structure Of The E161a Mutant Of E.coli Muty (core
Fragment)
Length = 225
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 12/219 (5%)
Query: 79 EVKKIRQSLLQWYDKNQRE-LPWXXXXXXXXXXXXXXXAYGVWVSEVMLQQTRVQTVIDY 137
+ + +L WYDK R+ LPW Y VW+SEVMLQQT+V TVI Y
Sbjct: 2 QASQFSAQVLDWYDKYGRKTLPWQIDKT----------PYKVWLSEVMLQQTQVATVIPY 51
Query: 138 YNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVA-EGDGFPNTVSDL 196
+ R+M ++PT+ LA A L+EV +W GLGYY RAR L + A+ + G FP T ++
Sbjct: 52 FERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEV 111
Query: 197 RKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQL 256
+PG+G TAGAI S++ + P++DGNV RVLAR A+S P W L+ Q+
Sbjct: 112 AALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVANKLWSLSEQV 171
Query: 257 VDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQA 295
+ FNQ++M+LGA+ICT P C+ CP+ + C A
Sbjct: 172 TPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIA 210
>pdb|1KG4|A Chain A, Crystal Structure Of The K142a Mutant Of E. Coli Muty
(Core Fragment)
pdb|1WEG|A Chain A, Catalytic Domain Od Muty Form Escherichia Coli K142a
Mutant
Length = 225
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 12/219 (5%)
Query: 79 EVKKIRQSLLQWYDKNQRE-LPWXXXXXXXXXXXXXXXAYGVWVSEVMLQQTRVQTVIDY 137
+ + +L WYDK R+ LPW Y VW+SEVMLQQT+V TVI Y
Sbjct: 2 QASQFSAQVLDWYDKYGRKTLPWQIDKT----------PYKVWLSEVMLQQTQVATVIPY 51
Query: 138 YNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVA-EGDGFPNTVSDL 196
+ R+M ++PT+ LA A L+EV +W GLGYY RAR L + A+ + G FP T ++
Sbjct: 52 FERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEV 111
Query: 197 RKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQL 256
+PG+G TAGAI S++ + P++DGNV RVLAR A+S P W L+ Q+
Sbjct: 112 AALPGVGRSTAGAILSLSLGKHFPILDGNVARVLARCYAVSGWPGKKEVENKLWSLSEQV 171
Query: 257 VDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQA 295
+ FNQ++M+LGA+ICT P C+ CP+ + C A
Sbjct: 172 TPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIA 210
>pdb|1MUY|A Chain A, Catalytic Domain Of Muty From Escherichia Coli
pdb|1KG2|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.2a Resolution
pdb|1KG3|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.55a Resolution
Length = 225
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 12/219 (5%)
Query: 79 EVKKIRQSLLQWYDKNQRE-LPWXXXXXXXXXXXXXXXAYGVWVSEVMLQQTRVQTVIDY 137
+ + +L WYDK R+ LPW Y VW+SEVMLQQT+V TVI Y
Sbjct: 2 QASQFSAQVLDWYDKYGRKTLPWQIDKT----------PYKVWLSEVMLQQTQVATVIPY 51
Query: 138 YNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVA-EGDGFPNTVSDL 196
+ R+M ++PT+ LA A L+EV +W GLGYY RAR L + A+ + G FP T ++
Sbjct: 52 FERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEV 111
Query: 197 RKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQL 256
+PG+G TAGAI S++ + P++DGNV RVLAR A+S P W L+ Q+
Sbjct: 112 AALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQV 171
Query: 257 VDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQA 295
+ FNQ++M+LGA+ICT P C+ CP+ + C A
Sbjct: 172 TPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIA 210
>pdb|1KG5|A Chain A, Crystal Structure Of The K142q Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 12/219 (5%)
Query: 79 EVKKIRQSLLQWYDKNQRE-LPWXXXXXXXXXXXXXXXAYGVWVSEVMLQQTRVQTVIDY 137
+ + +L WYDK R+ LPW Y VW+SEVMLQQT+V TVI Y
Sbjct: 2 QASQFSAQVLDWYDKYGRKTLPWQIDKT----------PYKVWLSEVMLQQTQVATVIPY 51
Query: 138 YNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVA-EGDGFPNTVSDL 196
+ R+M ++PT+ LA A L+EV +W GLGYY RAR L + A+ + G FP T ++
Sbjct: 52 FERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEV 111
Query: 197 RKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQL 256
+PG+G TAGAI S++ + P++DGNV RVLAR A+S P W L+ Q+
Sbjct: 112 AALPGVGRSTAGAILSLSLGKHFPILDGNVQRVLARCYAVSGWPGKKEVENKLWSLSEQV 171
Query: 257 VDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQA 295
+ FNQ++M+LGA+ICT P C+ CP+ + C A
Sbjct: 172 TPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIA 210
>pdb|1KG6|A Chain A, Crystal Structure Of The K142r Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 12/219 (5%)
Query: 79 EVKKIRQSLLQWYDKNQRE-LPWXXXXXXXXXXXXXXXAYGVWVSEVMLQQTRVQTVIDY 137
+ + +L WYDK R+ LPW Y VW+SEVMLQQT+V TVI Y
Sbjct: 2 QASQFSAQVLDWYDKYGRKTLPWQIDKT----------PYKVWLSEVMLQQTQVATVIPY 51
Query: 138 YNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVA-EGDGFPNTVSDL 196
+ R+M ++PT+ LA A L+EV +W GLGYY RAR L + A+ + G FP T ++
Sbjct: 52 FERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEV 111
Query: 197 RKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQL 256
+PG+G TAGAI S++ + P++DGNV RVLAR A+S P W L+ Q+
Sbjct: 112 AALPGVGRSTAGAILSLSLGKHFPILDGNVRRVLARCYAVSGWPGKKEVENKLWSLSEQV 171
Query: 257 VDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQA 295
+ FNQ++M+LGA+ICT P C+ CP+ + C A
Sbjct: 172 TPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIA 210
>pdb|1WEF|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant
pdb|1WEI|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant
Complexed To Adenine
Length = 225
Score = 175 bits (444), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 126/219 (57%), Gaps = 12/219 (5%)
Query: 79 EVKKIRQSLLQWYDKNQRE-LPWXXXXXXXXXXXXXXXAYGVWVSEVMLQQTRVQTVIDY 137
+ + +L WYDK R LPW Y VW+SEVMLQQT+V TVI Y
Sbjct: 2 QASQFSAQVLDWYDKYGRATLPWQIDKT----------PYKVWLSEVMLQQTQVATVIPY 51
Query: 138 YNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVA-EGDGFPNTVSDL 196
+ R+M ++PT+ LA A L+EV +W GLGYY RAR L + A+ + G FP T ++
Sbjct: 52 FERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEV 111
Query: 197 RKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQL 256
+PG+G TAGAI S++ + P++DGNV RVLAR A+S P W L+ Q+
Sbjct: 112 AALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQV 171
Query: 257 VDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQA 295
+ FNQ++M+LGA+ICT P C+ CP+ + C A
Sbjct: 172 TPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIA 210
>pdb|1MUD|A Chain A, Catalytic Domain Of Muty From Escherichia Coli, D138n
Mutant Complexed To Adenine
pdb|1MUN|A Chain A, Catalytic Domain Of Muty From Escherichia Coli D138n
Mutant
Length = 225
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 127/219 (57%), Gaps = 12/219 (5%)
Query: 79 EVKKIRQSLLQWYDKNQRE-LPWXXXXXXXXXXXXXXXAYGVWVSEVMLQQTRVQTVIDY 137
+ + +L WYDK R+ LPW Y VW+SEVMLQQT+V TVI Y
Sbjct: 2 QASQFSAQVLDWYDKYGRKTLPWQIDKT----------PYKVWLSEVMLQQTQVATVIPY 51
Query: 138 YNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVA-EGDGFPNTVSDL 196
+ R+M ++PT+ LA A L+EV +W GLGYY RAR L + A+ + G FP T ++
Sbjct: 52 FERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEV 111
Query: 197 RKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQL 256
+PG+G TAGAI S++ + P+++GNV RVLAR A+S P W L+ Q+
Sbjct: 112 AALPGVGRSTAGAILSLSLGKHFPILNGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQV 171
Query: 257 VDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQA 295
+ FNQ++M+LGA+ICT P C+ CP+ + C A
Sbjct: 172 TPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIA 210
>pdb|1KQJ|A Chain A, Crystal Structure Of A Mutant Of Muty Catalytic Domain
Length = 225
Score = 171 bits (434), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 126/219 (57%), Gaps = 12/219 (5%)
Query: 79 EVKKIRQSLLQWYDKNQRE-LPWXXXXXXXXXXXXXXXAYGVWVSEVMLQQTRVQTVIDY 137
+ + +L WYDK R+ LPW Y VW+SEVMLQQT+V TVI Y
Sbjct: 2 QASQFSAQVLDWYDKYGRKTLPWQIDKT----------PYKVWLSEVMLQQTQVATVIPY 51
Query: 138 YNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVA-EGDGFPNTVSDL 196
+ R+M ++PT+ LA A L+EV +W GLGYY RAR L + A+ + G FP T ++
Sbjct: 52 FERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEV 111
Query: 197 RKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQL 256
+PG+G TAGAI S++ + P++DGNV RVLAR A+S P W L+ Q+
Sbjct: 112 AALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQV 171
Query: 257 VDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQA 295
+ FNQ++M+LGA+ICT P + CP+ + C A
Sbjct: 172 TPAVGVERFNQAMMDLGAMICTRSKPKHSLCPLQNGCIA 210
>pdb|1KEA|A Chain A, Structure Of A Thermostable Thymine-Dna Glycosylase
Length = 221
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 106/223 (47%), Gaps = 13/223 (5%)
Query: 76 SEKEVKKIRQSLLQWYDKNQRELPWXXXXXXXXXXXXXXXAYGVWVSEVMLQQTRVQTVI 135
+ K+ K ++L +++ ++R+ PW Y + ++E++L++T V
Sbjct: 5 TNKKRKVFVSTILTFWNTDRRDFPWRHTRD----------PYVILITEILLRRTTAGHVK 54
Query: 136 DYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYY-RRARFLLEGAKMIVAE-GDGFPNTV 193
Y+++ K+ + K E+ + +G +RA L E A++++ + G P
Sbjct: 55 KIYDKFFVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNR 114
Query: 194 SDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLA 253
+ +PG+G YT A+ +AF + +VD N +RV+ R S + + K W+LA
Sbjct: 115 KAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGGSYENLNYNH-KALWELA 173
Query: 254 TQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAY 296
LV + DFN LM+ A+IC P P C C +S C Y
Sbjct: 174 ETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYY 216
>pdb|1ORN|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Guanine Complex
pdb|1ORP|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Adenine Complex
Length = 226
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 8/190 (4%)
Query: 117 YGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR-RARFL 175
+ + ++ V+ Q V R K+ T H LEE+ + +G YR +AR +
Sbjct: 34 FELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNI 93
Query: 176 LEGAKMIVAEGDG-FPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLK 234
+ M++ + +G P +L K+PG+G TA + S+AF VD +V RV RL
Sbjct: 94 QKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLG 153
Query: 235 AISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQ 294
+ +V K +++ + ++ G C +P C SCP+ C+
Sbjct: 154 FCRWD----DSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCR 209
Query: 295 --AYSMSKRD 302
M KR+
Sbjct: 210 EGKKRMRKRE 219
>pdb|1P59|A Chain A, Structure Of A Non-Covalent Endonuclease Iii-Dna Complex
Length = 226
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 8/190 (4%)
Query: 117 YGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR-RARFL 175
+ + ++ V+ Q V R K+ T H LEE+ + +G YR +AR +
Sbjct: 34 FELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNI 93
Query: 176 LEGAKMIVAEGDG-FPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLK 234
+ M++ + +G P +L K+PG+G TA + S AF VD +V RV RL
Sbjct: 94 QKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSTAFGVPAIAVDTHVERVSKRLG 153
Query: 235 AISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQ 294
+ +V K +++ + ++ G C +P C SCP+ C+
Sbjct: 154 FCRWD----DSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCR 209
Query: 295 --AYSMSKRD 302
M KR+
Sbjct: 210 EGKKRMRKRE 219
>pdb|1X51|A Chain A, Solution Structure Of The Nudix Domain From Human AG-
Specific Adenine Dna Glycosylase Alpha-3 Splice Isoform
Length = 155
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 61/123 (49%), Gaps = 21/123 (17%)
Query: 308 TSYPMKVLKARQRHDVSAACVVEILGGNDESERTQPDGV---FILVKRRDEGLLAGLWEF 364
+S P K + R + SA CV+E QP + +LV+R + GLLAGLWEF
Sbjct: 5 SSGPRKASRKPPREESSATCVLE-----------QPGALGAQILLVQRPNSGLLAGLWEF 53
Query: 365 PSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVEL 424
PS+ + + +R+A L++ P + LR +GE VH FSHI+L V
Sbjct: 54 PSVTWEPSEQL--QRKALLQELQRWAGPLPATH----LRH-LGEVVHTFSHIKLTYQVYG 106
Query: 425 LVL 427
L L
Sbjct: 107 LAL 109
>pdb|2ABK|A Chain A, Refinement Of The Native Structure Of Endonuclease Iii To
A Resolution Of 1.85 Angstrom
Length = 211
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 14/132 (10%)
Query: 168 YYRRARFLLEGAKMIVAEGDG-FPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNV 226
Y +A +++ ++++ + +G P + L +PG+G TA + + AF VD ++
Sbjct: 82 YNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHI 141
Query: 227 IRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDF----NQSLMELGAVICTPLNP 282
RV R + KN ++ +L+ P +F + L+ G C P
Sbjct: 142 FRVCNRTQFAPG--------KNVEQVEEKLLKVV-PAEFKVDCHHWLILHGRYTCIARKP 192
Query: 283 NCTSCPVSDKCQ 294
C SC + D C+
Sbjct: 193 RCGSCIIEDLCE 204
>pdb|3N0U|A Chain A, Crystal Structure Of Tm1821, The 8-Oxoguanine Dna
Glycosylase Of Thermotoga Maritima
pdb|3N0U|B Chain B, Crystal Structure Of Tm1821, The 8-Oxoguanine Dna
Glycosylase Of Thermotoga Maritima
pdb|3N0U|C Chain C, Crystal Structure Of Tm1821, The 8-Oxoguanine Dna
Glycosylase Of Thermotoga Maritima
Length = 219
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 16/128 (12%)
Query: 156 LEEVNEMWAGLGY---YRRARFLLEGAKMI-----VAEGDGFPNTVSDLRKVPGIGNYTA 207
LEE+ E +G+ +RA F++E K++ + +GD F + +R GIG A
Sbjct: 84 LEELAEKLREVGHRYPQKRAEFIVENRKLLGKLKNLVKGDPFQSREFLVRNAKGIGWKEA 143
Query: 208 GAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFW------KLATQLVDSCR 261
E + ++D +V+R++ R I PK S + + K+A +S
Sbjct: 144 SHFLRNTGVEDLAILDKHVLRLMKRHGLIQEIPKGWSKKRYLYVEEILRKVAEAFGES-- 201
Query: 262 PGDFNQSL 269
PG F+ L
Sbjct: 202 PGKFDLYL 209
>pdb|1E3X|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.92a
pdb|1E3Z|A Chain A, Acarbose Complex Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.93a
pdb|1E40|A Chain A, TrisMALTOTRIOSE COMPLEX OF CHIMAERIC AMYLASE FROM B.
Amyloliquefaciens And B. Licheniformis At 2.2a
pdb|1E43|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.7a
Length = 483
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 238 ANPKDTSTVKNFWKL-ATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAY 296
A K+ TV +W+ A +L + FNQS+ ++ PL+ N + S + Y
Sbjct: 251 ATGKEMFTVAEYWQNNAGKLENYLNKTSFNQSVFDV------PLHFNLQAA--SSQGGGY 302
Query: 297 SMSKRDNSVLVTSYPMKVLKARQRHDVSAACVVE 330
M K N +V+ +P+K + HD +E
Sbjct: 303 DMRKLLNGTVVSKHPLKSVTFVDNHDTQPGQSLE 336
>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
pdb|3R03|B Chain B, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
Length = 144
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 343 PDGVFILVKRRDEGLLAGLWEFPSIILD-GET-DITTRREAAECFLKKSFNLDPRNNC 398
PDG +L +R LAGLWEFP L+ GET + RE AE +D R +C
Sbjct: 18 PDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAE-----ELGVDTRASC 70
>pdb|2DD5|C Chain C, Thiocyanate Hydrolase (Scnase) From Thiobacillus Thioparus
Native Holo-Enzyme
pdb|2DD5|F Chain F, Thiocyanate Hydrolase (Scnase) From Thiobacillus Thioparus
Native Holo-Enzyme
pdb|2DD5|I Chain I, Thiocyanate Hydrolase (Scnase) From Thiobacillus Thioparus
Native Holo-Enzyme
pdb|2DD5|L Chain L, Thiocyanate Hydrolase (Scnase) From Thiobacillus Thioparus
Native Holo-Enzyme
pdb|2DXB|C Chain C, Recombinant Thiocyanate Hydrolase Comprising
Partially-Modified Cobalt Centers
pdb|2DXB|F Chain F, Recombinant Thiocyanate Hydrolase Comprising
Partially-Modified Cobalt Centers
pdb|2DXB|I Chain I, Recombinant Thiocyanate Hydrolase Comprising
Partially-Modified Cobalt Centers
pdb|2DXB|L Chain L, Recombinant Thiocyanate Hydrolase Comprising
Partially-Modified Cobalt Centers
pdb|2DXB|O Chain O, Recombinant Thiocyanate Hydrolase Comprising
Partially-Modified Cobalt Centers
pdb|2DXB|R Chain R, Recombinant Thiocyanate Hydrolase Comprising
Partially-Modified Cobalt Centers
pdb|2DXB|U Chain U, Recombinant Thiocyanate Hydrolase Comprising
Partially-Modified Cobalt Centers
pdb|2DXB|X Chain X, Recombinant Thiocyanate Hydrolase Comprising
Partially-Modified Cobalt Centers
pdb|2DXC|C Chain C, Recombinant Thiocyanate Hydrolase, Fully-Matured Form
pdb|2DXC|F Chain F, Recombinant Thiocyanate Hydrolase, Fully-Matured Form
pdb|2DXC|I Chain I, Recombinant Thiocyanate Hydrolase, Fully-Matured Form
pdb|2DXC|L Chain L, Recombinant Thiocyanate Hydrolase, Fully-Matured Form
pdb|2ZZD|C Chain C, Recombinant Thiocyanate Hydrolase, Air-Oxidized Form Of
Holo-Enzyme
pdb|2ZZD|F Chain F, Recombinant Thiocyanate Hydrolase, Air-Oxidized Form Of
Holo-Enzyme
pdb|2ZZD|I Chain I, Recombinant Thiocyanate Hydrolase, Air-Oxidized Form Of
Holo-Enzyme
pdb|2ZZD|L Chain L, Recombinant Thiocyanate Hydrolase, Air-Oxidized Form Of
Holo-Enzyme
Length = 243
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 403 REDVGEF-VHIFSHIRLKV-----HVELLVLCIKG-GIDKWVEKQDKGTLSWKCVDGGTL 455
R+ + EF + + S ++++V +V+ ++ G D W E Q ++ C+ G +
Sbjct: 160 RQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAV 219
Query: 456 ASMGLTSGVRKVMMGKSPPISHD 478
G+T ++ ++ + P+ HD
Sbjct: 220 PKPGITVNAKRPVLKANRPVHHD 242
>pdb|2DD4|C Chain C, Thiocyanate Hydrolase (Scnase) From Thiobacillus Thioparus
Recombinant Apo-Enzyme
pdb|2DD4|F Chain F, Thiocyanate Hydrolase (Scnase) From Thiobacillus Thioparus
Recombinant Apo-Enzyme
pdb|2DD4|I Chain I, Thiocyanate Hydrolase (Scnase) From Thiobacillus Thioparus
Recombinant Apo-Enzyme
pdb|2DD4|L Chain L, Thiocyanate Hydrolase (Scnase) From Thiobacillus Thioparus
Recombinant Apo-Enzyme
Length = 243
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 403 REDVGEF-VHIFSHIRLKV-----HVELLVLCIKG-GIDKWVEKQDKGTLSWKCVDGGTL 455
R+ + EF + + S ++++V +V+ ++ G D W E Q ++ C+ G +
Sbjct: 160 RQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAV 219
Query: 456 ASMGLTSGVRKVMMGKSPPISHD 478
G+T ++ ++ + P+ HD
Sbjct: 220 PKPGITVNAKRPVLKANRPVHHD 242
>pdb|3D3Q|A Chain A, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
pdb|3D3Q|B Chain B, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
Length = 340
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 130 RVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGF 189
RV I+YY + K + + E + + G+ R +L ++ + G G
Sbjct: 168 RVLRAIEYYLK-TKKLLSSRKKVQQFTENYDTLLIGIEXSRETLYLRINKRVDIXLGHGL 226
Query: 190 PNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNV 226
N V L + G + + +I +KE+VPV+ GN+
Sbjct: 227 FNEVQHLVEQ---GFEASQSXQAIGYKELVPVIKGNI 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,080,691
Number of Sequences: 62578
Number of extensions: 499984
Number of successful extensions: 1238
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1189
Number of HSP's gapped (non-prelim): 25
length of query: 482
length of database: 14,973,337
effective HSP length: 103
effective length of query: 379
effective length of database: 8,527,803
effective search space: 3232037337
effective search space used: 3232037337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)