Query 011579
Match_columns 482
No_of_seqs 334 out of 2616
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 02:56:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10880 adenine DNA glycosyla 100.0 7.1E-76 1.5E-80 599.7 33.8 341 81-473 4-346 (350)
2 COG1194 MutY A/G-specific DNA 100.0 2.4E-73 5.2E-78 569.3 27.9 333 79-472 7-341 (342)
3 TIGR01084 mutY A/G-specific ad 100.0 2.3E-66 5E-71 515.7 28.7 259 83-368 2-262 (275)
4 KOG2457 A/G-specific adenine D 100.0 2.6E-65 5.7E-70 507.1 18.1 372 69-459 79-492 (555)
5 PRK13910 DNA glycosylase MutY; 100.0 1.7E-62 3.7E-67 489.6 27.3 282 125-474 1-284 (289)
6 COG0177 Nth Predicted EndoIII- 100.0 3.3E-49 7.1E-54 374.7 20.1 204 77-298 3-208 (211)
7 PRK10702 endonuclease III; Pro 100.0 5E-47 1.1E-51 364.1 21.6 202 78-297 4-207 (211)
8 TIGR01083 nth endonuclease III 100.0 2.5E-40 5.5E-45 313.9 20.4 187 80-284 3-191 (191)
9 PRK13913 3-methyladenine DNA g 100.0 6.1E-34 1.3E-38 273.5 20.3 182 82-279 6-216 (218)
10 KOG1921 Endonuclease III [Repl 100.0 2.9E-34 6.3E-39 271.9 14.2 210 78-297 46-261 (286)
11 COG2231 Uncharacterized protei 100.0 4.3E-30 9.4E-35 239.2 16.2 200 78-297 6-214 (215)
12 smart00478 ENDO3c endonuclease 100.0 1.3E-28 2.8E-33 224.2 14.1 146 125-274 1-148 (149)
13 cd00056 ENDO3c endonuclease II 100.0 6.3E-28 1.4E-32 221.7 15.8 153 117-273 1-158 (158)
14 PRK01229 N-glycosylase/DNA lya 99.9 2.8E-24 6.1E-29 205.1 15.9 121 113-239 34-164 (208)
15 TIGR00588 ogg 8-oxoguanine DNA 99.9 5.9E-24 1.3E-28 215.8 16.0 154 114-272 117-302 (310)
16 PF14815 NUDIX_4: NUDIX domain 99.8 3.8E-21 8.3E-26 167.2 9.8 109 342-469 6-114 (114)
17 TIGR00586 mutt mutator mutT pr 99.8 1.3E-20 2.9E-25 165.6 12.8 115 342-472 13-127 (128)
18 TIGR03252 uncharacterized HhH- 99.8 1.4E-20 3E-25 174.5 12.5 103 113-215 15-136 (177)
19 cd03431 DNA_Glycosylase_C DNA 99.8 1.7E-20 3.7E-25 162.0 12.3 108 342-471 11-118 (118)
20 PRK10546 pyrimidine (deoxy)nuc 99.8 5.7E-20 1.2E-24 163.6 12.5 116 342-473 12-127 (135)
21 PRK10776 nucleoside triphospha 99.8 8E-20 1.7E-24 160.3 12.7 114 342-471 13-126 (129)
22 COG0122 AlkA 3-methyladenine D 99.8 7.5E-19 1.6E-23 176.2 12.8 136 113-256 102-258 (285)
23 PRK10308 3-methyl-adenine DNA 99.8 8.7E-19 1.9E-23 175.8 12.7 140 114-268 111-272 (283)
24 PRK08999 hypothetical protein; 99.7 1.8E-17 3.9E-22 168.5 13.5 118 342-475 14-131 (312)
25 cd03425 MutT_pyrophosphohydrol 99.7 2.4E-17 5.1E-22 142.8 12.2 115 342-472 10-124 (124)
26 KOG2875 8-oxoguanine DNA glyco 99.7 5.4E-17 1.2E-21 157.4 9.4 121 110-233 111-258 (323)
27 PF00730 HhH-GPD: HhH-GPD supe 99.7 1.1E-16 2.3E-21 137.9 10.1 91 121-241 1-94 (108)
28 KOG1918 3-methyladenine DNA gl 99.6 5.7E-15 1.2E-19 139.0 10.7 123 113-241 72-214 (254)
29 PRK15472 nucleoside triphospha 99.5 4.4E-14 9.5E-19 127.1 11.4 119 342-470 12-137 (141)
30 cd04676 Nudix_Hydrolase_17 Mem 99.5 1.7E-13 3.7E-18 119.7 11.1 109 342-469 11-128 (129)
31 PRK15434 GDP-mannose mannosyl 99.5 2.3E-13 4.9E-18 125.7 12.0 116 342-470 26-150 (159)
32 cd04669 Nudix_Hydrolase_11 Mem 99.5 3.1E-13 6.8E-18 118.7 9.8 105 342-462 9-118 (121)
33 cd03427 MTH1 MutT homolog-1 (M 99.4 5.1E-13 1.1E-17 119.0 10.4 117 343-475 10-128 (137)
34 cd04696 Nudix_Hydrolase_37 Mem 99.4 1.2E-12 2.7E-17 115.1 11.5 110 342-469 11-125 (125)
35 cd04684 Nudix_Hydrolase_25 Con 99.4 1.7E-12 3.7E-17 113.7 11.1 112 344-468 10-127 (128)
36 cd04673 Nudix_Hydrolase_15 Mem 99.4 1.7E-12 3.7E-17 112.9 9.1 106 344-465 10-121 (122)
37 cd04691 Nudix_Hydrolase_32 Mem 99.4 2.5E-12 5.4E-17 112.3 9.5 98 344-458 10-108 (117)
38 cd04699 Nudix_Hydrolase_39 Mem 99.4 2.7E-12 6E-17 112.5 9.7 105 342-461 10-117 (129)
39 cd04682 Nudix_Hydrolase_23 Mem 99.4 2.6E-12 5.7E-17 112.6 9.0 106 343-461 10-117 (122)
40 cd03430 GDPMH GDP-mannose glyc 99.3 7.3E-12 1.6E-16 113.6 11.8 103 342-459 21-133 (144)
41 cd04695 Nudix_Hydrolase_36 Mem 99.3 4.3E-12 9.3E-17 112.8 9.9 114 342-471 11-127 (131)
42 cd04679 Nudix_Hydrolase_20 Mem 99.3 1.1E-11 2.5E-16 108.8 11.9 112 342-468 11-124 (125)
43 cd04681 Nudix_Hydrolase_22 Mem 99.3 6.4E-12 1.4E-16 110.9 9.9 113 342-470 10-128 (130)
44 cd02883 Nudix_Hydrolase Nudix 99.3 7E-12 1.5E-16 107.4 9.7 114 342-468 9-122 (123)
45 cd04664 Nudix_Hydrolase_7 Memb 99.3 5E-12 1.1E-16 111.7 8.9 109 344-468 14-128 (129)
46 cd03673 Ap6A_hydrolase Diadeno 99.3 8E-12 1.7E-16 109.8 9.9 111 344-471 15-129 (131)
47 cd04678 Nudix_Hydrolase_19 Mem 99.3 2.2E-11 4.8E-16 107.5 12.6 106 342-459 11-118 (129)
48 PLN02325 nudix hydrolase 99.3 2.2E-11 4.7E-16 110.6 12.7 122 343-477 18-143 (144)
49 cd04683 Nudix_Hydrolase_24 Mem 99.3 1.7E-11 3.6E-16 106.8 10.8 105 343-458 9-114 (120)
50 PRK09438 nudB dihydroneopterin 99.3 5.5E-12 1.2E-16 114.4 8.1 117 342-471 16-142 (148)
51 cd04670 Nudix_Hydrolase_12 Mem 99.3 1.3E-11 2.9E-16 108.6 10.2 112 342-468 11-123 (127)
52 cd03426 CoAse Coenzyme A pyrop 99.3 6.2E-12 1.3E-16 115.7 8.0 105 344-461 15-121 (157)
53 cd04667 Nudix_Hydrolase_10 Mem 99.3 1.7E-11 3.7E-16 105.9 9.6 104 342-468 8-111 (112)
54 cd04687 Nudix_Hydrolase_28 Mem 99.3 2E-11 4.3E-16 107.8 10.2 108 343-463 10-126 (128)
55 cd04671 Nudix_Hydrolase_13 Mem 99.3 3.4E-11 7.3E-16 106.4 10.9 108 342-465 9-116 (123)
56 cd04688 Nudix_Hydrolase_29 Mem 99.3 2.7E-11 5.9E-16 106.6 9.8 106 344-464 11-124 (126)
57 cd03675 Nudix_Hydrolase_2 Cont 99.3 3.9E-11 8.4E-16 106.6 10.7 117 342-473 8-129 (134)
58 cd04661 MRP_L46 Mitochondrial 99.2 1.6E-11 3.6E-16 109.6 8.0 104 342-458 10-120 (132)
59 cd04690 Nudix_Hydrolase_31 Mem 99.2 2.7E-11 5.9E-16 105.0 9.1 106 342-465 9-117 (118)
60 cd04680 Nudix_Hydrolase_21 Mem 99.2 4.7E-11 1E-15 103.6 10.3 110 342-469 9-118 (120)
61 cd04511 Nudix_Hydrolase_4 Memb 99.2 5.5E-11 1.2E-15 105.5 10.2 102 343-462 22-125 (130)
62 cd03671 Ap4A_hydrolase_plant_l 99.2 5.2E-11 1.1E-15 108.1 10.0 116 342-471 12-143 (147)
63 PRK15393 NUDIX hydrolase YfcD; 99.2 6.3E-11 1.4E-15 111.6 10.6 114 342-470 46-163 (180)
64 cd04697 Nudix_Hydrolase_38 Mem 99.2 5.9E-11 1.3E-15 104.8 9.2 102 342-458 9-112 (126)
65 cd04700 DR1025_like DR1025 fro 99.2 9.2E-11 2E-15 106.1 10.5 104 342-459 22-126 (142)
66 cd03674 Nudix_Hydrolase_1 Memb 99.2 1.9E-10 4.2E-15 103.2 12.1 112 342-471 11-136 (138)
67 cd04689 Nudix_Hydrolase_30 Mem 99.2 1.6E-10 3.4E-15 101.6 11.0 111 343-470 10-124 (125)
68 cd04694 Nudix_Hydrolase_35 Mem 99.2 9.4E-11 2E-15 106.4 8.7 109 342-457 10-130 (143)
69 PF00293 NUDIX: NUDIX domain; 99.1 7.9E-11 1.7E-15 103.3 7.0 118 342-471 11-132 (134)
70 cd03424 ADPRase_NUDT5 ADP-ribo 99.1 1.6E-10 3.4E-15 103.1 8.9 105 342-458 11-115 (137)
71 cd04672 Nudix_Hydrolase_14 Mem 99.1 3.4E-10 7.3E-15 99.3 10.0 103 344-465 12-119 (123)
72 TIGR02150 IPP_isom_1 isopenten 99.1 2E-10 4.2E-15 105.9 8.8 102 342-458 36-142 (158)
73 cd04693 Nudix_Hydrolase_34 Mem 99.1 1.9E-10 4.1E-15 101.4 7.9 102 342-457 9-112 (127)
74 cd03428 Ap4A_hydrolase_human_l 99.1 5.1E-10 1.1E-14 98.7 9.9 108 344-470 16-127 (130)
75 cd02885 IPP_Isomerase Isopente 99.0 7.4E-10 1.6E-14 102.7 9.4 102 342-458 39-148 (165)
76 cd04692 Nudix_Hydrolase_33 Mem 99.0 5.4E-10 1.2E-14 101.0 8.2 104 344-457 16-126 (144)
77 cd04677 Nudix_Hydrolase_18 Mem 99.0 8.9E-10 1.9E-14 97.2 9.4 108 342-468 16-131 (132)
78 cd03429 NADH_pyrophosphatase N 99.0 6.1E-10 1.3E-14 99.3 7.5 109 342-468 9-121 (131)
79 cd03672 Dcp2p mRNA decapping e 99.0 1E-09 2.2E-14 99.8 9.0 99 344-459 13-112 (145)
80 cd04666 Nudix_Hydrolase_9 Memb 99.0 2E-09 4.4E-14 95.0 9.6 95 344-456 14-113 (122)
81 cd04686 Nudix_Hydrolase_27 Mem 99.0 1.9E-09 4.2E-14 96.0 9.2 101 343-457 9-118 (131)
82 cd04674 Nudix_Hydrolase_16 Mem 99.0 8.3E-09 1.8E-13 90.8 11.8 97 346-456 16-113 (118)
83 PRK00714 RNA pyrophosphohydrol 99.0 2.2E-09 4.8E-14 98.7 8.6 115 342-469 17-145 (156)
84 cd04685 Nudix_Hydrolase_26 Mem 98.9 4.6E-09 9.9E-14 94.2 8.7 107 342-458 9-123 (133)
85 PRK03759 isopentenyl-diphospha 98.9 8.1E-09 1.8E-13 97.5 9.7 114 342-469 43-169 (184)
86 PRK05379 bifunctional nicotina 98.9 1.2E-08 2.6E-13 105.4 11.1 116 343-471 212-337 (340)
87 PRK00241 nudC NADH pyrophospha 98.8 1.4E-08 3E-13 100.9 10.2 102 343-462 141-242 (256)
88 PRK11762 nudE adenosine nucleo 98.8 9.3E-09 2E-13 97.2 8.0 102 342-456 56-157 (185)
89 PRK10707 putative NUDIX hydrol 98.7 5.1E-08 1.1E-12 92.8 10.0 103 343-458 42-146 (190)
90 COG1051 ADP-ribose pyrophospha 98.7 7.8E-08 1.7E-12 87.6 9.4 105 343-462 19-126 (145)
91 cd04663 Nudix_Hydrolase_6 Memb 98.7 1.9E-07 4.1E-12 83.1 10.5 95 345-458 14-116 (126)
92 COG1059 Thermostable 8-oxoguan 98.6 1.9E-07 4.1E-12 86.8 10.2 121 114-241 37-168 (210)
93 cd03676 Nudix_hydrolase_3 Memb 98.6 2.8E-07 6E-12 86.6 9.8 104 344-457 47-157 (180)
94 cd04662 Nudix_Hydrolase_5 Memb 98.6 5.3E-07 1.2E-11 80.1 10.6 49 344-395 14-65 (126)
95 cd04665 Nudix_Hydrolase_8 Memb 98.6 6.1E-07 1.3E-11 78.9 10.7 94 343-455 9-102 (118)
96 PLN02709 nudix hydrolase 98.5 4.9E-07 1.1E-11 87.7 8.6 104 344-457 50-154 (222)
97 PF00633 HHH: Helix-hairpin-he 98.4 1.3E-07 2.8E-12 62.9 1.0 27 187-213 4-30 (30)
98 TIGR00052 nudix-type nucleosid 98.3 1.2E-06 2.6E-11 83.0 7.0 104 343-457 55-164 (185)
99 TIGR02705 nudix_YtkD nucleosid 98.3 3E-06 6.4E-11 78.1 9.1 70 344-427 34-103 (156)
100 COG0494 MutT NTP pyrophosphohy 98.3 4.9E-06 1.1E-10 72.5 9.0 45 345-395 24-69 (161)
101 PLN02552 isopentenyl-diphospha 98.2 5.7E-06 1.2E-10 81.7 9.9 124 342-471 65-223 (247)
102 PLN02791 Nudix hydrolase homol 98.1 1.6E-05 3.6E-10 89.4 10.4 104 344-456 44-156 (770)
103 PRK10729 nudF ADP-ribose pyrop 98.1 1.5E-05 3.4E-10 76.5 8.8 105 344-457 61-170 (202)
104 cd03670 ADPRase_NUDT9 ADP-ribo 97.9 7.2E-05 1.6E-09 70.9 10.0 43 345-394 49-91 (186)
105 PF10576 EndIII_4Fe-2S: Iron-s 97.6 1.7E-05 3.6E-10 45.8 0.3 17 277-293 1-17 (17)
106 KOG3069 Peroxisomal NUDIX hydr 97.4 0.0004 8.6E-09 67.2 6.8 106 343-457 56-162 (246)
107 PRK15009 GDP-mannose pyrophosp 97.3 0.0013 2.8E-08 62.8 8.9 101 344-457 57-165 (191)
108 COG2816 NPY1 NTP pyrophosphohy 96.9 0.00063 1.4E-08 67.9 3.1 99 344-460 154-253 (279)
109 smart00525 FES FES domain. iro 96.9 0.0004 8.6E-09 44.5 1.0 22 276-297 1-22 (26)
110 PLN03143 nudix hydrolase; Prov 96.9 0.0018 3.8E-08 65.6 6.0 47 346-395 144-191 (291)
111 COG1443 Idi Isopentenyldiphosp 96.2 0.0093 2E-07 55.4 5.5 107 342-471 42-172 (185)
112 KOG3084 NADH pyrophosphatase I 96.1 0.0091 2E-07 60.2 5.6 51 342-396 196-246 (345)
113 KOG3041 Nucleoside diphosphate 95.5 0.056 1.2E-06 51.2 7.8 71 346-426 89-162 (225)
114 KOG2839 Diadenosine and diphos 95.3 0.042 9.1E-07 49.7 6.0 44 346-395 25-68 (145)
115 smart00278 HhH1 Helix-hairpin- 94.6 0.027 5.9E-07 36.0 2.2 21 194-214 1-21 (26)
116 PF14716 HHH_8: Helix-hairpin- 94.0 0.17 3.6E-06 40.0 5.9 55 158-213 10-66 (68)
117 KOG0648 Predicted NUDIX hydrol 93.6 0.036 7.8E-07 55.8 1.9 113 342-468 124-243 (295)
118 PLN02839 nudix hydrolase 92.4 0.55 1.2E-05 49.0 8.5 104 343-456 216-325 (372)
119 PF09674 DUF2400: Protein of u 92.3 0.11 2.5E-06 51.0 3.1 55 219-274 176-230 (232)
120 TIGR02757 conserved hypothetic 92.1 0.12 2.6E-06 50.6 3.1 55 219-274 173-227 (229)
121 PF12826 HHH_2: Helix-hairpin- 91.6 0.17 3.7E-06 39.5 2.9 25 190-214 31-55 (64)
122 TIGR00426 competence protein C 90.4 0.62 1.3E-05 36.6 5.1 58 150-213 9-66 (69)
123 KOG4195 Transient receptor pot 89.7 0.39 8.4E-06 46.4 4.0 38 346-390 140-177 (275)
124 PF14520 HHH_5: Helix-hairpin- 89.1 0.99 2.2E-05 34.5 5.2 22 192-213 36-57 (60)
125 COG4119 Predicted NTP pyrophos 88.8 1.3 2.7E-05 39.4 6.1 46 346-395 19-68 (161)
126 KOG4548 Mitochondrial ribosoma 88.5 0.99 2.1E-05 44.5 5.9 104 344-459 138-248 (263)
127 PF05559 DUF763: Protein of un 83.4 3.8 8.2E-05 42.0 7.3 61 173-238 251-314 (319)
128 COG4112 Predicted phosphoester 83.2 6.7 0.00015 36.3 8.1 110 343-460 70-190 (203)
129 TIGR00624 tag DNA-3-methyladen 82.4 8 0.00017 36.6 8.6 71 114-184 28-103 (179)
130 PRK10353 3-methyl-adenine DNA 82.0 7.9 0.00017 36.9 8.5 71 114-184 29-104 (187)
131 PF12836 HHH_3: Helix-hairpin- 81.1 1.3 2.9E-05 34.5 2.5 24 191-214 11-34 (65)
132 PF03352 Adenine_glyco: Methyl 80.8 5.3 0.00011 37.8 6.8 71 114-184 24-99 (179)
133 PRK14601 ruvA Holliday junctio 80.5 1.2 2.6E-05 42.2 2.4 27 191-217 105-131 (183)
134 PF14520 HHH_5: Helix-hairpin- 80.2 1.4 3E-05 33.7 2.3 34 193-226 4-37 (60)
135 PF11731 Cdd1: Pathogenicity l 79.5 1.4 3.1E-05 37.2 2.3 28 192-219 10-37 (93)
136 PRK13901 ruvA Holliday junctio 79.2 1.4 3E-05 42.3 2.4 27 191-217 104-130 (196)
137 TIGR01259 comE comEA protein. 78.7 2.8 6.1E-05 36.9 4.0 61 146-213 57-117 (120)
138 COG1555 ComEA DNA uptake prote 78.6 1.5 3.3E-05 40.1 2.4 24 191-214 94-117 (149)
139 PRK14606 ruvA Holliday junctio 78.6 1.5 3.3E-05 41.8 2.4 27 191-217 105-131 (188)
140 TIGR00615 recR recombination p 78.1 1.6 3.5E-05 41.8 2.4 28 191-218 8-35 (195)
141 COG0632 RuvA Holliday junction 78.0 1.5 3.3E-05 42.1 2.3 27 191-217 105-131 (201)
142 PRK00076 recR recombination pr 77.8 1.6 3.5E-05 41.8 2.4 28 191-218 8-35 (196)
143 PRK07945 hypothetical protein; 77.7 2.8 6.1E-05 43.4 4.4 58 157-214 8-69 (335)
144 PRK14602 ruvA Holliday junctio 77.6 1.7 3.6E-05 41.9 2.5 26 191-216 106-131 (203)
145 PRK14603 ruvA Holliday junctio 77.3 1.7 3.7E-05 41.7 2.5 26 191-216 104-129 (197)
146 PRK14604 ruvA Holliday junctio 76.9 1.8 3.9E-05 41.5 2.4 27 191-217 105-131 (195)
147 COG2818 Tag 3-methyladenine DN 76.7 15 0.00033 34.8 8.5 70 115-184 31-105 (188)
148 PRK13844 recombination protein 76.7 1.8 3.9E-05 41.6 2.4 28 191-218 12-39 (200)
149 COG0353 RecR Recombinational D 76.4 1.8 3.9E-05 41.3 2.3 27 191-217 9-35 (198)
150 KOG0142 Isopentenyl pyrophosph 75.9 2.6 5.5E-05 40.4 3.1 119 342-468 61-199 (225)
151 TIGR00608 radc DNA repair prot 75.8 2.8 6.1E-05 40.8 3.5 63 153-217 13-84 (218)
152 PRK02515 psbU photosystem II c 75.3 3.7 8E-05 36.8 3.8 57 144-212 48-105 (132)
153 PRK00116 ruvA Holliday junctio 74.9 4.9 0.00011 38.3 4.9 24 191-214 105-128 (192)
154 COG1796 POL4 DNA polymerase IV 74.8 4.1 8.9E-05 41.7 4.5 57 158-214 14-73 (326)
155 TIGR01259 comE comEA protein. 74.7 2.4 5.2E-05 37.4 2.5 24 191-214 65-88 (120)
156 PRK00024 hypothetical protein; 74.4 3.2 7E-05 40.6 3.5 57 153-211 23-83 (224)
157 PF12836 HHH_3: Helix-hairpin- 73.8 5.3 0.00011 31.0 4.0 52 151-211 8-61 (65)
158 PRK14600 ruvA Holliday junctio 73.6 2.3 4.9E-05 40.5 2.2 26 191-217 105-130 (186)
159 PRK00116 ruvA Holliday junctio 73.1 4.5 9.7E-05 38.6 4.1 41 194-236 73-116 (192)
160 PRK14605 ruvA Holliday junctio 72.9 2.5 5.5E-05 40.4 2.4 22 191-212 105-126 (194)
161 smart00483 POLXc DNA polymeras 72.7 9.1 0.0002 39.7 6.6 54 159-213 13-67 (334)
162 TIGR00084 ruvA Holliday juncti 71.7 2.9 6.3E-05 39.9 2.4 23 191-213 104-126 (191)
163 PRK14605 ruvA Holliday junctio 71.1 4.5 9.7E-05 38.7 3.6 43 193-237 72-117 (194)
164 PF11798 IMS_HHH: IMS family H 70.7 3 6.4E-05 28.0 1.6 17 195-211 12-28 (32)
165 cd00141 NT_POLXc Nucleotidyltr 69.1 11 0.00023 38.7 6.1 23 189-211 80-102 (307)
166 PRK00024 hypothetical protein; 68.5 12 0.00026 36.6 6.1 65 119-184 28-94 (224)
167 PF02371 Transposase_20: Trans 68.4 4.1 9E-05 33.5 2.4 22 194-215 2-23 (87)
168 PRK02515 psbU photosystem II c 65.4 4.6 9.9E-05 36.2 2.2 22 191-212 58-79 (132)
169 TIGR00608 radc DNA repair prot 64.4 17 0.00036 35.5 6.1 65 119-184 18-88 (218)
170 KOG2457 A/G-specific adenine D 63.9 0.38 8.2E-06 50.0 -5.6 167 260-433 252-441 (555)
171 TIGR00084 ruvA Holliday juncti 63.7 4.9 0.00011 38.4 2.2 21 193-213 71-91 (191)
172 PRK14973 DNA topoisomerase I; 63.4 29 0.00062 41.1 8.8 88 144-234 822-917 (936)
173 smart00279 HhH2 Helix-hairpin- 62.4 5.5 0.00012 27.5 1.7 17 196-212 18-34 (36)
174 PRK08609 hypothetical protein; 61.1 13 0.00027 41.6 5.2 25 187-211 81-105 (570)
175 PRK14602 ruvA Holliday junctio 60.1 9.9 0.00021 36.6 3.7 45 193-237 73-118 (203)
176 PRK13901 ruvA Holliday junctio 59.3 11 0.00024 36.2 3.7 45 193-237 71-116 (196)
177 PRK13482 DNA integrity scannin 59.1 21 0.00045 37.3 6.0 48 136-185 298-345 (352)
178 PF04904 NCD1: NAB conserved r 59.1 28 0.0006 28.4 5.3 52 132-183 19-74 (82)
179 TIGR00426 competence protein C 59.0 8.5 0.00018 30.1 2.5 22 192-213 14-36 (69)
180 PF13869 NUDIX_2: Nucleotide h 58.7 27 0.00059 33.3 6.2 42 345-394 58-99 (188)
181 PF10391 DNA_pol_lambd_f: Fing 58.1 8.6 0.00019 28.9 2.2 23 194-216 2-24 (52)
182 PRK14601 ruvA Holliday junctio 57.7 12 0.00027 35.4 3.8 45 193-237 72-117 (183)
183 PRK14603 ruvA Holliday junctio 57.7 11 0.00025 36.0 3.6 45 193-237 71-116 (197)
184 COG2003 RadC DNA repair protei 57.3 26 0.00057 34.3 6.0 67 118-185 27-95 (224)
185 PRK14606 ruvA Holliday junctio 57.1 11 0.00025 35.8 3.4 45 193-237 72-117 (188)
186 COG2003 RadC DNA repair protei 56.7 16 0.00035 35.7 4.5 55 154-210 24-82 (224)
187 PF14229 DUF4332: Domain of un 56.4 24 0.00052 31.1 5.2 77 145-235 16-94 (122)
188 cd00080 HhH2_motif Helix-hairp 53.5 9.5 0.00021 30.6 2.0 19 195-213 23-41 (75)
189 COG1555 ComEA DNA uptake prote 52.9 23 0.00051 32.4 4.7 55 151-212 91-145 (149)
190 COG0272 Lig NAD-dependent DNA 52.2 13 0.00029 41.8 3.4 56 158-213 506-562 (667)
191 KOG2841 Structure-specific end 51.8 19 0.00041 35.5 4.0 40 139-181 209-249 (254)
192 PRK14350 ligA NAD-dependent DN 50.5 22 0.00048 40.4 4.9 23 192-214 539-561 (669)
193 PRK14670 uvrC excinuclease ABC 49.7 26 0.00057 39.1 5.3 77 123-214 487-566 (574)
194 KOG2534 DNA polymerase IV (fam 49.5 29 0.00064 35.7 5.1 65 171-237 34-106 (353)
195 COG1415 Uncharacterized conser 49.2 12 0.00027 38.7 2.4 67 190-258 274-345 (373)
196 cd00141 NT_POLXc Nucleotidyltr 48.6 16 0.00034 37.4 3.2 59 158-217 9-69 (307)
197 PRK12766 50S ribosomal protein 47.5 12 0.00027 36.7 2.0 24 194-217 3-26 (232)
198 smart00483 POLXc DNA polymeras 46.8 13 0.00028 38.6 2.2 31 186-218 81-111 (334)
199 TIGR00575 dnlj DNA ligase, NAD 46.6 11 0.00025 42.6 1.9 67 139-212 446-516 (652)
200 COG1379 PHP family phosphoeste 45.2 1.3E+02 0.0028 31.3 8.8 49 114-162 303-352 (403)
201 PRK07956 ligA NAD-dependent DN 44.8 10 0.00022 43.1 1.2 32 146-180 468-500 (665)
202 PRK08609 hypothetical protein; 43.6 22 0.00048 39.6 3.6 17 195-211 49-65 (570)
203 PRK14600 ruvA Holliday junctio 43.2 15 0.00033 34.9 1.9 43 193-237 72-116 (186)
204 PRK14351 ligA NAD-dependent DN 41.2 15 0.00033 41.9 1.8 58 146-211 485-545 (689)
205 PRK13482 DNA integrity scannin 40.5 24 0.00052 36.9 3.0 34 177-210 298-335 (352)
206 PF13174 TPR_6: Tetratricopept 40.4 57 0.0012 20.4 3.9 28 120-147 5-32 (33)
207 PF00416 Ribosomal_S13: Riboso 39.8 23 0.00051 30.4 2.4 22 193-214 14-35 (107)
208 PRK14668 uvrC excinuclease ABC 39.6 40 0.00088 37.7 4.8 75 124-213 499-576 (577)
209 PRK14604 ruvA Holliday junctio 39.0 19 0.00042 34.5 1.9 45 193-237 72-117 (195)
210 PF10440 WIYLD: Ubiquitin-bind 36.7 65 0.0014 25.4 4.2 41 75-129 23-63 (65)
211 COG0632 RuvA Holliday junction 35.9 22 0.00049 34.2 1.8 44 193-236 72-116 (201)
212 PF00570 HRDC: HRDC domain Blo 34.7 39 0.00084 25.9 2.7 31 171-208 28-58 (68)
213 PF03118 RNA_pol_A_CTD: Bacter 34.5 27 0.00059 27.3 1.8 47 163-211 14-61 (66)
214 KOG3835 Transcriptional corepr 33.2 87 0.0019 33.0 5.6 57 131-187 20-80 (495)
215 COG4277 Predicted DNA-binding 32.1 31 0.00068 35.3 2.2 22 191-212 327-348 (404)
216 PRK00558 uvrC excinuclease ABC 30.6 73 0.0016 35.8 5.0 77 124-213 515-594 (598)
217 PRK14672 uvrC excinuclease ABC 30.6 84 0.0018 35.9 5.4 83 125-222 581-668 (691)
218 smart00611 SEC63 Domain of unk 30.4 93 0.002 31.3 5.4 45 164-211 124-168 (312)
219 PLN03187 meiotic recombination 30.4 3.5E+02 0.0076 28.2 9.7 91 139-232 45-180 (344)
220 COG1255 Uncharacterized protei 29.2 87 0.0019 27.7 4.1 75 201-277 21-95 (129)
221 PF03686 UPF0146: Uncharacteri 29.2 26 0.00057 31.3 1.0 74 201-276 21-94 (127)
222 PRK08097 ligB NAD-dependent DN 29.2 54 0.0012 36.5 3.6 24 191-214 517-540 (562)
223 TIGR02238 recomb_DMC1 meiotic 28.1 2.5E+02 0.0054 28.8 8.1 85 139-226 15-140 (313)
224 TIGR02236 recomb_radA DNA repa 27.7 3.4E+02 0.0073 27.4 9.0 40 138-180 12-53 (310)
225 KOG1689 mRNA cleavage factor I 27.7 1.4E+02 0.003 28.1 5.4 39 345-391 84-122 (221)
226 COG1491 Predicted RNA-binding 27.4 38 0.00083 32.2 1.8 42 191-236 127-168 (202)
227 PRK14976 5'-3' exonuclease; Pr 26.1 39 0.00085 34.2 1.8 18 195-212 192-209 (281)
228 PRK00254 ski2-like helicase; P 26.1 1E+02 0.0023 35.2 5.4 32 188-219 639-670 (720)
229 COG1796 POL4 DNA polymerase IV 26.0 1.2E+02 0.0026 31.4 5.1 64 137-213 80-147 (326)
230 TIGR00575 dnlj DNA ligase, NAD 25.8 1.7E+02 0.0038 33.3 7.0 22 192-213 528-549 (652)
231 PRK09482 flap endonuclease-lik 25.3 43 0.00094 33.5 1.9 20 194-213 182-201 (256)
232 PRK00254 ski2-like helicase; P 25.2 64 0.0014 37.0 3.4 23 191-213 675-697 (720)
233 TIGR01954 nusA_Cterm_rpt trans 24.9 1.2E+02 0.0025 21.6 3.7 35 144-181 13-48 (50)
234 cd00008 53EXOc 5'-3' exonuclea 24.8 45 0.00097 32.8 1.9 19 194-212 183-201 (240)
235 PF01367 5_3_exonuc: 5'-3' exo 24.5 27 0.00059 29.9 0.2 21 193-213 17-37 (101)
236 PRK07758 hypothetical protein; 24.5 49 0.0011 28.0 1.8 20 192-211 65-84 (95)
237 CHL00137 rps13 ribosomal prote 24.5 47 0.001 29.5 1.7 21 193-213 16-36 (122)
238 COG0258 Exo 5'-3' exonuclease 24.4 1.2E+02 0.0025 31.0 4.8 48 154-212 169-216 (310)
239 PRK14667 uvrC excinuclease ABC 24.1 1.1E+02 0.0024 34.1 5.0 76 125-216 487-567 (567)
240 PF14443 DBC1: DBC1 24.1 3.7E+02 0.0081 24.0 7.3 49 346-395 9-59 (126)
241 PF12826 HHH_2: Helix-hairpin- 24.0 1E+02 0.0022 23.8 3.4 40 138-179 16-55 (64)
242 smart00475 53EXOc 5'-3' exonuc 23.8 48 0.0011 33.1 1.9 17 196-212 188-204 (259)
243 PRK14973 DNA topoisomerase I; 23.8 4.3E+02 0.0092 31.6 9.8 61 145-218 765-826 (936)
244 PF04919 DUF655: Protein of un 23.7 56 0.0012 31.0 2.1 30 189-218 111-140 (181)
245 PRK04301 radA DNA repair and r 23.5 4E+02 0.0086 27.1 8.6 86 136-224 17-144 (317)
246 TIGR00375 conserved hypothetic 23.0 2.5E+02 0.0054 29.8 7.0 48 114-161 296-344 (374)
247 PRK14666 uvrC excinuclease ABC 22.9 1.4E+02 0.0029 34.3 5.3 75 125-213 610-688 (694)
248 PRK01172 ski2-like helicase; P 22.1 4.5E+02 0.0098 29.7 9.5 91 139-229 545-647 (674)
249 PRK05179 rpsM 30S ribosomal pr 21.9 56 0.0012 28.9 1.7 21 193-213 16-36 (122)
250 PF14490 HHH_4: Helix-hairpin- 21.5 3.8E+02 0.0083 22.1 6.7 53 155-213 7-65 (94)
251 PRK14552 C/D box methylation g 20.9 4.4E+02 0.0095 28.3 8.5 17 77-93 152-168 (414)
No 1
>PRK10880 adenine DNA glycosylase; Provisional
Probab=100.00 E-value=7.1e-76 Score=599.74 Aligned_cols=341 Identities=35% Similarity=0.602 Sum_probs=293.7
Q ss_pred HHHHHHHHHHHhhCCC-CCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHH
Q 011579 81 KKIRQSLLQWYDKNQR-ELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEV 159 (482)
Q Consensus 81 ~~~~~~L~~wy~~~~r-~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~eel 159 (482)
..|.+.|++||..++| +||||.+ .|||++|||+||+|||++++|.++|.+|+++|||+++|++|++++|
T Consensus 4 ~~~~~~ll~W~~~~~r~~lpWr~~----------~dpy~ilVseILlQQT~v~~v~~~~~rl~~~fPt~~~La~a~~eel 73 (350)
T PRK10880 4 SQFSAQVLDWYDKYGRKTLPWQID----------KTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEV 73 (350)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCC----------CCHHHHHHHHHHHhhccHHHHHHHHHHHHHHCcCHHHHHCcCHHHH
Confidence 3689999999999997 8999985 5899999999999999999999999999999999999999999999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhhcccC
Q 011579 160 NEMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISA 238 (482)
Q Consensus 160 ~~~i~~lG~~~RA~~L~~~a~~i~~~-~g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~~~~ 238 (482)
+++|+++|||+||++|+++|+.|+++ +|.+|+++++|++|||||+|||++||+||||+++++||+||+||++|+++++.
T Consensus 74 ~~~~~glGyy~RAr~L~~~A~~i~~~~~g~~p~~~~~L~~LpGIG~~TA~aIl~~af~~~~~iVD~nV~RV~~Rl~~i~~ 153 (350)
T PRK10880 74 LHLWTGLGYYARARNLHKAAQQVATLHGGEFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSG 153 (350)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHhCCCchhhHHHHhcCCCccHHHHHHHHHHHCCCCeecccHHHHHHHHHHhcccC
Confidence 99999999999999999999999987 88999999999999999999999999999999999999999999999998876
Q ss_pred CCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhhhhccCCCCCCCCCCCcccChhhhccCCCCCcceecccccccccc
Q 011579 239 NPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKAR 318 (482)
Q Consensus 239 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~~~~~~~~~~~P~k~~K~k 318 (482)
.+....+.+.+|++++.++|.+.+++||++||+||+.+|+|++|+|..|||++.|.+|+.+. ++.||+|++|++
T Consensus 154 ~~~~~~~~~~l~~~~~~l~p~~~~~~~nqalm~lGa~vC~p~~P~C~~Cpl~~~C~~~~~~~------~~~~P~k~~k~~ 227 (350)
T PRK10880 154 WPGKKEVENRLWQLSEQVTPAVGVERFNQAMMDLGAMVCTRSKPKCELCPLQNGCIAYANHS------WALYPGKKPKQT 227 (350)
T ss_pred CCChHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhHHhccCCCCCCCCCccHhhhHHHHcCC------HhhCCCCCCCCC
Confidence 55555677789999999999999999999999999999999999999999999999999885 688999988877
Q ss_pred cceeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCc
Q 011579 319 QRHDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNC 398 (482)
Q Consensus 319 ~~~~~vav~Ii~~~~~~~~~~~~~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~ 398 (482)
.+.....+.|+ ..+|++|+.|||++|+|+||||||+.+ . ++.+...+ +++|+...
T Consensus 228 ~~~~~~~~~~~------------~~~~~~~l~~r~~~gl~~gl~~fP~~~--~-------~~~~~~~~-~~~~~~~~--- 282 (350)
T PRK10880 228 LPERTGYFLLL------------QHGDEVWLEQRPPSGLWGGLFCFPQFA--D-------EEELRQWL-AQRGIAAD--- 282 (350)
T ss_pred CCeEEEEEEEE------------EECCEEEEEECCccChhhccccCCCCc--c-------hhhHHHHH-HhcCCchh---
Confidence 77666665555 346899999999999999999999852 1 12233333 46776532
Q ss_pred ccccccccccEEEEcCceEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccCC
Q 011579 399 SIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKSP 473 (482)
Q Consensus 399 ~~~~~~~l~~v~H~fth~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~ 473 (482)
....+++++|+|||++|++++|.+.+ .+.... ....+..|++.+++.+++||++++|+++.+.-
T Consensus 283 ---~~~~~~~~~H~fTH~~~~~~~~~~~~--~~~~~~------~~~~~~~w~~~~~~~~~~~p~~~~k~l~~~~~ 346 (350)
T PRK10880 283 ---NLTQLTAFRHTFSHFHLDIVPMWLPV--SSFTGC------MDEGNGLWYNLAQPPSVGLAAPVERLLQQLRT 346 (350)
T ss_pred ---hhcccCceEEEEeeEEEEEEEEEEEc--cccccc------cCCcCCeEechHHhcccCCcHHHHHHHHHhcc
Confidence 12347899999999999999887642 211100 01124469999999999999999999987743
No 2
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-73 Score=569.31 Aligned_cols=333 Identities=44% Similarity=0.775 Sum_probs=290.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHH
Q 011579 79 EVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEE 158 (482)
Q Consensus 79 ~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~ee 158 (482)
....|++.|+.||+.++|+||||.+ .+||.+||||||+|||++++|+++|.+|+++|||+++||+|+++|
T Consensus 7 ~~~~~~~~ll~Wy~~~~R~LPWR~~----------~~PY~VwvSEiMLQQT~v~~Vi~yy~~fl~rfPti~~LA~A~~~e 76 (342)
T COG1194 7 DIEKFQEALLDWYDKNGRDLPWRET----------KDPYRVWVSEIMLQQTQVATVIPYYERFLERFPTIKALAAAPEDE 76 (342)
T ss_pred hhHHHHHHHHHHHHHhCCcCCCCCC----------CCcceehhHHHHhhhccHhhhhhhHHHHHHhCCCHHHHhcCCHHH
Confidence 3447899999999999999999996 569999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhhccc
Q 011579 159 VNEMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAIS 237 (482)
Q Consensus 159 l~~~i~~lG~~~RA~~L~~~a~~i~~~-~g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~~~ 237 (482)
|..+|.|+|||+||++|+++|+.+++. +|.+|++.++|.+|||||+|||++||+|+||+|.++||+||.||+.|++.++
T Consensus 77 vl~~W~gLGYysRArnL~~~A~~v~~~~~G~~P~~~~~l~~LpGiG~yTa~Ail~~a~~~~~~~lDgNV~RVl~R~f~i~ 156 (342)
T COG1194 77 VLKAWEGLGYYSRARNLHKAAQEVVERHGGEFPDDEEELAALPGVGPYTAGAILSFAFNQPEPVLDGNVKRVLSRLFAIS 156 (342)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhCCCCcHHHHHHHHHHHhCCCCceeecchheeehhhhccc
Confidence 999999999999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCC-hhHHHHHHHHHhhhhccCCCCCCCCCCCcccChhhhccCCCCCcceecccccccc
Q 011579 238 ANPKDTSTVKNFWKLATQLVDSCR-PGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLK 316 (482)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~~~~~~~~~~~P~k~~K 316 (482)
.+.....+.+.+|++++.++.++. +++||++|||+|+.||++.+|+|+.|||++.|.+|..+. ...||+|++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~ll~p~~~~~~fnqammdlGA~ICt~~~P~C~~CPl~~~c~a~~~g~------~~~~P~k~~k 230 (342)
T COG1194 157 GDIGKPKTKKELWELAEQLLTPDRRPGDFNQAMMDLGATICTAKKPKCSLCPLRDNCAAYRNGT------PEKYPVKKPK 230 (342)
T ss_pred ccccccchhHHHHHHHHHhcCCCCChHHHHHHHHHhhhHhhcCCCCCCCcCcchHHHHHHHcCC------cccCCCcCcc
Confidence 877766788999999999776666 899999999999999999999999999999999999995 5789999999
Q ss_pred cccceeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCC
Q 011579 317 ARQRHDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRN 396 (482)
Q Consensus 317 ~k~~~~~vav~Ii~~~~~~~~~~~~~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~ 396 (482)
++++ +..++.++. ..+|++++.||+++|+|+|||+||.++.+.+ ++.- +. ..++.
T Consensus 231 ~~~~-~~~~~~~~~-----------~~~~~~~l~kr~~~gl~~gl~~fP~~e~~~~--------~~~~-~~-~~~~~--- 285 (342)
T COG1194 231 KKLP-RRFAAFLIL-----------NRDGEVLLEKRPEKGLLGGLWCFPQFEDEAD--------LLDW-LA-ADGLA--- 285 (342)
T ss_pred cccc-hheeeEEEE-----------ccCcchhhhhCcccCceecccccccccccch--------hhhH-hh-hcccc---
Confidence 8877 444444443 6789999999999999999999999865331 1111 11 11211
Q ss_pred CcccccccccccEEEEcCceEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccC
Q 011579 397 NCSIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKS 472 (482)
Q Consensus 397 ~~~~~~~~~l~~v~H~fth~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~ 472 (482)
.+++++++|+|||++|+++ +.. .... ... ++.|++.++++.+++|.+++|+++.+.
T Consensus 286 ------~~~~~~~~H~fth~~l~i~-~~a--~~~~----------~~~-~~~w~~~~~~~~~~l~~p~~k~l~~~~ 341 (342)
T COG1194 286 ------AEPLGAFRHTFTHFRLTIE-LRA--SASL----------VLS-DGRWYNLSDLESIGLPAPVKKLLQQLK 341 (342)
T ss_pred ------cccccceeeeeeEEEEEEE-EEe--eccc----------CCC-CceeccccccccccccHHHHHHHHHhc
Confidence 2578999999999999998 322 1111 122 688999999999999999999998753
No 3
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=100.00 E-value=2.3e-66 Score=515.66 Aligned_cols=259 Identities=45% Similarity=0.836 Sum_probs=241.0
Q ss_pred HHHHHHHHHhhCCC-CCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHH
Q 011579 83 IRQSLLQWYDKNQR-ELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNE 161 (482)
Q Consensus 83 ~~~~L~~wy~~~~r-~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~eel~~ 161 (482)
|++.|++||..++| ++|||.+ .|||++||++||+|||++++|.++|.+|+++|||+++|++|++++|.+
T Consensus 2 ~~~~l~~w~~~~~r~~lpWr~~----------~dpy~vlvseIL~QQT~v~~v~~~~~rl~~~fpt~~~La~a~~eeL~~ 71 (275)
T TIGR01084 2 FSEDLLSWYDKYGRKTLPWRQN----------KTPYRVWLSEVMLQQTQVATVIPYFERFLERFPTVQALANAPQDEVLK 71 (275)
T ss_pred hHHHHHHHHHHhCCCCCCCCCC----------CCHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCHHHHHCcCHHHHHH
Confidence 67899999999998 9999985 589999999999999999999999999999999999999999999999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhhcccCCC
Q 011579 162 MWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANP 240 (482)
Q Consensus 162 ~i~~lG~~~RA~~L~~~a~~i~~~-~g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~~~~~~ 240 (482)
+|+++|||+||++|+++|+.|+++ +|.+|+++++|++|||||+|||++|++|+||+|.++||+||+||++|+++++.++
T Consensus 72 ~~~~lG~y~RAr~L~~~A~~i~~~~~g~~p~~~~~L~~LpGIG~~TA~~Il~~a~~~~~~~vD~~v~RVl~Rl~~~~~~~ 151 (275)
T TIGR01084 72 LWEGLGYYARARNLHKAAQEVVEEFGGEFPQDFEDLAALPGVGRYTAGAILSFALNKPYPILDGNVKRVLSRLFAVEGWP 151 (275)
T ss_pred HHHHCCcHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcchHhHHHHHHHHccCcCCC
Confidence 999999999999999999999987 7889999999999999999999999999999999999999999999999987666
Q ss_pred CChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhhhhccCCCCCCCCCCCcccChhhhccCCCCCcceecccccccccccc
Q 011579 241 KDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQR 320 (482)
Q Consensus 241 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~~~~~~~~~~~P~k~~K~k~~ 320 (482)
+...+.+.+|.+++.++|.+.+++||++||+||+.+|++++|+|+.|||++.|.++..+. +..||+|++|++++
T Consensus 152 ~~~~~~~~l~~~~~~~lp~~~~~~~n~alm~lG~~vC~~~~P~C~~Cpl~~~C~~~~~~~------~~~~p~~~~~~~~~ 225 (275)
T TIGR01084 152 GKKKVENRLWTLAESLLPKADPEAFNQALMDLGAMICTRKKPKCDLCPLQDFCLAYQQGT------WEEYPVKKPKAAPP 225 (275)
T ss_pred CHHHHHHHHHHHHHHHCChhhHHHHHHHHHHHhHHHcCCCCCCCCCCCChhhCHHHHcCC------HhhcCCCCCCCCCC
Confidence 555677889999999999999999999999999999999999999999999999999885 67899999887777
Q ss_pred eeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCCCCCcccccCccc
Q 011579 321 HDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSII 368 (482)
Q Consensus 321 ~~~vav~Ii~~~~~~~~~~~~~~~gkvLl~KRp~~gllaGLWEFPggk 368 (482)
.....++++. ..+|++|+.|||++|+|+||||||+.+
T Consensus 226 ~~~~~~~~~~-----------~~~~~~~~~~r~~~~~~~gl~~~p~~~ 262 (275)
T TIGR01084 226 ERTTYFLVLQ-----------NYDGEVLLEQRPEKGLWGGLYCFPQFE 262 (275)
T ss_pred eEEEEEEEEE-----------eCCCeEEEEeCCCCchhhccccCCCCC
Confidence 7776666663 457899999999999999999999863
No 4
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair]
Probab=100.00 E-value=2.6e-65 Score=507.14 Aligned_cols=372 Identities=47% Similarity=0.763 Sum_probs=301.0
Q ss_pred hhhhhhcCHHHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCH
Q 011579 69 EDIEDLFSEKEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTI 148 (482)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~ 148 (482)
.+++++|+..|+..|+..|++||+.++|+||||+-.+.+ +.+.++..|++|||+||+|||++++|.+||.+|+++|||.
T Consensus 79 ~sy~~l~~~~Ev~~fR~sLl~wYD~~KRdLPWR~r~sEd-e~DwerRaYeVwVSEiMLQQTrV~TV~~YYt~WMqkwPTl 157 (555)
T KOG2457|consen 79 GSYEDLFSENEVQKFRMSLLDWYDVNKRDLPWRNRRSED-EKDWERRAYEVWVSEIMLQQTRVQTVMKYYTRWMQKWPTL 157 (555)
T ss_pred CcHHHHhhHHHHHHHHHHHHHHhhhhcccCccccCCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 366789999999999999999999999999999975322 3556778999999999999999999999999999999999
Q ss_pred HHHHhCCH-HHHHHHHhccCcHHHHHHHHHHHHHHHHc-CCCCCCchhhhhc-CCCCcHHHHHHHHHhhcCCeeeeecCc
Q 011579 149 HHLAKASL-EEVNEMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRK-VPGIGNYTAGAIASIAFKEVVPVVDGN 225 (482)
Q Consensus 149 ~~La~a~~-eel~~~i~~lG~~~RA~~L~~~a~~i~~~-~g~~p~~~~~L~~-lpGIG~~TA~~il~fa~~~p~~~vD~~ 225 (482)
.+|++|+. ++|.++|.|+|||+|+|+|++.|+.+++. .|.+|.+-+.|++ +||||+|||++|+++|||++.-+||+|
T Consensus 158 ~dla~Asl~~eVn~lWaGlGyY~R~rrL~ega~~vv~~~~ge~Prta~~l~kgvpGVG~YTAGAiaSIAf~q~tGiVDGN 237 (555)
T KOG2457|consen 158 YDLAQASLEKEVNELWAGLGYYRRARRLLEGAKMVVAGTEGEFPRTASSLMKGVPGVGQYTAGAIASIAFNQVTGIVDGN 237 (555)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhCCCCCccchhhhhhhhhcCcccccccc
Confidence 99999999 89999999999999999999999999998 8889999999999 999999999999999999999999999
Q ss_pred hhhhHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhhhhccCCCCCCCCCCCcccChhhhccCCCCCc
Q 011579 226 VIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSV 305 (482)
Q Consensus 226 v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~~~~~~ 305 (482)
|.||++|...+..++.+....+.+|.+|.+++++.+|+||||++|++|+.+|||.+|.|+.||+.+.|.+|+...+.+.+
T Consensus 238 VirvlsRalAIhsDcSkgk~~q~~wkLA~qLVDP~RPGDFNQalMELGAt~CTpq~P~CS~CPvss~CrA~q~~Eqn~~i 317 (555)
T KOG2457|consen 238 VIRVLSRALAIHSDCSKGKFFQSSWKLAAQLVDPSRPGDFNQALMELGATLCTPQKPSCSSCPVSSQCRAFQLSEQNRTI 317 (555)
T ss_pred hHHHhHHhHhhcCCcchhhHHHHHHHHHHHhcCCCCCCcHHHHHHHhcCeeccCCCCCcCCCCcHHHHHHHhHhhhccee
Confidence 99999999999988888888899999999999999999999999999999999999999999999999999976554433
Q ss_pred c------------------------------------eecccccccccccceeeeeeEEEEEecCCCCCCcccCCCeEEE
Q 011579 306 L------------------------------------VTSYPMKVLKARQRHDVSAACVVEILGGNDESERTQPDGVFIL 349 (482)
Q Consensus 306 ~------------------------------------~~~~P~k~~K~k~~~~~vav~Ii~~~~~~~~~~~~~~~gkvLl 349 (482)
. +..||++..+++.+-++.+++|.+ ..++. ...+.||+
T Consensus 318 ~~g~t~~~dve~~~P~~~~C~vCv~~ips~e~~Qs~gv~~~p~~p~~~~~reE~~~v~~~e---~~dp~---t~~~~ilv 391 (555)
T KOG2457|consen 318 SVGDTYPTDVEKAKPRHDFCCVCVLEIPSLERNQSGGVFVLPKRPEQLAGREEFPSVILNE---EADPA---TRRNAILV 391 (555)
T ss_pred ecCCcCCccHhhcCCCCCceeEeecCCCCchhhccCcEEEeccChhhcCcccccceeeeec---cCCch---hhcceeEE
Confidence 2 334555555555554555444432 22221 23579999
Q ss_pred EecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCccccccccc---ccEEEEcCceEEEEEEEEEE
Q 011579 350 VKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDV---GEFVHIFSHIRLKVHVELLV 426 (482)
Q Consensus 350 ~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l---~~v~H~fth~~l~L~~~~~~ 426 (482)
.+||+.|+++|||+||.+...+......+...+.+-+...++....- .+... |...|+|||+.++-+||...
T Consensus 392 ~~rp~~gllagLw~fpti~~~e~se~~~~~a~~q~~v~~w~~~~~~t-----~~~~~~~~G~~~htfshi~~ts~V~~~a 466 (555)
T KOG2457|consen 392 YLRPAFGLLAGLWKFPTIVSRELSEFVHIFAHIQRKVYVWLLVVQLT-----GGTEDLFKGQAKHTFSHICVTSDVLSTA 466 (555)
T ss_pred EeccchhHHHHhhhcCceeccCcchHHHHHHHHHHHHHHHhcccccc-----cchhhhcccchhhhhhhhhhHHHHHHHh
Confidence 99999999999999999876322122233334444466666654320 22333 88999999999988887543
Q ss_pred EEEeCCcccccccccCCCCeeeeeccCCcccCC
Q 011579 427 LCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMG 459 (482)
Q Consensus 427 ~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~ 459 (482)
+ .+..... ...-.++|+...+|+...
T Consensus 467 ~--~~~~~vt-----~~p~~~~wi~q~~l~h~~ 492 (555)
T KOG2457|consen 467 G--LTSAVVT-----VPPFRLQWIKQLSLDHMV 492 (555)
T ss_pred h--cCCCccc-----cCCcccchhhhhhhHHHH
Confidence 2 2211111 222457899988886544
No 5
>PRK13910 DNA glycosylase MutY; Provisional
Probab=100.00 E-value=1.7e-62 Score=489.55 Aligned_cols=282 Identities=30% Similarity=0.513 Sum_probs=237.6
Q ss_pred HhhhccHHHHHH-HHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCC
Q 011579 125 MLQQTRVQTVID-YYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGI 202 (482)
Q Consensus 125 l~Qqt~~~~v~~-~~~~l~~~~pt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~-~g~~p~~~~~L~~lpGI 202 (482)
|+|||++++|.+ +|.+|+++|||+++||+|+++||+++|+++|||+||++|+++|+.|+++ +|.+|.++++|++||||
T Consensus 1 mlQQT~v~~v~~~yy~rf~~~fPt~e~La~a~~~el~~~~~glGyy~RAr~L~~~A~~i~~~~~g~~P~~~~~L~~LpGI 80 (289)
T PRK13910 1 MSQQTQINTVVERFYSPFLEAFPTLKDLANAPLEEVLLLWRGLGYYSRAKNLKKSAEICVKEHHSQLPNDYQSLLKLPGI 80 (289)
T ss_pred CCCCCcHHHhHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCCCCChhHHHHHhCCCC
Confidence 899999999986 9999999999999999999999999999999999999999999999987 78999999999999999
Q ss_pred cHHHHHHHHHhhcCCeeeeecCchhhhHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhhhhccCCCC
Q 011579 203 GNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNP 282 (482)
Q Consensus 203 G~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P 282 (482)
|+|||++||+||||+|+++||+||+||++|++++..+. +.+.++..++.++|.+.++++|++||+||+.+|++ +|
T Consensus 81 G~kTA~aIl~~af~~~~~~VD~nV~RVl~Rl~g~~~~~----~~~~l~~~~~~~l~~~~~~~~nqaLm~~Ga~iC~~-~P 155 (289)
T PRK13910 81 GAYTANAILCFGFREKSACVDANIKRVLLRLFGLDPNI----HAKDLQIKANDFLNLNESFNHNQALIDLGALICSP-KP 155 (289)
T ss_pred CHHHHHHHHHHHCCCCcCcccHHHHHHHHHHhcCCCCc----cHHHHHHHHHHhCCccchHHHHHHHHHHhHHHcCC-CC
Confidence 99999999999999999999999999999998776432 23457778888999999999999999999999999 79
Q ss_pred CCCCCCCcccChhhhccCCCCCcceecccccccccccceeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCCCCCccc
Q 011579 283 NCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQRHDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLW 362 (482)
Q Consensus 283 ~C~~Cpl~~~C~~~~~~~~~~~~~~~~~P~k~~K~k~~~~~vav~Ii~~~~~~~~~~~~~~~gkvLl~KRp~~gllaGLW 362 (482)
+|+.|||++.|.++..+.+ .. +|++|++++.....+ ++ ..+|++|+.||+ +|+|+|||
T Consensus 156 ~C~~CPl~~~C~~~~~~~~------~~--~~~kk~~~~~~~~~~-~~------------~~~~~~ll~kr~-~~l~~gl~ 213 (289)
T PRK13910 156 KCAICPLNPYCLGKNNPEK------HT--LKKKQEIVQEERYLG-VV------------IQNNQIALEKIE-QKLYLGMH 213 (289)
T ss_pred CCCCCcChhhhhhhhcCCc------cc--cCCCCCCCceEEEEE-EE------------EECCEEEEEECC-Cchhcccc
Confidence 9999999999999998863 23 344444334333333 33 236799999995 78999999
Q ss_pred ccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEEEEEEEEEEeCCcccccccccC
Q 011579 363 EFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDK 442 (482)
Q Consensus 363 EFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~~~~~~~~~~~~~~~~~~~~~~ 442 (482)
|||+.+ . +++... ..+++++|+|||++|++++|.+.+ ..
T Consensus 214 ~fP~~~--~-----------------~~~~~~---------~~~~~~~H~fTH~~~~~~~~~~~~--~~----------- 252 (289)
T PRK13910 214 HFPNLK--E-----------------NLEYKL---------PFLGAIKHSHTKFKLNLNLYLAAI--KD----------- 252 (289)
T ss_pred cCCCCh--h-----------------hhcccc---------cccCceEEEEEeEEEEEEEEEEEe--cc-----------
Confidence 999752 0 011111 136789999999999999987643 21
Q ss_pred CCCeeeeeccCCcccCCCChHhHHHHhccCCC
Q 011579 443 GTLSWKCVDGGTLASMGLTSGVRKVMMGKSPP 474 (482)
Q Consensus 443 e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~ 474 (482)
...+++|++.+++.+++||++++|+++.|..+
T Consensus 253 ~~~~~~w~~~~~~~~~~~p~~~~k~~~~l~~~ 284 (289)
T PRK13910 253 LKNPIRFYSLKDLETLPISSMTLKILNFLKQK 284 (289)
T ss_pred CCccceEecHHHhhhcCCcHHHHHHHHHHhhh
Confidence 01346899999999999999999999988765
No 6
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.3e-49 Score=374.74 Aligned_cols=204 Identities=27% Similarity=0.448 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCH
Q 011579 77 EKEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASL 156 (482)
Q Consensus 77 ~~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~ 156 (482)
+..+..+.+.|..-|+.....+-|. |||++||+.||||||+++.+.+++.+||++||||++|+++++
T Consensus 3 ~~~~~~i~~~l~~~~p~~~~~l~~~-------------~pf~lLva~iLSaqttD~~vn~at~~Lf~~~~t~e~l~~a~~ 69 (211)
T COG0177 3 KKKALEILDRLRELYPEPKTELDFK-------------DPFELLVAVILSAQTTDEVVNKATPALFKRYPTPEDLLNADE 69 (211)
T ss_pred HhhHHHHHHHHHHHCCCCCCccCcC-------------CcHHHHHHHHHhccCchHHHHHHHHHHHHHcCCHHHHHcCCH
Confidence 3456678888888888766655544 599999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCcHH-HHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhh
Q 011579 157 EEVNEMWAGLGYYR-RARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLK 234 (482)
Q Consensus 157 eel~~~i~~lG~~~-RA~~L~~~a~~i~~~-~g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~ 234 (482)
++|+++|+++|||+ ||++|+++|+.|+++ +|++|+++++|++|||||+|||++||+++||.|+++|||||.||.+|++
T Consensus 70 ~~l~~~I~~iGlyr~KAk~I~~~~~~l~e~~~g~vP~~~~eL~~LPGVGrKTAnvVL~~a~g~p~i~VDTHV~Rvs~R~g 149 (211)
T COG0177 70 EELEELIKSIGLYRNKAKNIKELARILLEKFGGEVPDTREELLSLPGVGRKTANVVLSFAFGIPAIAVDTHVHRVSNRLG 149 (211)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcCCCCCchHHHHHhCCCcchHHHHHHHHhhcCCCcccccchHHHHHHHhC
Confidence 99999999999999 999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhhhhccCCCCCCCCCCCcccChhhhc
Q 011579 235 AISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSM 298 (482)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~ 298 (482)
+.+. .+..+++..+.+++|.+.|.++|++|+.|||.+|++++|+|+.||+++.|++++.
T Consensus 150 l~~~-----~~p~~ve~~L~~~iP~~~~~~~h~~lI~~GR~iC~ar~P~C~~C~l~~~C~~~~~ 208 (211)
T COG0177 150 LVPG-----KTPEEVEEALMKLIPKELWTDLHHWLILHGRYICKARKPRCEECPLADLCPSAGK 208 (211)
T ss_pred CCCC-----CCHHHHHHHHHHHCCHHHHHHHHHHHHHhhhhhccCCCCCcCcccchhhCchhcc
Confidence 9862 1334566667789999999999999999999999999999999999999999864
No 7
>PRK10702 endonuclease III; Provisional
Probab=100.00 E-value=5e-47 Score=364.05 Aligned_cols=202 Identities=18% Similarity=0.257 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHH
Q 011579 78 KEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLE 157 (482)
Q Consensus 78 ~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~e 157 (482)
+++..+.+.|.+.|+... +|.. .+|||++||++||+|||++.+|.+++.+|+.+||||++|++|+++
T Consensus 4 ~~~~~i~~~l~~~~~~~~---~~~~----------~~~p~e~lvs~iLsq~t~~~~v~~~~~~L~~~~pt~e~l~~a~~~ 70 (211)
T PRK10702 4 AKRLEILTRLRDNNPHPT---TELN----------FSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVE 70 (211)
T ss_pred HHHHHHHHHHHHHCCCCC---CCCC----------CCChHHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCHHHHHCCCHH
Confidence 446678888888886433 3443 257999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCcHH-HHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhhc
Q 011579 158 EVNEMWAGLGYYR-RARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKA 235 (482)
Q Consensus 158 el~~~i~~lG~~~-RA~~L~~~a~~i~~~-~g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~ 235 (482)
+|+++|+++|||+ ||++|+++|+.++++ +|.+|+++++|++|||||+|||++||+|+||+|+++||+||+||++|+|+
T Consensus 71 ~l~~~i~~~G~y~~kA~~l~~~a~~i~~~~~~~~p~~~~~Ll~lpGVG~ktA~~ill~a~~~~~~~VDt~v~Rv~~r~g~ 150 (211)
T PRK10702 71 GVKTYIKTIGLYNSKAENVIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQF 150 (211)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCCchHHHHhcCCcccHHHHHHHHHHHcCCCcccccchHHHHHHHhCC
Confidence 9999999999998 999999999999987 78899999999999999999999999999999999999999999999998
Q ss_pred ccCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhhhhccCCCCCCCCCCCcccChhhh
Q 011579 236 ISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYS 297 (482)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~ 297 (482)
.... +..++...+...+|.+.+.++|++||+||+.+|++++|+|+.|||++.|.++.
T Consensus 151 ~~~~-----~~~~~~~~l~~~lp~~~~~~~~~~li~~Gr~~C~~~~P~C~~Cpl~~~C~~~~ 207 (211)
T PRK10702 151 APGK-----NVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKE 207 (211)
T ss_pred CCCC-----CHHHHHHHHHHhCCchHHHHHHHHHHHHhHHHcCCCCCCCCCCcChhhcCccc
Confidence 6431 23345556667889999999999999999999999999999999999999764
No 8
>TIGR01083 nth endonuclease III. This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=100.00 E-value=2.5e-40 Score=313.92 Aligned_cols=187 Identities=25% Similarity=0.396 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHH
Q 011579 80 VKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEV 159 (482)
Q Consensus 80 ~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~eel 159 (482)
+..+.+.|.+.|+.....++| .|||++||++||+|||+++++.+++.+|++.||||++|+++++++|
T Consensus 3 ~~~i~~~l~~~~~~~~~~~~~-------------~dpf~~Li~~ILsqqt~~~~~~~~~~~l~~~~pt~~~l~~~~~~~L 69 (191)
T TIGR01083 3 AQEILERLRKNYPHPTTELDY-------------NNPFELLVATILSAQATDKSVNKATKKLFEVYPTPQALAQAGLEEL 69 (191)
T ss_pred HHHHHHHHHHHCCCCCcccCC-------------CCHHHHHHHHHHHhhCcHHHHHHHHHHHHHHCCCHHHHHcCCHHHH
Confidence 457888899888753322333 3699999999999999999999999999999999999999999999
Q ss_pred HHHHhccCcHH-HHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhhccc
Q 011579 160 NEMWAGLGYYR-RARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAIS 237 (482)
Q Consensus 160 ~~~i~~lG~~~-RA~~L~~~a~~i~~~-~g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~~~ 237 (482)
.++|+++|||+ ||++|+++|+.+.++ +|.+|+++++|++|||||+|||++||+|+||+|.++||+||+|++.|+|+..
T Consensus 70 ~~~ir~~G~~~~Ka~~i~~~a~~i~~~~~~~~~~~~~~L~~l~GIG~ktA~~ill~~~~~~~~~vD~~v~Ri~~r~g~~~ 149 (191)
T TIGR01083 70 EEYIKSIGLYRNKAKNIIALCRILVERYGGEVPEDREELVKLPGVGRKTANVVLNVAFGIPAIAVDTHVFRVSNRLGLSK 149 (191)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHcCCCCchHHHHHHhCCCCcHHHHHHHHHHHcCCCccccchhHHHHHHHcCCCC
Confidence 99999999998 999999999999987 7789999999999999999999999999999999999999999999998764
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhhhhccCCCCCC
Q 011579 238 ANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNC 284 (482)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C 284 (482)
.. +.+++++.++.++|.+.+++||++||+||+.+|++++|+|
T Consensus 150 ~~-----~~~~~~~~l~~~~p~~~~~~~h~~li~~G~~~C~~~~P~C 191 (191)
T TIGR01083 150 GK-----DPDKVEEELLKLIPREFWTKLHHWLILHGRYTCKARKPLC 191 (191)
T ss_pred CC-----CHHHHHHHHHHHCCchhHHHHHHHHHHHhHHhcCCCCCCC
Confidence 31 2345666778899999999999999999999999999999
No 9
>PRK13913 3-methyladenine DNA glycosylase; Provisional
Probab=100.00 E-value=6.1e-34 Score=273.55 Aligned_cols=182 Identities=17% Similarity=0.162 Sum_probs=149.1
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHh-------CCCHHHHHhC
Q 011579 82 KIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTK-------WPTIHHLAKA 154 (482)
Q Consensus 82 ~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~-------~pt~~~La~a 154 (482)
.+.+.|.+.--...++.+|+.. .+||++||++||+|||++++|..++.+|+++ +|||++|+++
T Consensus 6 ~l~~~l~~~~~~~~~~~~WWp~----------~~~fevLV~aILsQqT~~~~v~~a~~~L~~~~~~~~~~~~t~e~L~~a 75 (218)
T PRK13913 6 ELLKALKSLDLLKNAPAWWWPN----------ALKFEALLGAVLTQNTKFEAVEKSLENLKNAFILENDDEINLKKIAYI 75 (218)
T ss_pred HHHHHHHhhhhhhcCCCCCCcC----------cCHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccccCCCHHHHHcC
Confidence 3555555533223334455542 5799999999999999999999999999884 6799999999
Q ss_pred CHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCC-----CCCchhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhh
Q 011579 155 SLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDG-----FPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIR 228 (482)
Q Consensus 155 ~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~-----~p~~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~R 228 (482)
+.++|+++|+++|||+ ||++|+++|+.+.+..|. .|+++++|++|||||+|||++||+|+||+|+|+||+|++|
T Consensus 76 ~~eeL~~~Irp~Gf~~~KA~~Lk~la~~i~~~~g~~~~~~~~~~re~Ll~l~GIG~kTAd~iLlya~~rp~fvVDty~~R 155 (218)
T PRK13913 76 EFSKLAECVRPSGFYNQKAKRLIDLSENILKDFGSFENFKQEVTREWLLDQKGIGKESADAILCYVCAKEVMVVDKYSYL 155 (218)
T ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCchhccCchHHHHHHcCCCccHHHHHHHHHHHcCCCccccchhHHH
Confidence 9999999999999999 999999999999987443 4678999999999999999999999999999999999999
Q ss_pred hHHhhhcccCCCCChHHHHHHHHHHHhhc-----------CC-----CChhHHHHHHHHHhhhhccC
Q 011579 229 VLARLKAISANPKDTSTVKNFWKLATQLV-----------DS-----CRPGDFNQSLMELGAVICTP 279 (482)
Q Consensus 229 vl~Rl~~~~~~~~~~~~~~~l~~~~~~l~-----------~~-----~~~~~~~~~l~~~G~~iC~~ 279 (482)
|++|+|+... ++. +++...+..+ |. ..+++||..|++||+..|.-
T Consensus 156 v~~RlG~~~~---~y~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Halive~~k~~~~~ 216 (218)
T PRK13913 156 FLKKLGIEIE---DYD---ELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQKLEL 216 (218)
T ss_pred HHHHcCCCCC---CHH---HHHHHHHHhhhhhhhhhhccccccchHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999987532 233 3444444443 11 24789999999999999964
No 10
>KOG1921 consensus Endonuclease III [Replication, recombination and repair]
Probab=100.00 E-value=2.9e-34 Score=271.89 Aligned_cols=210 Identities=24% Similarity=0.383 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHHhhCCCC-CCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhC-CCHHHHHhCC
Q 011579 78 KEVKKIRQSLLQWYDKNQRE-LPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKW-PTIHHLAKAS 155 (482)
Q Consensus 78 ~~~~~~~~~L~~wy~~~~r~-lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~-pt~~~La~a~ 155 (482)
++++.++....+-.+..|++ .|--.. +.....|++||+.+||.||.++....+..++.+.. -|++++.+++
T Consensus 46 ~~ir~mR~k~~APVD~mGc~~~~~~~~-------~pk~~RfqvLv~lmLSSQTKDevt~~Am~rL~~~~gLT~e~v~~~d 118 (286)
T KOG1921|consen 46 ERIRKMRSKIVAPVDTMGCSRIPSLKA-------DPKERRFQVLVGLMLSSQTKDEVTAAAMLRLKEYGGLTLEAVLKID 118 (286)
T ss_pred HHHHHHhhcccCCccccccccCccccC-------ChhhHhHHHHHHHHHhcchHHHHHHHHHHHHHHhcCCCHHHHhccC
Confidence 45666676666666666663 332111 11345799999999999999999999999999987 8999999999
Q ss_pred HHHHHHHHhccCcHH-HHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHhhcCC-eeeeecCchhhhHHh
Q 011579 156 LEEVNEMWAGLGYYR-RARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKE-VVPVVDGNVIRVLAR 232 (482)
Q Consensus 156 ~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~-~g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~-p~~~vD~~v~Rvl~R 232 (482)
+..|.++|.++|||+ ||+||+.+|+.+.++ +|++|++.++|++|||||||+|..+|..|+|. ..+.||+||+|+.+|
T Consensus 119 e~~l~~LI~~VgFy~rKA~ylkkta~IL~d~f~gDIP~~v~dLlsLPGVGPKMa~L~m~~AWn~i~GI~VDtHVHRi~nr 198 (286)
T KOG1921|consen 119 EPTLNELIYPVGFYTRKAKYLKKTAKILQDKFDGDIPDTVEDLLSLPGVGPKMAHLTMQVAWNKIVGICVDTHVHRICNR 198 (286)
T ss_pred hHhHHhhhhhccchHHHHHHHHHHHHHHHHHhCCCCchhHHHHhcCCCCchHHHHHHHHHHhccceeEEeehHHHHHHHH
Confidence 999999999999999 899999999999998 89999999999999999999999999999998 478899999999999
Q ss_pred hhcccCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhhhhccCCCCCCCCCCC-cccChhhh
Q 011579 233 LKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPV-SDKCQAYS 297 (482)
Q Consensus 233 l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl-~~~C~~~~ 297 (482)
++|++...+ +..+....++.++|.+.|.++|..|+.||+.||+|++|+|+.|-+ ++.|++.-
T Consensus 199 lgWv~~ktk---spE~TR~aLq~wLPk~lW~eIN~lLVGFGQ~iC~p~~prC~~C~~~~~~Cpss~ 261 (286)
T KOG1921|consen 199 LGWVDTKTK---SPEQTRVALQQWLPKSLWVEINHLLVGFGQTICTPRRPRCGLCLLSRDLCPSSF 261 (286)
T ss_pred hcccccccC---CHHHHHHHHHHhCcHHHHhhhhceeecccceeeecCCCCccccccCcccCchhh
Confidence 999984332 234455667889999999999999999999999999999999999 69999854
No 11
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=99.97 E-value=4.3e-30 Score=239.23 Aligned_cols=200 Identities=24% Similarity=0.382 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhC-CCHHHHHhCCH
Q 011579 78 KEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKW-PTIHHLAKASL 156 (482)
Q Consensus 78 ~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~-pt~~~La~a~~ 156 (482)
..+..+.+.|...|+.. -|+.. .+-++++|++||.|+|++++|..+..++.... -++++|...+.
T Consensus 6 ~~~~~iy~~L~~~yg~q----~WWp~----------~~~~EiiigAILtQNT~WknvekAlenLk~~~~~~l~~I~~~~~ 71 (215)
T COG2231 6 ENITKIYKELLRLYGDQ----GWWPA----------DNKDEIIIGAILTQNTSWKNVEKALENLKNEGILNLKKILKLDE 71 (215)
T ss_pred HHHHHHHHHHHHHcCCc----cCCCC----------CCchhHHHHHHHhccccHHHHHHHHHHHHHcccCCHHHHhcCCH
Confidence 34556777787777754 38874 34569999999999999999999999998764 58999999999
Q ss_pred HHHHHHHhccCcHH-HHHHHHHHHHHHHHcC---CCCCC--chhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhhhH
Q 011579 157 EEVNEMWAGLGYYR-RARFLLEGAKMIVAEG---DGFPN--TVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVL 230 (482)
Q Consensus 157 eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~---g~~p~--~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl 230 (482)
++|+++|++.|||+ ||++|+++.+.++... +.+-+ .+++|++++|||+.|||+||++|+++|+|+||.+.+|++
T Consensus 72 ~~L~elIrpsGFYnqKa~rLk~l~k~l~~~~~~~~~~~~~~~R~~LL~iKGIG~ETaDsILlYa~~rp~FVvD~Yt~R~l 151 (215)
T COG2231 72 EELAELIRPSGFYNQKAKRLKALSKNLAKFFINLESFKSEVLREELLSIKGIGKETADSILLYALDRPVFVVDKYTRRLL 151 (215)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHccCCcchhhHHHHHHHHhcCcccchhHHHHHHH
Confidence 99999999999999 9999988888887752 22222 489999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCChHHHHHHHHHHHhhcCCCC--hhHHHHHHHHHhhhhccCCCCCCCCCCCcccChhhh
Q 011579 231 ARLKAISANPKDTSTVKNFWKLATQLVDSCR--PGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYS 297 (482)
Q Consensus 231 ~Rl~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~ 297 (482)
.|+|++..+ ++. ++.+..+.-++.+. +..||..++.||+.+|+. +|.|+.|||...|.+++
T Consensus 152 ~rlg~i~~k--~yd---eik~~fe~~l~~~~~lyqe~HAlIv~~~K~f~~k-~~~~~~cpL~~~~~~~~ 214 (215)
T COG2231 152 SRLGGIEEK--KYD---EIKELFEENLPENLRLYQEFHALIVEHAKHFCKK-KPLCEKCPLKEKCKKYR 214 (215)
T ss_pred HHhcccccc--cHH---HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHccC-CcCCCCchHHHHHhhcc
Confidence 999998754 233 34444555455443 689999999999999998 59999999999998874
No 12
>smart00478 ENDO3c endonuclease III. includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=99.96 E-value=1.3e-28 Score=224.23 Aligned_cols=146 Identities=34% Similarity=0.506 Sum_probs=136.2
Q ss_pred HhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCC
Q 011579 125 MLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGI 202 (482)
Q Consensus 125 l~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~-~g~~p~~~~~L~~lpGI 202 (482)
|+|||+++++..++.+|.+.||||++|++++.++|.++|+++||++ ||++|+++|+.+.+. +|.+|++++.|++||||
T Consensus 1 l~qq~~~~~a~~~~~~l~~~~~~~~~l~~~~~~eL~~~l~~~g~~~~ka~~i~~~a~~~~~~~~~~~~~~~~~L~~l~GI 80 (149)
T smart00478 1 LSQQTSDEAVNKATERLFEKFPTPEDLAAADEEELEELIRPLGFYRRKAKYLIELARILVEEYGGEVPDDREELLKLPGV 80 (149)
T ss_pred CCCcccHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHCCCccHHHHHHHcCCCC
Confidence 6899999999999999999999999999999999999999999998 999999999999987 78899999999999999
Q ss_pred cHHHHHHHHHhhcCCeeeeecCchhhhHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhh
Q 011579 203 GNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGA 274 (482)
Q Consensus 203 G~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~ 274 (482)
|+|||++|++|++++++++||+||.|++.|+|+++..+ +.+.++..++.++|.+.|+.+|++++++|+
T Consensus 81 G~~tA~~~l~~~~~~~~~~~D~~v~r~~~rl~~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~~l~~g~ 148 (149)
T smart00478 81 GRKTANAVLSFALGKPFIPVDTHVLRIAKRLGLVDKKS----TPEEVEKLLEKLLPKEDWRELNLLLIDFGR 148 (149)
T ss_pred cHHHHHHHHHHHCCCCCCccchHHHHHHHHhCCCCCCC----CHHHHHHHHHHHCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999886422 345688888999998889999999999997
No 13
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=99.95 E-value=6.3e-28 Score=221.67 Aligned_cols=153 Identities=37% Similarity=0.499 Sum_probs=138.3
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHHhC-CCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHc-CCCC---CC
Q 011579 117 YGVWVSEVMLQQTRVQTVIDYYNRWMTKW-PTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAE-GDGF---PN 191 (482)
Q Consensus 117 f~~lVs~Il~Qqt~~~~v~~~~~~l~~~~-pt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~-~g~~---p~ 191 (482)
|++||++||+|||+++++..++.+|.+.| |||++|+.++.++|.+++.++||.+||++|+++|+.+.++ .+.. ++
T Consensus 1 ~e~Li~~il~q~~s~~~a~~~~~~l~~~~gpt~~~l~~~~~~~l~~~~~~~G~~~kA~~i~~~a~~~~~~~~~~~~~~~~ 80 (158)
T cd00056 1 FEVLVSEILSQQTTDKAVNKAYERLFERYGPTPEALAAADEEELRELIRSLGYRRKAKYLKELARAIVEGFGGLVLDDPD 80 (158)
T ss_pred CHHHHHHHHHhcccHHHHHHHHHHHHHHhCCCHHHHHCCCHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCccCCCcc
Confidence 68999999999999999999999999999 9999999999999999999999434999999999999997 3333 78
Q ss_pred chhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHH
Q 011579 192 TVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLME 271 (482)
Q Consensus 192 ~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~ 271 (482)
.++.|++|||||+|||+++++|++|.+++++|+|+.|++.|+|++...+ +.+++++.++.+.|......+|+.|++
T Consensus 81 ~~~~L~~l~GIG~~tA~~~l~~~~~~~~~pvD~~v~r~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (158)
T cd00056 81 AREELLALPGVGRKTANVVLLFALGPDAFPVDTHVRRVLKRLGLIPKKK----TPEELEELLEELLPKPYWGEANQALMD 156 (158)
T ss_pred cHHHHHcCCCCCHHHHHHHHHHHCCCCCCccchhHHHHHHHhCCCCCCC----CHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 8999999999999999999999999889999999999999999874322 345688888889987778999999999
Q ss_pred Hh
Q 011579 272 LG 273 (482)
Q Consensus 272 ~G 273 (482)
||
T Consensus 157 ~g 158 (158)
T cd00056 157 LG 158 (158)
T ss_pred cC
Confidence 87
No 14
>PRK01229 N-glycosylase/DNA lyase; Provisional
Probab=99.92 E-value=2.8e-24 Score=205.05 Aligned_cols=121 Identities=20% Similarity=0.235 Sum_probs=108.0
Q ss_pred cCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccC--cHH-HHHHHHHHHHH---HHHc-
Q 011579 113 EKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLG--YYR-RARFLLEGAKM---IVAE- 185 (482)
Q Consensus 113 ~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~eel~~~i~~lG--~~~-RA~~L~~~a~~---i~~~- 185 (482)
..|||+.||++||+|||+++++..++.+| +++.+ .++.++|+++|+++| ||+ ||++|+++++. +.+.
T Consensus 34 ~~~~f~~Lv~~ILsqnT~~~~v~~a~~~L-----~~~~l-~~~~eeL~~~Ir~~Gygf~~~KAk~I~~~~~~~~~l~~~~ 107 (208)
T PRK01229 34 EEDLFSELSFCILTANSSAEGGIKAQKEI-----GDGFL-YLSEEELEEKLKEVGHRFYNKRAEYIVEARKLYGKLKEII 107 (208)
T ss_pred cCChHHHHHHHHhcCcCcHHHHHHHHHhc-----CHHHc-CCCHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999998 35667 899999999999995 999 99999999987 4333
Q ss_pred --CCCCCCchhhhh-cCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhhcccCC
Q 011579 186 --GDGFPNTVSDLR-KVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISAN 239 (482)
Q Consensus 186 --~g~~p~~~~~L~-~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~~~~~ 239 (482)
++++|+++++|+ +|||||+|||++||.....+|+++||+||+|++.|+|+++..
T Consensus 108 ~~~~~~~~~R~~Ll~~lpGIG~KTAd~vL~~~~~~~~~iVDtHv~Ri~~RlG~~~~~ 164 (208)
T PRK01229 108 KADKDQFEAREFLVKNIKGIGYKEASHFLRNVGYEDLAILDRHILRFLKRYGLIEEI 164 (208)
T ss_pred hccCCchHHHHHHHHcCCCCcHHHHHHHHHHccCCCeeeeeHHHHHHHHHhCCCccc
Confidence 567899999999 999999999999996554489999999999999999998753
No 15
>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg). All proteins in this family for which functions are known are 8-oxo-guanaine DNA glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is distantly realted to the Nth-MutY superfamily.
Probab=99.91 E-value=5.9e-24 Score=215.83 Aligned_cols=154 Identities=18% Similarity=0.276 Sum_probs=126.0
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHH---------------hCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHH
Q 011579 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMT---------------KWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEG 178 (482)
Q Consensus 114 ~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~---------------~~pt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~ 178 (482)
.||||++|++|++||+++.++..++.+|.+ .||||++|+.++.++ .|+.+|+..||++|+++
T Consensus 117 ~d~fE~lv~~IlsQq~si~~a~~~~~rL~~~~G~~~~~~~g~~~~~FPtp~~La~~~~e~---~Lr~~G~g~Ra~~I~~~ 193 (310)
T TIGR00588 117 QDPFECLISFICSSNNNIARITRMVERLCQAFGPRLITLDGVTYHGFPSLHALTGPEAEA---HLRKLGLGYRARYIRET 193 (310)
T ss_pred CCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHHhCCChHH---HHHHcCCHHHHHHHHHH
Confidence 479999999999999999999999999964 489999999977654 36788996699999999
Q ss_pred HHHHHHcC-CC----------CCCchhhhhcCCCCcHHHHHHHHHhhcCCe-eeeecCchhhhHHhhhcccCCC-----C
Q 011579 179 AKMIVAEG-DG----------FPNTVSDLRKVPGIGNYTAGAIASIAFKEV-VPVVDGNVIRVLARLKAISANP-----K 241 (482)
Q Consensus 179 a~~i~~~~-g~----------~p~~~~~L~~lpGIG~~TA~~il~fa~~~p-~~~vD~~v~Rvl~Rl~~~~~~~-----~ 241 (482)
|+.+.++. |. +++.+++|++|||||+|||++|++|++|+| ++|||+||+|++.|+++..... .
T Consensus 194 A~~i~~~~~~~~~l~~l~~~~~~~~~~~L~~l~GIG~~tAd~vll~~l~~~d~~PvD~~v~r~~~r~y~~~~~~~~~~~~ 273 (310)
T TIGR00588 194 ARALLEEQGGRAWLQQIRGASYEDAREALCELPGVGPKVADCICLMGLDKPQAVPVDVHVWRIANRDYPWHPKTSRAKGP 273 (310)
T ss_pred HHHHHhccCCchhHHhhccCChHHHHHHHHhCCCccHHHHHHHHHHhCCCCCceeecHHHHHHHHHHhcccccccccccC
Confidence 99999873 32 346789999999999999999999999997 7889999999999998764322 1
Q ss_pred ChHHHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 011579 242 DTSTVKNFWKLATQLVDSCRPGDFNQSLMEL 272 (482)
Q Consensus 242 ~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~ 272 (482)
.....+++++.+...+++ ++.|+|+++-+
T Consensus 274 ~~~~~~~i~~~~~~~~g~--~ag~aq~~lf~ 302 (310)
T TIGR00588 274 SPFARKELGNFFRSLWGP--YAGWAQAVLFS 302 (310)
T ss_pred ChhHHHHHHHHHHHHhcC--cchHHHHHHHH
Confidence 234567788877777763 66666665544
No 16
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=99.85 E-value=3.8e-21 Score=167.15 Aligned_cols=109 Identities=34% Similarity=0.501 Sum_probs=74.6
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
+.+|++||.|||++|+|+||||||..++++..+ .+++.+.+.+.+|+.+. ..+.++.++|+|||++++++
T Consensus 6 ~~~~~~Ll~kRp~~gll~GLwefP~~e~~~~~~----~~~l~~~~~~~~~~~~~------~~~~~~~v~H~fSH~~~~~~ 75 (114)
T PF14815_consen 6 RSQGRVLLEKRPEKGLLAGLWEFPLIESDEEDD----EEELEEWLEEQLGLSIR------SVEPLGTVKHVFSHRRWTIH 75 (114)
T ss_dssp ETTSEEEEEE--SSSTTTT-EE--EEE-SSS-C----HHHHHHHTCCSSS-EEE------E-S-SEEEEEE-SSEEEEEE
T ss_pred EeCCEEEEEECCCCChhhcCcccCEeCccCCCC----HHHHHHHHHHHcCCChh------hheecCcEEEEccceEEEEE
Confidence 678999999999999999999999998874432 45666667667777654 45689999999999999999
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHh
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMM 469 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~ 469 (482)
+|.+.+ .+... ....+++|++.+++++||||.+++||++
T Consensus 76 ~~~~~~--~~~~~-------~~~~~~~W~~~~~l~~~~~p~~~~kil~ 114 (114)
T PF14815_consen 76 VYEVEV--SADPP-------AEPEEGQWVSLEELDQYPLPTPMRKILE 114 (114)
T ss_dssp EEEEEE--E-SS-----------TTEEEEEGGGGGGS---HHHHHHH-
T ss_pred EEEEEe--cCCCC-------CCCCCcEEEEHHHHhhCCCCHHHHHHhC
Confidence 999864 33211 1245789999999999999999999985
No 17
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.84 E-value=1.3e-20 Score=165.60 Aligned_cols=115 Identities=18% Similarity=0.117 Sum_probs=97.1
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
+.+|++|+.||+++|+|+|+|+||||+++.+|++ ++++.||+.||+|+++. ....++.+.|.|+|+++.++
T Consensus 13 ~~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~---~~~~~RE~~EE~g~~~~------~~~~~~~~~h~~~~~~~~~~ 83 (128)
T TIGR00586 13 NENGEIIITRRADGHMFAKLLEFPGGKEEGGETP---EQAVVRELEEEIGIPQH------FSEFEKLEYEFYPRHITLWF 83 (128)
T ss_pred CCCCEEEEEEEeCCCCCCCeEECCCcccCCCCCH---HHHHHHHHHHHHCCcce------eeeEEEEEEEECCCcEEEEE
Confidence 5678999999999999999999999999988877 78899999999999875 45568889999999999999
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccC
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKS 472 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~ 472 (482)
+|.+.. .++.. ...+..+++|++++++.+++||++++++++.+.
T Consensus 84 ~~~~~~--~~~~~-----~~~~~~~~~W~~~~~l~~~~~p~~~~~~~~~~~ 127 (128)
T TIGR00586 84 WLLERW--EGGPP-----GKEGQPEEWWVLVGLLADDFFPAANPVIIKLLR 127 (128)
T ss_pred EEEEEE--cCCCc-----CcccccccEEeCHHHCCccCCCCCCHHHHHHHh
Confidence 988753 33221 123456789999999999999999999998764
No 18
>TIGR03252 uncharacterized HhH-GPD family protein. This model describes a small, well-conserved bacterial protein family. Its sequence largely consists of a domain, HhH-GPD, found in a variety of related base excision DNA repair enzymes (see pfam00730).
Probab=99.84 E-value=1.4e-20 Score=174.45 Aligned_cols=103 Identities=13% Similarity=0.187 Sum_probs=94.0
Q ss_pred cCChHHHHHHHHHhhhccHHHHHHHHHHHHHhC--CCHHHHHhCCHHHHHHHHhcc----CcHH-HHHHHHHHHHHHHHc
Q 011579 113 EKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKW--PTIHHLAKASLEEVNEMWAGL----GYYR-RARFLLEGAKMIVAE 185 (482)
Q Consensus 113 ~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~--pt~~~La~a~~eel~~~i~~l----G~~~-RA~~L~~~a~~i~~~ 185 (482)
..+||++||++||+|||++++|..++.+++.++ +||++|++++.++|+++|++. |||+ ||++|+++|+.|+++
T Consensus 15 ~~~pFelLVa~ILSQqTtd~nv~kA~~~L~~~~g~~tp~~La~a~~eeL~~lI~~~pal~Gfy~~KAk~Lk~~a~~iie~ 94 (177)
T TIGR03252 15 SSDPFALLTGMLLDQQVPMERAFAGPHKIARRMGSLDAEDIAKYDPQAFVALFSERPAVHRFPGSMAKRVQALAQYVVDT 94 (177)
T ss_pred cCChHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCHHHHHcCCHHHHHHHHhcCccccCchHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999998765 699999999999999999866 9999 999999999999987
Q ss_pred -CCCC--------CCc---hhhhhcCCCCcHHHHHHHHHhhc
Q 011579 186 -GDGF--------PNT---VSDLRKVPGIGNYTAGAIASIAF 215 (482)
Q Consensus 186 -~g~~--------p~~---~~~L~~lpGIG~~TA~~il~fa~ 215 (482)
+|.+ |++ +++|++|||||++||++||.+.-
T Consensus 95 y~G~v~~L~~~~~p~t~~lre~Ll~LpGVG~KTAnvVL~~l~ 136 (177)
T TIGR03252 95 YDGDATAVWTEGDPDGKELLRRLKALPGFGKQKAKIFLALLG 136 (177)
T ss_pred hCCChhhhhcccCCCcHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 7775 776 68999999999999999999643
No 19
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.84 E-value=1.7e-20 Score=162.05 Aligned_cols=108 Identities=38% Similarity=0.546 Sum_probs=87.0
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
..+|++||+|||++|+|+||||||+++++.+++. ++++.+++.+++++. ...+++++|+|||++++++
T Consensus 11 ~~~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~~~~~~~H~fth~~~~~~ 78 (118)
T cd03431 11 RNDGRVLLEKRPEKGLLAGLWEFPSVEWEEEADG---EEALLSALKKALRLS---------LEPLGTVKHTFTHFRLTLH 78 (118)
T ss_pred ecCCeEEEEECCCCCCCCcceeCCCccccCCcCH---HHHHHHHHHHHhCcc---------cccceeEEEecCCeEEEEE
Confidence 3468999999999999999999999998877554 678888887666531 1347899999999999999
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
+|.+.+ .++. .+..+++|++.+++..++||++++|+++.+
T Consensus 79 ~~~~~~--~~~~--------~~~~~~~W~~~eel~~~~~p~~~~kil~~~ 118 (118)
T cd03431 79 VYLARL--EGDL--------LAPDEGRWVPLEELDEYALPTVMRKILELL 118 (118)
T ss_pred EEEEEE--eCCC--------cCccccEEccHHHHhhCCCCHHHHHHHHhC
Confidence 998853 2211 124568999999999999999999999753
No 20
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.83 E-value=5.7e-20 Score=163.59 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=97.6
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
..+|+||+.||+.+|.|+|+|+||||+++.+|++ .+|+.||+.||+|+++. ....++.+.|.|+|+.++++
T Consensus 12 ~~~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~---~~a~~RE~~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~~ 82 (135)
T PRK10546 12 ERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQ---PQALIRELREELGIEAT------VGEYVASHQREVSGRRIHLH 82 (135)
T ss_pred ecCCEEEEEEccCCCCCCCcEECCcccCCCCCCH---HHHHHHHHHHHHCCccc------cceeEEEEEEecCCcEEEEE
Confidence 3568999999999999999999999999999877 78999999999999975 44567889999999999999
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccCC
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKSP 473 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~ 473 (482)
+|.+.. ..+. ....++.+++|++++++.+++++++++++++.+..
T Consensus 83 ~~~~~~-~~~~------~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 127 (135)
T PRK10546 83 AWHVPD-FHGE------LQAHEHQALVWCTPEEALRYPLAPADIPLLEAFMA 127 (135)
T ss_pred EEEEEE-ecCc------ccccccceeEEcCHHHcccCCCCcCcHHHHHHHHH
Confidence 887752 2231 12245778999999999999999999999988743
No 21
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.82 E-value=8e-20 Score=160.32 Aligned_cols=114 Identities=14% Similarity=0.190 Sum_probs=95.2
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
+.+|++|+.||+.+++|+|+|+||||+++++|+. ++++.||+.||+|+++. ....++.+.|.|+|..++++
T Consensus 13 ~~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~---~~a~~Re~~EE~gl~~~------~~~~~~~~~~~~~~~~~~~~ 83 (129)
T PRK10776 13 NPNNEIFITRRAADAHMAGKWEFPGGKIEAGETP---EQALIRELQEEVGITVQ------HATLFEKLEYEFPDRHITLW 83 (129)
T ss_pred CCCCEEEEEEecCCCCCCCeEECCceecCCCCCH---HHHHHHHHHHHHCCcee------cceEEEEEEeeCCCcEEEEE
Confidence 5578999999999999999999999999998876 78999999999998865 33457788999999999999
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
+|.+.. ..+. +...+..+++|++.+++..++||++++++++.+
T Consensus 84 ~~~~~~-~~~~------~~~~e~~~~~W~~~~~l~~~~~p~~~~~~~~~~ 126 (129)
T PRK10776 84 FWLVES-WEGE------PWGKEGQPGRWVSQVALNADEFPPANEPIIAKL 126 (129)
T ss_pred EEEEEE-ECCc------cCCccCCccEEecHHHCccCCCCcccHHHHHHH
Confidence 887752 2221 112456778999999999999999999999876
No 22
>COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=99.79 E-value=7.5e-19 Score=176.18 Aligned_cols=136 Identities=21% Similarity=0.303 Sum_probs=111.7
Q ss_pred cCChHHHHHHHHHhhhccHHHHHHHHHHHHHh----------CCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHH
Q 011579 113 EKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTK----------WPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKM 181 (482)
Q Consensus 113 ~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~----------~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~ 181 (482)
..|||+.||++|++||.+++++..++.+|.+. ||||++|++++++.+ +.+|+.. ||++|+++|+.
T Consensus 102 ~~d~fe~lv~aI~~QqvS~~~A~~i~~rl~~~~g~~~~~~~~fptpe~l~~~~~~~l----~~~g~s~~Ka~yi~~~A~~ 177 (285)
T COG0122 102 APDPFEALVRAILSQQVSVAAAAKIWARLVSLYGNALEIYHSFPTPEQLAAADEEAL----RRCGLSGRKAEYIISLARA 177 (285)
T ss_pred CCCHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhCCccccccCCCCHHHHHhcCHHHH----HHhCCcHHHHHHHHHHHHH
Confidence 47999999999999999999999999999753 799999999999886 5789988 99999999999
Q ss_pred HHHcCCC--------CCCchhhhhcCCCCcHHHHHHHHHhhcCCe-ee-eecCchhhhHHhhhcccCCCCChHHHHHHHH
Q 011579 182 IVAEGDG--------FPNTVSDLRKVPGIGNYTAGAIASIAFKEV-VP-VVDGNVIRVLARLKAISANPKDTSTVKNFWK 251 (482)
Q Consensus 182 i~~~~g~--------~p~~~~~L~~lpGIG~~TA~~il~fa~~~p-~~-~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~ 251 (482)
+.++.-. ..+.++.|++|+|||+|||+++|+|++|++ ++ +.|.+++|.+.+++..+..+ +.+.+..
T Consensus 178 ~~~g~~~~~~l~~~~~e~a~e~L~~i~GIG~WTAe~~llf~lgr~dvfP~~D~~lr~~~~~~~~~~~~~----~~~~~~~ 253 (285)
T COG0122 178 AAEGELDLSELKPLSDEEAIEELTALKGIGPWTAEMFLLFGLGRPDVFPADDLGLRRAIKKLYRLPTRP----TEKEVRE 253 (285)
T ss_pred HHcCCccHHHhccCCHHHHHHHHHcCCCcCHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhcCCCCc----hHHHHHH
Confidence 9985211 124689999999999999999999999986 44 49999999999998433322 2333455
Q ss_pred HHHhh
Q 011579 252 LATQL 256 (482)
Q Consensus 252 ~~~~l 256 (482)
.++.+
T Consensus 254 ~~e~w 258 (285)
T COG0122 254 LAERW 258 (285)
T ss_pred HHhcc
Confidence 55544
No 23
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=99.78 E-value=8.7e-19 Score=175.81 Aligned_cols=140 Identities=19% Similarity=0.147 Sum_probs=109.7
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHh-------------CCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHH
Q 011579 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTK-------------WPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGA 179 (482)
Q Consensus 114 ~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~-------------~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a 179 (482)
.||||.+|++|++||.++..+.....++.++ ||||++|++++.++| +++|+++ ||++|+++|
T Consensus 111 ~d~fE~lv~aIigQqisv~~a~~~~~rlv~~~G~~l~~~~~~~~FPtpe~La~~~~~eL----~~~Gl~~~Ra~~L~~lA 186 (283)
T PRK10308 111 VDAFEQGVRAILGQLVSVAMAAKLTAKVAQLYGERLDDFPEYVCFPTPERLAAADPQAL----KALGMPLKRAEALIHLA 186 (283)
T ss_pred CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCccccCCCCccCCCCHHHHHcCCHHHH----HHCCCCHHHHHHHHHHH
Confidence 5799999999999999999999888887543 799999999999986 5789988 999999999
Q ss_pred HHHHHc--CCC----CCCchhhhhcCCCCcHHHHHHHHHhhcCCe-e-eeecCchhhhHHhhhcccCCCCChHHHHHHHH
Q 011579 180 KMIVAE--GDG----FPNTVSDLRKVPGIGNYTAGAIASIAFKEV-V-PVVDGNVIRVLARLKAISANPKDTSTVKNFWK 251 (482)
Q Consensus 180 ~~i~~~--~g~----~p~~~~~L~~lpGIG~~TA~~il~fa~~~p-~-~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~ 251 (482)
+.+.++ ... ..+.+++|++|||||+|||++|++|++|++ + +++|.+++|.+ .. . +.+++.+
T Consensus 187 ~~i~~g~l~l~~~~~~~~~~~~L~~LpGIGpwTA~~vllr~lg~~D~fp~~D~~l~~~~---~~----~----~~~~~~~ 255 (283)
T PRK10308 187 NAALEGTLPLTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRF---PG----M----TPAQIRR 255 (283)
T ss_pred HHHHcCCCCccccCCHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCCCCcccHHHHHhc---cc----C----CHHHHHH
Confidence 999984 111 123578999999999999999999999996 4 48999999854 21 1 2345666
Q ss_pred HHHhhcCCCChhHHHHH
Q 011579 252 LATQLVDSCRPGDFNQS 268 (482)
Q Consensus 252 ~~~~l~~~~~~~~~~~~ 268 (482)
.++.+-|-..+..+|.+
T Consensus 256 ~a~~w~P~rsya~~~LW 272 (283)
T PRK10308 256 YAERWKPWRSYALLHIW 272 (283)
T ss_pred HHHhcCCHHHHHHHHHH
Confidence 66665444334444443
No 24
>PRK08999 hypothetical protein; Provisional
Probab=99.74 E-value=1.8e-17 Score=168.48 Aligned_cols=118 Identities=17% Similarity=0.286 Sum_probs=99.7
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
+.+|++|+.||+.+++|+|+|+||||+++.+|+. .+++.||+.||+|+.+. ....+..+.|.|+|..++++
T Consensus 14 ~~~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~---~~aa~RE~~EE~Gl~~~------~~~~l~~~~h~~~~~~~~i~ 84 (312)
T PRK08999 14 DADGRILLARRPEGKHQGGLWEFPGGKVEPGETV---EQALARELQEELGIEVT------AARPLITVRHDYPDKRVRLD 84 (312)
T ss_pred CCCCeEEEEEecCCCCCCCeEECCccCCCCCCCH---HHHHHHHHHHHhCCcee------cceeEEEEEEEcCCCeEEEE
Confidence 5578999999999999999999999999998876 78999999999999875 33557789999999999999
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccCCCC
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKSPPI 475 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~ 475 (482)
+|.+.. ..+. +++.++.+++|++.+++.+++||++++++++.|..|.
T Consensus 85 ~y~~~~-~~~~------~~~~e~~~~~Wv~~~el~~~~~~~~~~~i~~~l~lp~ 131 (312)
T PRK08999 85 VRRVTA-WQGE------PHGREGQPLAWVAPDELAVYPFPPANQPIVRALRLPD 131 (312)
T ss_pred EEEEEE-ecCc------ccCccCCccEEecHHHcccCCCCcchHHHHHHhcCCC
Confidence 997752 2221 2234677899999999999999999999999997663
No 25
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.73 E-value=2.4e-17 Score=142.82 Aligned_cols=115 Identities=20% Similarity=0.289 Sum_probs=96.4
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
+.+|++|+.||+.+++++|+|+||||.++++|++ ++++.||+.||+|+++. ....++.+.|.|+|.++.++
T Consensus 10 ~~~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~---~~~a~Re~~EE~g~~~~------~~~~~~~~~~~~~~~~~~~~ 80 (124)
T cd03425 10 DDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETP---EQALVRELREELGIEVE------VGELLATVEHDYPDKRVTLH 80 (124)
T ss_pred CCCCEEEEEEeCCCCCCCCeEeCCCcccCCCCCH---HHHHHHHHHHhhCcEEe------ccceEEEEEeeCCCCeEEEE
Confidence 4568999999998889999999999999988877 78889999999998875 34678899999999999999
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccC
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKS 472 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~ 472 (482)
+|.+.. .++.. ...+...+.|++.+++..++||++++++++.|+
T Consensus 81 ~~~~~~--~~~~~-----~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 124 (124)
T cd03425 81 VFLVEL--WSGEP-----QLLEHQELRWVPPEELDDLDFPPADVPIVAALQ 124 (124)
T ss_pred EEEEee--eCCCc-----ccccCceEEEeeHHHcccCCCCcccHHHHHhhC
Confidence 888753 22211 124567899999999999999999999998763
No 26
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair]
Probab=99.69 E-value=5.4e-17 Score=157.38 Aligned_cols=121 Identities=18% Similarity=0.334 Sum_probs=107.4
Q ss_pred hhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHH---------------hCCCHHHHHhCCHHHHHHHHhccCcHHHHHH
Q 011579 110 EEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMT---------------KWPTIHHLAKASLEEVNEMWAGLGYYRRARF 174 (482)
Q Consensus 110 ~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~---------------~~pt~~~La~a~~eel~~~i~~lG~~~RA~~ 174 (482)
+.+.+||++.|+|.|.|++.+.+++....++|.. .|||.+.|+. .+++..+|.+||..||||
T Consensus 111 RlLrQdP~E~lfSFiCSSNNNIaRIT~Mve~fc~~fG~~i~~~dg~~~h~FPsl~~L~g---~~~Ea~LR~~gfGYRAkY 187 (323)
T KOG2875|consen 111 RLLRQDPIECLFSFICSSNNNIARITGMVERFCQAFGPRIIQLDGVDYHGFPSLQALAG---PEVEAELRKLGFGYRAKY 187 (323)
T ss_pred HHHhcCcHHHHHHHHhcCCCcHHHHHHHHHHHHHhhCcceEeecCcccccCccHHHhcC---cHhHHHHHHcCcchhHHH
Confidence 5678999999999999999999999999988854 3899999986 667777899999889999
Q ss_pred HHHHHHHHHHcCCC-----------CCCchhhhhcCCCCcHHHHHHHHHhhcCCe-eeeecCchhhhHHhh
Q 011579 175 LLEGAKMIVAEGDG-----------FPNTVSDLRKVPGIGNYTAGAIASIAFKEV-VPVVDGNVIRVLARL 233 (482)
Q Consensus 175 L~~~a~~i~~~~g~-----------~p~~~~~L~~lpGIG~~TA~~il~fa~~~p-~~~vD~~v~Rvl~Rl 233 (482)
|...|++|+++.|. +.+.++.|+.|||||+|+||||++++++.. +++||+||.|+++-+
T Consensus 188 I~~ta~~l~~~~g~~~wLqsl~~~~yeear~~L~~lpGVG~KVADCI~Lm~l~~~~~VPVDvHi~ria~~y 258 (323)
T KOG2875|consen 188 ISATARALQEKQGGLAWLQSLRKSSYEEAREALCSLPGVGPKVADCICLMSLDKLSAVPVDVHIWRIAQDY 258 (323)
T ss_pred HHHHHHHHHHhcccchHHHHHhcccHHHHHHHHhcCCCCcchHhhhhhhhhcCCCCcccchhhHHHHhhcc
Confidence 99999999998443 346789999999999999999999999985 889999999999944
No 27
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=99.69 E-value=1.1e-16 Score=137.88 Aligned_cols=91 Identities=35% Similarity=0.548 Sum_probs=80.9
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHh--CCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhhh
Q 011579 121 VSEVMLQQTRVQTVIDYYNRWMTK--WPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDLR 197 (482)
Q Consensus 121 Vs~Il~Qqt~~~~v~~~~~~l~~~--~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~ 197 (482)
|++||+|||+++++.+++.+|++. ||||++|+++++++|.++|+++||++ ||++|+++|+.+.
T Consensus 1 V~~Il~qq~s~~~a~~~~~~l~~~~g~pt~~~l~~~~~~el~~~i~~~G~~~~ka~~i~~~a~~~~-------------- 66 (108)
T PF00730_consen 1 VRAILSQQTSIKAARKIYRRLFERYGFPTPEALAEASEEELRELIRPLGFSRRKAKYIIELARAIL-------------- 66 (108)
T ss_dssp HHHHHCTTS-HHHHHHHHHHHHHHHSCSSHHHHHCSHHHHHHHHHTTSTSHHHHHHHHHHHHHHHH--------------
T ss_pred CeeeecCcCcHHHHHHHHHHHHHHhcCCCHHHHHhCCHHHHHHHhhccCCCHHHHHHHHHHHHHhh--------------
Confidence 789999999999999999999999 59999999999999999999999997 9999999999987
Q ss_pred cCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhhcccCCCC
Q 011579 198 KVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPK 241 (482)
Q Consensus 198 ~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~~~~~~~ 241 (482)
++..+++++|+|+.|++.|+++++.+++
T Consensus 67 ----------------~~~d~~~~~D~~v~r~~~r~~~~~~~~~ 94 (108)
T PF00730_consen 67 ----------------GRPDPFPPVDTHVRRVLQRLGGIPEKKT 94 (108)
T ss_dssp ----------------C-SSSS-TTSHHHHHHHHHHTSSSSSTT
T ss_pred ----------------hcccceecCcHHHHHHHHHHcCCCCCCC
Confidence 3333689999999999999999876543
No 28
>KOG1918 consensus 3-methyladenine DNA glycosidase [Replication, recombination and repair]
Probab=99.59 E-value=5.7e-15 Score=138.97 Aligned_cols=123 Identities=20% Similarity=0.353 Sum_probs=107.7
Q ss_pred cCChHHHHHHHHHhhhccHHHHHHHHHHHHH------hCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHc
Q 011579 113 EKRAYGVWVSEVMLQQTRVQTVIDYYNRWMT------KWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAE 185 (482)
Q Consensus 113 ~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~------~~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~ 185 (482)
.+.||+-|+++|++||.+.+++..+|.||.. .||+|+.+..++.+++ +.+||+. ||-+|+.+|++..++
T Consensus 72 ~q~Pf~~LiraIlsQQLs~kAansI~~Rfvsl~~g~~~~~~pe~i~~~~~~~l----rkcG~S~rK~~yLh~lA~~~~ng 147 (254)
T KOG1918|consen 72 TQTPFERLIRAILSQQLSGKAANSIYNRFVSLCGGAEKFPTPEFIDPLDCEEL----RKCGFSKRKASYLHSLAEAYTNG 147 (254)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCchhcCcCCHHHH----HHhCcchhhHHHHHHHHHHHhcC
Confidence 4789999999999999999999999999985 4899999999999996 7889998 899999999998874
Q ss_pred CCCCCC-----------chhhhhcCCCCcHHHHHHHHHhhcCCe--eeeecCchhhhHHhhhcccCCCC
Q 011579 186 GDGFPN-----------TVSDLRKVPGIGNYTAGAIASIAFKEV--VPVVDGNVIRVLARLKAISANPK 241 (482)
Q Consensus 186 ~g~~p~-----------~~~~L~~lpGIG~~TA~~il~fa~~~p--~~~vD~~v~Rvl~Rl~~~~~~~~ 241 (482)
.+|. ..+.|..++|||+||+.++|+|+++++ .++-|..|++-++.++++..-|.
T Consensus 148 --~I~s~~~i~~mseEeL~~~LT~VKGIg~Wtv~MflIfsL~R~DVmp~dDlgir~g~k~l~gl~~~p~ 214 (254)
T KOG1918|consen 148 --YIPSKSGIEKMSEEELIERLTNVKGIGRWTVEMFLIFSLHRPDVMPADDLGIRNGVKKLLGLKPLPL 214 (254)
T ss_pred --CCCchHHHhhcCHHHHHHHHHhccCccceeeeeeeeeccCCCcccCchhhhHHHHHHHHhCCCCCCc
Confidence 3552 346688999999999999999999997 56789999999999998875443
No 29
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.54 E-value=4.4e-14 Score=127.12 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=79.9
Q ss_pred cCCCeEEEEecCC-CCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccc-cEEEEcCceE--
Q 011579 342 QPDGVFILVKRRD-EGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVG-EFVHIFSHIR-- 417 (482)
Q Consensus 342 ~~~gkvLl~KRp~-~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~-~v~H~fth~~-- 417 (482)
.++|+|||.||+. ++.++|.|+||||+++.||++ ++|+.||+.||+|+++.... ........ ...|.|.+..
T Consensus 12 ~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 87 (141)
T PRK15472 12 QNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERI---EEALRREIREELGEQLLLTE-ITPWTFRDDIRTKTYADGRKE 87 (141)
T ss_pred ecCCEEEEEEecccCCCCCCceeCCcccCCCCCCH---HHHHHHHHHHHHCCceeeee-eccccccccceeEEecCCCce
Confidence 4578999999986 568999999999999999887 89999999999998763100 00000000 1124443221
Q ss_pred -EE-E-EEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhc
Q 011579 418 -LK-V-HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMG 470 (482)
Q Consensus 418 -l~-L-~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~ 470 (482)
+. + .+|.|. ..++.. ..+.|+.+++|+++++|..++++++++.++..
T Consensus 88 ~~~~~~~~~~~~--~~~~~~----~~~~E~~~~~w~~~~el~~l~~~~~~~~~~~~ 137 (141)
T PRK15472 88 EIYMIYLIFDCV--SANRDV----KINEEFQDYAWVKPEDLVHYDLNVATRKTLRL 137 (141)
T ss_pred eEEEEEEEEEee--cCCCcc----cCChhhheEEEccHHHhccccccHHHHHHHHH
Confidence 11 1 122231 122111 12357889999999999999999999999865
No 30
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.49 E-value=1.7e-13 Score=119.70 Aligned_cols=109 Identities=19% Similarity=0.281 Sum_probs=79.1
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccc---cccEEEEcC----
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILRED---VGEFVHIFS---- 414 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~---l~~v~H~ft---- 414 (482)
+.+|++|+.||+.. |+|+||||.++.+|+. ++|+.||+.||.|+++. .... +....|.|+
T Consensus 11 ~~~~~vLl~~r~~~----~~w~lPgG~v~~~E~~---~~aa~REl~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~~ 77 (129)
T cd04676 11 DDEGRVLLIRRSDN----GLWALPGGAVEPGESP---ADTAVREVREETGLDVE------VTGLVGIYTGPVHVVTYPNG 77 (129)
T ss_pred CCCCeEEEEEecCC----CcEECCeeccCCCCCH---HHHHHHHHHHHhCceeE------eeEEEEEeecccceeecCCC
Confidence 55689999999865 8999999999999877 89999999999999874 2222 223345554
Q ss_pred --ceEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHh
Q 011579 415 --HIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMM 469 (482)
Q Consensus 415 --h~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~ 469 (482)
|..+.+. |.+. ..++... ....+..+++|++++++.++++|++++++++
T Consensus 78 ~~~~~~~~~-~~~~--~~~~~~~---~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~ 128 (129)
T cd04676 78 DVRQYLDIT-FRCR--VVGGELR---VGDDESLDVAWFDPDGLPPLLMHPSMRLRID 128 (129)
T ss_pred CcEEEEEEE-EEEE--eeCCeec---CCCCceeEEEEEChhhCccccCCHhHHHHhc
Confidence 4444433 3343 2332111 1235677899999999999999999999986
No 31
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.49 E-value=2.3e-13 Score=125.73 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=84.5
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCc------
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH------ 415 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth------ 415 (482)
+.+|+||+.||.. +..+|+|+||||+++.||+. ++|+.||+.||+|+++.. .....++...|.|+.
T Consensus 26 ~~~g~VLL~kR~~-~~~~g~W~lPGG~VE~GEt~---~~Aa~REl~EEtGl~v~~----~~~~~~~~~~~~~~~~~~~~~ 97 (159)
T PRK15434 26 NSRGEFLLGKRTN-RPAQGYWFVPGGRVQKDETL---EAAFERLTMAELGLRLPI----TAGQFYGVWQHFYDDNFSGTD 97 (159)
T ss_pred CCCCEEEEEEccC-CCCCCcEECCceecCCCCCH---HHHHHHHHHHHHCCcccc----ccceEEEEEEeecccccCCCc
Confidence 4568999999985 45789999999999999888 899999999999998631 023445555566642
Q ss_pred --eEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccC-CCChHhHHHHhc
Q 011579 416 --IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM-GLTSGVRKVMMG 470 (482)
Q Consensus 416 --~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~-~fp~a~~kil~~ 470 (482)
.++.+.+|.+.+ .++... ..+.++.+++|++++++..+ .+.+.++.++.+
T Consensus 98 ~~~~~i~~~f~~~~--~~g~~~---~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~ 150 (159)
T PRK15434 98 FTTHYVVLGFRLRV--AEEDLL---LPDEQHDDYRWLTPDALLASDNVHANSRAYFLA 150 (159)
T ss_pred cceEEEEEEEEEEe--cCCccc---CChHHeeEEEEEeHHHhhhccccCHHHHHHhcc
Confidence 245556666643 332221 22357899999999999886 788888887754
No 32
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.45 E-value=3.1e-13 Score=118.67 Aligned_cols=105 Identities=23% Similarity=0.231 Sum_probs=73.5
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
+.+|++||.||..++ .|+|+||||+++.||+. ++|+.||+.||+|+++. ....++.+.+ .+. ..+
T Consensus 9 ~~~~~vLL~~r~~~~--~~~w~lPGG~ve~gEs~---~~a~~REl~EEtGl~~~------~~~~~~~~~~--~~~--~~~ 73 (121)
T cd04669 9 NDQGEILLIRRIKPG--KTYYVFPGGGIEEGETP---EEAAKREALEELGLDVR------VEEIFLIVNQ--NGR--TEH 73 (121)
T ss_pred eCCCEEEEEEEecCC--CCcEECCceeccCCCCH---HHHHHHHHHHhhCeeEe------eeeEEEEEee--CCc--EEE
Confidence 456899999998765 68999999999999887 89999999999999875 3333333222 333 457
Q ss_pred EEEEEEEEeCCccccc--c---cccCCCCeeeeeccCCcccCCCCh
Q 011579 422 VELLVLCIKGGIDKWV--E---KQDKGTLSWKCVDGGTLASMGLTS 462 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~--~---~~~~e~~~~~Wv~~~eL~~~~fp~ 462 (482)
+|.|.. +.|...... + ....++..++|++.++|..++|.+
T Consensus 74 ~f~~~~-~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p 118 (121)
T cd04669 74 YFLARV-ISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRP 118 (121)
T ss_pred EEEEEE-ECCeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCC
Confidence 778763 333211100 0 012335568999999999999876
No 33
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.44 E-value=5.1e-13 Score=119.04 Aligned_cols=117 Identities=19% Similarity=0.079 Sum_probs=90.5
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCc--eEEEE
Q 011579 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH--IRLKV 420 (482)
Q Consensus 343 ~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth--~~l~L 420 (482)
.+|++|+.+|..++ ..|.|+||||.++.+|+. .+|+.||+.||.|+++. ....++.+.+.++. ....+
T Consensus 10 ~~~~vLL~~r~~~~-~~~~w~~PgG~ve~gEs~---~~aa~RE~~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd03427 10 DPDKVLLLNRKKGP-GWGGWNGPGGKVEPGETP---EECAIRELKEETGLTID------NLKLVGIIKFPFPGEEERYGV 79 (137)
T ss_pred ECCEEEEEEecCCC-CCCeEeCCceeCCCCCCH---HHHHHHHHHHhhCeEee------cceEEEEEEEEcCCCCcEEEE
Confidence 35899999998766 899999999999999877 89999999999999876 34566777666664 55566
Q ss_pred EEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccCCCC
Q 011579 421 HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKSPPI 475 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~ 475 (482)
++|.+.. ..+ ... ...+....+|++.+++..+++++.++.+++.+..+.
T Consensus 80 ~~f~~~~-~~~-~~~----~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~ 128 (137)
T cd03427 80 FVFLATE-FEG-EPL----KESEEGILDWFDIDDLPLLPMWPGDREWLPLMLEKN 128 (137)
T ss_pred EEEEECC-ccc-ccC----CCCccccceEEcHhhcccccCCCCcHHHHHHHhCCC
Confidence 6666642 222 111 124556789999999999999999999998886543
No 34
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.42 E-value=1.2e-12 Score=115.06 Aligned_cols=110 Identities=20% Similarity=0.233 Sum_probs=79.0
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcC-----ce
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS-----HI 416 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~ft-----h~ 416 (482)
+.+|++|+.||.. ++|.|+||||+++.+|++ ++|+.||+.||+|+++. ....+....+.|+ +.
T Consensus 11 ~~~~~iLL~r~~~---~~~~w~lPGG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~ 78 (125)
T cd04696 11 APDGRILLVRTTK---WRGLWGVPGGKVEWGETL---EEALKREFREETGLKLR------DIKFAMVQEAIFSEEFHKPA 78 (125)
T ss_pred CCCCCEEEEEccC---CCCcEeCCceeccCCCCH---HHHHHHHHHHHhCCccc------ccceEEEEEEeccCCCCCcc
Confidence 5578999999853 579999999999999887 89999999999999875 2233333344442 12
Q ss_pred EEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHh
Q 011579 417 RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMM 469 (482)
Q Consensus 417 ~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~ 469 (482)
+..+.+|.+. ..+... ....++.+++|++.+++.++++++++..+++
T Consensus 79 ~~~~~~~~~~--~~~~~~----~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~ 125 (125)
T cd04696 79 HFVLFDFFAR--TDGTEV----TPNEEIVEWEWVTPEEALDYPLNSFTRLLLE 125 (125)
T ss_pred EEEEEEEEEE--ecCCcc----cCCcccceeEEECHHHHhcCCCCHHHHHHhC
Confidence 3333444443 233211 1225788899999999999999999998764
No 35
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.41 E-value=1.7e-12 Score=113.67 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=83.3
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCc------eE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH------IR 417 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth------~~ 417 (482)
++++|+.||.... .+|.|+||||.++.||+. ++|+.||+.||.|+++. ....++.+.|.|.. .+
T Consensus 10 ~~~vLl~~~~~~~-~~~~w~lPgG~ve~gE~~---~~aa~RE~~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04684 10 DGKLLLIQKNGGP-YEGRWDLPGGGIEPGESP---EEALHREVLEETGLTVE------IGRRLGSASRYFYSPDGDYDAH 79 (128)
T ss_pred CCEEEEEEccCCC-CCCeEECCCcccCCCCCH---HHHHHHHHHHHhCcEee------cceeeeEEEEEEECCCCCeecc
Confidence 5899999998766 899999999999999877 89999999999999875 34566666665532 23
Q ss_pred EEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHH
Q 011579 418 LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVM 468 (482)
Q Consensus 418 l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil 468 (482)
...++|.+.. .++... ......+..+++|++.+++..+.+.+..++.+
T Consensus 80 ~~~~~f~~~~--~~~~~~-~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~a~ 127 (128)
T cd04684 80 HLCVFYDARV--VGGALP-VQEPGEDSHGAAWLPLDEAIERLLSPLVLWAV 127 (128)
T ss_pred EEEEEEEEEE--ecCccc-cCCCCCCceeeEEECHHHhhccCCCHHHHHhh
Confidence 4456676643 332210 01223466789999999999999888887765
No 36
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.38 E-value=1.7e-12 Score=112.88 Aligned_cols=106 Identities=23% Similarity=0.232 Sum_probs=80.0
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcC------ceE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS------HIR 417 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~ft------h~~ 417 (482)
++++|+.||.. +.+.|.|+||||.++.+|+. ++|+.||+.||.|+++. ....++.+.+.++ +.+
T Consensus 10 ~~~vLl~~r~~-~~~~~~w~~PgG~ie~gE~~---~~aa~RE~~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04673 10 GGRVLLVRRAN-PPDAGLWSFPGGKVELGETL---EQAALRELLEETGLEAE------VGRLLTVVDVIERDAAGRVEFH 79 (122)
T ss_pred CCEEEEEEEcC-CCCCCeEECCCcccCCCCCH---HHHHHHHHHHhhCcEee------eceeEEEEEEeeccCCCccceE
Confidence 57999999975 45789999999999999877 89999999999999975 3456666666652 334
Q ss_pred EEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhH
Q 011579 418 LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVR 465 (482)
Q Consensus 418 l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~ 465 (482)
..+++|.+.. ..+ .. ....|+.+++|++++++.++++++.++
T Consensus 80 ~~~~~~~~~~-~~~-~~----~~~~E~~~~~w~~~~el~~~~~~~~~~ 121 (122)
T cd04673 80 YVLIDFLCRY-LGG-EP----VAGDDALDARWVPLDELAALSLTESTR 121 (122)
T ss_pred EEEEEEEEEe-CCC-cc----cCCcccceeEEECHHHHhhCcCCcccc
Confidence 5556666642 222 11 123577889999999999999998765
No 37
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.37 E-value=2.5e-12 Score=112.30 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=72.3
Q ss_pred CCeEEEEecCCCC-CCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEEE
Q 011579 344 DGVFILVKRRDEG-LLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHV 422 (482)
Q Consensus 344 ~gkvLl~KRp~~g-llaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~~ 422 (482)
++++|+.||...+ ...|.|+||||+++.||+. ++|+.||+.||.|+++. ....+..+.+... ....+++
T Consensus 10 ~~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~---~~aa~REl~EEtGl~~~------~~~~l~~~~~~~~-~~~~~~~ 79 (117)
T cd04691 10 DDKVLLERRSLTKNADPGKLNIPGGHIEAGESQ---EEALLREVQEELGVDPL------SYTYLCSLYHPTS-ELQLLHY 79 (117)
T ss_pred CCEEEEEEeCCCCCCCCCeEECcceeecCCCCH---HHHHHHHHHHHHCCCcc------cceEEEEEeccCC-CeEEEEE
Confidence 5899999998765 4899999999999999887 89999999999999864 2344555444443 3455677
Q ss_pred EEEEEEEeCCcccccccccCCCCeeeeeccCCcccC
Q 011579 423 ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (482)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (482)
|.+.. ..+. +...|..+..|++.+++...
T Consensus 80 ~~~~~-~~~~------~~~~E~~~~~W~~~~~l~~~ 108 (117)
T cd04691 80 YVVTF-WQGE------IPAQEAAEVHWMTANDIVLA 108 (117)
T ss_pred EEEEE-ecCC------CCcccccccEEcCHHHcchh
Confidence 77652 3332 12267788999999888643
No 38
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.36 E-value=2.7e-12 Score=112.49 Aligned_cols=105 Identities=17% Similarity=0.126 Sum_probs=74.1
Q ss_pred cCCCeEEEEecCCCCC-CCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccc-cccEEEEcCc-eEE
Q 011579 342 QPDGVFILVKRRDEGL-LAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILRED-VGEFVHIFSH-IRL 418 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gl-laGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~-l~~v~H~fth-~~l 418 (482)
+.+|++|+.||+..+. ++|+|+||||.++.+|++ .+|+.||+.||.|+++. .... ...+.|.++. ...
T Consensus 10 ~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~---~~aa~RE~~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~ 80 (129)
T cd04699 10 KDVGRILILKRSKDERTAPGKWELPGGKVEEGETF---EEALKREVYEETGLTVT------PFLRYPSTVTHEDSGVYNV 80 (129)
T ss_pred CCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCH---HHHHHHHHHHhhCcEEE------eeeeeeEEEEEcCCCEEEE
Confidence 4458999999998775 599999999999999877 79999999999999875 2222 2356676662 233
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCC
Q 011579 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLT 461 (482)
Q Consensus 419 ~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp 461 (482)
..++|.+. ..+.. .....+..+++|++.+++..+.+|
T Consensus 81 ~~~~~~~~--~~~~~----~~~~~e~~~~~w~~~~el~~~~~~ 117 (129)
T cd04699 81 IYLVFVCE--ALSGA----VKLSDEHEEYAWVTLEELAILKAD 117 (129)
T ss_pred EEEEEEee--ecCCc----ccCChhheEEEEecHHHhhhhhcc
Confidence 33444443 22211 112356778999999998776665
No 39
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.36 E-value=2.6e-12 Score=112.63 Aligned_cols=106 Identities=16% Similarity=0.026 Sum_probs=74.0
Q ss_pred CCCeEEEEecCCC--CCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEE
Q 011579 343 PDGVFILVKRRDE--GLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKV 420 (482)
Q Consensus 343 ~~gkvLl~KRp~~--gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L 420 (482)
.+|++|+.+|... ..+.|+|+||||+++.+|++ ++|+.||+.||+|+++. .........+.+......+
T Consensus 10 ~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~---~~aa~RE~~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~ 80 (122)
T cd04682 10 GDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETP---LECVLRELLEEIGLTLP------ESRIPWFRVYPSASPPGTE 80 (122)
T ss_pred cCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCH---HHHHHHHHHHHhCCccc------ccccceeEecccCCCCceE
Confidence 3589999999864 57899999999999999887 89999999999999875 1111122233333344566
Q ss_pred EEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCC
Q 011579 421 HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLT 461 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp 461 (482)
++|.+.. ..+ ... .....++.+++|++.+++.+...+
T Consensus 81 ~~f~~~~-~~~-~~~--~~~~~E~~~~~W~~~~el~~~~~~ 117 (122)
T cd04682 81 HVFVVPL-TAR-EDA--ILFGDEGQALRLMTVEEFLAHEDA 117 (122)
T ss_pred EEEEEEE-ecC-CCc--cccCchhheeecccHHHHhhcccc
Confidence 7777753 222 111 123467889999999998765543
No 40
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.35 E-value=7.3e-12 Score=113.62 Aligned_cols=103 Identities=21% Similarity=0.280 Sum_probs=75.5
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccc--cccccEEEEcCce---
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILR--EDVGEFVHIFSHI--- 416 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~--~~l~~v~H~fth~--- 416 (482)
+.+|++|+.||... ...|.|+||||+++.||+. ++|+.||+.||+|+++. .. ..++.+.|.|++.
T Consensus 21 ~~~g~vLl~~R~~~-p~~g~w~lPGG~ve~gEs~---~~aa~RE~~EE~Gl~v~------~~~~~~l~~~~~~~~~~~~~ 90 (144)
T cd03430 21 NEDGQYLLGKRTNR-PAQGYWFVPGGRIRKNETL---TEAFERIAKDELGLEFL------ISDAELLGVFEHFYDDNFFG 90 (144)
T ss_pred eCCCeEEEEEccCC-CCCCcEECCCceecCCCCH---HHHHHHHHHHHHCCCcc------cccceEEEEEEEEecccccc
Confidence 55789999999764 5799999999999999877 89999999999999875 33 4566666765421
Q ss_pred -----EEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCC
Q 011579 417 -----RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMG 459 (482)
Q Consensus 417 -----~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~ 459 (482)
+....+|.|.. .++.. ..++.++.+++|++.+++....
T Consensus 91 ~~~~~~~~~~~~~~~~--~~~~~---~~~~~e~~~~~W~~~~el~~~~ 133 (144)
T cd03430 91 DDFSTHYVVLGYVLKL--SSNEL---LLPDEQHSEYQWLTSDELLADD 133 (144)
T ss_pred CCCccEEEEEEEEEEE--cCCcc---cCCchhccEeEEecHHHHhcCC
Confidence 33445566642 22211 1234678899999999998753
No 41
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.35 E-value=4.3e-12 Score=112.83 Aligned_cols=114 Identities=12% Similarity=0.089 Sum_probs=82.9
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCce---EE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHI---RL 418 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~---~l 418 (482)
..++++|+.||+.+ +.|.|.||||++++||++ ++|+.||+.||+|+++.. ......+.|.|++. ..
T Consensus 11 ~~~~~vLl~~r~~~--~~g~w~~PgG~ve~gEs~---~~aa~RE~~EEtGl~~~~------~~~~~~~~~~~~~~~~~~~ 79 (131)
T cd04695 11 DKETKVLLLKRVKT--LGGFWCHVAGGVEAGETA---WQAALRELKEETGISLPE------LYNADYLEQFYEANDNRIL 79 (131)
T ss_pred CCCCEEEEEEecCC--CCCcEECCcccccCCCCH---HHHHHHHHHHHhCCCccc------cccccceeeEeecCCceEE
Confidence 45789999999876 789999999999999988 899999999999998752 12222344545432 22
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 419 ~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
.+.+|.+.+ ..+... ....++.+++|++.+++.++...+.++.+++.+
T Consensus 80 ~~~~f~~~~--~~~~~~---~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~ 127 (131)
T cd04695 80 MAPVFVGFV--PPHQEV---VLNHEHTEYRWCSFAEALELAPFPGQRALYDHV 127 (131)
T ss_pred EEEEEEEEe--cCCCcc---ccCchhcccEecCHHHHHHhcCChhHHHHHHHH
Confidence 344555532 221111 123578899999999999999999999988754
No 42
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.34 E-value=1.1e-11 Score=108.82 Aligned_cols=112 Identities=21% Similarity=0.174 Sum_probs=80.7
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcC--ceEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS--HIRLK 419 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~ft--h~~l~ 419 (482)
+.+|++|+.+|... ...|.|+||||+++.||+. ++|+.||+.||.|+++. ..+.++.+.|.++ ..+..
T Consensus 11 ~~~~~vLL~~r~~~-~~~~~w~lPgG~ve~gEt~---~eaa~RE~~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04679 11 RDDGKLLLVKRLRA-PEAGHWGIPGGKVDWMEAV---EDAVVREIEEETGLSIH------STRLLCVVDHIIEEPPQHWV 80 (125)
T ss_pred CCCCEEEEEEecCC-CCCCeEeCCeeeccCCCCH---HHHHHHHHHHHHCCCcc------cceEEEEEeecccCCCCeEE
Confidence 55689999999753 3579999999999999877 89999999999999986 3455666666654 33444
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHH
Q 011579 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVM 468 (482)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil 468 (482)
.++|.+.. .++... .....|+.+++|++.+++.+ .+..+++..+
T Consensus 81 ~~~f~~~~--~~~~~~--~~~~~E~~~~~W~~~~~l~~-~l~~~~~~~~ 124 (125)
T cd04679 81 APVYLAEN--FSGEPR--LMEPDKLLELGWFALDALPQ-PLTRATRDAV 124 (125)
T ss_pred EEEEEEee--cCCccc--cCCCccccEEEEeCHHHCCc-hhHHHHHHHh
Confidence 55666642 332221 11224678899999999987 6667766644
No 43
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.33 E-value=6.4e-12 Score=110.93 Aligned_cols=113 Identities=13% Similarity=0.147 Sum_probs=76.3
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcC--ceEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS--HIRLK 419 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~ft--h~~l~ 419 (482)
+.+|++|+.||...+ ..|.|+||||+++.+|+. .+|+.||+.||.|+++. ....++.+.+.|+ ....+
T Consensus 10 ~~~~~vLL~~r~~~~-~~~~w~~PgG~ve~gEs~---~~aa~RE~~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~ 79 (130)
T cd04681 10 NEDGELLVVRRAREP-GKGTLDLPGGFVDPGESA---EEALIREIREETGLKVT------ELSYLFSLPNTYPYGGMEYD 79 (130)
T ss_pred cCCCcEEEEEecCCC-CCCcEeCCceeecCCCCH---HHHHHHHHHHHhCCccc------ceeEEEeecceeeeCCceeE
Confidence 567899999997654 689999999999999877 89999999999999876 3345555544443 22222
Q ss_pred -E-EEEEEEEEEeCCcccccccccCCCCeeeeeccCCcc--cCCCChHhHHHHhc
Q 011579 420 -V-HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLA--SMGLTSGVRKVMMG 470 (482)
Q Consensus 420 -L-~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~--~~~fp~a~~kil~~ 470 (482)
+ .+|.+. +.+... .....++..++|+++++|. ++++| ..+..++.
T Consensus 80 ~~~~~~~~~--~~~~~~---~~~~~e~~~~~W~~~~el~~~~~~~~-~~~~~~~~ 128 (130)
T cd04681 80 TLDLFFVCQ--VDDKPI---VKAPDDVAELKWVVPQDIELENFAFP-SIRQAVER 128 (130)
T ss_pred EEEEEEEEE--eCCCCC---cCChHHhheeEEecHHHCCcccCCcH-HHHHHHHh
Confidence 1 234453 333211 1223567789999999984 56665 44444443
No 44
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.33 E-value=7e-12 Score=107.37 Aligned_cols=114 Identities=25% Similarity=0.234 Sum_probs=84.2
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
+.++++|+.||+.+ ++|+|+||+|.++.+|+. .+++.||+.||+|+.+... ....+....|.++|....++
T Consensus 9 ~~~~~ill~kr~~~--~~~~~~~p~G~~~~~e~~---~~~a~RE~~EE~Gl~~~~~----~~~~~~~~~~~~~~~~~~~~ 79 (123)
T cd02883 9 DEDGRVLLVRRADS--PGGLWELPGGGVEPGETL---EEAAIREVREETGLDVDVL----RLLGVYEVESPDEGEHAVVF 79 (123)
T ss_pred CCCCCEEEEEEcCC--CCCeEeCCcccccCCCCH---HHHHHHHHHHhhCccceee----eEEEEEEeeccCCCceEEEE
Confidence 44589999999877 999999999999999876 7899999999999987410 11223344455567888888
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHH
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVM 468 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil 468 (482)
+|.+.+ .+.... .....+...++|++++++.+++.+++.++++
T Consensus 80 ~~~~~~--~~~~~~--~~~~~e~~~~~w~~~~~l~~~~~~~~~~~~~ 122 (123)
T cd02883 80 VFLARL--VGGEPT--LLPPDEISEVRWVTLDELPALALSPALRPAL 122 (123)
T ss_pred EEEEEe--CCCCcC--CCCCCccceEEEEcHHHCccccccccccccc
Confidence 888753 322110 0122456678999999999999999888765
No 45
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.32 E-value=5e-12 Score=111.69 Aligned_cols=109 Identities=19% Similarity=0.172 Sum_probs=80.8
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccE----EEEcCc--eE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEF----VHIFSH--IR 417 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v----~H~fth--~~ 417 (482)
++++|+.||..+ .+|.|+||||.++.+|++ ++|+.||+.||+|+.+. ....+... .+.+++ .+
T Consensus 14 ~~~vLL~~r~~~--~~~~w~~PgG~ve~~Es~---~~aa~RE~~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~~~~ 82 (129)
T cd04664 14 EGRVLLLRRSDK--YAGFWQSVTGGIEDGESP---AEAARREVAEETGLDPE------RLTLLDRGASIAFVEFTDNGRV 82 (129)
T ss_pred CCEEEEEEeCCC--CCCcccccCcccCCCCCH---HHHHHHHHHHHHCCChh------heEEEeecccccccccCCCceE
Confidence 789999999876 899999999999999887 89999999999999874 12223222 122322 34
Q ss_pred EEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHH
Q 011579 418 LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVM 468 (482)
Q Consensus 418 l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil 468 (482)
..+++|.+.+ .+... ...+.|+.++.|++.+++.++...+.+++++
T Consensus 83 ~~~~~f~~~~--~~~~~---~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~ 128 (129)
T cd04664 83 WTEHPFAFHL--PSDAV---VTLDWEHDAFEWVPPEEAAALLLWESNRRAW 128 (129)
T ss_pred EEEeEEEEEc--CCCCc---ccCCccccccEecCHHHHHHHHcChhhhhhh
Confidence 5567777753 33221 1123577889999999999999999998876
No 46
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.32 E-value=8e-12 Score=109.84 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=83.7
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcC----ceEEE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS----HIRLK 419 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~ft----h~~l~ 419 (482)
+++||+.||..+ |.|+||||.++.+|+. ++|+.||+.||+|+++. ....++.+.+.++ .....
T Consensus 15 ~~~vLl~~~~~~----~~w~~PgG~v~~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T cd03673 15 GIEVLLIHRPRG----DDWSLPKGKLEPGETP---PEAAVREVEEETGIRAE------VGDPLGTIRYWFSSSGKRVHKT 81 (131)
T ss_pred CeEEEEEEcCCC----CcccCCCCccCCCCCH---HHHHHHHHhhhhCCceE------ecceEEEEEEeccCCCCCcceE
Confidence 489999999754 8999999999999877 89999999999999875 4456777777666 34455
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
+++|.+.. .+..... ....|..++.|++.+++..+-..+.++.+++..
T Consensus 82 ~~~~~~~~--~~~~~~~--~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~ 129 (131)
T cd03673 82 VHWWLMRA--LGGEFTP--QPDEEVDEVRWLPPDEARDRLSYPNDRELLRAA 129 (131)
T ss_pred EEEEEEEE--cCCCccc--CCCCcEEEEEEcCHHHHHHHcCCHhHHHHHHHh
Confidence 66676643 2221110 123567789999999999888888888888753
No 47
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.32 E-value=2.2e-11 Score=107.48 Aligned_cols=106 Identities=18% Similarity=0.181 Sum_probs=73.9
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEc--CceEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF--SHIRLK 419 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~f--th~~l~ 419 (482)
+.+|++|+.||.. +..+|.|.||||.++.||+. ++|+.||+.||+|+++. ....++.+.+.+ .+.+..
T Consensus 11 ~~~~~iLl~~r~~-~~~~~~w~~PGG~ve~gEt~---~~Aa~REl~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~~ 80 (129)
T cd04678 11 NPKGKVLLGKRKG-SHGAGTWALPGGHLEFGESF---EECAAREVLEETGLHIE------NVQFLTVTNDVFEEEGKHYV 80 (129)
T ss_pred CCCCeEEEEeccC-CCCCCeEECCcccccCCCCH---HHHHHHHHHHHhCCccc------ceEEEEEEeEEeCCCCcEEE
Confidence 5568999999986 46799999999999999877 89999999999999976 334555555543 233334
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCC
Q 011579 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMG 459 (482)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~ 459 (482)
..+|.+. ..++.......+..++.+++|++.+++.+++
T Consensus 81 ~~~~~~~--~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~ 118 (129)
T cd04678 81 TIFVKAE--VDDGEAEPNKMEPEKCEGWEWFDWEELPSVD 118 (129)
T ss_pred EEEEEEE--eCCCCcccCCCCCceeCceEEeCHHHCCCcc
Confidence 4455554 3332211100022456789999999999864
No 48
>PLN02325 nudix hydrolase
Probab=99.31 E-value=2.2e-11 Score=110.60 Aligned_cols=122 Identities=15% Similarity=0.119 Sum_probs=81.8
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCc----eEE
Q 011579 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH----IRL 418 (482)
Q Consensus 343 ~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth----~~l 418 (482)
.+|++||.||... ...|.|.+|||.++.||+. ++|+.||+.||.|+++. ....++.+.+.|.+ .+.
T Consensus 18 ~~~~vLL~rr~~~-~~~g~W~lPGG~ve~gEs~---~~aa~REv~EEtGl~v~------~~~~l~~~~~~~~~~~~~~~~ 87 (144)
T PLN02325 18 KGNSVLLGRRRSS-IGDSTFALPGGHLEFGESF---EECAAREVKEETGLEIE------KIELLTVTNNVFLEEPKPSHY 87 (144)
T ss_pred cCCEEEEEEecCC-CCCCeEECCceeCCCCCCH---HHHHHHHHHHHHCCCCc------ceEEEEEecceeecCCCCcEE
Confidence 3579999999754 4679999999999999877 89999999999999986 34455554444422 222
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccCCCCCC
Q 011579 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKSPPISH 477 (482)
Q Consensus 419 ~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~~~~ 477 (482)
...+|.+. ..+...........++.+++|++.++|.. .+..+.+.+++....|.-|
T Consensus 88 i~~~f~~~--~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~-~~~~p~~~~~~~~~~~~~~ 143 (144)
T PLN02325 88 VTVFMRAV--LADPSQVPQNLEPEKCYGWDWYEWDNLPE-PLFWPLEKLVGSGFNPFPH 143 (144)
T ss_pred EEEEEEEE--ECCCCCCCCcCCchhcCceEEEChHHCCh-hhhHHHHHHHHcCCCCCCC
Confidence 22334443 22221111011223457799999999997 4666777788877666543
No 49
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.30 E-value=1.7e-11 Score=106.79 Aligned_cols=105 Identities=12% Similarity=0.073 Sum_probs=71.5
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCc-eEEEEE
Q 011579 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH-IRLKVH 421 (482)
Q Consensus 343 ~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth-~~l~L~ 421 (482)
.+|+|||.||...+.++|+|+||||+++.||+. ++|+.||+.||+|+.+... ....++.+.+.+.. .+....
T Consensus 9 ~~~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~---~~aa~REl~EEtGl~v~~~----~~~~~~~~~~~~~~~~~~~~~ 81 (120)
T cd04683 9 RDDEVLLQRRANTGYMDGQWALPAGHLEKGEDA---VTAAVREAREEIGVTLDPE----DLRLAHTMHRRTEDIESRIGL 81 (120)
T ss_pred ECCEEEEEEccCCCCCCCeEeCCccccCCCCCH---HHHHHHHHHHHHCCccChh----heEEEEEEEecCCCCceEEEE
Confidence 468999999998888899999999999999877 8899999999999987410 11234444444432 222234
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccC
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (482)
+|.+.. ..+. .. ..+..++.+++|++.+++...
T Consensus 82 ~f~~~~-~~~~-~~--~~~~~e~~~~~W~~~~~l~~~ 114 (120)
T cd04683 82 FFTVRR-WSGE-PR--NCEPDKCAELRWFPLDALPDD 114 (120)
T ss_pred EEEEEe-ecCc-cc--cCCCCcEeeEEEEchHHCcch
Confidence 455542 2332 11 112245678999999998753
No 50
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.30 E-value=5.5e-12 Score=114.37 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=80.2
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCccccccc--------ccccEEEEc
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILRE--------DVGEFVHIF 413 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~--------~l~~v~H~f 413 (482)
+.+|++|+.||..+ .|.|+||||.+|.||++ ++|+.||+.||.|+++.... +.... ......|.|
T Consensus 16 ~~~~~vLl~~r~~~---~~~W~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 88 (148)
T PRK09438 16 TPDLGVLMLQRADD---PDFWQSVTGSLEEGETP---AQTAIREVKEETGIDVLAEQ-LTLIDCQRSIEYEIFPHWRHRY 88 (148)
T ss_pred eCCCeEEEEEecCC---CCcEeCCcccCCCCCCH---HHHHHHHHHHHhCcCccccc-eeecccccccccccchhhhhcc
Confidence 56789999998643 58999999999999887 89999999999999872100 00000 011112222
Q ss_pred C--ceEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 414 S--HIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 414 t--h~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
+ ..+...++|.+. ..++.. +...|+.+++|++++++.++.+.+.++.+++.+
T Consensus 89 ~~~~~~~~~~~f~~~--~~~~~~----~~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~ 142 (148)
T PRK09438 89 APGVTRNTEHWFCLA--LPHERP----VVLTEHLAYQWLDAREAAALTKSWSNAEAIEQL 142 (148)
T ss_pred ccccCCceeEEEEEe--cCCCCc----cccCcccceeeCCHHHHHHHhcChhHHHHHHHH
Confidence 2 123445677774 233211 122488999999999999999999999998865
No 51
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.30 E-value=1.3e-11 Score=108.65 Aligned_cols=112 Identities=16% Similarity=0.110 Sum_probs=75.1
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCccccccccccc-EEEEcCceEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGE-FVHIFSHIRLKV 420 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~-v~H~fth~~l~L 420 (482)
+.+++||+.||..+ +.|.|+||||+++.+|+. ++|+.||+.||.|+.+. ....++. ..|.++.....+
T Consensus 11 ~~~~~vLl~~r~~~--~~~~w~~PGG~ve~gEt~---~~aa~RE~~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~~ 79 (127)
T cd04670 11 NEKNEVLVVQERNK--TPNGWKLPGGLVDPGEDI---FDGAVREVLEETGIDTE------FVSVVGFRHAHPGAFGKSDL 79 (127)
T ss_pred cCCCeEEEEEccCC--CCCcEECCCccCCCCCCH---HHHHHHHHHHHHCCCcc------eeEEEEEEecCCCCcCceeE
Confidence 55789999998765 899999999999999877 89999999999999875 2222221 122232222222
Q ss_pred EEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHH
Q 011579 421 HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVM 468 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil 468 (482)
+ |.+.+...+... .....|...++|++.+++.+.+++..+..-+
T Consensus 80 ~-~~~~~~~~~~~~---~~~~~E~~~~~w~~~~el~~~~~~~~~~~~~ 123 (127)
T cd04670 80 Y-FICRLKPLSFDI---NFDTSEIAAAKWMPLEEYISQPITSEVNRLI 123 (127)
T ss_pred E-EEEEEccCcCcC---CCChhhhheeEEEcHHHHhcchhHHHHHHHH
Confidence 2 344321111111 1223466789999999999999998865544
No 52
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.29 E-value=6.2e-12 Score=115.68 Aligned_cols=105 Identities=15% Similarity=0.052 Sum_probs=75.1
Q ss_pred CCeEEEEecCCCC-CCCcccccCccccCCC-CChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 344 DGVFILVKRRDEG-LLAGLWEFPSIILDGE-TDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 344 ~gkvLl~KRp~~g-llaGLWEFPggkve~~-e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
+++||+.||.... .++|+|+||||+++.| |++ ++|+.||+.||+|+++. ....++.+.+.+++....++
T Consensus 15 ~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~---~eaa~REl~EEtGl~~~------~~~~l~~~~~~~~~~~~~v~ 85 (157)
T cd03426 15 ELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDP---VATALREAEEEIGLPPD------SVEVLGRLPPYYTRSGFVVT 85 (157)
T ss_pred ceEEEEEEcccccccCCCcEECCCCCcCCCcCCH---HHHHHHHHHHHhCCCcc------ceEEEEECCCccccCCCEEE
Confidence 4799999998765 5899999999999998 887 89999999999999875 33445444433333344456
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCC
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLT 461 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp 461 (482)
+|.+.+ .+... ..+++.|+.+++|++.+++.++.++
T Consensus 86 ~~~~~~--~~~~~--~~~~~~E~~~~~W~~~~el~~~~~~ 121 (157)
T cd03426 86 PVVGLV--PPPLP--LVLNPDEVAEVFEVPLSFLLDPANP 121 (157)
T ss_pred EEEEEE--CCCCC--CCCCHHHhheeEEEcHHHHhCcCCc
Confidence 566542 22111 1233357888999999999887644
No 53
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.28 E-value=1.7e-11 Score=105.86 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=75.1
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
..++++|+.||.. |.|+||||.++++|++ ++|+.||+.||.|+.+. ....+. .|.+.....+
T Consensus 8 ~~~~~vLlv~r~~-----~~w~~PgG~ve~gE~~---~~aa~REl~EEtGl~~~------~~~~~~----~~~~~~~~~~ 69 (112)
T cd04667 8 RRGGRVLLVRKSG-----SRWALPGGKIEPGETP---LQAARRELQEETGLQGL------DLLYLF----HVDGGSTRHH 69 (112)
T ss_pred ecCCEEEEEEcCC-----CcEeCCCCcCCCCCCH---HHHHHHHHHHHhCCccc------ceEEEE----EEeCCCEEEE
Confidence 3468999999963 8999999999999887 89999999999999864 122222 2223233345
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHH
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVM 468 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil 468 (482)
+|.+.+ .++.. ..+..++.+++|++.+++.++.+++++++|.
T Consensus 70 ~f~~~~--~~~~~---~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~ 111 (112)
T cd04667 70 VFVASV--PPSAQ---PKPSNEIADCRWLSLDALGDLNASAATRLIV 111 (112)
T ss_pred EEEEEc--CCcCC---CCCchheeEEEEecHHHhhhcccchhhhhhc
Confidence 666642 22211 1123567789999999999999999998874
No 54
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.28 E-value=2e-11 Score=107.83 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=71.9
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEE--------cC
Q 011579 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHI--------FS 414 (482)
Q Consensus 343 ~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~--------ft 414 (482)
.+|++|+.||...+ ++.|+||||.++.||+. ++|+.||+.||+|+++.. .+.+....+. ..
T Consensus 10 ~~~~vLl~~r~~~~--~~~~~lPGG~ve~gEt~---~~aa~RE~~EEtGl~v~~------~~~~~~~~~~~~~~~~~~~~ 78 (128)
T cd04687 10 KNDKILLIKHHDDG--GVWYILPGGGQEPGETL---EDAAHRECKEEIGIDVEI------GPLLFVREYIGHNPTSELPG 78 (128)
T ss_pred ECCEEEEEEEEcCC--CCeEECCCcccCCCCCH---HHHHHHHHHHHHCCcccc------CcEEEEEEEeccCccccCCC
Confidence 36899999997554 58999999999999877 899999999999999862 2222222222 12
Q ss_pred ceEEEEEEEEEEEEEeCCcc-cccccccCCCCeeeeeccCCcccCCCChH
Q 011579 415 HIRLKVHVELLVLCIKGGID-KWVEKQDKGTLSWKCVDGGTLASMGLTSG 463 (482)
Q Consensus 415 h~~l~L~~~~~~~~~~~~~~-~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a 463 (482)
..+...++|.|.+ .++.. ......+.+..+++|++.+++.++++.++
T Consensus 79 ~~~~i~~~f~~~~--~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~p~ 126 (128)
T cd04687 79 HFHQVELMFECKI--KSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYPS 126 (128)
T ss_pred ceeEEEEEEEEEE--CCCCcccccCCCCCCEEeeEEEcHHHhCcccccCC
Confidence 2344455666653 33221 11001123345799999999999998764
No 55
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.27 E-value=3.4e-11 Score=106.38 Aligned_cols=108 Identities=19% Similarity=0.141 Sum_probs=72.2
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
+.+|++|+.||..+ .+.|.|+||||+++.+|++ ++|+.||+.||.|+++. ....++ +.+...| ...+
T Consensus 9 ~~~~~vLl~~r~~~-~~~~~w~lPgG~ve~gEt~---~~aa~REl~EEtG~~~~------~~~~~~-~~~~~~~--~~~~ 75 (123)
T cd04671 9 NNQGEVLLIQEAKR-SCRGKWYLPAGRMEPGETI---EEAVKREVKEETGLDCE------PTTLLS-VEEQGGS--WFRF 75 (123)
T ss_pred cCCCEEEEEEecCC-CCCCeEECceeecCCCCCH---HHHHHHHHHHHHCCeee------cceEEE-EEccCCe--EEEE
Confidence 56789999999755 4699999999999999887 89999999999999885 223332 2222223 2345
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhH
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVR 465 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~ 465 (482)
+|.+. ..++..........+..+++|++.+++ .++|.+++.
T Consensus 76 ~f~a~--~~~g~~~~~~~~~~e~~~~~W~~~~el-~~~~~~~~~ 116 (123)
T cd04671 76 VFTGN--ITGGDLKTEKEADSESLQARWYSNKDL-PLPLRAHDI 116 (123)
T ss_pred EEEEE--EeCCeEccCCCCCcceEEEEEECHHHC-CCccchhee
Confidence 56664 333221110011234457999999999 567766653
No 56
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.26 E-value=2.7e-11 Score=106.56 Aligned_cols=106 Identities=13% Similarity=0.117 Sum_probs=76.2
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcC--ce--EEE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS--HI--RLK 419 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~ft--h~--~l~ 419 (482)
++++|+.||.. .|.|+||||.++.||+. .+|+.||+.||.|+.+. ....++...|.|+ .. +..
T Consensus 11 ~~~vLl~~~~~----~~~w~lPgG~ve~gEs~---~~aa~RE~~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
T cd04688 11 NGKLLVQKNPD----ETFYRPPGGGIEFGESS---EEALIREFKEELGLKIE------ITRLLGVVENIFTYNGKPGHEI 77 (126)
T ss_pred CCEEEEEEeCC----CCeEECCCccccCCCCH---HHHHHHHHHHHhCCcee------cceeeEEEEEeeccCCcccEEE
Confidence 56999999875 68999999999999887 89999999999999876 4456666655443 22 334
Q ss_pred EEEEEEEEEEeCCccccc----ccccCCCCeeeeeccCCcccCCCChHh
Q 011579 420 VHVELLVLCIKGGIDKWV----EKQDKGTLSWKCVDGGTLASMGLTSGV 464 (482)
Q Consensus 420 L~~~~~~~~~~~~~~~~~----~~~~~e~~~~~Wv~~~eL~~~~fp~a~ 464 (482)
.++|.+. ..++..... .....++.+++|++++++..+++.+..
T Consensus 78 ~~~f~~~--~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p~~ 124 (126)
T cd04688 78 EFYYLVT--LLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYPEF 124 (126)
T ss_pred EEEEEEE--eCCCcccccccceeccCCCEEEEEEeeHHHcccCccCCcc
Confidence 5677765 333322100 012356788999999999999887653
No 57
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.25 E-value=3.9e-11 Score=106.60 Aligned_cols=117 Identities=12% Similarity=0.070 Sum_probs=81.0
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcC--ceEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS--HIRLK 419 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~ft--h~~l~ 419 (482)
..++++|+.||... -+|.|+||||.++.||++ .+|+.||+.||.|+++. ....++...+.++ ...+.
T Consensus 8 ~~~~~vLlv~r~~~--~~~~w~~PgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~ 76 (134)
T cd03675 8 ERDGRFLLVEEETD--GGLVFNQPAGHLEPGESL---IEAAVRETLEETGWHVE------PTALLGIYQWTAPDSDTTYL 76 (134)
T ss_pred EECCEEEEEEEccC--CCceEECCCccCCCCCCH---HHHHHHHHHHHHCcccc------cceEEEEEEeecCCCCeeEE
Confidence 35789999999765 478999999999999887 89999999999999875 2233443333333 23344
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCC---CChHhHHHHhccCC
Q 011579 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMG---LTSGVRKVMMGKSP 473 (482)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~---fp~a~~kil~~L~~ 473 (482)
.++|.+. ..++... .....+..+..|++.+++..+. .++..+++++.+..
T Consensus 77 ~~~f~~~--~~~~~~~--~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l~ 129 (134)
T cd03675 77 RFAFAAE--LLEHLPD--QPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYLA 129 (134)
T ss_pred EEEEEEE--ECCCCCC--CCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHHh
Confidence 4556654 3332211 1123467789999999999887 36777777776543
No 58
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.25 E-value=1.6e-11 Score=109.57 Aligned_cols=104 Identities=16% Similarity=0.212 Sum_probs=72.2
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCc------
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH------ 415 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth------ 415 (482)
-++++||+.||..++ +|.|+||||+++.||+. ++|+.||+.||+|+.+.- .+....+++.+.+.|+.
T Consensus 10 ~~~~~~Llvk~~~~~--~g~W~fPgG~ve~gEt~---~eaa~REl~EEtGl~v~~--~~i~~~~~~~~~~~~~~~~~~~~ 82 (132)
T cd04661 10 LDDTLVLLVQQKVGS--QNHWILPQGKREEGETL---RQTAERTLKELCGNNLKA--KFYGNAPVGFYKYKYPKAVRNEG 82 (132)
T ss_pred ccCcEEEEEEeecCC--CCeeECCcccccCCCCH---HHHHHHHHHHhhCCCceE--EEEEecCcEEEEEecCccccccc
Confidence 457899999997653 89999999999999887 899999999999998651 11111234444444432
Q ss_pred -eEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccC
Q 011579 416 -IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (482)
Q Consensus 416 -~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (482)
....+++|.+.+ ..| ... ...++.+++|++.+++..+
T Consensus 83 ~~~~~~~~f~~~~-~~g-~~~----~~~e~~~~~W~~~~el~~~ 120 (132)
T cd04661 83 IVGAKVFFFKARY-MSG-QFE----LSQNQVDFKWLAKEELQKY 120 (132)
T ss_pred CcccEEEEEEEEE-ecC-ccc----cCCCcceeEecCHHHHHhh
Confidence 123566777753 333 221 1267889999999999875
No 59
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.25 E-value=2.7e-11 Score=104.98 Aligned_cols=106 Identities=20% Similarity=0.192 Sum_probs=75.7
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEE---cCceEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHI---FSHIRL 418 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~---fth~~l 418 (482)
..+|++|+.||.. .|.|+||||.++++|+. ++|+.||+.||.|+++... ....++.+.+. +++..+
T Consensus 9 ~~~~~vLl~~r~~----~~~w~~PgG~ve~~Es~---~~aa~REl~EEtGl~~~~~----~~~~~~~~~~~~~~~~~~~~ 77 (118)
T cd04690 9 VRDGRVLLVRKRG----TDVFYLPGGKIEAGETP---LQALIRELSEELGLDLDPD----SLEYLGTFRAPAANEPGVDV 77 (118)
T ss_pred ecCCeEEEEEECC----CCcEECCCCccCCCCCH---HHHHHHHHHHHHCCccChh----heEEEEEEecccccCCCcEE
Confidence 4578999998864 36899999999999877 8999999999999987510 03445544442 233456
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhH
Q 011579 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVR 465 (482)
Q Consensus 419 ~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~ 465 (482)
.+++|.+.+ .+.. ....+..++.|++++++...++++.++
T Consensus 78 ~~~~f~~~~--~~~~-----~~~~e~~~~~W~~~~e~~~~~~~~~~~ 117 (118)
T cd04690 78 RATVYVAEL--TGEP-----VPAAEIEEIRWVDYDDPADDRLAPLLR 117 (118)
T ss_pred EEEEEEEcc--cCCc-----CCCchhhccEEecHHHccccccCcccc
Confidence 667777643 3211 123577889999999999988887653
No 60
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.24 E-value=4.7e-11 Score=103.60 Aligned_cols=110 Identities=18% Similarity=0.119 Sum_probs=77.7
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
+.+|++|+.||...+ .|+||||.++.||++ ++|+.||+.||.|+.+.. ....++.+.+.++...-.++
T Consensus 9 ~~~~~vLL~~r~~~~----~w~~PgG~ve~gEt~---~~aa~REl~EEtG~~~~~-----~~~~~~~~~~~~~~~~~~~~ 76 (120)
T cd04680 9 DADGRVLLVRHTYGP----GWYLPGGGLERGETF---AEAARRELLEELGIRLAV-----VAELLGVYYHSASGSWDHVI 76 (120)
T ss_pred CCCCeEEEEEECCCC----cEeCCCCcCCCCCCH---HHHHHHHHHHHHCCcccc-----ccceEEEEecCCCCCceEEE
Confidence 567899999997654 899999999999887 899999999999998751 12345555555544444566
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHh
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMM 469 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~ 469 (482)
+|.+.. .+... .....|..+++|++.+++.+ .+.++.+..++
T Consensus 77 ~f~~~~--~~~~~---~~~~~E~~~~~w~~~~~l~~-~~~~~~~~~~~ 118 (120)
T cd04680 77 VFRARA--DTQPV---IRPSHEISEARFFPPDALPE-PTTPATRRRIA 118 (120)
T ss_pred EEEecc--cCCCc---cCCcccEEEEEEECHHHCcc-cCChHHHHHhh
Confidence 777743 22211 12335677899999999998 45555655554
No 61
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.23 E-value=5.5e-11 Score=105.54 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=72.9
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEEE
Q 011579 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHV 422 (482)
Q Consensus 343 ~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~~ 422 (482)
.++++|+.||..+. ..|.|+||||+++.+|+. ++++.||+.||+|+++. ....++ .+.+++....+++
T Consensus 22 ~~~~vLL~kr~~~~-~~g~w~lPgG~ve~gE~~---~~a~~REl~EEtGl~~~------~~~~~~--~~~~~~~~~~~~~ 89 (130)
T cd04511 22 WEGKVLLCRRAIEP-RHGFWTLPAGFMENGETT---EQGALRETWEEAGARVE------IDGLYA--VYSVPHISQVYMF 89 (130)
T ss_pred cCCEEEEEEecCCC-CCCeEECCcccccCCCCH---HHHHHHHHHHHhCCEEE------eeeEEE--EEecCCceEEEEE
Confidence 35899999997654 789999999999999887 89999999999999875 222333 2334455545667
Q ss_pred EEEEEEEeCCcccccccccCCCCeeeeeccCCcc--cCCCCh
Q 011579 423 ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLA--SMGLTS 462 (482)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~--~~~fp~ 462 (482)
|.+.+ .++.. ..+.++.+.+|++.++|. ++.|++
T Consensus 90 f~~~~--~~~~~----~~~~e~~~~~~~~~~~l~~~~l~~~~ 125 (130)
T cd04511 90 YRARL--LDLDF----APGPESLEVRLFTEEEIPWDELAFPT 125 (130)
T ss_pred EEEEE--cCCcc----cCCcchhceEEECHHHCCchhccccc
Confidence 77753 33221 122567788999999996 566654
No 62
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.22 E-value=5.2e-11 Score=108.07 Aligned_cols=116 Identities=21% Similarity=0.186 Sum_probs=76.2
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCccccccccccc----EEEEcCc--
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGE----FVHIFSH-- 415 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~----v~H~fth-- 415 (482)
+.+|++||.||...+ |.|+||||.+++||+. .+|+.||+.||.|+++. ....++. +.+.++.
T Consensus 12 ~~~~~vLL~~r~~~~---~~W~~PgG~~e~gE~~---~~aA~REv~EEtGl~~~------~~~~l~~~~~~~~y~~~~~~ 79 (147)
T cd03671 12 NEDGKVFVGRRIDTP---GAWQFPQGGIDEGEDP---EQAALRELEEETGLDPD------SVEIIAEIPDWLRYDLPPEL 79 (147)
T ss_pred eCCCEEEEEEEcCCC---CCEECCcCCCCCCcCH---HHHHHHHHHHHHCCCcC------ceEEEEEcCCeeEeeChhhh
Confidence 557899999998776 9999999999999877 89999999999999875 2222322 2232220
Q ss_pred ---------eEEEEEEEEEEEEEeCCccccccc-ccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 416 ---------IRLKVHVELLVLCIKGGIDKWVEK-QDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 416 ---------~~l~L~~~~~~~~~~~~~~~~~~~-~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
..-..++|.+.+........+ .. ...|+.+++|++++++.++..| -.+.|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~E~~~~~W~~~~el~~~~~~-~~~~~~~~~ 143 (147)
T cd03671 80 KLKIWGGRYRGQEQKWFLFRFTGDDSEIDL-NAPEHPEFDEWRWVPLEELPDLIVP-FKRPVYEAV 143 (147)
T ss_pred hccccCCcCCCEEEEEEEEEecCCCccccC-CCCCCCCEeeEEeCCHHHHHHhchh-hhHHHHHHH
Confidence 012335555543211111111 11 1357889999999999998765 555566543
No 63
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.22 E-value=6.3e-11 Score=111.61 Aligned_cols=114 Identities=12% Similarity=0.119 Sum_probs=80.7
Q ss_pred cCCCeEEEEecCCCC-CCCcccc-cCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEE
Q 011579 342 QPDGVFILVKRRDEG-LLAGLWE-FPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLK 419 (482)
Q Consensus 342 ~~~gkvLl~KRp~~g-llaGLWE-FPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~ 419 (482)
+.+|++|+.+|...+ .++|.|+ ||||.+++||++ .+|+.||+.||.|+.+. ....++.+.+......+.
T Consensus 46 ~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~---~eAA~REL~EEtGl~~~------~~~~~~~~~~~~~~~~~~ 116 (180)
T PRK15393 46 DGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQL---LESARREAEEELGIAGV------PFAEHGQFYFEDENCRVW 116 (180)
T ss_pred CCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCH---HHHHHHHHHHHHCCCCc------cceeceeEEecCCCceEE
Confidence 567999999997654 5688885 899999999887 89999999999999864 223455554444444544
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccC--CCChHhHHHHhc
Q 011579 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM--GLTSGVRKVMMG 470 (482)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~--~fp~a~~kil~~ 470 (482)
.++|.+. ..+.. .....|+..++|++++++.++ .|++.....+..
T Consensus 117 ~~~f~~~--~~~~~----~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~ 163 (180)
T PRK15393 117 GALFSCV--SHGPF----ALQEEEVSEVCWMTPEEITARCDEFTPDSLKALAL 163 (180)
T ss_pred EEEEEEE--eCCCC----CCChHHeeEEEECCHHHHhhhhhhcCccHHHHHHH
Confidence 5556553 23321 123467889999999999987 686666555533
No 64
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.20 E-value=5.9e-11 Score=104.84 Aligned_cols=102 Identities=15% Similarity=0.150 Sum_probs=73.9
Q ss_pred cCCCeEEEEecCCCC-CCCccccc-CccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEE
Q 011579 342 QPDGVFILVKRRDEG-LLAGLWEF-PSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLK 419 (482)
Q Consensus 342 ~~~gkvLl~KRp~~g-llaGLWEF-Pggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~ 419 (482)
+.+|+||+.||...+ .+.|+|+| |||+++.||+. ++|+.||+.||+|+++. ....++.+.+......+.
T Consensus 9 ~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~---~~aa~REl~EEtGl~~~------~l~~~~~~~~~~~~~~~~ 79 (126)
T cd04697 9 NSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESY---LQNAQRELEEELGIDGV------QLTPLGLFYYDTDGNRVW 79 (126)
T ss_pred cCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCH---HHHHHHHHHHHHCCCcc------ccEEeeEEEecCCCceEE
Confidence 668999999998765 57999999 69999999887 89999999999999875 234455554443333455
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccC
Q 011579 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (482)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (482)
.++|.+. ..+.. ..+..|+.+++|++.+++.++
T Consensus 80 ~~~f~~~--~~~~~----~~~~~E~~~~~w~~~~el~~~ 112 (126)
T cd04697 80 GKVFSCV--YDGPL----KLQEEEVEEITWLSINEILQF 112 (126)
T ss_pred EEEEEEE--ECCCC----CCCHhHhhheEEcCHHHHHHH
Confidence 5666653 33321 123357788999999888764
No 65
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.20 E-value=9.2e-11 Score=106.06 Aligned_cols=104 Identities=20% Similarity=0.166 Sum_probs=72.6
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEE-EE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRL-KV 420 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l-~L 420 (482)
+.++++|+.||.. +...|+|+||||.+++||++ ++|+.||+.||.|+++. ....++.+.+.|++... ..
T Consensus 22 ~~~~~vLL~~r~~-~~~~~~w~lPgG~ve~gEt~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~ 91 (142)
T cd04700 22 NERNDVLLVQEKG-GPKKGLWHIPSGAVEDGEFP---QDAAVREACEETGLRVR------PVKFLGTYLGRFDDGVLVLR 91 (142)
T ss_pred eCCCcEEEEEEcC-CCCCCeEECCceecCCCCCH---HHHHHHHHHHhhCceee------ccEEEEEEEEEcCCCcEEEE
Confidence 4567899988754 34689999999999999988 89999999999999986 34556655555654332 23
Q ss_pred EEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCC
Q 011579 421 HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMG 459 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~ 459 (482)
++|.+.. .+.... .....|..+++|++++++.++-
T Consensus 92 ~~f~~~~--~~~~~~--~~~~~E~~~~~w~~~~el~~~~ 126 (142)
T cd04700 92 HVWLAEP--EGQTLA--PKFTDEIAEASFFSREDVAQLY 126 (142)
T ss_pred EEEEEEe--cCCccc--cCCCCCEEEEEEECHHHhhhcc
Confidence 5666643 222111 0112467789999998887654
No 66
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.19 E-value=1.9e-10 Score=103.23 Aligned_cols=112 Identities=22% Similarity=0.225 Sum_probs=77.3
Q ss_pred cCC-CeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccc----cEEEE-c--
Q 011579 342 QPD-GVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVG----EFVHI-F-- 413 (482)
Q Consensus 342 ~~~-gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~----~v~H~-f-- 413 (482)
+.+ +++|+.||.. .|.|.+|||+++.||++ ++|+.||+.||.|+++.. ...++ ...|. |
T Consensus 11 ~~~~~~vLLv~r~~----~~~w~lPgG~ve~gE~~---~~aa~REl~EEtGl~~~~------~~~~~~~~~~~~~~~~~~ 77 (138)
T cd03674 11 NPDRGKVLLTHHRK----LGSWLQPGGHIDPDESL---LEAALRELREETGIELLG------LRPLSVLVDLDVHPIDGH 77 (138)
T ss_pred eCCCCeEEEEEEcC----CCcEECCceecCCCCCH---HHHHHHHHHHHHCCCccc------ceeccccccceeEeecCC
Confidence 344 8999999865 47899999999999888 899999999999998641 11211 11222 1
Q ss_pred ------CceEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 414 ------SHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 414 ------th~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
.+.++. .+|.+.+ .++.... ....|..+++|++.+++..+++++.++.+++.+
T Consensus 78 ~~~~~~~~~~~~-~~y~~~~--~~~~~~~--~~~~E~~~~~W~~~~el~~~~~~~~~~~~i~~~ 136 (138)
T cd03674 78 PKRGVPGHLHLD-LRFLAVA--PADDVAP--PKSDESDAVRWFPLDELASLELPEDVRRLVEKA 136 (138)
T ss_pred CCCCCCCcEEEE-EEEEEEc--cCccccC--CCCCcccccEEEcHHHhhhccCCHHHHHHHHHH
Confidence 233332 3466642 2222111 134577889999999999999999999998753
No 67
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.19 E-value=1.6e-10 Score=101.55 Aligned_cols=111 Identities=12% Similarity=0.074 Sum_probs=74.4
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCc----eEE
Q 011579 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH----IRL 418 (482)
Q Consensus 343 ~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth----~~l 418 (482)
.+|++|+.||.. .|.|+||||.++.+|+. .+|+.||+.||.|+++. ....++.+.|.|.. .+.
T Consensus 10 ~~~~vLlv~~~~----~~~~~lPGG~ve~gEt~---~~aa~REl~EEtGl~~~------~~~~l~~~~~~~~~~~~~~~~ 76 (125)
T cd04689 10 AGNKVLLARVIG----QPHYFLPGGHVEPGETA---ENALRRELQEELGVAVS------DGRFLGAIENQWHEKGVRTHE 76 (125)
T ss_pred eCCEEEEEEecC----CCCEECCCCcCCCCCCH---HHHHHHHHHHHhCceee------ccEEEEEEeeeeccCCceEEE
Confidence 478999999864 36899999999999877 89999999999999875 34566666554421 122
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhc
Q 011579 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMG 470 (482)
Q Consensus 419 ~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~ 470 (482)
..++|.+.. ..+........+.++.+++|++.+++..+ |....+++..
T Consensus 77 ~~~~f~~~~--~~~~~~~~~~~~~e~~~~~W~~~~el~~~--p~~l~~~~~~ 124 (125)
T cd04689 77 INHIFAVES--SWLASDGPPQADEDHLSFSWVPVSDLSLY--PALLRDLVKG 124 (125)
T ss_pred EEEEEEEEc--ccccccCCccCccceEEEEEccHHHcccC--cHHHHHHhhc
Confidence 335566542 21110000112245678999999998865 4666666554
No 68
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.16 E-value=9.4e-11 Score=106.45 Aligned_cols=109 Identities=11% Similarity=0.096 Sum_probs=70.6
Q ss_pred cCCCeEEEEecCCCC-CCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCc-----
Q 011579 342 QPDGVFILVKRRDEG-LLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH----- 415 (482)
Q Consensus 342 ~~~gkvLl~KRp~~g-llaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth----- 415 (482)
+.++++|+.||..++ .++|+|+||||.++.+|+. .+|+.||+.||+|+.+.... ...+.++...|.|++
T Consensus 10 ~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~---~~aa~RE~~EE~gi~~~~~~--~~~~~l~~~~~~~~~~~~~~ 84 (143)
T cd04694 10 SSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENL---LEAGLRELNEETGLTLDPID--KSWQVLGLWESVYPPLLSRG 84 (143)
T ss_pred cCCCEEEEEEECCCCCCCCCeEECcccccCCCCCH---HHHHHHHHHHHHCCCccccc--cceeEEeeeccccccccCCC
Confidence 567899999998764 7999999999999998876 89999999999999875100 001345555565552
Q ss_pred ----eEEEEEEEEEEEEEeCCccc--ccccccCCCCeeeeeccCCccc
Q 011579 416 ----IRLKVHVELLVLCIKGGIDK--WVEKQDKGTLSWKCVDGGTLAS 457 (482)
Q Consensus 416 ----~~l~L~~~~~~~~~~~~~~~--~~~~~~~e~~~~~Wv~~~eL~~ 457 (482)
.++.++++.+. ..+.... ...+.+.|+.+.+|++.+++..
T Consensus 85 ~~~~~~~~~y~~~~~--~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~ 130 (143)
T cd04694 85 LPKRHHIVVYILVKS--SETHQQLQARLQPDPNEVSAAAWLDKSLAKA 130 (143)
T ss_pred cccceeEEEEEEEEe--ccccccccccccCChhhccceEeeCHHHHHH
Confidence 22333333221 1111000 0123346888999999877643
No 69
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.14 E-value=7.9e-11 Score=103.31 Aligned_cols=118 Identities=25% Similarity=0.200 Sum_probs=85.2
Q ss_pred cCCCeEEEEecCCCC-CCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceE---
Q 011579 342 QPDGVFILVKRRDEG-LLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIR--- 417 (482)
Q Consensus 342 ~~~gkvLl~KRp~~g-llaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~--- 417 (482)
+.+|+||+.||...+ ..+|.|+||||.++++|+. .+|+.||+.||.|+++. ....++...+......
T Consensus 11 ~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~---~~aa~REl~EE~g~~~~------~~~~~~~~~~~~~~~~~~~ 81 (134)
T PF00293_consen 11 NEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESP---EEAARRELKEETGLDVS------PLELLGLFSYPSPSGDPEG 81 (134)
T ss_dssp ETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHH---HHHHHHHHHHHHSEEEE------EEEEEEEEEEEETTTESSE
T ss_pred eCCcEEEEEEecCCCCCCCCeEecceeeEEcCCch---hhhHHhhhhhcccceec------ccccceeeeecccCCCccc
Confidence 556799999998775 4899999999999999877 89999999999999874 2334444555544332
Q ss_pred EEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 418 LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 418 l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
...++|.+.+....... ..+..+...+.|++++++.++.....+..++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~---~~~~~e~~~~~W~~~~el~~~~~~~~~~~~i~~~ 132 (134)
T PF00293_consen 82 EIVIFFIAELPSEQSEI---QPQDEEISEVKWVPPDELLELLLNGRIRKIIPWL 132 (134)
T ss_dssp EEEEEEEEEEEEEESEC---HTTTTTEEEEEEEEHHHHHHHHHTTHHHHHHHHH
T ss_pred EEEEEEEEEEeCCcccc---CCCCccEEEEEEEEHHHhhhchhCcchhhhhccc
Confidence 45566666433222111 1222377889999999999999888888777654
No 70
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.14 E-value=1.6e-10 Score=103.11 Aligned_cols=105 Identities=18% Similarity=0.132 Sum_probs=71.9
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
+.++++|+.+|...+..+++|+||||.++.+|++ ++|+.||+.||.|+++. ....++.+.+........++
T Consensus 11 ~~~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~---~~aa~RE~~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~~ 81 (137)
T cd03424 11 DDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDP---EEAARRELEEETGYEAG------DLEKLGSFYPSPGFSDERIH 81 (137)
T ss_pred cCCCeEEEEEeeecCCCCEEEEeCCccCCCCCCH---HHHHHHHHHHHHCCCcc------ceEEEeeEecCCcccCccEE
Confidence 5668999988776677789999999999999887 89999999999999985 23444444322111122456
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccC
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (482)
+|.+. ..+.... ....+.|..+++|++.+++..+
T Consensus 82 ~~~~~--~~~~~~~-~~~~~~E~~~~~w~~~~el~~~ 115 (137)
T cd03424 82 LFLAE--DLSPGEE-GLLDEGEDIEVVLVPLDEALEL 115 (137)
T ss_pred EEEEE--ccccccc-CCCCCCCeeEEEEecHHHHHHH
Confidence 66664 2332110 1123467788999999887653
No 71
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.12 E-value=3.4e-10 Score=99.34 Aligned_cols=103 Identities=18% Similarity=0.152 Sum_probs=71.0
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEE---Ec--CceEE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVH---IF--SHIRL 418 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H---~f--th~~l 418 (482)
+|++|+.||.. .|.|+||||+++.+|++ .+|+.||+.||.|+.+. ....++...+ .+ .+.++
T Consensus 12 ~~~vLL~~~~~----~~~w~~PGG~ve~gEs~---~~aa~REl~EEtG~~~~------~~~~~~~~~~~~~~~~~~~~~~ 78 (123)
T cd04672 12 DGKILLVREKS----DGLWSLPGGWADVGLSP---AENVVKEVKEETGLDVK------VRKLAAVDDRNKHHPPPQPYQV 78 (123)
T ss_pred CCEEEEEEEcC----CCcEeCCccccCCCCCH---HHHHHHHHHHHhCCeee------EeEEEEEeccccccCCCCceEE
Confidence 48999999865 68999999999999887 89999999999999874 2233332222 22 22334
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhH
Q 011579 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVR 465 (482)
Q Consensus 419 ~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~ 465 (482)
...+|.|.+ ..+.. .. ..+..+++|++++++.++.+|.-.+
T Consensus 79 ~~~~f~~~~--~~~~~---~~-~~E~~~~~W~~~~el~~l~~~~~~~ 119 (123)
T cd04672 79 YKLFFLCEI--LGGEF---KP-NIETSEVGFFALDDLPPLSEKRNTE 119 (123)
T ss_pred EEEEEEEEe--cCCcc---cC-CCceeeeEEECHHHCcccccCCcch
Confidence 334566643 22211 11 2567789999999999999887654
No 72
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.12 E-value=2e-10 Score=105.92 Aligned_cols=102 Identities=13% Similarity=0.070 Sum_probs=70.4
Q ss_pred cCCCeEEEEecCCCC-CCCcccccC-ccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcC---ce
Q 011579 342 QPDGVFILVKRRDEG-LLAGLWEFP-SIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS---HI 416 (482)
Q Consensus 342 ~~~gkvLl~KRp~~g-llaGLWEFP-ggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~ft---h~ 416 (482)
+.+|++|+.||+.+. .+.|+|++| ||.++.|| .+|+.||+.||+|+++... ....++.+.|.++ ..
T Consensus 36 ~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE-----~eaa~REl~EE~Gl~~~~~----~l~~~~~~~~~~~~~~g~ 106 (158)
T TIGR02150 36 NEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE-----LEAAIRRLREELGIPADDV----PLTVLPRFSYRARDAWGE 106 (158)
T ss_pred cCCCeEEEEeccCCCcCCCCCccccccCCCCccc-----HHHHHHHHHHHHCCCcccc----ceEEcceEEEEEecCCCc
Confidence 667999999998764 789999998 79999887 3888999999999987521 0123444454432 23
Q ss_pred EEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccC
Q 011579 417 RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (482)
Q Consensus 417 ~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (482)
...+++|.+.. .+.. .++..|+.+++|++++++..+
T Consensus 107 ~~~~~~f~~~~--~~~~----~~~~~Ev~~~~W~~~~el~~~ 142 (158)
T TIGR02150 107 HELCPVFFARA--PVPL----NPNPEEVAEYRWVSLEELKEI 142 (158)
T ss_pred EEEEEEEEEec--CCcc----cCChhHeeeEEEeCHHHHHHH
Confidence 34456666642 2211 233458889999999888653
No 73
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.11 E-value=1.9e-10 Score=101.42 Aligned_cols=102 Identities=15% Similarity=0.095 Sum_probs=64.7
Q ss_pred cCCCeEEEEecCCCC-CCCcccccC-ccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEE
Q 011579 342 QPDGVFILVKRRDEG-LLAGLWEFP-SIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLK 419 (482)
Q Consensus 342 ~~~gkvLl~KRp~~g-llaGLWEFP-ggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~ 419 (482)
+.+|+||+.||...+ .++|.|+|| ||+++.||++ +|+.||+.||.|+++... ....++.+.+... ....
T Consensus 9 ~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~----~aa~REl~EEtGl~~~~~----~~~~~~~~~~~~~-~~~~ 79 (127)
T cd04693 9 NSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS----TAAEREVKEELGLELDFS----ELRPLFRYFFEAE-GFDD 79 (127)
T ss_pred eCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH----HHHHHHHHHHhCCCcChh----hcEEEEEEEeecC-CeEE
Confidence 567899999998754 578999998 9999998754 899999999999987510 0112233222221 1222
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCeeeeeccCCccc
Q 011579 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS 457 (482)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~ 457 (482)
+++|.+.. ..+.. .++..|+.+++|++++++..
T Consensus 80 ~~~~~~~~-~~~~~----~~~~~E~~~~~w~~~~el~~ 112 (127)
T cd04693 80 YYLFYADV-EIGKL----ILQKEEVDEVKFVSKDEIDG 112 (127)
T ss_pred EEEEEecC-ccccc----ccCHHHhhhEEEeCHHHHHH
Confidence 23333321 11111 12335678899999887755
No 74
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.09 E-value=5.1e-10 Score=98.67 Aligned_cols=108 Identities=14% Similarity=0.091 Sum_probs=75.8
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEE----EEcCceEEE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFV----HIFSHIRLK 419 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~----H~fth~~l~ 419 (482)
+.++|+.||+. |.|+||||.++++|++ .+|+.||+.||+|+++. ....++.+. +.+......
T Consensus 16 ~~~vLl~~~~~-----~~w~~PgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~ 81 (130)
T cd03428 16 EIEYLLLQASY-----GHWDFPKGHVEPGEDD---LEAALRETEEETGITAE------QLFIVLGFKETLNYQVRGKLKT 81 (130)
T ss_pred CceEEEEEccC-----CcCcCCcCCCCCCCCH---HHHHHHHHHHHHCCChh------hhhhhccceeEEEccccCcceE
Confidence 45899999985 8999999999999887 89999999999999986 223332222 222223344
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhc
Q 011579 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMG 470 (482)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~ 470 (482)
+++|.+.+ ...... ... .+..++.|++.+++.++..++.++.+++.
T Consensus 82 ~~~f~~~~--~~~~~~--~~~-~E~~~~~W~~~~e~~~~~~~~~~~~~~~~ 127 (130)
T cd03428 82 VTYFLAEL--RPDVEV--KLS-EEHQDYRWLPYEEALKLLTYEDLKAVLDK 127 (130)
T ss_pred EEEEEEEe--CCCCcc--ccc-cceeeEEeecHHHHHHHcCchhHHHHHHH
Confidence 45666643 321111 112 46778999999999998888888888764
No 75
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.05 E-value=7.4e-10 Score=102.66 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=70.6
Q ss_pred cCCCeEEEEecCCCC-CCCcccccC-ccccCCCCChhhHHHHHHHHHHhhcCCCCCCCccccccccc-ccEEEEcC--c-
Q 011579 342 QPDGVFILVKRRDEG-LLAGLWEFP-SIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDV-GEFVHIFS--H- 415 (482)
Q Consensus 342 ~~~gkvLl~KRp~~g-llaGLWEFP-ggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l-~~v~H~ft--h- 415 (482)
+.+|++|+.||..+. .++|+|++| ||.++.||++ ++|+.||+.||+|+++. ....+ +.+.+... .
T Consensus 39 ~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~---~eaa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~ 109 (165)
T cd02885 39 NSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGV---KDAAQRRLREELGITGD------LLELVLPRFRYRAPDDGG 109 (165)
T ss_pred cCCCcEEEEeccCCCccCCCcccccccCCCCCCCCH---HHHHHHHHHHHhCCCcc------chhhccceEEEEEEcCCC
Confidence 567899999999765 789999997 8999999887 89999999999999975 22232 44443321 1
Q ss_pred --eEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccC
Q 011579 416 --IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (482)
Q Consensus 416 --~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (482)
.+...++|.+. ..+.. .+...|+.+++|++++++.++
T Consensus 110 ~~~~~i~~~f~~~--~~~~~----~~~~~Ev~~~~w~~~~el~~~ 148 (165)
T cd02885 110 LVEHEIDHVFFAR--ADVTL----IPNPDEVSEYRWVSLEDLKEL 148 (165)
T ss_pred ceeeEEEEEEEEE--eCCCC----CCCccceeEEEEECHHHHHHH
Confidence 11123455553 23221 123467788999999988653
No 76
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.05 E-value=5.4e-10 Score=101.00 Aligned_cols=104 Identities=20% Similarity=0.171 Sum_probs=71.3
Q ss_pred CCeEEEEecCCC-CCCCccccc-CccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCc-----e
Q 011579 344 DGVFILVKRRDE-GLLAGLWEF-PSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH-----I 416 (482)
Q Consensus 344 ~gkvLl~KRp~~-gllaGLWEF-Pggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth-----~ 416 (482)
++++|+.+|... ..++|.|+| |||+++.||++ ++|+.||+.||+|+.+... ....++.+.+.+.+ .
T Consensus 16 ~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~---~~aa~REl~EEtGl~~~~~----~l~~~~~~~~~~~~~~~~~~ 88 (144)
T cd04692 16 KGYVLLQKRSANKKTYPGLWDISSAGHILAGETP---LEDGIRELEEELGLDVSAD----DLIPLGTFKIEYDHIGKLID 88 (144)
T ss_pred CCEEEEEecCCCCCCCCCccccccCcccCCCCCH---HHHHHHHHHHHhCCCCChH----HeEEeeEEEEeccccCCCcc
Confidence 389999999875 478999999 59999999887 8999999999999986410 12356667776651 1
Q ss_pred EEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCccc
Q 011579 417 RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS 457 (482)
Q Consensus 417 ~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~ 457 (482)
.-..++|.+......+. ..+++.|+.+++|++.+++.+
T Consensus 89 ~~~~~~f~~~~~~~~~~---~~~~~~E~~~~~W~~~~el~~ 126 (144)
T cd04692 89 REFHHVYLYELKVPLEE---FTLQKEEVAGVVLIPLDEFAE 126 (144)
T ss_pred ceEEEEEEEeccCChhh---cCCChhHhheEEEECHHHHHH
Confidence 11235566643111011 123346788999999888754
No 77
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.04 E-value=8.9e-10 Score=97.24 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=68.8
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEE--EEcC---c-
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFV--HIFS---H- 415 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~--H~ft---h- 415 (482)
+.++++|+.+|... |.|+||||.++.||+. .+|+.||+.||+|+++. ....++.+. +.|. +
T Consensus 16 ~~~~~vLL~~r~~~----~~w~~PgG~v~~gEt~---~~aa~REl~EE~Gi~~~------~~~~~~~~~~~~~~~~~~~~ 82 (132)
T cd04677 16 NEQGEVLLQKRSDT----GDWGLPGGAMELGESL---EETARRELKEETGLEVE------ELELLGVYSGKEFYVKPNGD 82 (132)
T ss_pred eCCCCEEEEEecCC----CcEECCeeecCCCCCH---HHHHHHHHHHHhCCeee------eeEEEEEecCCceeecCCCC
Confidence 55689999999754 7899999999999887 89999999999999875 223332221 1111 1
Q ss_pred --eEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHH
Q 011579 416 --IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVM 468 (482)
Q Consensus 416 --~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil 468 (482)
..+...++.+. ..+... .....+...++|++.+++..+-.+ ..+.+|
T Consensus 83 ~~~~~~~~~~~~~--~~~~~~---~~~~~e~~~~~W~~~~e~~~~~~~-~~~~~~ 131 (132)
T cd04677 83 DEQYIVTLYYVTK--VFGGKL---VPDGDETLELKFFSLDELPELINP-QHKEML 131 (132)
T ss_pred cEEEEEEEEEEEe--ccCCcc---cCCCCceeeEEEEChhHCccchhH-HHHHhh
Confidence 12222233332 222111 123356778999999999877655 344333
No 78
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.02 E-value=6.1e-10 Score=99.26 Aligned_cols=109 Identities=9% Similarity=0.032 Sum_probs=73.2
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
+.++++|+.||... -.|.|+||||.++.||+. ++|+.||+.||+|+++. ....++...+.+.+. .++
T Consensus 9 ~~~~~vLL~~r~~~--~~~~w~lPgG~ie~gEt~---~~aA~REl~EEtGl~~~------~~~~l~~~~~~~~~~--~~~ 75 (131)
T cd03429 9 DGGDRILLARQPRF--PPGMYSLLAGFVEPGESL---EEAVRREVKEEVGIRVK------NIRYVGSQPWPFPSS--LML 75 (131)
T ss_pred eCCCEEEEEEecCC--CCCcCcCCcccccCCCCH---HHHHhhhhhhccCceee------eeEEEeecCCCCCce--EEE
Confidence 44589999999643 389999999999999877 89999999999999875 233444433334332 234
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCccc----CCCChHhHHHH
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS----MGLTSGVRKVM 468 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~----~~fp~a~~kil 468 (482)
+|.+. ..++.. ...+.++.++.|++.+++.+ ++..++..++.
T Consensus 76 ~f~~~--~~~~~~---~~~~~E~~~~~w~~~~el~~~~~~~~~~~~~~~~~ 121 (131)
T cd03429 76 GFTAE--ADSGEI---VVDDDELEDARWFSRDEVRAAGEGLPELPPPGSIA 121 (131)
T ss_pred EEEEE--EcCCcc---cCCchhhhccEeecHHHHhhcccCCccCCCcchHH
Confidence 56664 333211 12335677899999999877 44444444433
No 79
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.02 E-value=1e-09 Score=99.79 Aligned_cols=99 Identities=15% Similarity=0.120 Sum_probs=63.4
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEEEE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVE 423 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~~~ 423 (482)
+++||+.||... |.|+||||+++.||++ .+|+.||+.||.|+++... ........+.+++.. +++|
T Consensus 13 ~~~vLLvr~~~~----~~W~lPGG~ve~gEs~---~~AA~REl~EETGl~v~~~-----~~~~~~~~~~~~~~~--~~~f 78 (145)
T cd03672 13 LDKVLLVKGWKS----KSWSFPKGKINKDEDD---HDCAIREVYEETGFDISKY-----IDKDDYIELIIRGQN--VKLY 78 (145)
T ss_pred CCEEEEEEecCC----CCEECCCccCCCCcCH---HHHHHHHHHHhhCccceec-----cccceeeecccCCcE--EEEE
Confidence 479999998644 3899999999999887 8999999999999987520 000111122233333 3445
Q ss_pred EEEEEEeCCccccccc-ccCCCCeeeeeccCCcccCC
Q 011579 424 LLVLCIKGGIDKWVEK-QDKGTLSWKCVDGGTLASMG 459 (482)
Q Consensus 424 ~~~~~~~~~~~~~~~~-~~~e~~~~~Wv~~~eL~~~~ 459 (482)
.+. .+.+... ..+ ...|..+++|++.+++.++.
T Consensus 79 ~~~-~~~~~~~--~~~~~~~E~~~~~Wv~~~el~~~~ 112 (145)
T cd03672 79 IVP-GVPEDTP--FEPKTRKEISKIEWFDIKDLPTKK 112 (145)
T ss_pred EEe-cCCCCcc--cCcCChhhhheEEEeeHHHhhhhh
Confidence 443 1222111 011 23578899999999987753
No 80
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.00 E-value=2e-09 Score=94.97 Aligned_cols=95 Identities=20% Similarity=0.153 Sum_probs=69.7
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccc-cccccEEEEcCc----eEE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILR-EDVGEFVHIFSH----IRL 418 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~-~~l~~v~H~fth----~~l 418 (482)
.+++|+.+|... |.|.||||+++.+|++ ++|+.||+.||.|+++. .. ..++.+.|.+++ .+.
T Consensus 14 ~~~vLLv~~~~~----~~w~~PgG~ve~~E~~---~~aa~RE~~EEtG~~~~------~~~~~l~~~~~~~~~~~~~~~~ 80 (122)
T cd04666 14 EVEVLLVTSRRT----GRWIVPKGGPEKDESP---AEAAAREAWEEAGVRGK------IGKRPLGRFEYRKRSKNRPPRC 80 (122)
T ss_pred ceEEEEEEecCC----CeEECCCCCcCCCCCH---HHHHHHHHHHHhCCccc------ccceEEEEEEeeecCCCCCceE
Confidence 468999998643 8999999999999887 89999999999999875 34 678888888775 255
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcc
Q 011579 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLA 456 (482)
Q Consensus 419 ~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~ 456 (482)
..++|.+. ..+... ..+..+....+|++++++.
T Consensus 81 ~~~~f~~~--~~~~~~---~~~~~e~~~~~W~~~~ea~ 113 (122)
T cd04666 81 EVAVFPLE--VTEELD---EWPEMHQRKRKWFSPEEAA 113 (122)
T ss_pred EEEEEEEE--Eecccc---CCcccCceEEEEecHHHHH
Confidence 55666664 333211 1122455689999988763
No 81
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.99 E-value=1.9e-09 Score=95.96 Aligned_cols=101 Identities=10% Similarity=0.054 Sum_probs=63.6
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEc----C---c
Q 011579 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF----S---H 415 (482)
Q Consensus 343 ~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~f----t---h 415 (482)
.+|+||+.||... |.|+||||.++.+|++ .+|+.||+.||.|+.+.. ....++.+.+.+ + +
T Consensus 9 ~~~~vLLv~~~~~----~~w~lPgG~ve~gEt~---~~aa~REl~EEtGl~~~~-----~~~~l~~~~~~~~~~~~~~~~ 76 (131)
T cd04686 9 QGDKILLLYTKRY----GDYKFPGGGVEKGEDH---IEGLIRELQEETGATNIR-----VIEKFGTYTERRPWRKPDADI 76 (131)
T ss_pred ECCEEEEEEEcCC----CcEECccccCCCCCCH---HHHHHHHHHHHHCCcccc-----cceEEEEEEeeccccCCCCce
Confidence 3689999998653 5799999999999887 899999999999998621 234555554322 2 2
Q ss_pred eEEEEEEEEEEEEEeCCc--ccccccccCCCCeeeeeccCCccc
Q 011579 416 IRLKVHVELLVLCIKGGI--DKWVEKQDKGTLSWKCVDGGTLAS 457 (482)
Q Consensus 416 ~~l~L~~~~~~~~~~~~~--~~~~~~~~~e~~~~~Wv~~~eL~~ 457 (482)
++...++|.|.+ .+.. ..+...+......++|++++++..
T Consensus 77 ~~~~~~~~~~~~--~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~ 118 (131)
T cd04686 77 FHMISYYYLCEV--DAELGAQQLEDYEAELGMKPIWINIHEAIE 118 (131)
T ss_pred eEEEEEEEEEEE--cCCcCCcccchhhHhcCCCcEEecHHHHHH
Confidence 233456677753 3211 111000101123479999887644
No 82
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.96 E-value=8.3e-09 Score=90.76 Aligned_cols=97 Identities=13% Similarity=0.001 Sum_probs=58.4
Q ss_pred eEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCccccccccccc-EEEEcCceEEEEEEEE
Q 011579 346 VFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGE-FVHIFSHIRLKVHVEL 424 (482)
Q Consensus 346 kvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~-v~H~fth~~l~L~~~~ 424 (482)
++|+.+|... ...|.|+||||+++.+|+. ++|+.||+.||.|+.+. . ..+.. ..|..+...+.+..|.
T Consensus 16 ~~lL~~r~~~-~~~~~w~lPgG~ve~~E~~---~~aa~REl~EE~g~~~~------~-~~l~~~~~~~~~~~~~~~~~~~ 84 (118)
T cd04674 16 GLLVIRRGIE-PGRGKLALPGGFIELGETW---QDAVARELLEETGVAVD------P-ADIRLFDVRSAPDGTLLVFGLL 84 (118)
T ss_pred CEEEEEeecC-CCCCeEECCceecCCCCCH---HHHHHHHHHHHHCCccc------c-cEEEEEEEEecCCCeEEEEEEE
Confidence 4555566543 3589999999999999877 89999999999999874 1 11222 2344444444444333
Q ss_pred EEEEEeCCcccccccccCCCCeeeeeccCCcc
Q 011579 425 LVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLA 456 (482)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~ 456 (482)
......+ ... .....|+++|.|+....-.
T Consensus 85 ~~~~~~~-~~~--~~~~~E~~~~~~~~~~~~~ 113 (118)
T cd04674 85 PERRAAD-LPP--FEPTDETTERAVVTAPSEL 113 (118)
T ss_pred ecccccc-CCC--CCCCcceeeEEEccCCccc
Confidence 3212222 111 1223577778777654433
No 83
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=98.95 E-value=2.2e-09 Score=98.73 Aligned_cols=115 Identities=17% Similarity=0.067 Sum_probs=71.2
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccE----EEEcCce-
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEF----VHIFSHI- 416 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v----~H~fth~- 416 (482)
+.+|++|+.||... +|+|+||||.++++|+. ++|+.||+.||.|+++. ....++.. .+.|+..
T Consensus 17 ~~~g~vLL~~r~~~---~~~w~~P~G~~~~gE~~---~~aa~REl~EEtG~~~~------~~~~~~~~~~~~~y~~~~~~ 84 (156)
T PRK00714 17 NRQGQVFWGRRIGQ---GHSWQFPQGGIDPGETP---EQAMYRELYEEVGLRPE------DVEILAETRDWLRYDLPKRL 84 (156)
T ss_pred ecCCEEEEEEEcCC---CCeEECCcccCCCCcCH---HHHHHHHHHHHhCCCcc------ceEEEEEcCCeEEecCcHHH
Confidence 56789999999743 58999999999999877 89999999999999875 22233322 2222210
Q ss_pred ------E---EEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHh
Q 011579 417 ------R---LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMM 469 (482)
Q Consensus 417 ------~---l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~ 469 (482)
. -..++|.+..........+......|+.+++|++.+++.++-++.. +.++.
T Consensus 85 ~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~~~~-r~~~~ 145 (156)
T PRK00714 85 VRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVVPFK-RDVYR 145 (156)
T ss_pred hhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhchhhh-HHHHH
Confidence 0 0234566542111111111011224778899999999988654432 44443
No 84
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.91 E-value=4.6e-09 Score=94.19 Aligned_cols=107 Identities=17% Similarity=0.171 Sum_probs=69.6
Q ss_pred cCCCeEEEEecCCCC-CCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCce----
Q 011579 342 QPDGVFILVKRRDEG-LLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHI---- 416 (482)
Q Consensus 342 ~~~gkvLl~KRp~~g-llaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~---- 416 (482)
+.+|++|+.+|..+. ..+|.|+||||.++.+|+. .+|+.||+.||+|+++.. ....+....+.|++.
T Consensus 9 ~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~---~~a~~Re~~EE~G~~~~~-----~~~~~~~~~~~f~~~~~~~ 80 (133)
T cd04685 9 DPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESP---EQAARRELREETGITVAD-----LGPPVWRRDAAFTFLGVDG 80 (133)
T ss_pred cCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCH---HHHHHHHHHHHHCCcccc-----ccceEEEEEEEEEecCccc
Confidence 568899999987653 5789999999999999877 899999999999998731 223333334444322
Q ss_pred EEEEEEEEEEEEEeCCcccc---cccccCCCCeeeeeccCCcccC
Q 011579 417 RLKVHVELLVLCIKGGIDKW---VEKQDKGTLSWKCVDGGTLASM 458 (482)
Q Consensus 417 ~l~L~~~~~~~~~~~~~~~~---~~~~~~e~~~~~Wv~~~eL~~~ 458 (482)
+-..++|.+.+ .+..... ...+..+...++|+++++|.++
T Consensus 81 ~~~~~~f~~~~--~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 81 RQEERFFLART--PRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred eeeEEEEEEEc--CCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 11234555542 2211110 0111123457899999999887
No 85
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=98.88 E-value=8.1e-09 Score=97.53 Aligned_cols=114 Identities=11% Similarity=0.125 Sum_probs=74.2
Q ss_pred cCCCeEEEEecCCCC-CCCcccccC-ccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEc--Cce-
Q 011579 342 QPDGVFILVKRRDEG-LLAGLWEFP-SIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF--SHI- 416 (482)
Q Consensus 342 ~~~gkvLl~KRp~~g-llaGLWEFP-ggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~f--th~- 416 (482)
+.+|+||+.||+.++ .|.|.|.+| ||.++.||++ ++|+.||+.||+|+++.. ....++.+.+.+ +..
T Consensus 43 ~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~---~~aa~REl~EEtGl~~~~-----~~~~~~~~~~~~~~~~~~ 114 (184)
T PRK03759 43 DADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESL---EDAVIRRCREELGVEITD-----LELVLPDFRYRATDPNGI 114 (184)
T ss_pred cCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCH---HHHHHHHHHHHhCCCccc-----cccccceEEEEEecCCCc
Confidence 567899999998654 678999997 8999999887 899999999999998751 111223333221 111
Q ss_pred --EEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCccc------CCCChHhHHHHh
Q 011579 417 --RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS------MGLTSGVRKVMM 469 (482)
Q Consensus 417 --~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~------~~fp~a~~kil~ 469 (482)
.-..++|.+. ..+.. .+...|..+++|++++++.+ ..+.+..+.++.
T Consensus 115 ~~~~~~~vf~~~--~~~~~----~~~~~Ev~~~~W~~~~el~~~i~~~~~~~~~~l~~~~~ 169 (184)
T PRK03759 115 VENEVCPVFAAR--VTSAL----QPNPDEVMDYQWVDPADLLRAVDATPWAFSPWMVLQAA 169 (184)
T ss_pred eeeEEEEEEEEE--ECCCC----CCChhHeeeEEEECHHHHHHHHHhCCcccChHHHHHHH
Confidence 1123456654 23321 12335678899999998844 345555555544
No 86
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=98.86 E-value=1.2e-08 Score=105.38 Aligned_cols=116 Identities=21% Similarity=0.243 Sum_probs=78.8
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCccccccccccc--EEEEcC--ce--
Q 011579 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGE--FVHIFS--HI-- 416 (482)
Q Consensus 343 ~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~--v~H~ft--h~-- 416 (482)
.+|++||.+|..+ ...|+|.||||.++.||+. ++|+.||+.||.|+++.. ....+. ..+.|+ +.
T Consensus 212 ~~g~VLLvrR~~~-p~~g~W~lPGG~ve~gEt~---~~Aa~REl~EETGl~v~~------~~l~~~~~~~~~f~~p~r~~ 281 (340)
T PRK05379 212 QSGHVLLVRRRAE-PGKGLWALPGGFLEQDETL---LDACLRELREETGLKLPE------PVLRGSIRDQQVFDHPGRSL 281 (340)
T ss_pred ECCEEEEEEecCC-CCCCeEECCcccCCCCCCH---HHHHHHHHHHHHCCcccc------cccceeeeeeEEEcCCCCCC
Confidence 3689999999753 4589999999999999877 899999999999998742 111121 223333 21
Q ss_pred --EEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccC--CCChHhHHHHhcc
Q 011579 417 --RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM--GLTSGVRKVMMGK 471 (482)
Q Consensus 417 --~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~--~fp~a~~kil~~L 471 (482)
+...++|.+.+. .+..... ..+.++.+++|++.+++..+ .+...+..||+.+
T Consensus 282 ~~~~i~~~f~~~~~-~~~~~~~--~~~de~~~~~W~~~~el~~~~~~~~~dh~~ii~~~ 337 (340)
T PRK05379 282 RGRTITHAFLFEFP-AGELPRV--KGGDDADKARWVPLAELLAMRDRMFEDHFQIITHF 337 (340)
T ss_pred CCcEEEEEEEEEec-CCccCcc--CCCCceeeEEEEEHHHhhhhhhhhhhHHHHHHHHH
Confidence 233456666431 2211111 12356788999999999886 5778888888764
No 87
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=98.84 E-value=1.4e-08 Score=100.89 Aligned_cols=102 Identities=9% Similarity=0.006 Sum_probs=75.5
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEEE
Q 011579 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHV 422 (482)
Q Consensus 343 ~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~~ 422 (482)
.++++|+.+|.... .|+|++|+|.+|.||+. ++|+.||+.||.|+++. ..+.++...+.|+|.. ++.
T Consensus 141 ~~~~iLL~rr~~~~--~g~wslPgG~vE~GEs~---eeAa~REv~EEtGl~v~------~~~~~~s~~~~~p~~l--m~~ 207 (256)
T PRK00241 141 RGDEILLARHPRHR--NGVYTVLAGFVEVGETL---EQCVAREVMEESGIKVK------NLRYVGSQPWPFPHSL--MLG 207 (256)
T ss_pred eCCEEEEEEccCCC--CCcEeCcccCCCCCCCH---HHHhhhhhhhccCceee------eeEEEEeEeecCCCeE--EEE
Confidence 46899999987543 89999999999999887 89999999999999876 3456666666777653 456
Q ss_pred EEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCCh
Q 011579 423 ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTS 462 (482)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~ 462 (482)
|.+.. .++.. .....|..+.+|++.+++..++-..
T Consensus 208 f~a~~--~~~~~---~~~~~Ei~~a~W~~~del~~lp~~~ 242 (256)
T PRK00241 208 FHADY--DSGEI---VFDPKEIADAQWFRYDELPLLPPSG 242 (256)
T ss_pred EEEEe--cCCcc---cCCcccEEEEEEECHHHCcccCCch
Confidence 66643 33222 1223466789999999998766443
No 88
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=98.82 E-value=9.3e-09 Score=97.19 Aligned_cols=102 Identities=19% Similarity=0.086 Sum_probs=73.2
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
..++++|+.++...+...+.||||+|.+|+||++ ++|+.||+.||.|+.+. ..+.++.+.+..+...-.++
T Consensus 56 ~~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~---~~aA~REl~EEtG~~~~------~l~~l~~~~~~~~~~~~~~~ 126 (185)
T PRK11762 56 LDDDTLLLIREYAAGTERYELGFPKGLIDPGETP---LEAANRELKEEVGFGAR------QLTFLKELSLAPSYFSSKMN 126 (185)
T ss_pred eCCCEEEEEEeecCCCCCcEEEccceeCCCCCCH---HHHHHHHHHHHHCCCCc------ceEEEEEEecCCCccCcEEE
Confidence 3467888888877778889999999999999887 89999999999999986 45677777666666666677
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcc
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLA 456 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~ 456 (482)
+|.+.. ..+... .....|..++.|++.+++.
T Consensus 127 ~f~a~~-~~~~~~---~~~e~E~i~~~~~~~~e~~ 157 (185)
T PRK11762 127 IVLAED-LYPERL---EGDEPEPLEVVRWPLADLD 157 (185)
T ss_pred EEEEEc-cccccC---CCCCCceeEEEEEcHHHHH
Confidence 777642 222111 1122344567788776653
No 89
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=98.74 E-value=5.1e-08 Score=92.76 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=70.9
Q ss_pred CCCeEEEEecCCC-CCCCcccccCccccCCC-CChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEE
Q 011579 343 PDGVFILVKRRDE-GLLAGLWEFPSIILDGE-TDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKV 420 (482)
Q Consensus 343 ~~gkvLl~KRp~~-gllaGLWEFPggkve~~-e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L 420 (482)
.++.+|+.||... ..+.|.|+||||++|.+ +++ +++..||++||.|+.+. ....++.+...++...+.+
T Consensus 42 ~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~---~~tA~REl~EEtGl~~~------~~~~lg~l~~~~~~~~~~~ 112 (190)
T PRK10707 42 PQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASL---IATALREAQEEVAIPPS------AVEVIGVLPPVDSSTGYQV 112 (190)
T ss_pred CCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccH---HHHHHHHHHHHHCCCcc------ceEEEEEeeeeeccCCcEE
Confidence 3569999998865 36899999999999965 445 78999999999999986 4466777665555444555
Q ss_pred EEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccC
Q 011579 421 HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (482)
+++.+.+ ...... .+...|.....|++.+++.+.
T Consensus 113 ~~~v~~~--~~~~~~--~~d~~Ev~~v~~vpl~e~~~~ 146 (190)
T PRK10707 113 TPVVGII--PPDLPY--RANEDEVAAVFEMPLAEALHL 146 (190)
T ss_pred EEEEEEE--CCCCCC--CCChhhhheEEEEeHHHHhCc
Confidence 6555532 211111 122346677889998887554
No 90
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=98.69 E-value=7.8e-08 Score=87.59 Aligned_cols=105 Identities=20% Similarity=0.180 Sum_probs=66.9
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEc---CceEEE
Q 011579 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF---SHIRLK 419 (482)
Q Consensus 343 ~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~f---th~~l~ 419 (482)
.+|++|+.||... ..+|.|-+|||.+|.||+. ++|+.||++||.|+++. ..+.+..+.-.- ..+++.
T Consensus 19 ~~~~iLLvrR~~~-p~~g~WalPGG~ve~GEt~---eeaa~REl~EETgL~~~------~~~~~~v~~~~~rd~r~~~v~ 88 (145)
T COG1051 19 RNGRILLVRRANE-PGAGYWALPGGFVEIGETL---EEAARRELKEETGLRVR------VLELLAVFDDPGRDPRGHHVS 88 (145)
T ss_pred eCCEEEEEEecCC-CCCCcEeCCCccCCCCCCH---HHHHHHHHHHHhCCccc------ceeEEEEecCCCCCCceeEEE
Confidence 3569999999754 5889999999999999877 89999999999999975 223332222111 113333
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCCh
Q 011579 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTS 462 (482)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~ 462 (482)
+.++.+ ...|+... ....+.....|++.+++..+..+.
T Consensus 89 ~~~~~~--~~~g~~~~---~~~~d~~~~~~~~~~~l~~~~~~~ 126 (145)
T COG1051 89 FLFFAA--EPEGELLA---GDGDDAAEVGWFPLDELPELPLPL 126 (145)
T ss_pred EEEEEE--ecCCCccc---CChhhHhhcceecHhHcccccccc
Confidence 333333 22332111 111244568899999999854433
No 91
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.66 E-value=1.9e-07 Score=83.06 Aligned_cols=95 Identities=9% Similarity=-0.079 Sum_probs=60.4
Q ss_pred CeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEE--EEcCceEEEEEE
Q 011579 345 GVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFV--HIFSHIRLKVHV 422 (482)
Q Consensus 345 gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~--H~fth~~l~L~~ 422 (482)
.++|+.+.|. +.|+||||+++++|++ ++|+.||+.||.|+++.. ....+.... +.+++..+++++
T Consensus 14 ~~ll~~r~~~-----~~~~lPgG~ve~~E~~---~~aa~Rel~EEtGl~~~~-----~~~~~~~~~~~~~~~~~~~~l~~ 80 (126)
T cd04663 14 LELLVFEHPL-----AGFQIVKGTVEPGETP---EAAALRELQEESGLPSFL-----SDYILHVWERRFYQKRHFWHLTL 80 (126)
T ss_pred EEEEEEEcCC-----CcEECCCccCCCCCCH---HHHHHHHHHHHHCCeeee-----eeecceeeeCCEeeccEEEEEEE
Confidence 3788887764 3399999999999887 899999999999998620 111112111 224666666655
Q ss_pred EEEEE----EEeCCcccccccccCCCCeee--eeccCCcccC
Q 011579 423 ELLVL----CIKGGIDKWVEKQDKGTLSWK--CVDGGTLASM 458 (482)
Q Consensus 423 ~~~~~----~~~~~~~~~~~~~~~e~~~~~--Wv~~~eL~~~ 458 (482)
+.+.. .+.+ .+++.+++.+. |++.+++...
T Consensus 81 ~~~~~~~~~~~~~------~~~~~E~~~i~~~Wv~l~~~~~~ 116 (126)
T cd04663 81 CEVDQDLPDSWVH------FVQDDGGHEFRFFWVDLASCLDE 116 (126)
T ss_pred EEecCCCcccccC------cccCCCCceEEEEEEcccccccc
Confidence 44310 1111 12335666676 9999998553
No 92
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=98.64 E-value=1.9e-07 Score=86.78 Aligned_cols=121 Identities=22% Similarity=0.320 Sum_probs=97.4
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCc--HH-HHHHHHHHHHHHHHc-----
Q 011579 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGY--YR-RARFLLEGAKMIVAE----- 185 (482)
Q Consensus 114 ~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~eel~~~i~~lG~--~~-RA~~L~~~a~~i~~~----- 185 (482)
.+-|.-|.=+|+.+|++...+..+-..+-+. +.-++.+||.+.++.+|| |+ ||++|+++-+.+.+-
T Consensus 37 e~lf~ELsFCILTANsSA~~~~~~q~~lG~g------fly~~~eEL~e~Lk~~g~Rf~n~raeyIVeaR~~~~~lk~~v~ 110 (210)
T COG1059 37 EDLFKELSFCILTANSSATMGLRAQNELGDG------FLYLSEEELREKLKEVGYRFYNVRAEYIVEAREKFDDLKIIVK 110 (210)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHhccc------cccCCHHHHHHHHHHhcchhcccchHHHHHHHHHHHHHHHHHh
Confidence 5688999999999999999998877766544 445689999999999976 56 999999987766431
Q ss_pred CCCCCC-chhhhh-cCCCCcHHHHHHHH-HhhcCCeeeeecCchhhhHHhhhcccCCCC
Q 011579 186 GDGFPN-TVSDLR-KVPGIGNYTAGAIA-SIAFKEVVPVVDGNVIRVLARLKAISANPK 241 (482)
Q Consensus 186 ~g~~p~-~~~~L~-~lpGIG~~TA~~il-~fa~~~p~~~vD~~v~Rvl~Rl~~~~~~~~ 241 (482)
....+. .++.|. .++|||-|-|+.+| ..++ ....++|.|+.|-+.|.|.++..|+
T Consensus 111 ~~~~~~vaRE~Lv~nikGiGyKEASHFLRNVG~-~D~AIlDrHIlr~l~r~g~i~e~~k 168 (210)
T COG1059 111 ADENEKVARELLVENIKGIGYKEASHFLRNVGF-EDLAILDRHILRWLVRYGLIDENPK 168 (210)
T ss_pred cCcchHHHHHHHHHHcccccHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHhcccccCcc
Confidence 122333 678888 89999999999998 4455 5678899999999999999987654
No 93
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=98.57 E-value=2.8e-07 Score=86.57 Aligned_cols=104 Identities=12% Similarity=-0.067 Sum_probs=69.4
Q ss_pred CCeEEEEecCCCC-CCCccc-ccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcC--c---e
Q 011579 344 DGVFILVKRRDEG-LLAGLW-EFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS--H---I 416 (482)
Q Consensus 344 ~gkvLl~KRp~~g-llaGLW-EFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~ft--h---~ 416 (482)
++++|+.||...+ .+.|+| ++|+|.++.||++ .+|+.||+.||+|+++.... ....++.+...|. . .
T Consensus 47 ~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~---~~aA~REl~EE~Gl~~~~~~---~l~~~g~~~~~~~~~~~~~~ 120 (180)
T cd03676 47 GLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGP---EETLVKECDEEAGLPEDLVR---QLKPVGVVSYLREGEAGGLQ 120 (180)
T ss_pred CeEEEEEeccCCCCCCCCceeeecccCCCCCCCH---HHHHHHHHHHHhCCCHHHHh---hceeccEEEEEEEcCCCcEe
Confidence 4899999999865 689999 6999999999887 89999999999999875110 0123444444442 1 1
Q ss_pred EEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCccc
Q 011579 417 RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS 457 (482)
Q Consensus 417 ~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~ 457 (482)
+...++|.+. +..... ..++..|..++.|++.+++..
T Consensus 121 ~e~~~~f~~~--~~~~~~--~~~~~~Ev~~~~~~~~~el~~ 157 (180)
T cd03676 121 PEVEYVYDLE--LPPDFI--PAPQDGEVESFRLLTIDEVLR 157 (180)
T ss_pred eeEEEEEEEE--cCCCCe--eCCCCCcEeEEEEECHHHHHH
Confidence 1234555543 222111 123446778899999888754
No 94
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.56 E-value=5.3e-07 Score=80.09 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=40.4
Q ss_pred CCeEEEEecCCC---CCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCC
Q 011579 344 DGVFILVKRRDE---GLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPR 395 (482)
Q Consensus 344 ~gkvLl~KRp~~---gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~ 395 (482)
..++||.+|+.. ..-.|.|+||||.++.+|++ .+++.||+.||+|+.+.
T Consensus 14 ~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~---~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 14 RIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDP---LLAAKREFSEETGFCVD 65 (126)
T ss_pred cEEEEEEEccCccccCCCCCEEECCcccCCCCcCH---HHHHHHHHHHHhCCcce
Confidence 457999987542 23468899999999999887 89999999999999864
No 95
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.55 E-value=6.1e-07 Score=78.92 Aligned_cols=94 Identities=17% Similarity=0.042 Sum_probs=61.7
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEEE
Q 011579 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHV 422 (482)
Q Consensus 343 ~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~~ 422 (482)
.++++|+.+|. .+-|+||||+++.+|++ ++|+.||+.||.|+.+. ....++.+.-.........++
T Consensus 9 ~~~~vLl~~~~-----~~~w~lPgG~ve~gE~~---~~aa~REl~EE~G~~~~------~~~~l~~~~~~~~~~~~~~~~ 74 (118)
T cd04665 9 YDDGLLLVRHK-----DRGWEFPGGHVEPGETI---EEAARREVWEETGAELG------SLTLVGYYQVDLFESGFETLV 74 (118)
T ss_pred ECCEEEEEEeC-----CCEEECCccccCCCCCH---HHHHHHHHHHHHCCccC------ceEEEEEEEecCCCCcEEEEE
Confidence 36799999885 35699999999999887 89999999999999875 334555433222111333455
Q ss_pred EEEEEEEeCCcccccccccCCCCeeeeeccCCc
Q 011579 423 ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTL 455 (482)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL 455 (482)
|.+.+ ..+... ....|.....|++....
T Consensus 75 y~a~~-~~~~~~----~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 75 YPAVS-AQLEEK----ASYLETDGPVLFKNEPE 102 (118)
T ss_pred EEEEE-Eecccc----cccccccCcEEeccCCc
Confidence 66643 222111 12367778889886544
No 96
>PLN02709 nudix hydrolase
Probab=98.47 E-value=4.9e-07 Score=87.65 Aligned_cols=104 Identities=17% Similarity=0.054 Sum_probs=69.3
Q ss_pred CCeEEEEecCCC-CCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEEE
Q 011579 344 DGVFILVKRRDE-GLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHV 422 (482)
Q Consensus 344 ~gkvLl~KRp~~-gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~~ 422 (482)
+-++|+.+|+.. +.++|.|.||||++|+++. +..++..||+.||+|+... ..+.++.....++...+.+++
T Consensus 50 ~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~--~~~~tAlRE~~EEiGl~~~------~v~vlg~L~~~~t~sg~~V~P 121 (222)
T PLN02709 50 ELRVILTKRSSTLSSHPGEVALPGGKRDEEDK--DDIATALREAREEIGLDPS------LVTIISVLEPFVNKKGMSVAP 121 (222)
T ss_pred ceEEEEEEcCCCCCCCCCCccCCCcccCCCCC--CHHHHHHHHHHHHHCCCch------heEEeeecCCeECCCCCEEEE
Confidence 348999999976 3589999999999998742 2368889999999999875 234555555555555566788
Q ss_pred EEEEEEEeCCcccccccccCCCCeeeeeccCCccc
Q 011579 423 ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS 457 (482)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~ 457 (482)
|...+.-.... . ..+...|...+-|++.+.|-+
T Consensus 122 ~V~~~~~~~~~-~-~~~np~EV~~vf~vPL~~ll~ 154 (222)
T PLN02709 122 VIGFLHDKKAF-K-PLPNPAEVEEIFDVPLEMFLK 154 (222)
T ss_pred EEEEecCCCCc-c-ccCChhhhheeEEecHHHHhC
Confidence 77643210111 1 012234666777887776643
No 97
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=98.36 E-value=1.3e-07 Score=62.87 Aligned_cols=27 Identities=44% Similarity=0.671 Sum_probs=23.8
Q ss_pred CCCCCchhhhhcCCCCcHHHHHHHHHh
Q 011579 187 DGFPNTVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 187 g~~p~~~~~L~~lpGIG~~TA~~il~f 213 (482)
|.+|.++++|++|||||+|||++|+.|
T Consensus 4 g~~pas~eeL~~lpGIG~~tA~~I~~~ 30 (30)
T PF00633_consen 4 GLIPASIEELMKLPGIGPKTANAILSF 30 (30)
T ss_dssp HHHTSSHHHHHTSTT-SHHHHHHHHHH
T ss_pred CcCCCCHHHHHhCCCcCHHHHHHHHhC
Confidence 457999999999999999999999986
No 98
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=98.32 E-value=1.2e-06 Score=83.03 Aligned_cols=104 Identities=7% Similarity=-0.028 Sum_probs=62.2
Q ss_pred CCCeEEEEecCCCCC-----CCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceE
Q 011579 343 PDGVFILVKRRDEGL-----LAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIR 417 (482)
Q Consensus 343 ~~gkvLl~KRp~~gl-----laGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~ 417 (482)
.++++|+.+.-..+. -.++||||+|.++++|++ ++|..||+.||.|+.+. ....++.+.-......
T Consensus 55 ~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~---~~aA~REl~EEtG~~~~------~~~~~~~~~~~~g~~~ 125 (185)
T TIGR00052 55 KKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESP---EDVARREAIEEAGYQVK------NLRKLLSFYSSPGGVT 125 (185)
T ss_pred CCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCH---HHHHHHHccccccceec------ceEEEEEEEcCCCCCc
Confidence 357888887644333 468999999999999887 89999999999999875 2233433221112223
Q ss_pred EEEEEEEEEEEEeCCccc-ccccccCCCCeeeeeccCCccc
Q 011579 418 LKVHVELLVLCIKGGIDK-WVEKQDKGTLSWKCVDGGTLAS 457 (482)
Q Consensus 418 l~L~~~~~~~~~~~~~~~-~~~~~~~e~~~~~Wv~~~eL~~ 457 (482)
-.+++|.+.+ .++... .......|.....|++.+++.+
T Consensus 126 ~~~~~f~a~~--~~~~~~~~~~~~~~E~ie~~~~~~~e~~~ 164 (185)
T TIGR00052 126 ELIHLFIAEV--DDNQAAGIGGGADEEEIEVLHLVFSQALQ 164 (185)
T ss_pred EEEEEEEEEE--chhhcCCCCCCCCccceEEEEeCHHHHHH
Confidence 4456777642 221110 0001113444567777665543
No 99
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=98.30 E-value=3e-06 Score=78.12 Aligned_cols=70 Identities=13% Similarity=0.073 Sum_probs=51.7
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEEEE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVE 423 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~~~ 423 (482)
++++|+.++.. ..||||||++++||++ ++|+.||+.||.|+.+. ....++.+.-.-.......++|
T Consensus 34 ~~~~LL~~~~~-----~~~elPgG~vE~gEt~---~eaA~REl~EETG~~~~------~~~~lg~~~~~~~~~~~~~~vf 99 (156)
T TIGR02705 34 KDQWLLTEHKR-----RGLEFPGGKVEPGETS---KEAAIREVMEETGAIVK------ELHYIGQYEVEGESTDFVKDVY 99 (156)
T ss_pred CCEEEEEEEcC-----CcEECCceecCCCCCH---HHHHHHHHHHHhCcEee------eeEEEEEEEecCCCcEEEEEEE
Confidence 56888887653 2499999999999888 89999999999999875 3456665444333345566777
Q ss_pred EEEE
Q 011579 424 LLVL 427 (482)
Q Consensus 424 ~~~~ 427 (482)
.+.+
T Consensus 100 ~A~~ 103 (156)
T TIGR02705 100 FAEV 103 (156)
T ss_pred EEEE
Confidence 7754
No 100
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.25 E-value=4.9e-06 Score=72.47 Aligned_cols=45 Identities=36% Similarity=0.643 Sum_probs=40.9
Q ss_pred CeEEEEecCCCCCCCcccccCccccCCCCChhhHHH-HHHHHHHhhcCCCCC
Q 011579 345 GVFILVKRRDEGLLAGLWEFPSIILDGETDITTRRE-AAECFLKKSFNLDPR 395 (482)
Q Consensus 345 gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~-AL~rel~Eelgi~~~ 395 (482)
+++|+.+|...+ |.|+||||+++.+|+. .+ |+.||+.||+|+.+.
T Consensus 24 ~~vl~~~~~~~~---~~~~~PgG~ve~~e~~---~~~aa~RE~~EEtGl~~~ 69 (161)
T COG0494 24 GEVLLAQRRDDG---GLWELPGGKVEPGEEL---PEEAAARELEEETGLRVK 69 (161)
T ss_pred CEEeEEEccccC---CceecCCcccCCCCch---HHHHHHHHHHHHhCCeee
Confidence 899999999887 9999999999998877 55 999999999999875
No 101
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=98.23 E-value=5.7e-06 Score=81.70 Aligned_cols=124 Identities=12% Similarity=0.062 Sum_probs=72.6
Q ss_pred cCCCeEEEEecCCC-CCCCcccccC-----ccccCCCC----------ChhhHHHHHHHHHHhhcCCCCCCCcccccccc
Q 011579 342 QPDGVFILVKRRDE-GLLAGLWEFP-----SIILDGET----------DITTRREAAECFLKKSFNLDPRNNCSIILRED 405 (482)
Q Consensus 342 ~~~gkvLl~KRp~~-gllaGLWEFP-----ggkve~~e----------~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~ 405 (482)
+.+|++||+||.+. ..++|+|+.. ++-.+.+| +.....+|..||+.||+|+.+.... ......
T Consensus 65 n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~~-~~~l~~ 143 (247)
T PLN02552 65 NSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDVP-VDQFTF 143 (247)
T ss_pred cCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCccccc-ccccee
Confidence 66799999999875 4799999555 33212111 1112468999999999999864100 000123
Q ss_pred cccEEEEcCc------------eEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccC-------CCChHhHH
Q 011579 406 VGEFVHIFSH------------IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM-------GLTSGVRK 466 (482)
Q Consensus 406 l~~v~H~fth------------~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~-------~fp~a~~k 466 (482)
++.+.+.... ..+. +++... ...++. ..++..|..+++|++++++..+ .|.+..+.
T Consensus 144 ~~~~~y~~~~~~~~~~~~~~~E~e~~-~v~~~~-~~~~~~---l~lq~eEV~~~~wvs~~el~~~~~~~~~~~~tpw~~~ 218 (247)
T PLN02552 144 LTRLHYKAADDVTHGPDGKWGEHELD-YLLFIR-PVRDVK---VNPNPDEVADVKYVNREELKEMMRKESGLKLSPWFRL 218 (247)
T ss_pred eeEEEEecccccccccCCCccceEEE-EEEEEE-ecCCCc---ccCCHHHhheEEEEeHHHHHHHHhhcCCcccCHHHHH
Confidence 3444444332 1222 222111 122211 1334467788999999999875 28888888
Q ss_pred HHhcc
Q 011579 467 VMMGK 471 (482)
Q Consensus 467 il~~L 471 (482)
+++.+
T Consensus 219 ~~~~~ 223 (247)
T PLN02552 219 IVDNF 223 (247)
T ss_pred HHHHH
Confidence 88665
No 102
>PLN02791 Nudix hydrolase homolog
Probab=98.07 E-value=1.6e-05 Score=89.36 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=68.3
Q ss_pred CCeEEEEecCC-CCCCCccccc-CccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEc--Cc--e-
Q 011579 344 DGVFILVKRRD-EGLLAGLWEF-PSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF--SH--I- 416 (482)
Q Consensus 344 ~gkvLl~KRp~-~gllaGLWEF-Pggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~f--th--~- 416 (482)
+|++|++||.. +..+.|+|++ |||-++.||+. .++..||++||+|+.+... ....++.+.+.+ .+ +
T Consensus 44 ~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~---~eAA~REL~EELGI~l~~~----~l~~l~~~~~~~~~~~g~~~ 116 (770)
T PLN02791 44 TQELLLQRRADCKDSWPGQWDISSAGHISAGDTS---LLSAQRELEEELGIILPKD----AFELLFVFLQECVINDGKFI 116 (770)
T ss_pred CCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCH---HHHHHHHHHHHhCCCCChh----heeeeeeEEEEeeccCCCcc
Confidence 68999999976 5679999999 79999999877 7899999999999985311 112333322211 11 1
Q ss_pred -EEEEEEEEEEEEEeCCcc-cccccccCCCCeeeeeccCCcc
Q 011579 417 -RLKVHVELLVLCIKGGID-KWVEKQDKGTLSWKCVDGGTLA 456 (482)
Q Consensus 417 -~l~L~~~~~~~~~~~~~~-~~~~~~~~e~~~~~Wv~~~eL~ 456 (482)
+--.++|.+. ..+..+ ..+.++..|..+++|++.+++.
T Consensus 117 e~E~~~VYlv~--~~~~~p~~~~~lq~eEV~~v~wvsl~El~ 156 (770)
T PLN02791 117 NNEYNDVYLVT--TLDPIPLEAFTLQESEVSAVKYMSIEEYK 156 (770)
T ss_pred eeeEEEEEEEE--ECCCCCcccCCCChhhhheeEEEcHHHHH
Confidence 1123456553 222111 1224556788999999998885
No 103
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=98.06 E-value=1.5e-05 Score=76.51 Aligned_cols=105 Identities=7% Similarity=-0.038 Sum_probs=62.4
Q ss_pred CCeEEEEecCCCCC-----CCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEE
Q 011579 344 DGVFILVKRRDEGL-----LAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRL 418 (482)
Q Consensus 344 ~gkvLl~KRp~~gl-----laGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l 418 (482)
++++++.+--.-+. -+-+||||.|.+++||++ ++|..|||.||.|..+. ....++.+........-
T Consensus 61 ~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p---~~aA~REL~EETGy~a~------~~~~l~~~~~spg~~~e 131 (202)
T PRK10729 61 RDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESV---EDVARREAIEEAGLIVG------RTKPVLSYLASPGGTSE 131 (202)
T ss_pred CCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCH---HHHHHHHHHHHhCceee------EEEEEEEEEcCCCcCce
Confidence 45665544222232 236899999999999888 89999999999999875 33455544444333445
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCccc
Q 011579 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS 457 (482)
Q Consensus 419 ~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~ 457 (482)
.+|+|+..................|..+..|++.+++..
T Consensus 132 ~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~ 170 (202)
T PRK10729 132 RSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQ 170 (202)
T ss_pred EEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHH
Confidence 567777642111000000011224555678888777643
No 104
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=97.90 E-value=7.2e-05 Score=70.93 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=37.2
Q ss_pred CeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCC
Q 011579 345 GVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDP 394 (482)
Q Consensus 345 gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~ 394 (482)
=++|+.||+.. |.|.||||.++++|+. .+|+.||+.||.++.+
T Consensus 49 l~vLl~~r~~~----g~walPGG~v~~~E~~---~~aa~Rel~EEt~l~l 91 (186)
T cd03670 49 LQFVAIKRPDS----GEWAIPGGMVDPGEKI---SATLKREFGEEALNSL 91 (186)
T ss_pred eEEEEEEeCCC----CcCcCCeeeccCCCCH---HHHHHHHHHHHHcccc
Confidence 38899999863 7899999999999877 8999999999997653
No 105
>PF10576 EndIII_4Fe-2S: Iron-sulfur binding domain of endonuclease III; InterPro: IPR003651 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs. The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The iron-sulphur cluster loop (FCL) is also found in DNA-(apurinic or apyrimidinic site) lyase, a subfamily of endonuclease III. The enzyme has both apurinic and apyrimidinic endonuclease activity and a DNA N-glycosylase activity. It cuts damaged DNA at cytosines, thymines and guanines, and acts on the damaged strand 5' of the damaged site. The enzyme binds a 4Fe-4S cluster which is not important for the catalytic activity, but is probably involved in the alignment of the enzyme along the DNA strand.; GO: 0004519 endonuclease activity, 0051539 4 iron, 4 sulfur cluster binding; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A 2ABK_A 1KG7_A 1KG2_A 1MUN_A ....
Probab=97.60 E-value=1.7e-05 Score=45.75 Aligned_cols=17 Identities=47% Similarity=1.351 Sum_probs=11.6
Q ss_pred ccCCCCCCCCCCCcccC
Q 011579 277 CTPLNPNCTSCPVSDKC 293 (482)
Q Consensus 277 C~~~~P~C~~Cpl~~~C 293 (482)
|++++|+|+.|||+++|
T Consensus 1 Ctar~P~C~~Cpl~~~C 17 (17)
T PF10576_consen 1 CTARKPKCEECPLADYC 17 (17)
T ss_dssp S-SSS--GGG-TTGGG-
T ss_pred CcCCCCccccCCCcccC
Confidence 89999999999999988
No 106
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=97.38 E-value=0.0004 Score=67.17 Aligned_cols=106 Identities=19% Similarity=0.058 Sum_probs=68.8
Q ss_pred CCCeEEEEecCCC-CCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 343 PDGVFILVKRRDE-GLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 343 ~~gkvLl~KRp~~-gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
.+-++|++||... ..+.|-=.||||+.+.+. .+..++..||-.||.|++.+ ..+.++...-.+....+.++
T Consensus 56 ~~l~vLltkRSr~LrshsGev~fPGG~~d~~D--~s~~~tAlREt~EEIGl~~~------~~~~~g~l~~~~~r~~~~v~ 127 (246)
T KOG3069|consen 56 GELSVLLTKRSRTLRSHSGEVCFPGGRRDPHD--KSDIQTALRETEEEIGLDPE------LVDVLGALPPFVLRSGWSVF 127 (246)
T ss_pred CceEEEEEeccccccccCCceeCCCCcCCccc--cchHHHHHHHHHHHhCCCHH------HhhhhhhccceeeccCcccc
Confidence 3468999999865 679999999999998764 22356777999999999986 34555555544544556666
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCccc
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS 457 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~ 457 (482)
+..+-+.-.. +.........|.....||+.+++-.
T Consensus 128 p~v~~l~~~~-~l~~~~ln~gEv~~~F~VPL~~ll~ 162 (246)
T KOG3069|consen 128 PVVGFLSDKK-ILPSLRLNSGEVESAFWVPLTDLLL 162 (246)
T ss_pred eeEEEEeccc-ccccccCCchheeeeeeeeHHHHhh
Confidence 6665432221 1011122335666778888776643
No 107
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=97.26 E-value=0.0013 Score=62.76 Aligned_cols=101 Identities=7% Similarity=-0.110 Sum_probs=56.8
Q ss_pred CCeEEEEecCCCCC------CCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEE--EcCc
Q 011579 344 DGVFILVKRRDEGL------LAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVH--IFSH 415 (482)
Q Consensus 344 ~gkvLl~KRp~~gl------laGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H--~fth 415 (482)
++++++.+--..+. -+=.||||.|.++++ ++ +++..|||.||.|..+. ..+.++.+.= .|+.
T Consensus 57 ~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p---~~aA~REL~EETGy~a~------~~~~l~~~~~spG~s~ 126 (191)
T PRK15009 57 KKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EP---EVCIRKEAIEETGYEVG------EVRKLFELYMSPGGVT 126 (191)
T ss_pred CCEEEEEEcccccccccCCCCceEEEEeccccCCC-CH---HHHHHHHHHHhhCCccc------eEEEeeEEEcCCcccC
Confidence 56777665433344 345699999999965 45 78999999999998875 2334433211 1222
Q ss_pred eEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCccc
Q 011579 416 IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS 457 (482)
Q Consensus 416 ~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~ 457 (482)
=.+|+|.+...-.... ........|..+..|++.+++..
T Consensus 127 --e~~~lf~a~~~~~~~~-~~~~~de~E~iev~~~~~~e~~~ 165 (191)
T PRK15009 127 --ELIHFFIAEYSDSQRA-NAGGGVEDEDIEVLELPFSQALE 165 (191)
T ss_pred --cEEEEEEEEECchhcc-cCCCCCCCceEEEEEEcHHHHHH
Confidence 2346666642100000 00001123455678888777644
No 108
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=96.91 E-value=0.00063 Score=67.87 Aligned_cols=99 Identities=10% Similarity=0.114 Sum_probs=72.9
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEEEE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVE 423 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~~~ 423 (482)
++++||.+|+.. ..|+|.-=-|-||.||+. |+|+.||+.||.|+.+.+ .++++...+-|+|--+ --+
T Consensus 154 ~~~ilLa~~~~h--~~g~yS~LAGFVE~GETl---E~AV~REv~EE~Gi~V~~------vrY~~SQPWPfP~SLM--igf 220 (279)
T COG2816 154 GDEILLARHPRH--FPGMYSLLAGFVEPGETL---EQAVAREVFEEVGIKVKN------VRYVGSQPWPFPHSLM--LGF 220 (279)
T ss_pred CCceeecCCCCC--CCcceeeeeecccCCccH---HHHHHHHHHHhhCeEEee------eeEEeccCCCCchhhh--hhh
Confidence 456999999865 399999989999999776 999999999999999973 4567777777988654 222
Q ss_pred EEEEEEeCCcccccccccCCCCeeeeeccCC-cccCCC
Q 011579 424 LLVLCIKGGIDKWVEKQDKGTLSWKCVDGGT-LASMGL 460 (482)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~e-L~~~~f 460 (482)
.. ...++.. .+...|-.+.+|++.+| |..++-
T Consensus 221 ~a--ey~sgeI---~~d~~Eleda~WFs~~evl~~L~~ 253 (279)
T COG2816 221 MA--EYDSGEI---TPDEGELEDARWFSRDEVLPALPP 253 (279)
T ss_pred ee--eeccccc---cCCcchhhhccccCHhHHhhhcCC
Confidence 22 2333322 22335677889999999 777775
No 109
>smart00525 FES FES domain. iron-sulpphur binding domain in DNA-(apurinic or apyrimidinic site) lyase (subfamily of ENDO3)
Probab=96.87 E-value=0.0004 Score=44.49 Aligned_cols=22 Identities=50% Similarity=1.244 Sum_probs=20.1
Q ss_pred hccCCCCCCCCCCCcccChhhh
Q 011579 276 ICTPLNPNCTSCPVSDKCQAYS 297 (482)
Q Consensus 276 iC~~~~P~C~~Cpl~~~C~~~~ 297 (482)
+|++++|+|+.||++..|.+|.
T Consensus 1 vC~ar~P~C~~Cpl~~~C~~~~ 22 (26)
T smart00525 1 ICTARKPRCDECPLKDLCPAYX 22 (26)
T ss_pred CccCCCCCCCCCcCHHHhhhhh
Confidence 6999999999999999999754
No 110
>PLN03143 nudix hydrolase; Provisional
Probab=96.86 E-value=0.0018 Score=65.61 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=36.4
Q ss_pred eEEEEecCCCCCCCcccccCccccCCC-CChhhHHHHHHHHHHhhcCCCCC
Q 011579 346 VFILVKRRDEGLLAGLWEFPSIILDGE-TDITTRREAAECFLKKSFNLDPR 395 (482)
Q Consensus 346 kvLl~KRp~~gllaGLWEFPggkve~~-e~~~~~~~AL~rel~Eelgi~~~ 395 (482)
+++++++..-+.-.-.||||+|.+|++ +++ .++..||++||.|+.+.
T Consensus 144 ~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp---~~aA~REL~EETG~~~~ 191 (291)
T PLN03143 144 YAVLTEQVRVPVGKFVLELPAGMLDDDKGDF---VGTAVREVEEETGIKLK 191 (291)
T ss_pred EEEEEEeEecCCCcEEEEecccccCCCCCCH---HHHHHHHHHHHHCCccc
Confidence 477777665444455899999999964 566 78899999999999863
No 111
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=96.15 E-value=0.0093 Score=55.42 Aligned_cols=107 Identities=14% Similarity=0.259 Sum_probs=67.0
Q ss_pred cCCCeEEEEecCC-CCCCCcccc-----cCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCc
Q 011579 342 QPDGVFILVKRRD-EGLLAGLWE-----FPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH 415 (482)
Q Consensus 342 ~~~gkvLl~KRp~-~gllaGLWE-----FPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth 415 (482)
+.+|++||+||.. +..|.|+|- -|. ++|+ ...|.+|-+..||||++.. -...+.+++
T Consensus 42 ne~g~LLltrRA~~K~twP~vWTNSvCsHP~----~~es---~~~A~~rRl~~ELGie~~~----------~d~~~il~r 104 (185)
T COG1443 42 NERGQLLLTRRALSKKTWPGVWTNSVCSHPL----PGES---NEDAARRRLAYELGIEPDQ----------YDKLEILPR 104 (185)
T ss_pred CCCCceeeehhhhhcccCcccccccccCCCc----CCCc---hHHHHHHHHHHHhCCCCcc----------cCccccccc
Confidence 6789999999985 578999996 233 3333 3788889999999999851 122344555
Q ss_pred eEEE-----------EE-EEEEEEEEeCCcccccccccCCCCeeeeeccCCccc------CCCChHhHHHHhcc
Q 011579 416 IRLK-----------VH-VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS------MGLTSGVRKVMMGK 471 (482)
Q Consensus 416 ~~l~-----------L~-~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~------~~fp~a~~kil~~L 471 (482)
|+.. +. ++.+ +... .+.+.+.|.++++|++.+++.. +.|++=.+-+.+..
T Consensus 105 f~YrA~~~~~~~E~Eic~V~~~--~~~~----~~~~npdEV~~~~wv~~e~l~~~~~~~~~~fsPW~~~~~~~~ 172 (185)
T COG1443 105 FRYRAADPDGIVENEICPVLAA--RLDS----ALDPNPDEVMDYRWVSPEDLKEMVDATPWAFSPWFVIQAEND 172 (185)
T ss_pred eEEeccCCCCcceeeeeeEEEE--eecC----CCCCChHHhhheeccCHHHHHHhhcCCceeeChHHHHHhcch
Confidence 5432 21 2222 2222 1234446888999999988865 33555555554443
No 112
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=96.11 E-value=0.0091 Score=60.24 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=43.5
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCC
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRN 396 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~ 396 (482)
+++|+..+-.| ..+.=.|||.-+-|-+|+||+. ++|..||.+||.|++++.
T Consensus 196 ~~d~~~~LL~R-~~r~~~gl~t~lAGFlEpGES~---eeav~REtwEEtGi~V~~ 246 (345)
T KOG3084|consen 196 DHDGKHALLGR-QKRYPPGLWTCLAGFLEPGESI---EEAVRRETWEETGIEVEV 246 (345)
T ss_pred cCCCCEeeeec-ccCCCCchhhhhhccCCccccH---HHHHHHHHHHHhCceeee
Confidence 56776666666 5678889999999999999877 999999999999999874
No 113
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=95.50 E-value=0.056 Score=51.23 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=47.1
Q ss_pred eEEEEe--cCCCCCCCcc-cccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEEE
Q 011579 346 VFILVK--RRDEGLLAGL-WEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHV 422 (482)
Q Consensus 346 kvLl~K--Rp~~gllaGL-WEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~~ 422 (482)
.+++.| ||+- +|+ -|||-|-++.+|+. +.|..|||+||.|..-.. ....+.....--||+..++|.+
T Consensus 89 ~ivL~kQfRpP~---Gk~ciElPAGLiD~ge~~---~~aAiREl~EEtGy~gkv----~~~s~~~f~DPGltn~~~~iv~ 158 (225)
T KOG3041|consen 89 YIVLVKQFRPPT---GKICIELPAGLIDDGEDF---EGAAIRELEEETGYKGKV----DMVSPTVFLDPGLTNCNLCIVV 158 (225)
T ss_pred EEEEEEeecCCC---CcEEEEcccccccCCCch---HHHHHHHHHHHhCcccee----eeccccEEcCCCCCCCceEEEE
Confidence 455544 5543 444 89999999999887 889999999999986321 0111211122358888888876
Q ss_pred EEEE
Q 011579 423 ELLV 426 (482)
Q Consensus 423 ~~~~ 426 (482)
+.+.
T Consensus 159 v~id 162 (225)
T KOG3041|consen 159 VDID 162 (225)
T ss_pred EEec
Confidence 6554
No 114
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=95.30 E-value=0.042 Score=49.65 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=36.9
Q ss_pred eEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCC
Q 011579 346 VFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPR 395 (482)
Q Consensus 346 kvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~ 395 (482)
+||+.+-+.++ -.|-||.|-+|++|+. .+|..||..||-|+.-.
T Consensus 25 eVLlvsSs~~~---~~wi~PKGGwE~dE~~---~eAA~REt~EEAGv~G~ 68 (145)
T KOG2839|consen 25 EVLLVSSSKKP---HRWIVPKGGWEPDESV---EEAALRETWEEAGVKGK 68 (145)
T ss_pred EEEEEecCCCC---CCccCCCCCCCCCCCH---HHHHHHHHHHHhCceee
Confidence 89999876643 4599999999999877 78889999999998765
No 115
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1.
Probab=94.62 E-value=0.027 Score=35.95 Aligned_cols=21 Identities=48% Similarity=0.610 Sum_probs=18.1
Q ss_pred hhhhcCCCCcHHHHHHHHHhh
Q 011579 194 SDLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 194 ~~L~~lpGIG~~TA~~il~fa 214 (482)
+.|.++||||+++|+.++.+.
T Consensus 1 ~~L~~i~GiG~k~A~~il~~~ 21 (26)
T smart00278 1 EELLKVPGIGPKTAEKILEAX 21 (26)
T ss_pred ChhhhCCCCCHHHHHHHHHhc
Confidence 368899999999999999754
No 116
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A ....
Probab=93.96 E-value=0.17 Score=39.99 Aligned_cols=55 Identities=31% Similarity=0.349 Sum_probs=38.2
Q ss_pred HHHHHHhcc-CcHHHHHHHHHHHHHHHHcCCCCCCchhh-hhcCCCCcHHHHHHHHHh
Q 011579 158 EVNEMWAGL-GYYRRARFLLEGAKMIVAEGDGFPNTVSD-LRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 158 el~~~i~~l-G~~~RA~~L~~~a~~i~~~~g~~p~~~~~-L~~lpGIG~~TA~~il~f 213 (482)
++.+...-. |-..|++...+++..|......+- +.++ +.+|||||+.+|..|--|
T Consensus 10 ~la~~~~~~~~~~~r~~aY~~Aa~~i~~l~~~i~-~~~~~~~~l~gIG~~ia~kI~E~ 66 (68)
T PF14716_consen 10 ELADLYELQGGDPFRARAYRRAAAAIKALPYPIT-SGEEDLKKLPGIGKSIAKKIDEI 66 (68)
T ss_dssp HHHHHHHHTSTSHHHHHHHHHHHHHHHHSSS-HH-SHHHHHCTSTTTTHHHHHHHHHH
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHhCCHhHh-hHHHHHhhCCCCCHHHHHHHHHH
Confidence 444444445 444499999999998887433332 3355 999999999999988644
No 117
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=93.64 E-value=0.036 Score=55.83 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=65.8
Q ss_pred cCCCeEEEEecCC-CCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCce----
Q 011579 342 QPDGVFILVKRRD-EGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHI---- 416 (482)
Q Consensus 342 ~~~gkvLl~KRp~-~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~---- 416 (482)
+.+++||++|-.+ --...|.|-||+|.|+++|+. -+.+.||++||.|++.+ | ..+-.+.|.-+..
T Consensus 124 n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i---~~gavrEvkeetgid~e----f---~eVla~r~~H~~~~~~~ 193 (295)
T KOG0648|consen 124 NKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDI---WHGAVREVKEETGIDTE----F---VEVLAFRRAHNATFGLI 193 (295)
T ss_pred cCCceeEEEEecccceeecccccccceEecccccc---hhhhhhhhHHHhCcchh----h---hhHHHHHhhhcchhhcc
Confidence 5557999987422 234689999999999998876 78899999999998764 1 1122222222211
Q ss_pred EEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCC--ChHhHHHH
Q 011579 417 RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGL--TSGVRKVM 468 (482)
Q Consensus 417 ~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~f--p~a~~kil 468 (482)
+-++ ++.|.++..+-. ..++..+-.+..|++.++.-+-++ +..+-+..
T Consensus 194 ksd~-f~~c~L~p~s~~---i~~~~~ei~~~~Wmp~~e~v~qp~~~~~~m~~~~ 243 (295)
T KOG0648|consen 194 KSDM-FFTCELRPRSLD---ITKCKREIEAAAWMPIEEYVSQPLVHPKGMFRLA 243 (295)
T ss_pred cccc-eeEEEeeccccc---cchhHHHHHHHhcccHHHhhcccccccchhhHHH
Confidence 2222 234444322211 112223344568998887777665 34434433
No 118
>PLN02839 nudix hydrolase
Probab=92.42 E-value=0.55 Score=48.99 Aligned_cols=104 Identities=13% Similarity=0.002 Sum_probs=65.6
Q ss_pred CCCeEEEEecCCC-CCCCcccc-cCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCce---E
Q 011579 343 PDGVFILVKRRDE-GLLAGLWE-FPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHI---R 417 (482)
Q Consensus 343 ~~gkvLl~KRp~~-gllaGLWE-FPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~---~ 417 (482)
++++++|.||... ..+.|+|. .-+|-+..|+++ .+++.||..||.|+..... .-..+.+.+.|.+-.- .
T Consensus 216 g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp---~etliREa~EEAgLp~~l~---~~~~~~G~VsY~~~~~~g~~ 289 (372)
T PLN02839 216 GQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISC---GENLVKECEEEAGISKAIA---DRAIAVGAVSYMDIDQYCFK 289 (372)
T ss_pred CCeEEEeeccCCCCCCCCChhhhccccCccCCCCH---HHHHHHHHHHHcCCCHHHH---hcceEeEEEEEEEEcCCccc
Confidence 4468999999975 56888886 334556667776 8999999999999975310 0134567777664221 1
Q ss_pred E-EEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcc
Q 011579 418 L-KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLA 456 (482)
Q Consensus 418 l-~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~ 456 (482)
. .+++ +.+.+..+.. ..+++.|..++.+++.+|+.
T Consensus 290 ~evly~--YDLeLP~df~--P~~qDGEVe~F~Lm~v~EV~ 325 (372)
T PLN02839 290 RDVLFC--YDLELPQDFV--PKNQDGEVESFKLIPVAQVA 325 (372)
T ss_pred cCEEEE--eeeecCCccc--cCCCccceeEEEEecHHHHH
Confidence 1 1233 3334443321 13566777889998887764
No 119
>PF09674 DUF2400: Protein of unknown function (DUF2400); InterPro: IPR014127 Members of this uncharacterised protein family are found sporadically, so far only among spirochetes, epsilon and delta proteobacteria, and Bacteroides. The function is unknown and its gene neighbourhoods show little conservation.
Probab=92.27 E-value=0.11 Score=50.96 Aligned_cols=55 Identities=20% Similarity=0.341 Sum_probs=42.4
Q ss_pred eeeecCchhhhHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhh
Q 011579 219 VPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGA 274 (482)
Q Consensus 219 ~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~ 274 (482)
.+|+||||.|+..+||.+.....+-.+..++-+.+++ +.+++|-.+-.||-.+|.
T Consensus 176 iiPLDtHv~~var~LGL~~rk~~d~k~A~elT~~lr~-~~p~DPvKYDFAL~~~Gi 230 (232)
T PF09674_consen 176 IIPLDTHVFRVARKLGLLKRKSADWKAARELTEALRE-FDPDDPVKYDFALFRLGI 230 (232)
T ss_pred cccchHhHHHHHHHcCCccCCCccHHHHHHHHHHHHh-cCCCCCcchhhhcccCCc
Confidence 5789999999999999987544444566666665655 567789888888888875
No 120
>TIGR02757 conserved hypothetical protein TIGR02757. Members of this uncharacterized protein family are found sporadically, so far only among spirochetes, epsilon and delta proteobacteria, and Bacteroides. The function is unknown and its gene neighborhoods show little conservation.
Probab=92.08 E-value=0.12 Score=50.59 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=41.4
Q ss_pred eeeecCchhhhHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhh
Q 011579 219 VPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGA 274 (482)
Q Consensus 219 ~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~ 274 (482)
.+|+||||.||..+||.+..+..+-.+..++-+.+.+ +++++|-.+-.||-.+|.
T Consensus 173 iiPLDtH~~rvar~LgL~~Rk~~d~kaa~ElT~~Lr~-~dp~DPvKYDFAL~~lGi 227 (229)
T TIGR02757 173 ILPLDTHVFRIAKKLKLLKRKSYDLKAAIEITEALRE-LNPEDPIKYDFALFRLGQ 227 (229)
T ss_pred eeechHhHHHHHHHhCCcccCchhHHHHHHHHHHHHh-cCCCCCcchhhhcccCCc
Confidence 5889999999999999887543333455555554544 577889999999888885
No 121
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=91.64 E-value=0.17 Score=39.47 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=18.5
Q ss_pred CCchhhhhcCCCCcHHHHHHHHHhh
Q 011579 190 PNTVSDLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 190 p~~~~~L~~lpGIG~~TA~~il~fa 214 (482)
-.+.++|.++||||+.+|+.|..|-
T Consensus 31 ~a~~e~L~~i~gIG~~~A~si~~ff 55 (64)
T PF12826_consen 31 NASVEELSAIPGIGPKIAQSIYEFF 55 (64)
T ss_dssp C--HHHHCTSTT--HHHHHHHHHHH
T ss_pred HcCHHHHhccCCcCHHHHHHHHHHH
Confidence 3578999999999999999998763
No 122
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model.
Probab=90.41 E-value=0.62 Score=36.62 Aligned_cols=58 Identities=31% Similarity=0.489 Sum_probs=39.0
Q ss_pred HHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHh
Q 011579 150 HLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 150 ~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~f 213 (482)
.|-.|+.++|..++.++|.. +|+.|++--. ..|.+ .+.++|.+++|||.++|+-|..+
T Consensus 9 nvNta~~~~L~~~ipgig~~-~a~~Il~~R~----~~g~~-~s~~dL~~v~gi~~~~~~~i~~~ 66 (69)
T TIGR00426 9 NINTATAEELQRAMNGVGLK-KAEAIVSYRE----EYGPF-KTVEDLKQVPGIGNSLVEKNLAV 66 (69)
T ss_pred ECcCCCHHHHHhHCCCCCHH-HHHHHHHHHH----HcCCc-CCHHHHHcCCCCCHHHHHHHHhh
Confidence 45567888887766777763 3433333211 13333 48899999999999999998765
No 123
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=89.70 E-value=0.39 Score=46.36 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=31.1
Q ss_pred eEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhc
Q 011579 346 VFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSF 390 (482)
Q Consensus 346 kvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eel 390 (482)
+|+..||++.| .|-.|||.+++||.. .+.|+||+.||.
T Consensus 140 e~vavkr~d~~----~WAiPGGmvdpGE~v---s~tLkRef~eEa 177 (275)
T KOG4195|consen 140 EFVAVKRPDNG----EWAIPGGMVDPGEKV---SATLKREFGEEA 177 (275)
T ss_pred EEEEEecCCCC----cccCCCCcCCchhhh---hHHHHHHHHHHH
Confidence 67889999765 578899999999765 688999987664
No 124
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=89.07 E-value=0.99 Score=34.48 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=15.4
Q ss_pred chhhhhcCCCCcHHHHHHHHHh
Q 011579 192 TVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 192 ~~~~L~~lpGIG~~TA~~il~f 213 (482)
+.++|.++||||+++|+.+...
T Consensus 36 ~~~~L~~i~Gig~~~a~~i~~~ 57 (60)
T PF14520_consen 36 DPEELAEIPGIGEKTAEKIIEA 57 (60)
T ss_dssp HHHHHHTSTTSSHHHHHHHHHH
T ss_pred CHHHHhcCCCCCHHHHHHHHHH
Confidence 4456777888888888776543
No 125
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=88.76 E-value=1.3 Score=39.38 Aligned_cols=46 Identities=22% Similarity=0.253 Sum_probs=36.4
Q ss_pred eEEEEecCCCCCCC----cccccCccccCCCCChhhHHHHHHHHHHhhcCCCCC
Q 011579 346 VFILVKRRDEGLLA----GLWEFPSIILDGETDITTRREAAECFLKKSFNLDPR 395 (482)
Q Consensus 346 kvLl~KRp~~glla----GLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~ 395 (482)
.+|+.. |-+-+|+ |-|..|-|...++|++ ..|..||..||+||.+.
T Consensus 19 ~VLLvH-PGGPFWa~kD~GAWSIPKGey~~gEdp---~~AArREf~EE~Gi~vd 68 (161)
T COG4119 19 DVLLVH-PGGPFWAGKDDGAWSIPKGEYTGGEDP---WLAARREFSEEIGICVD 68 (161)
T ss_pred EEEEec-CCCCccccCCCCcccccccccCCCcCH---HHHHHHHhhhhhceeec
Confidence 445544 4455665 5699999999999988 78899999999999885
No 126
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=88.55 E-value=0.99 Score=44.50 Aligned_cols=104 Identities=18% Similarity=0.170 Sum_probs=60.5
Q ss_pred CCeEEEEecCCCCCCCcccccCcccc-CCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE-
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIIL-DGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH- 421 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkv-e~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~- 421 (482)
..=|||++|+=|. .+.|-||.+.. +.+++ .+....+.|..-.|-... -+++...+++...|.++.-.....
T Consensus 138 r~LyLLV~~k~g~--~s~w~fP~~~~s~~~~~---lr~~ae~~Lk~~~ge~~~--t~fvgnaP~g~~~~q~pr~~~~e~~ 210 (263)
T KOG4548|consen 138 RKLYLLVKRKFGK--SSVWIFPNRQFSSSEKT---LRGHAERDLKVLSGENKS--TWFVGNAPFGHTPLQSPREMTTEEP 210 (263)
T ss_pred ceEEEEEeeccCc--cceeeCCCcccCCccch---HHHHHHHHHHHHhcchhh--hheeccCccccccccCccccccccc
Confidence 3467788866443 45899999998 55543 367777778755553332 134445788877777765433222
Q ss_pred ----EEEEEEE-EeCCcccccccccCCCCeeeeeccCCcccCC
Q 011579 422 ----VELLVLC-IKGGIDKWVEKQDKGTLSWKCVDGGTLASMG 459 (482)
Q Consensus 422 ----~~~~~~~-~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~ 459 (482)
++.+... +.+..+ +.+..+ +|.||+.++|.++-
T Consensus 211 ~~sk~ff~k~~lv~~~~~---kn~n~e--dfvWvTkdel~e~l 248 (263)
T KOG4548|consen 211 VSSKVFFFKASLVANSNQ---KNQNKE--DFVWVTKDELGEKL 248 (263)
T ss_pred ccceeEEeeeeeccccch---hccccc--ceEEechHHHhhhc
Confidence 2222211 222221 122233 49999999998864
No 127
>PF05559 DUF763: Protein of unknown function (DUF763); InterPro: IPR008482 This family consists of several uncharacterised bacterial and archaeal proteins of unknown function.
Probab=83.42 E-value=3.8 Score=41.96 Aligned_cols=61 Identities=18% Similarity=0.157 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHhh---cCCeeeeecCchhhhHHhhhcccC
Q 011579 173 RFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIA---FKEVVPVVDGNVIRVLARLKAISA 238 (482)
Q Consensus 173 ~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~fa---~~~p~~~vD~~v~Rvl~Rl~~~~~ 238 (482)
+.+.++...+.+ .-|++.++|+.++|||+.|..++.+.| ||.|.-.=|-- |....+|+-+.
T Consensus 251 ~~~~~~l~~~~e---~~p~~feeLL~~~GvGp~TlRALaLvaelIyg~p~s~~DPa--kfsfA~GGKDG 314 (319)
T PF05559_consen 251 RRLWKVLEKAYE---RQPSDFEELLLIKGVGPSTLRALALVAELIYGVPPSFRDPA--KFSFAHGGKDG 314 (319)
T ss_pred HHHHHHHHHHhh---CCccCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCccChh--HHHHhhcCCCC
Confidence 344444444444 348999999999999999999988775 67653222221 66666666544
No 128
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=83.24 E-value=6.7 Score=36.34 Aligned_cols=110 Identities=18% Similarity=0.219 Sum_probs=56.4
Q ss_pred CCCeEEEEecCCCC---CCCcccccCc-cccCCCCChhhHHH----HHHHHHHhhcCCCCCCCcccccccccccEEEEcC
Q 011579 343 PDGVFILVKRRDEG---LLAGLWEFPS-IILDGETDITTRRE----AAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS 414 (482)
Q Consensus 343 ~~gkvLl~KRp~~g---llaGLWEFPg-gkve~~e~~~~~~~----AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~ft 414 (482)
.++.+||..|..+| -+.|++..=- |-...++-...+++ -+.||++||+++.-+.-+ ..+.++-+.-.-+
T Consensus 70 ~edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q---~~e~lGlINdd~n 146 (203)
T COG4112 70 DEDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQ---ELEFLGLINDDTN 146 (203)
T ss_pred cCCEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhh---hheeeeeecCCCc
Confidence 45699999999876 4666766532 22222211111222 368999999998743111 1233443322111
Q ss_pred -ceEEEEEE-EEEEEEEeCCcccccccccCCCCeeeeeccCCccc-CCC
Q 011579 415 -HIRLKVHV-ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS-MGL 460 (482)
Q Consensus 415 -h~~l~L~~-~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~-~~f 460 (482)
--++++-+ |.. .+.. .-++...++.-+|+|+..++|.. |+-
T Consensus 147 eVgkVHiG~lf~~----~~k~-ndvevKEkd~~~~kwik~~ele~~y~~ 190 (203)
T COG4112 147 EVGKVHIGALFLG----RGKF-NDVEVKEKDLFEWKWIKLEELEKFYGV 190 (203)
T ss_pred ccceEEEEEEEEe----eccc-cceeeeecceeeeeeeeHHHHHHHhhh
Confidence 11233221 121 2211 11223335667899999999988 553
No 129
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.44 E-value=8 Score=36.61 Aligned_cols=71 Identities=13% Similarity=0.114 Sum_probs=62.5
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHhC--CCHHHHHhCCHHHHHHHHhccCcHH---HHHHHHHHHHHHHH
Q 011579 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKW--PTIHHLAKASLEEVNEMWAGLGYYR---RARFLLEGAKMIVA 184 (482)
Q Consensus 114 ~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~--pt~~~La~a~~eel~~~i~~lG~~~---RA~~L~~~a~~i~~ 184 (482)
+.-|+.|+-+++-.=.++.++..-...|.+.| .+++.+|..++++|+.++..-|.-+ |.+.+++-|+.+.+
T Consensus 28 ~~LFE~L~Le~fQAGLSW~tIL~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~ 103 (179)
T TIGR00624 28 VALFERMSLEGFQAGLSWITVLRKRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQ 103 (179)
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999888888887 5999999999999999999999976 46668888888876
No 130
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=81.95 E-value=7.9 Score=36.87 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=62.3
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHhC--CCHHHHHhCCHHHHHHHHhccCcHH---HHHHHHHHHHHHHH
Q 011579 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKW--PTIHHLAKASLEEVNEMWAGLGYYR---RARFLLEGAKMIVA 184 (482)
Q Consensus 114 ~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~--pt~~~La~a~~eel~~~i~~lG~~~---RA~~L~~~a~~i~~ 184 (482)
+.-||.|+=+.|-.=.++.++..-...|.+.| .+++.+|..++++|+.++..-|.-+ |.+.+++-|+.+.+
T Consensus 29 ~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~NA~~~l~ 104 (187)
T PRK10353 29 KKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQ 104 (187)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999888888887 4899999999999999999999965 56788888888775
No 131
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A.
Probab=81.11 E-value=1.3 Score=34.48 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=18.4
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhh
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa 214 (482)
.+.++|.++||||++.|..|+.+-
T Consensus 11 as~~eL~~lpgi~~~~A~~Iv~~R 34 (65)
T PF12836_consen 11 ASAEELQALPGIGPKQAKAIVEYR 34 (65)
T ss_dssp S-HHHHHTSTT--HHHHHHHHHHH
T ss_pred CCHHHHHHcCCCCHHHHHHHHHHH
Confidence 467899999999999999998764
No 132
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=80.77 E-value=5.3 Score=37.81 Aligned_cols=71 Identities=14% Similarity=0.264 Sum_probs=59.6
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHhCC--CHHHHHhCCHHHHHHHHhccCcH--H-HHHHHHHHHHHHHH
Q 011579 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWP--TIHHLAKASLEEVNEMWAGLGYY--R-RARFLLEGAKMIVA 184 (482)
Q Consensus 114 ~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~p--t~~~La~a~~eel~~~i~~lG~~--~-RA~~L~~~a~~i~~ 184 (482)
+.-|+.|+-+++-.=.++.++..-...|.+.|- +|+.+|..++++|++++..-|.- + |.+.++.-|+.+.+
T Consensus 24 ~~LFe~L~Le~fQaGLsW~~Il~Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi~NA~~~l~ 99 (179)
T PF03352_consen 24 RKLFEMLTLEGFQAGLSWSTILKKREAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVINNARAILK 99 (179)
T ss_dssp HHHHHHHHHHHHTTTS-HHHHHHTHHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHH
Confidence 347999999999999999999999999988885 89999999999999999988884 3 78889988888876
No 133
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=80.46 E-value=1.2 Score=42.23 Aligned_cols=27 Identities=37% Similarity=0.411 Sum_probs=21.9
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhhcCC
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIAFKE 217 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa~~~ 217 (482)
.+.+.|.++||||+|||+-|.+---++
T Consensus 105 ~D~~~L~~vpGIGkKtAeRIilELkdK 131 (183)
T PRK14601 105 GDESVLKKVPGIGPKSAKRIIAELSDA 131 (183)
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHHH
Confidence 467889999999999999887654443
No 134
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=80.17 E-value=1.4 Score=33.65 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=25.4
Q ss_pred hhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCch
Q 011579 193 VSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNV 226 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v 226 (482)
.++|.++||||+++|..+...+++-..-+.+...
T Consensus 4 ~~~L~~I~Gig~~~a~~L~~~G~~t~~~l~~a~~ 37 (60)
T PF14520_consen 4 FDDLLSIPGIGPKRAEKLYEAGIKTLEDLANADP 37 (60)
T ss_dssp HHHHHTSTTCHHHHHHHHHHTTCSSHHHHHTSHH
T ss_pred HHhhccCCCCCHHHHHHHHhcCCCcHHHHHcCCH
Confidence 4679999999999999999887775433333333
No 135
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria []. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=79.54 E-value=1.4 Score=37.16 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=23.7
Q ss_pred chhhhhcCCCCcHHHHHHHHHhhcCCee
Q 011579 192 TVSDLRKVPGIGNYTAGAIASIAFKEVV 219 (482)
Q Consensus 192 ~~~~L~~lpGIG~~TA~~il~fa~~~p~ 219 (482)
...+|..|||||+.||.-+...++..+.
T Consensus 10 ~~~~L~~iP~IG~a~a~DL~~LGi~s~~ 37 (93)
T PF11731_consen 10 GLSDLTDIPNIGKATAEDLRLLGIRSPA 37 (93)
T ss_pred HHHHHhcCCCccHHHHHHHHHcCCCCHH
Confidence 3578999999999999999988877653
No 136
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=79.18 E-value=1.4 Score=42.26 Aligned_cols=27 Identities=33% Similarity=0.358 Sum_probs=21.7
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhhcCC
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIAFKE 217 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa~~~ 217 (482)
.+.+.|.++||||+|||+-|.+---++
T Consensus 104 ~D~~~L~~vpGIGkKtAeRIIlELkdK 130 (196)
T PRK13901 104 EDIELISKVKGIGNKMAGKIFLKLRGK 130 (196)
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999887554443
No 137
>TIGR01259 comE comEA protein. This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation.
Probab=78.65 E-value=2.8 Score=36.93 Aligned_cols=61 Identities=30% Similarity=0.467 Sum_probs=41.9
Q ss_pred CCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHh
Q 011579 146 PTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 146 pt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~f 213 (482)
+.+-+|-.|+.++|.. +.++|- .+|+.|++--.. +|.+ .+.++|.+++|||+++++-+.-+
T Consensus 57 ~~~iniNtA~~~eL~~-lpGIG~-~~A~~Ii~~R~~----~g~f-~s~eeL~~V~GIg~k~~~~i~~~ 117 (120)
T TIGR01259 57 LAAVNINAASLEELQA-LPGIGP-AKAKAIIEYREE----NGAF-KSVDDLTKVSGIGEKSLEKLKDY 117 (120)
T ss_pred CCCEeCCcCCHHHHhc-CCCCCH-HHHHHHHHHHHh----cCCc-CCHHHHHcCCCCCHHHHHHHHhc
Confidence 3455677788888865 345554 266666554332 3443 67899999999999999987654
No 138
>COG1555 ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]
Probab=78.59 E-value=1.5 Score=40.14 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.5
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhh
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa 214 (482)
.+.++|..|||||++.|.+|..+-
T Consensus 94 As~eeL~~lpgIG~~kA~aIi~yR 117 (149)
T COG1555 94 ASAEELQALPGIGPKKAQAIIDYR 117 (149)
T ss_pred cCHHHHHHCCCCCHHHHHHHHHHH
Confidence 467899999999999999999875
No 139
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=78.57 E-value=1.5 Score=41.77 Aligned_cols=27 Identities=37% Similarity=0.416 Sum_probs=21.6
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhhcCC
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIAFKE 217 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa~~~ 217 (482)
.+.+.|.++||||+|||+-|.+---++
T Consensus 105 ~D~~~L~~vpGIGkKtAerIilELkdK 131 (188)
T PRK14606 105 QDVEGLSKLPGISKKTAERIVMELKDE 131 (188)
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 467889999999999999887544333
No 140
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.08 E-value=1.6 Score=41.79 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=22.2
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhhcCCe
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIAFKEV 218 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa~~~p 218 (482)
+..+.|.+|||||+|||.=+..+-+..+
T Consensus 8 ~Li~~l~~LPGIG~KsA~RlA~~ll~~~ 35 (195)
T TIGR00615 8 KLIESLKKLPGIGPKSAQRLAFHLLKRD 35 (195)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHcCC
Confidence 3457789999999999998877766543
No 141
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=77.99 E-value=1.5 Score=42.13 Aligned_cols=27 Identities=37% Similarity=0.447 Sum_probs=21.9
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhhcCC
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIAFKE 217 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa~~~ 217 (482)
++.+.|.++||||+|||+-+++---|+
T Consensus 105 ~d~~~L~k~PGIGkKtAerivleLk~K 131 (201)
T COG0632 105 EDVKALSKIPGIGKKTAERIVLELKGK 131 (201)
T ss_pred cChHhhhcCCCCCHHHHHHHHHHHhhh
Confidence 467889999999999999887654443
No 142
>PRK00076 recR recombination protein RecR; Reviewed
Probab=77.82 E-value=1.6 Score=41.82 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=22.4
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhhcCCe
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIAFKEV 218 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa~~~p 218 (482)
+..+.|.+|||||+|||.=+..+-+..+
T Consensus 8 ~Li~~l~~LPGIG~KsA~Rla~~ll~~~ 35 (196)
T PRK00076 8 KLIEALRKLPGIGPKSAQRLAFHLLQRD 35 (196)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHcCC
Confidence 3467789999999999998877766554
No 143
>PRK07945 hypothetical protein; Provisional
Probab=77.70 E-value=2.8 Score=43.42 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=39.9
Q ss_pred HHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCC-CCCc-hh-hhhcCCCCcHHHHHHHHHhh
Q 011579 157 EEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDG-FPNT-VS-DLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 157 eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~-~p~~-~~-~L~~lpGIG~~TA~~il~fa 214 (482)
+++..++.-.|=.. |++...++|+.|..-... +.+. .+ +|.+|||||.-||+.|.-+.
T Consensus 8 ~~~a~lle~~~~n~frv~ayr~aa~~~~~~~~~~~~~~~~~g~l~~~~giG~~~a~~i~e~~ 69 (335)
T PRK07945 8 RRIAFLLERARADTYRVRAFRRAADVVEALDAAERARRARAGSLTSLPGIGPKTAKVIAQAL 69 (335)
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHhcChhHHHHHHhcCCcccCCCcCHHHHHHHHHHH
Confidence 34555566666655 888999999887653222 2211 11 68999999999999987653
No 144
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=77.62 E-value=1.7 Score=41.93 Aligned_cols=26 Identities=35% Similarity=0.318 Sum_probs=21.2
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhhcC
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIAFK 216 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa~~ 216 (482)
.+.+.|.++||||+|||+-|..---+
T Consensus 106 ~D~~~L~~ipGIGkKtAerIilELkd 131 (203)
T PRK14602 106 EDVAALTRVSGIGKKTAQHIFLELKY 131 (203)
T ss_pred CCHHHHhcCCCcCHHHHHHHHHHHHH
Confidence 46789999999999999988754333
No 145
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=77.30 E-value=1.7 Score=41.68 Aligned_cols=26 Identities=23% Similarity=0.148 Sum_probs=21.1
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhhcC
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIAFK 216 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa~~ 216 (482)
.+.+.|.++||||+|||+-|..---+
T Consensus 104 ~D~~~L~kvpGIGkKtAerIilELkd 129 (197)
T PRK14603 104 GDARLLTSASGVGKKLAERIALELKG 129 (197)
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 46788999999999999988754333
No 146
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=76.87 E-value=1.8 Score=41.49 Aligned_cols=27 Identities=37% Similarity=0.445 Sum_probs=21.7
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhhcCC
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIAFKE 217 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa~~~ 217 (482)
.+.+.|.++||||+|||+-|..---++
T Consensus 105 ~D~~~L~kvpGIGkKtAerIilELk~K 131 (195)
T PRK14604 105 GDVARLARVPGIGKKTAERIVLELKGK 131 (195)
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHHH
Confidence 467889999999999999887554443
No 147
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=76.72 E-value=15 Score=34.83 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=58.5
Q ss_pred ChHHHHHHHHHhhhccHHHHHHHHHHHHHhC--CCHHHHHhCCHHHHHHHHhccCcHH---HHHHHHHHHHHHHH
Q 011579 115 RAYGVWVSEVMLQQTRVQTVIDYYNRWMTKW--PTIHHLAKASLEEVNEMWAGLGYYR---RARFLLEGAKMIVA 184 (482)
Q Consensus 115 dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~--pt~~~La~a~~eel~~~i~~lG~~~---RA~~L~~~a~~i~~ 184 (482)
.-|+.|.=++--.=.++.++..-.+.|.+.| .+|+.+|..++++++.++.-.|.-| |.+.++.-|+.+.+
T Consensus 31 ~LFE~l~Le~fQAGLSW~tVL~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~NA~~~l~ 105 (188)
T COG2818 31 RLFELLCLEGFQAGLSWLTVLKKREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATINNARAVLE 105 (188)
T ss_pred HHHHHHHHHHHhccchHHHHHHhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHH
Confidence 4688888777666678999999888888887 5999999999999999999999976 56677777777765
No 148
>PRK13844 recombination protein RecR; Provisional
Probab=76.69 E-value=1.8 Score=41.57 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=22.3
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhhcCCe
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIAFKEV 218 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa~~~p 218 (482)
+..+.|.+|||||+|||.=+..+-+..+
T Consensus 12 ~LI~~l~~LPGIG~KsA~Rla~~lL~~~ 39 (200)
T PRK13844 12 AVIESLRKLPTIGKKSSQRLALYLLDKS 39 (200)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHcCC
Confidence 3467789999999999998877766543
No 149
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=76.37 E-value=1.8 Score=41.26 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=21.6
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhhcCC
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIAFKE 217 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa~~~ 217 (482)
..++.|.+|||||+|+|.=+..+-+.+
T Consensus 9 ~LI~~l~kLPGvG~KsA~R~AfhLL~~ 35 (198)
T COG0353 9 KLIDALKKLPGVGPKSAQRLAFHLLQR 35 (198)
T ss_pred HHHHHHhhCCCCChhHHHHHHHHHHcc
Confidence 456788999999999998777666654
No 150
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.87 E-value=2.6 Score=40.39 Aligned_cols=119 Identities=17% Similarity=0.174 Sum_probs=66.6
Q ss_pred cCCCeEEEEecCCCC-CCCcccc-----cCccccCC--CCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEE-
Q 011579 342 QPDGVFILVKRRDEG-LLAGLWE-----FPSIILDG--ETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHI- 412 (482)
Q Consensus 342 ~~~gkvLl~KRp~~g-llaGLWE-----FPggkve~--~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~- 412 (482)
+.+|++||.||...+ .|.|+|- -|.+...+ +.+....+.|.+|-|.-||||..+... .-...+++.+.|.
T Consensus 61 ns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~-pee~~~ltrihYkA 139 (225)
T KOG0142|consen 61 NSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVP-PEEFNFLTRIHYKA 139 (225)
T ss_pred cCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccC-HHHcccceeeeeec
Confidence 678999999999765 4677773 45543321 223345577888889999999876211 0001233333332
Q ss_pred -----cCceEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCccc------CCCChHhHHHH
Q 011579 413 -----FSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS------MGLTSGVRKVM 468 (482)
Q Consensus 413 -----fth~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~------~~fp~a~~kil 468 (482)
+....+..-.+. .++.. ..|.+.|..+++||..+||.. ++|.|=-+-|.
T Consensus 140 ~sdg~wGEhEiDYiL~~-----~~~~~--~nPnpnEv~e~ryvs~eelkel~~~~~~~~TPWfkli~ 199 (225)
T KOG0142|consen 140 PSDGIWGEHEIDYILFL-----VKDVT--LNPNPNEVSEIRYVSREELKELVAKASAGFTPWFKLIS 199 (225)
T ss_pred CCCCCcccceeeEEEEE-----eccCC--CCCChhhhhHhheecHHHHHHHHhccccCCChHHHHHH
Confidence 222223322221 22221 123347888999999999854 55555444443
No 151
>TIGR00608 radc DNA repair protein radc. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.78 E-value=2.8 Score=40.84 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=44.4
Q ss_pred hCCHHHHHHHHhccCcHHHHH-HHHHHHHHHHHcC---CCC----CCchhhhhcCCCCcHHHHHHHH-HhhcCC
Q 011579 153 KASLEEVNEMWAGLGYYRRAR-FLLEGAKMIVAEG---DGF----PNTVSDLRKVPGIGNYTAGAIA-SIAFKE 217 (482)
Q Consensus 153 ~a~~eel~~~i~~lG~~~RA~-~L~~~a~~i~~~~---g~~----p~~~~~L~~lpGIG~~TA~~il-~fa~~~ 217 (482)
.++..||.+++=+.|. +-+ ....+|+.+.+.. |.+ ..+.++|++++|||+..|..++ .+.+++
T Consensus 13 ~Lsd~ELLailL~~g~--~~~~~~~~lA~~ll~~f~~~g~l~~l~~a~~~eL~~i~GiG~aka~~l~a~~El~r 84 (218)
T TIGR00608 13 ALSDYELLAIILRTGT--PKGLDVLSLSKRLLDVFGRQDSLGHLLSAPPEELSSVPGIGEAKAIQLKAAVELAK 84 (218)
T ss_pred cCCHHHHHHHHHhCCC--CCCCCHHHHHHHHHHHhcccCCHHHHHhCCHHHHHhCcCCcHHHHHHHHHHHHHHH
Confidence 3566788777755565 444 7788899888764 553 3578999999999997776664 444443
No 152
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=75.26 E-value=3.7 Score=36.75 Aligned_cols=57 Identities=16% Similarity=0.363 Sum_probs=34.6
Q ss_pred hCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHH
Q 011579 144 KWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIAS 212 (482)
Q Consensus 144 ~~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~ 212 (482)
.+...=+|-.|+.+++.. + =|.+. +|+.|+ . +|.+ .+.++|.++||||+++.+.+--
T Consensus 48 ~~~~kIdiN~A~~~el~~-l--pGigP~~A~~IV-------~-nGpf-~sveDL~~V~GIgekqk~~l~k 105 (132)
T PRK02515 48 EFGEKIDLNNSSVRAFRQ-F--PGMYPTLAGKIV-------K-NAPY-DSVEDVLNLPGLSERQKELLEA 105 (132)
T ss_pred hcCCcccCCccCHHHHHH-C--CCCCHHHHHHHH-------H-CCCC-CCHHHHHcCCCCCHHHHHHHHH
Confidence 344555666777777654 2 34444 666665 1 3433 4677888888888876665543
No 153
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=74.86 E-value=4.9 Score=38.27 Aligned_cols=24 Identities=46% Similarity=0.544 Sum_probs=19.9
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhh
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa 214 (482)
++.+.|.++||||+++|+.|+..-
T Consensus 105 ~d~~~L~~v~Gig~k~A~~I~~~l 128 (192)
T PRK00116 105 GDVKALTKVPGIGKKTAERIVLEL 128 (192)
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHH
Confidence 467889999999999999988543
No 154
>COG1796 POL4 DNA polymerase IV (family X) [DNA replication, recombination, and repair]
Probab=74.80 E-value=4.1 Score=41.73 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=42.7
Q ss_pred HHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhh--hhcCCCCcHHHHHHHHHhh
Q 011579 158 EVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSD--LRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 158 el~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~--L~~lpGIG~~TA~~il~fa 214 (482)
++...+.-.|=.. |++.-+.+|+.+-.-+-++|+..+. +..|||||+.||+.|.-|.
T Consensus 14 ~iA~~me~~Gen~fk~~aYr~Aa~sle~~~e~~~ei~e~~~~t~l~gIGk~ia~~I~e~l 73 (326)
T COG1796 14 RIADYMELEGENPFKIRAYRKAAQSLENLTEDLEEIEERGRLTELPGIGKGIAEKISEYL 73 (326)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHhhhhcccchHHHHhhcccCCCCCccHHHHHHHHHHH
Confidence 4445555566654 8888888888877655567766655 8999999999999997664
No 155
>TIGR01259 comE comEA protein. This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation.
Probab=74.73 E-value=2.4 Score=37.35 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.0
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhh
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa 214 (482)
.+.++|.+|||||+++|..|+.+-
T Consensus 65 A~~~eL~~lpGIG~~~A~~Ii~~R 88 (120)
T TIGR01259 65 ASLEELQALPGIGPAKAKAIIEYR 88 (120)
T ss_pred CCHHHHhcCCCCCHHHHHHHHHHH
Confidence 356899999999999999999774
No 156
>PRK00024 hypothetical protein; Reviewed
Probab=74.36 E-value=3.2 Score=40.59 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=41.0
Q ss_pred hCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCC----CCchhhhhcCCCCcHHHHHHHH
Q 011579 153 KASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGF----PNTVSDLRKVPGIGNYTAGAIA 211 (482)
Q Consensus 153 ~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~----p~~~~~L~~lpGIG~~TA~~il 211 (482)
.++..||.+++=+.|. +-+....+|+.+.+..|.+ -.+.++|.+++|||+..|..++
T Consensus 23 ~Lsd~ELLa~lL~~g~--~~~~~~~LA~~LL~~fgsL~~l~~as~~eL~~i~GIG~akA~~L~ 83 (224)
T PRK00024 23 ALSDAELLAILLRTGT--KGKSVLDLARELLQRFGSLRGLLDASLEELQSIKGIGPAKAAQLK 83 (224)
T ss_pred cCCHHHHHHHHHcCCC--CCCCHHHHHHHHHHHcCCHHHHHhCCHHHHhhccCccHHHHHHHH
Confidence 4566788777655555 4455667788888764443 3578999999999999886664
No 157
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A.
Probab=73.79 E-value=5.3 Score=31.04 Aligned_cols=52 Identities=33% Similarity=0.503 Sum_probs=31.5
Q ss_pred HHhCCHHHHHHHHhcc-CcHH-HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHH
Q 011579 151 LAKASLEEVNEMWAGL-GYYR-RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIA 211 (482)
Q Consensus 151 La~a~~eel~~~i~~l-G~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il 211 (482)
|-.|+.+||. .+ |+.. .|+.|++.-+. .|.| .+.++|..++|||+.+.+-+.
T Consensus 8 iN~as~~eL~----~lpgi~~~~A~~Iv~~R~~----~G~f-~s~~dL~~v~gi~~~~~~~l~ 61 (65)
T PF12836_consen 8 INTASAEELQ----ALPGIGPKQAKAIVEYREK----NGPF-KSLEDLKEVPGIGPKTYEKLK 61 (65)
T ss_dssp TTTS-HHHHH----TSTT--HHHHHHHHHHHHH----H-S--SSGGGGGGSTT--HHHHHHHC
T ss_pred CccCCHHHHH----HcCCCCHHHHHHHHHHHHh----CcCC-CCHHHHhhCCCCCHHHHHHHH
Confidence 3457777763 44 7766 78877765433 3433 478999999999999988664
No 158
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=73.64 E-value=2.3 Score=40.51 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=20.2
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhhcCC
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIAFKE 217 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa~~~ 217 (482)
.|.+.| ++||||+|||+-|.+---++
T Consensus 105 ~D~~~L-~vpGIGkKtAerIilELk~K 130 (186)
T PRK14600 105 EDKAAL-KVNGIGEKLINRIITELQYK 130 (186)
T ss_pred CCHhhe-ECCCCcHHHHHHHHHHHHHH
Confidence 356788 99999999999888544333
No 159
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=73.15 E-value=4.5 Score=38.57 Aligned_cols=41 Identities=27% Similarity=0.381 Sum_probs=25.5
Q ss_pred hhhhcCCCCcHHHHHHHHHhhcCCe-e--eeecCchhhhHHhhhcc
Q 011579 194 SDLRKVPGIGNYTAGAIASIAFKEV-V--PVVDGNVIRVLARLKAI 236 (482)
Q Consensus 194 ~~L~~lpGIG~~TA~~il~fa~~~p-~--~~vD~~v~Rvl~Rl~~~ 236 (482)
..|..+||||++||..++. .||.. . .+.+....++ .++-++
T Consensus 73 ~~L~~i~GIGpk~A~~il~-~fg~~~l~~~i~~~d~~~L-~~v~Gi 116 (192)
T PRK00116 73 RLLISVSGVGPKLALAILS-GLSPEELVQAIANGDVKAL-TKVPGI 116 (192)
T ss_pred HHHhcCCCCCHHHHHHHHH-hCCHHHHHHHHHhCCHHHH-HhCCCC
Confidence 4568899999999999875 34432 2 2445555554 444333
No 160
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=72.92 E-value=2.5 Score=40.40 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.1
Q ss_pred CchhhhhcCCCCcHHHHHHHHH
Q 011579 191 NTVSDLRKVPGIGNYTAGAIAS 212 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~ 212 (482)
++.+.|.++||||+|||+-|.+
T Consensus 105 ~D~~~L~~vpGIGkKtAerIil 126 (194)
T PRK14605 105 GNAELLSTIPGIGKKTASRIVL 126 (194)
T ss_pred CCHHHHHhCCCCCHHHHHHHHH
Confidence 4678899999999999999653
No 161
>smart00483 POLXc DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases
Probab=72.71 E-value=9.1 Score=39.70 Aligned_cols=54 Identities=22% Similarity=0.415 Sum_probs=36.9
Q ss_pred HHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHh
Q 011579 159 VNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 159 l~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~f 213 (482)
+.+++.-.|=.. |+++..++|..|..-...+ ++.++|.+|||||+.+|+-|--+
T Consensus 13 la~l~el~gen~~k~~ay~~Aa~~i~~l~~~i-~~~~~l~~lpgIG~~ia~kI~Ei 67 (334)
T smart00483 13 LAENYEVFGENKRKCSYFRKAASVLKSLPFPI-NSMKDLKGLPGIGDKIKKKIEEI 67 (334)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhCCCCC-CCHHHHhcCCCccHHHHHHHHHH
Confidence 333444455433 7788888888776543333 34568999999999999988754
No 162
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=71.66 E-value=2.9 Score=39.91 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=19.7
Q ss_pred CchhhhhcCCCCcHHHHHHHHHh
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~f 213 (482)
++...|.++||||+|||+-|++-
T Consensus 104 ~d~~~L~~ipGiGkKtAerIile 126 (191)
T TIGR00084 104 EEVKALVKIPGVGKKTAERLLLE 126 (191)
T ss_pred CCHHHHHhCCCCCHHHHHHHHHH
Confidence 36778999999999999999843
No 163
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=71.06 E-value=4.5 Score=38.70 Aligned_cols=43 Identities=26% Similarity=0.354 Sum_probs=28.3
Q ss_pred hhhhhcCCCCcHHHHHHHHHhhcCCee---eeecCchhhhHHhhhccc
Q 011579 193 VSDLRKVPGIGNYTAGAIASIAFKEVV---PVVDGNVIRVLARLKAIS 237 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~fa~~~p~---~~vD~~v~Rvl~Rl~~~~ 237 (482)
...|.+++||||++|-.||.. |+-.. .+...++.+ +.+.-++.
T Consensus 72 F~~Li~V~GIGpK~Al~ILs~-~~~~~l~~aI~~~D~~~-L~~vpGIG 117 (194)
T PRK14605 72 FETLIDVSGIGPKLGLAMLSA-MNAEALASAIISGNAEL-LSTIPGIG 117 (194)
T ss_pred HHHHhCCCCCCHHHHHHHHHh-CCHHHHHHHHHhCCHHH-HHhCCCCC
Confidence 467999999999999999983 44332 223444444 45555443
No 164
>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases []. This type of polymerases are thought to be involved in UV protection and mutation [, ]. ; PDB: 3PZP_B 2OH2_B 2W7O_B 3IN5_B 1T94_A 2W7P_B 2W8K_A 2AGQ_A 1RYR_A 3RAX_A ....
Probab=70.67 E-value=3 Score=28.00 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=12.8
Q ss_pred hhhcCCCCcHHHHHHHH
Q 011579 195 DLRKVPGIGNYTAGAIA 211 (482)
Q Consensus 195 ~L~~lpGIG~~TA~~il 211 (482)
.+.+++|||++|+.-+-
T Consensus 12 pi~~~~GIG~kt~~kL~ 28 (32)
T PF11798_consen 12 PIRKFWGIGKKTAKKLN 28 (32)
T ss_dssp BGGGSTTS-HHHHHHHH
T ss_pred CHHhhCCccHHHHHHHH
Confidence 36789999999998643
No 165
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this
Probab=69.07 E-value=11 Score=38.73 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=14.3
Q ss_pred CCCchhhhhcCCCCcHHHHHHHH
Q 011579 189 FPNTVSDLRKVPGIGNYTAGAIA 211 (482)
Q Consensus 189 ~p~~~~~L~~lpGIG~~TA~~il 211 (482)
.|....+|+++||||++||..+-
T Consensus 80 ~~~~l~~l~~i~GiGpk~a~~l~ 102 (307)
T cd00141 80 VPPGLLLLLRVPGVGPKTARKLY 102 (307)
T ss_pred chHHHHHHHcCCCCCHHHHHHHH
Confidence 45555666666666666665555
No 166
>PRK00024 hypothetical protein; Reviewed
Probab=68.47 E-value=12 Score=36.56 Aligned_cols=65 Identities=25% Similarity=0.365 Sum_probs=48.0
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHH
Q 011579 119 VWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR--RARFLLEGAKMIVA 184 (482)
Q Consensus 119 ~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~eel~~~i~~lG~~~--RA~~L~~~a~~i~~ 184 (482)
-|++.+|..=+..+.|.+...++++.|.+...+.+++.+++.+ ++|+|-.. .-..+.++++.+.+
T Consensus 28 ELLa~lL~~g~~~~~~~~LA~~LL~~fgsL~~l~~as~~eL~~-i~GIG~akA~~L~a~~El~~R~~~ 94 (224)
T PRK00024 28 ELLAILLRTGTKGKSVLDLARELLQRFGSLRGLLDASLEELQS-IKGIGPAKAAQLKAALELARRILA 94 (224)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHcCCHHHHHhCCHHHHhh-ccCccHHHHHHHHHHHHHHHHHHh
Confidence 4566677766677778888889999999999999999999875 47777543 33445556665554
No 167
>PF02371 Transposase_20: Transposase IS116/IS110/IS902 family; InterPro: IPR003346 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. It is often found with the transposase IS111A/IS1328/IS1533 family (see IPR002525 from INTERPRO) [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=68.39 E-value=4.1 Score=33.51 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.0
Q ss_pred hhhhcCCCCcHHHHHHHHHhhc
Q 011579 194 SDLRKVPGIGNYTAGAIASIAF 215 (482)
Q Consensus 194 ~~L~~lpGIG~~TA~~il~fa~ 215 (482)
+.|+++||||+-||..++...-
T Consensus 2 ~~l~sipGig~~~a~~llaeig 23 (87)
T PF02371_consen 2 ELLTSIPGIGPITAATLLAEIG 23 (87)
T ss_pred chhcCCCCccHHHHHHHHHHHc
Confidence 4588999999999999998763
No 168
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=65.43 E-value=4.6 Score=36.18 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.8
Q ss_pred CchhhhhcCCCCcHHHHHHHHH
Q 011579 191 NTVSDLRKVPGIGNYTAGAIAS 212 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~ 212 (482)
.+.++|.++|||||..|..|..
T Consensus 58 A~~~el~~lpGigP~~A~~IV~ 79 (132)
T PRK02515 58 SSVRAFRQFPGMYPTLAGKIVK 79 (132)
T ss_pred cCHHHHHHCCCCCHHHHHHHHH
Confidence 4678999999999999999994
No 169
>TIGR00608 radc DNA repair protein radc. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.35 E-value=17 Score=35.49 Aligned_cols=65 Identities=20% Similarity=0.259 Sum_probs=47.3
Q ss_pred HHHHHHHhhhccHH-HHHHHHHHHHHhC---CCHHHHHhCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHH
Q 011579 119 VWVSEVMLQQTRVQ-TVIDYYNRWMTKW---PTIHHLAKASLEEVNEMWAGLGYYR--RARFLLEGAKMIVA 184 (482)
Q Consensus 119 ~lVs~Il~Qqt~~~-~v~~~~~~l~~~~---pt~~~La~a~~eel~~~i~~lG~~~--RA~~L~~~a~~i~~ 184 (482)
-|++.+|..=+..+ .|.+.-++++++| ++...|.+++.+||.+ ++|+|-.. .-..+.++++.+..
T Consensus 18 ELLailL~~g~~~~~~~~~lA~~ll~~f~~~g~l~~l~~a~~~eL~~-i~GiG~aka~~l~a~~El~rR~~~ 88 (218)
T TIGR00608 18 ELLAIILRTGTPKGLDVLSLSKRLLDVFGRQDSLGHLLSAPPEELSS-VPGIGEAKAIQLKAAVELAKRYAK 88 (218)
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHhcccCCHHHHHhCCHHHHHh-CcCCcHHHHHHHHHHHHHHHHHHh
Confidence 35566776666666 7888888999999 8999999999999876 47777644 33444555555544
No 170
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair]
Probab=63.89 E-value=0.38 Score=50.03 Aligned_cols=167 Identities=41% Similarity=0.642 Sum_probs=104.0
Q ss_pred CChhHHHHHHHHHhhhhccCCCCC-------------C-CCCCCcccChhhhccCCCCCcceec-------ccccccccc
Q 011579 260 CRPGDFNQSLMELGAVICTPLNPN-------------C-TSCPVSDKCQAYSMSKRDNSVLVTS-------YPMKVLKAR 318 (482)
Q Consensus 260 ~~~~~~~~~l~~~G~~iC~~~~P~-------------C-~~Cpl~~~C~~~~~~~~~~~~~~~~-------~P~k~~K~k 318 (482)
..-+.+++.+|.+.+..--|..|- | ..-|.-+.|+-....+--+-.-++. ||.+..+.+
T Consensus 252 cSkgk~~q~~wkLA~qLVDP~RPGDFNQalMELGAt~CTpq~P~CS~CPvss~CrA~q~~Eqn~~i~~g~t~~~dve~~~ 331 (555)
T KOG2457|consen 252 CSKGKFFQSSWKLAAQLVDPSRPGDFNQALMELGATLCTPQKPSCSSCPVSSQCRAFQLSEQNRTISVGDTYPTDVEKAK 331 (555)
T ss_pred cchhhHHHHHHHHHHHhcCCCCCCcHHHHHHHhcCeeccCCCCCcCCCCcHHHHHHHhHhhhcceeecCCcCCccHhhcC
Confidence 345789999999999988776552 4 2445556777554443221111121 677777778
Q ss_pred cceeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCC--C
Q 011579 319 QRHDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPR--N 396 (482)
Q Consensus 319 ~~~~~vav~Ii~~~~~~~~~~~~~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~--~ 396 (482)
+++.+..+||.+|.... ..++.|.+-+-+||++ ++|.||||..-+-+..++.+.+.++.-.+++.+|+-+. +
T Consensus 332 P~~~~C~vCv~~ips~e----~~Qs~gv~~~p~~p~~--~~~reE~~~v~~~e~~dp~t~~~~ilv~~rp~~gllagLw~ 405 (555)
T KOG2457|consen 332 PRHDFCCVCVLEIPSLE----RNQSGGVFVLPKRPEQ--LAGREEFPSVILNEEADPATRRNAILVYLRPAFGLLAGLWK 405 (555)
T ss_pred CCCCceeEeecCCCCch----hhccCcEEEeccChhh--cCcccccceeeeeccCCchhhcceeEEEeccchhHHHHhhh
Confidence 88889999988654322 2256688889999987 89999999998876666766555432223333333221 0
Q ss_pred CcccccccccccEEEEcCceEEEEEEEEEEEEEeCCc
Q 011579 397 NCSIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGI 433 (482)
Q Consensus 397 ~~~~~~~~~l~~v~H~fth~~l~L~~~~~~~~~~~~~ 433 (482)
-+.+ +...+..+.|.|.|+.-.++++...+...++.
T Consensus 406 fpti-~~~e~se~~~~~a~~q~~v~~w~~~~~~t~~~ 441 (555)
T KOG2457|consen 406 FPTI-VSRELSEFVHIFAHIQRKVYVWLLVVQLTGGT 441 (555)
T ss_pred cCce-eccCcchHHHHHHHHHHHHHHHhcccccccch
Confidence 0111 12356677889999876566665544444433
No 171
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=63.71 E-value=4.9 Score=38.36 Aligned_cols=21 Identities=43% Similarity=0.395 Sum_probs=18.2
Q ss_pred hhhhhcCCCCcHHHHHHHHHh
Q 011579 193 VSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~f 213 (482)
...|++++||||++|-++|..
T Consensus 71 F~~L~~V~GIGpK~Al~iL~~ 91 (191)
T TIGR00084 71 FKELIKVNGVGPKLALAILSN 91 (191)
T ss_pred HHHHhCCCCCCHHHHHHHHhc
Confidence 467999999999999999763
No 172
>PRK14973 DNA topoisomerase I; Provisional
Probab=63.38 E-value=29 Score=41.09 Aligned_cols=88 Identities=11% Similarity=0.037 Sum_probs=58.6
Q ss_pred hCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHH-HHHHc------CCCCCCchhhhhcCCCCcHHHHHHHHHhhc
Q 011579 144 KWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAK-MIVAE------GDGFPNTVSDLRKVPGIGNYTAGAIASIAF 215 (482)
Q Consensus 144 ~~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~-~i~~~------~g~~p~~~~~L~~lpGIG~~TA~~il~fa~ 215 (482)
.|-++++++.|++++|.. -.|+.- .+..+...|. .++.. ...+...+.+|++++|||+.|++..-.-+.
T Consensus 822 G~~~~~d~~~a~p~~La~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~vkg~ge~t~~~l~~ag~ 898 (936)
T PRK14973 822 GFDTPEDFCSVHPAYLAL---KTGISPETICRHAKLVCEKLGRPVPEKISKAAFERGRAELLSVPGLGETTLEKLYLAGV 898 (936)
T ss_pred cCCCHHHHHhcCHHHHhc---CCCCChhhHHHHHHHHHHHhcCCCchhhhhhhhcccchhhhhccCCCHHHHHHHHHcCC
Confidence 488999999999999854 478876 7777755555 44432 112344566799999999999976665555
Q ss_pred CCeeeeecCchhhhHHhhh
Q 011579 216 KEVVPVVDGNVIRVLARLK 234 (482)
Q Consensus 216 ~~p~~~vD~~v~Rvl~Rl~ 234 (482)
-.+.-++-..+.++..+-|
T Consensus 899 ~~~e~l~~~d~~~la~~~~ 917 (936)
T PRK14973 899 YDGDLLVSADPKKLAKVTG 917 (936)
T ss_pred CCHHHhccCCHHHHhhhcC
Confidence 4442222225666666544
No 173
>smart00279 HhH2 Helix-hairpin-helix class 2 (Pol1 family) motifs.
Probab=62.38 E-value=5.5 Score=27.52 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=13.8
Q ss_pred hhcCCCCcHHHHHHHHH
Q 011579 196 LRKVPGIGNYTAGAIAS 212 (482)
Q Consensus 196 L~~lpGIG~~TA~~il~ 212 (482)
+-.+||||++||--++.
T Consensus 18 i~Gv~giG~ktA~~ll~ 34 (36)
T smart00279 18 IPGVKGIGPKTALKLLR 34 (36)
T ss_pred CCCCCcccHHHHHHHHH
Confidence 35789999999987763
No 174
>PRK08609 hypothetical protein; Provisional
Probab=61.08 E-value=13 Score=41.58 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=18.6
Q ss_pred CCCCCchhhhhcCCCCcHHHHHHHH
Q 011579 187 DGFPNTVSDLRKVPGIGNYTAGAIA 211 (482)
Q Consensus 187 g~~p~~~~~L~~lpGIG~~TA~~il 211 (482)
.++|....+|+++|||||+||..+-
T Consensus 81 ~~~p~~~~~l~~i~GiGpk~a~~l~ 105 (570)
T PRK08609 81 KEVPEGLLPLLKLPGLGGKKIAKLY 105 (570)
T ss_pred hhCcHHHHHHhcCCCCCHHHHHHHH
Confidence 3567777888888888888886554
No 175
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=60.13 E-value=9.9 Score=36.63 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=29.5
Q ss_pred hhhhhcCCCCcHHHHHHHHHh-hcCCeeeeecCchhhhHHhhhccc
Q 011579 193 VSDLRKVPGIGNYTAGAIASI-AFKEVVPVVDGNVIRVLARLKAIS 237 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~f-a~~~p~~~vD~~v~Rvl~Rl~~~~ 237 (482)
...|.++.||||++|=.||+. ..+.-.-+|-..=...+.++-++.
T Consensus 73 F~~Li~V~GIGpK~Al~iLs~~~~~~l~~aI~~~D~~~L~~ipGIG 118 (203)
T PRK14602 73 FIVLISISKVGAKTALAILSQFRPDDLRRLVAEEDVAALTRVSGIG 118 (203)
T ss_pred HHHHhCCCCcCHHHHHHHHhhCCHHHHHHHHHhCCHHHHhcCCCcC
Confidence 466899999999999999984 444322233344445556665554
No 176
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=59.28 E-value=11 Score=36.22 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=29.0
Q ss_pred hhhhhcCCCCcHHHHHHHHHh-hcCCeeeeecCchhhhHHhhhccc
Q 011579 193 VSDLRKVPGIGNYTAGAIASI-AFKEVVPVVDGNVIRVLARLKAIS 237 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~f-a~~~p~~~vD~~v~Rvl~Rl~~~~ 237 (482)
.+.|+++.||||++|=+||+- ..+.-.-+|..+=...+.++-++.
T Consensus 71 F~~LisVsGIGPK~ALaILs~~~~~el~~aI~~~D~~~L~~vpGIG 116 (196)
T PRK13901 71 FEELIGVDGIGPRAALRVLSGIKYNEFRDAIDREDIELISKVKGIG 116 (196)
T ss_pred HHHHhCcCCcCHHHHHHHHcCCCHHHHHHHHHhCCHHHHhhCCCCC
Confidence 467999999999999999963 333222233444445556665553
No 177
>PRK13482 DNA integrity scanning protein DisA; Provisional
Probab=59.11 E-value=21 Score=37.35 Aligned_cols=48 Identities=25% Similarity=0.455 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHc
Q 011579 136 DYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAE 185 (482)
Q Consensus 136 ~~~~~l~~~~pt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~ 185 (482)
+..+++.+.|.+.+.+..|+.++|.++ .|+| -.||+.|++.++.+.+.
T Consensus 298 ~iAk~Ll~~FGSL~~Il~As~eeL~~V-eGIG-e~rA~~I~e~l~Rl~e~ 345 (352)
T PRK13482 298 AVIENLVEHFGSLQGLLAASIEDLDEV-EGIG-EVRARAIREGLSRLAEQ 345 (352)
T ss_pred HHHHHHHHHcCCHHHHHcCCHHHHhhC-CCcC-HHHHHHHHHHHHHHHHH
Confidence 345678888999999999999998654 6666 23788888888877764
No 178
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=59.10 E-value=28 Score=28.37 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhC-CCHHHHHhCCHHHHHHHHhccCcHHH---HHHHHHHHHHHH
Q 011579 132 QTVIDYYNRWMTKW-PTIHHLAKASLEEVNEMWAGLGYYRR---ARFLLEGAKMIV 183 (482)
Q Consensus 132 ~~v~~~~~~l~~~~-pt~~~La~a~~eel~~~i~~lG~~~R---A~~L~~~a~~i~ 183 (482)
++...||..|++.- .+.++|..+.++|..+++.-+|...| .++++++.....
T Consensus 19 AnLl~Yyd~fi~~GgDDvqQL~~~~e~eF~eim~lvGM~sKPLHVrRlqKAL~ew~ 74 (82)
T PF04904_consen 19 ANLLQYYDTFIAQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWS 74 (82)
T ss_pred hhHHHHHHHHHHHcChhHHHHHhcChHHHHHHHHHhCccCccHHHHHHHHHHHHHh
Confidence 44567899998764 58999999999999999999999875 555555554443
No 179
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model.
Probab=58.99 E-value=8.5 Score=30.08 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.7
Q ss_pred chhhhhc-CCCCcHHHHHHHHHh
Q 011579 192 TVSDLRK-VPGIGNYTAGAIASI 213 (482)
Q Consensus 192 ~~~~L~~-lpGIG~~TA~~il~f 213 (482)
..++|.. +||||..+|..|+.+
T Consensus 14 ~~~~L~~~ipgig~~~a~~Il~~ 36 (69)
T TIGR00426 14 TAEELQRAMNGVGLKKAEAIVSY 36 (69)
T ss_pred CHHHHHhHCCCCCHHHHHHHHHH
Confidence 4678999 999999999999987
No 180
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=58.69 E-value=27 Score=33.28 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=29.2
Q ss_pred CeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCC
Q 011579 345 GVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDP 394 (482)
Q Consensus 345 gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~ 394 (482)
-.||+-|.... .|-+|||++..||++ .+.|.|.|.+-++...
T Consensus 58 PHvLLLq~~~~-----~fkLPGg~l~~gE~e---~~gLkrkL~~~l~~~~ 99 (188)
T PF13869_consen 58 PHVLLLQIGNT-----FFKLPGGRLRPGEDE---IEGLKRKLTEKLSPED 99 (188)
T ss_dssp EEEEEEEETTT-----EEE-SEEE--TT--H---HHHHHHHHHHHHB-SS
T ss_pred cEEEEEeccCc-----cccCCccEeCCCCCh---hHHHHHHHHHHcCCCc
Confidence 36888886443 699999999999887 8999999999888653
No 181
>PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains. There is a general polymerase fold consisting of three subdomains that have been likened to the fingers, palm, and thumb of a right hand. This entry represents the central three-helical region of DNA polymerase lambda referred to as the F and G helices of the fingers domain. Contacts with DNA involve this conserved helix-hairpin-helix motif in the fingers region which interacts with the primer strand. This motif is common to several DNA binding proteins and confers a sequence-independent interaction with the DNA backbone []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1KDH_A 1KEJ_A 1JMS_A 2IHM_A 3OGU_A 1MQ2_A 2P66_A 7ICI_A 1ZQN_A 1ZQK_A ....
Probab=58.07 E-value=8.6 Score=28.86 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=16.0
Q ss_pred hhhhcCCCCcHHHHHHHHHhhcC
Q 011579 194 SDLRKVPGIGNYTAGAIASIAFK 216 (482)
Q Consensus 194 ~~L~~lpGIG~~TA~~il~fa~~ 216 (482)
..+..+.|||+.||.-....++.
T Consensus 2 ~~f~~I~GVG~~tA~~w~~~G~r 24 (52)
T PF10391_consen 2 KLFTGIWGVGPKTARKWYAKGIR 24 (52)
T ss_dssp HHHHTSTT--HHHHHHHHHTT--
T ss_pred cchhhcccccHHHHHHHHHhCCC
Confidence 46789999999999988776554
No 182
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=57.66 E-value=12 Score=35.43 Aligned_cols=45 Identities=29% Similarity=0.266 Sum_probs=29.6
Q ss_pred hhhhhcCCCCcHHHHHHHHHh-hcCCeeeeecCchhhhHHhhhccc
Q 011579 193 VSDLRKVPGIGNYTAGAIASI-AFKEVVPVVDGNVIRVLARLKAIS 237 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~f-a~~~p~~~vD~~v~Rvl~Rl~~~~ 237 (482)
.+.|.++.||||++|=+||+- ..+.-.-+|..+=...+.++-++.
T Consensus 72 F~~Li~VsGIGpK~Al~ILs~~~~~el~~aI~~~D~~~L~~vpGIG 117 (183)
T PRK14601 72 FEMLLKVNGIGANTAMAVCSSLDVNSFYKALSLGDESVLKKVPGIG 117 (183)
T ss_pred HHHHhccCCccHHHHHHHHcCCCHHHHHHHHHhCCHHHHhhCCCCC
Confidence 467999999999999999964 333323334444445556665554
No 183
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=57.65 E-value=11 Score=36.03 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=29.4
Q ss_pred hhhhhcCCCCcHHHHHHHHH-hhcCCeeeeecCchhhhHHhhhccc
Q 011579 193 VSDLRKVPGIGNYTAGAIAS-IAFKEVVPVVDGNVIRVLARLKAIS 237 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~-fa~~~p~~~vD~~v~Rvl~Rl~~~~ 237 (482)
.+.|+++.||||++|=+||+ +..+.-.-+|..+=...+.++-++.
T Consensus 71 F~~L~~V~GIGpK~AL~iLs~~~~~~l~~aI~~~D~~~L~kvpGIG 116 (197)
T PRK14603 71 FELLLGVSGVGPKLALALLSALPPALLARALLEGDARLLTSASGVG 116 (197)
T ss_pred HHHHhCcCCcCHHHHHHHHcCCCHHHHHHHHHhCCHHHHhhCCCCC
Confidence 46799999999999999998 4444433333333344455555553
No 184
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=57.25 E-value=26 Score=34.29 Aligned_cols=67 Identities=24% Similarity=0.376 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHc
Q 011579 118 GVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR--RARFLLEGAKMIVAE 185 (482)
Q Consensus 118 ~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~eel~~~i~~lG~~~--RA~~L~~~a~~i~~~ 185 (482)
.-|++.+|--=|.-..|.+.-.++.+.|.+...|..|+.+++.. ++|+|... ..+.+.++++.+...
T Consensus 27 ~ELLailLrtG~~~~~~~~la~~lL~~fg~L~~l~~a~~~el~~-v~GiG~aka~~l~a~~El~~R~~~~ 95 (224)
T COG2003 27 AELLAILLRTGTKGESVLDLAKELLQEFGSLAELLKASVEELSS-VKGIGLAKAIQIKAAIELGKRILAE 95 (224)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcccHHHHHhCCHHHHhh-CCCccHHHHHHHHHHHHHHHHHHHH
Confidence 45678788888888889999999999999999999999999865 48888765 667777788777764
No 185
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=57.07 E-value=11 Score=35.81 Aligned_cols=45 Identities=29% Similarity=0.312 Sum_probs=28.9
Q ss_pred hhhhhcCCCCcHHHHHHHHHh-hcCCeeeeecCchhhhHHhhhccc
Q 011579 193 VSDLRKVPGIGNYTAGAIASI-AFKEVVPVVDGNVIRVLARLKAIS 237 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~f-a~~~p~~~vD~~v~Rvl~Rl~~~~ 237 (482)
.+.|+++.||||++|=+||+- ..+.-.-++...=...+.++-++.
T Consensus 72 F~~Li~V~GIGpK~AL~iLs~~~~~el~~aI~~~D~~~L~~vpGIG 117 (188)
T PRK14606 72 FLSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGIS 117 (188)
T ss_pred HHHHhccCCccHHHHHHHHcCCCHHHHHHHHHhCCHHHHhhCCCCC
Confidence 467999999999999999963 333322233344444556665553
No 186
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=56.67 E-value=16 Score=35.69 Aligned_cols=55 Identities=27% Similarity=0.266 Sum_probs=41.5
Q ss_pred CCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCC----CCCchhhhhcCCCCcHHHHHHH
Q 011579 154 ASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDG----FPNTVSDLRKVPGIGNYTAGAI 210 (482)
Q Consensus 154 a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~----~p~~~~~L~~lpGIG~~TA~~i 210 (482)
++..||..++=..|- |-+..+.+|+.+..+.|. ...+.++|++++|||+.-|--+
T Consensus 24 Lsd~ELLailLrtG~--~~~~~~~la~~lL~~fg~L~~l~~a~~~el~~v~GiG~aka~~l 82 (224)
T COG2003 24 LSDAELLAILLRTGT--KGESVLDLAKELLQEFGSLAELLKASVEELSSVKGIGLAKAIQI 82 (224)
T ss_pred cchHHHHHHHHhcCC--CCCCHHHHHHHHHHHcccHHHHHhCCHHHHhhCCCccHHHHHHH
Confidence 455777777766666 667788899999987544 4578899999999998655433
No 187
>PF14229 DUF4332: Domain of unknown function (DUF4332)
Probab=56.41 E-value=24 Score=31.08 Aligned_cols=77 Identities=23% Similarity=0.265 Sum_probs=49.4
Q ss_pred CCCHHHHHhCCHHHHHH--HHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHhhcCCeeeee
Q 011579 145 WPTIHHLAKASLEEVNE--MWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVV 222 (482)
Q Consensus 145 ~pt~~~La~a~~eel~~--~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p~~~v 222 (482)
.-|.++|.+++...... +...+|... ++|.+... ..+|..+||||+..|..+.--++.-..=..
T Consensus 16 I~t~~~Ll~~~~~~~~r~~La~~~~i~~--~~l~~w~~------------~AdL~ri~gi~~~~a~LL~~AGv~Tv~~LA 81 (122)
T PF14229_consen 16 IKTTGDLLEAGDTPLGRKALAKKLGISE--RNLLKWVN------------QADLMRIPGIGPQYAELLEHAGVDTVEELA 81 (122)
T ss_pred CCcHHHHHHcCCCHHHHHHHHHhcCCCH--HHHHHHHh------------HHHhhhcCCCCHHHHHHHHHhCcCcHHHHH
Confidence 45888888887777665 555566633 33333222 345688999999999988877776543334
Q ss_pred cCchhhhHHhhhc
Q 011579 223 DGNVIRVLARLKA 235 (482)
Q Consensus 223 D~~v~Rvl~Rl~~ 235 (482)
..+..++..++..
T Consensus 82 ~~~p~~L~~~l~~ 94 (122)
T PF14229_consen 82 QRNPQNLHQKLGR 94 (122)
T ss_pred hCCHHHHHHHHHH
Confidence 5556666665554
No 188
>cd00080 HhH2_motif Helix-hairpin-helix class 2 (Pol1 family) motif. HhH2 domains are found in Rad2 family of prokaryotic and eukaryotic replication and repair nucleases, i.e., DNA polymerase I, Taq DNA polymerase, DNA repair protein Rad2 endonuclease, flap endonuclease, exonuclease I and IX, 5'-3' exonuclease and also bacteriophage Rnase H. These nucleases degrade RNA-DNA or DNA-DNA duplexes, or both and play essential roles in DNA duplication, repair, and recombination.
Probab=53.53 E-value=9.5 Score=30.61 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=15.5
Q ss_pred hhhcCCCCcHHHHHHHHHh
Q 011579 195 DLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 195 ~L~~lpGIG~~TA~~il~f 213 (482)
.+-.+||||++||.-++.-
T Consensus 23 ~i~gv~giG~k~A~~ll~~ 41 (75)
T cd00080 23 NIPGVPGIGPKTALKLLKE 41 (75)
T ss_pred cCCCCCcccHHHHHHHHHH
Confidence 3457999999999988854
No 189
>COG1555 ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]
Probab=52.88 E-value=23 Score=32.38 Aligned_cols=55 Identities=33% Similarity=0.494 Sum_probs=37.6
Q ss_pred HHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHH
Q 011579 151 LAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIAS 212 (482)
Q Consensus 151 La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~ 212 (482)
|-.|+.+|| +.+-++|-. +|+.|++-- +++|.| .+.++|.+.+|||++|.+-..-
T Consensus 91 iNtAs~eeL-~~lpgIG~~-kA~aIi~yR----e~~G~f-~sv~dL~~v~GiG~~~~ekl~~ 145 (149)
T COG1555 91 INTASAEEL-QALPGIGPK-KAQAIIDYR----EENGPF-KSVDDLAKVKGIGPKTLEKLKD 145 (149)
T ss_pred ccccCHHHH-HHCCCCCHH-HHHHHHHHH----HHcCCC-CcHHHHHhccCCCHHHHHHHHh
Confidence 566888888 566677752 555554422 235633 6799999999999999876543
No 190
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=52.22 E-value=13 Score=41.81 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=31.2
Q ss_pred HHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHh
Q 011579 158 EVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 158 el~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~f 213 (482)
.+...|-++|... -...-+.+|+.+-.-..-.-.+.++|.+++|||..+|..|..|
T Consensus 506 ~l~r~l~aLGIr~VG~~~Ak~La~~f~sl~~l~~a~~e~l~~i~giG~~vA~si~~f 562 (667)
T COG0272 506 PLARFLYALGIRHVGETTAKSLARHFGTLEALLAASEEELASIPGIGEVVARSIIEF 562 (667)
T ss_pred CHHHHHHHcCCchhhHHHHHHHHHHhhhHHHHHhcCHHHHhhccchhHHHHHHHHHH
Confidence 3444555666644 3333333333222111112346788888999999998888765
No 191
>KOG2841 consensus Structure-specific endonuclease ERCC1-XPF, ERCC1 component [Replication, recombination and repair]
Probab=51.85 E-value=19 Score=35.47 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=32.7
Q ss_pred HHHHHhCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHH
Q 011579 139 NRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKM 181 (482)
Q Consensus 139 ~~l~~~~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~ 181 (482)
..+...|+|.+++..|+.+||+.+ -|+.. ||++|+++..+
T Consensus 209 ~~LL~~FgsLq~~~~AS~~ele~~---~G~G~~kak~l~~~l~~ 249 (254)
T KOG2841|consen 209 QLLLQKFGSLQQISNASEGELEQC---PGLGPAKAKRLHKFLHQ 249 (254)
T ss_pred HHHHHhcccHHHHHhcCHhHHHhC---cCcCHHHHHHHHHHHhc
Confidence 357788999999999999999754 56666 99999987654
No 192
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=50.52 E-value=22 Score=40.42 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=18.5
Q ss_pred chhhhhcCCCCcHHHHHHHHHhh
Q 011579 192 TVSDLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 192 ~~~~L~~lpGIG~~TA~~il~fa 214 (482)
+.++|++++|||+.+|..|..|-
T Consensus 539 ~~e~l~~i~giG~~~a~si~~ff 561 (669)
T PRK14350 539 ALSKLLKIKGIGEKIALNIIEAF 561 (669)
T ss_pred CHHHHhhCCCccHHHHHHHHHHH
Confidence 56778888888888888888773
No 193
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=49.72 E-value=26 Score=39.11 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=49.7
Q ss_pred HHHhhhccHHH---HHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcC
Q 011579 123 EVMLQQTRVQT---VIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKV 199 (482)
Q Consensus 123 ~Il~Qqt~~~~---v~~~~~~l~~~~pt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~l 199 (482)
--++|+.++++ |+.+.+++..+. ....+ -|.|+|--+|.+.|..+.. +.+ ---.+.++|.++
T Consensus 487 l~lLq~iRDEaHRFAit~hRk~R~k~-------~s~L~----~I~GiG~kr~~~LL~~Fgs-~~~---I~~As~eeL~~v 551 (574)
T PRK14670 487 LRILQNVRDEAHRKANGFNKKLRENI-------KLNYT----KIKGIGEKKAKKILKSLGT-YKD---ILLLNEDEIAEK 551 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-------ccccc----cCCCCCHHHHHHHHHHhCC-HHH---HHhCCHHHHHhC
Confidence 35788888776 677777776661 12223 3578888665444433321 111 113578999999
Q ss_pred CCCcHHHHHHHHHhh
Q 011579 200 PGIGNYTAGAIASIA 214 (482)
Q Consensus 200 pGIG~~TA~~il~fa 214 (482)
||||.++|..|..+-
T Consensus 552 ~gi~~~~A~~I~~~l 566 (574)
T PRK14670 552 MKINIKMAKKIKKFA 566 (574)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999997653
No 194
>KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair]
Probab=49.50 E-value=29 Score=35.67 Aligned_cols=65 Identities=23% Similarity=0.335 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHcCCCCC-CchhhhhcCCCCcHHHHHHHHHhh-cCC-e---eeeec--CchhhhHHhhhccc
Q 011579 171 RARFLLEGAKMIVAEGDGFP-NTVSDLRKVPGIGNYTAGAIASIA-FKE-V---VPVVD--GNVIRVLARLKAIS 237 (482)
Q Consensus 171 RA~~L~~~a~~i~~~~g~~p-~~~~~L~~lpGIG~~TA~~il~fa-~~~-p---~~~vD--~~v~Rvl~Rl~~~~ 237 (482)
|++....+|..|..- .+| .+.+++.+|||||+++|..|--|. -|. + .+.-| .-+...+.+.+++.
T Consensus 34 r~~~y~~Aasvlk~~--p~~I~S~~ea~~lP~iG~kia~ki~EiletG~l~ele~v~~de~~~~lklFtnifGvG 106 (353)
T KOG2534|consen 34 RARAYRRAASVLKSL--PFPITSGEEAEKLPGIGPKIAEKIQEILETGVLRELEAVRNDERSQSLKLFTNIFGVG 106 (353)
T ss_pred HHHHHHHHHHHHHhC--CCCcccHHHhcCCCCCCHHHHHHHHHHHHcCCchhHHHHhcchhHHHHHHHHHHhccC
Confidence 777777777666542 223 568999999999999999987553 343 1 12211 12345666777765
No 195
>COG1415 Uncharacterized conserved protein [Function unknown]
Probab=49.25 E-value=12 Score=38.69 Aligned_cols=67 Identities=25% Similarity=0.373 Sum_probs=41.3
Q ss_pred CCchhhhhcCCCCcHHHHHHHHHhh---cCCeeeeecCchhhhHHhhhcccCCCCC--hHHHHHHHHHHHhhcC
Q 011579 190 PNTVSDLRKVPGIGNYTAGAIASIA---FKEVVPVVDGNVIRVLARLKAISANPKD--TSTVKNFWKLATQLVD 258 (482)
Q Consensus 190 p~~~~~L~~lpGIG~~TA~~il~fa---~~~p~~~vD~~v~Rvl~Rl~~~~~~~~~--~~~~~~l~~~~~~l~~ 258 (482)
|++.++|+-+||||+.|+-++.+.| ||.|.--=|- .+....+|+-+.-|.. ..+..++...++.++.
T Consensus 274 p~Df~elLl~~GiGpstvRALalVAEvIyg~~~s~rDP--~~yafA~GGKDgvP~pV~~~~yde~I~~l~~~ve 345 (373)
T COG1415 274 PDDFEELLLVPGIGPSTVRALALVAEVIYGEPPSFRDP--VKYAFAVGGKDGVPFPVNRKTYDELIEFLEELVE 345 (373)
T ss_pred cccHHHHHhccCCCHHHHHHHHHHHHHHhCCCCCcCCc--hhhhhhhcCCCCCCCCcchhhHHHHHHHHHHHHH
Confidence 7899999999999999999887775 6765222222 1255666665543321 2233344445555544
No 196
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this
Probab=48.60 E-value=16 Score=37.42 Aligned_cols=59 Identities=24% Similarity=0.358 Sum_probs=41.2
Q ss_pred HHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHhh-cCC
Q 011579 158 EVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIA-FKE 217 (482)
Q Consensus 158 el~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~fa-~~~ 217 (482)
++..++.-.|=.. |++...++|..|..-.-.+ ++.+++.+|||||+.+|+.|--+. -|.
T Consensus 9 ~ia~~~e~~~~~~~r~~aY~~Aa~~l~~l~~~i-~~~~~~~~ipgiG~~ia~kI~E~~~tG~ 69 (307)
T cd00141 9 ELADLLELLGGNPFRVRAYRKAARALESLPEPI-ESLEEAKKLPGIGKKIAEKIEEILETGK 69 (307)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHhCCccc-CCHHHhcCCCCccHHHHHHHHHHHHcCC
Confidence 3444444444323 8888888898887754444 446688999999999999997653 344
No 197
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=47.46 E-value=12 Score=36.71 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=14.8
Q ss_pred hhhhcCCCCcHHHHHHHHHhhcCC
Q 011579 194 SDLRKVPGIGNYTAGAIASIAFKE 217 (482)
Q Consensus 194 ~~L~~lpGIG~~TA~~il~fa~~~ 217 (482)
+.|..|||||+.+|..++..+|+-
T Consensus 3 ~~L~~IpGIG~krakkLl~~GF~S 26 (232)
T PRK12766 3 EELEDISGVGPSKAEALREAGFES 26 (232)
T ss_pred cccccCCCcCHHHHHHHHHcCCCC
Confidence 345666666666666666665553
No 198
>smart00483 POLXc DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases
Probab=46.80 E-value=13 Score=38.57 Aligned_cols=31 Identities=19% Similarity=0.096 Sum_probs=25.1
Q ss_pred CCCCCCchhhhhcCCCCcHHHHHHHHHhhcCCe
Q 011579 186 GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEV 218 (482)
Q Consensus 186 ~g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p 218 (482)
...+|....+|+++||||++||..+-- +|..
T Consensus 81 ~~~~p~~l~~l~~i~GiGpk~a~~l~~--lGi~ 111 (334)
T smart00483 81 NDEVYKSLKLFTNVFGVGPKTAAKWYR--KGIR 111 (334)
T ss_pred cCcHHHHHHHHHccCCcCHHHHHHHHH--hCCC
Confidence 456788899999999999999987755 5543
No 199
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=46.62 E-value=11 Score=42.59 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=38.2
Q ss_pred HHHHHhC--CCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCC-CchhhhhcCCCCcHHHHHHHHH
Q 011579 139 NRWMTKW--PTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFP-NTVSDLRKVPGIGNYTAGAIAS 212 (482)
Q Consensus 139 ~~l~~~~--pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p-~~~~~L~~lpGIG~~TA~~il~ 212 (482)
.+|++.. -++.+|..+..++|.++ . |+.. .|.+|++..+.-.. .| ...-..+.|||||+++|..++.
T Consensus 446 ~~L~~~g~I~~~~Dl~~L~~~~L~~L-~--GfG~Ksa~nIl~~Ie~sk~----~~l~r~L~aLgIpgVG~~~ak~L~~ 516 (652)
T TIGR00575 446 EQLFEKKLVRSVADLYALKKEDLLEL-E--GFGEKSAQNLLNAIEKSKE----KPLARLLFALGIRHVGEVTAKNLAK 516 (652)
T ss_pred HHHHHcCCcCCHHHHHhcCHHHHhhc-c--CccHHHHHHHHHHHHHhcc----CcHHHHHhhccCCCcCHHHHHHHHH
Confidence 3455432 48888888888776542 2 5545 57777665543221 11 1122335677777777776653
No 200
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=45.21 E-value=1.3e+02 Score=31.35 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=39.6
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHhCC-CHHHHHhCCHHHHHHH
Q 011579 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWP-TIHHLAKASLEEVNEM 162 (482)
Q Consensus 114 ~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~p-t~~~La~a~~eel~~~ 162 (482)
.=|.+-+++-.+.--++.+.|..+|.+|.+.|. ..+.|.+|+.|+|..+
T Consensus 303 liPLaeIi~~~~g~gi~tK~V~~~we~lv~~FGtEi~vLi~a~~e~La~V 352 (403)
T COG1379 303 LIPLAEIISMALGKGITTKAVKRTWERLVRAFGTEIDVLIDAPIEELARV 352 (403)
T ss_pred cccHHHHHHHHhccceechhHHHHHHHHHHHhcchhhhHhcCCHHHHhhh
Confidence 346777777666777788999999999999998 4788999999998543
No 201
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=44.79 E-value=10 Score=43.08 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=20.5
Q ss_pred CCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHH
Q 011579 146 PTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAK 180 (482)
Q Consensus 146 pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~ 180 (482)
-++++|..+..++|..+ =||.. .|.+|++..+
T Consensus 468 ~~i~DL~~L~~~~L~~l---~gfG~Ksa~~ll~~Ie 500 (665)
T PRK07956 468 HDPADLFKLTAEDLLGL---EGFGEKSAQNLLDAIE 500 (665)
T ss_pred CCHHHHHhcCHHHHhcC---cCcchHHHHHHHHHHH
Confidence 58888888887776432 25655 5666665544
No 202
>PRK08609 hypothetical protein; Provisional
Probab=43.57 E-value=22 Score=39.63 Aligned_cols=17 Identities=47% Similarity=0.645 Sum_probs=8.0
Q ss_pred hhhcCCCCcHHHHHHHH
Q 011579 195 DLRKVPGIGNYTAGAIA 211 (482)
Q Consensus 195 ~L~~lpGIG~~TA~~il 211 (482)
+|.+|||||+.+|+.|-
T Consensus 49 ~l~~ipgIG~~ia~kI~ 65 (570)
T PRK08609 49 DFTKLKGIGKGTAEVIQ 65 (570)
T ss_pred hhccCCCcCHHHHHHHH
Confidence 44444444444444443
No 203
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=43.24 E-value=15 Score=34.88 Aligned_cols=43 Identities=23% Similarity=0.345 Sum_probs=27.9
Q ss_pred hhhhhcCCCCcHHHHHHHHH-hhcCCe-eeeecCchhhhHHhhhccc
Q 011579 193 VSDLRKVPGIGNYTAGAIAS-IAFKEV-VPVVDGNVIRVLARLKAIS 237 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~-fa~~~p-~~~vD~~v~Rvl~Rl~~~~ 237 (482)
.+.|+++.||||++|=+||+ +..+.- ..+.-..+.++ ++-++.
T Consensus 72 F~~LisV~GIGpK~Al~iLs~~~~~~l~~aI~~~D~~~L--~vpGIG 116 (186)
T PRK14600 72 LRMLVKVSGVNYKTAMSILSKLTPEQLFSAIVNEDKAAL--KVNGIG 116 (186)
T ss_pred HHHHhCcCCcCHHHHHHHHccCCHHHHHHHHHcCCHhhe--ECCCCc
Confidence 46789999999999999998 344432 23334444333 565553
No 204
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=41.24 E-value=15 Score=41.88 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=31.6
Q ss_pred CCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhh--hcCCCCcHHHHHHHH
Q 011579 146 PTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDL--RKVPGIGNYTAGAIA 211 (482)
Q Consensus 146 pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L--~~lpGIG~~TA~~il 211 (482)
-++.+|-.+..++|..+ -|+.. .|.+|++.-+.-. ..|- ...| +.|||||+.+|..++
T Consensus 485 ~~~~Dl~~L~~~~L~~l---~g~g~Ksa~~Ll~~Ie~sk----~~~l-~r~l~ALgIpgIG~~~ak~L~ 545 (689)
T PRK14351 485 ESLADLYDLTVADLAEL---EGWGETSAENLLAELEASR----EPPL-ADFLVALGIPEVGPTTARNLA 545 (689)
T ss_pred CCHHHHHHcCHHHHhcC---cCcchhHHHHHHHHHHHHc----cCCH-HHHHHHcCCCCcCHHHHHHHH
Confidence 47888888887775432 25555 5666655443211 1110 1111 457777777777665
No 205
>PRK13482 DNA integrity scanning protein DisA; Provisional
Probab=40.53 E-value=24 Score=36.90 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCCC----CCchhhhhcCCCCcHHHHHHH
Q 011579 177 EGAKMIVAEGDGF----PNTVSDLRKVPGIGNYTAGAI 210 (482)
Q Consensus 177 ~~a~~i~~~~g~~----p~~~~~L~~lpGIG~~TA~~i 210 (482)
.+|+.++++.|.+ ..+.++|.+++|||+..|..|
T Consensus 298 ~iAk~Ll~~FGSL~~Il~As~eeL~~VeGIGe~rA~~I 335 (352)
T PRK13482 298 AVIENLVEHFGSLQGLLAASIEDLDEVEGIGEVRARAI 335 (352)
T ss_pred HHHHHHHHHcCCHHHHHcCCHHHHhhCCCcCHHHHHHH
Confidence 4566777765543 356778888888888888763
No 206
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=40.40 E-value=57 Score=20.43 Aligned_cols=28 Identities=14% Similarity=0.490 Sum_probs=22.8
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHhCCC
Q 011579 120 WVSEVMLQQTRVQTVIDYYNRWMTKWPT 147 (482)
Q Consensus 120 lVs~Il~Qqt~~~~v~~~~~~l~~~~pt 147 (482)
.++.+..++...+.+..++.++++.||+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3456666677889999999999999996
No 207
>PF00416 Ribosomal_S13: Ribosomal protein S13/S18; InterPro: IPR001892 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S13 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S13 is known to be involved in binding fMet-tRNA and, hence, in the initiation of translation. It is a basic protein of 115 to 177 amino-acid residues that contains thee helices and a beta-hairpin in the core of the protein, forming a helix-two turns-helix (H2TH) motif, and a non-globular C-terminal extension. This family of ribosomal proteins is present in prokaryotes, eukaryotes and archaea [, ].; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3BBN_M 2QBB_M 3I1M_M 3OFP_M 3OFX_M 3OFO_M 1VS5_M 3OAQ_M 2QAL_M 3J18_M ....
Probab=39.82 E-value=23 Score=30.41 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=18.9
Q ss_pred hhhhhcCCCCcHHHHHHHHHhh
Q 011579 193 VSDLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~fa 214 (482)
.-.|.++.|||+.+|..|+...
T Consensus 14 ~~aLt~IyGIG~~~A~~Ic~~l 35 (107)
T PF00416_consen 14 YIALTKIYGIGRRKAKQICKKL 35 (107)
T ss_dssp HHHHTTSTTBCHHHHHHHHHHT
T ss_pred HhHHhhhhccCHHHHHHHHHHc
Confidence 4679999999999999988653
No 208
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=39.59 E-value=40 Score=37.68 Aligned_cols=75 Identities=27% Similarity=0.344 Sum_probs=42.4
Q ss_pred HHhhhccHHH---HHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCC
Q 011579 124 VMLQQTRVQT---VIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVP 200 (482)
Q Consensus 124 Il~Qqt~~~~---v~~~~~~l~~~~pt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~lp 200 (482)
.++|+.++++ |+.+.+++... ..-....+.|+|-. |++.|++--.-+.+ -+..+.++|.++|
T Consensus 499 ~lL~~irDEaHRFAi~~hR~~r~~-----------~~~~L~~IpGIG~k-r~~~LL~~FGS~~~---I~~As~eeL~~vp 563 (577)
T PRK14668 499 HLLQRVRDEAHRFAVQYHQTLRDD-----------VSTVLDDVPGVGPE-TRKRLLRRFGSVEG---VREASVEDLRDVP 563 (577)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH-----------HHhHHhcCCCCCHH-HHHHHHHHcCCHHH---HHhCCHHHHHhCC
Confidence 5778888775 55555554441 11122233455542 44444332211111 2346788999999
Q ss_pred CCcHHHHHHHHHh
Q 011579 201 GIGNYTAGAIASI 213 (482)
Q Consensus 201 GIG~~TA~~il~f 213 (482)
|||.++|..|..+
T Consensus 564 Gi~~~~A~~I~~~ 576 (577)
T PRK14668 564 GVGEKTAETIRER 576 (577)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999988643
No 209
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=38.97 E-value=19 Score=34.45 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=29.7
Q ss_pred hhhhhcCCCCcHHHHHHHHHh-hcCCeeeeecCchhhhHHhhhccc
Q 011579 193 VSDLRKVPGIGNYTAGAIASI-AFKEVVPVVDGNVIRVLARLKAIS 237 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~f-a~~~p~~~vD~~v~Rvl~Rl~~~~ 237 (482)
...|.++.||||++|=+||+. ..+.-.-++..+=...+.++-++.
T Consensus 72 F~~Li~V~GIGpK~Al~iLs~~~~~el~~aI~~~D~~~L~kvpGIG 117 (195)
T PRK14604 72 FELLIGVSGVGPKAALNLLSSGTPDELQLAIAGGDVARLARVPGIG 117 (195)
T ss_pred HHHHhCcCCcCHHHHHHHHcCCCHHHHHHHHHhCCHHHHhhCCCCC
Confidence 467999999999999999984 333323334444445556665553
No 210
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=36.73 E-value=65 Score=25.42 Aligned_cols=41 Identities=34% Similarity=0.637 Sum_probs=32.9
Q ss_pred cCHHHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhc
Q 011579 75 FSEKEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQT 129 (482)
Q Consensus 75 ~~~~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt 129 (482)
|+++.+..+...|++.|+.+ |.- .+.|-|.+|+-+|+..|-
T Consensus 23 ~~~~~v~~vl~~LL~lY~~n-----W~l---------IEed~Y~~L~dai~e~~e 63 (65)
T PF10440_consen 23 FSKKQVRPVLKNLLKLYDGN-----WEL---------IEEDNYRVLADAIFEEQE 63 (65)
T ss_pred CCHHHHHHHHHHHHHHHcCC-----chh---------hhcccHHHHHHHHHHHhh
Confidence 67888999999999999755 654 346789999999987663
No 211
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=35.90 E-value=22 Score=34.22 Aligned_cols=44 Identities=27% Similarity=0.302 Sum_probs=29.2
Q ss_pred hhhhhcCCCCcHHHHHHHHHh-hcCCeeeeecCchhhhHHhhhcc
Q 011579 193 VSDLRKVPGIGNYTAGAIASI-AFKEVVPVVDGNVIRVLARLKAI 236 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~f-a~~~p~~~vD~~v~Rvl~Rl~~~ 236 (482)
...|+++.||||++|=+||+- ..+.-.-++++.=...+.|+=++
T Consensus 72 F~~LisVnGIGpK~ALaiLs~~~~~~l~~aI~~~d~~~L~k~PGI 116 (201)
T COG0632 72 FRLLISVNGIGPKLALAILSNLDPEELAQAIANEDVKALSKIPGI 116 (201)
T ss_pred HHHHHccCCccHHHHHHHHcCCCHHHHHHHHHhcChHhhhcCCCC
Confidence 467999999999999999975 33332333444444555565544
No 212
>PF00570 HRDC: HRDC domain Bloom syndrome. Werner syndrome.; InterPro: IPR002121 The HRDC (Helicase and RNase D C-terminal) domain has a putative role in nucleic acid binding. Mutations in the HRDC domain associated with the human BLM gene result in Bloom Syndrome (BS), an autosomal recessive disorder characterised by proportionate pre- and postnatal growth deficiency; sun-sensitive, telangiectatic, hypo- and hyperpigmented skin; predisposition to malignancy; and chromosomal instability [].; GO: 0003676 nucleic acid binding, 0005622 intracellular; PDB: 3SAG_B 3SAH_B 2CPR_A 3SAF_B 3CYM_A 1WUD_A 2HBK_A 2HBJ_A 2HBM_A 2HBL_A ....
Probab=34.66 E-value=39 Score=25.86 Aligned_cols=31 Identities=32% Similarity=0.582 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHH
Q 011579 171 RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAG 208 (482)
Q Consensus 171 RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~ 208 (482)
.-..|.++|+. .|.+.++|.+++|+|++-+.
T Consensus 28 ~~~~L~~ia~~-------~P~s~~~L~~i~g~~~~~~~ 58 (68)
T PF00570_consen 28 SDEALLEIAKR-------LPTSIEELLQIPGMGKRKVR 58 (68)
T ss_dssp -HHHHHHHHHH---------SSHHHHHTSTTCGHHHHH
T ss_pred CHHHHHHHHHh-------CCCCHHHHHHccCCCHHHHH
Confidence 34556666653 59999999999999998765
No 213
>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals. The alpha subunit (RpoA) initiates RNAP assembly by dimerising to form a platform on which the beta subunits can interact. The alpha subunit consists of a N-terminal domain (NTD) and a C-terminal domain (CTD), connected by a short linker. The NTD is essential for RNAP assembly, while the CTD is necessary for transcription regulation, interacting with transcription factors and promoter upstream elements. In Escherichia coli, the catabolite activator protein (CAP or CRP) was shown to exert its effect through its interactions with the CTD, where CAP binding to CTD promotes RNAP binding to promoter DNA, thereby stimulating transcription initiation at class I CAP-dependent promoters. At class II CAP-dependent promoters, the interaction of CAP with CTD is one of multiple interactions involved in activation []. The CTD has a compact structure of four helices and two long arms enclosing its hydrophobic core, making its folding topology distinct from most other binding proteins. The upstream promoter element-binding site is formed from helices 1 and 4 [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3N97_B 1XS9_D 3K4G_A 3N4M_B 1COO_A 1LB2_E 3IYD_A 1Z3E_B 3GFK_B 3IHQ_B ....
Probab=34.53 E-value=27 Score=27.34 Aligned_cols=47 Identities=26% Similarity=0.240 Sum_probs=29.4
Q ss_pred HhccCcHHHHHHHHHHHHHH-HHcCCCCCCchhhhhcCCCCcHHHHHHHH
Q 011579 163 WAGLGYYRRARFLLEGAKMI-VAEGDGFPNTVSDLRKVPGIGNYTAGAIA 211 (482)
Q Consensus 163 i~~lG~~~RA~~L~~~a~~i-~~~~g~~p~~~~~L~~lpGIG~~TA~~il 211 (482)
|..+|++.||.+...-+..- +.+ -+--+.++|.+++|+|+++.+-|.
T Consensus 14 I~~L~LS~Ra~n~L~~~~I~tv~d--L~~~s~~~L~~i~n~G~ksl~EI~ 61 (66)
T PF03118_consen 14 IEDLGLSVRAYNCLKRAGIHTVGD--LVKYSEEDLLKIKNFGKKSLEEIK 61 (66)
T ss_dssp GGGSTSBHHHHHHHHCTT--BHHH--HHCS-HHHHHTSTTSHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHhCCcCHHH--HHhCCHHHHHhCCCCCHhHHHHHH
Confidence 34578888887765544210 000 012356899999999999988764
No 214
>KOG3835 consensus Transcriptional corepressor NAB1 [Transcription]
Probab=33.18 E-value=87 Score=33.01 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhC-CCHHHHHhCCHHHHHHHHhccCcHH---HHHHHHHHHHHHHHcCC
Q 011579 131 VQTVIDYYNRWMTKW-PTIHHLAKASLEEVNEMWAGLGYYR---RARFLLEGAKMIVAEGD 187 (482)
Q Consensus 131 ~~~v~~~~~~l~~~~-pt~~~La~a~~eel~~~i~~lG~~~---RA~~L~~~a~~i~~~~g 187 (482)
-++...||+.|++.- .++++|.+|.++|..+++.-+|+-. -.|+++++.+....+.|
T Consensus 20 kANLlsYyd~FIqQGGDDvqQlceagEeEFLEIMaLVGMa~KPLHVRRlQkALrew~tnpg 80 (495)
T KOG3835|consen 20 KANLLSYYDVFIQQGGDDVQQLCEAGEEEFLEIMALVGMAPKPLHVRRLQKALREWSTNPG 80 (495)
T ss_pred HhhHHHHHHHHHHhcchHHHHHHHhhHHHHHHHHHHhccCCcchhHHHHHHHHHHHhcCcc
Confidence 355677999999764 5899999999999999999999976 47777777766665433
No 215
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=32.10 E-value=31 Score=35.33 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.0
Q ss_pred CchhhhhcCCCCcHHHHHHHHH
Q 011579 191 NTVSDLRKVPGIGNYTAGAIAS 212 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~ 212 (482)
..+++|+.+||||.++|.-|++
T Consensus 327 A~~~~llRVPGiG~ksa~rIv~ 348 (404)
T COG4277 327 APYKELLRVPGIGVKSARRIVM 348 (404)
T ss_pred cCHHHhcccCCCChHHHHHHHH
Confidence 4578999999999999987765
No 216
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=30.62 E-value=73 Score=35.82 Aligned_cols=77 Identities=27% Similarity=0.286 Sum_probs=42.6
Q ss_pred HHhhhccHHH---HHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCC
Q 011579 124 VMLQQTRVQT---VIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVP 200 (482)
Q Consensus 124 Il~Qqt~~~~---v~~~~~~l~~~~pt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~lp 200 (482)
-++|+.++++ |+.+.+++..+- +.... ...|.++|-. +++.|.+.-.-+.+ -...+.++|.++|
T Consensus 515 ~llq~irDEaHRFAi~~hR~~R~k~-----~~~s~----L~~IpGIG~k-~~k~Ll~~FgS~~~---i~~As~eeL~~v~ 581 (598)
T PRK00558 515 YLLQRIRDEAHRFAITFHRKKRSKA-----RLTSA----LDDIPGIGPK-RRKALLKHFGSLKA---IKEASVEELAKVP 581 (598)
T ss_pred HHHHHHHHHhhhhhhhhhccccccc-----hhhhh----HhhCCCcCHH-HHHHHHHHcCCHHH---HHhCCHHHHhhcC
Confidence 5788888876 444444433321 11111 1234566653 33333322111111 1235678999999
Q ss_pred CCcHHHHHHHHHh
Q 011579 201 GIGNYTAGAIASI 213 (482)
Q Consensus 201 GIG~~TA~~il~f 213 (482)
|||+++|..|..+
T Consensus 582 Gig~~~A~~I~~~ 594 (598)
T PRK00558 582 GISKKLAEAIYEA 594 (598)
T ss_pred CcCHHHHHHHHHH
Confidence 9999999999765
No 217
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=30.57 E-value=84 Score=35.87 Aligned_cols=83 Identities=24% Similarity=0.175 Sum_probs=0.0
Q ss_pred HhhhccHHH---HHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHH--HHHHHcCCCCCCchhhhhcC
Q 011579 125 MLQQTRVQT---VIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGA--KMIVAEGDGFPNTVSDLRKV 199 (482)
Q Consensus 125 l~Qqt~~~~---v~~~~~~l~~~~pt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a--~~i~~~~g~~p~~~~~L~~l 199 (482)
|+|+.++++ |+.+.+++..+ ....-..+-|.|+|--+|.+.|..+. +.|.+ .+.++|.++
T Consensus 581 lLq~iRDEaHRFAIt~hR~~R~k---------~~~~s~L~~IpGiG~kr~~~LL~~FgS~~~i~~------As~eel~~v 645 (691)
T PRK14672 581 MLQRIRDEAHRFAITRNRHLRTK---------KELVLSFERLPHVGKVRAHRLLAHFGSFRSLQS------ATPQDIATA 645 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh---------hhcccccccCCCCCHHHHHHHHHHhcCHHHHHh------CCHHHHHhC
Q ss_pred CCCcHHHHHHHHHhhcCCeeeee
Q 011579 200 PGIGNYTAGAIASIAFKEVVPVV 222 (482)
Q Consensus 200 pGIG~~TA~~il~fa~~~p~~~v 222 (482)
||||..+|..|+--+..-...+|
T Consensus 646 ~gi~~~~A~~i~~~~~~~~~~~~ 668 (691)
T PRK14672 646 IHIPLTQAHTILHAATRSTTAPV 668 (691)
T ss_pred CCCCHHHHHHHHHHhhcccccch
No 218
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=30.42 E-value=93 Score=31.31 Aligned_cols=45 Identities=20% Similarity=0.176 Sum_probs=34.1
Q ss_pred hccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHH
Q 011579 164 AGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIA 211 (482)
Q Consensus 164 ~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il 211 (482)
...|+.+-|.++.++++.|..+ +..+...|.+|||||+..+..+-
T Consensus 124 ~~~~~~~~~~~~l~L~q~i~q~---~w~~~~~L~Qlp~i~~~~~~~l~ 168 (312)
T smart00611 124 LERGWLSTALNALNLSQMIIQA---LWPTDSPLLQLPHLPEEILKRLE 168 (312)
T ss_pred HhcchHHHHHHHHHHHHHHHHh---hCCCCCccccCCCCCHHHHHHHH
Confidence 3467777799999999999874 22234569999999998777664
No 219
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=30.35 E-value=3.5e+02 Score=28.25 Aligned_cols=91 Identities=12% Similarity=0.137 Sum_probs=58.6
Q ss_pred HHHHH-hCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHc-----------------------------CC
Q 011579 139 NRWMT-KWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAE-----------------------------GD 187 (482)
Q Consensus 139 ~~l~~-~~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~-----------------------------~g 187 (482)
.+|.+ .|-|.++|+.++..+|.+. .|++. +|..|++.|+.++.. +|
T Consensus 45 ~kL~~~g~~tv~~~~~~~~~~L~~~---~g~s~~~~~ki~~~a~~~~~~~~~ta~~~~~~~~~~~~isTG~~~LD~lLgG 121 (344)
T PLN03187 45 KKLQDAGIYTCNGLMMHTKKNLTGI---KGLSEAKVDKICEAAEKLLNQGFITGSDALLKRKSVVRITTGSQALDELLGG 121 (344)
T ss_pred HHHHHcCCCcHHHHHhCCHHHHHHh---cCCCHHHHHHHHHHHHHhhcccCCcHHHHHhhhccCceecCCcHhHHhhcCC
Confidence 34554 4789999999999998753 66666 888888777666532 11
Q ss_pred CCC-CchhhhhcCCCCcHHHHHHHHHhh---------cCCeeeeecC----chhhhHHh
Q 011579 188 GFP-NTVSDLRKVPGIGNYTAGAIASIA---------FKEVVPVVDG----NVIRVLAR 232 (482)
Q Consensus 188 ~~p-~~~~~L~~lpGIG~~TA~~il~fa---------~~~p~~~vD~----~v~Rvl~R 232 (482)
.+| ...-++..-||.|.-+-..-++.. .+..++.+|+ ...|+...
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~i 180 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPI 180 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHH
Confidence 122 234567778999998766544331 1245788898 34554443
No 220
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.24 E-value=87 Score=27.73 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=47.3
Q ss_pred CCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhhhhc
Q 011579 201 GIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVIC 277 (482)
Q Consensus 201 GIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC 277 (482)
|||.++.=+=.+--.|-.++++|.|-.++=.-+.++-.+..++ .-.+.+-+..+..-.-+.+++.+++++.+.+-
T Consensus 21 GiG~~~~VA~~L~e~g~dv~atDI~~~~a~~g~~~v~DDitnP--~~~iY~~A~lIYSiRpppEl~~~ildva~aVg 95 (129)
T COG1255 21 GIGFFLDVAKRLAERGFDVLATDINEKTAPEGLRFVVDDITNP--NISIYEGADLIYSIRPPPELQSAILDVAKAVG 95 (129)
T ss_pred ccchHHHHHHHHHHcCCcEEEEecccccCcccceEEEccCCCc--cHHHhhCccceeecCCCHHHHHHHHHHHHhhC
Confidence 9999875555555556678889988775442232332333322 22455555555455557899999999999873
No 221
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=29.18 E-value=26 Score=31.28 Aligned_cols=74 Identities=15% Similarity=0.097 Sum_probs=38.8
Q ss_pred CCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhhhh
Q 011579 201 GIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVI 276 (482)
Q Consensus 201 GIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~i 276 (482)
|||.++--+-.+.-.|..+.++|.|-..+-..+-.+..+..++. -.+.+-+..+..-.-|.++|..|+++++.+
T Consensus 21 GiG~~~~vA~~L~~~G~dV~~tDi~~~~a~~g~~~v~DDif~P~--l~iY~~a~lIYSiRPP~El~~~il~lA~~v 94 (127)
T PF03686_consen 21 GIGFNPEVAKKLKERGFDVIATDINPRKAPEGVNFVVDDIFNPN--LEIYEGADLIYSIRPPPELQPPILELAKKV 94 (127)
T ss_dssp T-TT--HHHHHHHHHS-EEEEE-SS-S----STTEE---SSS----HHHHTTEEEEEEES--TTSHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHcCCcEEEEECcccccccCcceeeecccCCC--HHHhcCCcEEEEeCCChHHhHHHHHHHHHh
Confidence 99999877777777778899999999865544444433333221 234433333333334689999999999987
No 222
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=29.15 E-value=54 Score=36.54 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=19.9
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhh
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa 214 (482)
.+.++|.+++|||+.+|+.|..|-
T Consensus 517 a~~e~l~~i~gIG~~~a~si~~~f 540 (562)
T PRK08097 517 RSEQQWQQLPGIGEGRARQLIAFL 540 (562)
T ss_pred CCHHHHhcCCCchHHHHHHHHHHH
Confidence 356789999999999999998873
No 223
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=28.05 E-value=2.5e+02 Score=28.82 Aligned_cols=85 Identities=12% Similarity=0.144 Sum_probs=55.3
Q ss_pred HHHHH-hCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHc-----------------------------CC
Q 011579 139 NRWMT-KWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAE-----------------------------GD 187 (482)
Q Consensus 139 ~~l~~-~~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~-----------------------------~g 187 (482)
.+|.+ .|-|.++++.++..+|.+. .|++. +|..|++.|...... +|
T Consensus 15 ~~L~~~g~~t~~~~~~~~~~~L~~~---~gls~~~~~~i~~~~~~~~~~~~~ta~~~~~~~~~~~~isTG~~~LD~lLgG 91 (313)
T TIGR02238 15 KKLKSAGICTVNGVIMTTRRALCKI---KGLSEAKVDKIKEAASKIINPGFITAFEISQKRKKVLKITTGSQALDGILGG 91 (313)
T ss_pred HHHHHcCCCcHHHHHhCCHHHHHHh---cCCCHHHHHHHHHHHHhhhcccCccHHHHHHhhccCceeCCCCHHHHHHhCC
Confidence 34554 4889999999999998654 68877 888888877665432 01
Q ss_pred CCC-CchhhhhcCCCCcHHHHHHHHHhh---------cCCeeeeecCch
Q 011579 188 GFP-NTVSDLRKVPGIGNYTAGAIASIA---------FKEVVPVVDGNV 226 (482)
Q Consensus 188 ~~p-~~~~~L~~lpGIG~~TA~~il~fa---------~~~p~~~vD~~v 226 (482)
.+| ...-++..=||.|.-+-..-++.. .+..++.+|+--
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 122 223456778999987765444431 234677788743
No 224
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=27.70 E-value=3.4e+02 Score=27.37 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=30.4
Q ss_pred HHHHHHh-CCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHH
Q 011579 138 YNRWMTK-WPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAK 180 (482)
Q Consensus 138 ~~~l~~~-~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~ 180 (482)
..+|.+. |-|.++|+.++.++|.+. .|+.. .|..|++.+.
T Consensus 12 ~~~L~~~Gi~ti~dl~~~~~~~L~~~---~g~~~~~a~~l~~~~~ 53 (310)
T TIGR02236 12 AEKLREAGYDTFEAIAVASPKELSEI---AGISEGTAAKIIQAAR 53 (310)
T ss_pred HHHHHHcCCCCHHHHHcCCHHHHHhc---cCCCHHHHHHHHHHHH
Confidence 3456666 899999999999998654 57755 7777777765
No 225
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=27.69 E-value=1.4e+02 Score=28.09 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=31.4
Q ss_pred CeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcC
Q 011579 345 GVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFN 391 (482)
Q Consensus 345 gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelg 391 (482)
-.||+-|-. --++-.|||.+++||+. .+.|.|.+.|.||
T Consensus 84 PHvLLLQig-----~tf~KLPGG~L~pGE~e---~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 84 PHVLLLQIG-----NTFFKLPGGRLRPGEDE---ADGLKRLLTESLG 122 (221)
T ss_pred CeEEEEeeC-----CEEEecCCCccCCCcch---hHHHHHHHHHHhc
Confidence 467777743 34688999999999886 6789999999998
No 226
>COG1491 Predicted RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=27.39 E-value=38 Score=32.17 Aligned_cols=42 Identities=26% Similarity=0.301 Sum_probs=28.9
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhhcc
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAI 236 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~~ 236 (482)
.-...|.-|||||.||+..||---=.+|+= -..=+-.|++.+
T Consensus 127 ~RLH~LELLpGiGkK~m~~ILeERkkkpFe----SFeDi~~Rv~~~ 168 (202)
T COG1491 127 LRLHQLELLPGIGKKTMWAILEERKKKPFE----SFEDIKERVKGL 168 (202)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHhcCCCc----CHHHHHHHhcCC
Confidence 446789999999999999999765555521 123345566554
No 227
>PRK14976 5'-3' exonuclease; Provisional
Probab=26.14 E-value=39 Score=34.17 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=14.7
Q ss_pred hhhcCCCCcHHHHHHHHH
Q 011579 195 DLRKVPGIGNYTAGAIAS 212 (482)
Q Consensus 195 ~L~~lpGIG~~TA~~il~ 212 (482)
.+-.+||||++||..++.
T Consensus 192 nipGVpGIG~KtA~~LL~ 209 (281)
T PRK14976 192 NIKGVKGIGPKTAIKLLN 209 (281)
T ss_pred CCCCCCcccHHHHHHHHH
Confidence 345699999999998874
No 228
>PRK00254 ski2-like helicase; Provisional
Probab=26.10 E-value=1e+02 Score=35.23 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=26.0
Q ss_pred CCCCchhhhhcCCCCcHHHHHHHHHhhcCCee
Q 011579 188 GFPNTVSDLRKVPGIGNYTAGAIASIAFKEVV 219 (482)
Q Consensus 188 ~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p~ 219 (482)
.+++..-.|.+|||||+.+|...+..+|+-..
T Consensus 639 g~~~~~~~L~~ipgig~~~~~~l~~~g~~s~~ 670 (720)
T PRK00254 639 GVREELLELMRLPMIGRKRARALYNAGFRSIE 670 (720)
T ss_pred CCCHHHhhhhcCCCCCHHHHHHHHHccCCCHH
Confidence 35666777889999999999999888887653
No 229
>COG1796 POL4 DNA polymerase IV (family X) [DNA replication, recombination, and repair]
Probab=25.98 E-value=1.2e+02 Score=31.41 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=43.4
Q ss_pred HHHHHHHhCC----CHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHH
Q 011579 137 YYNRWMTKWP----TIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIAS 212 (482)
Q Consensus 137 ~~~~l~~~~p----t~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~ 212 (482)
.+..|...|| +.-.+...++..+..+|.-+|+-.. ..|+++++ +|. +..|+|+|.+.+.-||-
T Consensus 80 ~le~lk~~~P~gl~~Ll~v~GlGpkKi~~Ly~elgi~~~-e~l~~a~~-----~~~-------~~~l~GfG~kse~~il~ 146 (326)
T COG1796 80 KLEALKKEVPEGLEPLLKVPGLGPKKIVSLYKELGIKDL-EELQEALE-----NGK-------IRGLRGFGKKSEAKILE 146 (326)
T ss_pred HHHHHHHhCCcchHHHhhCCCCCcHHHHHHHHHHCcccH-HHHHHHHH-----hCC-------ccccCCccchhHHHHHH
Confidence 5667788888 3444555678888888888887433 33333333 122 36799999999999885
Q ss_pred h
Q 011579 213 I 213 (482)
Q Consensus 213 f 213 (482)
.
T Consensus 147 ~ 147 (326)
T COG1796 147 N 147 (326)
T ss_pred H
Confidence 4
No 230
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=25.80 E-value=1.7e+02 Score=33.27 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=13.1
Q ss_pred chhhhhcCCCCcHHHHHHHHHh
Q 011579 192 TVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 192 ~~~~L~~lpGIG~~TA~~il~f 213 (482)
+.++|.+++|||+++|..|..|
T Consensus 528 s~eeL~~i~GIG~~~A~~I~~f 549 (652)
T TIGR00575 528 SLEELLSVEGVGPKVAESIVNF 549 (652)
T ss_pred CHHHHhcCCCcCHHHHHHHHHH
Confidence 4455666666666666666554
No 231
>PRK09482 flap endonuclease-like protein; Provisional
Probab=25.27 E-value=43 Score=33.49 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=15.5
Q ss_pred hhhhcCCCCcHHHHHHHHHh
Q 011579 194 SDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 194 ~~L~~lpGIG~~TA~~il~f 213 (482)
+.+-.+||||++||.-++.-
T Consensus 182 DnIpGVpGIG~KtA~~LL~~ 201 (256)
T PRK09482 182 SKIPGVAGIGPKSAAELLNQ 201 (256)
T ss_pred cCCCCCCCcChHHHHHHHHH
Confidence 33457899999999887753
No 232
>PRK00254 ski2-like helicase; Provisional
Probab=25.18 E-value=64 Score=36.96 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=20.4
Q ss_pred CchhhhhcCCCCcHHHHHHHHHh
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~f 213 (482)
.+.++|.+++|||+++|..|..+
T Consensus 675 a~~~el~~~~gi~~~~a~~i~~~ 697 (720)
T PRK00254 675 AKPSELLKVEGIGAKIVEGIFKH 697 (720)
T ss_pred CCHHHHhcCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 233
>TIGR01954 nusA_Cterm_rpt transcription termination factor NusA, C-terminal duplication. NusA is a bacterial transcription termination factor. It is named for its interaction with phage lambda protein N, as part of the N utilization substance. Some members of the NusA family have a long C-terminal extension. This model represents an acidic 50-residue region found in two copies toward the C-terminus of most Proteobacterial NusA proteins, spaced about 26 residues apart. Analogous C-terminal extensions in some other bacterial lineages lack apparent homology but appear similarly acidic.
Probab=24.94 E-value=1.2e+02 Score=21.62 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=27.8
Q ss_pred hCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHH
Q 011579 144 KWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKM 181 (482)
Q Consensus 144 ~~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~ 181 (482)
.|-|.++++.++.+++..+ -|+.. +|..|+..|+.
T Consensus 13 G~~s~e~la~~~~~eL~~i---~g~~~e~a~~ii~~a~~ 48 (50)
T TIGR01954 13 GFTTVEDLAYVPIDELLSI---EGFDEETAKELINRARN 48 (50)
T ss_pred CCCCHHHHHccCHHHHhcC---CCCCHHHHHHHHHHHHH
Confidence 5789999999999998653 56766 88888877763
No 234
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=24.77 E-value=45 Score=32.81 Aligned_cols=19 Identities=37% Similarity=0.653 Sum_probs=14.8
Q ss_pred hhhhcCCCCcHHHHHHHHH
Q 011579 194 SDLRKVPGIGNYTAGAIAS 212 (482)
Q Consensus 194 ~~L~~lpGIG~~TA~~il~ 212 (482)
+.+-.+||||++||.-++.
T Consensus 183 DnipGv~GiG~ktA~~Ll~ 201 (240)
T cd00008 183 DNIPGVPGIGEKTAAKLLK 201 (240)
T ss_pred cCCCCCCccCHHHHHHHHH
Confidence 3446789999999977764
No 235
>PF01367 5_3_exonuc: 5'-3' exonuclease, C-terminal SAM fold; InterPro: IPR020045 This entry represents the C-terminal domain of 5' to 3' exonucleases. The 5'-3' exonucleases are conserved in organisms as diverse as bacteriophage and mammals. It adopts a SAM fold consisting of 4-5 helices packed into a bundle of two orthogonally packed alpha-hairpins. This domain is involved in interactions with DNA and proteins. 5' to 3' exonucleases that contain this domain include: Bacteriophage T4 RNase H, which has sequence similarity to the RAD2 family of eukaryotic proteins []. 5' to 3' exonuclease domain of DNA polymerase Taq, which is homologous to Escherichia coli DNA polymerase I (pol I) [, ]. Bacteriophage T5 5'-exonuclease, which are structure-specific endonucleases []. Flap endonuclease-1 (Fen-1 nuclease), a structure specific nuclease that is an essential enzyme for eukaryotic DNA replication and repair []. ; GO: 0003677 DNA binding, 0003824 catalytic activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B.
Probab=24.51 E-value=27 Score=29.87 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=13.8
Q ss_pred hhhhhcCCCCcHHHHHHHHHh
Q 011579 193 VSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~f 213 (482)
-+.+-.+||||+|||..++.-
T Consensus 17 sDNIPGV~GIG~KtA~~LL~~ 37 (101)
T PF01367_consen 17 SDNIPGVPGIGPKTAAKLLQE 37 (101)
T ss_dssp CCTB---TTSTCHCCCCCHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHH
Confidence 345567999999999877754
No 236
>PRK07758 hypothetical protein; Provisional
Probab=24.51 E-value=49 Score=28.04 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=15.7
Q ss_pred chhhhhcCCCCcHHHHHHHH
Q 011579 192 TVSDLRKVPGIGNYTAGAIA 211 (482)
Q Consensus 192 ~~~~L~~lpGIG~~TA~~il 211 (482)
+.++|++|+|+|+++.+-|-
T Consensus 65 te~ELl~iknlGkKSL~EIk 84 (95)
T PRK07758 65 SEKEILKLHGMGPASLPKLR 84 (95)
T ss_pred CHHHHHHccCCCHHHHHHHH
Confidence 56778888999998877653
No 237
>CHL00137 rps13 ribosomal protein S13; Validated
Probab=24.49 E-value=47 Score=29.46 Aligned_cols=21 Identities=29% Similarity=0.218 Sum_probs=18.3
Q ss_pred hhhhhcCCCCcHHHHHHHHHh
Q 011579 193 VSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~f 213 (482)
.-.|..+.|||+.+|..|+..
T Consensus 16 ~~aLt~i~GIG~~~A~~ic~~ 36 (122)
T CHL00137 16 EYALTYIYGIGLTSAKEILEK 36 (122)
T ss_pred eeeecccccccHHHHHHHHHH
Confidence 457899999999999999875
No 238
>COG0258 Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair]
Probab=24.37 E-value=1.2e+02 Score=31.03 Aligned_cols=48 Identities=33% Similarity=0.428 Sum_probs=28.6
Q ss_pred CCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHH
Q 011579 154 ASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIAS 212 (482)
Q Consensus 154 a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~ 212 (482)
.+.+++.+.+++++-. .|++++..+=+....+|. +||||++||--++.
T Consensus 169 ~~~~~~~e~~~g~~p~----qliD~~~L~Gd~sDnipG-------V~GIG~ktA~~Ll~ 216 (310)
T COG0258 169 LDLEEVEEKFKGLTPE----QLIDLKALVGDSSDNIPG-------VKGIGPKTALKLLQ 216 (310)
T ss_pred CCHHHHHHHHcCCCHH----HHHHHHHHhCCcccCCCC-------CCCcCHHHHHHHHH
Confidence 4556666665565552 566655433222223443 99999999977663
No 239
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=24.12 E-value=1.1e+02 Score=34.15 Aligned_cols=76 Identities=13% Similarity=0.201 Sum_probs=0.0
Q ss_pred HhhhccHHH---HHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHH--HHHHHcCCCCCCchhhhhcC
Q 011579 125 MLQQTRVQT---VIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGA--KMIVAEGDGFPNTVSDLRKV 199 (482)
Q Consensus 125 l~Qqt~~~~---v~~~~~~l~~~~pt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a--~~i~~~~g~~p~~~~~L~~l 199 (482)
++|+.++++ |+.+.+++..+ .......+-|.|+|--+|.+.|..+. +.|.+ .+.++|.++
T Consensus 487 lLq~irDEaHRFAi~~hR~~r~k---------~~~~S~Ld~I~GiG~kr~~~Ll~~Fgs~~~ik~------As~eeL~~v 551 (567)
T PRK14667 487 VFGLIRDEAHRFALSYNRKLREK---------EGLKDILDKIKGIGEVKKEIIYRNFKTLYDFLK------ADDEELKKL 551 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc---------ccccCccccCCCCCHHHHHHHHHHhCCHHHHHh------CCHHHHHHc
Q ss_pred CCCcHHHHHHHHHhhcC
Q 011579 200 PGIGNYTAGAIASIAFK 216 (482)
Q Consensus 200 pGIG~~TA~~il~fa~~ 216 (482)
|||..+|..|..+--|
T Consensus 552 -gi~~~~A~~I~~~l~~ 567 (567)
T PRK14667 552 -GIPPSVKQEVKKYLSG 567 (567)
T ss_pred -CCCHHHHHHHHHHhcC
No 240
>PF14443 DBC1: DBC1
Probab=24.09 E-value=3.7e+02 Score=24.02 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=30.9
Q ss_pred eEEEEecCC-CCCCCcccccCcccc-CCCCChhhHHHHHHHHHHhhcCCCCC
Q 011579 346 VFILVKRRD-EGLLAGLWEFPSIIL-DGETDITTRREAAECFLKKSFNLDPR 395 (482)
Q Consensus 346 kvLl~KRp~-~gllaGLWEFPggkv-e~~e~~~~~~~AL~rel~Eelgi~~~ 395 (482)
+||+.+|-. -.-.||-|. |...- ++..++...-...+|..++-.|++..
T Consensus 9 kFlv~~k~ke~~aiGG~Ws-psLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS 59 (126)
T PF14443_consen 9 KFLVGKKDKEIMAIGGPWS-PSLDGGDPSSDPSVLIRTAIRTCKALTGIDLS 59 (126)
T ss_pred eeEEeecCceEEecCCcCC-cccCCCCCCCCcHHHHHHHHHHHHHHhccchh
Confidence 566666643 245789999 66322 23333455556667888888898875
No 241
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=23.99 E-value=1e+02 Score=23.76 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=25.6
Q ss_pred HHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHH
Q 011579 138 YNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGA 179 (482)
Q Consensus 138 ~~~l~~~~pt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a 179 (482)
-..|.+.|+|.+.|.+|+.++|.. +.++|- ..|+.|.+.-
T Consensus 16 ak~L~~~f~sl~~l~~a~~e~L~~-i~gIG~-~~A~si~~ff 55 (64)
T PF12826_consen 16 AKLLAKHFGSLEALMNASVEELSA-IPGIGP-KIAQSIYEFF 55 (64)
T ss_dssp HHHHHHCCSCHHHHCC--HHHHCT-STT--H-HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHcCHHHHhc-cCCcCH-HHHHHHHHHH
Confidence 346778899999999999999853 344443 1577776544
No 242
>smart00475 53EXOc 5'-3' exonuclease.
Probab=23.83 E-value=48 Score=33.10 Aligned_cols=17 Identities=41% Similarity=0.677 Sum_probs=14.2
Q ss_pred hhcCCCCcHHHHHHHHH
Q 011579 196 LRKVPGIGNYTAGAIAS 212 (482)
Q Consensus 196 L~~lpGIG~~TA~~il~ 212 (482)
+-.+||||++||.-++.
T Consensus 188 ipGV~GIG~KtA~~Ll~ 204 (259)
T smart00475 188 IPGVPGIGEKTAAKLLK 204 (259)
T ss_pred CCCCCCCCHHHHHHHHH
Confidence 45789999999998774
No 243
>PRK14973 DNA topoisomerase I; Provisional
Probab=23.78 E-value=4.3e+02 Score=31.58 Aligned_cols=61 Identities=21% Similarity=0.176 Sum_probs=42.6
Q ss_pred CCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHhhcCCe
Q 011579 145 WPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEV 218 (482)
Q Consensus 145 ~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p 218 (482)
.-+.++|+.|++..| +..|++. +++.+.+.|+.++.+ .|++++||-.-+|+-+..-+|..+
T Consensus 765 ~~~~~~~~~~~~~~~----~~~~~sE~~~~~~~~~a~~~~~~---------~~~~~~gv~~~~~~~~~~~G~~~~ 826 (936)
T PRK14973 765 INDIAALARADPADL----KKAGLSEAEAASLLAEAKSLCNI---------SRLKEIGVPAVSLKKYQEAGFDTP 826 (936)
T ss_pred cchHHHHhhCCHHHH----HHcCCCHHHHHHHHHHHHHHHHH---------HhhcccCCCHHHHHHHHHhcCCCH
Confidence 458999999999886 6789998 999999999766542 245555555555555554444443
No 244
>PF04919 DUF655: Protein of unknown function (DUF655); InterPro: IPR007003 This family includes several uncharacterised archaeal proteins.; PDB: 2I5H_A.
Probab=23.73 E-value=56 Score=30.98 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=19.8
Q ss_pred CCCchhhhhcCCCCcHHHHHHHHHhhcCCe
Q 011579 189 FPNTVSDLRKVPGIGNYTAGAIASIAFKEV 218 (482)
Q Consensus 189 ~p~~~~~L~~lpGIG~~TA~~il~fa~~~p 218 (482)
+-.-...|.-|||||.+|...||----..|
T Consensus 111 It~RlH~LeLLPGIGKK~m~~ILeERkkkp 140 (181)
T PF04919_consen 111 ITLRLHSLELLPGIGKKTMWKILEERKKKP 140 (181)
T ss_dssp B-SSSBGGGGSTT--HHHHHHHHHHHHHS-
T ss_pred ChHHHHHHhhcccccHHHHHHHHHHHccCC
Confidence 334567888999999999999996543334
No 245
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=23.47 E-value=4e+02 Score=27.07 Aligned_cols=86 Identities=20% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHh-CCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHH---H-------------------------HHc
Q 011579 136 DYYNRWMTK-WPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKM---I-------------------------VAE 185 (482)
Q Consensus 136 ~~~~~l~~~-~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~---i-------------------------~~~ 185 (482)
....+|.+. +-|.++|+.+++++|.+. .|+.. +|..|++.++. . .+.
T Consensus 17 ~~a~~L~~~Gi~t~~dl~~~~~~~L~~~---~g~~~~~a~~l~~~a~~~~~~~~~~t~~~l~~~~ks~~~~~Tg~~~lD~ 93 (317)
T PRK04301 17 ATAEKLREAGYDTVEAIAVASPKELSEA---AGIGESTAAKIIEAAREAADIGGFETALEVLERRKNVGKITTGSKELDE 93 (317)
T ss_pred HHHHHHHHcCCCCHHHHHcCCHHHHHHh---cCCCHHHHHHHHHHHHHhhccccCccHHHHHHhhccCCccCCCCHHHHH
Q ss_pred --CCCCCC-chhhhhcCCCCcHHHHHHHHHhh---------cCCeeeeecC
Q 011579 186 --GDGFPN-TVSDLRKVPGIGNYTAGAIASIA---------FKEVVPVVDG 224 (482)
Q Consensus 186 --~g~~p~-~~~~L~~lpGIG~~TA~~il~fa---------~~~p~~~vD~ 224 (482)
+|.+|. ..-++..-||.|.-+-..-++.. .+..++.||+
T Consensus 94 ~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~t 144 (317)
T PRK04301 94 LLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDT 144 (317)
T ss_pred HhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeC
No 246
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=23.02 E-value=2.5e+02 Score=29.76 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=40.8
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHhCC-CHHHHHhCCHHHHHH
Q 011579 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWP-TIHHLAKASLEEVNE 161 (482)
Q Consensus 114 ~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~p-t~~~La~a~~eel~~ 161 (482)
.=|.+.++++++.--...+.|...|.+|+++|. ..+-|.+++.+||.+
T Consensus 296 ~iPL~ei~~~~~~~~~~~k~v~~~~~~l~~~fG~E~~iL~~~~~eel~~ 344 (374)
T TIGR00375 296 LIPLAEVIGVGPKKGIFTKAVQSLWEKLKKAFGTEIAVLHEAAEEDLAR 344 (374)
T ss_pred eCCHHHHHhhhcCCCCccHHHHHHHHHHHHHhccHHHHHhcCCHHHHHH
Confidence 448899999988877788999999999999986 577789999999853
No 247
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=22.93 E-value=1.4e+02 Score=34.29 Aligned_cols=75 Identities=27% Similarity=0.199 Sum_probs=0.0
Q ss_pred HhhhccHHH---HHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhhhcCC
Q 011579 125 MLQQTRVQT---VIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDLRKVP 200 (482)
Q Consensus 125 l~Qqt~~~~---v~~~~~~l~~~~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~~lp 200 (482)
++|+.++++ |+.+.++...+--.-..|.. --|... |++.|++--.-+.+ -...+.++|.+++
T Consensus 610 ~Lq~iRDEaHRfAi~~hR~~r~k~~~~s~L~~-----------IPGIGpkr~k~LL~~FGSle~---I~~AS~eELa~V~ 675 (694)
T PRK14666 610 FLQHVRDTVHDYAIGRHRRARAGAALTGELQR-----------VEGIGPATARLLWERFGSLQA---MAAAGEEGLAAVP 675 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHhh-----------CCCCCHHHHHHHHHHhCCHHH---HHhcCHHHHHhcC
Q ss_pred CCcHHHHHHHHHh
Q 011579 201 GIGNYTAGAIASI 213 (482)
Q Consensus 201 GIG~~TA~~il~f 213 (482)
|||+++|..|+.+
T Consensus 676 Gig~k~Ae~I~~~ 688 (694)
T PRK14666 676 GIGPARAAALHEH 688 (694)
T ss_pred CcCHHHHHHHHHH
No 248
>PRK01172 ski2-like helicase; Provisional
Probab=22.11 E-value=4.5e+02 Score=29.73 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=53.7
Q ss_pred HHHHHhCC--CHHHHHhCCHHHHHHHHhccCcHHHH-HH----H-HHHHHH---HHHc-CCCCCCchhhhhcCCCCcHHH
Q 011579 139 NRWMTKWP--TIHHLAKASLEEVNEMWAGLGYYRRA-RF----L-LEGAKM---IVAE-GDGFPNTVSDLRKVPGIGNYT 206 (482)
Q Consensus 139 ~~l~~~~p--t~~~La~a~~eel~~~i~~lG~~~RA-~~----L-~~~a~~---i~~~-~g~~p~~~~~L~~lpGIG~~T 206 (482)
..++.+.| ..+.........|..++.+.|+...| .. + .++++. +..+ .-.+++..-.|++|||||+..
T Consensus 545 ~~~~~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~rl~~gv~~~~~~L~~ip~~~~~~ 624 (674)
T PRK01172 545 RGWISEASMQKITDTYGIAPGDVQARASSADWISYSLARLSSIYKPEMRRKLEILNIRIKEGIREDLIDLVLIPKVGRVR 624 (674)
T ss_pred HHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHhhcCCCCCCHHH
Confidence 33444433 34445566777777776666664311 11 1 222222 2222 234677788899999999999
Q ss_pred HHHHHHhhcCCeeeeecCchhhh
Q 011579 207 AGAIASIAFKEVVPVVDGNVIRV 229 (482)
Q Consensus 207 A~~il~fa~~~p~~~vD~~v~Rv 229 (482)
|......++.-+.=+.+......
T Consensus 625 a~~l~~~g~~~~~di~~~~~~~~ 647 (674)
T PRK01172 625 ARRLYDAGFKTVDDIARSSPERI 647 (674)
T ss_pred HHHHHHcCCCCHHHHHhCCHHHH
Confidence 99888888776644445444443
No 249
>PRK05179 rpsM 30S ribosomal protein S13; Validated
Probab=21.90 E-value=56 Score=28.93 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=18.3
Q ss_pred hhhhhcCCCCcHHHHHHHHHh
Q 011579 193 VSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~f 213 (482)
.-.|..+.|||+.+|..|+..
T Consensus 16 ~~aL~~I~GIG~~~a~~i~~~ 36 (122)
T PRK05179 16 VIALTYIYGIGRTRAKEILAA 36 (122)
T ss_pred EeeecccccccHHHHHHHHHH
Confidence 357899999999999999865
No 250
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=21.47 E-value=3.8e+02 Score=22.09 Aligned_cols=53 Identities=28% Similarity=0.217 Sum_probs=31.0
Q ss_pred CHHHHHHHHhccCcHH-HHHHHHHHH----HHHHHcCCCCCCchhhhhc-CCCCcHHHHHHHHHh
Q 011579 155 SLEEVNEMWAGLGYYR-RARFLLEGA----KMIVAEGDGFPNTVSDLRK-VPGIGNYTAGAIASI 213 (482)
Q Consensus 155 ~~eel~~~i~~lG~~~-RA~~L~~~a----~~i~~~~g~~p~~~~~L~~-lpGIG~~TA~~il~f 213 (482)
+..++...+...|+.. .|..|.+.- -.++++ +.=.|+. ++|||-++||.|...
T Consensus 7 ~~~~~~~~L~~~gl~~~~a~kl~~~yg~~ai~~l~~------nPY~L~~~i~gi~F~~aD~iA~~ 65 (94)
T PF14490_consen 7 GLRELMAFLQEYGLSPKLAMKLYKKYGDDAIEILKE------NPYRLIEDIDGIGFKTADKIALK 65 (94)
T ss_dssp --HHHHHHHHHTT--HHHHHHHHHHH-TTHHHHHHH-------STCCCB-SSSSBHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHHHH------ChHHHHHHccCCCHHHHHHHHHH
Confidence 3456666778889976 666666542 112221 1113455 899999999999864
No 251
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional
Probab=20.92 E-value=4.4e+02 Score=28.34 Aligned_cols=17 Identities=24% Similarity=0.663 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011579 77 EKEVKKIRQSLLQWYDK 93 (482)
Q Consensus 77 ~~~~~~~~~~L~~wy~~ 93 (482)
++++..+...|.+||+.
T Consensus 152 dk~in~~~~RLrewY~~ 168 (414)
T PRK14552 152 DKTINLFSERLREWYSL 168 (414)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 36788899999999974
Done!