Query 011579
Match_columns 482
No_of_seqs 334 out of 2616
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 11:05:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011579.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011579hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fsp_A A/G-specific adenine gl 100.0 2.7E-77 9.2E-82 618.9 36.0 344 82-472 15-359 (369)
2 3n5n_X A/G-specific adenine DN 100.0 2E-55 6.9E-60 438.0 21.1 226 73-300 7-235 (287)
3 1kg2_A A/G-specific adenine gl 100.0 1.3E-52 4.5E-57 406.3 22.9 219 82-316 5-225 (225)
4 1kea_A Possible G-T mismatches 100.0 8.3E-51 2.8E-55 392.6 22.1 213 76-299 5-219 (221)
5 1orn_A Endonuclease III; DNA r 100.0 4.2E-47 1.4E-51 367.8 22.6 204 78-298 8-213 (226)
6 2abk_A Endonuclease III; DNA-r 100.0 4.4E-47 1.5E-51 364.2 18.2 203 77-297 3-207 (211)
7 1pu6_A 3-methyladenine DNA gly 100.0 1.2E-35 4E-40 286.1 14.7 182 81-275 5-212 (218)
8 4e9f_A Methyl-CPG-binding doma 100.0 6.7E-32 2.3E-36 247.7 14.2 132 99-237 15-149 (161)
9 3fhg_A Mjogg, N-glycosylase/DN 100.0 8.4E-30 2.9E-34 243.4 6.8 168 78-279 9-189 (207)
10 3fhf_A Mjogg, N-glycosylase/DN 99.9 1.1E-28 3.7E-33 236.2 8.3 145 114-279 42-196 (214)
11 4b21_A Probable DNA-3-methylad 99.9 4.3E-27 1.5E-31 228.2 16.2 154 85-258 38-212 (232)
12 2h56_A DNA-3-methyladenine gly 99.9 3.3E-27 1.1E-31 229.4 12.5 157 114-277 49-219 (233)
13 3n0u_A Probable N-glycosylase/ 99.9 1.2E-27 4E-32 229.9 6.2 143 79-238 19-174 (219)
14 2yg9_A DNA-3-methyladenine gly 99.9 1.1E-25 3.6E-30 217.6 12.5 141 114-268 59-212 (225)
15 3s6i_A DNA-3-methyladenine gly 99.9 3.4E-25 1.2E-29 214.4 16.0 147 115-274 49-215 (228)
16 3i0w_A 8-oxoguanine-DNA-glycos 99.9 3.8E-25 1.3E-29 221.4 12.6 152 114-275 113-287 (290)
17 2xhi_A N-glycosylase/DNA lyase 99.9 8.6E-24 3E-28 217.2 13.4 120 114-236 150-296 (360)
18 1x51_A A/G-specific adenine DN 99.9 5.8E-24 2E-28 191.9 9.7 139 307-472 4-147 (155)
19 1mpg_A ALKA, 3-methyladenine D 99.9 5.9E-23 2E-27 204.8 14.6 142 114-269 111-273 (282)
20 2jhn_A ALKA, 3-methyladenine D 99.9 2.5E-22 8.6E-27 201.5 12.9 145 114-268 116-282 (295)
21 3ees_A Probable pyrophosphohyd 99.9 4.3E-22 1.5E-26 177.6 10.5 145 307-479 2-151 (153)
22 3hhj_A Mutator MUTT protein; n 99.8 1.7E-19 5.9E-24 162.7 12.9 138 309-472 17-154 (158)
23 2rrk_A ORF135, CTP pyrophospho 99.8 2.9E-19 9.8E-24 157.1 10.6 124 320-471 7-130 (140)
24 3r03_A Nudix hydrolase; struct 99.8 4.8E-19 1.6E-23 156.6 11.8 118 342-473 17-134 (144)
25 1mut_A MUTT, nucleoside tripho 99.8 2.9E-19 1E-23 154.6 9.9 115 342-472 13-127 (129)
26 3gwy_A Putative CTP pyrophosph 99.8 8.9E-19 3.1E-23 154.9 9.4 115 343-473 15-131 (140)
27 3grn_A MUTT related protein; s 99.7 7.6E-18 2.6E-22 151.1 12.9 115 342-471 17-133 (153)
28 3exq_A Nudix family hydrolase; 99.7 2.7E-16 9.1E-21 142.8 11.5 112 345-473 23-136 (161)
29 3id9_A MUTT/nudix family prote 99.7 1.7E-16 5.9E-21 144.8 9.2 147 277-471 1-148 (171)
30 3oga_A Nucleoside triphosphata 99.7 5.2E-16 1.8E-20 140.8 12.3 115 342-471 36-162 (165)
31 3q93_A 7,8-dihydro-8-oxoguanin 99.6 5.6E-16 1.9E-20 143.2 10.7 115 342-473 33-149 (176)
32 2pbt_A AP4A hydrolase; nudix p 99.6 2.1E-15 7.1E-20 131.3 9.4 108 344-471 14-125 (134)
33 2fkb_A Putative nudix hydrolas 99.6 3E-15 1E-19 137.7 10.9 115 342-471 46-164 (180)
34 1vcd_A NDX1; nudix protein, di 99.6 3.1E-15 1.1E-19 129.0 9.6 110 342-471 11-120 (126)
35 2b06_A MUTT/nudix family prote 99.6 3.7E-15 1.3E-19 133.5 9.9 109 347-473 25-134 (155)
36 4dyw_A MUTT/nudix family prote 99.6 7.9E-15 2.7E-19 132.5 12.0 114 344-472 39-154 (157)
37 3i7u_A AP4A hydrolase; nudix p 99.5 9.4E-15 3.2E-19 129.2 9.0 109 342-470 12-124 (134)
38 3fk9_A Mutator MUTT protein; s 99.5 2.2E-14 7.4E-19 134.0 10.7 113 343-474 13-130 (188)
39 1rya_A GDP-mannose mannosyl hy 99.5 2E-14 6.7E-19 129.1 9.9 117 342-471 27-152 (160)
40 1nqz_A COA pyrophosphatase (MU 99.5 2.9E-15 1E-19 139.9 4.1 142 284-455 3-147 (194)
41 2azw_A MUTT/nudix family prote 99.5 1.1E-14 3.8E-19 128.8 6.4 108 344-471 30-143 (148)
42 1sjy_A MUTT/nudix family prote 99.5 3.5E-14 1.2E-18 127.3 8.9 107 342-461 22-133 (159)
43 2o1c_A DATP pyrophosphohydrola 99.5 2.3E-14 7.8E-19 126.7 6.4 114 344-473 21-147 (150)
44 2b0v_A Nudix hydrolase; struct 99.5 8E-14 2.7E-18 124.1 9.0 116 342-471 16-136 (153)
45 1ktg_A Diadenosine tetraphosph 99.5 5.2E-14 1.8E-18 123.2 7.5 114 344-471 17-131 (138)
46 3gg6_A Nudix motif 18, nucleos 99.5 1.9E-13 6.5E-18 122.5 10.3 114 342-470 29-142 (156)
47 3eds_A MUTT/nudix family prote 99.4 3.2E-13 1.1E-17 121.2 10.2 104 342-464 30-141 (153)
48 1q27_A Putative nudix hydrolas 99.4 4.3E-14 1.5E-18 128.9 4.3 116 342-471 43-163 (171)
49 3f6a_A Hydrolase, nudix family 99.4 8.8E-13 3E-17 118.8 11.3 110 344-471 16-147 (159)
50 1k2e_A Nudix homolog; nudix/MU 99.4 6.7E-13 2.3E-17 119.4 8.8 103 344-471 11-132 (156)
51 3cng_A Nudix hydrolase; struct 99.4 1.4E-12 4.9E-17 121.5 11.0 110 344-471 50-161 (189)
52 2pqv_A MUTT/nudix family prote 99.4 4.1E-13 1.4E-17 120.1 6.9 107 343-467 28-138 (154)
53 3e57_A Uncharacterized protein 99.4 1E-13 3.6E-18 132.2 2.9 116 342-470 76-202 (211)
54 2yyh_A MUTT domain, 8-OXO-DGTP 99.4 4.1E-12 1.4E-16 111.5 12.9 104 343-471 21-134 (139)
55 3o8s_A Nudix hydrolase, ADP-ri 99.4 1.1E-12 3.8E-17 124.1 9.4 108 344-471 80-192 (206)
56 3f13_A Putative nudix hydrolas 99.4 4.1E-12 1.4E-16 116.1 12.9 104 342-471 24-127 (163)
57 3son_A Hypothetical nudix hydr 99.3 1.6E-12 5.5E-17 115.5 8.7 118 342-472 17-138 (149)
58 3shd_A Phosphatase NUDJ; nudix 99.3 1.9E-12 6.6E-17 115.4 8.9 115 342-471 13-130 (153)
59 1hzt_A Isopentenyl diphosphate 99.3 3.7E-12 1.3E-16 118.4 7.7 115 342-471 41-169 (190)
60 3u53_A BIS(5'-nucleosyl)-tetra 99.3 2E-11 6.7E-16 109.7 10.5 113 342-470 21-137 (155)
61 1v8y_A ADP-ribose pyrophosphat 99.2 5.6E-12 1.9E-16 115.0 6.6 101 344-458 44-144 (170)
62 1f3y_A Diadenosine 5',5'''-P1, 99.2 2.2E-12 7.5E-17 115.8 3.8 116 342-471 23-161 (165)
63 3i9x_A MUTT/nudix family prote 99.2 4.9E-12 1.7E-16 117.4 6.0 116 344-471 45-168 (187)
64 2yvp_A NDX2, MUTT/nudix family 99.2 1.7E-12 5.9E-17 119.6 2.8 104 342-458 50-154 (182)
65 1vk6_A NADH pyrophosphatase; 1 99.2 3.5E-11 1.2E-15 118.9 11.4 106 342-465 148-253 (269)
66 2qjo_A Bifunctional NMN adenyl 99.2 1.6E-11 5.6E-16 123.8 9.1 117 343-472 212-338 (341)
67 3q1p_A Phosphohydrolase (MUTT/ 99.2 1.2E-11 4.1E-16 116.9 7.6 109 344-471 78-191 (205)
68 2qjt_B Nicotinamide-nucleotide 99.2 2.5E-11 8.7E-16 123.2 10.5 118 343-472 217-345 (352)
69 2w4e_A MUTT/nudix family prote 99.2 6.9E-12 2.4E-16 111.5 4.4 104 342-458 14-117 (145)
70 2jvb_A Protein PSU1, mRNA-deca 99.2 4.1E-11 1.4E-15 105.8 7.6 104 344-465 16-121 (146)
71 1vhz_A ADP compounds hydrolase 99.1 5.2E-11 1.8E-15 112.1 6.9 102 345-459 60-161 (198)
72 3h95_A Nucleoside diphosphate- 99.1 7.7E-11 2.6E-15 110.6 7.9 109 342-464 36-146 (199)
73 3fcm_A Hydrolase, nudix family 99.1 2.9E-10 9.8E-15 106.4 11.4 111 344-471 57-180 (197)
74 1mk1_A ADPR pyrophosphatase; n 99.1 1.3E-11 4.5E-16 116.7 2.0 107 342-460 52-160 (207)
75 1u20_A U8 snoRNA-binding prote 99.1 3.4E-11 1.2E-15 114.6 4.4 105 342-458 53-165 (212)
76 3gz5_A MUTT/nudix family prote 99.1 1.9E-10 6.3E-15 111.7 9.0 113 343-470 35-151 (240)
77 2fb1_A Conserved hypothetical 99.1 1.7E-10 5.8E-15 110.9 8.7 104 343-461 26-131 (226)
78 2kdv_A RNA pyrophosphohydrolas 99.0 1.6E-09 5.5E-14 98.5 10.9 101 342-457 17-134 (164)
79 3fjy_A Probable MUTT1 protein; 99.0 2.4E-10 8.1E-15 117.2 5.1 114 343-471 36-171 (364)
80 2dho_A Isopentenyl-diphosphate 98.9 2.6E-09 9.1E-14 103.3 10.4 123 342-471 68-212 (235)
81 2a6t_A SPAC19A8.12; alpha/beta 98.9 3.2E-09 1.1E-13 104.9 10.7 101 344-461 113-215 (271)
82 2pny_A Isopentenyl-diphosphate 98.9 4.4E-09 1.5E-13 102.5 10.8 123 342-471 79-223 (246)
83 3kvh_A Protein syndesmos; NUDT 98.9 7.1E-10 2.4E-14 103.2 4.5 67 346-427 45-113 (214)
84 1g0s_A Hypothetical 23.7 kDa p 98.9 8.8E-10 3E-14 104.5 5.1 107 343-458 68-179 (209)
85 3o6z_A GDP-mannose pyrophospha 98.9 6.4E-10 2.2E-14 103.8 3.9 103 343-458 56-166 (191)
86 2fvv_A Diphosphoinositol polyp 98.9 1.4E-09 4.9E-14 101.9 6.4 114 342-472 51-166 (194)
87 2dsc_A ADP-sugar pyrophosphata 98.8 3.7E-09 1.3E-13 100.2 7.2 103 345-458 77-183 (212)
88 2fml_A MUTT/nudix family prote 98.7 5E-08 1.7E-12 96.3 12.1 97 344-454 55-153 (273)
89 3q91_A Uridine diphosphate glu 98.7 6.7E-09 2.3E-13 99.4 5.6 90 359-457 94-187 (218)
90 3qsj_A Nudix hydrolase; struct 98.5 3E-07 1E-11 88.8 9.2 124 345-472 24-208 (232)
91 1q33_A Pyrophosphatase, ADP-ri 98.5 3E-07 1E-11 91.7 9.4 116 346-471 140-273 (292)
92 2xsq_A U8 snoRNA-decapping enz 98.3 2.7E-07 9.2E-12 88.1 3.6 98 345-456 65-171 (217)
93 3dup_A MUTT/nudix family prote 98.2 3.2E-06 1.1E-10 84.5 8.6 102 346-457 134-241 (300)
94 3bho_A Cleavage and polyadenyl 98.2 6E-07 2.1E-11 84.4 2.7 40 345-392 73-112 (208)
95 3rh7_A Hypothetical oxidoreduc 97.8 2.6E-05 8.8E-10 78.7 6.8 100 342-473 191-292 (321)
96 2edu_A Kinesin-like protein KI 86.1 1.6 5.6E-05 35.5 6.5 60 148-214 31-90 (98)
97 2ihm_A POL MU, DNA polymerase 86.0 1.4 4.7E-05 44.8 7.2 58 158-217 26-85 (360)
98 2fmp_A DNA polymerase beta; nu 84.6 1.5 5.3E-05 43.9 6.8 60 157-217 20-81 (335)
99 1jms_A Terminal deoxynucleotid 84.5 1.6 5.5E-05 44.6 6.9 59 158-217 45-104 (381)
100 2bcq_A DNA polymerase lambda; 83.7 2 6.9E-05 43.1 7.2 47 166-213 30-76 (335)
101 2duy_A Competence protein come 83.6 0.57 2E-05 36.2 2.5 22 192-213 25-46 (75)
102 2ofk_A 3-methyladenine DNA gly 81.2 3.6 0.00012 37.7 7.2 70 115-184 30-104 (183)
103 3vdp_A Recombination protein R 80.9 0.85 2.9E-05 42.7 2.9 28 191-218 23-50 (212)
104 2i5h_A Hypothetical protein AF 80.8 0.88 3E-05 42.3 3.0 47 187-237 125-171 (205)
105 2a1j_A DNA repair endonuclease 79.2 4.9 0.00017 30.0 6.2 39 138-179 17-55 (63)
106 2jg6_A DNA-3-methyladenine gly 78.9 4.1 0.00014 37.4 6.7 70 115-184 30-104 (186)
107 1s5l_U Photosystem II 12 kDa e 78.8 1.1 3.8E-05 39.0 2.8 22 191-212 60-81 (134)
108 1x2i_A HEF helicase/nuclease; 78.7 1.1 3.7E-05 34.1 2.5 23 191-213 43-65 (75)
109 3arc_U Photosystem II 12 kDa e 78.5 1.1 3.6E-05 37.0 2.5 22 191-212 23-44 (97)
110 1vdd_A Recombination protein R 78.4 1.1 3.9E-05 42.3 2.9 27 192-218 10-36 (228)
111 1z00_A DNA excision repair pro 77.3 1.5 5E-05 35.0 2.9 24 191-214 48-71 (89)
112 2ztd_A Holliday junction ATP-d 76.8 1.4 4.7E-05 41.5 3.0 28 190-217 119-146 (212)
113 1kft_A UVRC, excinuclease ABC 75.5 1.1 3.9E-05 34.7 1.8 21 192-212 54-74 (78)
114 1z00_B DNA repair endonuclease 73.9 6.5 0.00022 31.3 5.9 40 137-179 30-69 (84)
115 2duy_A Competence protein come 73.5 3.8 0.00013 31.4 4.3 55 148-213 18-72 (75)
116 2a1j_A DNA repair endonuclease 72.6 1.8 6.1E-05 32.5 2.2 20 193-212 3-22 (63)
117 2a1j_B DNA excision repair pro 72.6 2 6.8E-05 34.4 2.6 24 191-214 61-84 (91)
118 2csb_A Topoisomerase V, TOP61; 72.4 8.8 0.0003 37.1 7.4 64 139-218 368-434 (519)
119 2edu_A Kinesin-like protein KI 69.5 2.3 7.8E-05 34.7 2.3 22 192-213 38-59 (98)
120 2kp7_A Crossover junction endo 68.3 6.7 0.00023 31.5 4.8 41 171-212 36-76 (87)
121 1ixr_A Holliday junction DNA h 67.3 2.8 9.7E-05 38.6 2.7 28 190-217 103-130 (191)
122 1cuk_A RUVA protein; DNA repai 66.2 3 0.0001 38.8 2.7 24 190-213 104-127 (203)
123 1z00_B DNA repair endonuclease 65.1 3.5 0.00012 32.9 2.5 22 192-213 16-37 (84)
124 4glx_A DNA ligase; inhibitor, 64.7 1.1 3.7E-05 48.4 -0.7 37 191-234 541-577 (586)
125 1s5l_U Photosystem II 12 kDa e 63.4 6.7 0.00023 34.1 4.1 50 150-211 56-106 (134)
126 2ztd_A Holliday junction ATP-d 62.1 3.6 0.00012 38.6 2.4 37 193-230 87-126 (212)
127 1ixr_A Holliday junction DNA h 61.7 3.9 0.00013 37.7 2.5 23 194-217 72-94 (191)
128 2fmp_A DNA polymerase beta; nu 60.0 3.7 0.00013 41.1 2.2 24 190-213 94-117 (335)
129 3sgi_A DNA ligase; HET: DNA AM 57.6 2.2 7.4E-05 46.3 0.0 24 191-214 558-581 (615)
130 1kft_A UVRC, excinuclease ABC 57.4 4 0.00014 31.5 1.6 24 193-217 23-46 (78)
131 1z00_A DNA excision repair pro 55.6 6.5 0.00022 31.1 2.6 24 193-217 18-41 (89)
132 1cuk_A RUVA protein; DNA repai 54.9 5.4 0.00019 37.1 2.3 23 194-217 73-95 (203)
133 1x2i_A HEF helicase/nuclease; 52.0 7.5 0.00026 29.2 2.3 24 193-217 13-36 (75)
134 2a1j_B DNA excision repair pro 52.0 7.3 0.00025 31.0 2.3 24 193-217 31-54 (91)
135 2bgw_A XPF endonuclease; hydro 51.0 10 0.00035 35.1 3.5 23 191-213 191-213 (219)
136 3arc_U Photosystem II 12 kDa e 50.7 12 0.00042 30.5 3.5 56 146-212 15-70 (97)
137 4gfj_A Topoisomerase V; helix- 50.5 27 0.00092 36.1 6.6 58 120-182 511-572 (685)
138 1wcn_A Transcription elongatio 50.0 10 0.00034 29.0 2.7 39 140-181 22-62 (70)
139 2rhf_A DNA helicase RECQ; HRDC 47.7 15 0.0005 28.3 3.4 29 173-208 33-61 (77)
140 1dgs_A DNA ligase; AMP complex 47.5 3.6 0.00012 45.0 -0.3 24 191-214 536-559 (667)
141 2owo_A DNA ligase; protein-DNA 46.2 4.2 0.00014 44.6 -0.0 24 191-214 541-564 (671)
142 1vq8_Y 50S ribosomal protein L 45.2 4.5 0.00015 38.7 0.0 25 193-217 14-38 (241)
143 2bcq_A DNA polymerase lambda; 45.1 13 0.00045 37.0 3.4 19 195-213 97-115 (335)
144 2w9m_A Polymerase X; SAXS, DNA 43.3 9.4 0.00032 41.0 2.2 28 189-216 92-119 (578)
145 3c1y_A DNA integrity scanning 42.7 18 0.00061 36.8 4.0 45 138-184 328-372 (377)
146 2kv2_A Bloom syndrome protein; 41.9 17 0.00059 28.5 3.0 30 172-208 34-63 (85)
147 3im1_A Protein SNU246, PRE-mRN 40.9 31 0.0011 33.9 5.4 44 164-211 131-174 (328)
148 1wud_A ATP-dependent DNA helic 40.5 21 0.00072 28.3 3.3 29 173-208 41-69 (89)
149 2ihm_A POL MU, DNA polymerase 39.4 8.5 0.00029 38.9 1.0 26 188-213 96-121 (360)
150 3r8n_M 30S ribosomal protein S 39.2 16 0.00056 30.7 2.6 27 188-214 7-36 (114)
151 2e1f_A Werner syndrome ATP-dep 37.3 22 0.00075 29.2 3.0 29 173-208 43-71 (103)
152 3b0x_A DNA polymerase beta fam 37.3 13 0.00044 39.8 2.0 25 189-213 88-112 (575)
153 3bqs_A Uncharacterized protein 37.0 31 0.0011 27.8 3.9 43 193-235 3-45 (93)
154 3c1y_A DNA integrity scanning 36.4 22 0.00074 36.1 3.4 34 178-211 327-364 (377)
155 3u5c_S 40S ribosomal protein S 35.6 20 0.00067 31.6 2.6 22 193-214 29-50 (146)
156 1jms_A Terminal deoxynucleotid 34.9 11 0.00038 38.3 1.0 26 188-213 115-140 (381)
157 2q0z_X Protein Pro2281; SEC63, 33.8 65 0.0022 31.7 6.5 45 164-211 134-178 (339)
158 2rrd_A BLM HRDC domain, HRDC d 32.7 28 0.00097 28.4 3.0 30 172-208 49-78 (101)
159 2xzm_M RPS18E; ribosome, trans 30.8 25 0.00084 31.3 2.4 22 193-214 29-50 (155)
160 3iz6_M 40S ribosomal protein S 30.7 25 0.00086 31.1 2.5 27 188-214 19-48 (152)
161 3j20_O 30S ribosomal protein S 30.6 23 0.00078 31.3 2.1 23 193-215 22-44 (148)
162 2owo_A DNA ligase; protein-DNA 30.0 53 0.0018 35.9 5.4 68 140-216 461-533 (671)
163 3mab_A Uncharacterized protein 29.8 43 0.0015 27.0 3.6 26 193-218 3-28 (93)
164 2va8_A SSO2462, SKI2-type heli 29.7 1.3E+02 0.0043 32.5 8.5 51 164-217 630-680 (715)
165 2dgz_A Werner syndrome protein 28.6 22 0.00076 29.7 1.7 27 172-205 49-75 (113)
166 3b0x_A DNA polymerase beta fam 26.3 58 0.002 34.7 4.9 57 158-214 12-73 (575)
167 1vq8_Y 50S ribosomal protein L 24.4 16 0.00054 34.8 0.0 48 163-213 20-67 (241)
168 1z3e_B DNA-directed RNA polyme 23.7 42 0.0014 25.8 2.3 47 163-211 11-58 (73)
169 1dgs_A DNA ligase; AMP complex 22.9 48 0.0016 36.2 3.4 69 140-217 456-529 (667)
170 2vqe_M 30S ribosomal protein S 22.4 28 0.00095 29.8 1.1 27 188-214 8-37 (126)
171 2nrt_A Uvrabc system protein C 21.2 44 0.0015 31.3 2.3 18 196-213 170-187 (220)
172 1u9l_A Transcription elongatio 21.1 1E+02 0.0035 23.3 4.0 39 143-184 25-64 (70)
173 3c65_A Uvrabc system protein C 20.8 21 0.00071 33.7 0.0 21 191-212 202-222 (226)
174 1exn_A 5'-exonuclease, 5'-nucl 20.7 45 0.0015 32.5 2.4 17 196-212 205-221 (290)
No 1
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=100.00 E-value=2.7e-77 Score=618.92 Aligned_cols=344 Identities=36% Similarity=0.666 Sum_probs=320.0
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHH
Q 011579 82 KIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNE 161 (482)
Q Consensus 82 ~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~eel~~ 161 (482)
.|.+.|++||+.++|++|||.. .|||++||++||+|||++++|.+++.+|+++|||+++|+++++++|.+
T Consensus 15 ~~~~~l~~w~~~~~r~lpw~~~----------~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~pt~~~la~a~~~~l~~ 84 (369)
T 3fsp_A 15 EFQRDLLDWFARERRDLPWRKD----------RDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLK 84 (369)
T ss_dssp HHHHHHHHHHHHHCCCCGGGSC----------CCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCC----------CChHHHHHHHHHhccCcHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHH
Confidence 5999999999999999999984 689999999999999999999999999999999999999999999999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhhcccCCC
Q 011579 162 MWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANP 240 (482)
Q Consensus 162 ~i~~lG~~~RA~~L~~~a~~i~~~-~g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~~~~~~ 240 (482)
+|+++|||+||++|+++|+.++++ +|.+|+++++|++|||||+|||++||+|+||+|+++||+||+|++.|+|+++.++
T Consensus 85 ~i~~~G~~~ra~~l~~~a~~~~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rv~~rl~~~~~~~ 164 (369)
T 3fsp_A 85 AWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLVTDDI 164 (369)
T ss_dssp TTTTSSCTHHHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTTCCSCT
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHhcCCCcCHHHHHHHHHHHCCCCcccccHHHHHHHHHHcCcccCc
Confidence 999999999999999999999997 8899999999999999999999999999999999999999999999999988766
Q ss_pred CChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhhhhccCCCCCCCCCCCcccChhhhccCCCCCcceecccccccccccc
Q 011579 241 KDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQR 320 (482)
Q Consensus 241 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~~~~~~~~~~~P~k~~K~k~~ 320 (482)
....+.+.++..++.++|.+.|++||++||+||+.+|++++|+|+.|||++.|.+++.+. +..||+|++|++.+
T Consensus 165 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~------~~~~PvK~~kk~~~ 238 (369)
T 3fsp_A 165 AKPSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGV------AEELPVKMKKTAVK 238 (369)
T ss_dssp TSHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHTSCSSSCCTTTCTTGGGCHHHHHTC------GGGCSCCCCCCCCE
T ss_pred cccchHHHHHHHHHHhCChhhHHHHHHHHHHHHHHhcCCCCCCCCCCCChhhhHHHhcCC------cccCCccccccCcc
Confidence 556778899999999999999999999999999999999999999999999999999985 68999999998888
Q ss_pred eeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCccc
Q 011579 321 HDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSI 400 (482)
Q Consensus 321 ~~~vav~Ii~~~~~~~~~~~~~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~ 400 (482)
.+.++++||. +.+|+||+.||+++|+|+|+||||||++|.| ++ ++|+.||+.||+|+++.
T Consensus 239 ~~~~~~~vi~-----------~~~g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~---~~al~REl~EE~Gl~v~----- 298 (369)
T 3fsp_A 239 QVPLAVAVLA-----------DDEGRVLIRKRDSTGLLANLWEFPSCETDGA-DG---KEKLEQMVGEQYGLQVE----- 298 (369)
T ss_dssp EEEEEEEEEE-----------CSSSEEEEEECCSSSTTTTCEECCEEECSSS-CT---HHHHHHHHTTSSSCCEE-----
T ss_pred eEEEEEEEEE-----------eCCCEEEEEECCCCCCcCCcccCCCcccCCC-Cc---HHHHHHHHHHHhCCcee-----
Confidence 8888888874 5689999999999999999999999999988 76 89999999999999986
Q ss_pred ccccccccEEEEcCceEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccC
Q 011579 401 ILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKS 472 (482)
Q Consensus 401 ~~~~~l~~v~H~fth~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~ 472 (482)
....++.+.|.|+|+++++++|.+. +.++ ..++.+++|++++++.+++||++++++++.+.
T Consensus 299 -~~~~l~~~~h~~~h~~~~~~~~~~~--~~~~--------~~e~~~~~Wv~~~el~~~~l~~~~~~il~~l~ 359 (369)
T 3fsp_A 299 -LTEPIVSFEHAFSHLVWQLTVFPGR--LVHG--------GPVEEPYRLAPEDELKAYAFPVSHQRVWREYK 359 (369)
T ss_dssp -ECCCCCEEEEECSSEEEEEEEEEEE--ECCS--------SCCCTTEEEEEGGGGGGSCCCHHHHHHHHHHH
T ss_pred -eecccccEEEEcceEEEEEEEEEEE--EcCC--------CCCccccEEeeHHHhhhCCCCHHHHHHHHHHH
Confidence 5568899999999999999999885 3432 15678899999999999999999999998873
No 2
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-55 Score=437.98 Aligned_cols=226 Identities=58% Similarity=1.044 Sum_probs=206.4
Q ss_pred hhc-CHHHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHH
Q 011579 73 DLF-SEKEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHL 151 (482)
Q Consensus 73 ~~~-~~~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~L 151 (482)
++| +++++..|++.|++||+.++|+||||.+.. ...+...|||++||++||+|||++++|.+++.+|+++|||+++|
T Consensus 7 ~~~~~~~~~~~~~~~ll~Wy~~~~R~lPWR~~~~--~~~d~~~dpfe~LVs~ILsQQts~~~v~~~~~rL~~~fptpe~L 84 (287)
T 3n5n_X 7 HLFRDVAEVTAFRGSLLSWYDQEKRDLPWRRRAE--DEMDLDRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDL 84 (287)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH--HCCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCSHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCCCCcCcCc--cccCCCCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCCCHHHH
Confidence 445 447788999999999999999999998421 01112367999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHc-CCCCCCchhhhhc-CCCCcHHHHHHHHHhhcCCeeeeecCchhhh
Q 011579 152 AKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRK-VPGIGNYTAGAIASIAFKEVVPVVDGNVIRV 229 (482)
Q Consensus 152 a~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~-~g~~p~~~~~L~~-lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rv 229 (482)
+++++++|+++|+++|||+||++|+++|+.++++ +|.+|+++++|++ |||||+|||++||+|+||+|+++||+||+||
T Consensus 85 a~a~~eel~~~ir~lG~~~KA~~L~~~A~~i~~~~~g~~p~~~~~Ll~~LpGIG~kTA~~iL~~a~g~p~~~VDt~V~Rv 164 (287)
T 3n5n_X 85 ASASLEEVNQLWAGLGYYSRGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARV 164 (287)
T ss_dssp HTSCHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSTTCCCSSHHHHHHHSTTCCHHHHHHHHHHHSCCCCCCCCHHHHHH
T ss_pred HcCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 9999999999999999999999999999999997 8899999999999 9999999999999999999999999999999
Q ss_pred HHhhhcccCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhhhhccCCCCCCCCCCCcccChhhhccC
Q 011579 230 LARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSK 300 (482)
Q Consensus 230 l~Rl~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~ 300 (482)
+.|+|+++.+.+...+.+.+|.+++.++|.+.|++||++||+||+.+|++++|+|+.|||++.|.+|+.+.
T Consensus 165 ~~Rlg~i~~~~~~~~~~~~l~~~a~~~lp~~~~~~~h~~L~~~Gr~iC~~r~P~C~~Cpl~~~C~~~~~~~ 235 (287)
T 3n5n_X 165 LCRVRAIGADPSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQRVE 235 (287)
T ss_dssp HHHHTTCCSCTTSHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHTSCSSSCCTTSCTTGGGCHHHHHHH
T ss_pred HHHhCCCCCCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhHHHcCCCCCCCCCCCChhhhHHHHhcc
Confidence 99999987655555677889998999999999999999999999999999999999999999999998764
No 3
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=100.00 E-value=1.3e-52 Score=406.32 Aligned_cols=219 Identities=44% Similarity=0.817 Sum_probs=204.8
Q ss_pred HHHHHHHHHHhhCCC-CCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHH
Q 011579 82 KIRQSLLQWYDKNQR-ELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVN 160 (482)
Q Consensus 82 ~~~~~L~~wy~~~~r-~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~eel~ 160 (482)
.|.+.|.+||+.+++ ++|||.. .|||++||++||+|||++++|.+++.+|++.||||++|+++++++|.
T Consensus 5 ~~~~~l~~~~~~~g~~~l~w~~~----------~~pfe~lv~~IlsQqt~~~~v~~~~~~l~~~~pt~~~la~~~~~~l~ 74 (225)
T 1kg2_A 5 QFSAQVLDWYDKYGRKTLPWQID----------KTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVL 74 (225)
T ss_dssp HHHHHHHHHHHHHCCCCSGGGSS----------CCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCSSHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCC----------CCHHHHHHHHHHHCcCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHH
Confidence 699999999999997 8999974 58999999999999999999999999999999999999999999999
Q ss_pred HHHhccCcHHHHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhhcccCC
Q 011579 161 EMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISAN 239 (482)
Q Consensus 161 ~~i~~lG~~~RA~~L~~~a~~i~~~-~g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~~~~~ 239 (482)
++|+++|||+||++|+++|+.++++ +|.+|+++++|++|||||+|||++||+|+||+|+++||+||+|++.|+++++..
T Consensus 75 ~~i~~~G~~~kA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a~~~~~~~vD~~v~Rv~~rl~~~~~~ 154 (225)
T 1kg2_A 75 HLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGW 154 (225)
T ss_dssp HHHTTSCCTHHHHHHHHHHHHHHHHSTTSCCCSHHHHHTSTTCCHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHTCCSC
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHhCCCchHHHHHHhcCCCCcHHHHHHHHHHhCCCCcceeCHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999987 789999999999999999999999999999999999999999999999988655
Q ss_pred CCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhhhhccCCCCCCCCCCCcccChhhhccCCCCCcceecccccccc
Q 011579 240 PKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLK 316 (482)
Q Consensus 240 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~~~~~~~~~~~P~k~~K 316 (482)
+....+.+.+++.++.++|.+.|++||++||+||+.+|++++|+|+.|||++.|++++.+. +..||+|++|
T Consensus 155 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~------~~~~p~~~~~ 225 (225)
T 1kg2_A 155 PGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNS------WALYPGKKPK 225 (225)
T ss_dssp TTSHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHHTC------GGGSSCCCC-
T ss_pred CCccchHHHHHHHHHHHCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhCHHHHcCC------cccCCCCCCC
Confidence 5445677889999999999999999999999999999999999999999999999999885 5789987653
No 4
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=100.00 E-value=8.3e-51 Score=392.65 Aligned_cols=213 Identities=28% Similarity=0.595 Sum_probs=197.3
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCC
Q 011579 76 SEKEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKAS 155 (482)
Q Consensus 76 ~~~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~ 155 (482)
+++++..|++.|..||+.+++.+||+.. .|||++||++||+|||++++|.+++.+|++.||||++|++++
T Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~~pw~~~----------~~pfe~lv~~IlsQqts~~~~~~~~~~l~~~fptp~~la~a~ 74 (221)
T 1kea_A 5 TNKKRKVFVSTILTFWNTDRRDFPWRHT----------RDPYVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDILKTP 74 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCGGGGC----------CCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHHSC
T ss_pred cHHHHHHHHHHHHHHHHHhhhhCcCCCC----------CCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCCHHHHHCCC
Confidence 3566778999999999999999999974 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcHH-HHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhh
Q 011579 156 LEEVNEMWAGLGYYR-RARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARL 233 (482)
Q Consensus 156 ~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~-~g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl 233 (482)
+++|.++|+++|||+ ||++|+++|+.++++ +|.+|+++++|++|||||+|||++|++|+||+|+++||+||+|++.|+
T Consensus 75 ~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~~~~~~~~~vD~~v~Rv~~rl 154 (221)
T 1kea_A 75 KSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRY 154 (221)
T ss_dssp HHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTTSCCSCHHHHHTSTTCCHHHHHHHHHHTTCCCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhCCCchHHHHHHHhCCCCcHHHHHHHHHHhcCCCcceecHHHHHHHHHH
Confidence 999999999999998 999999999999997 889999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhhhhccCCCCCCCCCCCcccChhhhcc
Q 011579 234 KAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMS 299 (482)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~ 299 (482)
+++...++... .+.++++++.++|.+.|++||++||+||+.+|++++|+|+.|||++.|+++..+
T Consensus 155 ~gl~~~~~~~~-~~~l~~~ae~~~P~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~ 219 (221)
T 1kea_A 155 FGGSYENLNYN-HKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYYEKC 219 (221)
T ss_dssp HCGGGTTCCTT-SHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHTC
T ss_pred hCCCCCCCcHH-HHHHHHHHHHhCChhhHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhchhhhcC
Confidence 55543333223 567888999999999999999999999999999999999999999999998765
No 5
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=100.00 E-value=4.2e-47 Score=367.83 Aligned_cols=204 Identities=23% Similarity=0.369 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHH
Q 011579 78 KEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLE 157 (482)
Q Consensus 78 ~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~e 157 (482)
+.+..+.+.|.+||+...+.++|+ |||++||++||+|||++++|..++.+|++.||||++|++++++
T Consensus 8 ~~~~~i~~~L~~~y~~~~~~l~~~-------------~pfe~Lv~~IlsQqts~~~v~~~~~~l~~~fpt~~~la~a~~~ 74 (226)
T 1orn_A 8 QQIRYCLDEMAKMFPDAHCELVHR-------------NPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLE 74 (226)
T ss_dssp HHHHHHHHHHHHHCTTCCCCSCCS-------------SHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCCSHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHcCccCCCCCCC-------------CHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCCCHHHHHcCCHH
Confidence 556689999999999877666665 4999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCcHH-HHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhhc
Q 011579 158 EVNEMWAGLGYYR-RARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKA 235 (482)
Q Consensus 158 el~~~i~~lG~~~-RA~~L~~~a~~i~~~-~g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~ 235 (482)
+|+++|+++|||+ ||++|+++|+.++++ +|.+|+++++|++|||||+|||++||+|+||+|+++||+||.|++.|+|+
T Consensus 75 ~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a~g~~~~~vD~~v~Rv~~rlg~ 154 (226)
T 1orn_A 75 ELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGF 154 (226)
T ss_dssp HHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTS
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHCCCccHHHHHHHHHHHCCCceeeeCHHHHHHHHHhCC
Confidence 9999999999998 999999999999987 78999999999999999999999999999999999999999999999988
Q ss_pred ccCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhhhhccCCCCCCCCCCCcccChhhhc
Q 011579 236 ISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSM 298 (482)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~ 298 (482)
++... +..+++..++.++|.+.|+++|++||+||+.+|++++|+|+.|||++.|+++..
T Consensus 155 ~~~~~----~~~~~~~~l~~~~p~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~ 213 (226)
T 1orn_A 155 CRWDD----SVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKK 213 (226)
T ss_dssp SCTTC----CHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTSCSSCCCGGGCTTGGGCHHHHH
T ss_pred CCCCC----CHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhhhhHhh
Confidence 65322 234567778889999999999999999999999999999999999999998854
No 6
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=100.00 E-value=4.4e-47 Score=364.15 Aligned_cols=203 Identities=19% Similarity=0.291 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCH
Q 011579 77 EKEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASL 156 (482)
Q Consensus 77 ~~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~ 156 (482)
.+++..+.+.|.+||+...+.++|+ |||++||++||+|||++++|..++.+|++.||||++|+++++
T Consensus 3 ~~~~~~i~~~L~~~~~~~~~~~~~~-------------~pfe~lv~~Il~qqts~~~v~~~~~~l~~~fpt~~~la~a~~ 69 (211)
T 2abk_A 3 KAKRLEILTRLRENNPHPTTELNFS-------------SPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGV 69 (211)
T ss_dssp HHHHHHHHHHHHHHCSSCCCSSCCS-------------SHHHHHHHHHHTTTSCHHHHHHHHHHHTTTCCSHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCcCCCCC-------------CHHHHHHHHHHhCCCCHHHHHHHHHHHHHHCCCHHHHHCCCH
Confidence 3456689999999998776555544 599999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCcHH-HHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhh
Q 011579 157 EEVNEMWAGLGYYR-RARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLK 234 (482)
Q Consensus 157 eel~~~i~~lG~~~-RA~~L~~~a~~i~~~-~g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~ 234 (482)
++|.++|+++|||+ ||++|+++|+.+.++ +|.+|+++++|++|||||+|||++||+|+||+|+++||+||.|++.|+|
T Consensus 70 ~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rv~~rlg 149 (211)
T 2abk_A 70 EGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQ 149 (211)
T ss_dssp HHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHhCCCCChHHHHHHHHHHCCCCcCCcCHHHHHHHHHhC
Confidence 99999999999998 999999999999987 7899999999999999999999999999999999999999999999998
Q ss_pred cccCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhhhhccCCCCCCCCCCCcccChhhh
Q 011579 235 AISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYS 297 (482)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~ 297 (482)
+.+. .+.++++..++.++|.+.+++||++||+||+.+|++++|+|+.|||++.|+++.
T Consensus 150 l~~~-----~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~ 207 (211)
T 2abk_A 150 FAPG-----KNVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKE 207 (211)
T ss_dssp SSCC-----SSHHHHHHHHHHHSCGGGTTTHHHHHHHHHHHTSCSSSCCGGGCTTGGGCCCTT
T ss_pred CCCC-----CCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHCCCCCCCCCCCCChhhCCCcC
Confidence 6431 134567778888999999999999999999999999999999999999999763
No 7
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=100.00 E-value=1.2e-35 Score=286.12 Aligned_cols=182 Identities=19% Similarity=0.197 Sum_probs=155.6
Q ss_pred HHHHHHHHHH-HhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHh-CCC------HHHHH
Q 011579 81 KKIRQSLLQW-YDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTK-WPT------IHHLA 152 (482)
Q Consensus 81 ~~~~~~L~~w-y~~~~r~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~-~pt------~~~La 152 (482)
.++.+.|.+| |+.+++.+ |+.. .|||++||++||+|||++++|.+++.+|+++ ||| |++|+
T Consensus 5 ~~i~~~L~~~~~~~~~~~~-~~~~----------~dpfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~~~~~t~~~la 73 (218)
T 1pu6_A 5 FEILKALKSLDLLKNAPAW-WWPN----------ALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIA 73 (218)
T ss_dssp HHHHHHHHTTTTTTTSCTT-SSTT----------TTSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHH
T ss_pred HHHHHHHHHccCcccCCCc-CCCC----------CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCccccccHHHHH
Confidence 3688999999 99998865 6542 5799999999999999999999999999999 999 99999
Q ss_pred hCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHc-CC----CCCCchhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCch
Q 011579 153 KASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAE-GD----GFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNV 226 (482)
Q Consensus 153 ~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~-~g----~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v 226 (482)
++++++|.++|+++|||+ ||++|+++|+.+.++ +| .+|+++++|++|||||+|||++||+|++|+|+++||+||
T Consensus 74 ~~~~e~L~~~ir~~G~~~~KA~~L~~~a~~i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~a~~~~~~~vD~~v 153 (218)
T 1pu6_A 74 YIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYS 153 (218)
T ss_dssp HSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCCHHH
T ss_pred hCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHhcCChhhccchHHHHHHHcCCCcCHHHHHHHHHHHCCCCccccCHHH
Confidence 999999999999999999 999999999999987 56 678999999999999999999999999999999999999
Q ss_pred hhhHHhhhcccCCCCChHHHHHHHHHHHhhcC------------CCChhHHHHHHHHHhhh
Q 011579 227 IRVLARLKAISANPKDTSTVKNFWKLATQLVD------------SCRPGDFNQSLMELGAV 275 (482)
Q Consensus 227 ~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~l~~------------~~~~~~~~~~l~~~G~~ 275 (482)
+|++.|+|+. ..+.....+.+++.+...+| .+.+.+||..||+||+.
T Consensus 154 ~Ri~~rlg~~--~~~~~~~~~~l~~~~p~~lp~~~~~~~~~~~~~~~~~~~h~liv~~Gk~ 212 (218)
T 1pu6_A 154 YLFLKKLGIE--IEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQ 212 (218)
T ss_dssp HHHHHHTTCC--CCSHHHHHHHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCC--CCCHHHHHHHHHHhhhhcCcchhhhcccccchHHHHHHHHHHHHHHhhh
Confidence 9999999765 22212233333331111444 34589999999999997
No 8
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=99.97 E-value=6.7e-32 Score=247.67 Aligned_cols=132 Identities=18% Similarity=0.242 Sum_probs=120.4
Q ss_pred CCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHH
Q 011579 99 PWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLE 177 (482)
Q Consensus 99 pwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~ 177 (482)
|++.+. +..+|...+|||++|||+||+|||++++|.+++.+|+++|||+++|++|++++|+++|+++|||+ ||++|++
T Consensus 15 pp~sp~-~l~qE~~~~dP~~vLVs~ILsqQT~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~ 93 (161)
T 4e9f_A 15 PPRSPF-NLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVK 93 (161)
T ss_dssp CCCCTT-CCTHHHHTTSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHSCSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred CCCCCc-chhhhhhcCChHHHHHHHHHHhhCcHHHHHHHHHHHHHHCCCHHHHhccChHhHHhHhhhcCCHHHHHHHHHH
Confidence 555543 45577788999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHhhcCC--eeeeecCchhhhHHhhhccc
Q 011579 178 GAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIAFKE--VVPVVDGNVIRVLARLKAIS 237 (482)
Q Consensus 178 ~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~--p~~~vD~~v~Rvl~Rl~~~~ 237 (482)
+|+.+ +|+++++|++|||||+|||++|++||+|. +++++|+|++|++.++....
T Consensus 94 ~a~~~------vp~~~~~L~~LpGVG~yTAdav~~F~~~e~~~V~p~D~~l~r~l~wl~~~~ 149 (161)
T 4e9f_A 94 FSDEY------LTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENH 149 (161)
T ss_dssp HHHHH------HHSCCSSGGGSTTCCHHHHHHHHHHTSSCGGGCCCCSHHHHHHHHHHHHTC
T ss_pred HhCCc------CCCChhhhhcCCCchHHHHHHHHHHHCCCCCCCCCCcHHHHHHHHHHHcCc
Confidence 99855 57788999999999999999999999995 78999999999999987543
No 9
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=99.96 E-value=8.4e-30 Score=243.41 Aligned_cols=168 Identities=12% Similarity=0.160 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHH
Q 011579 78 KEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLE 157 (482)
Q Consensus 78 ~~~~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~e 157 (482)
+++..+.+...+-|+ ..||+.. .|||++||++||+|||++++|.+++.+| ++.|+.++++
T Consensus 9 ~~~~~~v~~~~~~f~----~~~~~~~----------~~~fe~Lv~~ILsqqts~~~~~~~~~~L------~~~l~~~~~e 68 (207)
T 3fhg_A 9 PKVRARVLERVDEFR----LNNLSNE----------EVWFRELTLCLLTANSSFISAYQALNCL------GQKIYYANEE 68 (207)
T ss_dssp HHHHHHHHHHHHHHH----HHHTSCH----------HHHHHHHHHHHHHTTSCHHHHHHHHHHH------GGGGGTCCHH
T ss_pred HHHHHHHHHHHHHHh----hccCCCc----------CCHHHHHHHHHHcCCCCHHHHHHHHHHH------HHHHHcCCHH
Confidence 444444444444443 5689874 5799999999999999999999999998 4889999999
Q ss_pred HHHHHHhccC--cHH-HHHHHHHHHHHHHHc--------CCCCC-CchhhhhcCCCCcHHHHHHHHHh-hcCCeeeeecC
Q 011579 158 EVNEMWAGLG--YYR-RARFLLEGAKMIVAE--------GDGFP-NTVSDLRKVPGIGNYTAGAIASI-AFKEVVPVVDG 224 (482)
Q Consensus 158 el~~~i~~lG--~~~-RA~~L~~~a~~i~~~--------~g~~p-~~~~~L~~lpGIG~~TA~~il~f-a~~~p~~~vD~ 224 (482)
+|.++|+++| ||+ ||++|+++|+.+.+. .|..| +++++|++|||||+|||++||+| ++ .++++||+
T Consensus 69 ~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~~~~~l~~~~~~~~~~~~~~L~~lpGIG~kTA~~il~~~~~-~~~~~vD~ 147 (207)
T 3fhg_A 69 EIRNILKSCKYRFYNLKAKYIIMAREKVYGRLKEEIKPLADEDQQLARERLLNIKGIGMQEASHFLRNVGY-FDLAIIDR 147 (207)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHHTTC-CSSCCCCH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CCcceecH
Confidence 9999999666 898 999999999965432 33466 78999999999999999999998 77 78999999
Q ss_pred chhhhHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhhhhccC
Q 011579 225 NVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTP 279 (482)
Q Consensus 225 ~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~ 279 (482)
||+|++.|+|+++....+ .+++..+.++|..|++||+.+|.+
T Consensus 148 ~v~Ri~~rlg~~~~~~~k-------------~~~~k~y~~~~~~l~~~~~~~~~~ 189 (207)
T 3fhg_A 148 HIIDFMRRIGAIGETNVK-------------QLSKSLYISFENILKSIASNLNMS 189 (207)
T ss_dssp HHHHHHHHTTSSCCCCCS-------------CCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCCccccc-------------cCCHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999987642111 233445778999999999998865
No 10
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=99.95 E-value=1.1e-28 Score=236.18 Aligned_cols=145 Identities=16% Similarity=0.163 Sum_probs=128.3
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccC--cHH-HHHHHHHHHH--HHHHc-CC
Q 011579 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLG--YYR-RARFLLEGAK--MIVAE-GD 187 (482)
Q Consensus 114 ~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~eel~~~i~~lG--~~~-RA~~L~~~a~--~i~~~-~g 187 (482)
.|||++||++||+|||++++|..++.+|+ +.|+++++++|+++|+++| ||+ ||++|+++|+ .+.+. +|
T Consensus 42 ~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~------~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~~~~l~~~~~~ 115 (214)
T 3fhf_A 42 EEWFKELCFCILTANFTAEGGIRIQKEIG------DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKNIKDIVES 115 (214)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHT------THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGGGCCHHHHHHH
T ss_pred CChHHHHHHHHHcCCCCHHHHHHHHHHHH------HHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 57999999999999999999999999996 7799999999999999999 999 9999999999 76665 33
Q ss_pred --CCCCchhhhh-cCCCCcHHHHHHHHHhhcCCeeee-ecCchhhhHHhhhcccCCCCChHHHHHHHHHHHhhcCCCChh
Q 011579 188 --GFPNTVSDLR-KVPGIGNYTAGAIASIAFKEVVPV-VDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPG 263 (482)
Q Consensus 188 --~~p~~~~~L~-~lpGIG~~TA~~il~fa~~~p~~~-vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 263 (482)
++|+++++|+ +|||||+|||++||+++ |.+.++ ||+||+|+++|+|+++..+ +.+++..|.
T Consensus 116 ~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~-g~~~~~vVDthv~Ri~~RlG~~~~~~--------------k~lt~~~y~ 180 (214)
T 3fhf_A 116 FENEKVAREFLVRNIKGIGYKEASHFLRNV-GYDDVAIIDRHILRELYENNYIDEIP--------------KTLSRRKYL 180 (214)
T ss_dssp SSSHHHHHHHHHHHSTTCCHHHHHHHHHHT-TCCSCCCCCHHHHHHHHHTTSSSSCC--------------SSCCHHHHH
T ss_pred cCCcHHHHHHHHHhCCCCCHHHHHHHHHHc-CCCCcccCcHHHHHHHHHcCCCCCCC--------------CcCCHHHHH
Confidence 6789999999 99999999999999998 556554 9999999999999986422 124555688
Q ss_pred HHHHHHHHHhhhhccC
Q 011579 264 DFNQSLMELGAVICTP 279 (482)
Q Consensus 264 ~~~~~l~~~G~~iC~~ 279 (482)
++|..|++||+.+|.+
T Consensus 181 e~~~~l~~~g~~~g~~ 196 (214)
T 3fhf_A 181 EIENILRDIGEEVNLK 196 (214)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCC
Confidence 9999999999999976
No 11
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=99.95 E-value=4.3e-27 Score=228.22 Aligned_cols=154 Identities=14% Similarity=0.223 Sum_probs=128.4
Q ss_pred HHHHHHHhhCCC-CCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHh------CCCHHHHHhCCHH
Q 011579 85 QSLLQWYDKNQR-ELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTK------WPTIHHLAKASLE 157 (482)
Q Consensus 85 ~~L~~wy~~~~r-~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~------~pt~~~La~a~~e 157 (482)
..|..++...+. .+||+. ..|||++||++||+|||++++|..++.+|.++ ||||++|++++++
T Consensus 38 p~l~~li~~~~g~rl~~~~----------~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e 107 (232)
T 4b21_A 38 NKWSSLVKKVGPCTLTPHP----------EHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVE 107 (232)
T ss_dssp HHHHHHHHHHCSCCCCCCT----------TSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHH
T ss_pred HHHHHHHHHcCCCCCCCCC----------CCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHH
Confidence 345566766543 566654 35899999999999999999999999999998 8999999999999
Q ss_pred HHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCC-----------CchhhhhcCCCCcHHHHHHHHHhhcCCe-eeee-c
Q 011579 158 EVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFP-----------NTVSDLRKVPGIGNYTAGAIASIAFKEV-VPVV-D 223 (482)
Q Consensus 158 el~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p-----------~~~~~L~~lpGIG~~TA~~il~fa~~~p-~~~v-D 223 (482)
+| +++||++ ||++|+++|+.+.+ |.+| +.+++|++|||||+|||++||+|+||+| +++| |
T Consensus 108 ~L----r~~Gl~~~Ka~~l~~~A~~~~~--g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~fpv~D 181 (232)
T 4b21_A 108 TL----HECGFSKLKSQEIHIVAEAALN--KQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADD 181 (232)
T ss_dssp HH----HTTTCCHHHHHHHHHHHHHHHT--TCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTC
T ss_pred HH----HHcCCcHHHHHHHHHHHHHHHh--CCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCcc
Confidence 85 7899988 89999999999987 4454 5689999999999999999999999997 6777 9
Q ss_pred CchhhhHHhhhcccCCCCChHHHHHHHHHHHhhcC
Q 011579 224 GNVIRVLARLKAISANPKDTSTVKNFWKLATQLVD 258 (482)
Q Consensus 224 ~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~l~~ 258 (482)
+||+|++.|+++.+..++ .+++.+.++.+-|
T Consensus 182 ~~v~r~~~rl~~~~~~~~----~~~~~~~~e~w~P 212 (232)
T 4b21_A 182 STLKNEAKEFFGLSSKPQ----TEEVEKLTKPCKP 212 (232)
T ss_dssp HHHHHHHHHHTTCSSCCC----HHHHHHHTGGGTT
T ss_pred HHHHHHHHHHhCCCCCCC----HHHHHHHHHHccC
Confidence 999999999998765432 3456665555543
No 12
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=99.94 E-value=3.3e-27 Score=229.36 Aligned_cols=157 Identities=13% Similarity=0.057 Sum_probs=135.3
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHh----CCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcC--
Q 011579 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTK----WPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEG-- 186 (482)
Q Consensus 114 ~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~----~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~-- 186 (482)
.|||++||++||+|||++++|..++.+|+++ ||||++|+++++++| +++||++ ||++|+++|+.+.++.
T Consensus 49 ~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~L----r~~G~~~~KA~~I~~~A~~i~~~~~~ 124 (233)
T 2h56_A 49 PNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEAL----RQAGVSKRKIEYIRHVCEHVESGRLD 124 (233)
T ss_dssp SCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHH----HHTTCCHHHHHHHHHHHHHHHTTSSC
T ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 6899999999999999999999999999997 479999999999986 8999998 9999999999999862
Q ss_pred CC----CC--CchhhhhcCCCCcHHHHHHHHHhhcCCe-eeeecCchhhhHHhhhcccCCCCChHHHHHHHHHHHhhcCC
Q 011579 187 DG----FP--NTVSDLRKVPGIGNYTAGAIASIAFKEV-VPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDS 259 (482)
Q Consensus 187 g~----~p--~~~~~L~~lpGIG~~TA~~il~fa~~~p-~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~l~~~ 259 (482)
++ .| +++++|++|||||+|||++||+|+||+| +++||+|+.|++.|+++.... ..+.+++++.++.+.|.
T Consensus 125 ~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~pvdd~~~r~~~~~~~~~~~---~~~~~~~~~~~e~~~P~ 201 (233)
T 2h56_A 125 FTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGAKWLYGNGE---GDGKKLLIYHGKAWAPY 201 (233)
T ss_dssp HHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCTTCHHHHHHHHHHHSSSC---SCHHHHHHHHHGGGTTC
T ss_pred HHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCchHHHHHHHHHhccCCC---CCCHHHHHHHHHHcCcH
Confidence 22 36 7899999999999999999999999998 899999999999998764321 12456777888888888
Q ss_pred CChhHHHHHHHHHhhhhc
Q 011579 260 CRPGDFNQSLMELGAVIC 277 (482)
Q Consensus 260 ~~~~~~~~~l~~~G~~iC 277 (482)
..+..+|.+.++.|..-|
T Consensus 202 ~~~a~~~lw~~~~~~~~~ 219 (233)
T 2h56_A 202 ETVACLYLWKAAGTFAEE 219 (233)
T ss_dssp HHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhcccccccc
Confidence 888888888888776543
No 13
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=99.94 E-value=1.2e-27 Score=229.90 Aligned_cols=143 Identities=19% Similarity=0.194 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHhhCCCCC----CCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhC
Q 011579 79 EVKKIRQSLLQWYDKNQREL----PWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKA 154 (482)
Q Consensus 79 ~~~~~~~~L~~wy~~~~r~l----pwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a 154 (482)
++..+.+.+..-+...-.++ ||+.. .|||++||++||+|||++++|.+++.+| |+.|+.+
T Consensus 19 ~~~~~~~~~~~~i~~r~~ef~~~~~~~~~----------~~~fe~Lv~~ILsqqts~~~~~~a~~~L------p~~l~~~ 82 (219)
T 3n0u_A 19 ELERIREEAKPLVEQRFEEFKRLGEEGTE----------EDLFCELSFCVLTANWSAEGGIRAQKEI------GKGFVHL 82 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCH----------HHHHHHHHHHHHTTTSCHHHHHHHHHHH------TTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCC----------CCHHHHHHHHHHhCCCCHHHHHHHHHHH------HHHHHcC
Confidence 44455555554444332222 66753 5799999999999999999999999998 6789999
Q ss_pred CHHHHHHHHhccC--cHH-HHHHHHHHHHHH---HHc-CCCCCCchhhhh-cCCCCcHHHHHHHHHhhcCC-eeeeecCc
Q 011579 155 SLEEVNEMWAGLG--YYR-RARFLLEGAKMI---VAE-GDGFPNTVSDLR-KVPGIGNYTAGAIASIAFKE-VVPVVDGN 225 (482)
Q Consensus 155 ~~eel~~~i~~lG--~~~-RA~~L~~~a~~i---~~~-~g~~p~~~~~L~-~lpGIG~~TA~~il~fa~~~-p~~~vD~~ 225 (482)
++++|+++|+++| ||+ ||++|+++|+.+ .+. ++++|+++++|+ +|||||+|||++||+| +|. |+++||+|
T Consensus 83 ~~eeL~~~Ir~~G~Rf~~~KA~~I~~~a~~ig~l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~-~g~~~~~~VDth 161 (219)
T 3n0u_A 83 PLEELAEKLREVGHRYPQKRAEFIVENRKLLGKLKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRN-TGVEDLAILDKH 161 (219)
T ss_dssp CHHHHHHHHHHTTCSSHHHHHHHHHHHGGGTTTHHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHT-TTCCSCCCCCHH
T ss_pred CHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHHH-cCCCCeeeecHH
Confidence 9999999999999 998 999999999975 333 678899999999 9999999999999999 776 89999999
Q ss_pred hhhhHHhhhcccC
Q 011579 226 VIRVLARLKAISA 238 (482)
Q Consensus 226 v~Rvl~Rl~~~~~ 238 (482)
|.|++.|+|+++.
T Consensus 162 v~Ri~~rlg~~~~ 174 (219)
T 3n0u_A 162 VLRLMKRHGLIQE 174 (219)
T ss_dssp HHHHHHHTTSCSS
T ss_pred HHHHHHHcCCCCc
Confidence 9999999999875
No 14
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=99.93 E-value=1.1e-25 Score=217.63 Aligned_cols=141 Identities=21% Similarity=0.229 Sum_probs=119.0
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHhC--CCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCC---
Q 011579 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKW--PTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGD--- 187 (482)
Q Consensus 114 ~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~--pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g--- 187 (482)
.|||++||++||+|||+++++..++.+|.++| |||++|+++++++| +++||++ ||++|+++|+.+.++..
T Consensus 59 ~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~la~~~~e~L----r~~G~~~~KA~~i~~lA~~~~~g~~~l~ 134 (225)
T 2yg9_A 59 PDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDL----RGVGLSWAKVRTVQAAAAAAVSGQIDFA 134 (225)
T ss_dssp SCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHHTTSCHHHH----HHTTCCHHHHHHHHHHHHHHHTTSSCGG
T ss_pred CCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHHHcCCHHHH----HHCCCcHHHHHHHHHHHHHHHhCCcCHH
Confidence 68999999999999999999999999999999 99999999999986 8899987 99999999999998422
Q ss_pred ---CCCCc--hhhhhcCCCCcHHHHHHHHHhhcCCe-eeee-cCchhhhHHhhhcccCCCCChHHHHHHHHHHHhhcCCC
Q 011579 188 ---GFPNT--VSDLRKVPGIGNYTAGAIASIAFKEV-VPVV-DGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSC 260 (482)
Q Consensus 188 ---~~p~~--~~~L~~lpGIG~~TA~~il~fa~~~p-~~~v-D~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~~l~~~~ 260 (482)
..|.+ +++|++|||||+|||++||+|++|+| +++| |+||+|++.|++ . ++ .+.+.++.+.|..
T Consensus 135 ~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fpv~D~~v~r~~~~l~--~--~~------~~~~~~e~~~P~r 204 (225)
T 2yg9_A 135 HLSGQPDELVIAELVQLPGIGRWTAEMFLLFALARPDVFSSGDLALRQGVERLY--P--GE------DWRDVTARWAPYR 204 (225)
T ss_dssp GCTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCCTTCHHHHHHHHHHS--T--TS------CHHHHHHHHTTCH
T ss_pred HHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHhC--C--HH------HHHHHHHHcCCHH
Confidence 12543 89999999999999999999999998 7788 999999999998 1 21 2445566666655
Q ss_pred ChhHHHHH
Q 011579 261 RPGDFNQS 268 (482)
Q Consensus 261 ~~~~~~~~ 268 (482)
.+..+|.+
T Consensus 205 ~~a~~~Lw 212 (225)
T 2yg9_A 205 SLASRYLW 212 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 15
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=99.93 E-value=3.4e-25 Score=214.44 Aligned_cols=147 Identities=17% Similarity=0.192 Sum_probs=120.3
Q ss_pred ChHHHHHHHHHhhhccHHHHHHHHHHHHHhC------CCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCC
Q 011579 115 RAYGVWVSEVMLQQTRVQTVIDYYNRWMTKW------PTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGD 187 (482)
Q Consensus 115 dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~------pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g 187 (482)
|||++||++||+|||+++++..++.+| +.| |||++|++++.++| +++||++ ||++|+++|+.+.+ |
T Consensus 49 d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~la~~~~e~L----r~~G~~~rKa~~i~~~A~~~~~--g 121 (228)
T 3s6i_A 49 EPYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEIRDMDFEIM----RACGFSARKIDSLKSIAEATIS--G 121 (228)
T ss_dssp CHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHHHHSCHHHH----HHHTCCHHHHHHHHHHHHHHHH--T
T ss_pred CHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHHHHHHHc--C
Confidence 799999999999999999999999999 765 99999999999986 8899998 89999999999996 5
Q ss_pred CCCC-----------chhhhhcCCCCcHHHHHHHHHhhcCCe-eeeec-CchhhhHHhhhcccCCCCChHHHHHHHHHHH
Q 011579 188 GFPN-----------TVSDLRKVPGIGNYTAGAIASIAFKEV-VPVVD-GNVIRVLARLKAISANPKDTSTVKNFWKLAT 254 (482)
Q Consensus 188 ~~p~-----------~~~~L~~lpGIG~~TA~~il~fa~~~p-~~~vD-~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~~~ 254 (482)
.+|. .+++|++|||||+|||++||+|+||+| +++|| .|++|++.|+++.+..+ +.+.+.+.++
T Consensus 122 ~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fpvdD~~v~r~~~~~~~~~~~~----~~~~~~~~~e 197 (228)
T 3s6i_A 122 LIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKIP----TKMYVLKHSE 197 (228)
T ss_dssp SSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSSCC----CHHHHHHHHG
T ss_pred CCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEecccHHHHHHHHHHhCCCCCC----CHHHHHHHHH
Confidence 5653 388999999999999999999999998 78885 68999999998876433 2345666666
Q ss_pred hhcCCCChhHHHHHHHHHhh
Q 011579 255 QLVDSCRPGDFNQSLMELGA 274 (482)
Q Consensus 255 ~l~~~~~~~~~~~~l~~~G~ 274 (482)
.+-|-. +...+.|..+++
T Consensus 198 ~w~P~r--~~A~~yLw~~~~ 215 (228)
T 3s6i_A 198 ICAPFR--TAAAWYLWKTSK 215 (228)
T ss_dssp GGTTCH--HHHHHHHHHGGG
T ss_pred HhCCHH--HHHHHHHHHhCc
Confidence 654432 233334444443
No 16
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=99.92 E-value=3.8e-25 Score=221.37 Aligned_cols=152 Identities=18% Similarity=0.260 Sum_probs=128.5
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHh--------------CCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHH
Q 011579 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTK--------------WPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGA 179 (482)
Q Consensus 114 ~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~--------------~pt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a 179 (482)
.|||++||++||+|||+++++..++.+|.++ ||||++|+++++++|.+ .++|| ||++|+++|
T Consensus 113 ~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L~~--~g~g~--Ra~~I~~~A 188 (290)
T 3i0w_A 113 QDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEE--CTAGF--RAKYLKDTV 188 (290)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHHHH--TTCGG--GHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHHHH--cCCch--HHHHHHHHH
Confidence 5799999999999999999999999999875 79999999999999866 35555 999999999
Q ss_pred HHHHHcC--------CCCCCchhhhhcCCCCcHHHHHHHHHhhcCCe-eeeecCchhhhHHhhhcccCCCCChHHHHHHH
Q 011579 180 KMIVAEG--------DGFPNTVSDLRKVPGIGNYTAGAIASIAFKEV-VPVVDGNVIRVLARLKAISANPKDTSTVKNFW 250 (482)
Q Consensus 180 ~~i~~~~--------g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p-~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~ 250 (482)
+.+.++. ...|+.+++|++|||||+|||++|++|++|+| +++||+||+|++.|+|+.+. + +.+++.
T Consensus 189 ~~i~~g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpvD~~v~r~~~rl~~~~~-~----~~~~i~ 263 (290)
T 3i0w_A 189 DRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSLYVAPD-V----SLKKIR 263 (290)
T ss_dssp HHHHTTSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCCCHHHHHHHHHHTSCTT-C----CHHHHH
T ss_pred HHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCcceecHHHHHHHHHhcCCCC-C----CHHHHH
Confidence 9999753 24567899999999999999999999999997 88899999999999998652 2 234566
Q ss_pred HHHHhhcCCCChhHHHHHHHHHhhh
Q 011579 251 KLATQLVDSCRPGDFNQSLMELGAV 275 (482)
Q Consensus 251 ~~~~~l~~~~~~~~~~~~l~~~G~~ 275 (482)
+.+.+.+++ ..+..++.|+.+|+.
T Consensus 264 ~~~~~~~~p-~~~~A~~~Lw~~~R~ 287 (290)
T 3i0w_A 264 DFGREKFGS-LSGFAQQYLFYYARE 287 (290)
T ss_dssp HHHHHHHGG-GHHHHHHHHHHHHHH
T ss_pred HHHHhhcch-HHHHHHHHHHHhhhh
Confidence 666444443 557788899999986
No 17
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=99.90 E-value=8.6e-24 Score=217.24 Aligned_cols=120 Identities=20% Similarity=0.283 Sum_probs=107.9
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHH---------------hCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHH
Q 011579 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMT---------------KWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEG 178 (482)
Q Consensus 114 ~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~---------------~~pt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~ 178 (482)
.|||++||++||+|||++++|..++.+|++ .||||++|++++.++ .|+.+||..||++|+++
T Consensus 150 ~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~~~~~~g~~~~~fPtpe~La~~~~ee---~Lr~~Gl~~RA~~I~~~ 226 (360)
T 2xhi_A 150 QDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEA---HLRKLGLGYRARYVSAS 226 (360)
T ss_dssp CCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHHH---HHHHTTCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHHHcCCHHH---HHHHcCCcHHHHHHHHH
Confidence 579999999999999999999999999988 489999999997654 46889994499999999
Q ss_pred HHHHHHc-CCC--------CC--CchhhhhcCCCCcHHHHHHHHHhhcCCe-eeeecCchhhhHHhhhcc
Q 011579 179 AKMIVAE-GDG--------FP--NTVSDLRKVPGIGNYTAGAIASIAFKEV-VPVVDGNVIRVLARLKAI 236 (482)
Q Consensus 179 a~~i~~~-~g~--------~p--~~~~~L~~lpGIG~~TA~~il~fa~~~p-~~~vD~~v~Rvl~Rl~~~ 236 (482)
|+.+.++ +|. +| +.+++|++|||||+|||++|++|++|+| +++||+||.|++.|++++
T Consensus 227 A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd~fpvDthV~Ri~~r~~gl 296 (360)
T 2xhi_A 227 ARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLMALDKPQAVPVNVHMWHIAQRDYSW 296 (360)
T ss_dssp HHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCCSHHHHHHHHHHHCC
T ss_pred HHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEEecHHHHHHHHHHhCc
Confidence 9999987 454 56 7899999999999999999999999998 899999999999997554
No 18
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=99.90 E-value=5.8e-24 Score=191.86 Aligned_cols=139 Identities=30% Similarity=0.463 Sum_probs=115.5
Q ss_pred eecccccccccccceeeeeeEEEEEecCCCCCCcccC---CCeEEEEecCCCCCCCcccccCccccCCCCChhhHH-HHH
Q 011579 307 VTSYPMKVLKARQRHDVSAACVVEILGGNDESERTQP---DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRR-EAA 382 (482)
Q Consensus 307 ~~~~P~k~~K~k~~~~~vav~Ii~~~~~~~~~~~~~~---~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~-~AL 382 (482)
++.||+|++|++.+.+..+++||. +. +|+|||.||+.+|+|+|+|+||||+++.+|+. + +|+
T Consensus 4 ~~~~Pvk~~k~~~~~~~~~~~vi~-----------~~~~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~---~~~a~ 69 (155)
T 1x51_A 4 GSSGPRKASRKPPREESSATCVLE-----------QPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQL---QRKAL 69 (155)
T ss_dssp SCSCTTSSSCSCTTEEEEEEEEEE-----------EECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHH---HHHHH
T ss_pred hhhCCCcCCCCCCCeEEEEEEEEE-----------ecCCCCCEEEEEECCCCCCCCceecCCccccCCCCCH---HHHHH
Confidence 578999999988888877777774 22 58999999999999999999999999988655 5 899
Q ss_pred HHHHHhhcC-CCCCCCcccccccccccEEEEcCceEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCC
Q 011579 383 ECFLKKSFN-LDPRNNCSIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLT 461 (482)
Q Consensus 383 ~rel~Eelg-i~~~~~~~~~~~~~l~~v~H~fth~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp 461 (482)
.||+.||+| +.+. ....++.+.|.|+|+++++++|.+. +.++.. ...++.+++|++.+++.+++||
T Consensus 70 ~REl~EE~g~l~~~------~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~e~~~~~W~~~~el~~~~~~ 136 (155)
T 1x51_A 70 LQELQRWAGPLPAT------HLRHLGEVVHTFSHIKLTYQVYGLA--LEGQTP-----VTTVPPGARWLTQEEFHTAAVS 136 (155)
T ss_dssp HHHHHHHSCCCCST------TCEECCCBCCBCSSCEEEEEEEEEE--CSSCCC-----CCCCCTTEEEEEHHHHHHSCCC
T ss_pred HHHHHHHhCCccee------eeeecceEEEecCCccEEEEEEEEE--EcCCCC-----CCCCCCccEEccHHHhhhcCCC
Confidence 999999999 7765 4467888999999999999998875 333221 2245678999999999999999
Q ss_pred hHhHHHHhccC
Q 011579 462 SGVRKVMMGKS 472 (482)
Q Consensus 462 ~a~~kil~~L~ 472 (482)
++++++++.+.
T Consensus 137 ~~~~~~l~~~~ 147 (155)
T 1x51_A 137 TAMKKVFRVYQ 147 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998874
No 19
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=99.89 E-value=5.9e-23 Score=204.82 Aligned_cols=142 Identities=22% Similarity=0.223 Sum_probs=119.4
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHH-------------hCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHH
Q 011579 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMT-------------KWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGA 179 (482)
Q Consensus 114 ~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~-------------~~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a 179 (482)
.|||++||++||+|||+++++..++.+|.+ .||||++|+++++++| +++||++ ||++|+++|
T Consensus 111 ~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~L----r~~G~~~~ra~~i~~~A 186 (282)
T 1mpg_A 111 VDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQAL----KALGMPLKRAEALIHLA 186 (282)
T ss_dssp SCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHH----HHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCCCCCCcccCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHHH
Confidence 689999999999999999999999999964 4799999999999986 8999987 999999999
Q ss_pred HHHHHc--CCCCC----CchhhhhcCCCCcHHHHHHHHHhhcCCe-eeeecCchhhhHHhhhcccCCCCChHHHHHHHHH
Q 011579 180 KMIVAE--GDGFP----NTVSDLRKVPGIGNYTAGAIASIAFKEV-VPVVDGNVIRVLARLKAISANPKDTSTVKNFWKL 252 (482)
Q Consensus 180 ~~i~~~--~g~~p----~~~~~L~~lpGIG~~TA~~il~fa~~~p-~~~vD~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~~ 252 (482)
+.+.++ ++..+ +.+++|++|||||+|||++|++|++|+| +++||.|+.| +++. .. +.+++.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~~d~~pvdd~~~r--~~l~----~~----~~~~~~~~ 256 (282)
T 1mpg_A 187 NAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIK--QRFP----GM----TPAQIRRY 256 (282)
T ss_dssp HHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTCHHHH--HHST----TC----CHHHHHHH
T ss_pred HHHHcCCCCccccCCHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCcCccccHHHH--HHhc----cC----CHHHHHHH
Confidence 999986 34444 3489999999999999999999999998 8888888877 5552 11 23456777
Q ss_pred HHhhcCCCChhHHHHHH
Q 011579 253 ATQLVDSCRPGDFNQSL 269 (482)
Q Consensus 253 ~~~l~~~~~~~~~~~~l 269 (482)
++.+.|...+..+|.+.
T Consensus 257 ~~~~~P~r~~a~~~lw~ 273 (282)
T 1mpg_A 257 AERWKPWRSYALLHIWY 273 (282)
T ss_dssp HGGGTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 78887777777777654
No 20
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=99.87 E-value=2.5e-22 Score=201.46 Aligned_cols=145 Identities=22% Similarity=0.190 Sum_probs=116.2
Q ss_pred CChHHHHHHHHHhhhccHHHHHHHHHHHHHh--------------CCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHH
Q 011579 114 KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTK--------------WPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEG 178 (482)
Q Consensus 114 ~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~--------------~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~ 178 (482)
.|||++||++||+|||+++++..++.+|.++ ||||++|+++++++| +++||++ ||++|+++
T Consensus 116 ~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~la~~~~~~L----r~~G~~~rKa~~i~~~ 191 (295)
T 2jhn_A 116 MSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVEGL----RECGLSRRKAELIVEI 191 (295)
T ss_dssp SSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHH----HHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHH
Confidence 5799999999999999999999999999987 899999999999885 8999998 89999999
Q ss_pred HHHHHHc-CC--CCCC--chhhhhcCCCCcHHHHHHHHHhhcCCe-eeee-cCchhhhHHhhhcccCCCCChHHHHHHHH
Q 011579 179 AKMIVAE-GD--GFPN--TVSDLRKVPGIGNYTAGAIASIAFKEV-VPVV-DGNVIRVLARLKAISANPKDTSTVKNFWK 251 (482)
Q Consensus 179 a~~i~~~-~g--~~p~--~~~~L~~lpGIG~~TA~~il~fa~~~p-~~~v-D~~v~Rvl~Rl~~~~~~~~~~~~~~~l~~ 251 (482)
|+. .. ++ .+|. .+++|++|||||+|||++|++|++| | +++| |.|++|++.|+++.... ..+.+++.+
T Consensus 192 A~~--g~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~~lg-~d~fpvdD~~~rr~~~~~~g~~~~---~~~~~~~~~ 265 (295)
T 2jhn_A 192 AKE--ENLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALG-KNVFPADDLGVRRAVSRLYFNGEI---QSAEKVREI 265 (295)
T ss_dssp HTC--SSGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHTTC-CCCCCTTCHHHHHHHHHHHSTTCC---CCHHHHHHH
T ss_pred HHC--CCHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHHccC-CCcccchHHHHHHHHHHHhcCCCC---CCCHHHHHH
Confidence 998 22 21 3454 4899999999999999999999999 8 7888 56667799999765431 124456667
Q ss_pred HHHhhcCCCChhHHHHH
Q 011579 252 LATQLVDSCRPGDFNQS 268 (482)
Q Consensus 252 ~~~~l~~~~~~~~~~~~ 268 (482)
.++.+-|...+..+|.+
T Consensus 266 ~~e~~~p~r~~a~~~Lw 282 (295)
T 2jhn_A 266 ARERFGRFARDILFYLF 282 (295)
T ss_dssp HHHHTGGGHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHH
Confidence 77766554444444433
No 21
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=99.86 E-value=4.3e-22 Score=177.64 Aligned_cols=145 Identities=15% Similarity=0.235 Sum_probs=107.1
Q ss_pred eecccccccccccc-----eeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHH
Q 011579 307 VTSYPMKVLKARQR-----HDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREA 381 (482)
Q Consensus 307 ~~~~P~k~~K~k~~-----~~~vav~Ii~~~~~~~~~~~~~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~A 381 (482)
+++||+|.+|++.+ ...++++|+ ..+|+||+.||+.++.++|+|+||||.++.+|+. ++|
T Consensus 2 ~~~lP~k~~kk~~~~~~~~~~~~~~~i~------------~~~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~---~~a 66 (153)
T 3ees_A 2 TDDSAVESKQKKSKIRKGHWIPVVAGFL------------RKDGKILVGQRPENNSLAGQWEFPGGKIENGETP---EEA 66 (153)
T ss_dssp ------------------CEEEEEEEEE------------EETTEEEEEECCTTSTTTTCEECSEEECCTTCCH---HHH
T ss_pred CCCccccCccccccccCCceEEEEEEEE------------EECCEEEEEEeCCCCCCCCeEECCceeeCCCCCH---HHH
Confidence 46789988887665 444555444 4578999999999999999999999999999877 899
Q ss_pred HHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCC
Q 011579 382 AECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLT 461 (482)
Q Consensus 382 L~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp 461 (482)
+.||+.||+|+.+. ....++.+.|.|+|.++.+++|.+.+ ..+ . +...++.+++|++.+++.+++++
T Consensus 67 a~RE~~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~-----~~~~e~~~~~W~~~~el~~~~~~ 133 (153)
T 3ees_A 67 LARELNEELGIEAE------VGELKLACTHSYGDVGILILFYEILY-WKG-E-----PRAKHHMMLEWIHPEELKHRNIP 133 (153)
T ss_dssp HHHHHHHHHSCEEE------CCCEEEEEEEEETTEEEEEEEEEECE-EES-C-----CCCSSSSEEEEECGGGGGGSCCC
T ss_pred HHHHHHHHHCCccc------cCceEEEEEEecCCCeEEEEEEEEEE-CCC-C-----cCCCccceEEEecHHHhhhCCCC
Confidence 99999999999876 44677889999999999999988853 233 1 22367789999999999999999
Q ss_pred hHhHHHHhccCCCCCCCC
Q 011579 462 SGVRKVMMGKSPPISHDK 479 (482)
Q Consensus 462 ~a~~kil~~L~~~~~~~~ 479 (482)
++++++++.+..-.++.|
T Consensus 134 ~~~~~~l~~~~~~~~~~w 151 (153)
T 3ees_A 134 EANRKILHKIYKALGLEW 151 (153)
T ss_dssp HHHHTTHHHHHHHTTCC-
T ss_pred cchHHHHHHHHHhhcccc
Confidence 999999998765555444
No 22
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=99.81 E-value=1.7e-19 Score=162.73 Aligned_cols=138 Identities=16% Similarity=0.158 Sum_probs=102.1
Q ss_pred cccccccccccceeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHh
Q 011579 309 SYPMKVLKARQRHDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKK 388 (482)
Q Consensus 309 ~~P~k~~K~k~~~~~vav~Ii~~~~~~~~~~~~~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~E 388 (482)
.=|++.++++.....+ ++++. +.+|+||+.||+.++.|+|+|+||||.++.+|+. .+|+.||+.|
T Consensus 17 ~gP~~~~~~~~~~~~~-~~~i~-----------~~~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~---~~aa~RE~~E 81 (158)
T 3hhj_A 17 QGPGSMPIKSSLLIVV-ACALL-----------DQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETP---EASLIRELEE 81 (158)
T ss_dssp ----------CEEEEE-EEEEB-----------CTTSEEEEEECCCTTSCCCCCBCCEEECCTTCCH---HHHHHHHHHH
T ss_pred CCCccCCCCCceEEEE-EEEEE-----------eCCCEEEEEEeCCCCCCCCEEECCceeecCCCCH---HHHHHHHHHH
Confidence 4476666654444333 44442 5678999999999999999999999999999877 8999999999
Q ss_pred hcCCCCCCCcccccccccccEEEEcCceEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHH
Q 011579 389 SFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVM 468 (482)
Q Consensus 389 elgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil 468 (482)
|+|+.+... ....++.+.|.|+|+++.+++|.+.. .++. +...++.+++|++.+++.++++++++++++
T Consensus 82 EtGl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~e~~~~~W~~~~el~~~~~~~~~~~il 150 (158)
T 3hhj_A 82 ELGVHVQAD----NLFPLTFASHGYETFHLLMPLYFCSH--YKGV-----AQGREGQNLKWIFINDLDKYPMPEADKPLV 150 (158)
T ss_dssp HHCCBCCGG----GCEEEEEEEEECSSCEEEEEEEEESC--CBSC-----CCCTTSCEEEEEEGGGGGGSCCCTTTHHHH
T ss_pred HhCcEeecc----eEEEEEEEeeccCCcEEEEEEEEEEE--CCCc-----cCCccccceEEEcHHHHhhCCCCcchHHHH
Confidence 999988610 11346778899999999999888742 2221 223677889999999999999999999999
Q ss_pred hccC
Q 011579 469 MGKS 472 (482)
Q Consensus 469 ~~L~ 472 (482)
+.+.
T Consensus 151 ~~~~ 154 (158)
T 3hhj_A 151 QVLK 154 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 23
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=99.79 E-value=2.9e-19 Score=157.10 Aligned_cols=124 Identities=17% Similarity=0.194 Sum_probs=103.1
Q ss_pred ceeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcc
Q 011579 320 RHDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCS 399 (482)
Q Consensus 320 ~~~~vav~Ii~~~~~~~~~~~~~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~ 399 (482)
+++.++++|| ..+|+||+.||+.++.++|+|+||||.++.+|++ ++|+.||+.||+|+.+.
T Consensus 7 ~~~~~~~~ii------------~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~---~~aa~RE~~EE~Gl~~~---- 67 (140)
T 2rrk_A 7 KMIEVVAAII------------ERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQ---RQALVRELREELGIEAT---- 67 (140)
T ss_dssp CEEEEEEEEE------------EETTEEEEEECCSSCSCCCCEECCEEECCTTSCH---HHHHHHHHHHHSCEEEE----
T ss_pred ccceEEEEEE------------EcCCEEEEEEcCCCCCCCCEEECCceecCCCCCH---HHHHHHHHHHHHCCeee----
Confidence 3455666666 3578999999999999999999999999999877 89999999999999875
Q ss_pred cccccccccEEEEcCceEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 400 IILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 400 ~~~~~~l~~v~H~fth~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
....++.+.|.|+|+++.+++|.+.+ ..+ . +...++.++.|++.+++.+++++++++++++.+
T Consensus 68 --~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~-----~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~ 130 (140)
T 2rrk_A 68 --VGEYVASHQREVSGRIIHLHAWHVPD-FHG-T-----LQAHEHQALVWCSPEEALQYPLAPADIPLLEAF 130 (140)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEEEESE-EEE-C-----CCCSSCSCEEEECHHHHTTSCCCTTHHHHHHHH
T ss_pred --cccEEEEEEEecCCcEEEEEEEEEEe-eCC-C-----cCCCccceeEEeCHHHHhhCCCChhHHHHHHHH
Confidence 44678889999999999999888753 222 1 123567789999999999999999999999876
No 24
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=99.79 E-value=4.8e-19 Score=156.61 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=98.6
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
+.+|++|+.||+.++.++|+|+||||.++.+|+. .+|+.||+.||+|+.+... ....+..+.|.|+|+++.++
T Consensus 17 ~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~---~~aa~RE~~EE~Gl~~~~~----~~~~~~~~~~~~~~~~~~~~ 89 (144)
T 3r03_A 17 DPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETP---EAALVRELAEELGVDTRAS----CLAPLAFASHSYDTFHLLMP 89 (144)
T ss_dssp CTTSCEEEEECCTTSSSTTCEECSEEECCTTCCH---HHHHHHHHHHHHCCBCCGG----GCEEEEEEEEECSSSEEEEE
T ss_pred cCCCEEEEEEeCCCCCCCCcEECCCcEecCCCCH---HHHHHHHHHHHhCceeecc----ceEEEEeeeccCCCeEEEEE
Confidence 5678999999999999999999999999999877 8999999999999988610 11456778999999999999
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccCC
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKSP 473 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~ 473 (482)
+|.+.+ .++. +...++.+++|++.+++.+++|+++++++++.+..
T Consensus 90 ~~~~~~--~~~~-----~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 134 (144)
T 3r03_A 90 LYACRS--WRGR-----ATAREGQTLAWVRAERLREYPMPPADLPLIPILQD 134 (144)
T ss_dssp EEEECC--CBSC-----CCCCSSCEEEEECGGGGGGSCCCTTTTTHHHHHHH
T ss_pred EEEEEe--cCCc-----cCCCCcceEEEEeHHHhccCCCCcchHHHHHHHhC
Confidence 998752 2221 22367788999999999999999999999998743
No 25
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=99.79 E-value=2.9e-19 Score=154.63 Aligned_cols=115 Identities=12% Similarity=0.082 Sum_probs=98.3
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
+.+|++|+.||+.++.++|+|+||||.++.+|+. ++|+.||+.||+|+.+. ....++.+.|.|+|.++.++
T Consensus 13 ~~~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~---~~aa~RE~~EE~G~~~~------~~~~~~~~~~~~~~~~~~~~ 83 (129)
T 1mut_A 13 NENNEIFITRRAADAHMANKLEFPGGKIEMGETP---EQAVVRELQEEVGITPQ------HFSLFEKLEYEFPDRHITLW 83 (129)
T ss_dssp ETTTEEEEEECSSCCSSSCCEECCCCCSSSCSST---THHHHHHHHTTTCCSSC------EECCCCCCBCCCSSCEEECC
T ss_pred ecCCEEEEEEeCCCCCCCCeEECCccCcCCCCCH---HHHHHHHHHHHhCCccc------cceEEEEEEEecCCceEEEE
Confidence 5678999999999999999999999999999877 79999999999999976 45678888999999999888
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccC
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKS 472 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~ 472 (482)
+|.+.. .++. +...++.+++|++.+++.+++||++++++++.+.
T Consensus 84 ~~~~~~--~~~~-----~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~l~ 127 (129)
T 1mut_A 84 FWLVER--WEGE-----PWGKEGQPGEWMSLVGLNADDFPPANEPVIAKLK 127 (129)
T ss_dssp CEEEEE--CSSC-----CCCCSSCCCEEEESSSCCTTTSCTTCHHHHHHHT
T ss_pred EEEEEc--cCCc-----cCCcccceeEEeCHHHcccccCCchhHHHHHHHh
Confidence 888753 3321 2235677899999999999999999999998763
No 26
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=99.76 E-value=8.9e-19 Score=154.89 Aligned_cols=115 Identities=13% Similarity=0.154 Sum_probs=93.3
Q ss_pred CCCeEEEEecCCCCC--CCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEE
Q 011579 343 PDGVFILVKRRDEGL--LAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKV 420 (482)
Q Consensus 343 ~~gkvLl~KRp~~gl--laGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L 420 (482)
.+|+||+.||+.++. ++|+|+||||.++.+|++ ++|+.||+.||+|+++. ....++.+.|.|+|.++.+
T Consensus 15 ~~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~---~~aa~REl~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~ 85 (140)
T 3gwy_A 15 LGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESL---QEALQREIMEEMDYVIE------VGEKLLTVHHTYPDFEITM 85 (140)
T ss_dssp ETTEEEEEEC---------CCEECSEEECCTTCCH---HHHHHHHHHHHHCCCEE------EEEEEEEEECCCSSCCEEE
T ss_pred eCCEEEEEEecCCCCCCCCCeEECCCccCCCCCCH---HHHHHHHHHHhhCcEEE------eceEEEEEEEEeCCceEEE
Confidence 378999999999988 999999999999999877 89999999999999986 5678888999999999999
Q ss_pred EEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccCC
Q 011579 421 HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKSP 473 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~ 473 (482)
++|.+.+ .++. +...|..+++|++.+++.+++|+++++++++.+..
T Consensus 86 ~~f~~~~--~~~~-----~~~~E~~~~~W~~~~el~~~~~~~~~~~il~~~~~ 131 (140)
T 3gwy_A 86 HAFLCHP--VGQR-----YVLKEHIAAQWLSTREMAILDWAEADKPIVRKISE 131 (140)
T ss_dssp EEEEEEE--CCSC-----CCCCSSCEEEEECHHHHTTSCBCGGGHHHHHHHHC
T ss_pred EEEEEEe--cCCc-----ccccccceeEeccHHHHhhCCCCcccHHHHHHHHh
Confidence 9998853 3322 22357788999999999999999999999998744
No 27
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=99.75 E-value=7.6e-18 Score=151.10 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=98.3
Q ss_pred cCCCeEEEEecCCC-CCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEE
Q 011579 342 QPDGVFILVKRRDE-GLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKV 420 (482)
Q Consensus 342 ~~~gkvLl~KRp~~-gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L 420 (482)
+.+|+||+.||+.+ +.++|+|+||||.++.||++ ++|+.||+.||+|+.+. ....++.+.|.|+|..+.+
T Consensus 17 ~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~---~~aa~REl~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~ 87 (153)
T 3grn_A 17 NEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESL---KEGVAREVWEETGITMV------PGDIAGQVNFELTEKKVIA 87 (153)
T ss_dssp CTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCH---HHHHHHHHHHHHCCCCC------CCSEEEEEEEECSSCEEEE
T ss_pred cCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCH---HHHHHhhhhhhhCcEee------cceEEEEEEEecCCceEEE
Confidence 55789999999987 89999999999999999877 89999999999999986 4567888999999999988
Q ss_pred EEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCC-CChHhHHHHhcc
Q 011579 421 HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMG-LTSGVRKVMMGK 471 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~-fp~a~~kil~~L 471 (482)
++|.+.. ..+ ... ...++.+++|++.+++.+++ ++++++++++.+
T Consensus 88 ~~~~~~~-~~~-~~~----~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~~l 133 (153)
T 3grn_A 88 IVFDGGY-VVA-DVK----LSYEHIEYSWVSLEKILGMETLPAYFRDFFERF 133 (153)
T ss_dssp EEEEEEE-CCC-CCC----CCTTEEEEEEECHHHHTTCSSSCHHHHHHHHHH
T ss_pred EEEEEEe-cCC-cEe----cCCCcceEEEEEHHHhhhcccchHHHHHHHHHH
Confidence 8888753 233 211 12567789999999999999 999999999987
No 28
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=99.66 E-value=2.7e-16 Score=142.76 Aligned_cols=112 Identities=8% Similarity=-0.107 Sum_probs=93.5
Q ss_pred CeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEc--CceEEEEEE
Q 011579 345 GVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF--SHIRLKVHV 422 (482)
Q Consensus 345 gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~f--th~~l~L~~ 422 (482)
|+||+.||+ ++.|+|+|+||||+++.+|++ ++|+.||+.||+|+.+. ....++.+.|.+ ++..+.+++
T Consensus 23 ~~vLL~~r~-~~~~~g~w~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~~ 92 (161)
T 3exq_A 23 QRVLVEDKV-NVPWKAGHSFPGGHVEVGEPC---ATAAIREVFEETGLRLS------GVTFCGTCEWFDDDRQHRKLGLL 92 (161)
T ss_dssp CCEEEECCC-CCTTTCSBBCCCCBCCTTSCH---HHHHHHHHHHHHCCEES------CCEEEEEEEEECSSCSSEEEEEE
T ss_pred CEEEEEEcc-CCCCCCCEEccceecCCCCCH---HHHHHHHHHHhhCcEec------CCcEEEEEecccCCCCeEEEEEE
Confidence 699999998 678999999999999999877 89999999999999876 456788888988 677777777
Q ss_pred EEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccCC
Q 011579 423 ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKSP 473 (482)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~ 473 (482)
|.+.. ..+. +...+..+++|++++++.++++++.++++++.+..
T Consensus 93 ~~~~~-~~~~------~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 136 (161)
T 3exq_A 93 YRASN-FTGT------LKASAEGQLSWLPITALTRENSAASLPEFLQVFTG 136 (161)
T ss_dssp EEECC-EESC------CCGGGTTTEEEECGGGCCTTTBCTTHHHHHHHHTT
T ss_pred EEEec-cCCc------cCCCccceEEEeeHHHhhhCccChHHHHHHHHHhh
Confidence 77742 2332 22356678999999999999999999999998765
No 29
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=99.66 E-value=1.7e-16 Score=144.81 Aligned_cols=147 Identities=15% Similarity=0.092 Sum_probs=90.9
Q ss_pred ccCCCCCCCCCCCcccChhhhccCCCCCcceecccccccccccceeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCC
Q 011579 277 CTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQRHDVSAACVVEILGGNDESERTQPDGVFILVKRRDEG 356 (482)
Q Consensus 277 C~~~~P~C~~Cpl~~~C~~~~~~~~~~~~~~~~~P~k~~K~k~~~~~vav~Ii~~~~~~~~~~~~~~~gkvLl~KRp~~g 356 (482)
|.+.+|.|..||.+..|.... ....+++|| ..+|+||+.||..+
T Consensus 1 ms~~~~~~~~~~~~~~~~~~~-----------------------~~~~v~~ii------------~~~~~vLL~~r~~~- 44 (171)
T 3id9_A 1 MSLEGFICKFNRKRRLYIENI-----------------------MQVRVTGIL------------IEDEKVLLVKQKVA- 44 (171)
T ss_dssp --------------------------------------------CEEEEEEEE------------EETTEEEEEECSST-
T ss_pred CCccccccccChhhhhccCCc-----------------------eEEEEEEEE------------EECCEEEEEEEECC-
Confidence 356679999999877764211 122333444 23689999999874
Q ss_pred CCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEEEEEEEEEEeCCcccc
Q 011579 357 LLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKW 436 (482)
Q Consensus 357 llaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~~~~~~~~~~~~~~~~ 436 (482)
+|+|+||||+++.||++ ++|+.||+.||+|+++. ....++.+.|.+++......+|.+.. ..+.....
T Consensus 45 --~~~w~~PgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 112 (171)
T 3id9_A 45 --NRDWSLPGGRVENGETL---EEAMIREMREETGLEVK------IKKLLYVCDKPDASPSLLHITFLLER-IEGEITLP 112 (171)
T ss_dssp --TCCEECCEEECCTTCCH---HHHHHHHHHHHHCCCEE------EEEEEEEEEETTSSSCEEEEEEEEEE-C-------
T ss_pred --CCeEECCCccCCCCCCH---HHHHHHHHHHHHCCccc------cceEEEEEcccCCCCcEEEEEEEEEE-cCCcccCC
Confidence 89999999999999877 89999999999999975 45667777787877766556666642 22221100
Q ss_pred -cccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 437 -VEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 437 -~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
......|..+++|++.+++.+++|+++++++++..
T Consensus 113 ~~~~~~~E~~~~~w~~~~el~~~~~~~~~~~~l~~~ 148 (171)
T 3id9_A 113 SNEFDHNPIHDVQMVPINELSYYGFSETFINLISGG 148 (171)
T ss_dssp ------CCCCCEEEEETGGGGGGTCCTTCSHHHHHG
T ss_pred ccCCCcCeeeeEEEEeHHHHhhCCCCHHHHHHHHHh
Confidence 01123577889999999999999999999999876
No 30
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=99.66 E-value=5.2e-16 Score=140.84 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=80.3
Q ss_pred cCCCeEEEEecC-CCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccc------cEEEEcC
Q 011579 342 QPDGVFILVKRR-DEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVG------EFVHIFS 414 (482)
Q Consensus 342 ~~~gkvLl~KRp-~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~------~v~H~ft 414 (482)
..+|++||.||+ .++.++|+|+||||+++.||++ ++|+.||+.||+|+++. ....++ ...|.|+
T Consensus 36 ~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~ 106 (165)
T 3oga_A 36 QNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERI---EEALRREIREELGEQLI------LSDITPWTFRDDIRIKTYA 106 (165)
T ss_dssp EETTEEEEEEECC------CCEECCCEECCTTCCH---HHHHHHHHHHHHCSSCC------EEEEEEEEEEEEEEEEEC-
T ss_pred eCCCEEEEEEecCCCCCCCCeEECCccccCCCCCH---HHHHHHHHHHHhCCCcc------ccceeeeeeecceeeEecC
Confidence 457899999998 4578999999999999999887 89999999999999875 222222 1257888
Q ss_pred ceEEE-----EEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 415 HIRLK-----VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 415 h~~l~-----L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
+.... +.+|.+. ..++.. ..+.|+.+++|++.+++.+++++++++++++..
T Consensus 107 ~~~~~~~~~~~~~~~~~--~~~~~~----~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~ 162 (165)
T 3oga_A 107 DGRQEEIYMIYLIFDCV--SANRDI----CINDEFQDYAWVKPEELALYDLNVATRHTLALK 162 (165)
T ss_dssp -CCEEEEEEEEEEEEEE--ESCCCC----CCCTTEEEEEEECGGGGGGSCBCHHHHHHHHHT
T ss_pred CCCceeEEEEEEEEEee--ccCCCc----cCCchheeeEEccHHHHhhCCCCHHHHHHHHHh
Confidence 77543 3344442 222211 112567789999999999999999999999865
No 31
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=99.64 E-value=5.6e-16 Score=143.16 Aligned_cols=115 Identities=16% Similarity=0.071 Sum_probs=94.3
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCc--eEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH--IRLK 419 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth--~~l~ 419 (482)
..+|+||+.||. .+.++|+|+||||.++.||++ ++|+.||+.||+|+++. ....++.+.|.|++ ..+.
T Consensus 33 ~~~~~vLL~~r~-~~~~~g~W~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~l~~~~~~~~~~~~~~~ 102 (176)
T 3q93_A 33 LQPQRVLLGMKK-RGFGAGRWNGFGGKVQEGETI---EDGARRELQEESGLTVD------ALHKVGQIVFEFVGEPELMD 102 (176)
T ss_dssp ECSSEEEEEEEC-SSTTTTSEECEEEECCTTSCH---HHHHHHHHHHHHSCEES------CCEEEEEEEEEETTCSCEEE
T ss_pred EeCCEEEEEEEc-CCCCCCeEECceecCCCCCCH---HHHHHHHHHHHHCCcce------eeEEEEEEEEEcCCCCcEEE
Confidence 457899999995 457899999999999999877 89999999999999986 45788899999987 5666
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccCC
Q 011579 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKSP 473 (482)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~ 473 (482)
+++|.+.. ..+. +...++.+++|++++++..+++++++++++..+..
T Consensus 103 ~~~f~~~~-~~~~------~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 149 (176)
T 3q93_A 103 VHVFCTDS-IQGT------PVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQ 149 (176)
T ss_dssp EEEEEESC-EESC------CCCCSSEEEEEEETTCCCGGGBCTTHHHHHHHHHT
T ss_pred EEEEEEEC-CCCC------cCCCcceeeEEeeHHHccccccCcchHHHHHHHHc
Confidence 77777742 2331 22356778899999999999999999999988743
No 32
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=99.60 E-value=2.1e-15 Score=131.30 Aligned_cols=108 Identities=16% Similarity=0.179 Sum_probs=89.4
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcC----ceEEE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS----HIRLK 419 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~ft----h~~l~ 419 (482)
+|+||+.||+. |+|+||||.++.||++ .+|+.||+.||+|+++. ....++.+.|.|+ |.+..
T Consensus 14 ~~~vLl~~r~~-----~~w~~PgG~ve~gE~~---~~aa~RE~~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~~~~ 79 (134)
T 2pbt_A 14 DGEVLLIKTPS-----NVWSFPKGNIEPGEKP---EETAVREVWEETGVKGE------ILDYIGEIHYWYTLKGERIFKT 79 (134)
T ss_dssp TTEEEEEECTT-----SCEECCEEECCTTCCH---HHHHHHHHHHHHSEEEE------EEEEEEEEEEEEEETTEEEEEE
T ss_pred CCEEEEEEeCC-----CcEECCccccCCCCCH---HHHHHHHHHHHHCCccE------EeeeeeEEEEEeeCCCcEEEEE
Confidence 67999999975 9999999999999877 89999999999999876 4578888889998 67777
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
+++|.+... .+ ... +. .++.+++|++.+++.++.++++++++++.+
T Consensus 80 ~~~~~~~~~-~~-~~~---~~-~e~~~~~W~~~~el~~~~~~~~~~~~l~~~ 125 (134)
T 2pbt_A 80 VKYYLMKYK-EG-EPR---PS-WEVKDAKFFPIKEAKKLLKYKGDKEIFEKA 125 (134)
T ss_dssp EEEEEEEEE-EE-CCC---CC-TTSSEEEEEEHHHHHHHCCSHHHHHHHHHH
T ss_pred EEEEEEEec-CC-CcC---CC-cceeEEEEEcHHHHHhhhcchhHHHHHHHH
Confidence 888887532 22 111 12 378899999999999999999999998764
No 33
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=99.60 E-value=3e-15 Score=137.67 Aligned_cols=115 Identities=12% Similarity=0.116 Sum_probs=94.0
Q ss_pred cCCCeEEEEecCCCC-CCCccccc-CccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEE
Q 011579 342 QPDGVFILVKRRDEG-LLAGLWEF-PSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLK 419 (482)
Q Consensus 342 ~~~gkvLl~KRp~~g-llaGLWEF-Pggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~ 419 (482)
+.+|++|+.+|...+ .++|+|+| |||.++.||++ ++|+.||+.||+|+.+. ....++.+.|.+++.++.
T Consensus 46 ~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~---~~aa~REl~EEtGl~~~------~~~~l~~~~~~~~~~~~~ 116 (180)
T 2fkb_A 46 DGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQL---LESARREAEEELGIAGV------PFAEHGQFYFEDKNCRVW 116 (180)
T ss_dssp CSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCH---HHHHHHHHHHHHCCBSC------CCEEEEEEEEEETTEEEE
T ss_pred CCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCH---HHHHHHHHHHHHCCCcc------ceEEEEEEEecCCCceEE
Confidence 557899999997654 56999999 99999999887 89999999999999875 345678889999999888
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccC--CCChHhHHHHhcc
Q 011579 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM--GLTSGVRKVMMGK 471 (482)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~--~fp~a~~kil~~L 471 (482)
+++|.+. ..+.. .....++.++.|++.+++.++ +|++.+++++..+
T Consensus 117 ~~~f~~~--~~~~~----~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~ 164 (180)
T 2fkb_A 117 GALFSCV--SHGPF----ALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALW 164 (180)
T ss_dssp EEEEEEE--CCCCC----CCCTTTEEEEEEECHHHHHTTGGGBCHHHHHHHHHH
T ss_pred EEEEEEe--cCCCc----CCChhHhheEEEecHHHHHHHHHHhCCcHHHHHHHH
Confidence 8888874 33321 123456788999999999999 8999999888765
No 34
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=99.59 E-value=3.1e-15 Score=128.99 Aligned_cols=110 Identities=11% Similarity=0.036 Sum_probs=91.2
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
+.+|++|+.||+. |+|+||||.++.+|++ ++|+.||+.||+|+.+. ....++.+.|.++|.+..++
T Consensus 11 ~~~~~vLl~~r~~-----g~w~~PgG~ve~gE~~---~~aa~RE~~EE~Gl~~~------~~~~~~~~~~~~~~~~~~~~ 76 (126)
T 1vcd_A 11 NAKREVLLLRDRM-----GFWVFPKGHPEPGESL---EEAAVREVWEETGVRAE------VLLPLYPTRYVNPKGVEREV 76 (126)
T ss_dssp CTTSCEEEEECTT-----SCEECCEECCCTTCCH---HHHHHHHHHHHHCCEEE------EEEEEEEEEEECTTSCEEEE
T ss_pred cCCCEEEEEEECC-----CCccCCcCcCCCCCCH---HHHHHHHHHHhhCcEee------eccEEeEEEEecCCceEEEE
Confidence 5578999999975 7899999999999877 89999999999999875 45678888999999988888
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
+|.+.. ..+. . ....++.+++|++.+++.++.++++++++++.+
T Consensus 77 ~~~~~~-~~~~-~----~~~~e~~~~~w~~~~el~~~~~~~~~~~~l~~~ 120 (126)
T 1vcd_A 77 HWFLMR-GEGA-P----RLEEGMTGAGWFSPEEARALLAFPEDLGLLEVA 120 (126)
T ss_dssp EEEEEE-EESC-C----CCCTTCCEEEEECHHHHHHHBCSHHHHHHHHHH
T ss_pred EEEEEE-cCCC-C----CCCcceeeeEEcCHHHHHHhhcChhHHHHHHHH
Confidence 888753 2332 1 123577899999999999999999999988765
No 35
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=99.58 E-value=3.7e-15 Score=133.46 Aligned_cols=109 Identities=13% Similarity=0.065 Sum_probs=84.3
Q ss_pred EEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcC-ceEEEEEEEEE
Q 011579 347 FILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS-HIRLKVHVELL 425 (482)
Q Consensus 347 vLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~ft-h~~l~L~~~~~ 425 (482)
+|+.+|+.++ |+| |+||||+++.+|++ ++|+.||+.||+|+++. ....++.+.|.++ |.+..+++|.+
T Consensus 25 vLl~~r~~~~-~~g-w~lPgG~ve~gE~~---~~aa~RE~~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (155)
T 2b06_A 25 MQYRAPENNR-WSG-YAFPGGHVENDEAF---AESVIREIYEETGLTIQ------NPQLVGIKNWPLDTGGRYIVICYKA 93 (155)
T ss_dssp EEEEC------CCE-EECCCCBCCTTSCH---HHHHHHHHHHHHSEEEE------SCEEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEEECCCCC-CCC-EeccceecCCCCCH---HHHHHHHHHHHhCcccc------CCcEEEEEeeccCCCceEEEEEEEE
Confidence 9999998877 889 99999999999887 89999999999999875 4456677777774 67777888877
Q ss_pred EEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccCC
Q 011579 426 VLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKSP 473 (482)
Q Consensus 426 ~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~ 473 (482)
.. ..+ . +...++.+++|++.+++.+++++++++++++.+..
T Consensus 94 ~~-~~~-~-----~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 134 (155)
T 2b06_A 94 TE-FSG-T-----LQSSEEGEVSWVQKDQIPNLNLAYDMLPLMEMMEA 134 (155)
T ss_dssp CE-EEE-C-----CCCBTTBEEEEEEGGGGGGSCBCTTHHHHHHHHHC
T ss_pred Ee-cCC-C-----CCCCcceeeEEeeHHHhhhCCCChhHHHHHHHHhC
Confidence 53 222 1 12256788999999999999999999999987743
No 36
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=99.58 E-value=7.9e-15 Score=132.46 Aligned_cols=114 Identities=18% Similarity=0.139 Sum_probs=93.1
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEc--CceEEEEE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF--SHIRLKVH 421 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~f--th~~l~L~ 421 (482)
+|+|||.||.... ++|+|+||||.++.+|++ ++|+.||+.||+|+++. ....++.+.|.| ++.++.++
T Consensus 39 ~~~vLL~~r~~~~-~~~~w~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~ 108 (157)
T 4dyw_A 39 DGRILLIKRKRAP-EAGCWGLPGGKVDWLEPV---ERAVCREIEEELGIALE------RATLLCVVDHIDAANGEHWVAP 108 (157)
T ss_dssp TTEEEEEEECSSS-STTCEECCEEECCTTCCH---HHHHHHHHHHHHSCEEE------SCEEEEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEecCCC-CCCEEECCcccCCCCCCH---HHHHHHHHHHHHCcccc------cCcEEEEEEeeccCCCcEEEEE
Confidence 7899999999766 899999999999999877 89999999999999876 456788888998 57777788
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccC
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKS 472 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~ 472 (482)
+|.+.+ ..+.... ....|+.+++|++.+++.+ .+++.++++++.|.
T Consensus 109 ~f~~~~-~~~~~~~---~~~~E~~~~~W~~~~el~~-~l~~~~~~~l~~l~ 154 (157)
T 4dyw_A 109 VYLAHA-FSGEPRV---VEPDRHEALGWFALDDLPQ-PLTHATRIALEQVT 154 (157)
T ss_dssp EEEESE-EESCCCC---SCTTTEEEEEEEETTSCCS-SBCHHHHHHHHHHC
T ss_pred EEEEEE-cCCCccc---CCCCcEeEEEEECHHHccc-ccCHHHHHHHHHHH
Confidence 888753 2332111 1235677899999999999 89999999999875
No 37
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=99.55 E-value=9.4e-15 Score=129.17 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=82.8
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCc----eE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH----IR 417 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth----~~ 417 (482)
..+|+||+.||+. |.|+||||++++||++ ++|+.||+.||.|+++. ....++.+.|.|+. ..
T Consensus 12 ~~~~~vLL~~r~~-----g~W~~PgG~ve~gEt~---~~aa~RE~~EEtGl~~~------~~~~l~~~~~~~~~~~~~~~ 77 (134)
T 3i7u_A 12 FKDGEVLLIKTPS-----NVWSFPKGNIEPGEKP---EETAVREVWEETGVKGE------ILDYIGEIHYWYTLKGERIF 77 (134)
T ss_dssp EETTEEEEEECTT-----SCEECCEEECCTTCCH---HHHHHHHHHHHHSEEEE------EEEEEEEEEEEEEETTEEEE
T ss_pred EECCEEEEEEeCC-----CcEECCeeEecCCCCH---HHHHHHHHHHhcCceEE------EeeeeeeeeEEecCCCceEE
Confidence 3478999999963 6799999999999988 89999999999999876 45677777776642 22
Q ss_pred EEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhc
Q 011579 418 LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMG 470 (482)
Q Consensus 418 l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~ 470 (482)
..+++|.+.. .++... .+.|+.+++|++.+++.++...+.++.|++.
T Consensus 78 ~~~~~f~~~~--~~~~~~----~~~E~~~~~W~~~~e~~~~l~~~~~r~il~~ 124 (134)
T 3i7u_A 78 KTVKYYLMKY--KEGEPR----PSWEVKDAKFFPIKEAKKLLKYKGDKEIFEK 124 (134)
T ss_dssp EEEEEEEEEE--EEECCC----CCTTSSEEEEEEHHHHHHHBCSHHHHHHHHH
T ss_pred EEEEEEEEEE--cCCcCc----CChhheEEEEEEHHHHhhhcCChHHHHHHHH
Confidence 3455666642 332221 2357889999999999988777888888864
No 38
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=99.53 E-value=2.2e-14 Score=134.03 Aligned_cols=113 Identities=10% Similarity=0.090 Sum_probs=88.4
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCc-----eE
Q 011579 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH-----IR 417 (482)
Q Consensus 343 ~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth-----~~ 417 (482)
.+|+||+.||+. +|+|+||||+++.||++ ++|+.||+.||+|+++. ....++.+.|.+++ .+
T Consensus 13 ~~~~vLL~~r~~----~g~W~lPGG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~ 79 (188)
T 3fk9_A 13 DHDQVLLLQKPR----RGWWVAPGGKMEAGESI---LETVKREYWEETGITVK------NPELKGIFSMVIFDEGKIVSE 79 (188)
T ss_dssp ETTEEEEEECTT----TCCEECCEEECCTTCCH---HHHHHHHHHHHHSCEES------SCEEEEEEEEEEEETTEEEEE
T ss_pred ECCEEEEEEeCC----CCeEECCeecccCCCCH---HHHHHHHHHHHHCCCCC------CceEEEEEEEEecCCCcceEE
Confidence 478999999974 78999999999999887 89999999999999876 45677778888765 33
Q ss_pred EEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccCCC
Q 011579 418 LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKSPP 474 (482)
Q Consensus 418 l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~~ 474 (482)
+.+++|.+.. ..+... ...+..+++|++.+++..++++++++.+++.+...
T Consensus 80 ~~~~~f~a~~-~~~~~~-----~~~e~~~~~W~~~~el~~~~l~~~~~~~l~~~l~~ 130 (188)
T 3fk9_A 80 WMLFTFKATE-HEGEML-----KQSPEGKLEWKKKDEVLELPMAAGDKWIFKHVLHS 130 (188)
T ss_dssp EEEEEEEESC-EESCCC-----SEETTEEEEEEEGGGGGGSCCCHHHHHHHHHHTTC
T ss_pred EEEEEEEEEC-CCCCCc-----CCCCCEeEEEEEHHHhhhCCCCHHHHHHHHHHHcC
Confidence 4566676642 233211 12345689999999999999999999999988554
No 39
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=99.53 E-value=2e-14 Score=129.05 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=88.5
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCce-----
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHI----- 416 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~----- 416 (482)
+.+|+||+.||..++ ++|+|+||||.++.+|++ ++|+.||+.||+|+.+.. .....++.+.|.|+|.
T Consensus 27 ~~~~~vLl~~r~~~~-~~g~w~~PgG~ve~gE~~---~~aa~REl~EEtGl~~~~----~~~~~~~~~~~~~~~~~~~~~ 98 (160)
T 1rya_A 27 NSRGEFLLGKRTNRP-AQGYWFVPGGRVQKDETL---EAAFERLTMAELGLRLPI----TAGQFYGVWQHFYDDNFSGTD 98 (160)
T ss_dssp CTTSCEEEEEECSSS-STTSEECCEEECCTTCCH---HHHHHHHHHHHHSSCCCG----GGSEEEEEEEEEESSBTTBSS
T ss_pred cCCCEEEEEeccCCC-CCCEEECCccccCCCCCH---HHHHHHHHHHHHCCCCCc----ccceEEEEEeEEEcccccCCC
Confidence 457899999998755 799999999999999887 899999999999998530 1346788899999875
Q ss_pred ---EEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCC-hHhHHHHhcc
Q 011579 417 ---RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLT-SGVRKVMMGK 471 (482)
Q Consensus 417 ---~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp-~a~~kil~~L 471 (482)
++.+++|.+. ..++.. .....++.+++|++.+++.++++. +..+.+++.+
T Consensus 99 ~~~~~~~~~f~~~--~~~~~~---~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~~~ 152 (160)
T 1rya_A 99 FTTHYVVLGFRFR--VSEEEL---LLPDEQHDDYRWLTSDALLASDNVHANSRAYFLAE 152 (160)
T ss_dssp SCEEEEEEEEEEE--CCGGGC---CCCSSSEEEEEEECHHHHHHCTTBCHHHHGGGCHH
T ss_pred cCcEEEEEEEEEE--cCcccc---ccCCCccceEEEecHHHHhhccccCHHHHHHHHHH
Confidence 6677777774 332211 122357788999999999999854 5556655543
No 40
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=99.53 E-value=2.9e-15 Score=139.86 Aligned_cols=142 Identities=17% Similarity=0.090 Sum_probs=91.4
Q ss_pred CCCCCCcccChhhhccCCCCCcceecccccccccccceeeeeeEEEEEecCCCCCCcccCCC--eEEEEecCCC-CCCCc
Q 011579 284 CTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQRHDVSAACVVEILGGNDESERTQPDG--VFILVKRRDE-GLLAG 360 (482)
Q Consensus 284 C~~Cpl~~~C~~~~~~~~~~~~~~~~~P~k~~K~k~~~~~vav~Ii~~~~~~~~~~~~~~~g--kvLl~KRp~~-gllaG 360 (482)
|..+|+++.|.+...+. +..+|++.++.+.... .+++|+. +.+| +||+.||... +.++|
T Consensus 3 ~p~~P~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~v~i-----------~~~~~~~vLL~~r~~~~~~~~g 64 (194)
T 1nqz_A 3 APHDPLDDIQADPWALW------LSGRTRTALELPHYRR-AAVLVAL-----------TREADPRVLLTVRSSELPTHKG 64 (194)
T ss_dssp -CCCHHHHHHTCTTCCC------BCC----------CEE-EEEEEEE-----------ESSSSCBBCEEEEC------CC
T ss_pred CCCCcCCHHHHHHHHHH------HhhcChhhccCCCCce-EEEEEEE-----------ecCCCeEEEEEEecCCCCCCCC
Confidence 55788999999876663 5678877655433333 3333331 3455 8999999865 67899
Q ss_pred ccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEEEEEEEEEEeCCcccccccc
Q 011579 361 LWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQ 440 (482)
Q Consensus 361 LWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~~~~~~~~~~~~~~~~~~~~ 440 (482)
+|+||||.++.||+. ++|+.||+.||+|+++. ....++.+.|.+++....+++|.+.+ .+... .....
T Consensus 65 ~w~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~l~~~~~~~~~~~~~~~~f~~~~--~~~~~-~~~~~ 132 (194)
T 1nqz_A 65 QIAFPGGSLDAGETP---TQAALREAQEEVALDPA------AVTLLGELDDVFTPVGFHVTPVLGRI--APEAL-DTLRV 132 (194)
T ss_dssp CEECSEEECCTTCCH---HHHHHHHHHHHHCCCGG------GCEEEEECCCEEETTTEEEEEEEEEE--CGGGG-GGCCC
T ss_pred eEECCcccCCCCCCH---HHHHHHHHHHHHCCCcc------ceEEEEEccCccCCCCeEEEEEEEEe--cCCcc-ccCCC
Confidence 999999999999877 89999999999999886 44667777777776666778887753 32111 01223
Q ss_pred cCCCCeeeeeccCCc
Q 011579 441 DKGTLSWKCVDGGTL 455 (482)
Q Consensus 441 ~~e~~~~~Wv~~~eL 455 (482)
..|..++.|++.+++
T Consensus 133 ~~E~~~~~W~~~~el 147 (194)
T 1nqz_A 133 TPEVAQIITPTLAEL 147 (194)
T ss_dssp CTTEEEEECCBHHHH
T ss_pred ccceeEEEEEEHHHh
Confidence 457778999999988
No 41
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=99.51 E-value=1.1e-14 Score=128.78 Aligned_cols=108 Identities=12% Similarity=0.062 Sum_probs=82.0
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEE------EEcCceE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFV------HIFSHIR 417 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~------H~fth~~ 417 (482)
+|+||+.||+. |+|+||||.++.||++ ++|+.||+.||+|+++. ....++.+. |.++|.+
T Consensus 30 ~~~vLl~~r~~-----g~w~~PgG~ve~gE~~---~~aa~RE~~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~ 95 (148)
T 2azw_A 30 NNTMVLVQAPN-----GAYFLPGGEIEGTETK---EEAIHREVLEELGISVE------IGCYLGEADEYFYSNHRQTAYY 95 (148)
T ss_dssp GTEEEEEECTT-----SCEECSEEECCTTCCH---HHHHHHHHHHHHSEEEE------EEEEEEEEEEEEEETTTTEEEE
T ss_pred CCeEEEEEcCC-----CCEeCCCcccCCCCCH---HHHHHHHHHHHhCCeeE------eeeEEEEEEEEEcCCCCCcceE
Confidence 68999999953 7999999999999887 89999999999999875 344555543 2223466
Q ss_pred EEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 418 LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 418 l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
..+++|.+... .+ .. ....++.+++|++.+++.++.+++.++++++.+
T Consensus 96 ~~~~~~~~~~~-~~-~~----~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~ 143 (148)
T 2azw_A 96 NPGYFYVANTW-RQ-LS----EPLERTNTLHWVAPEEAVRLLKRGSHRWAVEKW 143 (148)
T ss_dssp EEEEEEEEEEE-EE-CS----SCC-CCSEEEEECHHHHHHHBSCHHHHHHHHHH
T ss_pred EEEEEEEEEcC-cC-Cc----CCCCceeeEEEeeHHHHHhhhcchhHHHHHHHH
Confidence 67788877532 22 11 122466789999999999999999999999765
No 42
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=99.50 E-value=3.5e-14 Score=127.29 Aligned_cols=107 Identities=20% Similarity=0.207 Sum_probs=83.6
Q ss_pred cCCCeEEEEecCC---CCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCc-eE
Q 011579 342 QPDGVFILVKRRD---EGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH-IR 417 (482)
Q Consensus 342 ~~~gkvLl~KRp~---~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth-~~ 417 (482)
+.+|++|+.||.. ++.++|+|+||||.++.||++ ++|+.||+.||+|+.+. ....++.+.|.|+| .+
T Consensus 22 ~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~---~~aa~RE~~EEtGl~~~------~~~~l~~~~~~~~~~~~ 92 (159)
T 1sjy_A 22 NERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENP---QDAAVREACEETGLRVR------PVKFLGAYLGRFPDGVL 92 (159)
T ss_dssp CTTCCEEEEEESCC----CCCCCEECSEEECCTTSCH---HHHHHHHHHHHHSCCEE------EEEEEEEEEEECTTSCE
T ss_pred eCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCH---HHHHHHHHHHHHCccce------eeEEEEEEecccCCCce
Confidence 4578999999986 678899999999999999877 89999999999999976 45678889999998 78
Q ss_pred EEEEEEEEEEEEeCCccccccc-ccCCCCeeeeeccCCcccCCCC
Q 011579 418 LKVHVELLVLCIKGGIDKWVEK-QDKGTLSWKCVDGGTLASMGLT 461 (482)
Q Consensus 418 l~L~~~~~~~~~~~~~~~~~~~-~~~e~~~~~Wv~~~eL~~~~fp 461 (482)
..+++|.+.+ .++... .+ ...|..++.|++.+++.++..+
T Consensus 93 ~~~~~f~~~~--~~~~~~--~~~~~~E~~~~~W~~~~el~~~~~~ 133 (159)
T 1sjy_A 93 ILRHVWLAEP--EPGQTL--APAFTDEIAEASFVSREDFAQLYAA 133 (159)
T ss_dssp EEEEEEEEEE--CSSCCC--CCCCCSSEEEEEEECHHHHHHHHHT
T ss_pred EEEEEEEEEc--cCCCcc--ccCCCCceeEEEEecHHHHHHhhhc
Confidence 8888888753 332200 12 3356778999999998876543
No 43
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=99.49 E-value=2.3e-14 Score=126.69 Aligned_cols=114 Identities=14% Similarity=0.133 Sum_probs=84.9
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCccccccccc-----------ccEEEE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDV-----------GEFVHI 412 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l-----------~~v~H~ 412 (482)
+|++|+.||+.+ +|+|+||||+++.||++ .+|+.||+.||+|+++.... ...+ ....|.
T Consensus 21 ~~~vLl~~r~~~---~g~w~~PgG~ve~gE~~---~~aa~RE~~EEtGl~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 90 (150)
T 2o1c_A 21 TKRVLMLQRRDD---PDFWQSVTGSVEEGETA---PQAAMREVKEEVTIDVVAEQ----LTLIDCQRTVEFEIFSHLRHR 90 (150)
T ss_dssp TCEEEEEECSSS---TTCEESEEEECCTTCCH---HHHHHHHHHHHHCCCHHHHT----CCEEEEEEEEEEECCGGGGGG
T ss_pred CCEEEEEEecCC---CCceECCccccCCCCCH---HHHHHHHHHHHhCCCccccc----eeEEeeeceeeeeeecccccc
Confidence 589999999875 78999999999999887 89999999999999874100 0111 122234
Q ss_pred cC--ceEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccCC
Q 011579 413 FS--HIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKSP 473 (482)
Q Consensus 413 ft--h~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~ 473 (482)
|+ |.+..+++|.+. ..++.. ....|+.+++|++.+++.++.++++++++++.+..
T Consensus 91 ~~~~~~~~~~~~f~~~--~~~~~~----~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 147 (150)
T 2o1c_A 91 YAPGVTRNTESWFCLA--LPHERQ----IVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVI 147 (150)
T ss_dssp BCTTCCEEEEEEEEEE--ESSCCC----CCCSSSSCEEEEEHHHHHHHCSCHHHHHHHHHHTT
T ss_pred cCCCCcceEEEEEEEE--cCCCCC----cChhHhhccEeecHHHHHhhhcCHHHHHHHHHHHH
Confidence 54 556777888875 333221 12257889999999999999999999999987653
No 44
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=99.47 E-value=8e-14 Score=124.11 Aligned_cols=116 Identities=14% Similarity=-0.000 Sum_probs=89.5
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcC--ceEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS--HIRLK 419 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~ft--h~~l~ 419 (482)
..+|++|+.||...+. +|+|+||||+++.+|++ ++|+.||+.||+|+++. ....++.+.|.++ +.+..
T Consensus 16 ~~~~~vLl~~r~~~~~-~~~w~lPgG~ve~gE~~---~~aa~RE~~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~ 85 (153)
T 2b0v_A 16 EQDDKYLLVEEIPRGT-AIKLNQPAGHLEPGESI---IQACSREVLEETGHSFL------PEVLTGIYHWTCASNGTTYL 85 (153)
T ss_dssp EETTEEEEEEECSSSS-CCEEECSEEECCTTSCH---HHHHHHHHHHHHSEEEE------EEEEEEEEEEEETTTTEEEE
T ss_pred eeCCEEEEEEEcCCCC-CCeEECCCcCcCCCCCH---HHHHHHHHHHhhCcEec------cceEEEEEEEeCCCCCcEEE
Confidence 3478999999998887 99999999999999887 89999999999999875 4567777778887 45555
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccC---CCChHhHHHHhcc
Q 011579 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM---GLTSGVRKVMMGK 471 (482)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~---~fp~a~~kil~~L 471 (482)
+++|.+.+. .+... .....+..+++|++.+++.++ .+++..++++..+
T Consensus 86 ~~~f~~~~~-~~~~~---~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~l~~~ 136 (153)
T 2b0v_A 86 RFTFSGQVV-SFDPD---RKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIEDY 136 (153)
T ss_dssp EEEEEEEEE-EECTT---SCCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHHHH
T ss_pred EEEEEEEeC-CCCCC---CCCCCCeeeEEEecHHHHhhhhcccCcHHHHHHHHHH
Confidence 667777532 22110 122356778999999999984 5778888888776
No 45
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=99.47 E-value=5.2e-14 Score=123.17 Aligned_cols=114 Identities=14% Similarity=0.080 Sum_probs=88.5
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccc-cccccEEEEcCceEEEEEE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILR-EDVGEFVHIFSHIRLKVHV 422 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~-~~l~~v~H~fth~~l~L~~ 422 (482)
+++||+.||+.+ +|+|+||||+++.+|++ ++|+.||+.||+|+.+.. .... ..++.+.|.+++.+..+++
T Consensus 17 ~~~vLl~~r~~~---~~~w~~PgG~ve~gE~~---~~aa~RE~~EEtGl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 87 (138)
T 1ktg_A 17 KIEFLLLQASYP---PHHWTPPKGHVDPGEDE---WQAAIRETKEEANITKEQ---LTIHEDCHETLFYEAKGKPKSVKY 87 (138)
T ss_dssp EEEEEEEEESST---TCCEESSEEECCTTCCH---HHHHHHHHHHHHCCCGGG---EEEEEEEEEEEEEEETTEEEEEEE
T ss_pred CcEEEEEEccCC---CCcEeCCccccCCCCCH---HHHHHHHHHHHHCCCccc---eEEeccccceEEEEeCCCceEEEE
Confidence 478999999743 58999999999999887 899999999999996541 0011 3455677888888888888
Q ss_pred EEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 423 ELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
|.+.+ .++.. ...+.|+.+++|++.+++.++.+++.++++++.+
T Consensus 88 f~~~~--~~~~~---~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~ 131 (138)
T 1ktg_A 88 WLAKL--NNPDD---VQLSHEHQNWKWCELEDAIKIADYAEMGSLLRKF 131 (138)
T ss_dssp EEEEE--CSCCC---CCCCTTEEEEEEECHHHHHHHHCCHHHHHHHHHH
T ss_pred EEEEe--cCCcc---cCCCchhcEeEeccHHHHHHhhccchHHHHHHHH
Confidence 88853 33211 1234577789999999999999999999998765
No 46
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=99.46 E-value=1.9e-13 Score=122.52 Aligned_cols=114 Identities=15% Similarity=0.034 Sum_probs=83.7
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
+.+|+||+.||.... ++|.|+||||+++.||++ ++|+.||+.||+|+++. ....++.+.+.+.+ ..+
T Consensus 29 ~~~~~vLl~~r~~~~-~~~~w~~PgG~ve~gE~~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~---~~~ 95 (156)
T 3gg6_A 29 SEQDEVLLIQEAKRE-CRGSWYLPAGRMEPGETI---VEALQREVKEEAGLHCE------PETLLSVEERGPSW---VRF 95 (156)
T ss_dssp CTTSEEEEEECCCTT-STTCEECSEEECCTTCCH---HHHHHHHHHHHHCEEEE------EEEEEEEEESSTTE---EEE
T ss_pred eCCCEEEEEEecCCC-CCCEEECCeeeccCCCCH---HHHHHHHHHHhhCceeE------eeeEEEEEcCCCCE---EEE
Confidence 567999999998654 899999999999999887 89999999999999875 34555554443332 335
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhc
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMG 470 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~ 470 (482)
+|.+.+ ..+. .........|+.+++|++.+++.++-.+...+.++..
T Consensus 96 ~f~~~~-~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~ 142 (156)
T 3gg6_A 96 VFLARP-TGGI-LKTSKEADAESLQAAWYPRTSLPTPLRAHDILHLVEL 142 (156)
T ss_dssp EEEEEE-EEEC-CCCGGGCSSSCSEEEEEETTSCCSSBSCTHHHHHHHH
T ss_pred EEEEEe-eCCe-eccCCCCCcceeeeEEEcHHHCcccccchhHHHHHHH
Confidence 666653 2222 1111123367889999999999998888888777764
No 47
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=99.44 E-value=3.2e-13 Score=121.15 Aligned_cols=104 Identities=14% Similarity=0.119 Sum_probs=72.9
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccE-----EEEcCce
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEF-----VHIFSHI 416 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v-----~H~fth~ 416 (482)
+.+|+||+.+|. +|+|+||||+++.+|++ ++|+.||+.||+|+++. ....++.+ .|.|++.
T Consensus 30 ~~~~~vLL~~r~-----~~~w~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~ 95 (153)
T 3eds_A 30 NEQGEILFQYPG-----GEYWSLPAGAIELGETP---EEAVVREVWEETGLKVQ------VKKQKGVFGGKEYRYTYSNG 95 (153)
T ss_dssp CTTCCEEEECC--------CBBCSEEECCTTSCH---HHHHHHHHHHHHCEEEE------EEEEEEEECSGGGEEECTTS
T ss_pred cCCCeEEEEEcC-----CCcEECCccccCCCCCH---HHHHHHHHHHHHCccce------eeeEEEEecccceeeecCCC
Confidence 557899999997 89999999999999887 89999999999999875 33455544 7888874
Q ss_pred E---EEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHh
Q 011579 417 R---LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGV 464 (482)
Q Consensus 417 ~---l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~ 464 (482)
. ..+++|.+.+ ..+ .. .....|..+++|++.+++.++.+|-+.
T Consensus 96 ~~~~~~~~~f~~~~-~~~-~~---~~~~~E~~~~~W~~~~el~~l~~~~p~ 141 (153)
T 3eds_A 96 DEVEYIVVVFECEV-TSG-EL---RSIDGESLKLQYFSLSEKPPLALPYPD 141 (153)
T ss_dssp CEEEEEEEEEEEEE-EEE-CC---C-------CEEEECGGGCCCBSSCCCG
T ss_pred CeEEEEEEEEEEEe-cCC-cc---ccCCCcEEEEEEECHHHCchhcccCcc
Confidence 3 3566777753 222 11 122356778999999999999887654
No 48
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=99.43 E-value=4.3e-14 Score=128.87 Aligned_cols=116 Identities=9% Similarity=-0.022 Sum_probs=88.3
Q ss_pred cCCCeEEEEecC-CCCCCCcccc-cCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEE-EEcCceEE
Q 011579 342 QPDGVFILVKRR-DEGLLAGLWE-FPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFV-HIFSHIRL 418 (482)
Q Consensus 342 ~~~gkvLl~KRp-~~gllaGLWE-FPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~-H~fth~~l 418 (482)
+.+|++|+.||. .++.++|+|+ ||||.++.||++ .+|+.||+.||+|+.+... ....++.+. |.+++..
T Consensus 43 ~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~---~~aa~REl~EEtGl~~~~~----~l~~~~~~~~~~~~~~~- 114 (171)
T 1q27_A 43 NSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETY---EEAFRREAREELNVEIDAL----SWRPLASFSPFQTTLSS- 114 (171)
T ss_dssp ETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCH---HHHHHHHHHHHHSCTTSSS----CEEEEEEECSSSSCCSS-
T ss_pred CCCCeEEEEEecCCCCCCCCccccccCccccCCCCH---HHHHHHHHHHHHCCccccc----ceEEEEEEeccCCCCcc-
Confidence 567899999995 5667899999 999999999887 8999999999999998621 024556666 7777665
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcc--cCCCChHhHHHHhcc
Q 011579 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLA--SMGLTSGVRKVMMGK 471 (482)
Q Consensus 419 ~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~--~~~fp~a~~kil~~L 471 (482)
.+++|.+. ..+. . .....++.+++|++.+++. .++++.++.+++..|
T Consensus 115 ~~~~f~~~--~~~~-~---~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~l 163 (171)
T 1q27_A 115 FMCVYELR--SDAT-P---IFNPNDISGGEWLTPEHLLARIAAGEAAKGDLAELV 163 (171)
T ss_dssp EEEEEEEE--CCCC-C---CSCTTTCSCCEEECHHHHHHHHHHHSSCCHHHHHHH
T ss_pred EEEEEEEE--ECCc-c---ccCchhhheEEEecHHHHHHHHhcCCCCchhHHHHH
Confidence 56777764 3332 1 1234677889999999999 677888888888766
No 49
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=99.41 E-value=8.8e-13 Score=118.79 Aligned_cols=110 Identities=10% Similarity=-0.098 Sum_probs=75.9
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccc----------------
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVG---------------- 407 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~---------------- 407 (482)
+|+|||.||.. +|.|+||||+++.||++ ++|+.||+.||+|+++. ....++
T Consensus 16 ~~~vLL~~r~~----~g~w~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~ 82 (159)
T 3f6a_A 16 KDKVLLHLHKK----AKKMLPLGGHIEVNELP---EEACIREAKEEAGLNVT------LYNPIDINLKKSCDLSGEKLLI 82 (159)
T ss_dssp TTEEEEEECSS----SCCEECEEEECCTTCCH---HHHHHHHHHHHHCCCCE------ECCCCCHHHHHHHHHTTCEEEC
T ss_pred CCEEEEEEcCC----CCeEECCccCccCCCCH---HHHHHHHHHHHhCCCce------eccccccccccccccccccccc
Confidence 78999999975 68999999999999887 89999999999999875 222221
Q ss_pred ----cEEEEcCceEEEE-EEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHH-HHhcc
Q 011579 408 ----EFVHIFSHIRLKV-HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRK-VMMGK 471 (482)
Q Consensus 408 ----~v~H~fth~~l~L-~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~k-il~~L 471 (482)
...|.|+..+..+ .+|.+. ..++.. .....|+.+++|++.+++.++++.+++.. +...+
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~f~~~--~~~~~~---~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 147 (159)
T 3f6a_A 83 NPIHTILGDVSPNHSHIDFVYYAT--TTSFET---SPEIGESKILKWYSKEDLKNAHNIQENILVMATEA 147 (159)
T ss_dssp CCSEEEEECSSSSSCEEEEEEEEE--CSCSCC---CCCTTSCCCEEEECSSSSTTCSSSCHHHHHHHHHH
T ss_pred CccccccccCCCCceEEEEEEEEE--eCCCCc---CCCCCcccceEEeeHHHHhhCcCCChhHHHHHHHH
Confidence 2234444333333 355553 333222 12346788999999999999995555544 44433
No 50
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=99.39 E-value=6.7e-13 Score=119.45 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=75.0
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccE--------------
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEF-------------- 409 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v-------------- 409 (482)
+|++|+.||+. .|+|+||||+++.||++ ++|+.||+.||+|+++. ....++.+
T Consensus 11 ~~~vLL~~r~~----~g~W~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~~ 77 (156)
T 1k2e_A 11 NGKVLLVKHKR----LGVYIYPGGHVEHNETP---IEAVKREFEEETGIVVE------PIGFTYGIIDENAVERPMPLVI 77 (156)
T ss_dssp TTEEEEEECTT----TCSEECSEEECCTTCCH---HHHHHHHHHHHHSEEEE------ECCCCCCCBSSSEEECCCCSEE
T ss_pred CCEEEEEEEcC----CCcEECCeeecCCCCCH---HHHHHHHHHHHHCCcce------eccceeeeccccccccccccee
Confidence 78999999975 68999999999999887 89999999999999875 22222111
Q ss_pred ---EEEcCc-eEEEEE-EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 410 ---VHIFSH-IRLKVH-VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 410 ---~H~fth-~~l~L~-~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
.+.|+. ...++. +|.+. ..+ .+..+++|++++++.++++++.++++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~f~~~--~~~----------~e~~~~~W~~~~el~~~~~~~~~~~~l~~~ 132 (156)
T 1k2e_A 78 LEEVVKYPEETHIHFDLIYLVK--RVG----------GDLKNGEWIDVREIDRIETFPNVRKVVSLA 132 (156)
T ss_dssp EEEEEECSSCEEEEEEEEEEEE--EEE----------ECCCSCEEEEGGGGGGSCBSTTHHHHHHHH
T ss_pred eeeeecCCCCceEEEEEEEEEE--ecC----------CcEeeeEEeCHHHHhcCCCChHHHHHHHHH
Confidence 112332 223332 24443 222 346789999999999999999999998765
No 51
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=99.38 E-value=1.4e-12 Score=121.46 Aligned_cols=110 Identities=14% Similarity=0.069 Sum_probs=83.5
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEEEE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVE 423 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~~~ 423 (482)
+|+|||.||.... .+|+|+||||.++.+|++ ++|+.||+.||+|+++. ....++ .|.|++.+..+++|
T Consensus 50 ~~~vLL~~r~~~~-~~g~w~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~--~~~~~~~~~~~~~f 117 (189)
T 3cng_A 50 ENKVLLCKRAIAP-YRGKWTLPAGFMENNETL---VQGAARETLEEANARVE------IRELYA--VYSLPHISQVYMLF 117 (189)
T ss_dssp TTEEEEEEESSSS-STTCEECSEEECCTTCCH---HHHHHHHHHHHHCCCEE------EEEEEE--EEEEGGGTEEEEEE
T ss_pred CCEEEEEEccCCC-CCCeEECceeeccCCCCH---HHHHHHHHHHHHCCccc------cceeEE--EEecCCCcEEEEEE
Confidence 7899999998765 489999999999999887 89999999999999875 223332 37788887778888
Q ss_pred EEEEEEeCCcccccccccCCCCeeeeeccCCcc--cCCCChHhHHHHhcc
Q 011579 424 LLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLA--SMGLTSGVRKVMMGK 471 (482)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~--~~~fp~a~~kil~~L 471 (482)
.+.. .++... ...|..+++|++.+++. .+.+|.....|...+
T Consensus 118 ~~~~--~~~~~~----~~~E~~~~~W~~~~el~~~~l~~~~~~~~l~~~l 161 (189)
T 3cng_A 118 RAKL--LDLDFF----PGIESLEVRLFGEQEIPWNDIAFRVIHDPLKRYM 161 (189)
T ss_dssp EEEE--CCSCCC----CCTTEEEEEEECTTTCCGGGBSCHHHHHHHHHHH
T ss_pred EEEe--CCCccC----CCccceeEEEECHHHcCcccccChHHHHHHHHHH
Confidence 8753 332211 13567789999999998 788887666554443
No 52
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=99.38 E-value=4.1e-13 Score=120.07 Aligned_cols=107 Identities=10% Similarity=0.007 Sum_probs=78.5
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceE----E
Q 011579 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIR----L 418 (482)
Q Consensus 343 ~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~----l 418 (482)
.+|++|+.|| +|.|+||||.++.||++ ++|+.||+.||+|+++. ....++.+.|.|++.. .
T Consensus 28 ~~~~vLl~~r------~~~w~lPgG~ve~gE~~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~ 92 (154)
T 2pqv_A 28 QNHKLLVTKD------KGKYYTIGGAIQVNEST---EDAVVREVKEELGVKAQ------AGQLAFVVENRFEVDGVSYHN 92 (154)
T ss_dssp ETTEEEEEEE------TTEEECEEEECBTTCCH---HHHHHHHHHHHHCCCEE------EEEEEEEEEEEEEETTEEEEE
T ss_pred ECCEEEEEec------CCeEECcccCcCCCCCH---HHHHHHHHHHHhCCeee------eceEEEEEeeeecCCCCcceE
Confidence 3689999999 68999999999999887 89999999999999875 4556677777776432 2
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHH
Q 011579 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKV 467 (482)
Q Consensus 419 ~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~ki 467 (482)
..++|.+. ..++.... ...+.+..+++|++++++..++|++++.+-
T Consensus 93 ~~~~f~~~--~~~~~~~~-~~~~~e~~~~~W~~~~el~~~~~~~~~~~~ 138 (154)
T 2pqv_A 93 IEFHYLVD--LLEDAPLT-MQEDEKRQPCEWIDLDKLQNIQLVPVFLKT 138 (154)
T ss_dssp EEEEEEEE--ESSCCCSE-EEETTEEEEEEEEEGGGGGGSCEESTTHHH
T ss_pred EEEEEEEE--ecCCCCcc-cCCCCceeeEEEeEHHHHhhcCcCcHHHHH
Confidence 23456554 33322110 012344678999999999999998887663
No 53
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=99.38 E-value=1e-13 Score=132.16 Aligned_cols=116 Identities=11% Similarity=0.026 Sum_probs=75.9
Q ss_pred cCCCeEEEEecCCCC---CCCccccc-CccccCCCCC--h-hhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEc-
Q 011579 342 QPDGVFILVKRRDEG---LLAGLWEF-PSIILDGETD--I-TTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF- 413 (482)
Q Consensus 342 ~~~gkvLl~KRp~~g---llaGLWEF-Pggkve~~e~--~-~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~f- 413 (482)
..+|+||+.||+.++ .+.|.|+| |||++|.||+ + ++.++|+.||+.||+|+++. ....++.+.+.+
T Consensus 76 ~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~------~~~~ig~~~~~~~ 149 (211)
T 3e57_A 76 MDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLR------ELEFLGLINSSTT 149 (211)
T ss_dssp EETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEE------EEEEEEEEECCSS
T ss_pred EECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeee------ccEEEEEEeccCC
Confidence 357999999998765 37788999 9999999987 3 56789999999999999875 456677666532
Q ss_pred CceEEEE-EEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccC--CCChHhHHHHhc
Q 011579 414 SHIRLKV-HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM--GLTSGVRKVMMG 470 (482)
Q Consensus 414 th~~l~L-~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~--~fp~a~~kil~~ 470 (482)
+...+++ .+|.|.. ..+ ++...++.+++|+++++|.++ .|.+-..-+++.
T Consensus 150 ~~~~~~l~~~f~~~~-~~g------~~~~~E~~~~~W~~~~eL~~~~~~le~wS~lvl~~ 202 (211)
T 3e57_A 150 EVSRVHLGALFLGRG-KFF------SVKEKDLFEWELIKLEELEKFSGVMEGWSKISAAV 202 (211)
T ss_dssp HHHHTEEEEEEEEEE-EEE------EESCTTTCEEEEEEHHHHHHHGGGCCHHHHHHHHH
T ss_pred CCCeEEEEEEEEEEe-CCc------eeCCCCeEEEEEEEHHHHHHhHhhccchhHHHHHH
Confidence 2222222 3577753 233 234467889999999999987 565444444443
No 54
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=99.37 E-value=4.1e-12 Score=111.54 Aligned_cols=104 Identities=13% Similarity=0.181 Sum_probs=76.2
Q ss_pred CCCe--EEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCc-----
Q 011579 343 PDGV--FILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH----- 415 (482)
Q Consensus 343 ~~gk--vLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth----- 415 (482)
.+|+ +|+.||...+ +.|+||||+++.||++ ++|+.||+.||+|+.+. .. .+.+.|+|
T Consensus 21 ~~~~~~vLl~~r~~~~---~~w~~PgG~ve~gE~~---~~aa~RE~~EEtGl~~~------~~----~~~~~~~~~~~~~ 84 (139)
T 2yyh_A 21 GENFKGIVLIERKYPP---VGLALPGGFVEVGERV---EEAAAREMREETGLEVR------LH----KLMGVYSDPERDP 84 (139)
T ss_dssp TTEEEEEEEEEECSSS---CSEECCEEECCTTCCH---HHHHHHHHHHHHCCCCE------EE----EEEEEECCTTSCT
T ss_pred CCCcEEEEEEEecCCC---CcEECccccCCCCCCH---HHHHHHHHHHHHCCCcc------cc----eEEEEECCCCcCC
Confidence 5678 9999997653 2399999999999887 89999999999999875 22 23444544
Q ss_pred -eEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcc--cCCCChHhHHHHhcc
Q 011579 416 -IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLA--SMGLTSGVRKVMMGK 471 (482)
Q Consensus 416 -~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~--~~~fp~a~~kil~~L 471 (482)
.+..+++|.+.. .+... ...++.+++|++.+++. .+.++ +++++..+
T Consensus 85 ~~~~~~~~f~~~~--~~~~~-----~~~e~~~~~W~~~~el~~~~l~~~--~~~~l~~~ 134 (139)
T 2yyh_A 85 RAHVVSVVWIGDA--QGEPK-----AGSDAKKVKVYRLEEIPLDKLVFD--HKKIILDF 134 (139)
T ss_dssp TSCEEEEEEEEEE--ESCCC-----CCTTEEEEEEECTTSCCGGGBCTT--HHHHHHHH
T ss_pred CceEEEEEEEEec--CCccC-----CCCCcceEEEEEHHHCCHhhcCCC--HHHHHHHH
Confidence 456667787753 44211 23466789999999999 77776 67777654
No 55
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=99.37 E-value=1.1e-12 Score=124.12 Aligned_cols=108 Identities=17% Similarity=0.170 Sum_probs=81.2
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEE---EEcC--ceEE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFV---HIFS--HIRL 418 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~---H~ft--h~~l 418 (482)
+|+||+.||. .|.|+||||+++.||++ .+|+.||+.||.|+++. ....++.+. |.++ +.++
T Consensus 80 ~~~vLLvrr~-----~g~w~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~l~~~~~~~~~~~~~~~~~ 145 (206)
T 3o8s_A 80 EDKILLVQEN-----DGLWSLPGGWCDVDQSV---KDNVVKEVKEEAGLDVE------AQRVVAILDKHKNNPAKSAHRV 145 (206)
T ss_dssp TTEEEEEECT-----TSCEECSEEECCTTSCH---HHHHHHHHHHHHCEEEE------EEEEEEEEEHHHHCC-----CE
T ss_pred CCEEEEEEec-----CCeEECCeeccCCCCCH---HHHHHHHHHHHHCCcce------eeeEEEEEeccccCCCCCCceE
Confidence 5899999997 78999999999999887 89999999999999875 344555444 3443 3445
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 419 ~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
...+|.+.+ ..+ ... .+.|..+++|++.+++..+.+++..++++..+
T Consensus 146 ~~~~~~~~~-~~~-~~~----~~~E~~~~~w~~~~el~~l~~~~~~~~~l~~~ 192 (206)
T 3o8s_A 146 TKVFILCRL-LGG-EFQ----PNSETVASGFFSLDDLPPLYLGKNTAEQLALC 192 (206)
T ss_dssp EEEEEEEEE-EEE-CCC----CCSSCSEEEEECTTSCCCBCTTTCCHHHHHHH
T ss_pred EEEEEEEEe-cCC-eec----CCCCceEEEEEeHHHhhhccCCCchHHHHHHH
Confidence 556677753 222 111 12678899999999999999999998888765
No 56
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=99.37 E-value=4.1e-12 Score=116.07 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=76.5
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
..+|++|+.+|. +|.|+||||+++.||++ ++|+.||+.||+|+++. ....++ .|.+++ ...+
T Consensus 24 ~~~~~vLL~~r~-----~g~w~lPgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~l~--~~~~~~--~~~~ 85 (163)
T 3f13_A 24 EMPDGVLVTASR-----GGRYNLPGGKANRGELR---SQALIREIREETGLRIN------SMLYLF--DHITPF--NAHK 85 (163)
T ss_dssp EETTEEEEEECC--------BBCSEEECCTTCCH---HHHHHHHHHHHHCCCCC------EEEEEE--EEECSS--EEEE
T ss_pred EeCCEEEEEEEC-----CCeEECCceeCCCCCCH---HHHHHHHHHHHHCcccc------eeEEEE--EEecCC--eEEE
Confidence 457899999986 58999999999999887 89999999999999986 334443 345555 4556
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
+|.+. +.+... + ..|..+++|++ .+...++++++++.+++.+
T Consensus 86 ~f~~~--~~~~~~----~-~~E~~~~~W~~-~~~~~~~l~~~~~~il~~~ 127 (163)
T 3f13_A 86 VYLCI--AQGQPK----P-QNEIERIALVS-SPDTDMDLFVEGRAILRRY 127 (163)
T ss_dssp EEEEE--C-CCCC----C-CTTCCEEEEES-STTCSSCBCHHHHHHHHHH
T ss_pred EEEEE--ECCcCc----c-CCCceEEEEEC-cccccCCCCHHHHHHHHHH
Confidence 77774 444221 1 13778899999 6677889999999999876
No 57
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=99.35 E-value=1.6e-12 Score=115.54 Aligned_cols=118 Identities=13% Similarity=0.080 Sum_probs=82.8
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccc-cccccccEEEEcCc-eEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSII-LREDVGEFVHIFSH-IRLK 419 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~-~~~~l~~v~H~fth-~~l~ 419 (482)
+.+++||+.||..+ |.|+||||.++.||++ ++|+.||+.||+|+++....... ....+..+.|.|++ .+..
T Consensus 17 ~~~~~vLl~~r~~~----g~w~~PgG~ve~gE~~---~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (149)
T 3son_A 17 EANYQFGVLHRTDA----DVWQFVAGGGEDEEAI---SETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSFNKPYVVP 89 (149)
T ss_dssp SSSEEEEEEEESSS----SCEECEEEECCTTCCH---HHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGTCSSSCSEEE
T ss_pred CCCeEEEEEEEcCC----CCEeCCccccCCCCCH---HHHHHHHHHHHhCCCcccceEEEEeeecccceeeccCCceEeE
Confidence 45689999999864 9999999999999888 89999999999999986210000 00001111222333 4566
Q ss_pred EEEEEEEEEEe--CCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccC
Q 011579 420 VHVELLVLCIK--GGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKS 472 (482)
Q Consensus 420 L~~~~~~~~~~--~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~ 472 (482)
+++|.+. .. .+... . +.|+.+++|++++++.++.+++.++.++..+.
T Consensus 90 ~~~f~~~--~~~~~~~~~---~-~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 138 (149)
T 3son_A 90 EYCFAID--LTSCSYQVT---L-SLEHSELRWVSYESAIQLLEWDSNKTALYELN 138 (149)
T ss_dssp EEEEEEE--CTTTGGGCC---C-CTTEEEEEEECHHHHHHHCCCHHHHHHHHHHH
T ss_pred EEEEEEE--cCCCCCccc---C-CCceeeEEEeCHHHHHHHhcCHHHHHHHHHHH
Confidence 6777774 33 11111 1 36788899999999999999999999998763
No 58
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=99.34 E-value=1.9e-12 Score=115.38 Aligned_cols=115 Identities=13% Similarity=0.101 Sum_probs=80.9
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEE-E
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLK-V 420 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~-L 420 (482)
..+|++|+.||.. ..+|.|+||||+++.||++ ++|+.||+.||+|+++. ....++.+.|.+++.... .
T Consensus 13 ~~~~~vLl~~r~~--~~~~~w~~PgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~ 81 (153)
T 3shd_A 13 HAEGKFLVVEETI--NGKALWNQPAGHLEADETL---VEAAARELWEETGISAQ------PQHFIRMHQWIAPDKTPFLR 81 (153)
T ss_dssp EETTEEEEEEEEE--TTEEEEECSEEECCTTCCH---HHHHHHHHHHHHCCCCC------CCEEEEEEEECCTTSCCEEE
T ss_pred EeCCEEEEEEecC--CCCCCEECCeEEeCCCCCH---HHHHHHHHHHHHCcccc------cCcEEEEEEEecCCCceEEE
Confidence 4578999999973 3589999999999999887 89999999999999986 456677777777655433 3
Q ss_pred EEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCC--CChHhHHHHhcc
Q 011579 421 HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMG--LTSGVRKVMMGK 471 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~--fp~a~~kil~~L 471 (482)
++|.+. ..+... ..+...|+.+++|++.+++...+ ..+..+.++..+
T Consensus 82 ~~f~~~--~~~~~~--~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~ 130 (153)
T 3shd_A 82 FLFAIE--LEQICP--TQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCY 130 (153)
T ss_dssp EEEEEE--CSSCCC--CCCCSTTCCEEEEECHHHHHTCSCBSSTHHHHHHHHH
T ss_pred EEEEEE--ccccCc--CCCCcccceeeEEecHHHhhccccccCchHHHHHHHH
Confidence 566664 333211 12344678899999999992221 334445555444
No 59
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=99.29 E-value=3.7e-12 Score=118.38 Aligned_cols=115 Identities=8% Similarity=0.020 Sum_probs=86.0
Q ss_pred cCCCeEEEEecCC-CCCCCccccc-CccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccc-cccccEEEE--cCc-
Q 011579 342 QPDGVFILVKRRD-EGLLAGLWEF-PSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILR-EDVGEFVHI--FSH- 415 (482)
Q Consensus 342 ~~~gkvLl~KRp~-~gllaGLWEF-Pggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~-~~l~~v~H~--fth- 415 (482)
+.+|++|+.||.. ++.++|+|+| |||.++.||++ ++|+.||+.||+|+++. .. ..++.+.|. |++
T Consensus 41 ~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~ 111 (190)
T 1hzt_A 41 NAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN---EDAVIRRCRYELGVEIT------PPESIYPDFRYRATDPSG 111 (190)
T ss_dssp CTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCH---HHHHHHHHHHHHCCCBS------CCEEEETTCEEEEECTTS
T ss_pred cCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCH---HHHHHHHHHHHHCCCch------hhheeeeeEEEEeeCCCC
Confidence 5578999999974 4678999999 99999999887 89999999999999986 23 455666553 342
Q ss_pred --eEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccC------CCChHhHHHHhcc
Q 011579 416 --IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM------GLTSGVRKVMMGK 471 (482)
Q Consensus 416 --~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~------~fp~a~~kil~~L 471 (482)
.+..+++|.+. +.+.. .....|..+++|++.+++.++ .|++..+.+++.+
T Consensus 112 ~~~~~~~~~f~~~--~~~~~----~~~~~E~~~~~W~~~~el~~~~~~~~~~~~p~~~~~~~~~ 169 (190)
T 1hzt_A 112 IVENEVCPVFAAR--TTSAL----QINDDEVMDYQWCDLADVLHGIDATPWAFSPWMVMQATNR 169 (190)
T ss_dssp CEEEEECCEEEEE--BCSCC----CCCTTTEEEEEEECHHHHHHHHHHCGGGBCHHHHHHHHSH
T ss_pred CcceEEEEEEEEe--cCCCC----cCCccceeeEEEecHHHHHHHHHcChhhcCchHHHHHHHH
Confidence 24445667664 44421 123357788999999999775 4889999888876
No 60
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=99.26 E-value=2e-11 Score=109.67 Aligned_cols=113 Identities=11% Similarity=0.053 Sum_probs=77.5
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEE----EcCceE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVH----IFSHIR 417 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H----~fth~~ 417 (482)
+++++|||.||..+ .|.|+||||.+++||++ .+|+.||+.||.|+++. ....++.+.+ ......
T Consensus 21 n~~~e~LL~~r~~~---~~~W~lPgG~ve~gEt~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~ 88 (155)
T 3u53_A 21 NNAIEFLLLQASDG---IHHWTPPKGHVEPGEDD---LETALRETQEEAGIEAG------QLTIIEGFKRELNYVARNKP 88 (155)
T ss_dssp SCSEEEEEEEESSS---SCCEECSEEECCSSCCH---HHHHHHHHHHHHCCCGG------GEEEEEEEEEEEEEEETTEE
T ss_pred CCCcEEEEEEecCC---CCCEECCeeeccCCCCH---HHHHHHHHHHHHCCccc------cceeeeeEeeeeecCCCcce
Confidence 45679999999865 47899999999999988 89999999999999875 2333433332 233334
Q ss_pred EEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhc
Q 011579 418 LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMG 470 (482)
Q Consensus 418 l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~ 470 (482)
....+|.+. ..+.... ...+.|+.+++|++.+++.++...+.++.+|+.
T Consensus 89 ~~~~~~~~~--~~~~~~~--~~~~~E~~~~~W~~~~ea~~~~~~~~~~~~L~~ 137 (155)
T 3u53_A 89 KTVIYWLAE--VKDYDVE--IRLSHEHQAYRWLGLEEACQLAQFKEMKAALQE 137 (155)
T ss_dssp EEEEEEEEE--ESCTTCC--CCCCTTEEEEEEECHHHHHHHHCSHHHHHHHHH
T ss_pred eEEEEEEEE--EeccCCc--cCCCcceeEEEEeEHHHHHHHcCCHHHHHHHHH
Confidence 444555553 2322111 112357789999999998876666677777654
No 61
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=99.25 E-value=5.6e-12 Score=115.01 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=74.1
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEEEE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVE 423 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~~~ 423 (482)
+|++|+.+|...+..+|+|+||||.+++||++ ++|+.||+.||+|+ +. ....++.+.|..++....+++|
T Consensus 44 ~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~---~~aa~REl~EEtGl-~~------~~~~l~~~~~~~~~~~~~~~~f 113 (170)
T 1v8y_A 44 EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDP---LEAARRELAEQTGL-SG------DLTYLFSYFVSPGFTDEKTHVF 113 (170)
T ss_dssp TTEEEEEECCBTTTTBCCBBCSEEECCTTCCH---HHHHHHHHHHHHSE-EE------EEEEEEEEESCTTTBCCEEEEE
T ss_pred CCEEEEEEEEeCCCCCCEEECCccccCCCCCH---HHHHHHHHHHHHCC-Cc------CceeeEEEecCCCccccEEEEE
Confidence 78999999877778899999999999999887 89999999999999 65 4456777666666666667788
Q ss_pred EEEEEEeCCcccccccccCCCCeeeeeccCCcccC
Q 011579 424 LLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (482)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (482)
.+.. ..+... .....|..++.|++.+++.++
T Consensus 114 ~~~~-~~~~~~---~~~~~E~~~~~W~~~~el~~~ 144 (170)
T 1v8y_A 114 LAEN-LKEVEA---HPDEDEAIEVVWMRPEEALER 144 (170)
T ss_dssp EEEE-EEECC-----------CEEEEECHHHHHHH
T ss_pred EEEe-ccccCC---CCCCCceEEEEEEEHHHHHHH
Confidence 7753 222211 123467789999999988664
No 62
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=99.25 E-value=2.2e-12 Score=115.85 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=77.3
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccc-cEEEEcCceE---
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVG-EFVHIFSHIR--- 417 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~-~v~H~fth~~--- 417 (482)
+.+|++|+.||.. .+|+|+||||.++.+|++ ++|+.||+.||+|+++.. ....+. .+.|.|++..
T Consensus 23 ~~~~~vLl~~r~~---~~g~w~~PgG~ve~gE~~---~~aa~RE~~EEtGl~~~~-----~~~~~~~~~~~~~~~~~~~~ 91 (165)
T 1f3y_A 23 NNDKKIFAASRLD---IPDAWQMPQGGIDEGEDP---RNAAIRELREETGVTSAE-----VIAEVPYWLTYDFPPKVREK 91 (165)
T ss_dssp CTTSCEEEEEETT---EEEEEECCEEECCTTCCH---HHHHHHHHHHHHCCCSEE-----EEEECSSCCBCCCCHHHHHH
T ss_pred CCCCcEEEEecCC---CCCcEECCeeccCCCCCH---HHHHHHHHHHhhCCChhh-----hhcccccceeeecCcccccc
Confidence 5678999999974 359999999999999887 899999999999998641 000000 1345555321
Q ss_pred -----------EEEEEEEEEEEEeCCccccccc-----ccCCCCeeeeeccCCcccCCCC---hHhHHHHhcc
Q 011579 418 -----------LKVHVELLVLCIKGGIDKWVEK-----QDKGTLSWKCVDGGTLASMGLT---SGVRKVMMGK 471 (482)
Q Consensus 418 -----------l~L~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~Wv~~~eL~~~~fp---~a~~kil~~L 471 (482)
-..++|.+. +.+..... .. ...|+.+++|++.+++.++.++ +..+++++.|
T Consensus 92 ~~~~~~~~~~~~~~~~f~~~--~~~~~~~~-~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~l 161 (165)
T 1f3y_A 92 LNIQWGSDWKGQAQKWFLFK--FTGQDQEI-NLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVF 161 (165)
T ss_dssp HGGGSCSSCCSCBEEEEEEE--ECSCGGGC-CCCCCSSSCCSEEEEEEECHHHHHHHBCGGGHHHHHHHHHHH
T ss_pred ccccccccccCceEEEEEEE--ecCCcccc-cccCCCCCCChhheeEEecHHHHHHHhhhhhHHHHHHHHHHh
Confidence 134556664 33321111 01 2346788999999999998766 6666666554
No 63
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=99.24 E-value=4.9e-12 Score=117.43 Aligned_cols=116 Identities=13% Similarity=0.070 Sum_probs=81.8
Q ss_pred CCeEEEEecC------CCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCc--
Q 011579 344 DGVFILVKRR------DEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH-- 415 (482)
Q Consensus 344 ~gkvLl~KRp------~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth-- 415 (482)
+++||+.||. ..+..+|.|+||||.++.||++ ++|+.||+.||+|+++. ....++.+.+.+.+
T Consensus 45 ~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~l~~~~~~~~~~~ 115 (187)
T 3i9x_A 45 TLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESA---EQAAERELEEETSLTDI------PLIPFGVFDKPGRDPR 115 (187)
T ss_dssp EEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCH---HHHHHHHHHHHHCCCSC------CCEEEEEECCTTSSTT
T ss_pred CCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCH---HHHHHHHHHHHHCCCCc------ceEEEEEEcCCccCCC
Confidence 4799999995 3467899999999999999887 89999999999999876 33455544433321
Q ss_pred eEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 416 IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 416 ~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
..+...+|.+. +...... ......|..+++|++++++..++++..++.+++..
T Consensus 116 ~~~~~~~~~~~--~~~~~~~-~~~~~~E~~~~~W~~~~el~~~~l~~~~~~il~~a 168 (187)
T 3i9x_A 116 GWIISRAFYAI--VPPEALE-KRAAGDDAAEIGLFPMTEALELPLAFDHLDMLKKA 168 (187)
T ss_dssp SSEEEEEEEEE--CCHHHHH-HHHHSTTTTTEEEEEHHHHTTSCBSTTHHHHHHHH
T ss_pred CCEEEEEEEEE--EcCcccC-CcCCCCceeEEEEEeHHHcccCCCCccHHHHHHHH
Confidence 12223344432 2211100 01234677889999999999999999999988764
No 64
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=99.24 E-value=1.7e-12 Score=119.62 Aligned_cols=104 Identities=14% Similarity=0.030 Sum_probs=79.9
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
+.+|++|+.+|...+..+|+|+||||.++.||++ ++|+.||+.||+|+++. ....++.+.|..++.+..++
T Consensus 50 ~~~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~---~~aa~REl~EEtGl~~~------~~~~l~~~~~~~~~~~~~~~ 120 (182)
T 2yvp_A 50 TERGTALLVRQYRHPTGKFLLEVPAGKVDEGETP---EAAARRELREEVGAEAE------TLIPLPSFHPQPSFTAVVFH 120 (182)
T ss_dssp CTTSEEEEEEEEEGGGTEEEEECCEEECCTTCCH---HHHHHHHHHHHHCEECS------CEEECCCBCSCTTTBCCEEE
T ss_pred cCCCEEEEEEeccCCCCCcEEEeccccCCCCcCH---HHHHHHHHHHHhCCCcc------cEEEEEEEeCCCCccccEEE
Confidence 5678999999987778899999999999999887 89999999999999876 34567777676766666677
Q ss_pred EEEEEEEEe-CCcccccccccCCCCeeeeeccCCcccC
Q 011579 422 VELLVLCIK-GGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (482)
Q Consensus 422 ~~~~~~~~~-~~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (482)
+|.+.. .. .+.. .....|+.++.|++.+++.++
T Consensus 121 ~f~~~~-~~~~~~~---~~~~~E~~~~~W~~~~el~~~ 154 (182)
T 2yvp_A 121 PFLALK-ARVVTPP---TLEEGELLESLELPLTEVYAL 154 (182)
T ss_dssp EEEECS-CEECSCC---CCCTTCCEEEEEEEHHHHHHH
T ss_pred EEEEec-cccCCCC---CCCCCceEEEEEEEHHHHHHH
Confidence 777741 11 1111 123467889999999988664
No 65
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=99.23 E-value=3.5e-11 Score=118.90 Aligned_cols=106 Identities=10% Similarity=0.021 Sum_probs=82.6
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
..+|+|||.||...+ .|+|+||||.+|.||+. ++|+.||+.||.|+++. ....++.+.|.|+|.. +.
T Consensus 148 ~~~~~vLL~rr~~~~--~g~w~lPgG~vE~GEt~---eeAa~REv~EEtGl~v~------~~~~~~~~~~~~~~~~--~~ 214 (269)
T 1vk6_A 148 RRDDSILLAQHTRHR--NGVHTVLAGFVEVGETL---EQAVAREVMEESGIKVK------NLRYVTSQPWPFPQSL--MT 214 (269)
T ss_dssp EETTEEEEEEETTTC--SSCCBCEEEECCTTCCH---HHHHHHHHHHHHCCEEE------EEEEEEEEEEETTEEE--EE
T ss_pred EeCCEEEEEEecCCC--CCcEECCcCcCCCCCCH---HHHHHHHHHHHhCceee------eEEEEEEEecCCCCEE--EE
Confidence 346899999998654 79999999999999887 89999999999999986 4577888889999863 46
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhH
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVR 465 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~ 465 (482)
+|.+.+ .++... ....|..+++|++.+++..++++.+..
T Consensus 215 ~f~a~~--~~~~~~---~~~~E~~~~~W~~~~el~~l~~~~si~ 253 (269)
T 1vk6_A 215 AFMAEY--DSGDIV---IDPKELLEANWYRYDDLPLLPPPGTVA 253 (269)
T ss_dssp EEEEEE--EECCCC---CCTTTEEEEEEEETTSCCSCCCTTSHH
T ss_pred EEEEEE--CCCCcC---CCCcceEEEEEEEHHHhhhcccCcHHH
Confidence 666653 222211 223567789999999999998876543
No 66
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.22 E-value=1.6e-11 Score=123.85 Aligned_cols=117 Identities=17% Similarity=0.145 Sum_probs=81.7
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccE--EEEcC--c---
Q 011579 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEF--VHIFS--H--- 415 (482)
Q Consensus 343 ~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v--~H~ft--h--- 415 (482)
.+|++|+.||... ..+|+|+||||.+|.||++ ++|+.||+.||.|+++. ....++.+ .|.|+ +
T Consensus 212 ~~~~vLL~~r~~~-~~~g~w~lPgG~ve~gE~~---~~aa~REl~EEtGl~~~------~~~~~~~~~~~~~~~~~~~~~ 281 (341)
T 2qjo_A 212 QAGHVLMVRRQAK-PGLGLIALPGGFIKQNETL---VEGMLRELKEETRLKVP------LPVLRGSIVDSHVFDAPGRSL 281 (341)
T ss_dssp ETTEEEEEECCSS-SSTTCEECSEEECCTTSCH---HHHHHHHHHHHHCCSSC------HHHHHHTEEEEEEECCTTSCT
T ss_pred eCCEEEEEEecCC-CCCCeEECCCCcCCCCCCH---HHHHHHHHhhhhCCccc------cccccccccceEEEeCCCCCC
Confidence 4789999999864 4589999999999999887 89999999999999986 33444432 34444 2
Q ss_pred -eEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccC--CCChHhHHHHhccC
Q 011579 416 -IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM--GLTSGVRKVMMGKS 472 (482)
Q Consensus 416 -~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~--~fp~a~~kil~~L~ 472 (482)
.+..+++|.+. ..++.... ...+.|..+++|++.+++.++ ++++.++++++.+.
T Consensus 282 ~~~~~~~~f~~~--~~~~~~~~-~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~il~~~~ 338 (341)
T 2qjo_A 282 RGRTITHAYFIQ--LPGGELPA-VKGGDDAQKAWWMSLADLYAQEEQIYEDHFQIIQHFV 338 (341)
T ss_dssp TSCEEEEEEEEE--CCSSSCCC-CC------CEEEEEHHHHHHTGGGBCTTHHHHHHHHC
T ss_pred CCcEEEEEEEEE--ecCCCcCc-cCCCCceeeEEEeeHHHHhhhhhhhchHHHHHHHHHH
Confidence 23445666664 33322110 123357788999999999998 89999999998764
No 67
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=99.22 E-value=1.2e-11 Score=116.87 Aligned_cols=109 Identities=14% Similarity=0.092 Sum_probs=78.0
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEc---C--ceEE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF---S--HIRL 418 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~f---t--h~~l 418 (482)
+|+||+.||.. .|.|+||||+++.||++ .+|+.||+.||.|+++. ....++.+.+.+ + ..++
T Consensus 78 ~~~vLLv~r~~----~g~w~lPgG~ve~gEs~---~~aa~REl~EEtGl~v~------~~~~l~~~~~~~~~~~~~~~~~ 144 (205)
T 3q1p_A 78 NEKLLFVKEKS----DGKWALPGGWADVGYTP---TEVAAKEVFEETGYEVD------HFKLLAIFDKEKHQPSPSATHV 144 (205)
T ss_dssp TTEEEEEEC-------CCEECSEEECCTTCCH---HHHHHHHHHHHHSEEEE------EEEEEEEEEHHHHSCCCCSSCE
T ss_pred CCEEEEEEEcC----CCcEECCcCccCCCCCH---HHHHHHHHHHHHCCccc------cceEEEEEeccccCCCCCCceE
Confidence 78999999974 67999999999999887 89999999999999875 334444333211 1 1334
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 419 ~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
...+|.+.+ ..+. .. .+.|..+++|++.++|..+.+.+.++.++..+
T Consensus 145 ~~~~~~~~~-~~~~-~~----~~~E~~~~~w~~~~el~~l~~~~~~~~~i~~~ 191 (205)
T 3q1p_A 145 YKIFIGCEI-IGGE-KK----TSIETEEVEFFGENELPNLSIARNTEDQIKEM 191 (205)
T ss_dssp EEEEEEEEE-EEEC-CC----CCTTSCCEEEECTTSCCCBCTTTCCHHHHHHH
T ss_pred EEEEEEEEe-cCCc-cC----CCCcceEEEEEeHHHhhhcCCCccHHHHHHHH
Confidence 455667753 2332 11 12678899999999999999999888877665
No 68
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.22 E-value=2.5e-11 Score=123.18 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=84.0
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCccccccccccc--EEEEcC--c---
Q 011579 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGE--FVHIFS--H--- 415 (482)
Q Consensus 343 ~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~--v~H~ft--h--- 415 (482)
.+|++|+.||.... .+|+|+||||++|.||++ ++|+.||+.||.|+++. ....++. ..|.|+ +
T Consensus 217 ~~~~vLL~~r~~~~-~~g~w~lPgG~ve~gEt~---~~aa~REl~EEtGl~v~------~~~~~~~~~~~~~~~~~~~~~ 286 (352)
T 2qjt_B 217 VNDHILMVQRKAHP-GKDLWALPGGFLECDETI---AQAIIRELFEETNINLT------HEQLAIAKRCEKVFDYPDRSV 286 (352)
T ss_dssp ETTEEEEEEESSSS-STTCEECSEEECCTTSCH---HHHHHHHHHHHHCCSCC------HHHHHHHEEEEEEECCTTSCT
T ss_pred ECCEEEEEEEcCCC-CCCeEECCCCcCCCCCCH---HHHHHHHHHHhhCCCcc------cchhcceeeeeEEecCCCCCC
Confidence 46899999998654 589999999999999887 89999999999999875 2222221 234443 2
Q ss_pred -eEEEEEEEEEEEEEeCCcccccccccCCCCeeeeecc-CCcccC--CCChHhHHHHhccC
Q 011579 416 -IRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDG-GTLASM--GLTSGVRKVMMGKS 472 (482)
Q Consensus 416 -~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~-~eL~~~--~fp~a~~kil~~L~ 472 (482)
.+..+++|.+.+ .++..........|..+++|++. +++.++ .+++.++++++.+.
T Consensus 287 ~~~~~~~~f~~~~--~~~~~~~~~~~~~E~~~~~W~~~~~el~~~~~~~~~~~~~il~~~~ 345 (352)
T 2qjt_B 287 RGRTISHVGLFVF--DQWPSLPEINAADDAKDVKWISLGSNIKNICDRMLEDHYQIITILL 345 (352)
T ss_dssp TSEEEEEEEEEEE--CSCSSCCCCCCCTTEEEEEEEESSHHHHHTTTSBSTTHHHHHHHHH
T ss_pred CccEEEEEEEEEE--eCCCCCCccCCCccceEEEEecHHHHHHhhhhhhChhHHHHHHHHH
Confidence 344556677643 33220000012357788999999 999997 89999999988763
No 69
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=99.20 E-value=6.9e-12 Score=111.54 Aligned_cols=104 Identities=15% Similarity=0.032 Sum_probs=67.1
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
+.+|++|+.+|...+..+|+|+||||++++||++ ++|+.||+.||+|+++. ....++.+.+...+....++
T Consensus 14 ~~~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~---~~aa~REl~EEtGl~~~------~~~~l~~~~~~~~~~~~~~~ 84 (145)
T 2w4e_A 14 TAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDL---GAAAARELLEEVGGAAS------EWVPLPGFYPQPSISGVVFY 84 (145)
T ss_dssp ETTSEEEEEEEEETTTTEEEEECEEEECCTTCCH---HHHHHHHHHHHHCEECS------EEEECCCBBSCTTTCCCEEE
T ss_pred cCCCEEEEEEEEecCCCCCEEEeCCccCCCCCCH---HHHHHHHHHHhhCCccC------eEEEEecCcCCCCccCceEE
Confidence 4577887654332334578999999999999887 89999999999999875 33455554333333334456
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccC
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (482)
+|.+.. ..++.. .....|+.+++|++.+++.++
T Consensus 85 ~f~~~~-~~~~~~---~~~~~E~~~~~w~~~~el~~~ 117 (145)
T 2w4e_A 85 PLLALG-VTLGAA---QLEDTETIERVVLPLAEVYRM 117 (145)
T ss_dssp EEEEEE-EEEC-----------CEEEEEEEHHHHHHH
T ss_pred EEEEEe-cccCCC---CCCCCCeEEEEEEeHHHHHHH
Confidence 676642 222211 123467788999999988764
No 70
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=99.16 E-value=4.1e-11 Score=105.84 Aligned_cols=104 Identities=12% Similarity=0.154 Sum_probs=68.5
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEE-EEcCceEEEEEE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFV-HIFSHIRLKVHV 422 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~-H~fth~~l~L~~ 422 (482)
+|+||+.||.. .|+|+||||.++.||++ ++|+.||+.||+|+++.. ...+..+. +.+++... ++
T Consensus 16 ~~~vLl~~r~~----~g~w~~PgG~ve~gEs~---~~aa~RE~~EEtGl~~~~------~~~~~~~~~~~~~~~~~--~~ 80 (146)
T 2jvb_A 16 LSKILLVQGTE----SDSWSFPRGKISKDEND---IDCCIREVKEEIGFDLTD------YIDDNQFIERNIQGKNY--KI 80 (146)
T ss_dssp SSEEEEECCSS----SSCCBCCEECCCSSSCH---HHHHHHHHHHHTSCCCSS------SSCSSCEEEEEETTEEE--EE
T ss_pred CCEEEEEEEcC----CCcEECCcccCCCCCCH---HHHHHHHHHHHHCCCchH------hcccccccccccCCceE--EE
Confidence 48999999874 48999999999999887 899999999999998752 11222222 22333333 33
Q ss_pred EEEEEEEeCCccccccc-ccCCCCeeeeeccCCcccCCCChHhH
Q 011579 423 ELLVLCIKGGIDKWVEK-QDKGTLSWKCVDGGTLASMGLTSGVR 465 (482)
Q Consensus 423 ~~~~~~~~~~~~~~~~~-~~~e~~~~~Wv~~~eL~~~~fp~a~~ 465 (482)
|.+.. ..... . ..+ ...|+.+++|++.+++.++..+..++
T Consensus 81 ~~~~~-~~~~~-~-~~~~~~~E~~~~~W~~~~el~~~~~~~~~~ 121 (146)
T 2jvb_A 81 FLISG-VSEVF-N-FKPQVRNEIDKIEWFDFKKISKTMYKSNIK 121 (146)
T ss_dssp EEECC-CCSSS-C-CCCCCSSSCCCEEEEEHHHHHTGGGCSSCC
T ss_pred EEEEe-ccccc-c-CCcCCcchhheeEEeEHHHHHhhhcccchh
Confidence 33321 11110 1 011 24677899999999999877665544
No 71
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=99.13 E-value=5.2e-11 Score=112.06 Aligned_cols=102 Identities=14% Similarity=0.032 Sum_probs=74.8
Q ss_pred CeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEEEEE
Q 011579 345 GVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVEL 424 (482)
Q Consensus 345 gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~~~~ 424 (482)
+++|+.+|...+..+|+|+||||++++||++ ++|+.||+.||.|+++. ....++.+.+........+++|.
T Consensus 60 ~~vLLvrq~r~~~~~~~welPgG~ve~gEs~---~~aA~REl~EEtGl~~~------~~~~l~~~~~~~~~~~~~~~~f~ 130 (198)
T 1vhz_A 60 DHLILIREYAVGTESYELGFSKGLIDPGESV---YEAANRELKEEVGFGAN------DLTFLKKLSMAPSYFSSKMNIVV 130 (198)
T ss_dssp TEEEEEEEEETTTTEEEEECEEEECCTTCCH---HHHHHHHHHHHHSEEEE------EEEEEEEEECCTTTCCCEEEEEE
T ss_pred CEEEEEEcccCCCCCcEEEeCcccCCCCcCH---HHHHHHHHHHHHCCCcC------ceEEEEEEeCCCCccCcEEEEEE
Confidence 3999988766677799999999999999887 89999999999999875 34566666655554445567777
Q ss_pred EEEEEeCCcccccccccCCCCeeeeeccCCcccCC
Q 011579 425 LVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMG 459 (482)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~ 459 (482)
+.. ..+... .....|..+..|++.+++.++-
T Consensus 131 a~~-~~~~~~---~~~~~E~~~~~w~~~~el~~~~ 161 (198)
T 1vhz_A 131 AQD-LYPESL---EGDEPEPLPQVRWPLAHMMDLL 161 (198)
T ss_dssp EEE-EEECCC---CCCCSSCCCEEEEEGGGGGGGG
T ss_pred EEe-CCcccC---CCCCCceEEEEEEEHHHHHHHH
Confidence 753 222111 1223567789999999987754
No 72
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=99.12 E-value=7.7e-11 Score=110.55 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=69.0
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCccccccccccc-EEEEcCceEEE-
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGE-FVHIFSHIRLK- 419 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~-v~H~fth~~l~- 419 (482)
..+++||+.||... ++|.|+||||+++.||++ ++|+.||+.||.|+++. ....++. ..|.++.....
T Consensus 36 ~~~~~vLL~~r~~~--~~g~w~lPGG~ve~gEs~---~~aA~REl~EEtGl~~~------~~~l~~~~~~~~~~~~~~~~ 104 (199)
T 3h95_A 36 ESTRKILVVQDRNK--LKNMWKFPGGLSEPEEDI---GDTAVREVFEETGIKSE------FRSVLSIRQQHTNPGAFGKS 104 (199)
T ss_dssp TTTTEEEEEEESSS--STTSBBCCEEECCTTCCH---HHHHHHHHHHHHCCCEE------EEEEEEEEECC---------
T ss_pred CCCCEEEEEEEcCC--CCCCEECCccccCCCCCH---HHHHHHHHHHHhCCccc------cceEEEEEeeecCCCCceeE
Confidence 45689999999753 589999999999999887 89999999999999875 2233331 11344432222
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHh
Q 011579 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGV 464 (482)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~ 464 (482)
..+|.+.+. .+. ... .+...|..+++|++.+++.++....+.
T Consensus 105 ~~~~~~~~~-~~~-~~~-~~~~~E~~~~~W~~~~el~~~~~~~~~ 146 (199)
T 3h95_A 105 DMYIICRLK-PYS-FTI-NFCQEECLRCEWMDLNDLAKTENTTPI 146 (199)
T ss_dssp CEEEEEEEE-ESC-CCC-CCCTTTEEEEEEEEHHHHHHCSSBCHH
T ss_pred EEEEEEEEc-CCC-ccc-CCCccceeeeEEEeHHHHhhhhhcChH
Confidence 223344322 111 111 223467788999999999887654433
No 73
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=99.12 E-value=2.9e-10 Score=106.38 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=70.2
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCC-CCCCcccccccccccE-EEEc--------
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLD-PRNNCSIILREDVGEF-VHIF-------- 413 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~-~~~~~~~~~~~~l~~v-~H~f-------- 413 (482)
+++||+.+|+. .|.|+||||+++.||++ ++|+.||+.||.|++ +.- ....+..+ .|.+
T Consensus 57 ~~~vLL~~r~~----~g~w~lPgG~ve~gEs~---~eaa~REl~EEtGl~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 124 (197)
T 3fcm_A 57 RNKFLMIHHNI----YNSWAWTGGHSDNEKDQ---LKVAIKELKEETGVKNPTP-----LLDKAFALDVLTVNGHIKRGK 124 (197)
T ss_dssp SCEEEEEEETT----TTEEECEEEECTTCCBH---HHHHHHHHHHHHCCSSCEE-----SCSSCSEEEEEEECCEEETTE
T ss_pred CCEEEEEEecC----CCCEECCccccCCCCCH---HHHHHHHHHHHHCCCcccc-----cCCCceEEEEeeecCccccCc
Confidence 35999999873 56999999999999888 899999999999998 320 00111111 1222
Q ss_pred ---CceEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 414 ---SHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 414 ---th~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
.|.++. .+|.+. ...+.. ...+..|+.+++|++++++.++...+.+++++..+
T Consensus 125 ~~~~~~~~~-~~~~~~--~~~~~~--~~~~~~E~~~~~W~~~~el~~~~~~~~~~~il~~~ 180 (197)
T 3fcm_A 125 YVSSHLHLN-LTYLIE--CSEDET--LMLKEDENSGVMWIPFNEISKYCSEPHMIPIYEKL 180 (197)
T ss_dssp EECCEEEEE-EEEEEE--CCTTSC--CCCCC----CEEEEEGGGHHHHCCCGGGHHHHHHH
T ss_pred ccCCceeEE-EEEEEE--eCCCcc--cCCCcccccceEEccHHHHHhhcCCHHHHHHHHHH
Confidence 123322 233432 232211 12334678889999999999998888887777654
No 74
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=99.11 E-value=1.3e-11 Score=116.71 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=73.4
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccC-CCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEE-E
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILD-GETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRL-K 419 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve-~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l-~ 419 (482)
+.+|+|||.+|...+..+|+|+||||.++ .||++ ++|+.||+.||+|+++. ....++.+ |.++++.. .
T Consensus 52 ~~~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~---~~aa~REl~EEtGl~~~------~~~~l~~~-~~~~~~~~~~ 121 (207)
T 1mk1_A 52 DDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPP---HLTAARELREEVGLQAS------TWQVLVDL-DTAPGFSDES 121 (207)
T ss_dssp CTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCH---HHHHHHHHHHHHCEEEE------EEEEEEEE-CSCTTTBCCC
T ss_pred cCCCEEEEEEeecCCCCCcEEEeCCccccCCCCCH---HHHHHHHHHHHHCCccc------ccEEEEEE-EcCCCccccE
Confidence 45789999998877788999999999999 89887 89999999999999875 33455544 66666543 4
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCC
Q 011579 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGL 460 (482)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~f 460 (482)
+++|.+.. ..+.... ......|+.++.|++.+++.++-+
T Consensus 122 ~~~f~~~~-~~~~~~~-~~~~~~E~~~~~Wv~~~el~~~~~ 160 (207)
T 1mk1_A 122 VRVYLATG-LREVGRP-EAHHEEADMTMGWYPIAEAARRVL 160 (207)
T ss_dssp EEEEEEEE-EEECCC-----------CEEEEEHHHHHHHHH
T ss_pred EEEEEEEc-cccCCCC-CCCCCCceEEEEEEEHHHHHHHHH
Confidence 67777753 2221111 002235677899999999877543
No 75
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=99.10 E-value=3.4e-11 Score=114.58 Aligned_cols=105 Identities=14% Similarity=0.086 Sum_probs=73.5
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCC-ChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGET-DITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKV 420 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e-~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L 420 (482)
+.++++|+.|| ++|+|+||||+++.|| ++ ++|+.||+.||.|+++.... ......++.+.|.|+ .++.+
T Consensus 53 ~~~~~vLl~~r-----~~g~w~~PGG~ve~gE~t~---~~aa~REl~EEtGl~~~~~~-l~~~~~~~~~~~~~~-~~~~~ 122 (212)
T 1u20_A 53 PIRRVLLMMMR-----FDGRLGFPGGFVDTRDISL---EEGLKRELEEELGPALATVE-VTEDDYRSSQVREHP-QKCVT 122 (212)
T ss_dssp ECCEEEEEEEE-----TTSCEECSEEEECTTTSCH---HHHHHHHHHHHHCGGGGGCC-CCGGGEEEEEEECTT-SCEEE
T ss_pred ecCCEEEEEEe-----CCCeEECCCcccCCCCCCH---HHHHHHHHHHHHCCCccccc-eeeeeEEEeccccCC-CcEEE
Confidence 45679999998 5899999999999998 77 89999999999999875110 001235777888888 56677
Q ss_pred EEEEEEEEEeCCccccc-------ccccCCCCeeeeeccCCcccC
Q 011579 421 HVELLVLCIKGGIDKWV-------EKQDKGTLSWKCVDGGTLASM 458 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~~~-------~~~~~e~~~~~Wv~~~eL~~~ 458 (482)
++|.+.+ .++..... ...+.+..+..|++.+++.+.
T Consensus 123 ~~f~~~~--~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~ 165 (212)
T 1u20_A 123 HFYIKEL--KLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDR 165 (212)
T ss_dssp EEEEEEC--CHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTS
T ss_pred EEEEEEe--cCCCcccccccccccccCCcceEEEEEEEHHHhhhh
Confidence 8888753 22111100 011234456899999999764
No 76
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=99.09 E-value=1.9e-10 Score=111.67 Aligned_cols=113 Identities=13% Similarity=0.071 Sum_probs=82.9
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCC--CCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEc--CceEE
Q 011579 343 PDGVFILVKRRDEGLLAGLWEFPSIILDG--ETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF--SHIRL 418 (482)
Q Consensus 343 ~~gkvLl~KRp~~gllaGLWEFPggkve~--~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~f--th~~l 418 (482)
.+++||+.||.. ..++|.|+||||.++. +|+. ++|+.||+.||.|+++. ..+.++.+.+.+ +..++
T Consensus 35 ~~~~vLLv~R~~-~~~~g~W~lPGG~ve~~~gEs~---~~AA~REl~EEtGl~~~------~~~~l~~~~~~~r~~~~~~ 104 (240)
T 3gz5_A 35 QQLKVLLVQRSN-HPFLGLWGLPGGFIDETCDESL---EQTVLRKLAEKTAVVPP------YIEQLCTVGNNSRDARGWS 104 (240)
T ss_dssp TEEEEEEEECCS-SSSTTCEECSEEECCTTTCSBH---HHHHHHHHHHHHSSCCS------EEEEEEEEEESSSSTTSCE
T ss_pred CCcEEEEEECcC-CCCCCCEECCccccCCCCCcCH---HHHHHHHHHHHHCCCCC------ceeeEEEeCCCccCCCceE
Confidence 356999999984 5679999999999999 8877 89999999999999875 445666665543 22233
Q ss_pred EEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhc
Q 011579 419 KVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMG 470 (482)
Q Consensus 419 ~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~ 470 (482)
...+|.+. +.++.. .....++.++.|++.+++...+++..++.|++.
T Consensus 105 ~~~~y~a~--~~~~~~---~~~~~e~~~~~W~~~~el~~~~l~~dh~~il~~ 151 (240)
T 3gz5_A 105 VTVCYTAL--MSYQAC---QIQIASVSDVKWWPLADVLQMPLAFDHLQLIEQ 151 (240)
T ss_dssp EEEEEEEE--CCHHHH---HHHHTTCTTEEEEEHHHHTTSCCSTTHHHHHHH
T ss_pred EEEEEEEE--eccccc---CCCCCcccceEEecHHHcccCCcchhHHHHHHH
Confidence 34455553 222111 123467788999999999988888888888765
No 77
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=99.09 E-value=1.7e-10 Score=110.90 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=73.1
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCc--eEEEE
Q 011579 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH--IRLKV 420 (482)
Q Consensus 343 ~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth--~~l~L 420 (482)
.+++||+.||.. ...+|.|+||||.++.||+. ++|+.||+.||.|+++. ..+.++.+.+.+.+ .++..
T Consensus 26 ~~~~vLLv~r~~-~~~~g~w~lPGG~ve~gEs~---~~Aa~REl~EEtGl~~~------~~~~l~~~~~~~r~~~~~~v~ 95 (226)
T 2fb1_A 26 GEISLLLLKRNF-EPAMGEWSLMGGFVQKDESV---DDAAKRVLAELTGLENV------YMEQVGAFGAIDRDPGERVVS 95 (226)
T ss_dssp TEEEEEEEECSS-SSSTTCEECEEEECCTTSCH---HHHHHHHHHHHHCCCSC------EEEEEEEECCTTSSSSSCEEE
T ss_pred CCCEEEEEECcC-CCCCCCEECCeeccCCCCCH---HHHHHHHHHHHHCCCCC------ceEEEEEeCCCCcCCCceEEE
Confidence 468999999976 46789999999999999887 89999999999999875 34455554433321 22222
Q ss_pred EEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCC
Q 011579 421 HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLT 461 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp 461 (482)
.+|.+. +.++... ..+.++.+++|++.+++.++.|.
T Consensus 96 ~~y~a~--~~~~~~~---~~~~e~~~~~W~~~~el~~l~~d 131 (226)
T 2fb1_A 96 IAYYAL--ININEYD---RELVQKHNAYWVNINELPALIFD 131 (226)
T ss_dssp EEEEEE--CCTTSSC---HHHHHHTTEEEEETTSCCCBSTT
T ss_pred EEEEEE--ecCcccc---cCCccccceEEEEHHHhhhccCC
Confidence 345553 3332211 12245678999999999988876
No 78
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=99.00 E-value=1.6e-09 Score=98.49 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=67.3
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEE----EEcCc--
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFV----HIFSH-- 415 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~----H~fth-- 415 (482)
+.+|++|+.+|.. .|.|+||||.++.||++ ++|+.||+.||+|+++. ....++.+. +.++.
T Consensus 17 ~~~~~vLl~~r~~----~~~w~~p~G~~e~gE~~---~~aa~RE~~EE~G~~~~------~~~~~~~~~~~~~~~~~~~~ 83 (164)
T 2kdv_A 17 NRQGQVMWARRFG----QHSWQFPQGGINPGESA---EQAMYRELFEEVGLSRK------DVRILASTRNWLRYKLPKRL 83 (164)
T ss_dssp CTTSEEEEEEETT----CCCEECCEEECCTTCCH---HHHHHHHHHHHHCCCGG------GEEEEEECSSCEEEECCTTT
T ss_pred ccCCEEEEEEEcC----CCeEECCeeecCCCCCH---HHHHHHHHHHHHCCCcc------ceEEEEEecceeEEecCcce
Confidence 5578999999974 68999999999999887 89999999999999875 233444432 33332
Q ss_pred ---------eEEEEEEEEEEEEEeCCcccc-ccc-ccCCCCeeeeeccCCccc
Q 011579 416 ---------IRLKVHVELLVLCIKGGIDKW-VEK-QDKGTLSWKCVDGGTLAS 457 (482)
Q Consensus 416 ---------~~l~L~~~~~~~~~~~~~~~~-~~~-~~~e~~~~~Wv~~~eL~~ 457 (482)
..-..++|.+. +.++.... ... ...|..+++|++.+++..
T Consensus 84 ~~~~~~~~~~~~~~~~f~~~--~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~ 134 (164)
T 2kdv_A 84 VRWDTKPVCIGQKQKWFLLQ--LVSGDAEINMQTSSTPEFDGWRWVSYWYPVR 134 (164)
T ss_dssp CCTTSSSCCCEEEEEEEEEE--ESSCGGGCCSCSSSSCSEEEEEEEETTTGGG
T ss_pred eeeccCcccccceeEEEEEE--ecCCccccccCCCCCchhceEEEecHHHhhh
Confidence 12234566664 33322110 011 124667899999888644
No 79
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=98.98 E-value=2.4e-10 Score=117.22 Aligned_cols=114 Identities=12% Similarity=-0.053 Sum_probs=81.1
Q ss_pred CCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCc-------
Q 011579 343 PDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH------- 415 (482)
Q Consensus 343 ~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth------- 415 (482)
.+.+||+.+|+.. |.|+||||++|.||++ ++|+.||+.||.|+++. ....++.+.|.|++
T Consensus 36 ~~~~vLLv~r~~~----g~W~lPgG~ve~gEs~---~~AA~REl~EEtGl~~~------~~~~l~~~~~~~~~~g~~~~~ 102 (364)
T 3fjy_A 36 DSIEVCIVHRPKY----DDWSWPKGKLEQNETH---RHAAVREIGEETGSPVK------LGPYLCEVEYPLSEEGKKTRH 102 (364)
T ss_dssp TTEEEEEEEETTT----TEEECCEEECCTTCCH---HHHHHHHHHHHHSCCEE------EEEEEEEEC------------
T ss_pred CceEEEEEEcCCC----CCEECCcCCCCCCCCH---HHHHHHHHHHHhCCeee------eccccceEEEeccCCCccccc
Confidence 4569999999653 8999999999999887 89999999999999986 45667777777763
Q ss_pred ------eEEEEEEEEEEEEEeCCcc---------cccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 416 ------IRLKVHVELLVLCIKGGID---------KWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 416 ------~~l~L~~~~~~~~~~~~~~---------~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
....+++|.+. ..++.. .....+..|..+++|++.+++..+...+.++.+++.+
T Consensus 103 ~~~~~~~~~~~~~f~~~--~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~r~il~~~ 171 (364)
T 3fjy_A 103 SHDCTADTKHTLYWMAQ--PISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHSTDKDTLAVF 171 (364)
T ss_dssp ---------CEEEEEEE--ECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCHHHHHHHHHH
T ss_pred ccccccCceEEEEEEEE--ecCCccccccccccCccccCCccceeeeecCcHHHHHHHhcchhhHHHHHHH
Confidence 13445666664 232210 0001233678899999999999999999999888775
No 80
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=98.94 E-value=2.6e-09 Score=103.32 Aligned_cols=123 Identities=12% Similarity=0.030 Sum_probs=81.8
Q ss_pred cCCCeEEEEecCCC-CCCCcccccCc-cccCCC------CChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEc
Q 011579 342 QPDGVFILVKRRDE-GLLAGLWEFPS-IILDGE------TDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF 413 (482)
Q Consensus 342 ~~~gkvLl~KRp~~-gllaGLWEFPg-gkve~~------e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~f 413 (482)
+.+|++||.||... ..++|+|+||+ |.++.| |++...++|+.||+.||+|+.+... .......++.+.|.+
T Consensus 68 ~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v-~~~~l~~l~~~~y~~ 146 (235)
T 2dho_A 68 NTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEV-PPEEINYLTRIHYKA 146 (235)
T ss_dssp CTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGS-CGGGSEEEEEEEEEE
T ss_pred cCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCcccc-ChhhcEEEEEEEEec
Confidence 56789999999865 46899999994 989887 4321247999999999999986310 000124566666555
Q ss_pred Cc----e-EEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccC---------CCChHhHHHHhcc
Q 011579 414 SH----I-RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM---------GLTSGVRKVMMGK 471 (482)
Q Consensus 414 th----~-~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~---------~fp~a~~kil~~L 471 (482)
+. . +-..++|.+. ..+.. .++..|..+++|++.+++..+ .|.+..+.+++.+
T Consensus 147 ~~~~~~~~~e~~~vf~~~--~~~~~----~~~~~Ev~~~~wv~~~el~~~l~~~~~~~~~ftp~~~~i~~~~ 212 (235)
T 2dho_A 147 QSDGIWGEHEIDYILLVR--MNVTL----NPDPNEIKSYCYVSKEELKELLKKAASGEIKITPWFKIIAATF 212 (235)
T ss_dssp ECSSSBEEEEEEEEEEEE--CCCCC----CCCTTTEEEEEEECHHHHHHHHHHHHTTSSCBCHHHHHHHHHT
T ss_pred cCCCccceeEEEEEEEEE--ECCCC----cCChHHEEEEEEEcHHHHHHHHhhccCCCcEECHhHHHHHHHH
Confidence 32 1 1123566553 33311 234467889999999998653 6888888777664
No 81
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=98.93 E-value=3.2e-09 Score=104.90 Aligned_cols=101 Identities=16% Similarity=0.111 Sum_probs=65.3
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccE-EEEcCceEEEEEE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEF-VHIFSHIRLKVHV 422 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v-~H~fth~~l~L~~ 422 (482)
+|+||+.||... +|.|+||||++++||++ ++|+.||+.||.|+++.. ...+... ...+++..+ ++
T Consensus 113 ~~~vLLv~r~~~---~g~W~lPgG~ve~gEs~---~eAA~REl~EEtGl~~~~------l~~~~~~~~~~~~~~~~--~~ 178 (271)
T 2a6t_A 113 MQQCVLVKGWKA---SSGWGFPKGKIDKDESD---VDCAIREVYEETGFDCSS------RINPNEFIDMTIRGQNV--RL 178 (271)
T ss_dssp SSEEEEEEESST---TCCCBCSEEECCTTCCH---HHHHHHHHHHHHCCCCTT------TCCTTCEEEEEETTEEE--EE
T ss_pred CCEEEEEEEeCC---CCeEECCcccCCCCcCH---HHHHHHHHHHHhCCCcee------eeeeeeeccCCcCCceE--EE
Confidence 589999999653 58999999999999888 899999999999999862 1122221 123445433 55
Q ss_pred EEEEEEEeCCccccccc-ccCCCCeeeeeccCCcccCCCC
Q 011579 423 ELLVLCIKGGIDKWVEK-QDKGTLSWKCVDGGTLASMGLT 461 (482)
Q Consensus 423 ~~~~~~~~~~~~~~~~~-~~~e~~~~~Wv~~~eL~~~~fp 461 (482)
|.+.. ...... ..+ ...|..+++|++.+++.++.+.
T Consensus 179 f~~~~-~~~~~~--~~~~~~~E~~~~~W~~~~el~~~~~~ 215 (271)
T 2a6t_A 179 YIIPG-ISLDTR--FESRTRKEISKIEWHNLMDLPTFKKN 215 (271)
T ss_dssp EEECC-CCTTCC--CC------EEEEEEEEGGGSTTCC--
T ss_pred EEEEE-ecCccc--CCCCCccceeEEEEEEHHHHHHHHhc
Confidence 55532 111110 011 3357788999999999887654
No 82
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=98.91 E-value=4.4e-09 Score=102.50 Aligned_cols=123 Identities=13% Similarity=0.004 Sum_probs=81.4
Q ss_pred cCCCeEEEEecCCCC-CCCcccccCc-cccCCC------CChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEc
Q 011579 342 QPDGVFILVKRRDEG-LLAGLWEFPS-IILDGE------TDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIF 413 (482)
Q Consensus 342 ~~~gkvLl~KRp~~g-llaGLWEFPg-gkve~~------e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~f 413 (482)
+.+|++||.||...+ .++|+|+||+ |.++.| |++...++|+.||+.||+|+.+... .......++.+.|.+
T Consensus 79 ~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v-~~~~l~~l~~~~y~~ 157 (246)
T 2pny_A 79 NTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQI-SPEDIVFMTIYHHKA 157 (246)
T ss_dssp CTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTC-CGGGSEEEEEEEEEE
T ss_pred eCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCcccc-CccccEEEEEEEEEe
Confidence 567899999998654 6899999996 888877 4332237999999999999986410 000123566666554
Q ss_pred Cc----e-EEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccC---------CCChHhHHHHhcc
Q 011579 414 SH----I-RLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM---------GLTSGVRKVMMGK 471 (482)
Q Consensus 414 th----~-~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~---------~fp~a~~kil~~L 471 (482)
+. . +-..++|.+. ..+.. .++..|..+++|++++++..+ .|.+..+.+++.+
T Consensus 158 ~~~~~~~~~e~~~vf~~~--~~~~~----~~~~~Ev~~~~wv~~eel~~~l~~~~~~~~~ftp~~~~i~~~~ 223 (246)
T 2pny_A 158 KSDRIWGEHEICYLLLVR--KNVTL----NPDPSETKSILYLSQEELWELLEREARGEVKVTPWLRTIAERF 223 (246)
T ss_dssp ESSSSBEEEEEEEEEEEE--CCCCC----CCCTTTEEEEEEECHHHHHHHHHHHHHTSSCBCHHHHHHHHHT
T ss_pred cCCCceeeeEEEEEEEEE--ECCCC----CCChHHeeEEEEEeHHHHHHHHHhccCCCceECHhHHHHHHHH
Confidence 31 1 1224556553 33311 234467889999999998653 7888777776654
No 83
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=98.90 E-value=7.1e-10 Score=103.16 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=50.4
Q ss_pred eEEEEecCCCCCCCcccccCccccCCCC-ChhhHHHHHHHHHHhhcCC-CCCCCcccccccccccEEEEcCceEEEEEEE
Q 011579 346 VFILVKRRDEGLLAGLWEFPSIILDGET-DITTRREAAECFLKKSFNL-DPRNNCSIILREDVGEFVHIFSHIRLKVHVE 423 (482)
Q Consensus 346 kvLl~KRp~~gllaGLWEFPggkve~~e-~~~~~~~AL~rel~Eelgi-~~~~~~~~~~~~~l~~v~H~fth~~l~L~~~ 423 (482)
.||+..|- +|+|||||||||.+| +. ++||.||+.||+|+ .+. ..+++..+.|.|+ .++.+++|
T Consensus 45 ~iLmQ~R~-----~G~weFPGGkVe~gE~t~---e~aL~REl~EElg~~~V~------~~~y~~s~~~~yp-~~V~LHfY 109 (214)
T 3kvh_A 45 SVLMQMRF-----DGLLGFPGGFVDRRFWSL---EDGLNRVLGLGLGCLRLT------EADYLSSHLTEGP-HRVVAHLY 109 (214)
T ss_dssp EEEEEEET-----TSCEECSEEEECTTTCCH---HHHHHHSCCSCC---CCC------GGGEEEEEEC-----CEEEEEE
T ss_pred eEEEeeee-----CCEEeCCCccCCCCCCCH---HHHHHHHHHHhhCCeeee------eeeeEEEEeccCC-CEEEEEEE
Confidence 46677764 499999999999998 66 89999999999997 454 4577888888898 57889999
Q ss_pred EEEE
Q 011579 424 LLVL 427 (482)
Q Consensus 424 ~~~~ 427 (482)
.|.+
T Consensus 110 ~crl 113 (214)
T 3kvh_A 110 ARQL 113 (214)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9964
No 84
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=98.89 E-value=8.8e-10 Score=104.46 Aligned_cols=107 Identities=8% Similarity=-0.029 Sum_probs=65.6
Q ss_pred CCCeEEEEe--cCCCC---CCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceE
Q 011579 343 PDGVFILVK--RRDEG---LLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIR 417 (482)
Q Consensus 343 ~~gkvLl~K--Rp~~g---llaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~ 417 (482)
.+|+||+.+ |+..+ ..+++||||||++++||++ ++|+.||+.||.|+.+. ....++.+.+.-....
T Consensus 68 ~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~---~~aA~REl~EEtGl~~~------~~~~l~~~~~~~g~~~ 138 (209)
T 1g0s_A 68 VRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESV---EDVARREAIEEAGLIVK------RTKPVLSFLASPGGTS 138 (209)
T ss_dssp TTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCH---HHHHHHHHHHHHCCCCC------CEEEEEEEESCTTTBC
T ss_pred CCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCH---HHHHHHHHHHHcCcccC------cEEEeEEEecCCCccC
Confidence 468898854 43322 1268999999999999888 89999999999999985 3345555422222223
Q ss_pred EEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccC
Q 011579 418 LKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASM 458 (482)
Q Consensus 418 l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (482)
..+++|.+.+...............|..++.|++.+++.++
T Consensus 139 ~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~ 179 (209)
T 1g0s_A 139 ERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW 179 (209)
T ss_dssp CEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHH
T ss_pred cEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHH
Confidence 44577766421110000000122356678999999887653
No 85
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=98.89 E-value=6.4e-10 Score=103.83 Aligned_cols=103 Identities=8% Similarity=-0.066 Sum_probs=68.2
Q ss_pred CCCeEEEEecCCCCC------CCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCce
Q 011579 343 PDGVFILVKRRDEGL------LAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHI 416 (482)
Q Consensus 343 ~~gkvLl~KRp~~gl------laGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~ 416 (482)
.+|++|+.++...+. -+|.|+||||+++ ||++ ++|+.||+.||.|+++. ....++.+.+...+.
T Consensus 56 ~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~---~~aa~REl~EEtG~~~~------~~~~l~~~~~~~~~~ 125 (191)
T 3o6z_A 56 KKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEP---EVCIRKEAIEETGYEVG------EVRKLFELYMSPGGV 125 (191)
T ss_dssp TTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCH---HHHHHHHHHHHC-CCCS------CEEEEEEEESCTTTB
T ss_pred CCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCH---HHHHHHHHHHHhCCccC------cEEEEEEEEeCCCcc
Confidence 358999877643322 6889999999999 9887 89999999999999985 345566554444444
Q ss_pred EEEEEEEEEEEEEeCCccc--ccccccCCCCeeeeeccCCcccC
Q 011579 417 RLKVHVELLVLCIKGGIDK--WVEKQDKGTLSWKCVDGGTLASM 458 (482)
Q Consensus 417 ~l~L~~~~~~~~~~~~~~~--~~~~~~~e~~~~~Wv~~~eL~~~ 458 (482)
...+++|.+.. ...... .... ..|..++.|++.+++.++
T Consensus 126 ~~~~~~f~~~~--~~~~~~~~~~~~-~~E~~~~~w~~~~el~~~ 166 (191)
T 3o6z_A 126 TELIHFFIAEY--SDNQRANAGGGV-EDEAIEVLELPFSQALEM 166 (191)
T ss_dssp CCEEEEEEEEC--CTTCC---------CCSSEEEEEEHHHHHHH
T ss_pred CcEEEEEEEEE--cccccccCCCCC-CCcEEEEEEEEHHHHHHH
Confidence 45567777642 221100 0011 467889999999887653
No 86
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=98.89 E-value=1.4e-09 Score=101.92 Aligned_cols=114 Identities=12% Similarity=0.047 Sum_probs=73.5
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~ 421 (482)
+.+++||+.||... +|.|+||||+++.||++ ++|+.||+.||+|+++. ....++.+.+ +.+.. .++
T Consensus 51 ~~~~~vLLv~r~~~---~g~W~lPgG~ve~gEt~---~eaa~REl~EEtGl~~~------~~~~l~~~~~-~~~~~-~~~ 116 (194)
T 2fvv_A 51 ESEEEVLLVSSSRH---PDRWIVPGGGMEPEEEP---SVAAVREVCEEAGVKGT------LGRLVGIFEN-QERKH-RTY 116 (194)
T ss_dssp TTCCEEEEEECSSC---TTSEECSEEECCTTCCH---HHHHHHHHHHHHCEEEE------EEEEEEEEEE-TTTTE-EEE
T ss_pred CCCCEEEEEEEeCC---CCcEECCCCcCCCCcCH---HHHHHHHHHHHhCCccc------cceEEEEEEc-CCCce-EEE
Confidence 34689999998753 48999999999999887 89999999999999875 3455665554 33322 356
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCC--CChHhHHHHhccC
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMG--LTSGVRKVMMGKS 472 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~--fp~a~~kil~~L~ 472 (482)
+|.+.+ .+.... .+....++.+++|++.+++..+- -...+.+.+..|.
T Consensus 117 ~f~~~~--~~~~~~-~~~~~e~~~~~~W~~~~el~~~l~~~~~~~~~~l~~l~ 166 (194)
T 2fvv_A 117 VYVLIV--TEVLED-WEDSVNIGRKREWFKIEDAIKVLQYHKPVQASYFETLR 166 (194)
T ss_dssp EEEEEE--EEECSS-CHHHHHHCCCEEEEEHHHHHHHHTTTCHHHHHHTCC--
T ss_pred EEEEEE--ccccCC-CCCcccccceEEEEEHHHHHHHHhcCcHHHHHHHHHHh
Confidence 666643 221111 01111234678999999987632 2244555555553
No 87
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=98.84 E-value=3.7e-09 Score=100.17 Aligned_cols=103 Identities=15% Similarity=0.075 Sum_probs=65.2
Q ss_pred CeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEE--EEcCceEEEEEE
Q 011579 345 GVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFV--HIFSHIRLKVHV 422 (482)
Q Consensus 345 gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~--H~fth~~l~L~~ 422 (482)
+++|+.++-..+.-+|+||||||.+++||++ ++|+.||+.||.|+.+. ....++.+. +.|++..+ ++
T Consensus 77 ~~vlLv~q~R~~~~~~~welPgG~ve~gEs~---~~aA~REl~EEtGl~~~------~~~~l~~~~~~~~~~~~~~--~~ 145 (212)
T 2dsc_A 77 ECIVLVKQFRPPMGGYCIEFPAGLIDDGETP---EAAALRELEEETGYKGD------IAECSPAVCMDPGLSNCTI--HI 145 (212)
T ss_dssp CEEEEEEEEEGGGTEEEEECCEEECCTTCCH---HHHHHHHHHHHHCCCCE------EEEECCCEESCTTTBCCEE--EE
T ss_pred cEEEEEEeecCCCCCcEEECCccccCCCCCH---HHHHHHHHHHHhCCCcc------ceEEeccEEcCCCccCceE--EE
Confidence 5787766322234478999999999999887 89999999999999875 233444332 12444444 45
Q ss_pred EEEEEEEeCCcc--cccccccCCCCeeeeeccCCcccC
Q 011579 423 ELLVLCIKGGID--KWVEKQDKGTLSWKCVDGGTLASM 458 (482)
Q Consensus 423 ~~~~~~~~~~~~--~~~~~~~~e~~~~~Wv~~~eL~~~ 458 (482)
|.+.+....... ........|..++.|++.+++.++
T Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 183 (212)
T 2dsc_A 146 VTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQR 183 (212)
T ss_dssp EEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHHHH
T ss_pred EEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHHHH
Confidence 555332211100 001123467889999999998654
No 88
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=98.74 E-value=5e-08 Score=96.25 Aligned_cols=97 Identities=9% Similarity=0.030 Sum_probs=63.9
Q ss_pred CCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCc--eEEEEE
Q 011579 344 DGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSH--IRLKVH 421 (482)
Q Consensus 344 ~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth--~~l~L~ 421 (482)
+++||+.+|... .++|.|+||||.++.||++ ++|+.||+.||.|+++... ....+..+.+...+ .++..+
T Consensus 55 ~~~VLLv~R~~~-p~~g~W~lPGG~ve~gEs~---~~AA~REl~EEtGl~v~~~----~l~~l~~~~~~~r~~~~~~~~~ 126 (273)
T 2fml_A 55 QLKVLLIQRKGH-PFRNSWALPGGFVNRNEST---EDSVLRETKEETGVVISQE----NIEQLHSFSRPDRDPRGWVVTV 126 (273)
T ss_dssp EEEEEEEEECSS-SSTTCEECCEEECCTTSCH---HHHHHHHHHHHHCCCCCGG----GEEEEEEECCTTSSTTSSEEEE
T ss_pred CcEEEEEEccCC-CCCCcEECCccCCCCCcCH---HHHHHHHHHHHHCCCCCcC----cEEEEEEEcCCCCCCCceEEEE
Confidence 459999999765 5789999999999999887 8999999999999876410 11223322221111 123445
Q ss_pred EEEEEEEEeCCcccccccccCCCCeeeeeccCC
Q 011579 422 VELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGT 454 (482)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~e 454 (482)
+|.+. +.++. .....+..+++|++.++
T Consensus 127 ~y~a~--~~~~~----~~~~~E~~~~~W~~~~e 153 (273)
T 2fml_A 127 SYLAF--IGEEP----LIAGDDAKEVHWFNLER 153 (273)
T ss_dssp EEEEE--CCCCC----CCCCTTEEEEEEEEEEE
T ss_pred EEEEE--eCCCC----CCCCcceeeEEEEEhhH
Confidence 66663 33322 12235667899999986
No 89
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=98.74 E-value=6.7e-09 Score=99.41 Aligned_cols=90 Identities=6% Similarity=-0.159 Sum_probs=56.1
Q ss_pred CcccccCccccCC-CCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcCceEEEEEEEEEEEEEeCCcc---
Q 011579 359 AGLWEFPSIILDG-ETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGID--- 434 (482)
Q Consensus 359 aGLWEFPggkve~-~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~fth~~l~L~~~~~~~~~~~~~~--- 434 (482)
+++||||+|++|+ ||++ ++|+.||+.||.|+.+.. .....++.+.+......-.+++|.+.+ .+...
T Consensus 94 ~~~welPgG~ve~~gEs~---~eaA~REl~EEtGl~~~~----~~l~~l~~~~~~~g~~~~~~~~f~a~~--~~~~~~~~ 164 (218)
T 3q91_A 94 GVTVELCAGLVDQPGLSL---EEVACKEAWEECGYHLAP----SDLRRVATYWSGVGLTGSRQTMFYTEV--TDAQRSGP 164 (218)
T ss_dssp CEEEECEEEECCSSSCCH---HHHHHHHHHHHHCBCCCG----GGCEEEEEEEEC---CCEEEEEEEEEE--CGGGBCC-
T ss_pred CeEEECCcceeCCCCCCH---HHHHHHHHHHHhCCcccc----CceEEEEEEecCCCccceEEEEEEEEE--CCcccccC
Confidence 7999999999998 9888 899999999999998720 023455554432222233456677643 22110
Q ss_pred cccccccCCCCeeeeeccCCccc
Q 011579 435 KWVEKQDKGTLSWKCVDGGTLAS 457 (482)
Q Consensus 435 ~~~~~~~~e~~~~~Wv~~~eL~~ 457 (482)
........|..++.|++.+++.+
T Consensus 165 ~~~~~d~~E~~ev~wv~l~el~~ 187 (218)
T 3q91_A 165 GGGLVEEGELIEVVHLPLEGAQA 187 (218)
T ss_dssp --------CCEEEEEEEGGGHHH
T ss_pred CCCCCCCCcEEEEEEEEHHHHHH
Confidence 00112345788899999998865
No 90
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=98.49 E-value=3e-07 Score=88.79 Aligned_cols=124 Identities=10% Similarity=-0.006 Sum_probs=83.4
Q ss_pred CeEEEEecCCC-CCCCcccccCccccCCCCCh-----------------hhHHHHHHHHHHhhcCCCCCCCcc---cc--
Q 011579 345 GVFILVKRRDE-GLLAGLWEFPSIILDGETDI-----------------TTRREAAECFLKKSFNLDPRNNCS---II-- 401 (482)
Q Consensus 345 gkvLl~KRp~~-gllaGLWEFPggkve~~e~~-----------------~~~~~AL~rel~Eelgi~~~~~~~---~~-- 401 (482)
.+||+.||..+ .+++|.|.||||+++.+++. .....|..||+.||.|+.+..... +.
T Consensus 24 ~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~Gl~l~~~~~~~~~~~~ 103 (232)
T 3qsj_A 24 IEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWLLAVRDGEGTKMDT 103 (232)
T ss_dssp EEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHSCCCSEECTTCCBCCS
T ss_pred eEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHhCceeccccccCcccCh
Confidence 38999999876 46799999999999976532 013689999999999997642110 00
Q ss_pred ----------------------------cccccccEEEEcC----ceEEEEEEEEEEEEEeCCcccccccccCCCCeeee
Q 011579 402 ----------------------------LREDVGEFVHIFS----HIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKC 449 (482)
Q Consensus 402 ----------------------------~~~~l~~v~H~ft----h~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~W 449 (482)
....|..+.|-.| ..+.+-++|.+.+ .. ... ......|+.+..|
T Consensus 104 ~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~arWiTP~~~~rRfdT~FFla~l--pq-~~~-v~~d~~E~~~~~W 179 (232)
T 3qsj_A 104 PLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRFFLCVG--QH-LGE-PRLHGAELDAALW 179 (232)
T ss_dssp CCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEEEEECCTTSSSEEEEEEEEEEC--SS-CCC-CCCCSSSEEEEEE
T ss_pred hhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeEEEcCCcCCceeEEEEEEEEEC--CC-CCC-CCCCCCceEEEEE
Confidence 0112223333222 3457777887743 32 110 0224478889999
Q ss_pred eccCCc------ccCCCChHhHHHHhccC
Q 011579 450 VDGGTL------ASMGLTSGVRKVMMGKS 472 (482)
Q Consensus 450 v~~~eL------~~~~fp~a~~kil~~L~ 472 (482)
+++++. ..+.++++...+|..|.
T Consensus 180 ~~p~eal~~~~~G~i~L~pPT~~~L~~L~ 208 (232)
T 3qsj_A 180 TPARDMLTRIQSGELPAVRPTIAVLKALV 208 (232)
T ss_dssp EEHHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred EcHHHHHHHHHcCCceechhHHHHHHHHH
Confidence 999988 68999999999998873
No 91
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=98.49 E-value=3e-07 Score=91.67 Aligned_cols=116 Identities=14% Similarity=0.100 Sum_probs=70.2
Q ss_pred eEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCc--cc---cccccccc--EEEEcC----
Q 011579 346 VFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNC--SI---ILREDVGE--FVHIFS---- 414 (482)
Q Consensus 346 kvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~--~~---~~~~~l~~--v~H~ft---- 414 (482)
+||+.||... |.|+||||.++.||+. ++|+.||+.||.|+.+.... .. .....+.. -.+.|+
T Consensus 140 ~vLl~~r~~~----g~W~lPGG~Ve~GEs~---~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~ 212 (292)
T 1q33_A 140 QFVAIKRKDC----GEWAIPGGMVDPGEKI---SATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVD 212 (292)
T ss_dssp EEEEEECTTT----CSEECCCEECCTTCCH---HHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECC
T ss_pred EEEEEEecCC----CcEeCCCcccCCCCCH---HHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeeccccc
Confidence 7999999764 7899999999999887 89999999999998731000 00 00122222 112121
Q ss_pred c------eEEEEEEEEEEEEEeCCcc-cccccccCCCCeeeeeccCCcccCCCChHhHHHHhcc
Q 011579 415 H------IRLKVHVELLVLCIKGGID-KWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGK 471 (482)
Q Consensus 415 h------~~l~L~~~~~~~~~~~~~~-~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L 471 (482)
+ ..+...+|.+.. ..+... ......+.+..+++|++.+++.. +...++.||+.+
T Consensus 213 dpr~~d~~~~~~~~f~~~~-~~g~~~~~~~~~~~~E~~~~~W~~~del~~--L~~~h~~il~~~ 273 (292)
T 1q33_A 213 DPRNTDNAWMETEAVNYHD-ETGEIMDNLMLEAGDDAGKVKWVDINDKLK--LYASHSQFIKLV 273 (292)
T ss_dssp CTTCCSSEEEEEEEEEEEE-SSSTTTTTCCCCCCTTCSEEEEEECCTTCC--CSTTHHHHHHHH
T ss_pred CCCCCcccEEEEEEEEEEe-CCCccccccccCCCCccceEEEEEcccCcc--cCHhHHHHHHHH
Confidence 1 133334444421 112110 00012235778899999999986 567788877765
No 92
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Probab=98.30 E-value=2.7e-07 Score=88.11 Aligned_cols=98 Identities=15% Similarity=0.035 Sum_probs=58.9
Q ss_pred CeEEEEecCCCCCCCcccccCccccCCCC-ChhhHHHHHHHHHHhhcCCCCCCCcccccccccccE-EEEcCceEEEEEE
Q 011579 345 GVFILVKRRDEGLLAGLWEFPSIILDGET-DITTRREAAECFLKKSFNLDPRNNCSIILREDVGEF-VHIFSHIRLKVHV 422 (482)
Q Consensus 345 gkvLl~KRp~~gllaGLWEFPggkve~~e-~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v-~H~fth~~l~L~~ 422 (482)
+++|+.+|. +|.|+||||++|.|| ++ ++|+.||+.||+|+++... ....+..+ .+.........++
T Consensus 65 ~~~ll~~r~-----~g~w~lPGG~ve~gE~t~---~eaa~REl~EEtGl~~~~~----~l~~l~~~~~~~~~~~~~~~~~ 132 (217)
T 2xsq_A 65 YAILMQMRF-----DGRLGFPGGFVDTQDRSL---EDGLNRELREELGEAAAAF----RVERTDYRSSHVGSGPRVVAHF 132 (217)
T ss_dssp EEEEEEEET-----TSCEECSEEECCTTCSSH---HHHHHHHHHHHHCGGGGGC----CCCGGGEEEEEECSSSSEEEEE
T ss_pred CcEEEEEcc-----CCeEECCceecCCCCCCH---HHHHHHHHHHHHCCCCccc----eeEEEEEEeecCCCCCeEEEEE
Confidence 356776664 689999999999998 77 8999999999999987510 01112211 1222112344456
Q ss_pred EEEEEEEeCCcccc-------cccccCCCCeeeeeccCCcc
Q 011579 423 ELLVLCIKGGIDKW-------VEKQDKGTLSWKCVDGGTLA 456 (482)
Q Consensus 423 ~~~~~~~~~~~~~~-------~~~~~~e~~~~~Wv~~~eL~ 456 (482)
|.+. +.++.... ......|..+..|++.+++.
T Consensus 133 f~~~--l~~~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~ 171 (217)
T 2xsq_A 133 YAKR--LTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLR 171 (217)
T ss_dssp EEEE--CCHHHHHHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred EEEE--eccccceecccccccccccCCceeeEEEEEHHHhh
Confidence 6664 33211100 00112345668899999987
No 93
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=98.18 E-value=3.2e-06 Score=84.53 Aligned_cols=102 Identities=9% Similarity=0.024 Sum_probs=69.1
Q ss_pred eEEEEecCCC-CCCCccc-ccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCcccccccccccEEEEcC--c-e-EEE
Q 011579 346 VFILVKRRDE-GLLAGLW-EFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFS--H-I-RLK 419 (482)
Q Consensus 346 kvLl~KRp~~-gllaGLW-EFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~~~~~~l~~v~H~ft--h-~-~l~ 419 (482)
++||+||... ..|+|+| .+|+|.++.||++ .+|+.||+.||+|+++.... ...+.+.+.+.|. . + .-.
T Consensus 134 ~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~---~eaA~REl~EElGI~~~~~~---~l~~~g~i~y~~~~~~G~~~E~ 207 (300)
T 3dup_A 134 HLWIGRRSPDKSVAPGKLDNMVAGGQPADLSL---RQNLIKECAEEADLPEALAR---QAIPVGAITYCMESPAGIKPDT 207 (300)
T ss_dssp EEEEEEECTTCSSSTTCEEESEEEECCTTSCH---HHHHHHHHHHHHCCCHHHHT---TCEEEEEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCcccCCCCccccccccCCCCCCCH---HHHHHHHHHHHhCCChhhhh---hccccceEEEEEecCCCeEEEE
Confidence 9999999865 5799999 6999999999888 89999999999999864100 1134455554442 1 1 112
Q ss_pred EEEEEEEEEEeCCcccccccccCCCCeeeeeccCCccc
Q 011579 420 VHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLAS 457 (482)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~ 457 (482)
+++|.+ .+..+.. ..+++.|..+++|++.+++..
T Consensus 208 ~~vy~~--~l~~~~~--p~~~~~EV~~~~~v~~~El~~ 241 (300)
T 3dup_A 208 LFLYDL--ALPEDFR--PHNTDGEMADFMLWPAAKVVE 241 (300)
T ss_dssp EEEEEE--ECCTTCC--CCCTTSSEEEEEEEEHHHHHH
T ss_pred EEEEEE--EecCCCc--CCCCchHhheEEEECHHHHHH
Confidence 344544 3333221 134557888999999888744
No 94
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=98.17 E-value=6e-07 Score=84.37 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=35.8
Q ss_pred CeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCC
Q 011579 345 GVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNL 392 (482)
Q Consensus 345 gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi 392 (482)
.+||+.|++.+ .|+||||++++||++ +++|.|||.||+|+
T Consensus 73 phVLLlq~~~~-----~f~LPGGkle~gE~~---~eaL~REL~EELg~ 112 (208)
T 3bho_A 73 PHVLLLQLGTT-----FFKLPGGELNPGEDE---VEGLKRLMTEILGR 112 (208)
T ss_dssp EEEEEEEEETT-----EEECSEEECCTTCCH---HHHHHHHHHHHHCC
T ss_pred cEEEEEEcCCC-----cEECCCcccCCCCCH---HHHHHHHHHHHhCC
Confidence 37999998543 899999999999988 89999999999995
No 95
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=97.79 E-value=2.6e-05 Score=78.72 Aligned_cols=100 Identities=11% Similarity=0.118 Sum_probs=66.4
Q ss_pred cCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhc-CCCCCCCcccccccccccEEEEcCceEEEE
Q 011579 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSF-NLDPRNNCSIILREDVGEFVHIFSHIRLKV 420 (482)
Q Consensus 342 ~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eel-gi~~~~~~~~~~~~~l~~v~H~fth~~l~L 420 (482)
..+|+|||. ++ .| |.+||+.++.++ .++..||..||. |++++ ....++.+.+.. +...++
T Consensus 191 ~~~g~vLL~--~~----~G-W~LPG~~~~~~~-----~~~a~RE~~EEttGl~v~------~~~L~~v~~~~~-~~~~~i 251 (321)
T 3rh7_A 191 EQQGAVFLA--GN----ET-LSLPNCTVEGGD-----PARTLAAYLEQLTGLNVT------IGFLYSVYEDKS-DGRQNI 251 (321)
T ss_dssp ESSSCEEEB--CS----SE-EBCCEEEESSSC-----HHHHHHHHHHHHHSSCEE------EEEEEEEEECTT-TCCEEE
T ss_pred EECCEEEEe--eC----CC-ccCCcccCCCCh-----hHHHHHHHHHHhcCCEEe------eceEEEEEEcCC-CceEEE
Confidence 457899999 32 57 999999775543 346679999998 99986 322332222211 222333
Q ss_pred EEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCC-hHhHHHHhccCC
Q 011579 421 HVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLT-SGVRKVMMGKSP 473 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp-~a~~kil~~L~~ 473 (482)
+|.|+ +.++. ..+++|+++++|+.+.+. +.++.+|+.+..
T Consensus 252 -~f~~~--~~~g~----------~~e~~~f~~~elp~~~~~~~~~~~~L~~y~~ 292 (321)
T 3rh7_A 252 -VYHAL--ASDGA----------PRQGRFLRPAELAAAKFSSSATADIINRFVL 292 (321)
T ss_dssp -EEEEE--ECSSC----------CSSSEEECHHHHTTCEESSHHHHHHHHHHHH
T ss_pred -EEEEE--eCCCC----------eeeeEEECHHHCCCcccCCHHHHHHHHHHHH
Confidence 67775 33321 257899999999999875 888888887744
No 96
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=86.07 E-value=1.6 Score=35.54 Aligned_cols=60 Identities=18% Similarity=0.312 Sum_probs=40.9
Q ss_pred HHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHhh
Q 011579 148 IHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 148 ~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~fa 214 (482)
+-+|..++.++|.. +.++|- ..|+.|++.-. ..|.+ .+.++|.++||||+++|+.+...+
T Consensus 31 ~i~iN~a~~~~L~~-ipGIG~-~~A~~Il~~r~----~~g~f-~s~edL~~v~Gig~k~~~~l~~~g 90 (98)
T 2edu_A 31 LDLLNEGSARDLRS-LQRIGP-KKAQLIVGWRE----LHGPF-SQVEDLERVEGITGKQMESFLKAN 90 (98)
T ss_dssp HHHHHHSCHHHHHH-STTCCH-HHHHHHHHHHH----HHCCC-SSGGGGGGSTTCCHHHHHHHHHHH
T ss_pred CeehhhCCHHHHHH-CCCCCH-HHHHHHHHHHH----hcCCc-CCHHHHHhCCCCCHHHHHHHHHCc
Confidence 45577778877754 566664 25666655422 12455 678889999999999999886543
No 97
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=86.02 E-value=1.4 Score=44.77 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=41.4
Q ss_pred HHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHhh-cCC
Q 011579 158 EVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIA-FKE 217 (482)
Q Consensus 158 el~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~fa-~~~ 217 (482)
++.+++.-.| .. |++...++|..|......+. +.++|.+|||||+.+|+.|.-+. -|.
T Consensus 26 ~ia~~~e~~g-~~~r~~AYr~Aa~~l~~l~~~i~-~~~~l~~lpGIG~~~A~kI~E~l~tG~ 85 (360)
T 2ihm_A 26 TLAEAAGFEA-NEGRLLSFSRAASVLKSLPCPVA-SLSQLHGLPYFGEHSTRVIQELLEHGT 85 (360)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHCSSCCC-SGGGGTTCTTCCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcC-CcHHHHHHHHHHHHHHhCCcccC-CHHHHhcCCCCCHHHHHHHHHHHHcCC
Confidence 4444455556 34 89999999998887543343 45579999999999999998663 444
No 98
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=84.63 E-value=1.5 Score=43.91 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=42.2
Q ss_pred HHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHhh-cCC
Q 011579 157 EEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIA-FKE 217 (482)
Q Consensus 157 eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~fa-~~~ 217 (482)
+++.+++.-.|=.. |++...++|..|......+. +..+|.+|||||+.||+.|.-+. -|.
T Consensus 20 ~~ia~l~e~~~~~~~rv~AYr~Aa~~l~~l~~~i~-~~~~l~~LpGIG~~~A~kI~E~l~tG~ 81 (335)
T 2fmp_A 20 TELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIK-SGAEAKKLPGVGTKIAEKIDEFLATGK 81 (335)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHCSSCCC-CHHHHHTSTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhCCcccc-CHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 34555555444443 88899999998877543443 45679999999999999998663 344
No 99
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=84.45 E-value=1.6 Score=44.62 Aligned_cols=59 Identities=12% Similarity=0.055 Sum_probs=40.6
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHh-hcCC
Q 011579 158 EVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASI-AFKE 217 (482)
Q Consensus 158 el~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~f-a~~~ 217 (482)
++.+++.-.|-..|++...++|..|......+. +.++|.+|||||+.+|+.|.-+ .-|.
T Consensus 45 ~ia~~~e~~g~~~rv~AYr~Aa~~l~~l~~~i~-~~~~l~~lpGIG~~ia~kI~E~l~tG~ 104 (381)
T 1jms_A 45 ILAENDELRENEGSCLAFMRASSVLKSLPFPIT-SMKDTEGIPCLGDKVKSIIEGIIEDGE 104 (381)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCSSCCC-SGGGGTTCSSCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHhCCcccc-CHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 334444445622299999999988876433333 4557999999999999999865 3454
No 100
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=83.68 E-value=2 Score=43.08 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=28.3
Q ss_pred cCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHh
Q 011579 166 LGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 166 lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~f 213 (482)
.|=..|++...++|..|......+ .+.++|.+|||||+.+|+.|.-+
T Consensus 30 ~g~~~r~~AYr~Aa~~l~~l~~~i-~~~~~l~~lpGIG~~~A~kI~E~ 76 (335)
T 2bcq_A 30 QGDKWRALGYAKAINALKSFHKPV-TSYQEACSIPGIGKRMAEKIIEI 76 (335)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCSCC-CCHHHHHTSTTCCHHHHHHHHHH
T ss_pred cCccHhHHHHHHHHHHHHhCCccc-cCHHHHhcCCCccHHHHHHHHHH
Confidence 333336666777776665432222 23456777777777777777654
No 101
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=83.63 E-value=0.57 Score=36.23 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.8
Q ss_pred chhhhhcCCCCcHHHHHHHHHh
Q 011579 192 TVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 192 ~~~~L~~lpGIG~~TA~~il~f 213 (482)
+.++|.++||||+++|..|+.+
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~ 46 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEG 46 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHT
T ss_pred CHHHHHhCCCCCHHHHHHHHHH
Confidence 5678999999999999999975
No 102
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=81.21 E-value=3.6 Score=37.68 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=61.6
Q ss_pred ChHHHHHHHHHhhhccHHHHHHHHHHHHHhC--CCHHHHHhCCHHHHHHHHhccCcHH---HHHHHHHHHHHHHH
Q 011579 115 RAYGVWVSEVMLQQTRVQTVIDYYNRWMTKW--PTIHHLAKASLEEVNEMWAGLGYYR---RARFLLEGAKMIVA 184 (482)
Q Consensus 115 dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~--pt~~~La~a~~eel~~~i~~lG~~~---RA~~L~~~a~~i~~ 184 (482)
--||.|+=+++-.=.++.++..-.+.|.+.| .+|+.+|..++++|+.++..-|.-+ |.+.+++-|+.+.+
T Consensus 30 ~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF~~Fd~~~VA~~~e~~ve~Ll~d~~IIRnr~KI~A~i~NA~~~l~ 104 (183)
T 2ofk_A 30 KLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLA 104 (183)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHTHHHHHHHTGGGCHHHHHTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHcCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHH
Confidence 4689999999988889999999999998888 4999999999999999999888844 78888888888776
No 103
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=80.95 E-value=0.85 Score=42.75 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=22.1
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhhcCCe
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIAFKEV 218 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa~~~p 218 (482)
+..++|.+|||||+|||.=+..+-+.++
T Consensus 23 ~LI~~l~~LPGIG~KsA~RlA~hLL~~~ 50 (212)
T 3vdp_A 23 KLIEELSKLPGIGPKTAQRLAFFIINMP 50 (212)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHcCC
Confidence 3457789999999999988777666554
No 104
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=80.84 E-value=0.88 Score=42.33 Aligned_cols=47 Identities=23% Similarity=0.318 Sum_probs=33.1
Q ss_pred CCCCCchhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhhccc
Q 011579 187 DGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAIS 237 (482)
Q Consensus 187 g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~~~ 237 (482)
+.+-.+.++|..|||||+++|..|+.+--.-|+ ..+.-+..|+.++.
T Consensus 125 ~pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F----~s~eDL~~RV~GIg 171 (205)
T 2i5h_A 125 DSITTRMHQLELLPGVGKKMMWAIIEERKKRPF----ESFEDIAQRVKGIQ 171 (205)
T ss_dssp CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCC----CSHHHHHHHSTTCC
T ss_pred CCccCCHHHHhcCCCcCHHHHHHHHHHHhcCCC----CCHHHHHHhcCCCC
Confidence 456678899999999999999999977432232 23444556676653
No 105
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=79.24 E-value=4.9 Score=30.03 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=31.0
Q ss_pred HHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHH
Q 011579 138 YNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGA 179 (482)
Q Consensus 138 ~~~l~~~~pt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a 179 (482)
..+|+..|.|.+.|.+|+.+||.++ +|-..+|+.|++..
T Consensus 17 ~~~LL~~Fgs~~~i~~As~eeL~~v---ig~~~~A~~I~~~l 55 (63)
T 2a1j_A 17 CRSLMHHVKNIAELAALSQDELTSI---LGNAANAKQLYDFI 55 (63)
T ss_dssp HHHHHHHCSSHHHHHTCCHHHHHHH---HSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHCCHHHHHHH---cCchHHHHHHHHHH
Confidence 4578899999999999999999887 56332488887644
No 106
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=78.88 E-value=4.1 Score=37.40 Aligned_cols=70 Identities=6% Similarity=0.067 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHhhhccHHHHHHHHHHHHHhC--CCHHHHHhCCHHHHHHHHhccCcHH---HHHHHHHHHHHHHH
Q 011579 115 RAYGVWVSEVMLQQTRVQTVIDYYNRWMTKW--PTIHHLAKASLEEVNEMWAGLGYYR---RARFLLEGAKMIVA 184 (482)
Q Consensus 115 dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~--pt~~~La~a~~eel~~~i~~lG~~~---RA~~L~~~a~~i~~ 184 (482)
--||.|+=+.+-.=.++.++..-.+.|.+.| .+|+.+|..++++|+.++..-|.-+ |.+.++.-|+.+.+
T Consensus 30 ~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~Ll~d~gIIRnr~KI~A~i~NA~~~l~ 104 (186)
T 2jg6_A 30 ALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLK 104 (186)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHH
Confidence 4689999998888889999999999999888 4999999999999999999888854 77788888888775
No 107
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=78.85 E-value=1.1 Score=38.99 Aligned_cols=22 Identities=14% Similarity=0.147 Sum_probs=19.9
Q ss_pred CchhhhhcCCCCcHHHHHHHHH
Q 011579 191 NTVSDLRKVPGIGNYTAGAIAS 212 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~ 212 (482)
.+.++|.+|||||+..|+.|..
T Consensus 60 A~~~eL~~LpGiGp~~A~~II~ 81 (134)
T 1s5l_U 60 TNIAAFIQYRGLYPTLAKLIVK 81 (134)
T ss_dssp SCGGGGGGSTTCTHHHHHHHHH
T ss_pred cCHHHHHHCCCCCHHHHHHHHH
Confidence 4678999999999999999994
No 108
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=78.73 E-value=1.1 Score=34.14 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=18.6
Q ss_pred CchhhhhcCCCCcHHHHHHHHHh
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~f 213 (482)
.+.++|.++||||+++|..|..+
T Consensus 43 a~~~~L~~i~Gig~~~a~~i~~~ 65 (75)
T 1x2i_A 43 ASVAELMKVEGIGEKIAKEIRRV 65 (75)
T ss_dssp CCHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCHHHHhcCCCCCHHHHHHHHHH
Confidence 35778899999999999888764
No 109
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=78.54 E-value=1.1 Score=37.00 Aligned_cols=22 Identities=14% Similarity=0.147 Sum_probs=20.3
Q ss_pred CchhhhhcCCCCcHHHHHHHHH
Q 011579 191 NTVSDLRKVPGIGNYTAGAIAS 212 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~ 212 (482)
.+.++|.+|||||+.+|..|..
T Consensus 23 As~~eL~~lpGIG~~~A~~IV~ 44 (97)
T 3arc_U 23 TNIAAFIQYRGLYPTLAKLIVK 44 (97)
T ss_dssp SCGGGGGGSTTCTTHHHHHHHH
T ss_pred CCHHHHhHCCCCCHHHHHHHHH
Confidence 4678999999999999999998
No 110
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=78.44 E-value=1.1 Score=42.31 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=21.8
Q ss_pred chhhhhcCCCCcHHHHHHHHHhhcCCe
Q 011579 192 TVSDLRKVPGIGNYTAGAIASIAFKEV 218 (482)
Q Consensus 192 ~~~~L~~lpGIG~~TA~~il~fa~~~p 218 (482)
.++.|.+|||||+|||.=+..+-+.++
T Consensus 10 LI~~l~~LPGIG~KSA~RlA~hLL~~~ 36 (228)
T 1vdd_A 10 LIRELSRLPGIGPKSAQRLAFHLFEQP 36 (228)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHSSSC
T ss_pred HHHHHhHCCCCCHHHHHHHHHHHHcCC
Confidence 467889999999999988777666553
No 111
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=77.27 E-value=1.5 Score=35.02 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=18.9
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhh
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa 214 (482)
.+.++|.++||||+++|..+..+-
T Consensus 48 a~~~eL~~i~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 48 ASREDLALCPGLGPQKARRLFDVL 71 (89)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHH
Confidence 356788889999999988887653
No 112
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=76.80 E-value=1.4 Score=41.50 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=22.1
Q ss_pred CCchhhhhcCCCCcHHHHHHHHHhhcCC
Q 011579 190 PNTVSDLRKVPGIGNYTAGAIASIAFKE 217 (482)
Q Consensus 190 p~~~~~L~~lpGIG~~TA~~il~fa~~~ 217 (482)
.++.+.|.++||||+|||+-|..---++
T Consensus 119 ~~d~~~L~~vpGIG~KtA~rIi~elk~k 146 (212)
T 2ztd_A 119 DGNVAALTRVPGIGKRGAERMVLELRDK 146 (212)
T ss_dssp TTCHHHHHTSTTCCHHHHHHHHHHHTTT
T ss_pred hCCHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999886544333
No 113
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=75.54 E-value=1.1 Score=34.74 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=13.5
Q ss_pred chhhhhcCCCCcHHHHHHHHH
Q 011579 192 TVSDLRKVPGIGNYTAGAIAS 212 (482)
Q Consensus 192 ~~~~L~~lpGIG~~TA~~il~ 212 (482)
+.++|.++||||+++|..|..
T Consensus 54 ~~eeL~~i~GIG~~~a~~I~~ 74 (78)
T 1kft_A 54 SVEEIAKVPGISQGLAEKIFW 74 (78)
T ss_dssp CHHHHTTSSSTTSHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHH
Confidence 456666677777766666654
No 114
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=73.86 E-value=6.5 Score=31.29 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHH
Q 011579 137 YYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGA 179 (482)
Q Consensus 137 ~~~~l~~~~pt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a 179 (482)
...+|+..|.+++.|.+|+.+||.++ +|-..+|+.|++..
T Consensus 30 r~~~LL~~FgSl~~i~~AS~eEL~~v---ig~~~~A~~I~~~l 69 (84)
T 1z00_B 30 NCRSLMHHVKNIAELAALSQDELTSI---LGNAANAKQLYDFI 69 (84)
T ss_dssp HHHHHHHHSSCHHHHHHSCHHHHHHH---HSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHCCHHHHHHH---hCchHHHHHHHHHH
Confidence 34578899999999999999999887 56433588887755
No 115
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=73.53 E-value=3.8 Score=31.43 Aligned_cols=55 Identities=38% Similarity=0.402 Sum_probs=36.9
Q ss_pred HHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHh
Q 011579 148 IHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 148 ~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~f 213 (482)
+-++..++.++|.. +.|+|- .+|+.|++. . --.+.++|.+++|||+++++.+.-|
T Consensus 18 ~idiN~a~~~~L~~-ipGIG~-~~A~~Il~~-------r--~~~s~~eL~~v~Gig~k~~~~i~~~ 72 (75)
T 2duy_A 18 PVSLNEASLEELMA-LPGIGP-VLARRIVEG-------R--PYARVEDLLKVKGIGPATLERLRPY 72 (75)
T ss_dssp SEETTTCCHHHHTT-STTCCH-HHHHHHHHT-------C--CCSSGGGGGGSTTCCHHHHHHHGGG
T ss_pred ccChhhCCHHHHHh-CCCCCH-HHHHHHHHH-------c--ccCCHHHHHhCCCCCHHHHHHHHHh
Confidence 34466677777654 355553 255555542 1 1267899999999999999988643
No 116
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=72.61 E-value=1.8 Score=32.51 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=17.3
Q ss_pred hhhhhcCCCCcHHHHHHHHH
Q 011579 193 VSDLRKVPGIGNYTAGAIAS 212 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~ 212 (482)
.+.|.+|||||++++..+|.
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~ 22 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMH 22 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHH
T ss_pred HhHHHcCCCCCHHHHHHHHH
Confidence 45788999999999998885
No 117
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=72.57 E-value=2 Score=34.44 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=19.8
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhh
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa 214 (482)
.+.++|.+++|||+++|..|..+-
T Consensus 61 as~~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 61 ASREDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp CCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHH
Confidence 467889999999999999887653
No 118
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=72.37 E-value=8.8 Score=37.11 Aligned_cols=64 Identities=23% Similarity=0.383 Sum_probs=43.4
Q ss_pred HHHHHhCCCHHHHHhCCHHHHHHHHhccCcHH---HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHhhc
Q 011579 139 NRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR---RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIAF 215 (482)
Q Consensus 139 ~~l~~~~pt~~~La~a~~eel~~~i~~lG~~~---RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~fa~ 215 (482)
..+++.|-+...+...+.++++.+...-.++. ||..=+. ..+|.+-.|||++||+-+| .+|
T Consensus 368 deliehfesiagilatdleeiermyeegrlseeayraaveiq---------------laeltkkegvgrktaerll-raf 431 (519)
T 2csb_A 368 DELIEHFESIAGILATDLEEIERMYEEGRLSEEAYRAAVEIQ---------------LAELTKKEGVGRKTAERLL-RAF 431 (519)
T ss_dssp HHHHHHHSSHHHHHTSCHHHHHHHHHHTSSCHHHHHHHHHHH---------------HHHHHTSTTCCHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHcccccHHHHHHHHHHH---------------HHHHhhhcccchhHHHHHH-HHh
Confidence 34566777888888888888877765555543 3332222 2456777899999998754 577
Q ss_pred CCe
Q 011579 216 KEV 218 (482)
Q Consensus 216 ~~p 218 (482)
|-|
T Consensus 432 gnp 434 (519)
T 2csb_A 432 GNP 434 (519)
T ss_dssp SSH
T ss_pred CCH
Confidence 766
No 119
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=69.53 E-value=2.3 Score=34.65 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.9
Q ss_pred chhhhhcCCCCcHHHHHHHHHh
Q 011579 192 TVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 192 ~~~~L~~lpGIG~~TA~~il~f 213 (482)
+.++|.+|||||+.+|..|+.+
T Consensus 38 ~~~~L~~ipGIG~~~A~~Il~~ 59 (98)
T 2edu_A 38 SARDLRSLQRIGPKKAQLIVGW 59 (98)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHH
Confidence 5678999999999999999976
No 120
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=68.31 E-value=6.7 Score=31.45 Aligned_cols=41 Identities=2% Similarity=0.004 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHH
Q 011579 171 RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIAS 212 (482)
Q Consensus 171 RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~ 212 (482)
++....+++..+......+ .+.+++..|+|||+++|+.|--
T Consensus 36 ~~~~Y~KA~~sLk~~P~~i-~s~~e~~~L~giG~ki~~~L~e 76 (87)
T 2kp7_A 36 TRFVFQKALRSLQRYPLPL-RSGKEAKILQHFGDRLCRMLDE 76 (87)
T ss_dssp THHHHHHHHHHHHHCCSCC-CSHHHHHTCTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCC-CCHHHHHHhhcccHHHHHHHHH
Confidence 4556666666666532211 4678999999999999998753
No 121
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=67.30 E-value=2.8 Score=38.62 Aligned_cols=28 Identities=21% Similarity=0.144 Sum_probs=22.3
Q ss_pred CCchhhhhcCCCCcHHHHHHHHHhhcCC
Q 011579 190 PNTVSDLRKVPGIGNYTAGAIASIAFKE 217 (482)
Q Consensus 190 p~~~~~L~~lpGIG~~TA~~il~fa~~~ 217 (482)
..+.++|.++||||++||+-|...--++
T Consensus 103 ~~d~~~L~~vpGIG~K~A~rI~~~lk~k 130 (191)
T 1ixr_A 103 EGDARLLTSASGVGRRLAERIALELKGK 130 (191)
T ss_dssp TTCHHHHTTSTTCCHHHHHHHHHHHTTT
T ss_pred hCCHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999987544333
No 122
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=66.23 E-value=3 Score=38.82 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=20.6
Q ss_pred CCchhhhhcCCCCcHHHHHHHHHh
Q 011579 190 PNTVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 190 p~~~~~L~~lpGIG~~TA~~il~f 213 (482)
..+.++|.++||||++||+-|...
T Consensus 104 ~~d~~~L~~vpGIG~K~A~rI~~e 127 (203)
T 1cuk_A 104 REEVGALVKLPGIGKKTAERLIVE 127 (203)
T ss_dssp TTCHHHHHTSTTCCHHHHHHHHHH
T ss_pred hCCHHHHhhCCCCCHHHHHHHHHH
Confidence 357899999999999999988654
No 123
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=65.15 E-value=3.5 Score=32.92 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=18.3
Q ss_pred chhhhhcCCCCcHHHHHHHHHh
Q 011579 192 TVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 192 ~~~~L~~lpGIG~~TA~~il~f 213 (482)
....|..|||||++.+..+|..
T Consensus 16 ~~s~L~~IpGIG~kr~~~LL~~ 37 (84)
T 1z00_B 16 PQDFLLKMPGVNAKNCRSLMHH 37 (84)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHH
Confidence 3567899999999999888853
No 124
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=64.73 E-value=1.1 Score=48.43 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=27.2
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhh
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLK 234 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~ 234 (482)
.+.++|.+++|||+.+|+.|..|- -|-+.+.++.+|.
T Consensus 541 a~~e~l~~i~giG~~~A~si~~ff-------~~~~n~~~i~~L~ 577 (586)
T 4glx_A 541 ASIEELQKVPDVGIVVASHVHNFF-------AEESNRNVISELL 577 (586)
T ss_dssp CCHHHHTTSTTCCHHHHHHHHHHH-------HSHHHHHHHHHHH
T ss_pred cCHHHHhcCCCccHHHHHHHHHHH-------cCHHHHHHHHHHH
Confidence 357889999999999999998763 2334556666654
No 125
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=63.45 E-value=6.7 Score=34.07 Aligned_cols=50 Identities=16% Similarity=0.384 Sum_probs=36.2
Q ss_pred HHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHH
Q 011579 150 HLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIA 211 (482)
Q Consensus 150 ~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il 211 (482)
+|-.|+.+++.. --|.+. +|+.|+ + +|.| .+.++|.+++|||+++.+.+-
T Consensus 56 niNtA~~~eL~~---LpGiGp~~A~~II-------~-~GpF-~svedL~~V~GIg~k~~e~l~ 106 (134)
T 1s5l_U 56 DLNNTNIAAFIQ---YRGLYPTLAKLIV-------K-NAPY-ESVEDVLNIPGLTERQKQILR 106 (134)
T ss_dssp ETTTSCGGGGGG---STTCTHHHHHHHH-------H-TCCC-SSGGGGGGCTTCCHHHHHHHH
T ss_pred eCcccCHHHHHH---CCCCCHHHHHHHH-------H-cCCC-CCHHHHHhCCCCCHHHHHHHH
Confidence 356677777753 236666 888877 2 4544 578999999999999877664
No 126
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=62.09 E-value=3.6 Score=38.57 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=26.5
Q ss_pred hhhhhcCCCCcHHHHHHHHHhhcCCeee---eecCchhhhH
Q 011579 193 VSDLRKVPGIGNYTAGAIASIAFKEVVP---VVDGNVIRVL 230 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~fa~~~p~~---~vD~~v~Rvl 230 (482)
...|.+++||||++|-.|+. .|+...+ +++.++.++.
T Consensus 87 f~~L~sv~GIGpk~A~~Ils-~~~~~~l~~aI~~~d~~~L~ 126 (212)
T 2ztd_A 87 FLTLLSVSGVGPRLAMAALA-VHDAPALRQVLADGNVAALT 126 (212)
T ss_dssp HHHHHTSTTCCHHHHHHHHH-HSCHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCcCCcCHHHHHHHHH-hCCHHHHHHHHHhCCHHHHh
Confidence 35688999999999999997 4554322 5666666553
No 127
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=61.68 E-value=3.9 Score=37.69 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=19.0
Q ss_pred hhhhcCCCCcHHHHHHHHHhhcCC
Q 011579 194 SDLRKVPGIGNYTAGAIASIAFKE 217 (482)
Q Consensus 194 ~~L~~lpGIG~~TA~~il~fa~~~ 217 (482)
..|.+++||||++|..+|.. |+-
T Consensus 72 ~~L~~v~GIGpk~A~~iL~~-f~~ 94 (191)
T 1ixr_A 72 ELLLSVSGVGPKVALALLSA-LPP 94 (191)
T ss_dssp HHHHSSSCCCHHHHHHHHHH-SCH
T ss_pred HHHhcCCCcCHHHHHHHHHh-CCh
Confidence 45889999999999999974 444
No 128
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=59.95 E-value=3.7 Score=41.10 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.6
Q ss_pred CCchhhhhcCCCCcHHHHHHHHHh
Q 011579 190 PNTVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 190 p~~~~~L~~lpGIG~~TA~~il~f 213 (482)
|....+|+++||||++||..+---
T Consensus 94 ~~~l~~l~~V~GiGpk~a~~l~~~ 117 (335)
T 2fmp_A 94 SSSINFLTRVSGIGPSAARKFVDE 117 (335)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred hhHHHHHhCCCCCCHHHHHHHHHc
Confidence 567889999999999999988543
No 129
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=57.56 E-value=2.2 Score=46.31 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=0.0
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhh
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa 214 (482)
.+.++|.+++|||+.+|..|..|-
T Consensus 558 As~eeL~~I~GIG~~~A~sI~~ff 581 (615)
T 3sgi_A 558 ASTDQLAAVEGVGPTIAAAVTEWF 581 (615)
T ss_dssp ------------------------
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHH
Confidence 356788889999999988887653
No 130
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=57.37 E-value=4 Score=31.53 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=19.5
Q ss_pred hhhhhcCCCCcHHHHHHHHHhhcCC
Q 011579 193 VSDLRKVPGIGNYTAGAIASIAFKE 217 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~fa~~~ 217 (482)
...|..+||||+++|..++.. ||-
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~-fgs 46 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKY-MGG 46 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHH-HSC
T ss_pred HHHHhcCCCCCHHHHHHHHHH-cCC
Confidence 456889999999999998865 553
No 131
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=55.58 E-value=6.5 Score=31.08 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=19.1
Q ss_pred hhhhhcCCCCcHHHHHHHHHhhcCC
Q 011579 193 VSDLRKVPGIGNYTAGAIASIAFKE 217 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~fa~~~ 217 (482)
...|..+||||+++|..++.. ||-
T Consensus 18 ~~~L~~IpgIG~~~A~~Ll~~-fgs 41 (89)
T 1z00_A 18 TECLTTVKSVNKTDSQTLLTT-FGS 41 (89)
T ss_dssp HHHHTTSSSCCHHHHHHHHHH-TCB
T ss_pred HHHHHcCCCCCHHHHHHHHHH-CCC
Confidence 456789999999999998864 553
No 132
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=54.91 E-value=5.4 Score=37.06 Aligned_cols=23 Identities=35% Similarity=0.310 Sum_probs=18.8
Q ss_pred hhhhcCCCCcHHHHHHHHHhhcCC
Q 011579 194 SDLRKVPGIGNYTAGAIASIAFKE 217 (482)
Q Consensus 194 ~~L~~lpGIG~~TA~~il~fa~~~ 217 (482)
..|.+++||||++|-.+|.. |+-
T Consensus 73 ~~L~~V~GIGpk~A~~iL~~-f~~ 95 (203)
T 1cuk_A 73 KELIKTNGVGPKLALAILSG-MSA 95 (203)
T ss_dssp HHHHHSSSCCHHHHHHHHHH-SCH
T ss_pred HHHhcCCCcCHHHHHHHHhh-CCh
Confidence 35789999999999999983 443
No 133
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=51.98 E-value=7.5 Score=29.22 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=19.1
Q ss_pred hhhhhcCCCCcHHHHHHHHHhhcCC
Q 011579 193 VSDLRKVPGIGNYTAGAIASIAFKE 217 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~fa~~~ 217 (482)
...|..+||||+.+|..++. .||-
T Consensus 13 ~~~L~~i~giG~~~a~~Ll~-~fgs 36 (75)
T 1x2i_A 13 RLIVEGLPHVSATLARRLLK-HFGS 36 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHH-HHCS
T ss_pred HHHHcCCCCCCHHHHHHHHH-HcCC
Confidence 34688999999999999887 3554
No 134
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=51.95 E-value=7.3 Score=31.01 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=18.8
Q ss_pred hhhhhcCCCCcHHHHHHHHHhhcCC
Q 011579 193 VSDLRKVPGIGNYTAGAIASIAFKE 217 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~fa~~~ 217 (482)
...|..+||||+++|..++.. ||-
T Consensus 31 ~~~L~~IpgIG~~~A~~Ll~~-fgs 54 (91)
T 2a1j_B 31 TECLTTVKSVNKTDSQTLLTT-FGS 54 (91)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH-HSS
T ss_pred HHHHHcCCCCCHHHHHHHHHH-CCC
Confidence 345779999999999988764 553
No 135
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=51.05 E-value=10 Score=35.12 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=18.2
Q ss_pred CchhhhhcCCCCcHHHHHHHHHh
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~f 213 (482)
.+.++|.++||||+++|..+..+
T Consensus 191 a~~e~L~~v~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 191 ASKAEISKVEGIGEKRAEEIKKI 213 (219)
T ss_dssp CCHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCHHHHhhCCCCCHHHHHHHHHH
Confidence 45678888888888888887654
No 136
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=50.69 E-value=12 Score=30.51 Aligned_cols=56 Identities=14% Similarity=0.315 Sum_probs=39.0
Q ss_pred CCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHH
Q 011579 146 PTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIAS 212 (482)
Q Consensus 146 pt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~ 212 (482)
+..-+|-.|+.++|.. +.++|- .+|+.|++ +|.| .++++|.+++|||+++.+-+.-
T Consensus 15 ~~~vdiNtAs~~eL~~-lpGIG~-~~A~~IV~--------~GpF-~s~edL~~V~Gig~~~~e~l~~ 70 (97)
T 3arc_U 15 GEKIDLNNTNIAAFIQ-YRGLYP-TLAKLIVK--------NAPY-ESVEDVLNIPGLTERQKQILRE 70 (97)
T ss_dssp GTSEETTTSCGGGGGG-STTCTT-HHHHHHHH--------HCCC-SSGGGGGGCTTCCHHHHHHHHH
T ss_pred CCceeCCcCCHHHHhH-CCCCCH-HHHHHHHH--------cCCC-CCHHHHHhccCCCHHHHHHHHH
Confidence 3444566788888754 455554 26777766 2433 5789999999999999888764
No 137
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=50.45 E-value=27 Score=36.07 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=39.5
Q ss_pred HHHHHHhhhccHHHH---HHHHHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHH
Q 011579 120 WVSEVMLQQTRVQTV---IDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMI 182 (482)
Q Consensus 120 lVs~Il~Qqt~~~~v---~~~~~~l~~~~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i 182 (482)
-++.|++-+|-+..+ ..++ .+..+|.+..++..++.+++ +.+||+. +...|+.+-+.+
T Consensus 511 qarrI~gl~~l~~~~~d~~~a~-elkr~ygs~savr~~pv~el----relg~sd~~ia~ikgip~~~ 572 (685)
T 4gfj_A 511 QIRELKGLKTLESIVGDLEKAD-ELKRKYGSASAVRRLPVEEL----RELGFSDDEIAEIKGIPKKL 572 (685)
T ss_dssp HHHHHHTCHHHHHHSSSHHHHH-HHHHHSSCHHHHHHSCHHHH----HTTSCCHHHHHHHHTCCHHH
T ss_pred HHHHHhhHHHHHHHhcchhhHH-HHHHhhccHHHHHhccHHHH----HHcCCchhhHHHhcCCcHHH
Confidence 356666666543332 2222 47788999999999999996 7899987 666666544333
No 138
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=50.02 E-value=10 Score=29.04 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=31.9
Q ss_pred HHHH-hCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHH
Q 011579 140 RWMT-KWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKM 181 (482)
Q Consensus 140 ~l~~-~~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~ 181 (482)
+|.+ .+-|.++|+.++.++|.++ .|+.. ||..|+..|+.
T Consensus 22 kL~e~Gi~TvedlA~~~~~eL~~i---~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 22 KLAARGVCTLEDLAEQGIDDLADI---EGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHTTTCCSHHHHHTSCHHHHHTS---SSCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHcCCHHHHHHc---cCCCHHHHHHHHHHHHH
Confidence 4444 4889999999999998653 58887 99999999986
No 139
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=47.70 E-value=15 Score=28.27 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHH
Q 011579 173 RFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAG 208 (482)
Q Consensus 173 ~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~ 208 (482)
..|.++|+ ..|.+.++|.+++|||++-.+
T Consensus 33 ~~L~~iA~-------~~P~t~~eL~~i~Gvg~~k~~ 61 (77)
T 2rhf_A 33 ATLEALAA-------RQPRTLAELAEVPGLGEKRIE 61 (77)
T ss_dssp HHHHHHHH-------HCCCSHHHHTTSTTTCHHHHH
T ss_pred HHHHHHHH-------hCCCCHHHHhhCCCCCHHHHH
Confidence 44555555 369999999999999987654
No 140
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=47.47 E-value=3.6 Score=45.03 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=18.4
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhh
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa 214 (482)
.+.++|.+++|||+.+|+.|..|-
T Consensus 536 As~eeL~~I~GIG~~~A~sI~~ff 559 (667)
T 1dgs_A 536 ASLEELIEVEEVGELTARAILETL 559 (667)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHHhccCcCHHHHHHHHHHH
Confidence 456778888888888888887653
No 141
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=46.22 E-value=4.2 Score=44.59 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=17.8
Q ss_pred CchhhhhcCCCCcHHHHHHHHHhh
Q 011579 191 NTVSDLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~fa 214 (482)
.+.++|.+++|||+.+|..|..|-
T Consensus 541 As~eeL~~i~GIG~~~A~sI~~ff 564 (671)
T 2owo_A 541 ASIEELQKVPDVGIVVASHVHNFF 564 (671)
T ss_dssp CCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHhhcCCCCHHHHHHHHHHH
Confidence 356778888888888888887653
No 142
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=45.20 E-value=4.5 Score=38.68 Aligned_cols=25 Identities=20% Similarity=0.504 Sum_probs=0.0
Q ss_pred hhhhhcCCCCcHHHHHHHHHhhcCC
Q 011579 193 VSDLRKVPGIGNYTAGAIASIAFKE 217 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~fa~~~ 217 (482)
...|.+|||||+++|..++..+|+.
T Consensus 14 ~~~L~~IpGIGpk~a~~Ll~~gf~s 38 (241)
T 1vq8_Y 14 YTELTDISGVGPSKAESLREAGFES 38 (241)
T ss_dssp -------------------------
T ss_pred hhHHhcCCCCCHHHHHHHHHcCCCC
Confidence 3467777777777777777654543
No 143
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=45.08 E-value=13 Score=37.04 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=15.3
Q ss_pred hhhcCCCCcHHHHHHHHHh
Q 011579 195 DLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 195 ~L~~lpGIG~~TA~~il~f 213 (482)
.|.++||||++||..+-.-
T Consensus 97 ll~~v~GiG~k~a~~l~~~ 115 (335)
T 2bcq_A 97 LFSNIWGAGTKTAQMWYQQ 115 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHT
T ss_pred HHhcCCCcCHHHHHHHHHc
Confidence 3469999999999987543
No 144
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=43.31 E-value=9.4 Score=40.95 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=23.7
Q ss_pred CCCchhhhhcCCCCcHHHHHHHHHhhcC
Q 011579 189 FPNTVSDLRKVPGIGNYTAGAIASIAFK 216 (482)
Q Consensus 189 ~p~~~~~L~~lpGIG~~TA~~il~fa~~ 216 (482)
.++...+|++++|||+++|..++.-++.
T Consensus 92 ~~~~~~~L~~v~GVGpk~A~~i~~~G~~ 119 (578)
T 2w9m_A 92 LPPGLLDLLGVRGLGPKKIRSLWLAGID 119 (578)
T ss_dssp SCHHHHHHTTSTTCCHHHHHHHHHTTCC
T ss_pred hHHHHHHHhCCCCcCHHHHHHHHHcCCC
Confidence 4678889999999999999999976443
No 145
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=42.72 E-value=18 Score=36.78 Aligned_cols=45 Identities=24% Similarity=0.414 Sum_probs=30.6
Q ss_pred HHHHHHhCCCHHHHHhCCHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Q 011579 138 YNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVA 184 (482)
Q Consensus 138 ~~~l~~~~pt~~~La~a~~eel~~~i~~lG~~~RA~~L~~~a~~i~~ 184 (482)
.+++.+.|.|++.+.+|+.+||.+. .|+|= .||+.|++....+..
T Consensus 328 ae~Lv~~FGsLq~Il~AS~eEL~~V-eGIGe-~rAr~IregL~r~~~ 372 (377)
T 3c1y_A 328 GYNVVRMFKTLDQISKASVEDLKKV-EGIGE-KRARAISESISSLKH 372 (377)
T ss_dssp HHHHHHHHCSHHHHTTCCHHHHTTS-TTCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHhCCHHHHHhc-cCccH-HHHHHHHHHHHHHhc
Confidence 4567778888888888888887443 44442 277777777766553
No 146
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=41.90 E-value=17 Score=28.52 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHH
Q 011579 172 ARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAG 208 (482)
Q Consensus 172 A~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~ 208 (482)
-..|.++|+ ..|.+.++|..++|||+.-.+
T Consensus 34 d~tL~~iA~-------~~P~t~~eL~~i~Gvg~~k~~ 63 (85)
T 2kv2_A 34 TVTLKKLAE-------SLSSDPEVLLQIDGVTEDKLE 63 (85)
T ss_dssp HHHHHHHHH-------HCCSCHHHHHTSSSCCHHHHH
T ss_pred HHHHHHHHH-------hCCCCHHHHhhCCCCCHHHHH
Confidence 345666665 369999999999999986443
No 147
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=40.93 E-value=31 Score=33.89 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=33.6
Q ss_pred hccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHH
Q 011579 164 AGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIA 211 (482)
Q Consensus 164 ~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il 211 (482)
...|+.+ |.++.++++.|..+ -.+.+ ..|.+|||||+..+..+-
T Consensus 131 ~~~g~~~-~~~~l~L~q~i~q~--~w~~~-~pL~Qlp~i~~~~~~~l~ 174 (328)
T 3im1_A 131 SANGYLN-ATTAMDLAQMLIQG--VWDVD-NPLRQIPHFNNKILEKCK 174 (328)
T ss_dssp HHTTBTT-HHHHHHHHHHHHHT--SCTTS-CGGGGSTTCCHHHHHHHH
T ss_pred HcCCcHH-HHHHHHHHHHHHhh--cCCCC-CceeCCCCCCHHHHHHHH
Confidence 4567777 99999999999874 23333 579999999999887643
No 148
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=40.48 E-value=21 Score=28.30 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHH
Q 011579 173 RFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAG 208 (482)
Q Consensus 173 ~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~ 208 (482)
..|.++|+ ..|.+.++|..|+|||+.-+.
T Consensus 41 ~tL~eiA~-------~~P~t~~eL~~i~Gvg~~k~~ 69 (89)
T 1wud_A 41 ATLIEMAE-------QMPITASEMLSVNGVGMRKLE 69 (89)
T ss_dssp HHHHHHHH-------HCCCSHHHHHTSTTCCHHHHH
T ss_pred HHHHHHHH-------hCCCCHHHHhhCCCCCHHHHH
Confidence 45556655 369999999999999985443
No 149
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=39.42 E-value=8.5 Score=38.86 Aligned_cols=26 Identities=23% Similarity=0.091 Sum_probs=21.2
Q ss_pred CCCCchhhhhcCCCCcHHHHHHHHHh
Q 011579 188 GFPNTVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 188 ~~p~~~~~L~~lpGIG~~TA~~il~f 213 (482)
..|....+|+++||||++||..+-.-
T Consensus 96 ~~~~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 96 ERYQTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred cchHHHHHHhCCCCCCHHHHHHHHHc
Confidence 45666788999999999999988543
No 150
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=39.20 E-value=16 Score=30.71 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=21.4
Q ss_pred CCCCc---hhhhhcCCCCcHHHHHHHHHhh
Q 011579 188 GFPNT---VSDLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 188 ~~p~~---~~~L~~lpGIG~~TA~~il~fa 214 (482)
++|.. .-.|..|.|||+.+|..|+.-+
T Consensus 7 ~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~ 36 (114)
T 3r8n_M 7 NIPDHKHAVIALTSIYGVGKTRSKAILAAA 36 (114)
T ss_dssp CCCCSSCHHHHGGGSTTCCHHHHHHHHHHT
T ss_pred cCCCCCEeHhhHhhhcCcCHHHHHHHHHHc
Confidence 45543 4578999999999999999754
No 151
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=37.28 E-value=22 Score=29.20 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHH
Q 011579 173 RFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAG 208 (482)
Q Consensus 173 ~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~ 208 (482)
..|.++|+ ..|.+.++|..|+|||+.-+.
T Consensus 43 ~tL~emA~-------~~P~t~~eL~~I~Gvg~~K~~ 71 (103)
T 2e1f_A 43 KILVDMAK-------MRPTTVENVKRIDGVSEGKAA 71 (103)
T ss_dssp HHHHHHHH-------HCCCSHHHHTTSTTCCHHHHH
T ss_pred HHHHHHHH-------hCCCCHHHHhcCCCCCHHHHH
Confidence 45556655 369999999999999986554
No 152
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=37.27 E-value=13 Score=39.82 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.1
Q ss_pred CCCchhhhhcCCCCcHHHHHHHHHh
Q 011579 189 FPNTVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 189 ~p~~~~~L~~lpGIG~~TA~~il~f 213 (482)
.++....|++++||||+||..++..
T Consensus 88 ~~~~~~~l~~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 88 VPRGVLEVMEVPGVGPKTARLLYEG 112 (575)
T ss_dssp SCHHHHHHHTSTTTCHHHHHHHHHT
T ss_pred hHHHHHHHhcCCCcCHHHHHHHHHh
Confidence 4677889999999999999999874
No 153
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=36.97 E-value=31 Score=27.81 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=29.0
Q ss_pred hhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhhc
Q 011579 193 VSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKA 235 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~ 235 (482)
..+|..||+||+.++..+...+...+.=..+..-.....|+..
T Consensus 3 ~~~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL~~ 45 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWE 45 (93)
T ss_dssp CSCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHT
T ss_pred hHHhhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHH
Confidence 4678999999999999988877766533333333444444443
No 154
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=36.44 E-value=22 Score=36.15 Aligned_cols=34 Identities=35% Similarity=0.329 Sum_probs=24.0
Q ss_pred HHHHHHHcCCC----CCCchhhhhcCCCCcHHHHHHHH
Q 011579 178 GAKMIVAEGDG----FPNTVSDLRKVPGIGNYTAGAIA 211 (482)
Q Consensus 178 ~a~~i~~~~g~----~p~~~~~L~~lpGIG~~TA~~il 211 (482)
+|+.++++.|. +..+.++|.++.|||+++|..|.
T Consensus 327 iae~Lv~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~Ir 364 (377)
T 3c1y_A 327 IGYNVVRMFKTLDQISKASVEDLKKVEGIGEKRARAIS 364 (377)
T ss_dssp HHHHHHHHHCSHHHHTTCCHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHhCCHHHHHhccCccHHHHHHHH
Confidence 35666666444 34677888888888888887764
No 155
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=35.61 E-value=20 Score=31.59 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.1
Q ss_pred hhhhhcCCCCcHHHHHHHHHhh
Q 011579 193 VSDLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~fa 214 (482)
.-.|..|.|||+.+|..|+.-+
T Consensus 29 ~~ALt~I~GIG~~~A~~I~~~~ 50 (146)
T 3u5c_S 29 VYALTTIKGVGRRYSNLVCKKA 50 (146)
T ss_dssp TTTGGGSTTCCHHHHHHHHHHH
T ss_pred HhhHhhhcCCCHHHHHHHHHHc
Confidence 4579999999999999998754
No 156
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=34.87 E-value=11 Score=38.34 Aligned_cols=26 Identities=19% Similarity=0.079 Sum_probs=21.4
Q ss_pred CCCCchhhhhcCCCCcHHHHHHHHHh
Q 011579 188 GFPNTVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 188 ~~p~~~~~L~~lpGIG~~TA~~il~f 213 (482)
..|....+|++++|||++||..+-.-
T Consensus 115 ~~~~~l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 115 ERYKSFKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred cchhHHHHHHccCCCCHHHHHHHHHc
Confidence 45667789999999999999988443
No 157
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=33.78 E-value=65 Score=31.74 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=34.3
Q ss_pred hccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHH
Q 011579 164 AGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIA 211 (482)
Q Consensus 164 ~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il 211 (482)
...|+.+-|.++.++++.|..+ - ..+...|.+|||||+.++..+-
T Consensus 134 ~~~g~~~~~~~~l~L~q~i~q~--~-w~~~~pL~Qlp~i~~~~~~~l~ 178 (339)
T 2q0z_X 134 SSNGWLSPALAAMELAQMVTQA--M-WSKDSYLKQLPHFTSEHIKRCT 178 (339)
T ss_dssp HHTTBHHHHHHHHHHHHHHHHT--C-CTTSCGGGGSTTCCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHh--c-CCCCCceecCCCCCHHHHHHHH
Confidence 4567777789999999999884 2 2233579999999998877654
No 158
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=32.71 E-value=28 Score=28.37 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHH
Q 011579 172 ARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAG 208 (482)
Q Consensus 172 A~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~ 208 (482)
=..|.++|+. .|.+.++|..|+|||+.-+.
T Consensus 49 D~tL~eiA~~-------~P~t~~eL~~I~Gvg~~k~~ 78 (101)
T 2rrd_A 49 TVTLKKLAES-------LSSDPEVLLQIDGVTEDKLE 78 (101)
T ss_dssp HHHHHHHHHH-------CCCCHHHHHTSTTCCHHHHH
T ss_pred HHHHHHHHHh-------CCCCHHHHhhCCCCCHHHHH
Confidence 3556666653 69999999999999986544
No 159
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=30.80 E-value=25 Score=31.26 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.1
Q ss_pred hhhhhcCCCCcHHHHHHHHHhh
Q 011579 193 VSDLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~fa 214 (482)
.-.|..|.|||+.+|..|+.-+
T Consensus 29 ~~aLt~I~GIG~~~A~~I~~~~ 50 (155)
T 2xzm_M 29 PIALTGIRGIGRRFAYIICKVL 50 (155)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHT
T ss_pred EEeeecccccCHHHHHHHHHHc
Confidence 4579999999999999998754
No 160
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=30.68 E-value=25 Score=31.10 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=21.6
Q ss_pred CCCCc---hhhhhcCCCCcHHHHHHHHHhh
Q 011579 188 GFPNT---VSDLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 188 ~~p~~---~~~L~~lpGIG~~TA~~il~fa 214 (482)
++|.. .-.|..|.|||+.+|..|+.-+
T Consensus 19 ~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~ 48 (152)
T 3iz6_M 19 NVDGKQKIMFALTSIKGVGRRFSNIVCKKA 48 (152)
T ss_dssp CCCCSSBHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred cCCCCcEeHhhhhhccCcCHHHHHHHHHHc
Confidence 45643 4579999999999999998754
No 161
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.58 E-value=23 Score=31.25 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=19.4
Q ss_pred hhhhhcCCCCcHHHHHHHHHhhc
Q 011579 193 VSDLRKVPGIGNYTAGAIASIAF 215 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~fa~ 215 (482)
.-.|..|.|||+.+|..|+.-+-
T Consensus 22 ~~aLt~I~GIG~~~A~~I~~~~g 44 (148)
T 3j20_O 22 RWALTAIKGIGINFATMVCRVAG 44 (148)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHT
T ss_pred hhhhhhccCcCHHHHHHHHHHhC
Confidence 45789999999999999987653
No 162
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=30.03 E-value=53 Score=35.91 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=42.8
Q ss_pred HHHHhC--CCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhh--hcCCCCcHHHHHHHHHhh
Q 011579 140 RWMTKW--PTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDL--RKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 140 ~l~~~~--pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L--~~lpGIG~~TA~~il~fa 214 (482)
.|++.. -++++|..+..++|..+ =||.. .|.+|++.-+.-.. .| ....| +.|||||+.+|..++..
T Consensus 461 ~L~~~g~I~~~aDL~~L~~~~L~~l---~gfG~Ksa~nLl~aIe~sk~----~~-l~R~L~algi~~VG~~~Ak~La~~- 531 (671)
T 2owo_A 461 QLVEKEYVHTPADLFKLTAGKLTGL---ERMGPKSAQNVVNALEKAKE----TT-FARFLYALGIREVGEATAAGLAAY- 531 (671)
T ss_dssp HHHHTTCCSSGGGGGTCCHHHHHTS---TTCCHHHHHHHHHHHHHHTB----CC-HHHHHHHTTCTTCCHHHHHHHHHH-
T ss_pred HHHHcCCCCCHHHHHhhCHHHhhcc---cccchhHHHHHHHHHHHHhc----CC-hhheehhhcccCccHHHHHHHHHH-
Confidence 344442 48888999987776432 36656 68888765443211 12 12223 37999999999988764
Q ss_pred cC
Q 011579 215 FK 216 (482)
Q Consensus 215 ~~ 216 (482)
||
T Consensus 532 Fg 533 (671)
T 2owo_A 532 FG 533 (671)
T ss_dssp HC
T ss_pred cC
Confidence 54
No 163
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=29.79 E-value=43 Score=27.00 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=22.2
Q ss_pred hhhhhcCCCCcHHHHHHHHHhhcCCe
Q 011579 193 VSDLRKVPGIGNYTAGAIASIAFKEV 218 (482)
Q Consensus 193 ~~~L~~lpGIG~~TA~~il~fa~~~p 218 (482)
..+|..||+||+.++..+...+...+
T Consensus 3 m~~L~dLPNig~~~e~~L~~~GI~t~ 28 (93)
T 3mab_A 3 LANLSELPNIGKVLEQDLIKAGIKTP 28 (93)
T ss_dssp CCCGGGSTTCCHHHHHHHHHTTCCSH
T ss_pred HHHHhhCCCCCHHHHHHHHHcCCCCH
Confidence 46799999999999999888877665
No 164
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=29.67 E-value=1.3e+02 Score=32.45 Aligned_cols=51 Identities=20% Similarity=0.198 Sum_probs=35.2
Q ss_pred hccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHhhcCC
Q 011579 164 AGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIAFKE 217 (482)
Q Consensus 164 ~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~ 217 (482)
..+|...-+..+..+++.|.. .++...-.|.+|||||+..|..+-..++..
T Consensus 630 ~~~~~~~~~~~l~~l~~rl~~---gv~~e~~~L~qlp~i~~~rar~L~~~g~~s 680 (715)
T 2va8_A 630 RELKLNEHADKLRILNLRVRD---GIKEELLELVQISGVGRKRARLLYNNGIKE 680 (715)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH---TCCGGGHHHHTSTTCCHHHHHHHHHTTCCS
T ss_pred HHhCcHHHHHHHHHHHHHHHc---CCChhhcchhhCCCCCHHHHHHHHHcCCCC
Confidence 345554444555566665554 467778889999999999999876655544
No 165
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=28.58 E-value=22 Score=29.74 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHH
Q 011579 172 ARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNY 205 (482)
Q Consensus 172 A~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~ 205 (482)
=..|.++|+ ..|.+.++|..|+|||+.
T Consensus 49 D~tL~emA~-------~~P~t~~eL~~I~Gvg~~ 75 (113)
T 2dgz_A 49 NKILVDMAK-------MRPTTVENVKRIDGVSEG 75 (113)
T ss_dssp HHHHHHHHH-------HCCCSHHHHHHSSSCCTT
T ss_pred HHHHHHHHH-------hCCCCHHHHHhCCCCCHH
Confidence 355666665 369999999999999974
No 166
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=26.33 E-value=58 Score=34.65 Aligned_cols=57 Identities=23% Similarity=0.257 Sum_probs=37.0
Q ss_pred HHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchh----hhhcCCCCcHHHHHHHHHhh
Q 011579 158 EVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVS----DLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 158 el~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~----~L~~lpGIG~~TA~~il~fa 214 (482)
++.+++.-.|=.. |++.-.++|..|......+....+ .|.+|||||..++..|-.+.
T Consensus 12 ~~a~~~e~~g~~~~r~~aYr~Aa~~l~~~~~~i~~~~~~~~~~~~~lp~iG~~~~~~i~~~v 73 (575)
T 3b0x_A 12 EIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVGPDLAEKILEFL 73 (575)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHCCSCHHHHHTTCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHhCCcchhhHhhcchhHHHhCCCCCHHHHHHHHHHH
Confidence 4444444556433 888888999888764322221111 18999999999999886553
No 167
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=24.38 E-value=16 Score=34.81 Aligned_cols=48 Identities=31% Similarity=0.270 Sum_probs=0.0
Q ss_pred HhccCcHHHHHHHHHHHHHHHHcCCCCCCchhhhhcCCCCcHHHHHHHHHh
Q 011579 163 WAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 163 i~~lG~~~RA~~L~~~a~~i~~~~g~~p~~~~~L~~lpGIG~~TA~~il~f 213 (482)
|.|+|= .+|+.|++. -+..-..-.-.+.++|.++||||++||+-|...
T Consensus 20 IpGIGp-k~a~~Ll~~--gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~ 67 (241)
T 1vq8_Y 20 ISGVGP-SKAESLREA--GFESVEDVRGADQSALADVSGIGNALAARIKAD 67 (241)
T ss_dssp ---------------------------------------------------
T ss_pred CCCCCH-HHHHHHHHc--CCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHH
Confidence 344442 267776654 111101112246788999999999999988643
No 168
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=23.67 E-value=42 Score=25.82 Aligned_cols=47 Identities=19% Similarity=0.141 Sum_probs=30.4
Q ss_pred HhccCcHHHHHHHHHHHHHHHHcCCC-CCCchhhhhcCCCCcHHHHHHHH
Q 011579 163 WAGLGYYRRARFLLEGAKMIVAEGDG-FPNTVSDLRKVPGIGNYTAGAIA 211 (482)
Q Consensus 163 i~~lG~~~RA~~L~~~a~~i~~~~g~-~p~~~~~L~~lpGIG~~TA~~il 211 (482)
|..++++.||.+..+-|.. . .-|+ +--+.++|++++|+|+++.+-|.
T Consensus 11 Ie~L~LS~Ra~NcLkragI-~-Tv~dL~~~s~~dLlki~n~G~kSl~EI~ 58 (73)
T 1z3e_B 11 IEELDLSVRSYNCLKRAGI-N-TVQELANKTEEDMMKVRNLGRKSLEEVK 58 (73)
T ss_dssp GGGSCCBHHHHHHHHHTTC-C-BHHHHHTSCHHHHHTSTTCCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHcCC-C-cHHHHHcCCHHHHHHcCCCCHHHHHHHH
Confidence 3457887788776554321 0 0011 22467899999999999988664
No 169
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=22.89 E-value=48 Score=36.24 Aligned_cols=69 Identities=20% Similarity=0.149 Sum_probs=43.0
Q ss_pred HHHHhC--CCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHHcCCCCCCchhhh--hcCCCCcHHHHHHHHHhh
Q 011579 140 RWMTKW--PTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGFPNTVSDL--RKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 140 ~l~~~~--pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~~~g~~p~~~~~L--~~lpGIG~~TA~~il~fa 214 (482)
+|++.. -++.+|..+..++|.++ =||.. +|.+|++.-+.-.. .| ....| +.|||||+.+|..++..
T Consensus 456 ~L~~~g~I~~~~DL~~L~~e~L~~l---~g~G~Ksa~nLl~aIe~sk~----~~-l~R~L~alGI~~VG~~~Ak~La~~- 526 (667)
T 1dgs_A 456 RLLEKGLVRDVADLYHLRKEDLLGL---ERMGEKSAQNLLRQIEESKH----RG-LERLLYALGLPGVGEVLARNLARR- 526 (667)
T ss_dssp HHHHTTSCSSGGGGGGGCCHHHHTT---SSCCSTTHHHHHHHHHHGGG----CC-HHHHHHHTTCSSCCHHHHHHHHHT-
T ss_pred HHHHcCCCCCHHHHHhcCHHHHhcc---cccchhhHHHHHHHHHHHhc----Cc-HHHhhHhhccCCccHHHHHHHHHH-
Confidence 455553 48888888887776543 36655 68888765443211 11 12233 37999999999988753
Q ss_pred cCC
Q 011579 215 FKE 217 (482)
Q Consensus 215 ~~~ 217 (482)
||.
T Consensus 527 Fgs 529 (667)
T 1dgs_A 527 FGT 529 (667)
T ss_dssp TSB
T ss_pred cCC
Confidence 543
No 170
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=22.36 E-value=28 Score=29.84 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=21.3
Q ss_pred CCCCc---hhhhhcCCCCcHHHHHHHHHhh
Q 011579 188 GFPNT---VSDLRKVPGIGNYTAGAIASIA 214 (482)
Q Consensus 188 ~~p~~---~~~L~~lpGIG~~TA~~il~fa 214 (482)
++|.. .-.|..|.|||+.+|..|+.-+
T Consensus 8 ~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~ 37 (126)
T 2vqe_M 8 EIPRNKRVDVALTYIYGIGKARAKEALEKT 37 (126)
T ss_dssp CCCCSSBHHHHHTTSSSCCSHHHHHHTTTT
T ss_pred cCCCCcEeeeehhccccccHHHHHHHHHHc
Confidence 46643 3579999999999999998643
No 171
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=21.16 E-value=44 Score=31.33 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=0.0
Q ss_pred hhcCCCCcHHHHHHHHHh
Q 011579 196 LRKVPGIGNYTAGAIASI 213 (482)
Q Consensus 196 L~~lpGIG~~TA~~il~f 213 (482)
|..|||||+++|..++..
T Consensus 170 LdgIpGIG~k~ak~Ll~~ 187 (220)
T 2nrt_A 170 LDNVPGIGPIRKKKLIEH 187 (220)
T ss_dssp HTTSTTCCHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHH
No 172
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=21.06 E-value=1e+02 Score=23.33 Aligned_cols=39 Identities=28% Similarity=0.256 Sum_probs=31.9
Q ss_pred HhCCCHHHHHhCCHHHHHHHHhccCcHH-HHHHHHHHHHHHHH
Q 011579 143 TKWPTIHHLAKASLEEVNEMWAGLGYYR-RARFLLEGAKMIVA 184 (482)
Q Consensus 143 ~~~pt~~~La~a~~eel~~~i~~lG~~~-RA~~L~~~a~~i~~ 184 (482)
+.|-|.++++.++.++|.. --|+.. ++.-|++.|+.++.
T Consensus 25 ~Gf~tve~vA~~~~~eL~~---I~G~dE~~a~~l~~~A~~~l~ 64 (70)
T 1u9l_A 25 EGFSTLEELAYVPMKELLE---IEGLDEPTVEALRERAKNALA 64 (70)
T ss_dssp TTCCCHHHHHHSCHHHHTT---STTCCHHHHHHHHHHHHHHHH
T ss_pred cCcCcHHHHHcCCHHHHhh---ccCCCHHHHHHHHHHHHHHHH
Confidence 4588999999999999743 358877 99999999887765
No 173
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=20.85 E-value=21 Score=33.72 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=0.0
Q ss_pred CchhhhhcCCCCcHHHHHHHHH
Q 011579 191 NTVSDLRKVPGIGNYTAGAIAS 212 (482)
Q Consensus 191 ~~~~~L~~lpGIG~~TA~~il~ 212 (482)
.+.++|.++ |||+++|..|..
T Consensus 202 As~eeL~~V-GIG~~~A~~I~~ 222 (226)
T 3c65_A 202 ATVEELQRA-NIPRAVAEKIYE 222 (226)
T ss_dssp ----------------------
T ss_pred CCHHHHHHc-CCCHHHHHHHHH
Confidence 456777788 888888877754
No 174
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=20.69 E-value=45 Score=32.54 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=14.0
Q ss_pred hhcCCCCcHHHHHHHHH
Q 011579 196 LRKVPGIGNYTAGAIAS 212 (482)
Q Consensus 196 L~~lpGIG~~TA~~il~ 212 (482)
+-.+||||++||--++.
T Consensus 205 iPGVpGIG~KTA~kLL~ 221 (290)
T 1exn_A 205 IRGVEGIGAKRGYNIIR 221 (290)
T ss_dssp BCCCTTCCHHHHHHHHH
T ss_pred CCCCCcCCHhHHHHHHH
Confidence 34689999999988775
Done!