Query 011580
Match_columns 482
No_of_seqs 136 out of 1469
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 02:57:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011580.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011580hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 4.7E-57 1E-61 448.0 35.0 405 32-471 32-437 (437)
2 KOG1304 Amino acid transporter 100.0 2E-56 4.4E-61 435.1 30.8 390 35-468 44-449 (449)
3 PTZ00206 amino acid transporte 100.0 3E-55 6.5E-60 448.0 32.8 399 37-469 59-465 (467)
4 PLN03074 auxin influx permease 100.0 1.2E-49 2.5E-54 404.8 34.6 398 35-482 43-465 (473)
5 PF01490 Aa_trans: Transmembra 100.0 7.3E-53 1.6E-57 428.4 -0.2 403 36-465 1-408 (409)
6 KOG1305 Amino acid transporter 100.0 2.1E-43 4.5E-48 349.0 27.8 401 35-471 3-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 1.7E-45 3.7E-50 337.3 6.6 410 32-478 111-524 (524)
8 COG0814 SdaC Amino acid permea 100.0 2.6E-31 5.7E-36 266.6 33.3 392 32-460 3-407 (415)
9 PRK10483 tryptophan permease; 99.9 1.1E-24 2.3E-29 215.2 31.8 356 33-436 6-373 (414)
10 PRK09664 tryptophan permease T 99.9 2.6E-24 5.6E-29 212.2 30.9 358 33-436 4-374 (415)
11 PF03222 Trp_Tyr_perm: Tryptop 99.9 2.4E-24 5.3E-29 214.9 31.1 353 37-439 2-368 (394)
12 PRK15132 tyrosine transporter 99.9 1.3E-23 2.8E-28 208.7 31.0 348 39-437 4-363 (403)
13 TIGR00837 araaP aromatic amino 99.9 1.6E-23 3.5E-28 210.7 25.1 346 44-437 3-360 (381)
14 PRK13629 threonine/serine tran 99.9 8.4E-20 1.8E-24 180.4 33.0 368 40-435 21-414 (443)
15 TIGR00814 stp serine transport 99.9 4.6E-19 1E-23 176.7 29.5 364 39-436 4-379 (397)
16 PRK15049 L-asparagine permease 99.7 1.6E-14 3.5E-19 149.8 34.1 369 33-436 25-406 (499)
17 PRK10655 potE putrescine trans 99.7 3.2E-14 6.9E-19 145.9 35.2 242 34-302 4-246 (438)
18 PRK10249 phenylalanine transpo 99.7 3.6E-14 7.7E-19 146.0 33.8 370 29-435 14-394 (458)
19 PRK10435 cadB lysine/cadaverin 99.7 8.4E-14 1.8E-18 142.5 34.2 245 33-305 2-247 (435)
20 PRK10644 arginine:agmatin anti 99.7 1.5E-13 3.2E-18 141.2 35.2 247 31-305 3-251 (445)
21 PRK11387 S-methylmethionine tr 99.7 1.6E-13 3.4E-18 141.9 34.8 251 32-305 10-266 (471)
22 TIGR01773 GABAperm gamma-amino 99.7 2.2E-13 4.8E-18 140.2 34.0 250 31-305 7-261 (452)
23 PRK10746 putative transport pr 99.7 4.7E-13 1E-17 137.7 34.7 371 33-436 7-388 (461)
24 PRK11049 D-alanine/D-serine/gl 99.7 4.4E-13 9.6E-18 138.4 34.2 247 33-302 17-268 (469)
25 PRK10238 aromatic amino acid t 99.7 3.3E-13 7.2E-18 138.8 32.7 370 31-436 7-386 (456)
26 COG1113 AnsP Gamma-aminobutyra 99.7 8.5E-14 1.8E-18 135.9 26.4 371 30-436 7-389 (462)
27 TIGR00905 2A0302 transporter, 99.7 8.3E-13 1.8E-17 136.6 35.5 252 34-305 5-258 (473)
28 PRK10580 proY putative proline 99.6 1.6E-12 3.5E-17 134.0 35.7 245 32-300 5-254 (457)
29 TIGR03810 arg_ornith_anti argi 99.6 8E-13 1.7E-17 136.6 33.3 370 36-437 1-381 (468)
30 PRK10836 lysine transporter; P 99.6 2.1E-12 4.6E-17 134.1 35.7 257 26-305 5-265 (489)
31 TIGR00909 2A0306 amino acid tr 99.6 5.7E-13 1.2E-17 136.4 30.4 291 35-345 2-299 (429)
32 PRK11021 putative transporter; 99.6 2.9E-12 6.4E-17 130.2 35.1 230 39-299 2-231 (410)
33 TIGR00906 2A0303 cationic amin 99.6 3.2E-12 6.9E-17 134.1 34.0 375 32-435 24-410 (557)
34 TIGR00913 2A0310 amino acid pe 99.6 4.2E-12 9E-17 131.8 34.3 245 35-300 1-252 (478)
35 KOG1287 Amino acid transporter 99.6 1.5E-13 3.3E-18 136.3 22.1 371 30-438 6-388 (479)
36 TIGR00930 2a30 K-Cl cotranspor 99.6 4.3E-12 9.3E-17 139.3 34.3 255 34-301 74-336 (953)
37 TIGR00911 2A0308 L-type amino 99.6 2E-12 4.3E-17 134.9 30.2 254 30-305 36-295 (501)
38 PRK11357 frlA putative fructos 99.5 1.3E-11 2.8E-16 126.9 31.5 245 32-301 4-251 (445)
39 TIGR00908 2A0305 ethanolamine 99.5 2E-11 4.3E-16 125.4 32.4 240 33-299 4-245 (442)
40 PRK10197 gamma-aminobutyrate t 99.5 4.2E-11 9.1E-16 122.9 32.4 348 47-435 3-367 (446)
41 TIGR00912 2A0309 spore germina 99.5 3.2E-11 6.9E-16 120.4 27.7 239 37-308 2-241 (359)
42 PF13520 AA_permease_2: Amino 99.4 1.2E-10 2.5E-15 119.3 28.8 293 39-355 2-303 (426)
43 COG0833 LysP Amino acid transp 99.4 9E-11 1.9E-15 117.3 26.0 368 33-435 41-427 (541)
44 COG0531 PotE Amino acid transp 99.4 1.1E-09 2.5E-14 113.3 32.1 253 30-306 6-262 (466)
45 PRK15238 inner membrane transp 99.3 5.7E-09 1.2E-13 108.7 35.0 255 34-301 5-267 (496)
46 TIGR03428 ureacarb_perm permea 99.3 1.2E-08 2.5E-13 105.9 36.1 259 33-306 10-274 (475)
47 TIGR00907 2A0304 amino acid pe 99.3 1.1E-08 2.4E-13 106.4 33.8 247 33-298 9-270 (482)
48 TIGR00910 2A0307_GadC glutamat 99.3 4.6E-09 1E-13 109.4 30.0 240 35-299 3-248 (507)
49 TIGR03813 put_Glu_GABA_T putat 99.3 1.5E-08 3.3E-13 105.0 32.2 247 38-306 3-255 (474)
50 KOG1286 Amino acid transporter 99.1 2.5E-09 5.3E-14 110.5 19.1 376 32-435 26-422 (554)
51 PF00324 AA_permease: Amino ac 99.1 1E-09 2.2E-14 113.9 14.5 244 47-308 6-263 (478)
52 PF03845 Spore_permease: Spore 99.1 9.7E-08 2.1E-12 93.7 25.7 237 37-308 1-237 (320)
53 KOG3832 Predicted amino acid t 98.8 3.2E-08 6.9E-13 86.0 10.0 216 43-271 17-302 (319)
54 KOG1289 Amino acid transporter 98.7 1.3E-05 2.9E-10 80.7 25.0 259 35-306 47-313 (550)
55 TIGR00800 ncs1 NCS1 nucleoside 98.5 0.00017 3.8E-09 74.0 29.6 191 106-307 77-273 (442)
56 COG3949 Uncharacterized membra 98.5 0.00012 2.6E-09 69.3 24.1 134 40-195 5-142 (349)
57 PRK11375 allantoin permease; P 98.4 0.002 4.4E-08 66.7 32.4 194 105-307 89-293 (484)
58 TIGR02358 thia_cytX probable h 98.2 0.005 1.1E-07 62.0 30.7 227 40-307 7-234 (386)
59 TIGR02119 panF sodium/pantothe 98.1 0.017 3.8E-07 59.8 33.5 154 33-206 37-195 (471)
60 PRK09442 panF sodium/panthothe 98.1 0.02 4.4E-07 59.5 33.7 154 33-206 38-196 (483)
61 TIGR00813 sss transporter, SSS 98.1 0.0061 1.3E-07 62.0 28.2 149 35-204 2-152 (407)
62 PRK12488 acetate permease; Pro 98.0 0.03 6.5E-07 59.2 35.2 152 34-207 65-219 (549)
63 COG1457 CodB Purine-cytosine p 98.0 0.0083 1.8E-07 60.3 27.1 263 109-429 85-355 (442)
64 PF00474 SSF: Sodium:solute sy 98.0 0.0014 3.1E-08 66.6 22.3 152 35-207 5-159 (406)
65 PRK11017 codB cytosine permeas 97.9 0.035 7.5E-07 56.3 30.5 173 105-306 71-244 (404)
66 COG0591 PutP Na+/proline sympo 97.9 0.051 1.1E-06 56.5 33.2 153 33-205 35-192 (493)
67 TIGR00796 livcs branched-chain 97.7 0.039 8.4E-07 55.0 26.1 73 46-129 3-78 (378)
68 PRK15419 proline:sodium sympor 97.5 0.17 3.7E-06 52.9 29.4 155 33-205 37-197 (502)
69 TIGR02711 symport_actP cation/ 97.5 0.18 4E-06 53.3 34.4 150 34-205 65-217 (549)
70 KOG1288 Amino acid transporter 97.4 0.014 3.1E-07 60.4 18.1 233 57-300 88-349 (945)
71 TIGR03648 Na_symport_lg probab 97.4 0.28 6.2E-06 51.9 37.2 151 33-204 29-181 (552)
72 COG1914 MntH Mn2+ and Fe2+ tra 97.3 0.22 4.7E-06 50.2 28.9 133 37-194 16-152 (416)
73 TIGR00835 agcS amino acid carr 97.3 0.12 2.6E-06 52.2 24.0 88 36-126 45-138 (425)
74 COG1953 FUI1 Cytosine/uracil/t 97.1 0.37 7.9E-06 49.0 31.3 199 105-316 103-317 (497)
75 TIGR02121 Na_Pro_sym sodium/pr 97.1 0.46 1E-05 49.5 32.0 156 34-205 34-193 (487)
76 PF02133 Transp_cyt_pur: Perme 97.0 0.011 2.4E-07 60.7 14.0 247 34-303 5-259 (440)
77 PF02554 CstA: Carbon starvati 97.0 0.02 4.2E-07 55.8 14.2 114 30-148 44-157 (376)
78 PRK09395 actP acetate permease 97.0 0.65 1.4E-05 49.2 36.3 150 34-204 67-218 (551)
79 KOG2082 K+/Cl- cotransporter K 96.9 0.3 6.4E-06 51.5 22.3 107 37-147 114-221 (1075)
80 KOG2083 Na+/K+ symporter [Inor 96.6 0.0087 1.9E-07 61.1 8.6 233 39-296 32-274 (643)
81 PRK00701 manganese transport p 96.4 1.3 2.9E-05 45.3 30.9 45 106-150 95-139 (439)
82 PRK10484 putative transporter; 96.3 1.8 4E-05 45.5 34.6 158 33-205 35-198 (523)
83 PF01566 Nramp: Natural resist 95.8 2.4 5.2E-05 42.2 23.4 80 106-199 43-124 (358)
84 PRK15015 carbon starvation pro 95.4 0.14 3.1E-06 53.4 10.9 112 30-146 75-186 (701)
85 COG1966 CstA Carbon starvation 94.8 0.18 3.9E-06 51.5 9.5 114 29-147 43-156 (575)
86 TIGR00796 livcs branched-chain 94.7 0.34 7.4E-06 48.4 11.4 76 106-195 256-331 (378)
87 PLN00151 potassium transporter 94.4 4.8 0.0001 43.7 19.3 118 174-303 277-399 (852)
88 PF05525 Branch_AA_trans: Bran 93.9 0.46 9.9E-06 48.0 10.3 140 47-207 205-347 (427)
89 PF01235 Na_Ala_symp: Sodium:a 93.9 8.2 0.00018 39.0 20.8 56 31-87 12-68 (416)
90 PF05525 Branch_AA_trans: Bran 93.6 9.4 0.0002 38.8 23.9 72 39-121 4-78 (427)
91 COG1114 BrnQ Branched-chain am 93.6 0.75 1.6E-05 45.6 10.7 132 47-197 207-341 (431)
92 COG4147 DhlC Predicted symport 91.6 17 0.00037 37.0 28.6 182 105-302 104-293 (529)
93 PHA02764 hypothetical protein; 87.3 29 0.00063 33.5 15.9 97 33-136 9-108 (399)
94 PRK15433 branched-chain amino 86.9 4.4 9.5E-05 41.2 9.6 121 47-186 209-332 (439)
95 PLN00149 potassium transporter 86.9 52 0.0011 36.0 22.8 170 174-355 201-375 (779)
96 PLN00150 potassium ion transpo 85.3 62 0.0013 35.4 21.3 118 174-303 217-339 (779)
97 PLN00148 potassium transporter 83.9 72 0.0016 34.9 22.8 118 174-303 200-322 (785)
98 COG0814 SdaC Amino acid permea 82.0 63 0.0014 32.9 17.7 152 276-436 221-376 (415)
99 KOG2349 Na+:iodide/myo-inosito 71.1 63 0.0014 34.2 12.1 245 35-305 44-302 (585)
100 KOG2466 Uridine permease/thiam 69.5 1.4E+02 0.0031 30.7 15.4 261 35-316 53-331 (572)
101 COG4145 PanF Na+/panthothenate 66.3 1.5E+02 0.0031 29.6 25.4 148 35-204 38-192 (473)
102 TIGR01197 nramp NRAMP (natural 60.3 1.9E+02 0.0042 29.1 27.9 97 46-151 12-110 (390)
103 COG1115 AlsT Na+/alanine sympo 59.4 2.1E+02 0.0046 29.2 22.3 64 33-97 58-125 (452)
104 PRK15433 branched-chain amino 59.0 2.2E+02 0.0047 29.2 27.4 71 39-120 9-82 (439)
105 COG4858 Uncharacterized membra 58.7 93 0.002 27.4 8.7 33 63-95 118-150 (226)
106 KOG1289 Amino acid transporter 49.8 3.3E+02 0.0072 28.6 14.4 46 106-151 326-371 (550)
107 TIGR00906 2A0303 cationic amin 49.2 3.5E+02 0.0077 28.7 15.1 45 107-151 301-345 (557)
108 KOG1619 Cytochrome b [Energy p 45.2 2.6E+02 0.0055 25.9 9.9 93 246-346 59-151 (245)
109 PF00209 SNF: Sodium:neurotran 45.2 3.9E+02 0.0085 28.1 28.2 30 39-68 6-36 (523)
110 PF01235 Na_Ala_symp: Sodium:a 44.3 1.5E+02 0.0032 30.2 9.1 148 49-212 231-387 (416)
111 PLN02680 carbon-monoxide oxyge 41.6 2.9E+02 0.0063 25.6 12.1 68 276-347 76-143 (232)
112 cd08765 Cyt_b561_CYBRD1 Verteb 38.3 1.7E+02 0.0036 25.2 7.3 68 276-347 44-111 (153)
113 PRK09928 choline transport pro 37.4 5.4E+02 0.012 28.1 12.4 145 68-226 358-511 (679)
114 cd08763 Cyt_b561_CYB561 Verteb 36.5 2.5E+02 0.0054 23.8 8.0 68 276-347 37-104 (143)
115 PRK13183 psbN photosystem II r 35.9 45 0.00097 22.0 2.6 30 278-307 4-33 (46)
116 TIGR00909 2A0306 amino acid tr 35.5 3.7E+02 0.0079 27.2 10.9 47 106-152 265-311 (429)
117 PF02028 BCCT: BCCT family tra 33.1 1.4E+02 0.003 31.1 7.1 144 68-220 341-485 (485)
118 cd08764 Cyt_b561_CG1275_like N 32.2 4E+02 0.0086 24.4 10.8 70 276-347 54-123 (214)
119 PF05915 DUF872: Eukaryotic pr 31.7 2.8E+02 0.0061 22.5 8.3 66 39-110 40-112 (115)
120 TIGR00794 kup potassium uptake 31.7 7.2E+02 0.016 27.2 21.2 168 174-356 171-343 (688)
121 PF02468 PsbN: Photosystem II 31.6 52 0.0011 21.4 2.3 25 282-306 5-29 (43)
122 cd08766 Cyt_b561_ACYB-1_like P 30.2 2.3E+02 0.005 24.1 6.8 68 276-347 37-104 (144)
123 cd08762 Cyt_b561_CYBASC3 Verte 29.1 4.1E+02 0.0088 23.5 9.5 68 276-347 67-134 (179)
124 PF05805 L6_membrane: L6 membr 28.9 1.6E+02 0.0034 26.4 5.7 61 410-470 47-117 (195)
125 CHL00020 psbN photosystem II p 28.8 49 0.0011 21.5 1.9 27 281-307 4-30 (43)
126 PRK11281 hypothetical protein; 28.5 7.5E+02 0.016 28.9 12.4 31 276-306 540-570 (1113)
127 PRK10920 putative uroporphyrin 27.9 88 0.0019 31.4 4.5 24 33-56 31-54 (390)
128 PRK09950 putative transporter; 26.3 7.8E+02 0.017 25.8 12.6 155 68-228 350-506 (506)
129 PRK12768 CysZ-like protein; Re 26.0 5.4E+02 0.012 23.9 9.6 29 264-297 8-36 (240)
130 PRK10745 trkD potassium transp 25.2 8.8E+02 0.019 26.1 18.6 261 69-356 49-317 (622)
131 PLN02351 cytochromes b561 fami 24.5 5.8E+02 0.013 23.8 14.0 74 265-347 73-146 (242)
132 KOG2290 Rhomboid family protei 23.8 3.8E+02 0.0083 27.3 7.9 27 401-427 559-585 (652)
133 PF03134 TB2_DP1_HVA22: TB2/DP 23.1 2.1E+02 0.0046 22.0 5.1 37 411-447 2-40 (94)
134 PF02705 K_trans: K+ potassium 22.2 9.4E+02 0.02 25.4 22.2 257 69-356 36-306 (534)
135 PF00324 AA_permease: Amino ac 21.7 5.8E+02 0.013 26.3 9.5 47 106-152 275-321 (478)
136 PRK04949 putative sulfate tran 20.1 7.2E+02 0.016 23.3 12.6 40 262-306 15-54 (251)
137 KOG4812 Golgi-associated prote 20.1 2.5E+02 0.0055 25.9 5.4 65 393-462 163-242 (262)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-57 Score=447.96 Aligned_cols=405 Identities=40% Similarity=0.702 Sum_probs=358.5
Q ss_pred CCccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHH
Q 011580 32 GRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAV 111 (482)
Q Consensus 32 ~~~~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~ 111 (482)
..++|++|++++.+|.++.++|.|+|++|||++++||+.|++++++.++++.||+.+|.+|.+.+++..++|.++|.|++
T Consensus 32 ~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~ 111 (437)
T KOG1303|consen 32 ITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLG 111 (437)
T ss_pred cccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHH
Confidence 35588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchh
Q 011580 112 RSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQL 191 (482)
Q Consensus 112 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 191 (482)
+++||+++++++.+++.+.++|+|+.|++..+|++..+++..+.+.. ..+...|+++++++.+|++++||++.+
T Consensus 112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~~l 185 (437)
T KOG1303|consen 112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFHSL 185 (437)
T ss_pred HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcchh
Confidence 99999999999999999999999999999999999999998765432 222467899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCC
Q 011580 192 WWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSP 271 (482)
Q Consensus 192 ~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 271 (482)
+++|..+.++.+.+..+.+...+....+.+..+.+... .+ ..+ ..+++++++.|+|.||.++|+++++||+|
T Consensus 186 ~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~--~~-~~~-----~~f~a~g~iaFaf~gH~v~peIq~tMk~p 257 (437)
T KOG1303|consen 186 SYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLD--LG-TIP-----TVFTALGIIAFAYGGHAVLPEIQHTMKSP 257 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCccc--CC-CCc-----chhhhhhheeeeecCCeeeeehHhhcCCc
Confidence 99999999999988877777766665444322222111 11 011 11899999999999999999999999999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhcccchHHHH
Q 011580 272 PSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFI 351 (482)
Q Consensus 272 ~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~ 351 (482)
++++|++.+++.+++++|+..++.||++|||+++++++.|++ .|.|+...+|+++.+|++.+|+++..|+.+.+
T Consensus 258 ----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~ 331 (437)
T KOG1303|consen 258 ----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPLFDVV 331 (437)
T ss_pred ----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcchHHHH
Confidence 569999999999999999999999999999999999999985 68999999999999999999999999999999
Q ss_pred HHHhhhhCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhHhhhhHHHHH
Q 011580 352 EKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYI 431 (482)
Q Consensus 352 ~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~~~~l 431 (482)
|+....+.++ + . + +..+.|.+.|..+++.++++|+.+|.|+++++++||+....+++++|+++|+
T Consensus 332 E~~~~~~~~~--~-~-----------~-~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl 396 (437)
T KOG1303|consen 332 EKLIGVKHPD--F-K-----------K-RSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYL 396 (437)
T ss_pred HHHhccCCcc--c-c-----------c-cccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987654332 1 0 1 2347899999999999999999999999999999999999999999999999
Q ss_pred HHhCCCccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 011580 432 AQKKIPKWSTKWLCLQIL-SVACLIITIAAAAGSIAGVVTD 471 (482)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~-~~~~~~~~v~g~~~si~~ii~~ 471 (482)
+.+|+++...+|+..+.. .++++++++....+++++++.+
T Consensus 397 ~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 397 LIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 999999999999999988 6888999999999998888753
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-56 Score=435.13 Aligned_cols=390 Identities=19% Similarity=0.267 Sum_probs=337.6
Q ss_pred cccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhh
Q 011580 35 KRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSN 114 (482)
Q Consensus 35 ~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~ 114 (482)
++..|..++..|++|+++|+|+|++|+||+++|++.|.+..++++.++.|+++.+++|.++.+++.+....+|++.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 44568999999999999999999999999999999999999999999999999999999776666555567888888665
Q ss_pred ----------hcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhc
Q 011580 115 ----------LGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQ 184 (482)
Q Consensus 115 ----------~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~ 184 (482)
+||++|.+++..+.+.++|.|++|+++.++++.++.+.. ....++.+.|+.+..+..+++++
T Consensus 124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~--------~~~~~s~~~~i~~~~~~~lll~~ 195 (449)
T KOG1304|consen 124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH--------SPGVLSVRLYILIQLPPLLLLNL 195 (449)
T ss_pred HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc--------CCCCccHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999999999999999999821 11145667888889999999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhh
Q 011580 185 IPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEI 264 (482)
Q Consensus 185 ~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i 264 (482)
+|++|.|+.+|.+++++.+. .++...++..++.+...+.+. ..++.+....+|+.+|||+|+.++.|+
T Consensus 196 Ir~Lk~Lsp~Sl~Anv~~~~----g~~ii~~y~~~~~~~~~~~~~--------~~~~~~~~lf~GtaifafEGig~VLPl 263 (449)
T KOG1304|consen 196 IRNLKILSPFSLFANVFILV----GLAIIMYYLVQDLPPTSDLPA--------VTGWSGLPLFFGTAIFAFEGIGMVLPL 263 (449)
T ss_pred HHhhHHhhHHHHHHHHHHHH----HHHHHHHHHHhccCCcccccc--------ccchhhhHHHHHHHHHHhccceEEEeh
Confidence 99999999999999999875 555556666666653333332 223457889999999999999999999
Q ss_pred HhhhCCCCccccchh---hHHHHHHHHHHHHHHHHHhHHhhhcCCCcccccccccccCCCchHHHHHHHHHHHHHHHhhh
Q 011580 265 QDTVKSPPSESKTMK---KASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQ 341 (482)
Q Consensus 265 ~~~m~~p~~~~~~~~---~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~p 341 (482)
+++||+| ++++ +++..+|.+++++|+.+|++||++||+++++.+++|+| + +|+.+.+++++++.+..+||
T Consensus 264 En~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP--~-~~l~~~Vkl~~ai~I~ls~p 336 (449)
T KOG1304|consen 264 ENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP--Q-EILSQTVKLLLAIAIFLTYP 336 (449)
T ss_pred hhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC--c-cHHHHHHHHHHHHHHHHcCc
Confidence 9999999 7899 99999999999999999999999999999999999998 4 89999999999999999999
Q ss_pred hcccchHHHHHHHhhhhCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhh
Q 011580 342 VFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPL 421 (482)
Q Consensus 342 l~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~l~Ga~~~~~l 421 (482)
++++|..+.+|+.+.++.++ .+.++....+|.++++++.++|..+||++.+++++||++++.+
T Consensus 337 LQ~yv~~eIi~~~i~~k~~~-----------------~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L 399 (449)
T KOG1304|consen 337 LQFYVPIEIIEPGIRKKFSE-----------------NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLL 399 (449)
T ss_pred hhhhhhHHHHHHhHHHhcCc-----------------chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHH
Confidence 99999999999987665432 1134888999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHhCCCcc---chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011580 422 TVYFPVEMYIAQKKIPKW---STKWLCLQILSVACLIITIAAAAGSIAGV 468 (482)
Q Consensus 422 ~~ilP~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~v~g~~~si~~i 468 (482)
++++|++++++.++++.+ .++++....++++|++..++|+|.++.++
T Consensus 400 ~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 400 ALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999998876542 34445556678888999999999998753
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=3e-55 Score=447.98 Aligned_cols=399 Identities=15% Similarity=0.197 Sum_probs=311.6
Q ss_pred cchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhc
Q 011580 37 TGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLG 116 (482)
Q Consensus 37 ~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G 116 (482)
.++..++.+|++|+++|+|+|++|+||+++||++|++++++++.++.|+.+++.++.++. +. .+|+|++++++|
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~----~~--~sY~~la~~~~G 132 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT----NI--RTYEGVARVLLG 132 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CC--CCHHHHHHHHhC
Confidence 456789999999999999999999999999999999999999999999999999987752 22 399999999999
Q ss_pred CcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHHH
Q 011580 117 GFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSI 196 (482)
Q Consensus 117 ~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 196 (482)
|++++++++++.+.++|+|++|+++.+|.+..+++....+.. .......+..+.++..++++|++++|++++|+++|.
T Consensus 133 ~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~--~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~ 210 (467)
T PTZ00206 133 PWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDF--LKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVST 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccch--hhhccCcEEeeeehhhhHhhhcccccchHHHHHHHH
Confidence 999999999999999999999999999999998863211000 000011223344556778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccccccc-----ccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCC
Q 011580 197 VAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGT-----VSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSP 271 (482)
Q Consensus 197 ~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 271 (482)
+++.++++..+.+++... .++.+.+. +....++ ........+.+.++++++|||.||.+++++++|||+|
T Consensus 211 i~~~~i~~~vi~ivi~~~---~~~~~~~~--~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~ 285 (467)
T PTZ00206 211 IAVSFMVYLVIVIVVHSC---MNGLPENI--KNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNR 285 (467)
T ss_pred HHHHHHHHHHhhhhhhhh---cccCcccc--cccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhccc
Confidence 999887654433322222 12221111 1111110 0000112357899999999999999999999999998
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhcccchHHHH
Q 011580 272 PSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFI 351 (482)
Q Consensus 272 ~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~ 351 (482)
++ +|+.+++..++.+++++|.++|++||+.||++++++++.|++. ..+....++++++++.++.+||++.+|+|+.+
T Consensus 286 t~--~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p-~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i 362 (467)
T PTZ00206 286 SV--GKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP-VNEPAIMVGFVGVLVKLFVSYALLGMACRNAL 362 (467)
T ss_pred ch--hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCC-CCCchhhHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 76 7899999999999999999999999999999999999999831 23456778899999999999999999999999
Q ss_pred HHHhhhhCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhHhhhhHHHHH
Q 011580 352 EKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYI 431 (482)
Q Consensus 352 ~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~~~~l 431 (482)
++.+. |+.+ +.+ .+++...+..+++.++++|+++||++.+++++||++++.++|++|+++|+
T Consensus 363 ~~~~~--~~~~---------~~~-------~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l 424 (467)
T PTZ00206 363 YDVIG--WDAR---------KVA-------FWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFM 424 (467)
T ss_pred HHHhC--CCcc---------cCc-------hhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 88652 2110 011 24555666677778899999999999999999999999999999999999
Q ss_pred HHhCC---CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011580 432 AQKKI---PKWSTKWLCLQILSVACLIITIAAAAGSIAGVV 469 (482)
Q Consensus 432 ~~~~~---~~~~~~~~~~~~~~~~~~~~~v~g~~~si~~ii 469 (482)
+.... +....+|...+.++++|++..+.|||+++++.+
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 425 YSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred hcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 84321 222223445666788888888999999999876
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.2e-49 Score=404.76 Aligned_cols=398 Identities=17% Similarity=0.202 Sum_probs=315.6
Q ss_pred cccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcC---CCCCCcc----cccH
Q 011580 35 KRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSG---DPVTGKR----NYTY 107 (482)
Q Consensus 35 ~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~---~~~~g~~----~~~y 107 (482)
.+.++..++.++++++.+|.|+|+||+||+++||++|++.++++++++.||++++.+++.+. +++++.+ ..+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999865321 2222211 1368
Q ss_pred HHHHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCC
Q 011580 108 VDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPD 187 (482)
Q Consensus 108 ~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~ 187 (482)
.|+++..+||+++.+..+..++.+++.|+.|++..++.+..+.. .++.+.|.++++++.+|++++|+
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~-------------~~~~~~~~~i~~~v~~~~~~i~s 189 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND-------------NLDKRTWTYIFGACCATTVFIPS 189 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC-------------CcCCCeEEeehHHHHHHHHHccC
Confidence 99999999999999999999999999999999988877664421 34557788899999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhh
Q 011580 188 FDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDT 267 (482)
Q Consensus 188 l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 267 (482)
+++++++|.++..+++++.+.++...+... .+ ++... ....++...+.++++++|+|+||.++|++++|
T Consensus 190 l~~l~~~S~ig~~~tl~~av~i~i~~i~~~---~~-----~~~~~---~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~ 258 (473)
T PLN03074 190 FHNYRIWSFLGLLMTTYTAWYMTIAALSHG---QV-----EGVKH---SGPTKLVLYFTGATNILYTFGGHAVTVEIMHA 258 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CC-----CCCCC---CCchhHHHHHHHHHHHHHHhcccccHHHHHHh
Confidence 999999999999886654332322222221 11 11110 01224456778888999999999999999999
Q ss_pred hCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCccc--ccccccccCCCchHHHHHHHHHHHHHHHhhhhccc
Q 011580 268 VKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPG--NLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQ 345 (482)
Q Consensus 268 m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~ 345 (482)
||+| ++++++..++...++.+|+.+|+.||+.||+++.+ +.+.|+| .+. ...+++++++++...+||+++.
T Consensus 259 M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp--~~~-~~~~~~~~~~i~~~~sy~l~~~ 331 (473)
T PLN03074 259 MWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP--RSG-WRDAAVILMLIHQFITFGFACT 331 (473)
T ss_pred ccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC--Cch-HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 68999999999999999999999999999998764 4565565 223 4679999999999999999999
Q ss_pred chHHHHHHHhhhhCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhHhhh
Q 011580 346 PLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYF 425 (482)
Q Consensus 346 p~~~~~~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~l~Ga~~~~~l~~il 425 (482)
|+.+..|+....+ + . +....|+..|+.+++.++++|+.+|+|+++++++||++++.+++++
T Consensus 332 p~~~~~e~~~~~~--~----~-------------k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~ 392 (473)
T PLN03074 332 PLYFVWEKAIGVH--D----T-------------KSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYII 392 (473)
T ss_pred hHHHHHHHHhccc--c----c-------------ccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 9999988864321 1 0 1136789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhCCC-------------ccchhH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccCCCCCC
Q 011580 426 PVEMYIAQKKIP-------------KWSTKW--LCLQILSVACLIIT-IAAAAGSIAGVVTDLKSYKPFSTSY 482 (482)
Q Consensus 426 P~~~~l~~~~~~-------------~~~~~~--~~~~~~~~~~~~~~-v~g~~~si~~ii~~~~~~~~f~~~~ 482 (482)
|+++|++.++++ .++++| +.+..+++++.+++ +.|+|+|+.++++++++|+.|+|.|
T Consensus 393 P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~~~~ 465 (473)
T PLN03074 393 PSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFAKCY 465 (473)
T ss_pred HHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhhhhc
Confidence 999999866442 112222 34444555444554 6999999999999999999998754
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=7.3e-53 Score=428.43 Aligned_cols=403 Identities=27% Similarity=0.388 Sum_probs=325.6
Q ss_pred ccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhh
Q 011580 36 RTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNL 115 (482)
Q Consensus 36 ~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~ 115 (482)
||+|+++++++++|+++|+|+|++|++|+++||++|++++++++.++.||.+++.++.++.+ ++++..+|+|++++++
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--cccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999988644 2223459999999999
Q ss_pred cCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHH
Q 011580 116 GGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLS 195 (482)
Q Consensus 116 G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 195 (482)
||++++++++++.+.++|.+++|++..+|.+.++++....+ ...++.++.++..++++|++++|+++.++++|
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s 151 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-------LFISRYVWIIIFALIVLPLSFLKNLKSLRYLS 151 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccc-------ccccccccccccccccccccccchhhHHHHHh
Confidence 99999999999999999999999999999999999754321 24556778888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCCCccc
Q 011580 196 IVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSES 275 (482)
Q Consensus 196 ~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~ 275 (482)
.++.++++...++.+...... ....+.+...+ +..+..++++++.++++++|||.||.++|++++|||+|++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~- 224 (409)
T PF01490_consen 152 ILGLFSIFYFIVIVVIYIISY-GPGEPSGVPSP-----PVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKF- 224 (409)
T ss_pred hhhhhccceeeeeecceeeee-ecccccccccc-----cccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccc-
Confidence 999998875311111111111 11111111111 11223456789999999999999999999999999999532
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhcccchHHHHHHHh
Q 011580 276 KTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQA 355 (482)
Q Consensus 276 ~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~ 355 (482)
+|++++...++.+++++|+++|+.||++||+++++|++.|++ ++++...++++++.++++.+||+..+|.++.+++.+
T Consensus 225 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~ 302 (409)
T PF01490_consen 225 KKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLIIIARILLVISLLLSYPLQLFPARNSLENLL 302 (409)
T ss_pred cccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--CcccccccccccchhhhhhccccccchhHhhhhhhe
Confidence 245599999999999999999999999999999999999987 445788899999999999999999999999999986
Q ss_pred hhhCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhHhhhhHHHHHHHhC
Q 011580 356 HQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKK 435 (482)
Q Consensus 356 ~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~~~~l~~~~ 435 (482)
.++.+. .++... .+...+++|..+|+++++.++++|..+||++.+++++||++++.++|++|+++|+|.++
T Consensus 303 ~~~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~ 373 (409)
T PF01490_consen 303 FKRAAS----SRDSPK-----NTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFK 373 (409)
T ss_pred eccccc----cccccc-----cccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhc
Confidence 543000 000000 11223477899999999999999999999999999999999999999999999999988
Q ss_pred CCccchhHHH-----HHHHHHHHHHHHHHHHHHHH
Q 011580 436 IPKWSTKWLC-----LQILSVACLIITIAAAAGSI 465 (482)
Q Consensus 436 ~~~~~~~~~~-----~~~~~~~~~~~~v~g~~~si 465 (482)
+++++.+++. .+.+++++++..+.|+|.++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 374 RKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred ccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 7765444432 34455667777777777664
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-43 Score=348.98 Aligned_cols=401 Identities=20% Similarity=0.307 Sum_probs=316.5
Q ss_pred cccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhh
Q 011580 35 KRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSN 114 (482)
Q Consensus 35 ~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~ 114 (482)
+++.|..++++|+.|+++|+|++++|+||++.|++.|++++.+++.++.++.+++.+|.++. +++ +|++++++.
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~----~~~--ty~~l~~~~ 76 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKS----GER--TYSSLGDLI 76 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhc----CCC--CHHHHHHHH
Confidence 45568999999999999999999999999999999999999999999999999999998853 333 999999999
Q ss_pred hcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCc-hhHHHHHHHHHhhcCCCcchhHH
Q 011580 115 LGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNP-YMIAFGIVEIVLSQIPDFDQLWW 193 (482)
Q Consensus 115 ~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~-~~~i~~~i~~pl~~~~~l~~l~~ 193 (482)
+|+.++....+.......| |++|++..+|.++.+............. ...++. +++....++.|+++.|++.++++
T Consensus 77 ~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~--~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~ 153 (411)
T KOG1305|consen 77 FGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSH--YLDRNFLILLVLLFIILPLSLLKNLDSLKY 153 (411)
T ss_pred cCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccc--cccceeEeehHHHHHHHHHHHHHhhhhHHH
Confidence 9999977777777766667 7999999999999777643221111111 122333 46678889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCCCc
Q 011580 194 LSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPS 273 (482)
Q Consensus 194 ~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~ 273 (482)
.|.++..+.++..++.+.. .............. ......+++.+.+++++.|+|.||.++.++++|||||+.
T Consensus 154 tS~~s~~~~~~fv~~vv~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~ 225 (411)
T KOG1305|consen 154 TSALSLASVVYFVVLVVYK----YFQGPCALGRLSYL----VPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSV 225 (411)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhcccccCCcccc----cCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchH
Confidence 9999999988755443332 22211100000000 112223368889999999999999999999999999986
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCcccccccccccCCCc----hHHHHHHHHHHHHHHHhhhhcccchHH
Q 011580 274 ESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPY----WLLDIANAAIVIHLVGAYQVFCQPLFA 349 (482)
Q Consensus 274 ~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~s~pl~~~p~~~ 349 (482)
++++++...+...++++|..+|.+||+.||+++.+|++.+++..... +....++..+.++++..+|+..+|+|.
T Consensus 226 --~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~ 303 (411)
T KOG1305|consen 226 --KKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRM 303 (411)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 88999999999999999999999999999999999999998733222 235799999999999999999999999
Q ss_pred HHHHHhhhhCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhHhhhhHHH
Q 011580 350 FIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEM 429 (482)
Q Consensus 350 ~~~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~~~ 429 (482)
.++..+....|+. + +....++.+++..++..+.+.|+.+|++++++.++||+++..++|++|+++
T Consensus 304 ~l~~~~~~~~~~~----~-----------~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~ 368 (411)
T KOG1305|consen 304 NLDELLFPYQPGL----T-----------SFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALY 368 (411)
T ss_pred HHHHHhcccCCCC----C-----------CccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHh
Confidence 9888765544331 0 112356788999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011580 430 YIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTD 471 (482)
Q Consensus 430 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~si~~ii~~ 471 (482)
|++.+|. + .+.....+...++++.+++.|+..-+.++..+
T Consensus 369 yl~~~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 369 YLKASKK-K-SREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred hheeecc-c-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998886 2 22333455556677777777777666666543
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-45 Score=337.30 Aligned_cols=410 Identities=17% Similarity=0.202 Sum_probs=339.9
Q ss_pred CCccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCc---ccccHH
Q 011580 32 GRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGK---RNYTYV 108 (482)
Q Consensus 32 ~~~~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~---~~~~y~ 108 (482)
++.+.|.+.+||..|..|++-|.=+++||+|....||. ++..++.++.+++||+.+|++|..+.++ .|. ...+|.
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~-dGevVrvRdsYv 188 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGE-DGEVVRVRDSYV 188 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCC-CCcEEEeehhHH
Confidence 45567889999999999999999999999999999986 9999999999999999999999987765 332 126999
Q ss_pred HHHHhhhcCc-ceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCC
Q 011580 109 DAVRSNLGGF-QVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPD 187 (482)
Q Consensus 109 ~l~~~~~G~~-~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~ 187 (482)
+++..+++|+ |++.+.+...+.+..+|+.|++..+|.+..-+++. ..+.+-|+++....++|.+++++
T Consensus 189 aIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~-----------svd~~sWm~i~~a~LLpc~FLk~ 257 (524)
T KOG4303|consen 189 AIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL-----------SVDKASWMMITSASLLPCSFLKD 257 (524)
T ss_pred HHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC-----------CccccchhhhhhHHHhhhHHHHH
Confidence 9999999996 55899999999999999999999999998777632 34457789999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhh
Q 011580 188 FDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDT 267 (482)
Q Consensus 188 l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 267 (482)
+|..+.+|++.+++-+.+-++++.+++.+..+ . .|.+++...+.-+++.++|+++|+|..|..+|.+...
T Consensus 258 Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~d-W---------~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGN 327 (524)
T KOG4303|consen 258 LKIVSRLSFFCTISHLVINLIMVLYCLSFVSD-W---------SWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGN 327 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-c---------cceeEEEEEEcccCceEEEEEEEeeeceeeccccccc
Confidence 99999999999998887776666666554321 1 1222222333346778899999999999999999999
Q ss_pred hCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhcccch
Q 011580 268 VKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPL 347 (482)
Q Consensus 268 m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 347 (482)
|++| .+++..+.++-+..+++-..+|..||+.||+.++..|++|+| ..-...++|+++++..+.+||+-++.+
T Consensus 328 M~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp---~qsfk~~VN~fLV~KALLSYPLPfyAA 400 (524)
T KOG4303|consen 328 MKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP---NQSFKILVNLFLVVKALLSYPLPFYAA 400 (524)
T ss_pred cCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC---ccchhhhhhHHHHHHHHHcCCchHHHH
Confidence 9999 579999999999999999999999999999999999999986 223567999999999999999999999
Q ss_pred HHHHHHHhhhhCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhHhhhhH
Q 011580 348 FAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPV 427 (482)
Q Consensus 348 ~~~~~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~ 427 (482)
.+.+|+-+.+..|..+|-.-. . +..+.+-+.+.+|.++++.+.++|+.+|.|..+++++|++++++++|++|+
T Consensus 401 velLe~nlF~g~p~t~Fpscy----s---~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~ 473 (524)
T KOG4303|consen 401 VELLENNLFLGYPQTPFPSCY----S---PDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPA 473 (524)
T ss_pred HHHHHHhhhcCCCCCCCceee----C---CCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHH
Confidence 999999766554443220000 0 011223444678999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 011580 428 EMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKPF 478 (482)
Q Consensus 428 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~si~~ii~~~~~~~~f 478 (482)
++|++++++............++++|...++-|.|-|-..++++++...+|
T Consensus 474 lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~~ 524 (524)
T KOG4303|consen 474 LFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADSD 524 (524)
T ss_pred HHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCCC
Confidence 999999876543334445667788888888999999999999999987654
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-31 Score=266.65 Aligned_cols=392 Identities=17% Similarity=0.185 Sum_probs=285.4
Q ss_pred CCccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHH
Q 011580 32 GRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAV 111 (482)
Q Consensus 32 ~~~~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~ 111 (482)
++.+++.+..+++.++.+++||+|+|++|++++..|++++++++++.+.+++++.+++.|+..+.+.. ..++.+++
T Consensus 3 ~~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~----~~~~~~~~ 78 (415)
T COG0814 3 SSMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNG----KASITSLV 78 (415)
T ss_pred ccccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----cccHHHHH
Confidence 34566678999999999999999999999999999999999999999999999999999998865432 13999999
Q ss_pred HhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchh
Q 011580 112 RSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQL 191 (482)
Q Consensus 112 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 191 (482)
++.+||+++++.++.+.+.+++.+.+|.+..+|.+.+.++..... . ..+++.+.+++..++.+++..++...+
T Consensus 79 ~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~-----~--~~~r~~~~lif~~~~~~l~~~~~~~~l 151 (415)
T COG0814 79 EDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGL-----N--PLPRKLGSLIFALVLAFLSWLGTLAVL 151 (415)
T ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhccc-----C--CcchHHHHHHHHHHHHHHHHhchhHHH
Confidence 999999999999999999999999999999999999999853211 0 145677788888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCC
Q 011580 192 WWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSP 271 (482)
Q Consensus 192 ~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 271 (482)
+..+.+....+.+..+.. ++...+..+.. ... .+ ...+..+.....++|+++|||+||+++|++.+|||++
T Consensus 152 k~ts~l~~~~v~~~~~l~----~~~~~~~~~~~--l~~--~~-~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~ 222 (415)
T COG0814 152 KITSLLVFGKVIYLVLLV----VYLIPHWNPAN--LFA--LP-SASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKN 222 (415)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHhcccCHHH--Hhc--cc-ccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccc
Confidence 999999988876533322 22221111000 000 00 0001334467799999999999999999999999998
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCcccccccccccCCCc------------hHHHHHHHHHHHHHHHh
Q 011580 272 PSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPY------------WLLDIANAAIVIHLVGA 339 (482)
Q Consensus 272 ~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~s 339 (482)
.+ ++.+|+...+..+..++|..+++++|..+|+.++++++++++ +... +.....+++..+.+..+
T Consensus 223 ~~--~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~-~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tS 299 (415)
T COG0814 223 SK--KAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKE-QNISLLSALAGVINSPILSIALNIFALFAIATS 299 (415)
T ss_pred hh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccC-chHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 73 349999999999999999999999999999999999999875 1111 13333444444444444
Q ss_pred hhhcccchHHHHHHHhhhhCCCCcccccccccCCCCCcccc-cchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhh
Q 011580 340 YQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYN-LNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGF 418 (482)
Q Consensus 340 ~pl~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~l~Ga~~~ 418 (482)
|--.....+|.+++.+.+ .++ + + +|.. ..........+.+......+...|..+.+++.+|+...
T Consensus 300 Flgv~lg~~~~~~~~~~~--~~~----~------~--~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~ 365 (415)
T COG0814 300 FLGVYLGLFEGLADLFKK--SNS----K------P--GRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPII 365 (415)
T ss_pred HhCchhhHHHhhhHHHHh--ccC----c------c--cchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 433333444555544322 010 0 0 1111 11233444556666778888888999999999999999
Q ss_pred hhhHhhhhHHHHHHHhCCCccchhHHHHHHHHHHHHHHHHHH
Q 011580 419 WPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAA 460 (482)
Q Consensus 419 ~~l~~ilP~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~g 460 (482)
..+.++.|...+.|....+..+.+......+.++|+......
T Consensus 366 ~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~ 407 (415)
T COG0814 366 PALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSP 407 (415)
T ss_pred HHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHH
Confidence 999999999888786655443322223444445555444433
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.95 E-value=1.1e-24 Score=215.25 Aligned_cols=356 Identities=13% Similarity=0.089 Sum_probs=252.3
Q ss_pred CccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHH
Q 011580 33 RLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVR 112 (482)
Q Consensus 33 ~~~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~ 112 (482)
+++++++.+++...+.++.||+|+|++|.+-++.|+.++++++++++.+..||+.++.|...+.++ ..++.++++
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~-----g~~~~tma~ 80 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI-----GSSFDTITK 80 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHH
Confidence 456778899999999999999999999999999999999999999999999999999998765432 249999999
Q ss_pred hhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhH
Q 011580 113 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLW 192 (482)
Q Consensus 113 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 192 (482)
+.+||+|+.+..++..+..|+.+++|+...|+.+++.++.... ..++..-.++++++.-.+... ..+...
T Consensus 81 ~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~---------~i~~~~~~llF~~~~~~iv~~-gt~~vd 150 (414)
T PRK10483 81 DLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSL---------NVPARAAGFGFALLVAFVVWL-STKAVS 150 (414)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCC---------CCcHHHHHHHHHHHHHHHHHh-hhhHHH
Confidence 9999999999999999999999999999999999999864110 112233334444444333332 234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCCC
Q 011580 193 WLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPP 272 (482)
Q Consensus 193 ~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~ 272 (482)
+++-+-....+...++.+.....+...+...+.. + .....+-..+.++|++++||+.|.++|++.+.+++..
T Consensus 151 ~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~-----~---~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~ 222 (414)
T PRK10483 151 RMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVA-----E---SNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDP 222 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccc-----c---ccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCH
Confidence 4443333222222222222211221111101100 0 0111122466899999999999999999999998654
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCc------c-ccc---cccccc-CCCchHHHHHHHHHHHHHHHhhh
Q 011580 273 SESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS------P-GNL---LTGFGF-YNPYWLLDIANAAIVIHLVGAYQ 341 (482)
Q Consensus 273 ~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~------~-~~i---~~~~~~-~~~~~~~~~~~~~~~~~~~~s~p 341 (482)
||.+|++..+..+..++|++.=......-+.+. + +|+ +..+.. .+..+...+..++..+.+.+||-
T Consensus 223 ---~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFl 299 (414)
T PRK10483 223 ---KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFL 299 (414)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999985554444333211 1 111 111110 12345667888899999999998
Q ss_pred hcccchHHHHHHHhhhhCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhhh
Q 011580 342 VFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPF-FNDVVGLLGALGFWP 420 (482)
Q Consensus 342 l~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~-~~~v~~l~Ga~~~~~ 420 (482)
-....++|.+.+.+..+ ++ + ..|.....+..+++++.|...|+ |-..+++.|.. ..+
T Consensus 300 Gv~LGL~d~l~D~~k~~--~~----~---------------~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~i 357 (414)
T PRK10483 300 GVTLGLFDYLADLFGFD--DS----A---------------MGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATI 357 (414)
T ss_pred HHHHHHHHHHHHHhCCC--Cc----c---------------ccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHH
Confidence 88888899988876432 21 0 12333455778999999999998 99999999976 778
Q ss_pred hHhhhhHHHHHHHhCC
Q 011580 421 LTVYFPVEMYIAQKKI 436 (482)
Q Consensus 421 l~~ilP~~~~l~~~~~ 436 (482)
+.-++|+++.+|.||+
T Consensus 358 l~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 358 WAAIVPALLARASRKR 373 (414)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8889999999999876
No 10
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.94 E-value=2.6e-24 Score=212.23 Aligned_cols=358 Identities=13% Similarity=0.076 Sum_probs=248.1
Q ss_pred CccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHH
Q 011580 33 RLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVR 112 (482)
Q Consensus 33 ~~~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~ 112 (482)
+.|||.+.+.....+.++.||+|+|++|.+-++.|+.++++++++++.+..||+.++.|+..+.++ ..++.++++
T Consensus 4 ~~~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-----g~~l~tma~ 78 (415)
T PRK09664 4 QAEKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV-----GSSFNTITK 78 (415)
T ss_pred chhhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHH
Confidence 334455788899999999999999999999999999999999999999999999999998775432 249999999
Q ss_pred hhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhH
Q 011580 113 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLW 192 (482)
Q Consensus 113 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 192 (482)
+.+||+|+.+..++..+..|+.+++|+...|+.+.+.++... . ...+...-.++++++.-.+.... .+...
T Consensus 79 ~~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~-~-------~~i~~~~~~llF~~~~~~~v~~g-t~~vd 149 (415)
T PRK09664 79 DLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNL-G-------YHANPRIVGICTAIFVASVLWIS-SLAAS 149 (415)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc-c-------CCCcHHHHHHHHHHHHHHHHHhc-hhHHH
Confidence 999999999999999999999999999999999999986311 0 01222333344444444443333 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHH-HHHHHHHHHHHHhcccchhHhhHhhhCCC
Q 011580 193 WLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIW-RSFQALGDIAFAYSYSIILIEIQDTVKSP 271 (482)
Q Consensus 193 ~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~faf~~~~~i~~i~~~m~~p 271 (482)
+++-+=....+...++.+.....+...+...+.+ +. ......+ ..+.++|++.+||+.|.++|++.+.+++.
T Consensus 150 ~~nr~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~-----~~--~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d 222 (415)
T PRK09664 150 RITSLFLGLKIISFVIVFGSFFFQVDYSILRDAT-----ST--TAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKR 222 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHHHHhcCc-----cc--cccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCcc
Confidence 3332222222221111121111111111110000 00 0000111 36689999999999999999999999866
Q ss_pred CccccchhhHHHHHHHHHHHHHHHH--HhHHhh---------hcCCCcccccccccccCCCchHHHHHHHHHHHHHHHhh
Q 011580 272 PSESKTMKKASLISVGVTTLFYMLC--GCFGYA---------AFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAY 340 (482)
Q Consensus 272 ~~~~~~~~~~~~~s~~~~~i~Y~~~--g~~gy~---------~fG~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 340 (482)
. |+.+|++..+..+..++|... .+.|-. ..|.++...+..-.......+...+.+++..+.+.+||
T Consensus 223 ~---~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSF 299 (415)
T PRK09664 223 K---DKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSF 299 (415)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHH
Confidence 4 788999999999999999753 333311 22222222111111112345777789999999999999
Q ss_pred hhcccchHHHHHHHhhhhCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhh
Q 011580 341 QVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPF-FNDVVGLLGALGFW 419 (482)
Q Consensus 341 pl~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~-~~~v~~l~Ga~~~~ 419 (482)
--....++|.+.+.++. +++ + ..|.....+..++.++.+...|+ |-..++..|.. .+
T Consensus 300 lGv~LGL~D~l~D~~~~--~~~----~---------------~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~ 357 (415)
T PRK09664 300 FGVTLGLFDYLADLFKI--DNS----H---------------GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-AT 357 (415)
T ss_pred HHHHHHHHHHHHHHhCC--CCc----c---------------ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HH
Confidence 88888888998886633 221 0 12334455778999999999998 99999999986 67
Q ss_pred hhHhhhhHHHHHHHhCC
Q 011580 420 PLTVYFPVEMYIAQKKI 436 (482)
Q Consensus 420 ~l~~ilP~~~~l~~~~~ 436 (482)
.+.-++|+++.+|.||+
T Consensus 358 il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 358 IWAVIIPAVLAIKARKK 374 (415)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 88889999999999976
No 11
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.94 E-value=2.4e-24 Score=214.93 Aligned_cols=353 Identities=16% Similarity=0.178 Sum_probs=250.2
Q ss_pred cchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhc
Q 011580 37 TGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLG 116 (482)
Q Consensus 37 ~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G 116 (482)
+.+.++++..+.++.||+|+|+||++.+..|..++++++++++.+++++++++.|...+.++ ..+|.+++++.+|
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-----~~~~~~~a~~~lG 76 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-----GSSLTSMAEKYLG 76 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHhC
Confidence 45789999999999999999999999999999999999999999999999999998775433 2499999999999
Q ss_pred CcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHHH
Q 011580 117 GFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSI 196 (482)
Q Consensus 117 ~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 196 (482)
|+++++..++..+..++.+++|....++.+.+.++.... ...++..-.+++.++.-.+... ..+...+++-
T Consensus 77 ~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~--------~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~ 147 (394)
T PF03222_consen 77 KKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG--------TDLSPWLSSLLFTIIFGGIVYF-GTKAVDRINR 147 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 999999999999999999999999999999999975321 1222333333333332222222 2223333322
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCCCcccc
Q 011580 197 VAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESK 276 (482)
Q Consensus 197 ~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~ 276 (482)
+-+...+......+...+.+ ...+.-.. ......++...+.++|++++||..|.++|++.+.+++.. |
T Consensus 148 ~lv~~~i~~~~~l~~~~~p~----~~~~~L~~-----~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~---~ 215 (394)
T PF03222_consen 148 VLVFGMIISFIILVVYLIPH----WNPSNLLD-----APPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDP---K 215 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhh----cCHHHhhc-----cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccH---H
Confidence 22222222111122111211 11111000 001122344677999999999999999999999999664 7
Q ss_pred chhhHHHHHHHHHHHHHHHHHhHHhhhc-----------CCCccc--ccccccccCCCchHHHHHHHHHHHHHHHhhhhc
Q 011580 277 TMKKASLISVGVTTLFYMLCGCFGYAAF-----------GDLSPG--NLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVF 343 (482)
Q Consensus 277 ~~~~~~~~s~~~~~i~Y~~~g~~gy~~f-----------G~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~ 343 (482)
|.+|++..+..+..++|+..-+..-..- +.+..+ ....+. ....+...+..++..+.+.+||--.
T Consensus 216 k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~i~~~~~~fa~~Ai~TSFlGv 293 (394)
T PF03222_consen 216 KIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANV--SGSPWISILGSIFAFFAIATSFLGV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhh--cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999987644332211 111111 111111 1335667788999999999999888
Q ss_pred ccchHHHHHHHhhhhCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhhhhH
Q 011580 344 CQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPF-FNDVVGLLGALGFWPLT 422 (482)
Q Consensus 344 ~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~-~~~v~~l~Ga~~~~~l~ 422 (482)
...++|.+.+.++. +++ +..|........++++++|...|+ |...+++.| ...+.+.
T Consensus 294 ~lgl~d~l~d~~k~--~~~-------------------~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~ 351 (394)
T PF03222_consen 294 YLGLFDFLADLFKL--KNN-------------------SSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILL 351 (394)
T ss_pred HHHHHHHHHHHHcC--Ccc-------------------ccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHH
Confidence 88889998887633 111 123444556677889999999998 899999999 9999999
Q ss_pred hhhhHHHHHHHhCCCcc
Q 011580 423 VYFPVEMYIAQKKIPKW 439 (482)
Q Consensus 423 ~ilP~~~~l~~~~~~~~ 439 (482)
.++|+++.+|.|++++.
T Consensus 352 ~ilP~~m~~~~r~~~~~ 368 (394)
T PF03222_consen 352 GILPALMVWKARKRKPK 368 (394)
T ss_pred HHHHHHHHHHHHcccCC
Confidence 99999999998876553
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.93 E-value=1.3e-23 Score=208.66 Aligned_cols=348 Identities=13% Similarity=0.136 Sum_probs=247.5
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcCc
Q 011580 39 TLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGF 118 (482)
Q Consensus 39 s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~~ 118 (482)
+.+++.+.+.++.||+|+|+||.+....|++++++++++++.+..|+++++.|+..+.++ ..++.+++++.+||+
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~-----~~~~~~~a~~~LG~~ 78 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA-----DTGLGTLAKRYLGRY 78 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-----CCCHHHHHHHHhChH
Confidence 688999999999999999999999999999999999999999999999999996554321 248999999999999
Q ss_pred ceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHHHHH
Q 011580 119 QVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVA 198 (482)
Q Consensus 119 ~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 198 (482)
++++..++..+..|..+.+|....|+.+.+.++.+..+ +.+.....+++.++.-..... ..+...++.-+=
T Consensus 79 g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~--------~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L 149 (403)
T PRK15132 79 GQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI--------SMSPTAGVLLFTLVAGGVVCV-GTSSVDLFNRFL 149 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC--------CCChHHHHHHHHHHHHHHHhc-cHHHHHHHHHHH
Confidence 99999999999999999999999999998888753211 112233344444332222222 223333332222
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCCCccccch
Q 011580 199 AVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTM 278 (482)
Q Consensus 199 ~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~ 278 (482)
....+...+..+.. ...+...+.-.+. ++ +....+.++|++.+||+.|.++|++.+.+++.. ||.
T Consensus 150 ~~~~ii~~~~~~~~----l~p~~~~~~L~~~-~~-------~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~---~~~ 214 (403)
T PRK15132 150 FSAKIIFLVVMLAL----MMPHIHKVNLLTL-PL-------QQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNI---RKL 214 (403)
T ss_pred HHHHHHHHHHHHHH----HHHhcCHHHHhcC-Cc-------cccHHHHHHHHHHHHhhCCcccHHHHHHhCcCH---HHH
Confidence 22211111111111 1221111110000 00 001367899999999999999999999998664 789
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhhhcCCCc-----cc-----cccccccc-CCCchHHHHHHHHHHHHHHHhhhhcccch
Q 011580 279 KKASLISVGVTTLFYMLCGCFGYAAFGDLS-----PG-----NLLTGFGF-YNPYWLLDIANAAIVIHLVGAYQVFCQPL 347 (482)
Q Consensus 279 ~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~-----~~-----~i~~~~~~-~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 347 (482)
+|++..+..+..++|+..-..+...-+.+. ++ +++..+.. ....|...++.++..+.+.+||--....+
T Consensus 215 ~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl 294 (403)
T PRK15132 215 RWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGL 294 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987666665554331 11 22222210 12357777888999999999998888888
Q ss_pred HHHHHHHhhhhCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhhhhHhhhh
Q 011580 348 FAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPF-FNDVVGLLGALGFWPLTVYFP 426 (482)
Q Consensus 348 ~~~~~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~-~~~v~~l~Ga~~~~~l~~ilP 426 (482)
+|.+.+.+.++ ++ +..|.....+..++++++|...|+ |...+++.|. ..+.+.+++|
T Consensus 295 ~d~l~d~~~~~--~~-------------------~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP 352 (403)
T PRK15132 295 FDYLADLFQRR--NT-------------------VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLP 352 (403)
T ss_pred HHHHHHHHccC--cc-------------------ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 89988876432 10 022455667888999999999998 8899999996 5789999999
Q ss_pred HHHHHHHhCCC
Q 011580 427 VEMYIAQKKIP 437 (482)
Q Consensus 427 ~~~~l~~~~~~ 437 (482)
+++.+|.|+++
T Consensus 353 ~~m~~~~r~~~ 363 (403)
T PRK15132 353 SLLVWQSRKQN 363 (403)
T ss_pred HHHHHHHhhcC
Confidence 99999988754
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.92 E-value=1.6e-23 Score=210.71 Aligned_cols=346 Identities=14% Similarity=0.087 Sum_probs=249.8
Q ss_pred HHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcCcceeeh
Q 011580 44 SAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKIC 123 (482)
Q Consensus 44 ~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~i~ 123 (482)
+..++++++|+|++++|.++++.|..++++.+++.+.++.+++..+.|...+.+. . .++.+++++.+||++++++
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~---~--~~~~~~~~~~~G~~~g~~~ 77 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG---G--ASFNTIAKDLLGKTGNIIA 77 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---C--CCHHHHHHHHhCHHHHHHH
Confidence 4456799999999999999999999999999999999999999999998776432 1 2899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHHHHHHHHHH
Q 011580 124 GLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSF 203 (482)
Q Consensus 124 ~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 203 (482)
.+..++.++..+.+|....++++..+++..... ..+.....+++.+++. ....+..+...+++.+.+...+
T Consensus 78 ~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~v~~-~l~~~G~~~~~~v~~i~~~~~l 148 (381)
T TIGR00837 78 GLSLLFVLYILTYAYISGGGSILSRLIGEYFGF--------PWSARAIVLIFTVLFG-SFVWLSTSAVDRITRVLIFGKI 148 (381)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--------CccHHHHHHHHHHHHH-HHHHhchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999888632110 1122223333333333 3445567777777777766665
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCCCccccchhhHHH
Q 011580 204 TYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASL 283 (482)
Q Consensus 204 ~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~ 283 (482)
...++.+...+.+... +...+ . + . ....+.+...+++...++|.+|.+++++.+|+++++ ||.+|++.
T Consensus 149 ~~l~~~ii~~~~~~~~----~~~~~-~--~-~-~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~---k~i~raii 216 (381)
T TIGR00837 149 IAFALVFSGLLPHVKG----DLLLD-V--A-L-DTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNV---KKVKKSIL 216 (381)
T ss_pred HHHHHHHHHHHhhccH----HHHhc-C--c-c-ccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCH---HHHHHHHH
Confidence 5333332222222111 10000 0 0 0 011233677889999999999999999999998664 89999999
Q ss_pred HHHHHHHHHHHHHHhHHhhhcCCCcccccc----------ccccc-CCCchHHHHHHHHHHHHHHHhhhhcccchHHHHH
Q 011580 284 ISVGVTTLFYMLCGCFGYAAFGDLSPGNLL----------TGFGF-YNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIE 352 (482)
Q Consensus 284 ~s~~~~~i~Y~~~g~~gy~~fG~~~~~~i~----------~~~~~-~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~ 352 (482)
.+..+++++|+++........+.+.-.+.. ..+.. -...|...++.++..+.+++++.-...+++|.+.
T Consensus 217 ~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~ 296 (381)
T TIGR00837 217 IGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLA 296 (381)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998877776666543211111 11110 1234566788889999999999988888888877
Q ss_pred HHhhhhCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccchH-HHHHHhhhhhhhhhHhhhhHHHHH
Q 011580 353 KQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFN-DVVGLLGALGFWPLTVYFPVEMYI 431 (482)
Q Consensus 353 ~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~-~v~~l~Ga~~~~~l~~ilP~~~~l 431 (482)
+.+.+. + ++ ..|.....+..++..++|.+.|+.. ..++..| +..+++.+++|+++++
T Consensus 297 ~~~~~~--~----~~---------------~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~ 354 (381)
T TIGR00837 297 DLFKFD--D----SK---------------KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAW 354 (381)
T ss_pred HHhCCC--c----cc---------------CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 755331 1 00 1134456677788999999999855 9999999 8899999999999999
Q ss_pred HHhCCC
Q 011580 432 AQKKIP 437 (482)
Q Consensus 432 ~~~~~~ 437 (482)
|.||++
T Consensus 355 ~~r~~~ 360 (381)
T TIGR00837 355 KARKKF 360 (381)
T ss_pred HHHhcC
Confidence 988753
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.88 E-value=8.4e-20 Score=180.37 Aligned_cols=368 Identities=11% Similarity=0.042 Sum_probs=245.9
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcCcc
Q 011580 40 LWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQ 119 (482)
Q Consensus 40 ~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~ 119 (482)
.......+.++.||+|+|+||-.....|.++.++++++++.+++++++.+.|.....++ . ..++.+++++.+||++
T Consensus 21 d~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~-~---~~~i~~v~~~~lG~~g 96 (443)
T PRK13629 21 DTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN-P---SGNITETVEEHFGKTG 96 (443)
T ss_pred cchHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-C---CCCHHHHHHHHcChhH
Confidence 34455899999999999999999999999999999999999999999999997664322 1 2399999999999999
Q ss_pred eeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHHHHHH
Q 011580 120 VKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAA 199 (482)
Q Consensus 120 ~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 199 (482)
+.+..++..+..+..+.+|.....+.+...+..+. +. . ..++....+++.+++....... -+.+-+++-.=.
T Consensus 97 ~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql-~~----~--~~~r~l~slifv~~l~~iv~~G-~~~v~kv~~~Lv 168 (443)
T PRK13629 97 GVVITFLYFFAICPLLWIYGVTITNTFMTFWENQL-GF----A--PLNRGFVALFLLLLMAFVIWFG-KDLMVKVMSYLV 168 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-Cc----C--CccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHH
Confidence 99999999999999999999888888877654321 10 0 1233333334433333333222 233333332222
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCC-------C
Q 011580 200 VMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSP-------P 272 (482)
Q Consensus 200 ~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-------~ 272 (482)
...+...+......+.+.-.+...+.+.+.. +........-..+.++|++++||+.|+.+|++...+|+. .
T Consensus 169 ~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~--~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~ 246 (443)
T PRK13629 169 WPFIASLVLISLSLIPYWNSAVIDQVDLGSL--SLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRD 246 (443)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHhcCccccc--cccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccc
Confidence 2222111112222222211111111000000 000000011246688999999999999999998884322 2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCc-----cccc--ccc----cccC-CC-----chHHHHHHHHHHHH
Q 011580 273 SESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS-----PGNL--LTG----FGFY-NP-----YWLLDIANAAIVIH 335 (482)
Q Consensus 273 ~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~-----~~~i--~~~----~~~~-~~-----~~~~~~~~~~~~~~ 335 (482)
...||.+|++..+..+..++|+.+-+.+...-+.+. +.|+ +.. ++.. .. .+...+..+...+.
T Consensus 247 ~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~A 326 (443)
T PRK13629 247 FTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVA 326 (443)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHH
Confidence 113889999999999999999988888877666542 1122 111 2100 01 34566777888889
Q ss_pred HHHhhhhcccchHHHHHHHhhh-h-CCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHh
Q 011580 336 LVGAYQVFCQPLFAFIEKQAHQ-R-FPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLL 413 (482)
Q Consensus 336 ~~~s~pl~~~p~~~~~~~~~~~-~-~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~l~ 413 (482)
+.+||--....++|.++.++.+ . .+++ + +.+.+..+.....++.+.+++++..-|++-.++.-+
T Consensus 327 I~TSFlGv~LGl~E~l~gl~~~~~~~~~~----~----------~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~ 392 (443)
T PRK13629 327 IFKSFFGHYLGTLEGLNGLILKFGYKGDK----T----------KVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAM 392 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc----c----------ccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHh
Confidence 9999988888999999988743 1 1111 0 112235566777788899999999999999999988
Q ss_pred hhhhhhhhHhhhhHHHHHHHhC
Q 011580 414 GALGFWPLTVYFPVEMYIAQKK 435 (482)
Q Consensus 414 Ga~~~~~l~~ilP~~~~l~~~~ 435 (482)
|+-..+++.|++|...-+|...
T Consensus 393 ~gPiia~il~l~P~y~i~kvp~ 414 (443)
T PRK13629 393 GAPIIASLLCLLPMYAIRKAPS 414 (443)
T ss_pred hhHHHHHHHHHHHHHHHHccHH
Confidence 8888999999999998888643
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.86 E-value=4.6e-19 Score=176.66 Aligned_cols=364 Identities=11% Similarity=0.031 Sum_probs=252.0
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcCc
Q 011580 39 TLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGF 118 (482)
Q Consensus 39 s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~~ 118 (482)
......+.+.++++|+|+|++|....+.||+..++..++...+++++.+++.|.....+ .++ .++.|++++.|||+
T Consensus 4 ~d~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~-~p~---~~i~~~~~~~fGk~ 79 (397)
T TIGR00814 4 TDTGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSK-NPC---EDITEVVEEHFGKN 79 (397)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCC---CCHHHHHHHHcCHH
Confidence 34567889999999999999999999999999999999999999999999999744322 112 39999999999999
Q ss_pred ceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHHHHH
Q 011580 119 QVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVA 198 (482)
Q Consensus 119 ~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 198 (482)
++.+..+..++..+..+.+|....++.+.+.+...... +.+.++...+..++++........+.+.+++.+-
T Consensus 80 ~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~--------~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il 151 (397)
T TIGR00814 80 WGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGT--------APPLRGLLSLALILILVAIMSFGEKLLFKIMGPL 151 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 99999999999999999999999999988887642111 1111222222222232333444666666666555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhH----hhhCCCCcc
Q 011580 199 AVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ----DTVKSPPSE 274 (482)
Q Consensus 199 ~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~----~~m~~p~~~ 274 (482)
....+...+......+.+...+...+ .+ . ....+.+...+++..++||.+|+.+++.. +|.+||...
T Consensus 152 ~~~~ii~l~~l~~~lip~~~~~~L~~--~p------~-~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~ 222 (397)
T TIGR00814 152 VFPLVLILVLLSLYLIPHWNGANLTT--FP------S-FNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFA 222 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHhc--CC------c-ccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchH
Confidence 54443322222222222211010000 00 0 01123467899999999999999999998 344434322
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCcc-----ccc--ccccc-cCCCchHHHHHHHHHHHHHHHhhhhcccc
Q 011580 275 SKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSP-----GNL--LTGFG-FYNPYWLLDIANAAIVIHLVGAYQVFCQP 346 (482)
Q Consensus 275 ~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~-----~~i--~~~~~-~~~~~~~~~~~~~~~~~~~~~s~pl~~~p 346 (482)
.||.+|++..+..+..++|+..-+.+....+.+.- .|+ +..+. ..+..+...+..+...+.+.+||--+...
T Consensus 223 ~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg 302 (397)
T TIGR00814 223 ERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLG 302 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37899999999999999999988888887775431 111 11110 01223556677788888999999989999
Q ss_pred hHHHHHHHhhhhCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhHhhhh
Q 011580 347 LFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFP 426 (482)
Q Consensus 347 ~~~~~~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP 426 (482)
++|.+.+.+.+.... ++ ++.+++........+..+.++.++..-|++-.++.-+|+-..+++.|++|
T Consensus 303 ~~e~l~~l~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p 369 (397)
T TIGR00814 303 AREGLNGIVLNSLKM-----KG--------KKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMP 369 (397)
T ss_pred HHHHHHHHHHHHhcc-----cc--------cccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHH
Confidence 999999987332111 00 01122344556677788899999999999999999888888899999999
Q ss_pred HHHHHHHhCC
Q 011580 427 VEMYIAQKKI 436 (482)
Q Consensus 427 ~~~~l~~~~~ 436 (482)
...-+|...-
T Consensus 370 ~~~~~~v~~l 379 (397)
T TIGR00814 370 MYAIYKVPAL 379 (397)
T ss_pred HHHHHccHHH
Confidence 9998886443
No 16
>PRK15049 L-asparagine permease; Provisional
Probab=99.73 E-value=1.6e-14 Score=149.78 Aligned_cols=369 Identities=14% Similarity=0.123 Sum_probs=202.5
Q ss_pred CccccchHHHHHHHHHhhhhhhhhhHHHH-HHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHH
Q 011580 33 RLKRTGTLWTASAHIITAVIGSGVLSLAW-ATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAV 111 (482)
Q Consensus 33 ~~~~~~s~~~a~~~l~~~~iG~GiLslP~-af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~ 111 (482)
+.+|+.+.++.....++++||+|++..|. ++++.|- .+++..++.+++....+..+.|.....+ ..| ...+.+
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P-~aG----g~y~y~ 98 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRP-SSG----SFVSYA 98 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCC----CHHHHH
Confidence 46788899999999999999999988777 6667776 5678888899999999999998766543 444 556667
Q ss_pred HhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhH-HHHHHHHHhhcCCCcch
Q 011580 112 RSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMI-AFGIVEIVLSQIPDFDQ 190 (482)
Q Consensus 112 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~~l~~ 190 (482)
++.+|++.++++.+..++.............+.++... +. +. .. ..|.. +..++++-+...+..|.
T Consensus 99 ~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~--~~--------~~--~~~~~~~~~~~l~~~iN~~gvk~ 165 (499)
T PRK15049 99 REFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GA--FG--------GV--PQWVFALAALTIVGTMNMIGVKW 165 (499)
T ss_pred HHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc--CC--------CC--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999888765544444443344333211 10 00 01 12222 22222222333344455
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccc-c---ccccchhhHHHHHHHHHHHHHHhcccchhHhhHh
Q 011580 191 LWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGIS-I---GTVSETQKIWRSFQALGDIAFAYSYSIILIEIQD 266 (482)
Q Consensus 191 l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 266 (482)
...+........+...+..++..+.......+.+....+.. + +... +..+...+.++....|+|.|.+.+....+
T Consensus 166 ~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~-p~g~~~~~~~~~~~~faf~G~e~i~~~ae 244 (499)
T PRK15049 166 FAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFF-PHGLLPALVLIQGVVFAFASIEMVGTAAG 244 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 54444443332222222221122221111111111111110 0 0011 11233455667789999999999999999
Q ss_pred hhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCccc----ccccccccCCCchHHHHHHHHHHHHHHHhhhh
Q 011580 267 TVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPG----NLLTGFGFYNPYWLLDIANAAIVIHLVGAYQV 342 (482)
Q Consensus 267 ~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl 342 (482)
|+|||+ |+.+|++..++..+.++|+..........+.+..+ ....-+......+...+.++...+..+.+.--
T Consensus 245 E~knP~---r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns 321 (499)
T PRK15049 245 ECKDPQ---TMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNS 321 (499)
T ss_pred HhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 999997 78999999999999999998766555444432111 11110100111233445555555555555433
Q ss_pred cccchHHHHHHHhhh-hCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccc--hHHHHHHhhhhhhh
Q 011580 343 FCQPLFAFIEKQAHQ-RFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPF--FNDVVGLLGALGFW 419 (482)
Q Consensus 343 ~~~p~~~~~~~~~~~-~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~--~~~v~~l~Ga~~~~ 419 (482)
.+...-+.+...-.. ..| ++..+.++.+.| ..-+.+..++.++..++....|+ ++.++++.+ .+.
T Consensus 322 ~~~~~sR~l~a~Ardg~lP--~~f~kv~k~~~P--------~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~ 389 (499)
T PRK15049 322 GLYCTGRILRSMAMGGSAP--SFMAKMSRQHVP--------YAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGI 389 (499)
T ss_pred HHHHHHHHHHHHHhcCCcC--HHHHHhCCCCCC--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHH
Confidence 333333333322211 112 111221111233 23333333333333333333442 555556554 456
Q ss_pred hhHhhhhHHHHHHHhCC
Q 011580 420 PLTVYFPVEMYIAQKKI 436 (482)
Q Consensus 420 ~l~~ilP~~~~l~~~~~ 436 (482)
.+.|++|++.+++.||+
T Consensus 390 li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 390 IASWAFIIVCQMRLRKA 406 (499)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88999999999887753
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=99.72 E-value=3.2e-14 Score=145.93 Aligned_cols=242 Identities=10% Similarity=-0.011 Sum_probs=157.1
Q ss_pred ccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHh
Q 011580 34 LKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRS 113 (482)
Q Consensus 34 ~~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~ 113 (482)
++|+.+.++++...+++++|+|++.+|..+++.|. .+++..++.+++.......+.|...+ .|+.|. ....+++
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~-~P~~GG----~y~y~~~ 77 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMF-SRKSGG----MGGYAEY 77 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhh-CCCCCc----hHHHHHH
Confidence 46778999999999999999999999999988887 57788888888888888888886654 334453 3445578
Q ss_pred hhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHH-HHHHHhhcCCCcchhH
Q 011580 114 NLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFG-IVEIVLSQIPDFDQLW 192 (482)
Q Consensus 114 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~~~l~~l~ 192 (482)
.+||..+++..+..++.......++.....+++..+++. . ......+.+... +.++-....+..+...
T Consensus 78 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~--------~---~~~~~~~~~~~~~l~~~~~ln~~g~~~~~ 146 (438)
T PRK10655 78 AFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGA--------T---LSPVQICLATIGVLWLCTVANFGGARITG 146 (438)
T ss_pred HcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------c---cchHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 899999999999887776665555555555666555431 0 000011222111 1222223444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCCC
Q 011580 193 WLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPP 272 (482)
Q Consensus 193 ~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~ 272 (482)
.+..+.....+...++.+....... +.... .+. +.+ .....+.++..++....|+|.|.+.+..+.+|+|||+
T Consensus 147 ~i~~i~~~~~l~~l~~~~i~~~~~~-~~~~~---~~~--~~~-~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~ 219 (438)
T PRK10655 147 QISSVTVWGVIIPVVGLSIIGWFWF-SPSLY---VAA--WNP-HHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPE 219 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-Ccccc---cCC--cCc-cCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc
Confidence 5555444443332222222222221 11110 111 110 0111123566778899999999999999999999997
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHhHHhh
Q 011580 273 SESKTMKKASLISVGVTTLFYMLCGCFGYA 302 (482)
Q Consensus 273 ~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~ 302 (482)
|+.+|++..+..++.++|++.......
T Consensus 220 ---r~iPrAi~~~~~~~~~~Y~l~~~~~~~ 246 (438)
T PRK10655 220 ---RNVPIAVLGGTLGAAVIYIVSTNVIAG 246 (438)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999987655443
No 18
>PRK10249 phenylalanine transporter; Provisional
Probab=99.71 E-value=3.6e-14 Score=146.02 Aligned_cols=370 Identities=14% Similarity=0.082 Sum_probs=204.3
Q ss_pred CCCCCccccchHHHHHHHHHhhhhhhhhhHHHHHH-HhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccH
Q 011580 29 DDDGRLKRTGTLWTASAHIITAVIGSGVLSLAWAT-AQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTY 107 (482)
Q Consensus 29 ~~~~~~~~~~s~~~a~~~l~~~~iG~GiLslP~af-~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y 107 (482)
+++.+.+|+.+.++.....++++||+|++..|-.. ++.|. ..++..++.+++....+.-+.|...+.+ ..| ..
T Consensus 14 ~~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P-~~G----g~ 87 (458)
T PRK10249 14 NQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEP-VSG----SF 87 (458)
T ss_pred CCchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCC----CH
Confidence 33346778889999999999999999998877655 45565 4778888999999999999999776543 344 55
Q ss_pred HHHHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhH-HHHHHHHHhhcCC
Q 011580 108 VDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMI-AFGIVEIVLSQIP 186 (482)
Q Consensus 108 ~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~ 186 (482)
.+.+++.+|+..++++.+..++.......+.....+.++..+.+. . ..+.. +..++++-....+
T Consensus 88 ~~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~-------------~--~~~~~~~~~~~l~~~lN~~ 152 (458)
T PRK10249 88 AHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD-------------V--PTWIWAAAFFIIINAVNLV 152 (458)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-------------C--cHHHHHHHHHHHHHHHHHh
Confidence 667889999999999999988877666666666666665543321 1 11221 2222222233444
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CCCCcccccccc-ccchhhHHHHHHHHHHHHHHhcccchhHhh
Q 011580 187 DFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGK-FRGSLTGISIGT-VSETQKIWRSFQALGDIAFAYSYSIILIEI 264 (482)
Q Consensus 187 ~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~i~~i 264 (482)
..+..+.+........+...+..+...+.......+ .+...+.. +++ ...+..+.++..++....|+|.|.+.+...
T Consensus 153 gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~ 231 (458)
T PRK10249 153 NVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNL-WRYGGFFATGWNGLILSLAVIMFSFGGLELIGIT 231 (458)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhc-cCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 555555444333333222111122121211111111 10011110 110 000123346678899999999999999999
Q ss_pred HhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCccc----ccccccccCCCchHHHHHHHHHHHHHHHhh
Q 011580 265 QDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPG----NLLTGFGFYNPYWLLDIANAAIVIHLVGAY 340 (482)
Q Consensus 265 ~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 340 (482)
.+|+|||+ |+.+|++..++....++|++.........+++... ....-+......+...+.+++..+..+.+.
T Consensus 232 a~E~~~P~---k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 308 (458)
T PRK10249 232 AAEARDPE---KSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVY 308 (458)
T ss_pred HHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 99999997 88999999999999999987555444443332111 111000000112334444444444444444
Q ss_pred hhcccchHHHHHHHhhh-hCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccc--hHHHHHHhhhhh
Q 011580 341 QVFCQPLFAFIEKQAHQ-RFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPF--FNDVVGLLGALG 417 (482)
Q Consensus 341 pl~~~p~~~~~~~~~~~-~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~--~~~v~~l~Ga~~ 417 (482)
.-.+...-+.+...-.+ ..|. +..+.++.+.| ...+.+...+..+..++....|+ ++.+.++.+ .
T Consensus 309 ~~~~~~~sR~l~a~ardg~lP~--~~~kv~~~~~P--------~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~--~ 376 (458)
T PRK10249 309 NSGVYSNSRMLFGLSVQGNAPK--FLTRVSRRGVP--------INSLMLSGAITSLVVLINYLLPQKAFGLLMALVV--A 376 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCcCH--HHHHhCCCCCC--------HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH--H
Confidence 32222222222221111 1121 11111111222 33334444443333333333342 444544443 2
Q ss_pred hhhhHhhhhHHHHHHHhC
Q 011580 418 FWPLTVYFPVEMYIAQKK 435 (482)
Q Consensus 418 ~~~l~~ilP~~~~l~~~~ 435 (482)
...+.|++|++.+++.++
T Consensus 377 ~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 377 TLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457899999999998774
No 19
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.70 E-value=8.4e-14 Score=142.46 Aligned_cols=245 Identities=11% Similarity=0.039 Sum_probs=157.3
Q ss_pred CccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHH
Q 011580 33 RLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVR 112 (482)
Q Consensus 33 ~~~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~ 112 (482)
+++|+.+.++.+...++++||+|++.+|...++.|-. .+...++.++.....+..+.|...+.+ +.|. .+. .++
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P-~~GG-~y~---y~~ 75 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNP-QQGG-PIA---YAG 75 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCC-CCCC-hhH---HHH
Confidence 5678899999999999999999999999999988764 667777778888888888888666543 4442 233 446
Q ss_pred hhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhH-HHHHHHHHhhcCCCcchh
Q 011580 113 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMI-AFGIVEIVLSQIPDFDQL 191 (482)
Q Consensus 113 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l 191 (482)
+ +||..++++.+..+...+....++.....+++..+++.. . . .. ..+.. +..+.++-+...+..|..
T Consensus 76 ~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~-----~--~--~~--~~~~~~~~i~~~~~~ln~~gvk~~ 143 (435)
T PRK10435 76 E-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL-----N--D--PI--PAGIACIAIVWVFTFVNMLGGTWV 143 (435)
T ss_pred H-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----C--C--hH--HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 7 799999999998887666666666666667776554321 0 0 00 01111 111112223344455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCC
Q 011580 192 WWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSP 271 (482)
Q Consensus 192 ~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 271 (482)
..+..+..+..+...+..+.....+. + +... .+ ++.+ ..+..+.++..++....|+|.|.+.+....+|+|||
T Consensus 144 ~~i~~i~~~~~li~~~~~~i~g~~~~-~--~~~~-~~--~~~~-~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP 216 (435)
T PRK10435 144 SRLTTIGLVLVLIPVVGTAIVGWHWF-D--AATY-AA--NWNT-SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNP 216 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-C--HHhh-cc--cccC-CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCc
Confidence 55554444433321111111111111 1 0000 00 1110 111235577888999999999999999999999999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHhHHhhhcC
Q 011580 272 PSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG 305 (482)
Q Consensus 272 ~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG 305 (482)
+ |+++|++..+..++.++|++..+.......
T Consensus 217 ~---r~iPrAi~~~~~iv~ilYil~~~~~~~~~p 247 (435)
T PRK10435 217 K---RTVPLATMLGTGLAGIIYIAATQVISGMFP 247 (435)
T ss_pred c---ccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7 799999999999999999988876654443
No 20
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.69 E-value=1.5e-13 Score=141.16 Aligned_cols=247 Identities=15% Similarity=0.063 Sum_probs=157.0
Q ss_pred CCCccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHH
Q 011580 31 DGRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDA 110 (482)
Q Consensus 31 ~~~~~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l 110 (482)
+.+++|+.+.++++...+++++|+|++.+|....+.|. ..+...++.++.....+..+.|.....+ +.|. .+.|
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P-~aGG-~y~~--- 76 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDP-SPGG-SYAY--- 76 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCCC-hhHH---
Confidence 34567889999999999999999999999999988775 3556677777777777777788665543 4453 2344
Q ss_pred HHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHH--HHHHHHHhhcCCCc
Q 011580 111 VRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIA--FGIVEIVLSQIPDF 188 (482)
Q Consensus 111 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i--~~~i~~pl~~~~~l 188 (482)
+++.+||...+++.+..++.......+......++...+++.. . ......++ ..++++-....+..
T Consensus 77 ~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~ln~~gv 144 (445)
T PRK10644 77 ARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-----------K-DPLVLTITCVVVLWIFVLLNIVGP 144 (445)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------C-CcHHHHHHHHHHHHHHHHHHHhch
Confidence 7888999999999988887765555555555555555444310 0 01111111 11112223344555
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhh
Q 011580 189 DQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTV 268 (482)
Q Consensus 189 ~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m 268 (482)
|...++..+.....+...++.+...+... +..... +. +. ......+..+..++....|+|.|.+......+|+
T Consensus 145 k~~~~i~~i~~~~~~i~l~~~~~~~~~~~-~~~~~~---~~--~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~ 217 (445)
T PRK10644 145 KMITRVQAVATVLALIPIVGIAVFGWFWF-RGETYM---AA--WN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV 217 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-Cchhcc---CC--cc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 66666655555444332222222211111 110000 11 10 0111123355577889999999999999999999
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcC
Q 011580 269 KSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG 305 (482)
Q Consensus 269 ~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG 305 (482)
|||+ |+.+|++..+..+++++|++..+......+
T Consensus 218 k~P~---r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~ 251 (445)
T PRK10644 218 KNPK---RNVPIATIGGVLIAAVCYVLSSTAIMGMIP 251 (445)
T ss_pred hCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9997 899999999999999999988876544433
No 21
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.68 E-value=1.6e-13 Score=141.88 Aligned_cols=251 Identities=14% Similarity=0.055 Sum_probs=154.0
Q ss_pred CCccccchHHHHHHHHHhhhhhhhhhHHHHHH-HhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHH
Q 011580 32 GRLKRTGTLWTASAHIITAVIGSGVLSLAWAT-AQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDA 110 (482)
Q Consensus 32 ~~~~~~~s~~~a~~~l~~~~iG~GiLslP~af-~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l 110 (482)
.+.+|+.+.++.....++++||+|++..|... +.+|-...++..++.+++.......+.|...+.+ +.| .+...
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P-~aG----G~y~y 84 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMP-ETG----AFHVY 84 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCC----CHHHH
Confidence 45788899999999999999999998777665 5667544567788888888888888888766543 444 44567
Q ss_pred HHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcch
Q 011580 111 VRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQ 190 (482)
Q Consensus 111 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 190 (482)
+++.+|+..++++.+..++.....+.......+..+..+.+ ......+.++.. +++-+...+..|.
T Consensus 85 ~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p-------------~~~~~~~~~~~~-~~~~~in~~gvk~ 150 (471)
T PRK11387 85 AARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFP-------------QVPVWPWCLLFC-ALIFGLNVVSTRF 150 (471)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------cCcHHHHHHHHH-HHHHHHHHHhHHH
Confidence 78889999999999988877666555444444444332221 011111122222 2222333344555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-C-CCccccc-c--ccccchhhHHHHHHHHHHHHHHhcccchhHhhH
Q 011580 191 LWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKF-R-GSLTGIS-I--GTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 265 (482)
Q Consensus 191 l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~-~-~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~ 265 (482)
...+........+...+..+...+.......+. + ...+... + ++.. +....++..++....|+|.|.+.+....
T Consensus 151 ~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~faf~G~e~~~~~a 229 (471)
T PRK11387 151 FAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWF-PHGGLPILMTMVAVNFAFSGTELIGIAA 229 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCC-cccHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 444443333322222211121111111110000 0 0000000 0 0010 1123456777888999999999999999
Q ss_pred hhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcC
Q 011580 266 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG 305 (482)
Q Consensus 266 ~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG 305 (482)
+|+|||+ |+++|++..+..++.++|++..+......+
T Consensus 230 ~E~knP~---r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 230 GETENPA---KVIPVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 9999997 899999999999999999988765544444
No 22
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.67 E-value=2.2e-13 Score=140.20 Aligned_cols=250 Identities=14% Similarity=0.080 Sum_probs=163.3
Q ss_pred CCCccccchHHHHHHHHHhhhhhhhhhHHH-HHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHH
Q 011580 31 DGRLKRTGTLWTASAHIITAVIGSGVLSLA-WATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVD 109 (482)
Q Consensus 31 ~~~~~~~~s~~~a~~~l~~~~iG~GiLslP-~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~ 109 (482)
+.+.+|+.+.++.....++++||+|++.+| .+.++.|. .+++..++.+++....+..+.|...+.+ ..| ...+
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P-~~G----g~~~ 80 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANP-DTG----SFST 80 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC----CHHH
Confidence 335788889999999999999999999999 66778886 4778888899999988888988766543 334 4566
Q ss_pred HHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHH-HHHHHHHhhcCCCc
Q 011580 110 AVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIA-FGIVEIVLSQIPDF 188 (482)
Q Consensus 110 l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i-~~~i~~pl~~~~~l 188 (482)
.+++.+||...+++.+..++.....+.+.....+.++..+++. . ..|... ..+++.-+...+..
T Consensus 81 ~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~--~~~~~~~~~~~~~~~~n~~gv 145 (452)
T TIGR01773 81 YADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-------------I--PLWLFSLILTIVLTLTNLYSV 145 (452)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------C--cHHHHHHHHHHHHHHHHHHhc
Confidence 7889999999999999998887777777777777766654431 1 122222 22222223334445
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccc-ccccc--cchhhHHHHHHHHHHHHHHhcccchhHhhH
Q 011580 189 DQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGI-SIGTV--SETQKIWRSFQALGDIAFAYSYSIILIEIQ 265 (482)
Q Consensus 189 ~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~ 265 (482)
+....+.....+..+...+..+...+.......+.. +..+. ++.+. ..+..+.++..++....|+|.|.+.+....
T Consensus 146 ~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a 224 (452)
T TIGR01773 146 KSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGS-EVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAA 224 (452)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHH
Confidence 555555544443333322222222111111111110 00000 00000 001223467789999999999999999999
Q ss_pred hhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcC
Q 011580 266 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG 305 (482)
Q Consensus 266 ~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG 305 (482)
+|+|||+ |+.+|++..+.....++|++.........+
T Consensus 225 ~E~k~P~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p 261 (452)
T TIGR01773 225 AESSNPI---KSITRATNSVIWRIIVFYLGSIFIVVALLP 261 (452)
T ss_pred HhhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHeeEeC
Confidence 9999997 799999998888899999986554444333
No 23
>PRK10746 putative transport protein YifK; Provisional
Probab=99.66 E-value=4.7e-13 Score=137.69 Aligned_cols=371 Identities=11% Similarity=0.055 Sum_probs=207.9
Q ss_pred CccccchHHHHHHHHHhhhhhhhhhHHHH-HHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHH
Q 011580 33 RLKRTGTLWTASAHIITAVIGSGVLSLAW-ATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAV 111 (482)
Q Consensus 33 ~~~~~~s~~~a~~~l~~~~iG~GiLslP~-af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~ 111 (482)
+.+|+.+.++..+..++++||+|++..|. +.+.+|. ..++..++.+++....+..+.|..... |..| ++.+.+
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~-P~sG----g~~~y~ 80 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLE-PVTG----SFAVYA 80 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC----CHHHHH
Confidence 56788899999999999999999987655 4556676 466778888888888888888866553 3444 667788
Q ss_pred HhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchh
Q 011580 112 RSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQL 191 (482)
Q Consensus 112 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 191 (482)
++.+||..++++.+..++.....+.+.....+.++..+++. .+...+..+. ++++-....+..+..
T Consensus 81 ~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~-------------~~~~~~~~~~-~~~~~~lN~~gv~~~ 146 (461)
T PRK10746 81 HRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE-------------MAQWIPALIA-VALVALANLAAVRLY 146 (461)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------------CchHHHHHHH-HHHHHHHHHHhHHHH
Confidence 99999999999999999887777777777777776654431 1111222222 222222333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccc-ccccc--cchhhHHHHHHHHHHHHHHhcccchhHhhHhhh
Q 011580 192 WWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGI-SIGTV--SETQKIWRSFQALGDIAFAYSYSIILIEIQDTV 268 (482)
Q Consensus 192 ~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m 268 (482)
..+........+...+..+...+.........+.+..+. ++.+. ..+..+.++..++....|+|.|.+.+....+|+
T Consensus 147 ~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~ 226 (461)
T PRK10746 147 GEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA 226 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 443333222222211111111111100000000000011 01100 011224467789999999999999999999999
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCcccc----cccccccCCCchHHHHHHHHHHHHHHHhhhhcc
Q 011580 269 KSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGN----LLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFC 344 (482)
Q Consensus 269 ~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~~ 344 (482)
|||+ |+++|++..+.....++|++..+........+..+. ....+..........+.++...+....+.--.+
T Consensus 227 knP~---k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~ 303 (461)
T PRK10746 227 KNPQ---VTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGM 303 (461)
T ss_pred cChh---hHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 899999999999999999986555544444332111 100000001122333455555555554443333
Q ss_pred cchHHHHHHHhhh-hCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhh--hhhh
Q 011580 345 QPLFAFIEKQAHQ-RFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALG--FWPL 421 (482)
Q Consensus 345 ~p~~~~~~~~~~~-~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~l~Ga~~--~~~l 421 (482)
...-+.+...-+. ..|. +..+.++.+.| ...+.......+.+..+....|+-+.+++.+-+++ ...+
T Consensus 304 ~~~sR~l~~~a~~g~lP~--~~~~~~~~g~P--------~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i 373 (461)
T PRK10746 304 YSCGRMLYALAKNRQLPA--AMAKVSRHGVP--------VAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMV 373 (461)
T ss_pred HHHHHHHHHHHhCCCcCH--HHHHhCCCCCc--------HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 3333333332211 1121 11221111233 23333333333444445555676666666554332 3578
Q ss_pred HhhhhHHHHHHHhCC
Q 011580 422 TVYFPVEMYIAQKKI 436 (482)
Q Consensus 422 ~~ilP~~~~l~~~~~ 436 (482)
.|+++++.+++.||+
T Consensus 374 ~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 374 PWFVILISQLRFRRA 388 (461)
T ss_pred HHHHHHHHHHHHHHh
Confidence 899999999988764
No 24
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.66 E-value=4.4e-13 Score=138.41 Aligned_cols=247 Identities=13% Similarity=0.064 Sum_probs=154.9
Q ss_pred CccccchHHHHHHHHHhhhhhhhhhHHHH-HHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHH
Q 011580 33 RLKRTGTLWTASAHIITAVIGSGVLSLAW-ATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAV 111 (482)
Q Consensus 33 ~~~~~~s~~~a~~~l~~~~iG~GiLslP~-af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~ 111 (482)
+.+|+.+.++.....++++||+|++..|. ++++.|. ..+...++.+++....+..+.|...... .. .++.+.+
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~-~~----~~~~~ya 90 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNL-EY----KSFSDFA 90 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC----CcHHHHH
Confidence 47888999999999999999999988655 7777777 4566777888888777777777554211 11 2566788
Q ss_pred HhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchh
Q 011580 112 RSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQL 191 (482)
Q Consensus 112 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 191 (482)
++.+||..++++.+..++.......+.....+.++..+++. .. .+...+..++++-+...+..+..
T Consensus 91 ~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~-------------~~-~~~~~~~~~~~~~~iN~~g~~~~ 156 (469)
T PRK11049 91 SDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD-------------LS-DWVASLAVVLLLLSLNLATVKMF 156 (469)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------Cc-HHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999998877655555566666665544321 11 11111222222223344455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CCCCcccc-c-ccc-ccchhhHHHHHHHHHHHHHHhcccchhHhhHhh
Q 011580 192 WWLSIVAAVMSFTYSTIGLGLGIAKVAETGK-FRGSLTGI-S-IGT-VSETQKIWRSFQALGDIAFAYSYSIILIEIQDT 267 (482)
Q Consensus 192 ~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~-~~~~~~~~-~-~~~-~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 267 (482)
..+..+.....+...+..++..+........ .+...... + ++. ...+..+.++..++....|+|.|.+.+....+|
T Consensus 157 ~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E 236 (469)
T PRK11049 157 GEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAE 236 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 5555544444333222222222221111100 00000000 0 100 000123346778999999999999999999999
Q ss_pred hCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhh
Q 011580 268 VKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYA 302 (482)
Q Consensus 268 m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~ 302 (482)
+|||+ |+++|++..+...+.++|++.......
T Consensus 237 ~knP~---r~iPrai~~~~~~~~~~y~l~~~~~~~ 268 (469)
T PRK11049 237 TKDPE---KSLPRAINSIPIRIIMFYVFALIVIMS 268 (469)
T ss_pred hcCHh---hHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 99997 789999987777888888876665543
No 25
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.65 E-value=3.3e-13 Score=138.77 Aligned_cols=370 Identities=12% Similarity=0.079 Sum_probs=203.1
Q ss_pred CCCccccchHHHHHHHHHhhhhhhhhhHHHHHHH-hhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHH
Q 011580 31 DGRLKRTGTLWTASAHIITAVIGSGVLSLAWATA-QLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVD 109 (482)
Q Consensus 31 ~~~~~~~~s~~~a~~~l~~~~iG~GiLslP~af~-~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~ 109 (482)
+++.+|+.+.++.....++++||+|++..|-... +.|. ..++..++.+++....+..+.|...+.+ ..| ++.+
T Consensus 7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P-~aG----g~y~ 80 (456)
T PRK10238 7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEP-VAG----SFSH 80 (456)
T ss_pred chhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC----CHHH
Confidence 3357888999999999999999999988777665 5554 5667788888888888888888665543 344 5566
Q ss_pred HHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcc
Q 011580 110 AVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFD 189 (482)
Q Consensus 110 l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~ 189 (482)
.+++.+||...+++.+..++.....+.+.....++++....+. .+...+.++. +.+.-.......|
T Consensus 81 ~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~~~~~~~~i~-~~~~~~lN~~gv~ 146 (456)
T PRK10238 81 FAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-------------IPTWVSAAVF-FVVINAINLTNVK 146 (456)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------CcHHHHHHHH-HHHHHHHHHHhHH
Confidence 6788899999999999999888888888877777777654431 1111111111 1222222333445
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-CCcccc-ccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhh
Q 011580 190 QLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFR-GSLTGI-SIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDT 267 (482)
Q Consensus 190 ~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 267 (482)
....+........+...++.++..+.......+.+ ...... +.+... +..+.++..+++...|+|.|.+.+....+|
T Consensus 147 ~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~af~G~e~~~~~aeE 225 (456)
T PRK10238 147 VFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFL-PHGFTGLVMMMAIIMFSFGGLELVGITAAE 225 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCc-cccHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 55555544444433322222221221111111110 000000 000011 112335567788899999999999999999
Q ss_pred hCCCCccccchhhHHHHHHHHHHHHHHHHHhHHh--hhcCCCc--ccccccccccCCCchHHHHHHHHHHHHHHHhhhhc
Q 011580 268 VKSPPSESKTMKKASLISVGVTTLFYMLCGCFGY--AAFGDLS--PGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVF 343 (482)
Q Consensus 268 m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy--~~fG~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~ 343 (482)
+|||+ |+.+|++..+.....++|+..-.... ..+.+-. .+....-+......+...+.+....+..+.+..-.
T Consensus 226 ~knP~---r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~ 302 (456)
T PRK10238 226 ADNPE---QSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSC 302 (456)
T ss_pred hcChh---hHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 88999999888888888876433321 1111110 01111000001112334444555555544444333
Q ss_pred ccchHHHHHHHhhh-hCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccc--hHHHHHHhhhhhhhh
Q 011580 344 CQPLFAFIEKQAHQ-RFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPF--FNDVVGLLGALGFWP 420 (482)
Q Consensus 344 ~~p~~~~~~~~~~~-~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~--~~~v~~l~Ga~~~~~ 420 (482)
+...-+.+...-+. ..| ++..+.++.+.| ..-+.+...+..+..++....|+ ++.++++.+ .+..
T Consensus 303 ~~~~sR~l~a~ardg~lP--~~f~kv~~~~~P--------~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~--~~~~ 370 (456)
T PRK10238 303 VYCNSRMLFGLAQQGNAP--KALASVDKRGVP--------VNTILVSALVTALCVLINYLAPESAFGLLMALVV--SALV 370 (456)
T ss_pred HHHHHHHHHHHHhCCCcc--HHHHhhCcCCCc--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHH
Confidence 33333333322111 112 111111111222 23333333333333333223342 555556543 3457
Q ss_pred hHhhhhHHHHHHHhCC
Q 011580 421 LTVYFPVEMYIAQKKI 436 (482)
Q Consensus 421 l~~ilP~~~~l~~~~~ 436 (482)
+.|.+|.+.+++.+|+
T Consensus 371 i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 371 INWAMISLAHMKFRRA 386 (456)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999987753
No 26
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.65 E-value=8.5e-14 Score=135.88 Aligned_cols=371 Identities=17% Similarity=0.174 Sum_probs=234.4
Q ss_pred CCCCccccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHH
Q 011580 30 DDGRLKRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYV 108 (482)
Q Consensus 30 ~~~~~~~~~s~~~a~~~l~~~~iG~Gi-LslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~ 108 (482)
++.+.+|..++.+--+.-++..||+|. +.-..+.+.+|.- -++.-+++|++...-++.+.|.... +|..| ++.
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~-~p~~g----SF~ 80 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVA-NPVSG----SFS 80 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC----cHH
Confidence 344567878899999999999999999 6688888888864 5566888999999999999996554 33333 999
Q ss_pred HHHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHH--HHHhhcCC
Q 011580 109 DAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIV--EIVLSQIP 186 (482)
Q Consensus 109 ~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i--~~pl~~~~ 186 (482)
+.+++.+|++.+++.++..++.....+++.+...+.+++.+++. .+.+.+.+...++ ..=+...|
T Consensus 81 ~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~-------------vP~Wv~al~~~~l~~~~NL~sVk 147 (462)
T COG1113 81 DYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD-------------VPQWVFALAAVVLLLAVNLISVK 147 (462)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998873 2122333333332 33334667
Q ss_pred CcchhH-HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhH
Q 011580 187 DFDQLW-WLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 265 (482)
Q Consensus 187 ~l~~l~-~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~ 265 (482)
.+..+. |++.+-+..++...++.++..+. ...++......++..-+.-..+..+.+++.++.+.+|||.|.+.+--..
T Consensus 148 ~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~-g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA 226 (462)
T COG1113 148 VFGELEFWFALIKVAAIIAFIVVGIVLLFG-GFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITA 226 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777777 44555555554433333332222 2222111111111110001122345688899999999999999999999
Q ss_pred hhhCCCCccccchhhHHHHHHHHHHHHHHH-----HHhHHhhhcCCCcccccccccccCCCchHHHHHHHHHHHHHHHhh
Q 011580 266 DTVKSPPSESKTMKKASLISVGVTTLFYML-----CGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAY 340 (482)
Q Consensus 266 ~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~-----~g~~gy~~fG~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 340 (482)
+|.|||+ |..+|++.--..-..++|+. ..+.-+-.++++.++-+.. |..-.-.+...+.|+........+.
T Consensus 227 ~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~-f~~iGi~~Aa~i~N~VVLtAa~S~~ 302 (462)
T COG1113 227 AEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTV-FSLIGIPFAAGIMNFVVLTAALSAL 302 (462)
T ss_pred HhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHH-HHHcCCcccccceeEEEeechhhcc
Confidence 9999997 78889988777777777763 3344444445533332222 2111122333444444444444444
Q ss_pred hhcccchHHHHHHHhhhh-CCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccc--hHHHHHHhhhhh
Q 011580 341 QVFCQPLFAFIEKQAHQR-FPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPF--FNDVVGLLGALG 417 (482)
Q Consensus 341 pl~~~p~~~~~~~~~~~~-~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~--~~~v~~l~Ga~~ 417 (482)
---++..-+.+..+..+. -|. ...+-++..+| ...+.+..+...++.++....|. |+.+.+..+..
T Consensus 303 NSglystsRmL~~la~~g~APk--~~~klsk~gVP--------~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~- 371 (462)
T COG1113 303 NSGLYSTSRMLYSLAKQGDAPK--AFAKLSKRGVP--------VNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLG- 371 (462)
T ss_pred cccccccchHHHHHhhcCcccH--hHhhccccCCC--------HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH-
Confidence 333333334444432211 111 11221222344 56678888888999999999993 44444444432
Q ss_pred hhhhHhhhhHHHHHHHhCC
Q 011580 418 FWPLTVYFPVEMYIAQKKI 436 (482)
Q Consensus 418 ~~~l~~ilP~~~~l~~~~~ 436 (482)
.+..+.+=.+.|+|.||.
T Consensus 372 -~l~vW~~I~~s~l~~rk~ 389 (462)
T COG1113 372 -LLFVWLMILLSQLKLRKA 389 (462)
T ss_pred -HHHHHHHHHHHHHHHHhc
Confidence 345555666778888773
No 27
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.65 E-value=8.3e-13 Score=136.62 Aligned_cols=252 Identities=12% Similarity=0.049 Sum_probs=161.7
Q ss_pred ccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChh-hHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHH
Q 011580 34 LKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWI-AGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVR 112 (482)
Q Consensus 34 ~~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~-~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~ 112 (482)
++|+.+.++++...+++++|+|++.+|....+.|-. ..++..++.++.....+..+.|...+.+.+.|. ..+..+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG----~y~y~~ 80 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGG----IYAYAR 80 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC----hhhhHH
Confidence 367789999999999999999999999998765533 235667788888888888888876655432443 333458
Q ss_pred hhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhH-HHHHHHHHhhcCCCcchh
Q 011580 113 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMI-AFGIVEIVLSQIPDFDQL 191 (482)
Q Consensus 113 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l 191 (482)
+.+||+.+++..+..++.......++.....+++..+++... ... . ...+.. +..+++.-....+..+..
T Consensus 81 ~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~-----~~~--~--~~~~~~~~~~~~~~~~ln~~Gi~~~ 151 (473)
T TIGR00905 81 EGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG-----SGN--P--VPSILGASVLLWVFTFLVLRGVRQA 151 (473)
T ss_pred hHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----CCC--c--HHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 889999999999998877666667776666666666654210 000 0 011111 112222333455667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCC
Q 011580 192 WWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSP 271 (482)
Q Consensus 192 ~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 271 (482)
.++..+.....+...++.+...+... +......+..+. .. ......+..+..++....|+|.|.+......+|+||
T Consensus 152 ~~i~~~~~~~~l~~l~~~ii~~~~~~-~~~~~~~~~~~~-~~-p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~- 227 (473)
T TIGR00905 152 AFINTITTIAKLIPLFLFIIIGWFWF-KLDLFTADFWGH-DV-PSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN- 227 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CchhcccccCcc-CC-CcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-
Confidence 77666666554433322222222221 111100000000 00 000112345667888999999999999999999999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHhHHhhhcC
Q 011580 272 PSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG 305 (482)
Q Consensus 272 ~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG 305 (482)
+ |+.+|++..+..++.++|++.........+
T Consensus 228 ~---r~iPrai~~~~~i~~~~Yil~~~~~~~~~~ 258 (473)
T TIGR00905 228 K---SDVGKATVLGTLGALVIYILITLLSLGVLP 258 (473)
T ss_pred c---ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 5 899999999999999999988776544333
No 28
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.64 E-value=1.6e-12 Score=133.95 Aligned_cols=245 Identities=15% Similarity=0.077 Sum_probs=153.4
Q ss_pred CCccccchHHHHHHHHHhhhhhhhhhHHHHHH-HhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHH
Q 011580 32 GRLKRTGTLWTASAHIITAVIGSGVLSLAWAT-AQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDA 110 (482)
Q Consensus 32 ~~~~~~~s~~~a~~~l~~~~iG~GiLslP~af-~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l 110 (482)
.+.+|+.+.++.+...+++++|+|++.+|... +.+|. ..++..++.+++....+..+.|...+.+ ..| ...+.
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P-~~G----g~y~y 78 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNP-AAS----SFSRY 78 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCC----CHHHH
Confidence 35678889999999999999999999987764 45565 4688888899999999999999776543 344 44446
Q ss_pred HHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcch
Q 011580 111 VRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQ 190 (482)
Q Consensus 111 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 190 (482)
+++.+||..++++.+..++.....+.......+.++..+++. .+...+.+.. +++.-....+..+.
T Consensus 79 ~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-~~l~~~ln~~gv~~ 144 (457)
T PRK10580 79 AQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPT-------------VPHWIWVLSV-VLIICAVNLMSVKV 144 (457)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CChHHHHHHH-HHHHHHHHHccchh
Confidence 788899999999999888766555555555555555443321 1111222222 22223334445555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH--HH-hhhhcCCCCCCcccccccc-ccchhhHHHHHHHHHHHHHHhcccchhHhhHh
Q 011580 191 LWWLSIVAAVMSFTYSTIGLGLG--IA-KVAETGKFRGSLTGISIGT-VSETQKIWRSFQALGDIAFAYSYSIILIEIQD 266 (482)
Q Consensus 191 l~~~s~~~~~~~~~~~~i~i~~~--i~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 266 (482)
...+........+...++.+... +. ....+......... .+++ ...+..+.++..++....|+|.|.+.+....+
T Consensus 145 ~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~ 223 (457)
T PRK10580 145 FGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHN-LWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAG 223 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccc-cCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 55554443333332211111111 11 11111100000000 0110 00011234677888999999999999999999
Q ss_pred hhCCCCccccchhhHHHHHHHHHHHHHHHHHhHH
Q 011580 267 TVKSPPSESKTMKKASLISVGVTTLFYMLCGCFG 300 (482)
Q Consensus 267 ~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~g 300 (482)
|+|||+ |+.+|++..+...+.++|+...+..
T Consensus 224 E~knP~---k~iPrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 224 EAKDPE---KSIPRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred HhcChh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997 7899999988888888888775544
No 29
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.64 E-value=8e-13 Score=136.55 Aligned_cols=370 Identities=12% Similarity=0.095 Sum_probs=203.7
Q ss_pred ccchHHHHHHHHHhhhhhhhhhHHHHHHH-hhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhh
Q 011580 36 RTGTLWTASAHIITAVIGSGVLSLAWATA-QLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSN 114 (482)
Q Consensus 36 ~~~s~~~a~~~l~~~~iG~GiLslP~af~-~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~ 114 (482)
|+.+.++.+...++++||+|++.+|.... ..|....++..++.++.....+..+.|...+.+...|. .+.| +++.
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG-~y~y---~~~~ 76 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGG-VYSY---AKAG 76 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC-hhhh---HHhH
Confidence 46789999999999999999999998865 44543345567888888888888888876654432222 2444 7889
Q ss_pred hcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchh-HH--HHHHHHHhhcCCCcchh
Q 011580 115 LGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYM-IA--FGIVEIVLSQIPDFDQL 191 (482)
Q Consensus 115 ~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~-~i--~~~i~~pl~~~~~l~~l 191 (482)
+||..+++..+..++.......++.......+..+++... .....+. ++ ..+..+-....+..+..
T Consensus 77 fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-----------~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~ 145 (468)
T TIGR03810 77 FGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG-----------GGNNPPSIIGASVLLWCVHFLVLRGVEGA 145 (468)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----------CCCcHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 9999999999999887766666776666666555443210 0011111 11 11122223344666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCC
Q 011580 192 WWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSP 271 (482)
Q Consensus 192 ~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 271 (482)
+++..+..+..+...++.+...+... +......+......+.......+..+..++....|+|.|.+....+.+|.||+
T Consensus 146 ~~i~~i~~~~ki~~l~~~ii~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~ 224 (468)
T TIGR03810 146 AFINTITTIAKLVPLFVFIVIGIFAF-KGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKR 224 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCc
Confidence 66666555544432222222222211 11111000000000000001122345578889999999999999999999985
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCcc----cc-cccccccCCCchHHHHHHHHHHHHHHHhhhhcccc
Q 011580 272 PSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSP----GN-LLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQP 346 (482)
Q Consensus 272 ~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~----~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p 346 (482)
|+.+|++..+...+.++|++..+..+...+.+.. +. ...-+......|...+.+++..+....+.--.+..
T Consensus 225 ----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~ 300 (468)
T TIGR03810 225 ----SDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLL 300 (468)
T ss_pred ----ccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988776655443211 11 10000001123445566666666666655443333
Q ss_pred hHHHHHHHhhh-hCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhc-cchHHHHHHhhhhhhhhhHhh
Q 011580 347 LFAFIEKQAHQ-RFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLL-PFFNDVVGLLGALGFWPLTVY 424 (482)
Q Consensus 347 ~~~~~~~~~~~-~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~i-p~~~~v~~l~Ga~~~~~l~~i 424 (482)
.-+.+...-++ ..|+ +..|.++.+.| ..-+.+...+.....++...- +.++.+.++.+. ...+.|.
T Consensus 301 ~sR~~~a~ardg~lP~--~f~k~~~~~tP--------~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~li~y~ 368 (468)
T TIGR03810 301 PAEIPLLMAKDKLMPK--YFGKENANGAP--------TNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS--AILVPYL 368 (468)
T ss_pred HHHHHHHHHhCCCccH--HHHhhCCCCCC--------HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHHH
Confidence 32332222111 1121 11221111233 222333333222222221111 235556665433 4578899
Q ss_pred hhHHHHHHHhCCC
Q 011580 425 FPVEMYIAQKKIP 437 (482)
Q Consensus 425 lP~~~~l~~~~~~ 437 (482)
++++.++|.++++
T Consensus 369 ~~~~~~~~l~~~~ 381 (468)
T TIGR03810 369 WSAAYQVKLSWRG 381 (468)
T ss_pred HHHHHHHHHHHhc
Confidence 9999888886543
No 30
>PRK10836 lysine transporter; Provisional
Probab=99.63 E-value=2.1e-12 Score=134.07 Aligned_cols=257 Identities=13% Similarity=0.048 Sum_probs=149.5
Q ss_pred cccCCCCCccccchHHHHHHHHHhhhhhhhhhHHHH-HHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCccc
Q 011580 26 KCFDDDGRLKRTGTLWTASAHIITAVIGSGVLSLAW-ATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRN 104 (482)
Q Consensus 26 ~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiLslP~-af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~ 104 (482)
+...|+.+.+|+.+.++.....++++||+|++..|. +.++.|....++..++.+++....+..+.|...+.+ +.|
T Consensus 5 ~~~~~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P-~sG--- 80 (489)
T PRK10836 5 TKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMP-VSG--- 80 (489)
T ss_pred cccCCcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCC---
Confidence 334455567888999999999999999999999996 666777644678899999999999999999776644 444
Q ss_pred ccHHHHHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhh-hhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhh
Q 011580 105 YTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSI-SMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLS 183 (482)
Q Consensus 105 ~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~ 183 (482)
.....+++.+|+..++++.+..++.. ..+.+....... .+..+.+ ..+...+.. ..++++-..
T Consensus 81 -g~y~y~~~~~g~~~gf~~Gw~~~~~~-~~~~a~~~~a~~~~~~~~~~-------------~~~~~~~~~-~~~~~~~~l 144 (489)
T PRK10836 81 -SFATYGQNYVEEGFGFALGWNYWYNW-AVTIAVDLVAAQLVMSWWFP-------------DTPGWIWSA-LFLGVIFLL 144 (489)
T ss_pred -CHHHHHHHHcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcCC-------------CCchHHHHH-HHHHHHHHH
Confidence 44555678899998898888877643 333322222222 2222111 001111111 222222223
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh--hhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchh
Q 011580 184 QIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAK--VAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIIL 261 (482)
Q Consensus 184 ~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i 261 (482)
.....+..+.+........+...+..+...+.. .......+........++......+..+..+.....|+|.|.+.+
T Consensus 145 N~~gv~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~ 224 (489)
T PRK10836 145 NYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELI 224 (489)
T ss_pred HHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHH
Confidence 333344333333222222222111111111111 111110000000100000000112334455566677999999999
Q ss_pred HhhHhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcC
Q 011580 262 IEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG 305 (482)
Q Consensus 262 ~~i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG 305 (482)
....+|+|||+ |+.+|++..++..+.++|++.........+
T Consensus 225 ~~~a~E~knP~---r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp 265 (489)
T PRK10836 225 GIAAGESEDPA---KNIPRAVRQVFWRILLFYVFAILIISLIIP 265 (489)
T ss_pred HHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 99999999997 899999999999999999987665544443
No 31
>TIGR00909 2A0306 amino acid transporter.
Probab=99.62 E-value=5.7e-13 Score=136.37 Aligned_cols=291 Identities=14% Similarity=0.018 Sum_probs=181.0
Q ss_pred cccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhh
Q 011580 35 KRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSN 114 (482)
Q Consensus 35 ~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~ 114 (482)
+|+.+.++.+...+++++|+|++.+|......+-...++..++.+++....+..+.|..++.+ +.|. .++ ..++.
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p-~~Gg-~y~---~~~~~ 76 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLP-VAGS-PYT---YAYEA 76 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCc-cee---eHHHH
Confidence 578899999999999999999999997765443234566677788888888888888766544 3342 234 45678
Q ss_pred hcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCC---CccCCCchhHHHHHHHHHhhcCCCcchh
Q 011580 115 LGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNP---CHMNSNPYMIAFGIVEIVLSQIPDFDQL 191 (482)
Q Consensus 115 ~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~---~~~~~~~~~~i~~~i~~pl~~~~~l~~l 191 (482)
+||+.+++..+..++.....+..+....++++..+++....+ .+.... ..+....+..+..++++-+...+..+..
T Consensus 77 ~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~ 155 (429)
T TIGR00909 77 MGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLD-LPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKES 155 (429)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-CchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHH
Confidence 999999999999988888888888888888888777531100 000000 0000011122223333334455667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCC
Q 011580 192 WWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSP 271 (482)
Q Consensus 192 ~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 271 (482)
.+++.+.....+...++.+...+.+. +.. + +.+.. +....++..++....|+|.|.+.+....+|+|||
T Consensus 156 ~~~~~v~~~~~i~~l~~~~~~~~~~~-~~~----~-----~~~~~-~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p 224 (429)
T TIGR00909 156 GKVNDILVVLKVAALLLFAALGAIHF-ASN----N-----YTPFM-PMGFGGVGAATALVFFAFIGFEAISTAAEEVKNP 224 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhC-cHH----h-----cCCCC-CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCc
Confidence 77777766665543332222222221 100 0 11111 1233466788899999999999999999999999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCc--c--cccccccccCCCchHHHHHHHHHHHHHHHhhhhccc
Q 011580 272 PSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS--P--GNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQ 345 (482)
Q Consensus 272 ~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~--~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~ 345 (482)
+ |+.+|++..++.++.++|++.........+.+. . +....-......++...+..++.++....+.--.+.
T Consensus 225 ~---r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 299 (429)
T TIGR00909 225 E---RDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIY 299 (429)
T ss_pred c---ccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 789999999999999999988766554332211 0 000000000112344455666666666666544433
No 32
>PRK11021 putative transporter; Provisional
Probab=99.62 E-value=2.9e-12 Score=130.20 Aligned_cols=230 Identities=13% Similarity=0.063 Sum_probs=147.3
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcCc
Q 011580 39 TLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGF 118 (482)
Q Consensus 39 s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~~ 118 (482)
+.++++...++++||+|++.+|-...+.+-...++..++.++.....+..+.|...+.+ +.| .....+++.+||+
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P-~aG----G~y~y~~~~~G~~ 76 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFP-HAG----GPAHFVGMAFGPR 76 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCC----CHHHhHHHHhCch
Confidence 57899999999999999999888776553345788888999999999999999777644 344 3345567889999
Q ss_pred ceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHHHHH
Q 011580 119 QVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVA 198 (482)
Q Consensus 119 ~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 198 (482)
.+++..+..++.......+.......++..+++. . .+ ..+...+..++++-+...+..|...++..+.
T Consensus 77 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--~~-~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~ 144 (410)
T PRK11021 77 LGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGW---------S--SW-QLLLAELLTLALLWLLNLRGASSSANLQTVI 144 (410)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC---------C--Cc-hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999887654444344434444455444331 0 11 0111112222233334445555555555443
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCCCccccch
Q 011580 199 AVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTM 278 (482)
Q Consensus 199 ~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~ 278 (482)
.+..+. ++...+.. .+. ...+ ..+.+. ...++.++..++....|+|.|.+.+....+|+|||+ |++
T Consensus 145 ~~~~~~----i~~~~~~~--~~~-~~~~---~~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~i 210 (410)
T PRK11021 145 ALLIVA----LVVAIWWA--GDI-KPAD---IPFPAP-GSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDF 210 (410)
T ss_pred HHHHHH----HHHHHHHH--cCC-chhc---CCCCCC-CCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccc
Confidence 322221 11111111 111 0111 111111 112345677889999999999999999999999997 899
Q ss_pred hhHHHHHHHHHHHHHHHHHhH
Q 011580 279 KKASLISVGVTTLFYMLCGCF 299 (482)
Q Consensus 279 ~~~~~~s~~~~~i~Y~~~g~~ 299 (482)
+|++..+..++.++|++....
T Consensus 211 PrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 211 PRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987765
No 33
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.60 E-value=3.2e-12 Score=134.10 Aligned_cols=375 Identities=12% Similarity=0.054 Sum_probs=211.6
Q ss_pred CCccccchHHHHHHHHHhhhhhhhhhHHHHHH--HhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHH
Q 011580 32 GRLKRTGTLWTASAHIITAVIGSGVLSLAWAT--AQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVD 109 (482)
Q Consensus 32 ~~~~~~~s~~~a~~~l~~~~iG~GiLslP~af--~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~ 109 (482)
.+.+|+.+.++.+...++.++|+|++.+|-.. ...|.. .++.+++.++.+...+....|...+.+ ..|. .+.|.
T Consensus 24 ~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P-~sGg-~Y~y~- 99 (557)
T TIGR00906 24 SKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVP-KAGS-AYLYS- 99 (557)
T ss_pred cchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCc-ceeeH-
Confidence 35788899999999999999999999998643 346754 566788888888888888888766544 4554 25555
Q ss_pred HHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhcc----ccCCCCCCCCccCCC-chhHHHHHHHHHhhc
Q 011580 110 AVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNC----FHSKGDKNPCHMNSN-PYMIAFGIVEIVLSQ 184 (482)
Q Consensus 110 l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~----~~~~~~~~~~~~~~~-~~~~i~~~i~~pl~~ 184 (482)
++.+|+...+++.+..++.....+.+.....++++..++.... ....+...+ ..... ....+..++++-+..
T Consensus 100 --~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~-~l~~~~~~~a~~ii~l~~~ln 176 (557)
T TIGR00906 100 --YVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYD-GLAEYPDFFAVCLILLLAVLL 176 (557)
T ss_pred --HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCC-cccccchHHHHHHHHHHHHHH
Confidence 5669999999999998887776666666667777776664210 000000000 00011 111122222222345
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhh
Q 011580 185 IPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEI 264 (482)
Q Consensus 185 ~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i 264 (482)
.+..+..+++..+.....+...++.++....+...+ +.... .....++.. +..+.+++.+.....|+|.|...+...
T Consensus 177 ~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~-~~~~~-~~~~~~~f~-p~g~~g~l~g~~~~~faf~Gfd~v~~~ 253 (557)
T TIGR00906 177 SFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVA-NWSIT-EEKGAGGFM-PYGFTGVLSGAATCFFAFIGFDAIATT 253 (557)
T ss_pred HhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCch-hcccc-ccccCCCCC-CcchHHHHHHHHHHHHHHhhHHHHHHh
Confidence 566777777766666555543333333322222110 00000 000000111 112346788899999999999999999
Q ss_pred HhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCC---cccccccccccCCCchHHHHHHHHHHHHHHHhhh
Q 011580 265 QDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDL---SPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQ 341 (482)
Q Consensus 265 ~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~p 341 (482)
.+|+|||+ |++++++..++.+++++|.++.+.-...-..+ ..+.+...+.....+|...+..+...+.+..+..
T Consensus 254 aeE~knP~---r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~ 330 (557)
T TIGR00906 254 GEEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLL 330 (557)
T ss_pred HHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 99999997 78999999999999999998776544333221 1111111111112234455555555555555444
Q ss_pred hcccchHHHHHHHhhh-hCCCCccccccc-ccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhh
Q 011580 342 VFCQPLFAFIEKQAHQ-RFPDSEFITKDI-KVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFW 419 (482)
Q Consensus 342 l~~~p~~~~~~~~~~~-~~~~s~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~l~Ga~~~~ 419 (482)
..+...-+.+...-.. ..|. +..|-+ +.+. +.+ ...+..+.+.+++... +++.+.++.. .+.
T Consensus 331 ~~~~~~sRil~amarDGlLP~--~fakv~~r~~t---------P~~--Ail~~~iv~~il~~~~-~~~~l~~l~s--ig~ 394 (557)
T TIGR00906 331 GGMFPLPRVIYAMARDGLLFK--WLAQINSKTKT---------PIN--ATVVSGAIAALMAFLF-DLKALVDLLS--IGT 394 (557)
T ss_pred HHHHHHHHHHHHHHcCCCccH--HHhccCCCCCC---------cHH--HHHHHHHHHHHHHHHc-CHHHHHHHHH--HHH
Confidence 3333333333332111 1111 011111 0112 222 1222223333444333 5666666553 345
Q ss_pred hhHhhhhHHHHHHHhC
Q 011580 420 PLTVYFPVEMYIAQKK 435 (482)
Q Consensus 420 ~l~~ilP~~~~l~~~~ 435 (482)
.+.|.++++..+.+|+
T Consensus 395 ll~y~lv~~~~l~lR~ 410 (557)
T TIGR00906 395 LLAYSLVAACVLILRY 410 (557)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 7889999887777664
No 34
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.60 E-value=4.2e-12 Score=131.78 Aligned_cols=245 Identities=14% Similarity=0.058 Sum_probs=158.0
Q ss_pred cccchHHHHHHHHHhhhhhhhhhHHH-HHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHh
Q 011580 35 KRTGTLWTASAHIITAVIGSGVLSLA-WATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRS 113 (482)
Q Consensus 35 ~~~~s~~~a~~~l~~~~iG~GiLslP-~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~ 113 (482)
||+.+.++.....++.+||+|++..| .+.++.|....+...++.+++....+..+.|.....+...| .|.+.+++
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG----~~~~~~~~ 76 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG----SFATYASR 76 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CHHHHHHH
Confidence 46788999999999999999998755 55566664434666888888888888888887765442322 57778899
Q ss_pred hhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHH
Q 011580 114 NLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWW 193 (482)
Q Consensus 114 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 193 (482)
.+||..++++.+..++.....+.+.....+.++....+ ......|..+. .++.-+...+..+...+
T Consensus 77 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~-~~~~~~in~~gv~~~~~ 142 (478)
T TIGR00913 77 FVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD-------------KVNPAVWIAIF-YVFIVIINLFGVKGYGE 142 (478)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------CCCHHHHHHHH-HHHHHHHHHhcchHHHH
Confidence 99999999999999888877777777777766653322 01111222222 22222334455666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccccc---ccccch---hhHHHHHHHHHHHHHHhcccchhHhhHhh
Q 011580 194 LSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISI---GTVSET---QKIWRSFQALGDIAFAYSYSIILIEIQDT 267 (482)
Q Consensus 194 ~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 267 (482)
+........+...+..++..+.....+.+.+.......+ +...+. ..+.++..++....|+|.|.+.+....+|
T Consensus 143 ~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E 222 (478)
T TIGR00913 143 AEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGE 222 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHh
Confidence 555444333322222222222222111111110000000 001111 12456778899999999999999999999
Q ss_pred hCCCCccccchhhHHHHHHHHHHHHHHHHHhHH
Q 011580 268 VKSPPSESKTMKKASLISVGVTTLFYMLCGCFG 300 (482)
Q Consensus 268 m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~g 300 (482)
+|||+ |+++|++..+..++.++|++..+..
T Consensus 223 ~knP~---r~iPrai~~~~~~~~~~Y~l~~~~~ 252 (478)
T TIGR00913 223 AANPR---KSIPRAAKRTFWRILVFYILTLFLI 252 (478)
T ss_pred hcChh---hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99997 8999999999999999999876543
No 35
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.60 E-value=1.5e-13 Score=136.33 Aligned_cols=371 Identities=14% Similarity=0.129 Sum_probs=224.8
Q ss_pred CCCCccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhC--hhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccH
Q 011580 30 DDGRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLG--WIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTY 107 (482)
Q Consensus 30 ~~~~~~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G--~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y 107 (482)
+..+.+||.+.+..+..+++++||+|++..|....+.+ ...++++.+++++++...+..-.|..... |++|.+ +.|
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~i-pksGgd-~ay 83 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSI-PKSGGD-YAY 83 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccc-cCCCcc-hhh
Confidence 44567888999999999999999999999999987555 34456778899999999999999966544 356652 333
Q ss_pred HHHHHhhhcCcceeehHHHHHHHHHHHH-HHHHHHhhhh-hHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcC
Q 011580 108 VDAVRSNLGGFQVKICGLVQYLNLFGVA-IGYTIASSIS-MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQI 185 (482)
Q Consensus 108 ~~l~~~~~G~~~~~i~~~~~~~~~~g~~-~~y~i~~~~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~ 185 (482)
..++||+...+...+.-++...... ..+.+.++++ +.+.++ .|..++...-.+.++.+ .+...
T Consensus 84 ---i~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-----------~c~~p~~~~~lla~~~l-~~lt~ 148 (479)
T KOG1287|consen 84 ---ISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-----------LCDVPRVASKLLAAALL-VLLTL 148 (479)
T ss_pred ---HHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-----------CCCCchHHHHHHHHHHH-HHHHH
Confidence 3567999988888877666666655 7778888887 555554 13333333333333333 33334
Q ss_pred CCcchhHHHHHHHHHHHHH---HHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhH
Q 011580 186 PDFDQLWWLSIVAAVMSFT---YSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILI 262 (482)
Q Consensus 186 ~~l~~l~~~s~~~~~~~~~---~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~ 262 (482)
.|...+++.+.+..+.+.. .+.++++..++........+.+.+.. .+ ...+..+...++-.-.|||.|+..+-
T Consensus 149 ~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f--~g--~~~~~g~i~lafysglfa~~GWd~lN 224 (479)
T KOG1287|consen 149 INSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEF--EG--SDTDVGNIALAFYSGLFAFSGWDYLN 224 (479)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEeccccccccccc--cc--CcCchHHHHHHHHHhhhcccCchhhc
Confidence 5555556665555555444 33333333333222211111000000 00 11222356688889999999999999
Q ss_pred hhHhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCc---cccccccccc-CCCchHHHHHHHHHHHHHHH
Q 011580 263 EIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS---PGNLLTGFGF-YNPYWLLDIANAAIVIHLVG 338 (482)
Q Consensus 263 ~i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~---~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~ 338 (482)
.+.+|+|||. |++++++..++.+++++|+++-+..+.+-..+. .+.+-..|.. -.+.+. ..+-++..++.+.
T Consensus 225 ~vteEiknP~---ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G 300 (479)
T KOG1287|consen 225 YVTEEIKNPR---RTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIG 300 (479)
T ss_pred cchHhhcCcc---ccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhh
Confidence 9999999998 899999999999999999999887766544321 1111111110 011222 3444555555555
Q ss_pred hhhhcccch-HHHHHHHhhhhCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhh
Q 011580 339 AYQVFCQPL-FAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALG 417 (482)
Q Consensus 339 s~pl~~~p~-~~~~~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~l~Ga~~ 417 (482)
+.--.++.. |.....-=+++.|+. .... .++..++ ....++.....++.....|+..+++..+=.-
T Consensus 301 ~~n~~ifs~SR~~~~~areG~LP~~--~s~i--------~~~~~TP---~~allf~~~~~i~~~~~~d~~~LIny~sf~~ 367 (479)
T KOG1287|consen 301 SLNSVIFSSSRLFYAGAREGHLPAF--FSMI--------SVRRFTP---RPALLFSGLLSIVLSLIGDFDQLINYVSFAY 367 (479)
T ss_pred hhhhHHHHHHHHHHHHHHccCccHH--HHhh--------cCCCCCC---hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 553333222 333322111122221 0000 0011111 1344455556666666779999999998777
Q ss_pred hhhhHhhhhHHHHHHHhCCCc
Q 011580 418 FWPLTVYFPVEMYIAQKKIPK 438 (482)
Q Consensus 418 ~~~l~~ilP~~~~l~~~~~~~ 438 (482)
.....+.+=+++++|.++++.
T Consensus 368 ~l~~~l~~~gll~lR~k~p~~ 388 (479)
T KOG1287|consen 368 WLFRGLSMAGLLWLRWKHPPL 388 (479)
T ss_pred HHHHHHHHHHHHHHHhhCCCC
Confidence 777777788889999887754
No 36
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.59 E-value=4.3e-12 Score=139.26 Aligned_cols=255 Identities=15% Similarity=0.075 Sum_probs=161.4
Q ss_pred ccccchHHHHHHHH-Hhhhhhhhh-hHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHH
Q 011580 34 LKRTGTLWTASAHI-ITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAV 111 (482)
Q Consensus 34 ~~~~~s~~~a~~~l-~~~~iG~Gi-LslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~ 111 (482)
+.++.++++.++.- +.+++|+|+ +.+++...++|...+++++++.++++..++.-+.+......++.|. .| .+.
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG---~Y-~yi 149 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGG---AY-YLI 149 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccH---HH-HHH
Confidence 34566788888777 999999999 5588888999988889999999999999999999977653445554 23 245
Q ss_pred HhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchh
Q 011580 112 RSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQL 191 (482)
Q Consensus 112 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 191 (482)
++.||+..+..+.++.++.....+..|.+..++++..+++....... ..+ ..+.+.+. +..++++-+......+..
T Consensus 150 sralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~--~~~-~~~~~iia-~i~l~ll~~In~~Gvk~~ 225 (953)
T TIGR00930 150 SRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIM--VDP-INDIRIYG-TVTVVVLLGISFAGMEWE 225 (953)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--cCc-cccchHHH-HHHHHHHHHHHHhhHHHH
Confidence 77899999999999999989899999999999999888753211000 000 00111111 122222222333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccc---cc-cccc-hhhHH-HHHHHHHHHHHHhcccchhHhhH
Q 011580 192 WWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGIS---IG-TVSE-TQKIW-RSFQALGDIAFAYSYSIILIEIQ 265 (482)
Q Consensus 192 ~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~---~~-~~~~-~~~~~-~~~~~~~~~~faf~~~~~i~~i~ 265 (482)
.++..+.+++.+...+.+++..+... .+.+ .....+.. +. +..+ ..... +++..++++.+||.|......+.
T Consensus 226 ak~q~vl~vi~ll~ll~~iig~~~~~-~~~~-~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~s 303 (953)
T TIGR00930 226 NKAQVLFLVIVLLSILNIFVGTIIPA-FDKP-AKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANIS 303 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeecC-CCCC-ccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333221111111111000 0000 00000000 00 0000 01111 25677888888999999999999
Q ss_pred hhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHh
Q 011580 266 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGY 301 (482)
Q Consensus 266 ~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy 301 (482)
+|+|||+ |++++++..++.+++++|+++.++..
T Consensus 304 gElKnP~---r~IPratl~ai~i~~vlYllv~~~~~ 336 (953)
T TIGR00930 304 GDLKDPQ---KAIPKGTLLAILTTTVVYLGSVVLFG 336 (953)
T ss_pred HhccChh---hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 89999999999999999999876433
No 37
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.58 E-value=2e-12 Score=134.85 Aligned_cols=254 Identities=13% Similarity=0.092 Sum_probs=154.1
Q ss_pred CCCCccccchHHHHHHHHHhhhhhhhhhHHHHH-HHhhChhh-HHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccH
Q 011580 30 DDGRLKRTGTLWTASAHIITAVIGSGVLSLAWA-TAQLGWIA-GPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTY 107 (482)
Q Consensus 30 ~~~~~~~~~s~~~a~~~l~~~~iG~GiLslP~a-f~~~G~~~-gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y 107 (482)
++.+.+|+.+.++++...+++++|+|++..|.. .++.|-.. .++..++.+++....+..+.|.....+ +.|. .
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P-~sGG----~ 110 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIP-KSGG----E 110 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCc----h
Confidence 334578889999999999999999999998875 45566431 234556777778888888888766544 4442 3
Q ss_pred HHHHHhhhcCcceeehHHHHHHH-HHHHHHHHHHHhhhhhHH-hhhhccccCCCCCCCCccCCCc--hhHHHHHHHHHhh
Q 011580 108 VDAVRSNLGGFQVKICGLVQYLN-LFGVAIGYTIASSISMMA-IERSNCFHSKGDKNPCHMNSNP--YMIAFGIVEIVLS 183 (482)
Q Consensus 108 ~~l~~~~~G~~~~~i~~~~~~~~-~~g~~~~y~i~~~~~l~~-i~~~~~~~~~~~~~~~~~~~~~--~~~i~~~i~~pl~ 183 (482)
....++.+||...++..+..+.. ..+.+..+....++++.. +.+. . ..+... ...+..+++.-+.
T Consensus 111 y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~--------~---~~~~~~~~~i~~~~i~~~~~l 179 (501)
T TIGR00911 111 YNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD--------C---EVPEWAIRLVAVLCVLLLTLV 179 (501)
T ss_pred hhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------C---CCchHHHHHHHHHHHHHHHHH
Confidence 33456789999888887765432 223444455555555422 2221 0 001111 1111222233334
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHh
Q 011580 184 QIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIE 263 (482)
Q Consensus 184 ~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~ 263 (482)
..+..+...++..+.....+...++.++..+.....+...+.+ +...+.+ ...+..++..++....|+|.|...+..
T Consensus 180 n~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~-~~~~f~~--~~~~~~~~~~a~~~~~~af~G~e~~~~ 256 (501)
T TIGR00911 180 NCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLN-PKNAFEG--TETSAGGIVLAFYSGIWAYGGWNYLNF 256 (501)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC-cccccCC--CCCcHHHHHHHHHHHHHHHHhHHHHhh
Confidence 4556666666666665555543333333333322111111100 0000110 012244667888999999999999999
Q ss_pred hHhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcC
Q 011580 264 IQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFG 305 (482)
Q Consensus 264 i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG 305 (482)
..+|+|||+ |+.+|++..+..++.++|++..+......+
T Consensus 257 ~a~E~knP~---r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~ 295 (501)
T TIGR00911 257 VTEEVKNPY---RTLPIAIIISMPIVTFIYVLTNIAYFTVLS 295 (501)
T ss_pred hHHHhcCch---hhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999997 899999999999999999998665544443
No 38
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.54 E-value=1.3e-11 Score=126.90 Aligned_cols=245 Identities=15% Similarity=0.168 Sum_probs=151.7
Q ss_pred CCccccchHHHHHHHHHhhhhhhhhhHHHHHH-HhhChh-hHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHH
Q 011580 32 GRLKRTGTLWTASAHIITAVIGSGVLSLAWAT-AQLGWI-AGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVD 109 (482)
Q Consensus 32 ~~~~~~~s~~~a~~~l~~~~iG~GiLslP~af-~~~G~~-~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~ 109 (482)
.+.+|+.+.++++...++.++|+|++..|... ...|-. ..++.+++.+++....+....|.....+ +.|. .+.|.
T Consensus 4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P-~~GG-~y~y~- 80 (445)
T PRK11357 4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYP-ENGA-DYVYL- 80 (445)
T ss_pred ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCC-ceeeH-
Confidence 35788899999999999999999999988864 455643 3556678888888888888888776544 3443 24554
Q ss_pred HHHhhhcCcceeehHHHHH-HHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCc
Q 011580 110 AVRSNLGGFQVKICGLVQY-LNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDF 188 (482)
Q Consensus 110 l~~~~~G~~~~~i~~~~~~-~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l 188 (482)
++.+||...++..+..+ .........+....++++....+. . .. ......+..++.+-....+..
T Consensus 81 --~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~---------~--~~-~~~~~~~~~~~~~~~ln~~gv 146 (445)
T PRK11357 81 --KNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI---------D--PL-LGKFIAAGLIIAFMLLHLRSV 146 (445)
T ss_pred --HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------c--hH-HHHHHHHHHHHHHHHHHHhhh
Confidence 57799998888888644 333334445556666665433220 0 00 001111111122223344556
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhh
Q 011580 189 DQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTV 268 (482)
Q Consensus 189 ~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m 268 (482)
+...++..+.....+...++++...+... ...+.+...+. . ......+.++..++....|+|.|.+......+|+
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~ii~g~~~~-~~~~~~~~~~~-~---~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~ 221 (445)
T PRK11357 147 EGGAAFQTLITIAKIIPFTIVIGLGIFWF-KAENFAAPTTT-A---IGATGSFMALLAGISATSWSYTGMASICYMTGEI 221 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCcc-c---ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHh
Confidence 65556555555444432222222222211 11111111000 0 0011123466788899999999999999999999
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHHhHHh
Q 011580 269 KSPPSESKTMKKASLISVGVTTLFYMLCGCFGY 301 (482)
Q Consensus 269 ~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy 301 (482)
|||+ |+++|++..++.+++++|++......
T Consensus 222 k~P~---r~iP~Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 222 KNPG---KTMPRALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred cCcc---ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 89999999999999999998766543
No 39
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.54 E-value=2e-11 Score=125.43 Aligned_cols=240 Identities=11% Similarity=-0.013 Sum_probs=153.7
Q ss_pred CccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHH
Q 011580 33 RLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVR 112 (482)
Q Consensus 33 ~~~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~ 112 (482)
+.+|+.+.++.+...++.++|......+.+.++.|+..-++..++.+++....+..+.|...+.+ ..| .....++
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P-~~G----g~y~~~~ 78 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIP-TAG----GGYGFAR 78 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCC----CHHHHHH
Confidence 46788899999999999999955566788889999865555667777777777777888766544 344 3344668
Q ss_pred hhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhH
Q 011580 113 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLW 192 (482)
Q Consensus 113 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 192 (482)
+.+||..+++..+..++.......++....++++..+++.. . .+...+..++++-+...+..+...
T Consensus 79 ~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~-------------~-~~~~~~~~~~~~~~ln~~g~~~~~ 144 (442)
T TIGR00908 79 RAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG-------------P-GWLAALVFYIVFIGINILGVGEAA 144 (442)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------c-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999988887778888888888887666420 1 111222222222233334455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccccccc--ccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCC
Q 011580 193 WLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGT--VSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKS 270 (482)
Q Consensus 193 ~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~ 270 (482)
++..+..+..+...++.+ .. ...+.......+. .+.+ ...+..+.++..++....|+|.|.+.+....+|+||
T Consensus 145 ~i~~~~~~~~~~~l~i~~---~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~ 219 (442)
T TIGR00908 145 KLEFVVTAVAIIALGVFI---GA-MVPHFDSANLFNG-PQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKN 219 (442)
T ss_pred hHHHHHHHHHHHHHHHHH---HH-HhccCCHHHhccC-CccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 554443333222111111 11 0111000000000 0000 001112346778888899999999999999999999
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHhH
Q 011580 271 PPSESKTMKKASLISVGVTTLFYMLCGCF 299 (482)
Q Consensus 271 p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~ 299 (482)
|+ |+.+|++..+..++.++|+..-+.
T Consensus 220 P~---r~iprai~~s~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 220 PK---RDIPRGLIGAILTLLALAAGILVV 245 (442)
T ss_pred cc---cccCHHHHHHHHHHHHHHHHHHHH
Confidence 97 789999999999999988876443
No 40
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.51 E-value=4.2e-11 Score=122.89 Aligned_cols=348 Identities=14% Similarity=0.105 Sum_probs=195.8
Q ss_pred HHhhhhhhhhhHHHH-HHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcCcceeehHH
Q 011580 47 IITAVIGSGVLSLAW-ATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGL 125 (482)
Q Consensus 47 l~~~~iG~GiLslP~-af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~i~~~ 125 (482)
.++++||+|++..|- +.++.|. ..++..++.+++....+..+.|...+.+ +.| ...+.+++.+||..++++.+
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P-~~G----g~y~y~~~~~G~~~gf~~gw 76 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATP-DTG----SFSTYADKAIGRWAGYTIGW 76 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCC----CHHHHHHHHcChHHHHHHHH
Confidence 367899999988877 7778886 4788899999999999999999766543 344 55666789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchh-HHHHHHHHHhhcCCCcchhHHHHHHHHHHHHH
Q 011580 126 VQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYM-IAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFT 204 (482)
Q Consensus 126 ~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~-~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~ 204 (482)
..++.....+.......+..+....+ .. ..+. .+..++++-+...+..|..+.+..+.....+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~ 141 (446)
T PRK10197 77 LYWWFWVLVIPLEANIAAMILHSWVP-------------GI--PIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVI 141 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-------------cC--cHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHH
Confidence 99887766665555444444332211 11 1122 12222222233344555555555554444443
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCcccc-c-cc--cccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCCCccccchhh
Q 011580 205 YSTIGLGLGIAKVAETGKFRGSLTGI-S-IG--TVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKK 280 (482)
Q Consensus 205 ~~~i~i~~~i~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~ 280 (482)
..+..+...+.......+.. ...+. . ++ +.. +..+.++..++....|+|.|.+.+....+|+|||+ |+.+|
T Consensus 142 ~li~~ii~~~~~~~g~~~~~-~~~~~~~~~~~~~~~-p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~---r~iPr 216 (446)
T PRK10197 142 AILAFIFLGAVAISGFYPYA-EVSGISRLWDSGGFM-PNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE---KHIVR 216 (446)
T ss_pred HHHHHHHHHHHHhcCCCCCC-CCCcchhcCCCCCCC-cccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hhHHH
Confidence 22222222222111111100 00010 0 11 111 12344777999999999999999999999999997 78999
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCCccc-----c---cccccccCCCchHHHHHHHHHHHHHHHhhhhcccchHHHHH
Q 011580 281 ASLISVGVTTLFYMLCGCFGYAAFGDLSPG-----N---LLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIE 352 (482)
Q Consensus 281 ~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~-----~---i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~ 352 (482)
++..++..+.++|++..+........+..+ . ..... ...+...+.+++..+....+..-.+...-+.+.
T Consensus 217 ai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~ 293 (446)
T PRK10197 217 ATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELL---NIPHAKLIMDCVILLSVTSCLNSALYTASRMLY 293 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998666533332222111 0 11111 123344555665555555555444433333333
Q ss_pred HHhhh-hCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhcc--chHHHHHHhhhhhhhhhHhhhhHHH
Q 011580 353 KQAHQ-RFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLP--FFNDVVGLLGALGFWPLTVYFPVEM 429 (482)
Q Consensus 353 ~~~~~-~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip--~~~~v~~l~Ga~~~~~l~~ilP~~~ 429 (482)
..-++ ..|. +..|.++.+.| ..-+.+...+.+...+.....| .++.++++.+... .+.|.++++.
T Consensus 294 a~ardg~lP~--~~~~~~~~~~P--------~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a 361 (446)
T PRK10197 294 SLSRRGDAPA--VMGKINRSKTP--------YVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVS 361 (446)
T ss_pred HHHcCCCcCH--HHHhhCcCCCc--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 32211 1121 11221111233 2223333333333333333333 3677777766544 4888889888
Q ss_pred HHHHhC
Q 011580 430 YIAQKK 435 (482)
Q Consensus 430 ~l~~~~ 435 (482)
+++.||
T Consensus 362 ~i~lr~ 367 (446)
T PRK10197 362 QLRMRK 367 (446)
T ss_pred HHHHHH
Confidence 888765
No 41
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.48 E-value=3.2e-11 Score=120.44 Aligned_cols=239 Identities=14% Similarity=0.127 Sum_probs=162.4
Q ss_pred cchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhc
Q 011580 37 TGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLG 116 (482)
Q Consensus 37 ~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G 116 (482)
+.|.+|....++++++|+|++.+|....+.+--.+.+..++.+++.......+.+..++.+.+ +..+..++.+|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~------~~~~~~~~~~G 75 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK------NFSEILSKYLG 75 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC------CHHHHHHHHhh
Confidence 568899999999999999999999998876666688888899999999999999977764322 78899999999
Q ss_pred CcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHHH
Q 011580 117 GFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSI 196 (482)
Q Consensus 117 ~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 196 (482)
|+.+++..+....+....+.......++.+....- + +.+ .+...+..+++.-....+.++...+++.
T Consensus 76 k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~--------~tp-~~~~~l~~l~~~~~~~~~Gi~~i~r~~~ 142 (359)
T TIGR00912 76 KILGRLLSILFILYFFLIAAYLIRIFADFIKTYLL----P--------RTP-IIVIIILIIIVSIYIVRKGIEVLLRTAE 142 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C--------CCC-HHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 99999999887777766665555555665543321 1 111 1222223333333345567777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHH-HHHHHHhcccchhHhhHhhhCCCCccc
Q 011580 197 VAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQAL-GDIAFAYSYSIILIEIQDTVKSPPSES 275 (482)
Q Consensus 197 ~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~faf~~~~~i~~i~~~m~~p~~~~ 275 (482)
+-....+...++.+ .. ...++...+.-.| .. +.++.+...+. +...++|.+...+.....++|||
T Consensus 143 i~~~~~i~~~~~il--~~-~~~~~~~~~~l~P------~~-~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~---- 208 (359)
T TIGR00912 143 ILLIIFLILFILVL--IL-LAPKLGNIKNLLP------VL-ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK---- 208 (359)
T ss_pred HHHHHHHHHHHHHH--HH-HhcccccHHHccC------cc-ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh----
Confidence 66655443211111 11 1111111111111 11 11223444333 47889999999989899999988
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCc
Q 011580 276 KTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS 308 (482)
Q Consensus 276 ~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~ 308 (482)
|+.+|+...+..++.++|...-+.....+|.+.
T Consensus 209 ~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~ 241 (359)
T TIGR00912 209 KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNV 241 (359)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence 789999999999999999999988888888653
No 42
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.44 E-value=1.2e-10 Score=119.25 Aligned_cols=293 Identities=18% Similarity=0.170 Sum_probs=179.6
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHH-HHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcC
Q 011580 39 TLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVT-YYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGG 117 (482)
Q Consensus 39 s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~-~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~ 117 (482)
++++++...++.++|+|++..| ...+.|.. .++..++.+.+. ...+....|..++ .|+.| .....+++.+||
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~-~p~~G----G~y~~~~~~~g~ 74 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSA-YPSAG----GIYVWVSRAFGP 74 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTT-TTSST----THHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcC----eeeehhhhcccc
Confidence 6889999999999999999999 77666665 666666666666 5777777776554 33444 455677888999
Q ss_pred cceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHHHH
Q 011580 118 FQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIV 197 (482)
Q Consensus 118 ~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 197 (482)
+.+++..+..++.......++.....+++...++... .+..+ ......+..++.......+..|..+++...
T Consensus 75 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~ 146 (426)
T PF13520_consen 75 FWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDL-------NPSPW-PQFLIAIILILLFTLLNLLGIKLSGKIQNI 146 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGG-------TCSHH-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cchhcccceeEEEeeccccccccchhhhhhhcccccc-------ccccc-hheeeeecccccceEeeechhhhhhhhhhh
Confidence 9999999999998888888888888888877664200 00000 011111222233333455667777777666
Q ss_pred HHHHHH-HHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCCCcccc
Q 011580 198 AAVMSF-TYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESK 276 (482)
Q Consensus 198 ~~~~~~-~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~ 276 (482)
.....+ ...++.+...+....++ ..+.. ....++..+. .+...+.++....|+|.|.+......+|+|| |
T Consensus 147 ~~~~~i~~~l~~~i~~~~~~~~~~-~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k 217 (426)
T PF13520_consen 147 LTVIKIVIPLLVLIILGIVSFSFS-GFNSL--SFSLSTFFPS-GWPGFLAGFSVAFFAFSGFEAIASLAEENKN-----K 217 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCC-HHH------SHSCSSCS-SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-----H
T ss_pred hhhhhhhhhhhhheeEEEeeeccc-ccccc--cccccccCCc-cccchhhHHHHHHhhcccccccccccccccc-----h
Confidence 665555 23222232333322111 11100 0000001111 1113578889999999999999999999764 5
Q ss_pred chhhHHHHHHHHHHHHHHHHHhHHhhhcCCCcc---cccc---ccc-ccCCCchHHHHHHHHHHHHHHHhhhhcccchHH
Q 011580 277 TMKKASLISVGVTTLFYMLCGCFGYAAFGDLSP---GNLL---TGF-GFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFA 349 (482)
Q Consensus 277 ~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~---~~i~---~~~-~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~ 349 (482)
+.+|++..+..++.++|.+.........+++.. ++.. ..+ ......+...+..++..+....+....+....+
T Consensus 218 ~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR 297 (426)
T PF13520_consen 218 TIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASR 297 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhh
Confidence 799999999999999999988777776665421 1211 000 001123555566666666666666655555555
Q ss_pred HHHHHh
Q 011580 350 FIEKQA 355 (482)
Q Consensus 350 ~~~~~~ 355 (482)
.+...-
T Consensus 298 ~l~~~a 303 (426)
T PF13520_consen 298 LLYAMA 303 (426)
T ss_dssp HHHHHH
T ss_pred cccccc
Confidence 555543
No 43
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.43 E-value=9e-11 Score=117.34 Aligned_cols=368 Identities=16% Similarity=0.090 Sum_probs=241.7
Q ss_pred CccccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHH
Q 011580 33 RLKRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAV 111 (482)
Q Consensus 33 ~~~~~~s~~~a~~~l~~~~iG~Gi-LslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~ 111 (482)
+.||+....+..+.-++..||+|. ++.-.+.+++|....++..++++.+.+..+.-+.|.....+ .+| +|.+.+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P-~sG----sF~~ya 115 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP-VSG----SFSTYA 115 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCC----chhhhh
Confidence 467888899999999999999999 67999999999998889999999999999999999776554 544 789999
Q ss_pred HhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHh--hcCCCcc
Q 011580 112 RSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVL--SQIPDFD 189 (482)
Q Consensus 112 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl--~~~~~l~ 189 (482)
.+..+|-.++.+.+..++....++...++..+..++.+++. ..+...|..++.++++.+ .-.|.+.
T Consensus 116 ~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~------------~v~~~~w~~iF~~~i~~iN~~~Vk~fG 183 (541)
T COG0833 116 TRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPD------------TVPPWIWIAIFLVLIFLLNLFGVKGFG 183 (541)
T ss_pred hhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC------------CCChHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999988877642 123356777766665555 3556676
Q ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccc-cccchhhHHHHHHHHHHHHHHhcccchhHhhHhh
Q 011580 190 QLW-WLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIG-TVSETQKIWRSFQALGDIAFAYSYSIILIEIQDT 267 (482)
Q Consensus 190 ~l~-~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 267 (482)
... ++|.+-++.++.+.++.++. ...+..+ ++..-..-|. +-.....+.++...+-+..|||.|.+++--...|
T Consensus 184 E~Efw~s~iKV~~ii~Fii~gii~-~~Gg~~~---~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgE 259 (541)
T COG0833 184 ETEFWFSSIKVLTIIGFIILGIII-ICGGGPT---HGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGE 259 (541)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHH-hcCCCCC---CCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecc
Confidence 666 45666655555433322221 1111111 1111111122 1112233567778889999999999999999999
Q ss_pred hCCCCccccchhhHHHHHHHHHHHHHHHHHhHH-hh-hcCCC----------cccccccccccCCCchHHHHHHHHHHHH
Q 011580 268 VKSPPSESKTMKKASLISVGVTTLFYMLCGCFG-YA-AFGDL----------SPGNLLTGFGFYNPYWLLDIANAAIVIH 335 (482)
Q Consensus 268 m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~g-y~-~fG~~----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 335 (482)
-+||+ |.++|++.-...-..++|++.-+.- .. .|.|. ..+.....+....-..+..+.|..+.++
T Consensus 260 s~nP~---K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~s 336 (541)
T COG0833 260 SENPR---KSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTS 336 (541)
T ss_pred cCCch---hhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHH
Confidence 99998 8999999999999999998644332 22 33331 0111111111111123455666666666
Q ss_pred HHHhhhhcccchHHHHHHHhhhhCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhcc--chHHHHHHh
Q 011580 336 LVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLP--FFNDVVGLL 413 (482)
Q Consensus 336 ~~~s~pl~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip--~~~~v~~l~ 413 (482)
++.+=-=.++..-+.+..+....+-.+ +..+-++..+| ...+..+.++-+++++.+..-. -++-++++.
T Consensus 337 vlSa~NS~lYasSR~L~sLA~~g~APk-~f~~~~r~GvP--------~~al~vt~~fg~lafl~~~~~~~~vf~wL~~is 407 (541)
T COG0833 337 VLSAANSGLYASSRMLYSLAKQGKAPK-IFAKVDRRGVP--------LVALLVTLLFGLLAFLNSSFKETTVFNWLLNIS 407 (541)
T ss_pred HHHHhhccchHHHHHHHHHHhcCCCch-HHHhhCCCCCc--------hHHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 665544444444555555433222111 11222211233 5556777777777777776633 256666666
Q ss_pred hhhhhhhhHhhhhHHHHHHHhC
Q 011580 414 GALGFWPLTVYFPVEMYIAQKK 435 (482)
Q Consensus 414 Ga~~~~~l~~ilP~~~~l~~~~ 435 (482)
|.. .+++++-=++.|++.|+
T Consensus 408 g~s--~~i~W~~I~~shirFR~ 427 (541)
T COG0833 408 GLS--GFIAWGSICLSHIRFRR 427 (541)
T ss_pred HHH--HHHHHHHHHHHHHHHHH
Confidence 633 46777777778888664
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.38 E-value=1.1e-09 Score=113.26 Aligned_cols=253 Identities=15% Similarity=0.143 Sum_probs=165.3
Q ss_pred CCCCccccchHHH-HHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHH
Q 011580 30 DDGRLKRTGTLWT-ASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYV 108 (482)
Q Consensus 30 ~~~~~~~~~s~~~-a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~ 108 (482)
++++.+|+.+.++ ......++++|.|++.+|......+ ....+..++.+++....+....|..+. -|+.| .+.
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~-~p~~G----G~y 79 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSA-IPSAG----GAY 79 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC----Cee
Confidence 3345556667777 8888999999999999999998776 223333455666666666777776663 34445 344
Q ss_pred HHHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHH---HHHHHHhhcC
Q 011580 109 DAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAF---GIVEIVLSQI 185 (482)
Q Consensus 109 ~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~---~~i~~pl~~~ 185 (482)
+.+++.+||+.++.+.+..++.......+.....+..+..+++... ...... +..... ....+-+...
T Consensus 80 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~ln~ 150 (466)
T COG0531 80 AYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG--------LLSIGP-LLIILIALALIALLTLLNL 150 (466)
T ss_pred eehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--------hhcCCc-hHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999998888888888888887777665310 000000 222222 2223333345
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhH
Q 011580 186 PDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQ 265 (482)
Q Consensus 186 ~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~ 265 (482)
+..+...++..+..+..+...++.....+.....+. .+ .... .. ........+..++....++|.|.+.+.+..
T Consensus 151 ~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~-~~-~~~~--~~--~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a 224 (466)
T COG0531 151 RGIKASAKINSIITILKIIILLIFIILGLFAFGFSN-GN-LFAP--FN--PGGGSFGGILAAILLAFFAFTGFEAIATLA 224 (466)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-cc-cCCC--cc--cccchHHHHHHHHHHHHHHhhcHHHHHHHH
Confidence 556666666666555555433333333333322211 00 0000 00 011122356788999999999999999999
Q ss_pred hhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 011580 266 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGD 306 (482)
Q Consensus 266 ~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~ 306 (482)
+|+|||+ |+.+|++..++.++.++|++.........++
T Consensus 225 ~E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 225 EEVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 9999997 7899999999999999999988888777775
No 45
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.35 E-value=5.7e-09 Score=108.69 Aligned_cols=255 Identities=15% Similarity=0.036 Sum_probs=136.3
Q ss_pred ccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHH-HHHHHHHHHchhcCCCCCCcccccHHHHHH
Q 011580 34 LKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVT-YYTSTLLAACYRSGDPVTGKRNYTYVDAVR 112 (482)
Q Consensus 34 ~~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~-~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~ 112 (482)
.+|+.+.++.+...+++++|.+ .+|.++++.|.. +++..++.+++. ...+..+.|.....+...| .-.+..+
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG----G~Y~w~~ 77 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG----GIYSWMN 77 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC----cHHHHHH
Confidence 3567899999999999999976 568888888874 555665566554 3455667776555432234 3344567
Q ss_pred hhhcCcceeehHHHHHHHHHHHHHHHHHHhhh-hhHHhhhhccccCCCCCCCCccCCC-chhHHHHHH--HHHhhcCCCc
Q 011580 113 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSI-SMMAIERSNCFHSKGDKNPCHMNSN-PYMIAFGIV--EIVLSQIPDF 188 (482)
Q Consensus 113 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~-~~~~i~~~i--~~pl~~~~~l 188 (482)
+.+||+++++..+..+................ ....++.....+... .. ..... ...++..+. ++-....|.+
T Consensus 78 ~~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~a~~~~~~~t~vn~~g~ 154 (496)
T PRK15238 78 KSVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWH-FL--GLNSTQVVGILAVIWMILVTFVASKGI 154 (496)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhh-hh--cccchHHHHHHHHHHHHHHHHHHccch
Confidence 88999998877665443332222111100000 001111100000000 00 00111 111111111 2333456677
Q ss_pred chhHHHHHHHHHHHHHHHHHHH-HHHHHhhhhcCCCCCCcccccccc-c-cchhhHHHHHHHHHHHHHHhcccchhHhhH
Q 011580 189 DQLWWLSIVAAVMSFTYSTIGL-GLGIAKVAETGKFRGSLTGISIGT-V-SETQKIWRSFQALGDIAFAYSYSIILIEIQ 265 (482)
Q Consensus 189 ~~l~~~s~~~~~~~~~~~~i~i-~~~i~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~ 265 (482)
+..++++.++....+...++.+ ...+.........+.+....++.+ . +......+...++....|+|.|.+.+....
T Consensus 155 ~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a 234 (496)
T PRK15238 155 NKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLV 234 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 7777776655444332211111 111111111111111100000100 0 000011356677888999999999999999
Q ss_pred hhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHh
Q 011580 266 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGY 301 (482)
Q Consensus 266 ~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy 301 (482)
+|+|||+ |+++|++..+...+.++|.+..++..
T Consensus 235 ~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~~~~ 267 (496)
T PRK15238 235 DKTENPE---KNFPKGIIIAAIVISIGYSLAIFLWG 267 (496)
T ss_pred HhccCCC---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999997 89999999999999999998655443
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.33 E-value=1.2e-08 Score=105.86 Aligned_cols=259 Identities=12% Similarity=-0.028 Sum_probs=148.8
Q ss_pred CccccchHHHHHHHHHhhh-hhhhhhHHHH-HHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHH
Q 011580 33 RLKRTGTLWTASAHIITAV-IGSGVLSLAW-ATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDA 110 (482)
Q Consensus 33 ~~~~~~s~~~a~~~l~~~~-iG~GiLslP~-af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l 110 (482)
+.+|+.+.++.+..-++.+ +|+|+.+++. +..+.|- ..+...++.++.....+..+.|...+.+ ..| .....
T Consensus 10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P-~aG----G~Y~~ 83 (475)
T TIGR03428 10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYP-ISG----AIYQW 83 (475)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCC----CHHHH
Confidence 5778889999998888875 8999977654 4455665 4566788888888888888888666543 445 33445
Q ss_pred HHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCc-cCCC--chhHH-HHHHHHHhhcCC
Q 011580 111 VRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCH-MNSN--PYMIA-FGIVEIVLSQIP 186 (482)
Q Consensus 111 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~-~~~~--~~~~i-~~~i~~pl~~~~ 186 (482)
+++.+||...+++.+..++................+..+.+... ..+.+.... .... .+.+. ..+++.-+...+
T Consensus 84 ~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~ 161 (475)
T TIGR03428 84 SRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQ--IIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCI 161 (475)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hcccCccccCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999988876655554444444444433322110 000000000 0011 11221 112222223444
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHh
Q 011580 187 DFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQD 266 (482)
Q Consensus 187 ~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 266 (482)
..|...++..+..+..+...+++++...... ++.+.. ..+. .+++. .+.....+..+.....|+|.|.+.+..+.+
T Consensus 162 g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~-~~~~~~-~f~~-~~~~~-~~~~~~~~~~~~~~~~~~f~G~e~~~~~ae 237 (475)
T TIGR03428 162 GVEWMSRVNTIGVTCEIVGVLAVIGVLFTHA-QRGPGV-VFDT-SVTGA-SPGYYGAFLVSGLMAAYVMVGFGSAGELSE 237 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcce-eeec-CCCCC-CccHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 5566666655555444332222222222111 111100 0000 01000 011123445566777899999999999999
Q ss_pred hhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 011580 267 TVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGD 306 (482)
Q Consensus 267 ~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~ 306 (482)
|+|||+ |+.+|++..+..+..++|.+.-+......++
T Consensus 238 E~knP~---r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~ 274 (475)
T TIGR03428 238 ETKNPR---RVAPRTILTALSVSALGGGLMILGALMAAPS 274 (475)
T ss_pred HhcCcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999998 8999999999998887776655554444443
No 47
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.30 E-value=1.1e-08 Score=106.37 Aligned_cols=247 Identities=10% Similarity=-0.037 Sum_probs=135.3
Q ss_pred CccccchHHHHHHHHHhhhhh--hhhhH-HHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHH
Q 011580 33 RLKRTGTLWTASAHIITAVIG--SGVLS-LAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVD 109 (482)
Q Consensus 33 ~~~~~~s~~~a~~~l~~~~iG--~GiLs-lP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~ 109 (482)
+.+|+.+.++.+..-+.. +| +|+.. .+.+.++.|....+...++.+++....+..+.|...+.+ +.| ...+
T Consensus 9 ~l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P-~~G----g~y~ 82 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYP-TSG----GQYF 82 (482)
T ss_pred eeecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCC-CCc----cHHH
Confidence 467778888887777774 44 66643 556777788765677788889999999999999766543 444 3344
Q ss_pred HHHhhhcC----cceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCch-hHHH--HHHHHHh
Q 011580 110 AVRSNLGG----FQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPY-MIAF--GIVEIVL 182 (482)
Q Consensus 110 l~~~~~G~----~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~-~~i~--~~i~~pl 182 (482)
.+++.+|+ ...+++.+..++.....+.+.....++++........ + .+ ... ...+. .++. .++++-+
T Consensus 83 ~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~-~~---~~~-~~~~~~~~i~~~~~~~~~~ 156 (482)
T TIGR00907 83 WSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTT-P-GR---EYI-PTRWHIFGIMIGIHLIHAL 156 (482)
T ss_pred HHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C-CC---Ccc-ccCchhhhhHHHHHHHHHH
Confidence 45666664 4566667767666666666666666666655443110 0 00 000 11121 1111 1122222
Q ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccch-----hhHHHHHHHHHHHHHHhcc
Q 011580 183 SQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSET-----QKIWRSFQALGDIAFAYSY 257 (482)
Q Consensus 183 ~~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~faf~~ 257 (482)
...+..|.+..+..+..+..+...++++...+.....+. .+.+ ..+++..+. ...+....++....|+|.|
T Consensus 157 in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~-~~~~---~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G 232 (482)
T TIGR00907 157 INSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKF-NDGK---FVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTG 232 (482)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCC-CChh---hhheeeeCCCCCcCCCchhhhhhhhhhHHHhcC
Confidence 333344444444433333322211111111111110000 0000 001110000 1113455666667899999
Q ss_pred cchhHhhHhhhCCCCccccchhhHHHHHHHHHHHHHHHHHh
Q 011580 258 SIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGC 298 (482)
Q Consensus 258 ~~~i~~i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~ 298 (482)
.+......+|+|||+ |+++|++..+..+..++|.+..+
T Consensus 233 ~e~~~~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~~~~l 270 (482)
T TIGR00907 233 YDGTAHMAEEIENPE---VVGPRAIIGAVAIGIVTGFCFNI 270 (482)
T ss_pred cchhhHHHHhcCChh---hhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997 89999999998877765544333
No 48
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.29 E-value=4.6e-09 Score=109.36 Aligned_cols=240 Identities=10% Similarity=-0.028 Sum_probs=125.4
Q ss_pred cccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHH--HHHHHHHHHchhcCCCCCCcccccHHHHHH
Q 011580 35 KRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVT--YYTSTLLAACYRSGDPVTGKRNYTYVDAVR 112 (482)
Q Consensus 35 ~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~--~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~ 112 (482)
+||.+.++.+...+.++. ++-.+| .+++.|+ +.+...+.+.+. .-.+....|.....++.+| ....-++
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G----G~y~wv~ 73 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEG----GIFAWVS 73 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC----Ceeeehh
Confidence 455788887777777775 557888 5777774 444445554444 3356666776554322334 2333458
Q ss_pred hhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHH---HHHHhhcCCCcc
Q 011580 113 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGI---VEIVLSQIPDFD 189 (482)
Q Consensus 113 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~---i~~pl~~~~~l~ 189 (482)
+.+|++++++..+..|+.......+........+...... + ... ...++..+..+ ..+-+...+..|
T Consensus 74 ~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~---~------~~~-~~~~~~~i~~l~i~~~~t~~n~~G~k 143 (507)
T TIGR00910 74 NTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKF---P------ALN-EDPIIKFIAALIIFWALAFSQFGGTK 143 (507)
T ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---c------hhc-cCcHHHHHHHHHHHHHHHHHHHhhhH
Confidence 8899999998877777755432222221111112222110 0 000 11222222222 222233444555
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhh
Q 011580 190 QLWWLSIVAAVMSFTY-STIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTV 268 (482)
Q Consensus 190 ~l~~~s~~~~~~~~~~-~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m 268 (482)
...+++.++....... .+++++..+.....+.+...+.+ .++..+..+..+....+..+.|+|.|.+......+|+
T Consensus 144 ~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~---~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~ 220 (507)
T TIGR00910 144 RTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEID---SHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINEL 220 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCc---HHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHc
Confidence 5555444433222221 11122222222222211111100 0111111111223344555689999999999999999
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHHhH
Q 011580 269 KSPPSESKTMKKASLISVGVTTLFYMLCGCF 299 (482)
Q Consensus 269 ~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~ 299 (482)
|||+ |+++|++..++.++.++|.+..+.
T Consensus 221 knP~---r~~PrAi~~~~i~~~~l~~l~~~~ 248 (507)
T TIGR00910 221 ENPG---RDYPLAMILLMIAAICLDAIGGFS 248 (507)
T ss_pred cCCc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 9997 899999999999999999875543
No 49
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.26 E-value=1.5e-08 Score=105.01 Aligned_cols=247 Identities=13% Similarity=0.030 Sum_probs=123.2
Q ss_pred chHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHH-HHHHHHHHchhcCCCCCCcccccHHHHHHhhhc
Q 011580 38 GTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTY-YTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLG 116 (482)
Q Consensus 38 ~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~-~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G 116 (482)
.+.++.++..+.+++| +-.+|.+ ++.|.. .++..++.+++.. -.+....|.....+ +.| ...+.+++.+|
T Consensus 3 ~~~~~l~~~~~~~v~~--~~~~~~~-a~~G~~-~~~~~~i~~~~~~ip~al~~aEL~~~~P-~~G----G~y~~~~~a~G 73 (474)
T TIGR03813 3 LTVVTLAIMNITAVVS--LRGLPAE-AEYGLS-AAFYYLFAAIFFLVPVSLVAAELATAWP-EKG----GVFRWVGEAFG 73 (474)
T ss_pred ccHHHHHHHHHHHHHH--hhcchHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHccCC-CCC----CceeeHhhhcC
Confidence 4555555555455544 4555755 567753 4444444444433 35666667555433 334 33345688999
Q ss_pred CcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHH---HHHhhcCCCcchhHH
Q 011580 117 GFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIV---EIVLSQIPDFDQLWW 193 (482)
Q Consensus 117 ~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i---~~pl~~~~~l~~l~~ 193 (482)
++++++..+..++.......+-+...+..+....... ...+ . .....++.....++ ..-+...+..|..+.
T Consensus 74 ~~~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~---~-~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~ 147 (474)
T TIGR03813 74 ARWGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEA--TVDE---S-LAGNKLYVLVSVLFVYWLATFIALRGVAAFTK 147 (474)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--ccCc---c-cccccHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 9999999988887664322221112222221111100 0000 0 00112222222222 223345566666655
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchh-hHHHHHHHHHHHHHHhcccchhHhhHhhhCCC
Q 011580 194 LSIVAAVM-SFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQ-KIWRSFQALGDIAFAYSYSIILIEIQDTVKSP 271 (482)
Q Consensus 194 ~s~~~~~~-~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 271 (482)
++.+.... .+...++.+...+.......+.+ .+.++++..+.. ++.+... ...+.|+|.|.+.+....+|+|||
T Consensus 148 i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~---~~~~~~~~~p~~~~~~~~~~-~~~~~~af~G~e~~~~~a~E~knP 223 (474)
T TIGR03813 148 VAKWGGIVGTIIPAAILVILGISYLLTGGESQ---IPLRWDDAFPDFTNFDNVVL-AASIFLFYAGMEMNAVHVKDVDNP 223 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---CCCCHHHhCCCccccccHHH-HHHHHHHHhchhHhHHHHHhccCc
Confidence 55443221 11111112222222211111111 011111111111 1122222 234678999999999999999999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 011580 272 PSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGD 306 (482)
Q Consensus 272 ~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~ 306 (482)
+ |+.+|++..+..++.++|++..+.-....++
T Consensus 224 ~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~ 255 (474)
T TIGR03813 224 D---KNYPIAILIAALGTVLIFVLGTLAIAFIIPR 255 (474)
T ss_pred c---cchhHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 7 8999999999999999999866655444443
No 50
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.14 E-value=2.5e-09 Score=110.54 Aligned_cols=376 Identities=14% Similarity=0.018 Sum_probs=223.7
Q ss_pred CCccccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHH
Q 011580 32 GRLKRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDA 110 (482)
Q Consensus 32 ~~~~~~~s~~~a~~~l~~~~iG~Gi-LslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l 110 (482)
.+.+|+.+.++..+.-++++||+|+ .....+.++.|-..-++..++.+.....++.-+.|-.-+.+...| ++...
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aG----s~~~y 101 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAG----SFYTY 101 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccc----cceee
Confidence 4678889999999999999999999 568888998888877777888889999999999986655432113 34444
Q ss_pred HHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccC-CCchhH-HHHHHHHHhhcCCCc
Q 011580 111 VRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMN-SNPYMI-AFGIVEIVLSQIPDF 188 (482)
Q Consensus 111 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~-~~~~~~-i~~~i~~pl~~~~~l 188 (482)
+++.+|+.+.+++.+-.++.....+.+.....+.+++.+.. . .......+ ..+ ..++.. +..++++.+...+-.
T Consensus 102 a~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~-~-~~~~~~~~--~~~~~~~~~~fla~~v~in~~gv~~~ 177 (554)
T KOG1286|consen 102 AYRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG-A-SLIGILVD--TVNPGGWIPDFLAFILIINLFGVLAY 177 (554)
T ss_pred eeeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-c-cccccccc--CCCCCccHHHHHHHHHHHHHHHHhhc
Confidence 57889999999999999999999999999999999988761 0 00000000 111 122222 223334444444443
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCCCCCCcccc-cccc--ccchhhHHHHHHHHHHHHHHhcccchhHhh
Q 011580 189 DQLWWLSIVAAVMSFTYSTIGLGLGIAK-VAETGKFRGSLTGI-SIGT--VSETQKIWRSFQALGDIAFAYSYSIILIEI 264 (482)
Q Consensus 189 ~~l~~~s~~~~~~~~~~~~i~i~~~i~~-~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~faf~~~~~i~~i 264 (482)
-..++.....-+.++.-.+ ++..++.. ...++.. + ..+. .|++ ...+..+.++..++.+..|+|.|-..+-..
T Consensus 178 ge~ef~~~~~kvl~~v~~~-Il~iVi~~G~~~~d~~-~-~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~ 254 (554)
T KOG1286|consen 178 GEVEFSLAFNKILTAVGFI-ILAIVIIAGGGPADVK-N-WIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATT 254 (554)
T ss_pred cceeehHHHHHHHHHHHHH-HhheeeecCCCcCCcC-C-CcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHH
Confidence 4444333333222222111 11111111 1111110 1 1111 1221 011112557789999999999999999999
Q ss_pred HhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhh--cCC-Cccccccccccc------CCCchHHHHHHHHHHHH
Q 011580 265 QDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA--FGD-LSPGNLLTGFGF------YNPYWLLDIANAAIVIH 335 (482)
Q Consensus 265 ~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~--fG~-~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~ 335 (482)
.+|-|||+ |+.++++..++..++++|++..+.--+. |.+ +..++....-|+ .....+..+.++...+.
T Consensus 255 a~E~kNP~---k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~ 331 (554)
T KOG1286|consen 255 AEEAKNPR---KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIG 331 (554)
T ss_pred HHhccCCc---ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHH
Confidence 99999998 8999999999999999999877654432 222 111111111111 01122334788888888
Q ss_pred HHHhhhhcccchHHHHHHHhhhhCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhcc-----chHHHH
Q 011580 336 LVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLP-----FFNDVV 410 (482)
Q Consensus 336 ~~~s~pl~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip-----~~~~v~ 410 (482)
+..+---.+++.-+.+..+...+.-.+ +..+-++...| +....+..+...+.+.... .++.++
T Consensus 332 ~~s~~n~~~y~~sR~l~amA~~G~~Pk-~f~~v~~~g~P-----------~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~ 399 (554)
T KOG1286|consen 332 LLSSLNSSLYAGSRVLYALAKDGLAPK-FFARVDRRGVP-----------LVAVLVSGLFGALAALNFSLGAATVFNWLV 399 (554)
T ss_pred HHHHHHHHhHHhHHHHHHHHhcCCcch-HHhhcCCCCCc-----------hhHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 888877777777677666543221111 01111111222 2222233333333333332 267777
Q ss_pred HHhhhhhhhhhHhhhhHHHHHHHhC
Q 011580 411 GLLGALGFWPLTVYFPVEMYIAQKK 435 (482)
Q Consensus 411 ~l~Ga~~~~~l~~ilP~~~~l~~~~ 435 (482)
++.|. ++.+++.+=++.|++.|+
T Consensus 400 ~~~si--~tl~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 400 NLSSI--GTLFAWTLVALSHLRFRY 422 (554)
T ss_pred HHHhH--HHHHHHHHHHHHHeeeee
Confidence 87763 456777777777777664
No 51
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.11 E-value=1e-09 Score=113.92 Aligned_cols=244 Identities=18% Similarity=0.131 Sum_probs=152.1
Q ss_pred HHhhhhhhhh-hHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcCcceeehHH
Q 011580 47 IITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGL 125 (482)
Q Consensus 47 l~~~~iG~Gi-LslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~i~~~ 125 (482)
-+.+++|+|+ +..+.+..+.|....++..++.+++...++.-+.|..++.+ +.| .+.+.+++.+|+..+..+.+
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p-~~G----g~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP-SAG----GFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc-ccc----chhhhhhhccCCcCCceeeH
Confidence 4678899999 45888999999987888899999999999999999777644 444 55667789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHh--hhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHHHHHHHHHH
Q 011580 126 VQYLNLFGVAIGYTIASSISMMAI--ERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSF 203 (482)
Q Consensus 126 ~~~~~~~g~~~~y~i~~~~~l~~i--~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 203 (482)
..++.............+..++.. .+.. + ....+.. .+..++.+++. +......+.-..+...-....+
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~-~~~~i~~~~~~-~l~~~gv~~~~~~~~~~~~i~~ 151 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFPGL-----P--STWVWGI-LIAIIFILLIT-LLNLFGVRVSGKIEFILTIIKL 151 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccc-----c--ccccccc-hhhhhhhhhhh-hhhhhhhhccchHHHHHHHHhh
Confidence 988887777777776666655544 2210 0 0000000 11222222222 2222233333332222222222
Q ss_pred HHHHHHHHHH-HHhhhhcCCCCC---Ccccccccc-cc------chhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCCC
Q 011580 204 TYSTIGLGLG-IAKVAETGKFRG---SLTGISIGT-VS------ETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPP 272 (482)
Q Consensus 204 ~~~~i~i~~~-i~~~~~~~~~~~---~~~~~~~~~-~~------~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~ 272 (482)
...+..+... +.......+.+. ..+.. ..+ .. ...++.+++.++....++|.|.+.+....+|.|||+
T Consensus 152 ~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~ 230 (478)
T PF00324_consen 152 IALIAFIIVGVIILFFGGGPSNGRYWGDPGS-FANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR 230 (478)
T ss_pred hHhhhhhhhcccccccccCCCcccccccccc-cccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch
Confidence 2111111111 111112122111 00000 000 01 112355788999999999999999999999999997
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCc
Q 011580 273 SESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS 308 (482)
Q Consensus 273 ~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~ 308 (482)
|+++|++..++....++|++.....-...+.+.
T Consensus 231 ---k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 231 ---KTIPRATLLSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred ---hhhhhHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence 899999999999999999988887766666543
No 52
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.06 E-value=9.7e-08 Score=93.72 Aligned_cols=237 Identities=16% Similarity=0.080 Sum_probs=162.5
Q ss_pred cchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhc
Q 011580 37 TGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLG 116 (482)
Q Consensus 37 ~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G 116 (482)
|.|..|.+..++.+++|+|++.+|....+.+- .|.+..++.+........+..+..++.+.+ +..|..++.+|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~------~l~~~~~~~~G 73 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPGK------TLVEISEKLFG 73 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CHHHHHHHHhC
Confidence 46889999999999999999999999876652 555566666666666666666655543322 99999999999
Q ss_pred CcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHHH
Q 011580 117 GFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSI 196 (482)
Q Consensus 117 ~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 196 (482)
|+.++++.+...+..+......+...++.+....- + +. ..+......+++......+.++.+.+.+.
T Consensus 74 k~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l----p--------~T-P~~~i~~~~ll~~~y~a~~G~e~i~R~~~ 140 (320)
T PF03845_consen 74 KWLGKIINLLYILYFLLISALVLREFSEFIKTYLL----P--------ET-PIWVIILLFLLVAAYAARKGIEVIARVAE 140 (320)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C--------cC-CHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999988888888877777777777765442 1 11 12222333334444456678888887555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCCCcccc
Q 011580 197 VAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESK 276 (482)
Q Consensus 197 ~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~ 276 (482)
+-....+...+... ....++.+.+.-.| . .+.++.+...+.....+.|.+...+.-+...+|+| |
T Consensus 141 ~~~~~~~i~~~~i~----~~~~~~~~~~~l~P------~-~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~----~ 205 (320)
T PF03845_consen 141 ILFPIFLILLLLIL----LLSIPNIDWDNLLP------V-LESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK----K 205 (320)
T ss_pred HHHHHHHHHHHHHH----HHhcccCCHHHeeC------c-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----h
Confidence 54444433222111 11122221111111 1 12234466777778888898888888889999988 6
Q ss_pred chhhHHHHHHHHHHHHHHHHHhHHhhhcCCCc
Q 011580 277 TMKKASLISVGVTTLFYMLCGCFGYAAFGDLS 308 (482)
Q Consensus 277 ~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~ 308 (482)
+.+|....+..++.++|...-+.....||.+.
T Consensus 206 ~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~ 237 (320)
T PF03845_consen 206 KLKKSLLIAILISGLFLLFIIFITIGVFGPEL 237 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 78999999999999999999999999999753
No 53
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.81 E-value=3.2e-08 Score=85.96 Aligned_cols=216 Identities=15% Similarity=0.262 Sum_probs=129.4
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhc-------------CC------------
Q 011580 43 ASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRS-------------GD------------ 97 (482)
Q Consensus 43 a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~-------------~~------------ 97 (482)
...-++|-++|+|.|++|.+|+.+||++++.++.+.+.+++.+..+++++... .+
T Consensus 17 gllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd~ 96 (319)
T KOG3832|consen 17 GLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASDD 96 (319)
T ss_pred hHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCCC
Confidence 34556799999999999999999999999999999999999999999985510 00
Q ss_pred --------CCCCc------------------ccccHHHHHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhh
Q 011580 98 --------PVTGK------------------RNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIER 151 (482)
Q Consensus 98 --------~~~g~------------------~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~ 151 (482)
++.++ +....++++...|.|.+-.+..++++++++|-...|....-...-++.-
T Consensus 97 dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~itc 176 (319)
T KOG3832|consen 97 DVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNITC 176 (319)
T ss_pred cEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhhhh
Confidence 00000 1125778888889999999999999999999999998776655555542
Q ss_pred hccccCC-C-CCCCCccC--------------CCchhHHHHH-HHHHhhc--CCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 011580 152 SNCFHSK-G-DKNPCHMN--------------SNPYMIAFGI-VEIVLSQ--IPDFDQLWWLSIVAAVMSFTYSTIGLGL 212 (482)
Q Consensus 152 ~~~~~~~-~-~~~~~~~~--------------~~~~~~i~~~-i~~pl~~--~~~l~~l~~~s~~~~~~~~~~~~i~i~~ 212 (482)
.-.-... + ..++|.-+ +++++.++.+ +.+|+.+ +.+-+.++....+.-+..+. ..+.+
T Consensus 177 aa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~diqktk~iqiltslmrw~~~~---~g~~l 253 (319)
T KOG3832|consen 177 AAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFADIQKTKHIQILTSLMRWAAFI---LGISL 253 (319)
T ss_pred hhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEeccccchhHHHHHHHHHHHhcc---chhhh
Confidence 1100000 0 11122111 1233333333 2335443 23344444444444433321 22221
Q ss_pred HHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhcccchhHhhHhhhCCC
Q 011580 213 GIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSP 271 (482)
Q Consensus 213 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 271 (482)
.-.+.-++. ... .++...+-++-..++..+|+|.+|++.|.....++..
T Consensus 254 ~tmqaeeda-a~a---------~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k 302 (319)
T KOG3832|consen 254 ATMQAEEDA-AAA---------HPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTK 302 (319)
T ss_pred hhhhhcccc-ccc---------CCccccccccccccchhhHHHHhhccCCCCCCCCeec
Confidence 111211111 000 1122222244466788899999999999988877644
No 54
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.67 E-value=1.3e-05 Score=80.70 Aligned_cols=259 Identities=14% Similarity=0.055 Sum_probs=129.2
Q ss_pred cccchHHHH---HHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHH
Q 011580 35 KRTGTLWTA---SAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAV 111 (482)
Q Consensus 35 ~~~~s~~~a---~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~ 111 (482)
+|.-++++. .+.+++..-|. .-++.+....+|...-.-..++.+......+.-|.|.....+ ..|.- |-- +
T Consensus 47 ~R~fs~~s~fg~sFs~~g~~~~i-~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~P-tsGgL---y~w-a 120 (550)
T KOG1289|consen 47 KREFSLFSIFGISFSLMGLLPGI-ATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMP-TSGGL---YFW-A 120 (550)
T ss_pred hhhhhHHHHHHHHHHHhcchhhh-hhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCC-CCCcH---HHH-H
Confidence 555555443 34555544332 145666666566543333467777777888888888555443 33432 222 2
Q ss_pred HhhhcCcceeehHHHH-HHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcC--CCc
Q 011580 112 RSNLGGFQVKICGLVQ-YLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQI--PDF 188 (482)
Q Consensus 112 ~~~~G~~~~~i~~~~~-~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--~~l 188 (482)
...-+|+++.+..+.. +...+|............-+.++...... +......+.....+...+.+..+++ .--
T Consensus 121 a~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~----np~y~~~~~~~~~v~~ai~~v~~lln~~p~ 196 (550)
T KOG1289|consen 121 AVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLT----NPNYEPTNYHQFGVFEAILFVHGLLNSLPT 196 (550)
T ss_pred HHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhc----CCCCcccceEeehHHHHHHHHHHHHhcCCc
Confidence 2233555554444422 33333333322222222222222211111 1111112222223333333333222 224
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccc-ccccccchh-hHHHHHHHHHHHHHHhcccchhHhhHh
Q 011580 189 DQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGI-SIGTVSETQ-KIWRSFQALGDIAFAYSYSIILIEIQD 266 (482)
Q Consensus 189 ~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~faf~~~~~i~~i~~ 266 (482)
+.+++++-++....++..++.+..+......+.+++.....+ ++.+-+... ..|.+..++-.-.+++.|-.....+.+
T Consensus 197 r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aE 276 (550)
T KOG1289|consen 197 RVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAE 276 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHH
Confidence 566666666666655544433333333322222222111111 011111122 345666777778888999999999999
Q ss_pred hhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 011580 267 TVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGD 306 (482)
Q Consensus 267 ~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~ 306 (482)
|.||++ |+.+|++..+..+..++=..+-+.-...-++
T Consensus 277 E~~nAs---k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 277 ETKNAS---KAAPRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred Hhcchh---hhccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999998 7899999999988887766555555555564
No 55
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.53 E-value=0.00017 Score=73.99 Aligned_cols=191 Identities=15% Similarity=0.116 Sum_probs=110.4
Q ss_pred cHHHHHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCC-CccCCCchhHHHHHHHHHhhc
Q 011580 106 TYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNP-CHMNSNPYMIAFGIVEIVLSQ 184 (482)
Q Consensus 106 ~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~-~~~~~~~~~~i~~~i~~pl~~ 184 (482)
++..+.|..||.++..+..++..+...|-........++.+..+++....+... ..+ .........+++..+.+++..
T Consensus 77 ~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~-~~~~~t~~~~~~~~i~~~l~~~~~~ 155 (442)
T TIGR00800 77 PFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLH-LGNGMTTLELICFIIFWALVLVFLF 155 (442)
T ss_pred CcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccc-cCCcccHHHHHHHHHHHHHHHHHHH
Confidence 677788999999999999999999999999999999999998888753211000 000 000011222344555555555
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHh-cccchhHh
Q 011580 185 IPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAY-SYSIILIE 263 (482)
Q Consensus 185 ~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~i~~ 263 (482)
....+..+.....+....+... ...++...+..... +.... .....+....+.+..+++..+-.+ ..-.+.+.
T Consensus 156 ~~g~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~g~~-~~~~~-~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~D 229 (442)
T TIGR00800 156 FFGYKIRHLFEWLAVVPPFAAF----GMLIWALSKAHGKG-PLGEL-TGTLHGSTGAWAFLYALSLVIGSFATWATNAPD 229 (442)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCCC-ccccC-CCCCCcchhHHHHHHHHHHHHHHHHHHHcCchh
Confidence 5555555555555544433211 11111212211110 00000 000112233456666655544333 45567899
Q ss_pred hHhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhh----cCCC
Q 011580 264 IQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA----FGDL 307 (482)
Q Consensus 264 i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~----fG~~ 307 (482)
..+.+|++ |+-.+....++....+....+|+.+... +|+.
T Consensus 230 ysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~ 273 (442)
T TIGR00800 230 FTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEP 273 (442)
T ss_pred hhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999988 4455667778888888888888888776 7764
No 56
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.48 E-value=0.00012 Score=69.35 Aligned_cols=134 Identities=11% Similarity=0.099 Sum_probs=99.2
Q ss_pred HHHHHHHHHhhhhhhhhhH---HHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhc
Q 011580 40 LWTASAHIITAVIGSGVLS---LAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLG 116 (482)
Q Consensus 40 ~~~a~~~l~~~~iG~GiLs---lP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G 116 (482)
.....+..+.+++|+|-=+ +=.-|..-|+. |+.-.++.+.+-..++..+.+..++.+.+ +|+|.-++.+|
T Consensus 5 ~~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~a~------~y~~~~~~v~~ 77 (349)
T COG3949 5 FMRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFNAT------SYREILKYVSG 77 (349)
T ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhccc------chHHHHHHHhh
Confidence 3445566778999999766 33445556665 77777888888888888888877765543 99999999999
Q ss_pred CcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchh-HHHHHHHHHhhcCCCcchhHHHH
Q 011580 117 GFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYM-IAFGIVEIVLSQIPDFDQLWWLS 195 (482)
Q Consensus 117 ~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~-~i~~~i~~pl~~~~~l~~l~~~s 195 (482)
|+...+.|+.+.+.+++.++.-+...|..+++.++- + .|+- ++...++..+.+.++.+.+-.+.
T Consensus 78 ~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~l--------------P-~wiGali~i~~v~i~lfl~~vegi~tvn 142 (349)
T COG3949 78 PKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL--------------P-YWIGALIIILLVLILLFLGRVEGIITVN 142 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCc--------------c-HHHHHHHHHHHHHHHHHHhcccceeeeh
Confidence 999999999999999999999998888888877652 1 2333 44444555555666666665543
No 57
>PRK11375 allantoin permease; Provisional
Probab=98.35 E-value=0.002 Score=66.69 Aligned_cols=194 Identities=9% Similarity=0.034 Sum_probs=103.1
Q ss_pred ccHHHHHHhhhcCcceeehHHHHH-HHHHHHHHHHHHHhhhhhHHhhhhcccc--CCCCCCC-CccCCCchh--HHHHHH
Q 011580 105 YTYVDAVRSNLGGFQVKICGLVQY-LNLFGVAIGYTIASSISMMAIERSNCFH--SKGDKNP-CHMNSNPYM--IAFGIV 178 (482)
Q Consensus 105 ~~y~~l~~~~~G~~~~~i~~~~~~-~~~~g~~~~y~i~~~~~l~~i~~~~~~~--~~~~~~~-~~~~~~~~~--~i~~~i 178 (482)
.++.-+.+..||.+|.++..+... +..+|-........++.+..+++...++ ..+++.+ ...+...++ +++.++
T Consensus 89 l~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l 168 (484)
T PRK11375 89 VPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLV 168 (484)
T ss_pred CChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHH
Confidence 388899999999999888888874 5666777777777888887776543211 1111100 011111122 234444
Q ss_pred HHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHhc-c
Q 011580 179 EIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYS-Y 257 (482)
Q Consensus 179 ~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~-~ 257 (482)
..++. ....+.++++..++....+...+......+... ..+.......-+........+.+..++...+-++. .
T Consensus 169 ~~~~~-~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~ 243 (484)
T PRK11375 169 NVGIG-FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLV----GIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAP 243 (484)
T ss_pred HHHHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHH
Confidence 44444 355777777777766665443322222222221 11100000000001111223455555555555554 4
Q ss_pred cchhHhhHhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHH----hhhcCCC
Q 011580 258 SIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFG----YAAFGDL 307 (482)
Q Consensus 258 ~~~i~~i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~g----y~~fG~~ 307 (482)
-.+.|...|..|++ |+-.+...++..+...+...+|+.. ...||..
T Consensus 244 ~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~ 293 (484)
T PRK11375 244 AVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGAD 293 (484)
T ss_pred HccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55889999999888 5555666666666666655455443 3466654
No 58
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.21 E-value=0.005 Score=61.96 Aligned_cols=227 Identities=13% Similarity=0.102 Sum_probs=128.7
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcCcc
Q 011580 40 LWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQ 119 (482)
Q Consensus 40 ~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~ 119 (482)
|....+++.+-.+|+.... .++..++...++-.++...-.-+...... +.| .++.-+.|..||++|
T Consensus 7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~----~~G---l~~~v~sR~~FG~~G 72 (386)
T TIGR02358 7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGA----DTG---LSAMGSLKLSLGSKG 72 (386)
T ss_pred HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccC---cCHHHHHHHHHccch
Confidence 4556666666666654321 34444444444443333333333333222 233 378889999999999
Q ss_pred eeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHHHHHH
Q 011580 120 VKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAA 199 (482)
Q Consensus 120 ~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 199 (482)
..+..+...+...|--.......++.+..+.+..... .+...+.++.+++..+.+. ...+.++++..++.
T Consensus 73 s~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~---------~~~~~~~~i~~~l~~~~~~-~G~~~i~~~~~~~~ 142 (386)
T TIGR02358 73 SVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE---------ESPMLWILIVGILVTLWLL-SGPLAFVWLNNWSV 142 (386)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 9999999999999999988999999999888642110 0112233344443444443 45677777777776
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHH-hcccchhHhhHhhhCCCCccccch
Q 011580 200 VMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFA-YSYSIILIEIQDTVKSPPSESKTM 278 (482)
Q Consensus 200 ~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~i~~i~~~m~~p~~~~~~~ 278 (482)
.+.....+...+....+ .+.+...+ .+.. ..+..+++...-. -......++..+..|+| |+.
T Consensus 143 ~~~~i~~~~~~~~~~~~----~~~~~~~~------~~~~---~s~~~~~~~~~~~~~swa~~~~DysRy~k~~----~~~ 205 (386)
T TIGR02358 143 WLLLIATLWLLVVVFSK----ADLSELWN------RAGD---MSFAVAVELVIAMPLSWLPLIADYTRFARNP----RHV 205 (386)
T ss_pred HHHHHHHHHHHHHHHhc----cchhhhcC------CCCC---ccHHHHHHHHHHHHHHHHHHccchhhhcCCC----cce
Confidence 66554332222211111 11100000 0001 1222222222211 12234478888888877 667
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhhhcCCC
Q 011580 279 KKASLISVGVTTLFYMLCGCFGYAAFGDL 307 (482)
Q Consensus 279 ~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~ 307 (482)
.....++..+...+..++|.....+.++.
T Consensus 206 ~~~~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 206 FLGTVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 77888888888888889998887776654
No 59
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.12 E-value=0.017 Score=59.84 Aligned_cols=154 Identities=9% Similarity=0.055 Sum_probs=99.1
Q ss_pred CccccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhhHHHHHH--HHHHHH-HHHHHHHHHchhcCCCCCCcccccHH
Q 011580 33 RLKRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMF--LFSFVT-YYTSTLLAACYRSGDPVTGKRNYTYV 108 (482)
Q Consensus 33 ~~~~~~s~~~a~~~l~~~~iG~Gi-LslP~af~~~G~~~gii~~~--~~~~~~-~~t~~~l~~~~~~~~~~~g~~~~~y~ 108 (482)
...|+.+++.....+..+.+|++. ++.|-...+.|+........ ..+.+. ..-+..+.+..++. + ..|..
T Consensus 37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~T~~ 110 (471)
T TIGR02119 37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY----N--AITIN 110 (471)
T ss_pred EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C--CccHH
Confidence 346778899999999999998877 56888777788632111110 011110 11122222222322 2 34999
Q ss_pred HHHHhhhcCc-ceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCC
Q 011580 109 DAVRSNLGGF-QVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPD 187 (482)
Q Consensus 109 ~l~~~~~G~~-~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~ 187 (482)
|.-++-||++ .+++..+...+..++...+.+...+..++.+++ ++....+++.++++........
T Consensus 111 e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GG 176 (471)
T TIGR02119 111 DVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------------LSYLTALFIFSSSVLIYTTFGG 176 (471)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhh
Confidence 9999999965 467777777777777777777777877777764 2223344555666777778888
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 011580 188 FDQLWWLSIVAAVMSFTYS 206 (482)
Q Consensus 188 l~~l~~~s~~~~~~~~~~~ 206 (482)
++...+...+.....+...
T Consensus 177 ~~av~~td~iQ~~v~~~~~ 195 (471)
T TIGR02119 177 FRAVALTDAIQGIVMFTGT 195 (471)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999888876665433
No 60
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.08 E-value=0.02 Score=59.52 Aligned_cols=154 Identities=12% Similarity=0.060 Sum_probs=94.8
Q ss_pred CccccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhhHHHHH---HHHHHHHHHHHHHHHHchhcCCCCCCcccccHH
Q 011580 33 RLKRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVM---FLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYV 108 (482)
Q Consensus 33 ~~~~~~s~~~a~~~l~~~~iG~Gi-LslP~af~~~G~~~gii~~---~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~ 108 (482)
...|+.+++...+.+..+.+|++. ++.|....+.|+....... ....+...+-+..+.+-.++. + ..|..
T Consensus 38 ~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~----~--~~T~~ 111 (483)
T PRK09442 38 LGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY----N--AVTLN 111 (483)
T ss_pred eeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C--CccHH
Confidence 336677788888888888877754 7788777777764211111 111111112222232223332 2 35999
Q ss_pred HHHHhhhcCc-ceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCC
Q 011580 109 DAVRSNLGGF-QVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPD 187 (482)
Q Consensus 109 ~l~~~~~G~~-~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~ 187 (482)
|.-++-||++ .+.+..+...+..++.....+...+..++.+++ ++....+++.++++........
T Consensus 112 e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GG 177 (483)
T PRK09442 112 DMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------------ISYETGLLIFGITVALYTAFGG 177 (483)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999875 455555555555566666667777777777664 2223444556666677788889
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 011580 188 FDQLWWLSIVAAVMSFTYS 206 (482)
Q Consensus 188 l~~l~~~s~~~~~~~~~~~ 206 (482)
++...+...+..+..+...
T Consensus 178 l~av~~TD~iQ~~i~~~~~ 196 (483)
T PRK09442 178 FRAVVLTDALQGIVMLVGT 196 (483)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999998888877655533
No 61
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.06 E-value=0.0061 Score=61.98 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=101.8
Q ss_pred cccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHh
Q 011580 35 KRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRS 113 (482)
Q Consensus 35 ~~~~s~~~a~~~l~~~~iG~Gi-LslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~ 113 (482)
.|+.+++...+.+..+.+|++. ++.|....+.|+. +....+..........++..+..++ .| ..|..|.-+.
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~T~~e~l~~ 74 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFIN----NG--AYTMPEYLEK 74 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH----cC--CCchhHHHHH
Confidence 3566788888888888887766 7788888888864 3322233333333444555554443 22 3599999999
Q ss_pred hhcCc-ceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhH
Q 011580 114 NLGGF-QVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLW 192 (482)
Q Consensus 114 ~~G~~-~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 192 (482)
-||++ .+.+..+...+..+......+...+..++.+++ ++.....++.++++........++...
T Consensus 75 Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------------i~~~~~~ii~~~i~~~Yt~~GG~~av~ 140 (407)
T TIGR00813 75 RFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------------LDLYLSLLLLGAITILYTVFGGLKAVV 140 (407)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------chHHHHHHHHHHHHHHHHHHcchHHHH
Confidence 99984 666667777778888888888888888887764 112333455566666677888899999
Q ss_pred HHHHHHHHHHHH
Q 011580 193 WLSIVAAVMSFT 204 (482)
Q Consensus 193 ~~s~~~~~~~~~ 204 (482)
+...+..+..+.
T Consensus 141 ~Td~iQ~~i~~~ 152 (407)
T TIGR00813 141 WTDTIQAVIMIL 152 (407)
T ss_pred HHHHHHHHHHHH
Confidence 988888776554
No 62
>PRK12488 acetate permease; Provisional
Probab=98.02 E-value=0.03 Score=59.17 Aligned_cols=152 Identities=14% Similarity=0.134 Sum_probs=100.6
Q ss_pred ccccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhhHHHHHHHHHHHHHHH-HHHHHHchhcCCCCCCcccccHHHHH
Q 011580 34 LKRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYT-STLLAACYRSGDPVTGKRNYTYVDAV 111 (482)
Q Consensus 34 ~~~~~s~~~a~~~l~~~~iG~Gi-LslP~af~~~G~~~gii~~~~~~~~~~~t-~~~l~~~~~~~~~~~g~~~~~y~~l~ 111 (482)
..|+.+++...+.+..+.++++. ++.|-...+.|+- +.... +...+.+.- ..++.+-.++ .+ .+|..|.-
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~-~g~~~g~~~~~~~~a~~lr~----~g--~~T~~d~l 136 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYA-LGVLAGWPIILFLIAERLRN----LG--KYTFADVV 136 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHH-HHHHHHHHHHHHHHHHHHHH----CC--CcchHHHH
Confidence 36778899999999999888886 7799888888874 32211 111122211 2333332332 22 25999998
Q ss_pred Hhhhc-CcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcch
Q 011580 112 RSNLG-GFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQ 190 (482)
Q Consensus 112 ~~~~G-~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 190 (482)
++=|| |+.|.+..+...+.........+...+..++.+++ ++...-+++.+++.......-.++.
T Consensus 137 ~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------------i~~~~~iii~~~i~~~Yt~~GGm~a 202 (549)
T PRK12488 137 SYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------------ISYLYAVVIVGALMVLYVTFGGMLA 202 (549)
T ss_pred HHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhccchhH
Confidence 88787 55788887777777777777777778877777663 2223334556666777778888999
Q ss_pred hHHHHHHHHHHHHHHHH
Q 011580 191 LWWLSIVAAVMSFTYST 207 (482)
Q Consensus 191 l~~~s~~~~~~~~~~~~ 207 (482)
..+...+..+..+...+
T Consensus 203 v~~td~iQ~~im~~~~i 219 (549)
T PRK12488 203 TTWVQIIKAVLLLSGTS 219 (549)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998888776665433
No 63
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.01 E-value=0.0083 Score=60.33 Aligned_cols=263 Identities=16% Similarity=0.093 Sum_probs=143.7
Q ss_pred HHHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcC--C
Q 011580 109 DAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQI--P 186 (482)
Q Consensus 109 ~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--~ 186 (482)
.++++.||.++.++..+.+.+.+.|-.....+..++..... . ..+..++.++.++++...+.. |
T Consensus 85 i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~-------------~~~~~~~ili~g~l~~l~~ifG~r 150 (442)
T COG1457 85 ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-T-------------GLPVWAGILIIGVLMTLVTIFGYR 150 (442)
T ss_pred eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-C-------------CCcHHHHHHHHHHHHHHHHHHhHH
Confidence 34678899999999999999999999999999998872211 1 223455666666555544433 3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHh-cccchhHhhH
Q 011580 187 DFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAY-SYSIILIEIQ 265 (482)
Q Consensus 187 ~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~i~~i~ 265 (482)
-++.+.+.+..-....+. ..+ +......... .... ..++.+..++..+++...-.+ ..-.......
T Consensus 151 ~l~~l~~~a~~~~~~lf~---~l~----~~~~~~~~~~---~~~~---~~~~~~~~~fl~a~slv~g~~~sw~~~~aDys 217 (442)
T COG1457 151 ALHKLERIAVPLLLLLFL---YLL----ALLFRSKGGL---DALW---VKGPTSPLSFLSALSLVIGSFASWGPYAADYS 217 (442)
T ss_pred HHHHHHHHHHHHHHHHHH---HHH----HHHHhccccc---ceee---ccCCCcchhHHHHHHHHHHHHHhhhhhhhhhh
Confidence 344444444433333322 121 2222211110 0000 111223335555555544444 3345567788
Q ss_pred hhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCc-ccccccccccCCCchHHHHHHHHHHHHHHHhhhhcc
Q 011580 266 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS-PGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFC 344 (482)
Q Consensus 266 ~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~~ 344 (482)
+-+|+|+. ++.-.....+......+-++.|.+...+-|+.. ..+....++ -+...+.+.+.+....+--..+
T Consensus 218 Ry~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G-----~~g~~~~lil~l~~~ttN~~nl 290 (442)
T COG1457 218 RYAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLG-----GFGLPAILILVLGTVTTNANNL 290 (442)
T ss_pred hhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhcc-----cHHHHHHHHHHHHHHhcCcHHH
Confidence 88888843 355566667777778888888998888888866 333333322 1344444555555555555444
Q ss_pred cchHHHHHHHhhhhCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHH----hccchHHHHHHhhhhhhhh
Q 011580 345 QPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISM----LLPFFNDVVGLLGALGFWP 420 (482)
Q Consensus 345 ~p~~~~~~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~----~ip~~~~v~~l~Ga~~~~~ 420 (482)
++.--.+.....+ ++ +..+..+..+. ..+++|+ +..+++..+.++|+.....
T Consensus 291 Ysa~ls~~~i~~~---------------l~-------k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~ 346 (442)
T COG1457 291 YSAGLSFANIIPK---------------LS-------KVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPW 346 (442)
T ss_pred HHHHHHHHHhhhh---------------hh-------hHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333332111 00 12333333222 2233333 4567888888888877666
Q ss_pred hHhhhhHHH
Q 011580 421 LTVYFPVEM 429 (482)
Q Consensus 421 l~~ilP~~~ 429 (482)
....+=-.+
T Consensus 347 ~~I~iad~~ 355 (442)
T COG1457 347 GGVMIADYF 355 (442)
T ss_pred HHHHHHHHH
Confidence 665554333
No 64
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.00 E-value=0.0014 Score=66.57 Aligned_cols=152 Identities=10% Similarity=0.167 Sum_probs=92.5
Q ss_pred cccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHh
Q 011580 35 KRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRS 113 (482)
Q Consensus 35 ~~~~s~~~a~~~l~~~~iG~Gi-LslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~ 113 (482)
.|+.+++...+++..+.+|++. ++.|-...+.|+. +....+............+.+-.++. + ..|..|.-++
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~r~~----~--~~T~~e~~~~ 77 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGIS-GLWYAIGYAIGFLLFALFFAPRLRRS----G--AVTIPEYLEK 77 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GG-GGHHHHHHHHHHHHHHHHTHHHHHHT----T----SHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-eeeeccccchhHHHHHHHHHHhhccc----c--hhhhhhhhhh
Confidence 4667788889999988888765 7789888888985 33333333333344444555544432 2 3499999999
Q ss_pred hhcCcc--eeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchh
Q 011580 114 NLGGFQ--VKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQL 191 (482)
Q Consensus 114 ~~G~~~--~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 191 (482)
-||++. +.+..+...+.........+...+..++.+++ ++.....++.++++......-.++..
T Consensus 78 Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--------------i~~~~~~~i~~~i~~iYt~~GGl~av 143 (406)
T PF00474_consen 78 RYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG--------------IPYNTAILIVGVIVIIYTFFGGLRAV 143 (406)
T ss_dssp HT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHHHTTCTT-----
T ss_pred hcCCchhhhhhcccccchhhhhhhhccccccccchhhccc--------------hhhhHHHHHHHHHHHHhhhhhhHhhh
Confidence 999988 66666656666667777777888887777664 12234445566666667788888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 011580 192 WWLSIVAAVMSFTYST 207 (482)
Q Consensus 192 ~~~s~~~~~~~~~~~~ 207 (482)
.+...+..+..+....
T Consensus 144 ~~td~iQ~~i~~~~~~ 159 (406)
T PF00474_consen 144 AWTDFIQGVIMIIGAI 159 (406)
T ss_dssp -SHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 8888888776655333
No 65
>PRK11017 codB cytosine permease; Provisional
Probab=97.91 E-value=0.035 Score=56.32 Aligned_cols=173 Identities=15% Similarity=0.090 Sum_probs=91.7
Q ss_pred ccHHHHHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhc
Q 011580 105 YTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQ 184 (482)
Q Consensus 105 ~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~ 184 (482)
.++.-+.|..||.+|..+..+...+...|-........++.+..+.+. +...+.+++.++..+...
T Consensus 71 ~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~--------------~~~~~~~i~~~l~~~~~~ 136 (404)
T PRK11017 71 LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL--------------DINLLIVLSGLLMTVTAY 136 (404)
T ss_pred cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHH
Confidence 388999999999999999888888777776666666666655544320 112234445555444443
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHh-cccchhHh
Q 011580 185 IPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAY-SYSIILIE 263 (482)
Q Consensus 185 ~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~i~~ 263 (482)
.. .+.++++...+........+..+ +....+....+ .... .. + .+...+..++...+-.+ ..-.+.++
T Consensus 137 ~G-~~~i~~~~~~~~p~~~~~~~~~~---~~~~~~~~g~~-~~~~--~~---~-~~~~~~~~a~~~~~g~~~~~~~~~~D 205 (404)
T PRK11017 137 FG-ISALTILSRIAVPAIALLGGYSV---WLAVNDVGGLD-GLKA--IV---P-AEPLDFSAALTLVVGSFISGGTLTAD 205 (404)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHhccCchh-hhhc--CC---C-CCcccHHHHHHHHHHHHHHhHhcCCC
Confidence 32 34445444444433332111111 11111111100 0000 00 0 01123334444433333 44567888
Q ss_pred hHhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 011580 264 IQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGD 306 (482)
Q Consensus 264 i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~ 306 (482)
..+..|++ |+.......+..+...+...+|.......|+
T Consensus 206 ysRy~k~~----~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 206 FVRFGRSA----KIAVLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred hHhhccCc----cceeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888877 4444566667767777777777776666665
No 66
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.86 E-value=0.051 Score=56.53 Aligned_cols=153 Identities=8% Similarity=-0.006 Sum_probs=102.5
Q ss_pred CccccchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhhHHHHHH---HHHHHHHHHHHHHHHchhcCCCCCCcccccHH
Q 011580 33 RLKRTGTLWTASAHIITAVIG-SGVLSLAWATAQLGWIAGPSVMF---LFSFVTYYTSTLLAACYRSGDPVTGKRNYTYV 108 (482)
Q Consensus 33 ~~~~~~s~~~a~~~l~~~~iG-~GiLslP~af~~~G~~~gii~~~---~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~ 108 (482)
...|+.+.+-......-+..+ .-.+++|-...+.|+....+... .....-.+-...+.+..+ ..+ ..|..
T Consensus 35 ~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~----~~~--~~T~~ 108 (493)
T COG0591 35 LGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAK----ARG--ATTIP 108 (493)
T ss_pred ccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccC--CccHH
Confidence 345555566666777767776 77799999999999864433333 222222333333333222 222 35999
Q ss_pred HHHHhhhc-CcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCC
Q 011580 109 DAVRSNLG-GFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPD 187 (482)
Q Consensus 109 ~l~~~~~G-~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~ 187 (482)
|.-++-|| +..|.+..+...+..++.+...+...++.++..++ . +...-.++.++++......-.
T Consensus 109 d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i-------------~~~~~~~~~~~~v~~Yt~~gG 174 (493)
T COG0591 109 DFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-I-------------SYVTGILIGALIVALYTFLGG 174 (493)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-C-------------CHHHHHHHHHHHHHHHHHHcC
Confidence 99999999 78899999999999999999999999998866654 1 112223444555666677778
Q ss_pred cchhHHHHHHHHHHHHHH
Q 011580 188 FDQLWWLSIVAAVMSFTY 205 (482)
Q Consensus 188 l~~l~~~s~~~~~~~~~~ 205 (482)
++...+...+........
T Consensus 175 ~~av~~Td~iqg~im~i~ 192 (493)
T COG0591 175 LRAVVWTDFIQGLIMLIA 192 (493)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 888888887776665543
No 67
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.71 E-value=0.039 Score=55.02 Aligned_cols=73 Identities=12% Similarity=0.132 Sum_probs=48.2
Q ss_pred HHHhhhhhhhhhHHHHHHH-hhC--hhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcCcceee
Q 011580 46 HIITAVIGSGVLSLAWATA-QLG--WIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKI 122 (482)
Q Consensus 46 ~l~~~~iG~GiLslP~af~-~~G--~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~i 122 (482)
.++.-.+|+|.|-.|-... ++| |..+++.+++.++..-..+.. .. ++.|. +|+++.++ +||+...+
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av---~~~gG---~~~~l~~~-~g~~f~~l 71 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----AL---ALVGG---GYDSLSAR-IGKVFGIL 71 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----ee---eecCC---CHHHHHHH-hChHHHHH
Confidence 4566779999999988774 443 556667777777666655544 11 12331 78888877 78887777
Q ss_pred hHHHHHH
Q 011580 123 CGLVQYL 129 (482)
Q Consensus 123 ~~~~~~~ 129 (482)
..+..++
T Consensus 72 f~~~~~l 78 (378)
T TIGR00796 72 FTVILYL 78 (378)
T ss_pred HHHHHHH
Confidence 7666553
No 68
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.51 E-value=0.17 Score=52.94 Aligned_cols=155 Identities=14% Similarity=0.012 Sum_probs=90.6
Q ss_pred CccccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhhHHHHHHHHHHHHH-HHHHHHHHchhcC-CCCCCcccccHHH
Q 011580 33 RLKRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTY-YTSTLLAACYRSG-DPVTGKRNYTYVD 109 (482)
Q Consensus 33 ~~~~~~s~~~a~~~l~~~~iG~Gi-LslP~af~~~G~~~gii~~~~~~~~~~-~t~~~l~~~~~~~-~~~~g~~~~~y~~ 109 (482)
...|+.+++...+.+..+.+++.. ++.|-...+.|+.. . ...+...+.. ....++..-.+.. ..+.| ..|..|
T Consensus 37 lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~-~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~T~~e 112 (502)
T PRK15419 37 LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-S-WIAIGLTLGAWINWKLVAGRLRVHTEYNNN--ALTLPD 112 (502)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ceeHHH
Confidence 346778889899999888888877 66888888888753 1 1111111221 1112221111100 00112 358888
Q ss_pred HHHhhhcCcceee---hHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCC
Q 011580 110 AVRSNLGGFQVKI---CGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIP 186 (482)
Q Consensus 110 l~~~~~G~~~~~i---~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~ 186 (482)
.-++=||++.+.+ ..+...+.....+..-+...+..++.+++ ++.....++.++++......-
T Consensus 113 ~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~G 178 (502)
T PRK15419 113 YFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------------MSYETALWAGAAATILYTFIG 178 (502)
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhh
Confidence 8888898754443 33333334444444445556666665553 222344556667777778888
Q ss_pred CcchhHHHHHHHHHHHHHH
Q 011580 187 DFDQLWWLSIVAAVMSFTY 205 (482)
Q Consensus 187 ~l~~l~~~s~~~~~~~~~~ 205 (482)
.++...+...+..+..+..
T Consensus 179 Gl~aV~~TD~iQ~~imi~g 197 (502)
T PRK15419 179 GFLAVSWTDTVQASLMIFA 197 (502)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999999988887766543
No 69
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.51 E-value=0.18 Score=53.27 Aligned_cols=150 Identities=15% Similarity=0.127 Sum_probs=94.5
Q ss_pred ccccchHHHHHHHHHhhhhhhh-hhHHHHHHHhhChhhHHHHHHHHHHHHH-HHHHHHHHchhcCCCCCCcccccHHHHH
Q 011580 34 LKRTGTLWTASAHIITAVIGSG-VLSLAWATAQLGWIAGPSVMFLFSFVTY-YTSTLLAACYRSGDPVTGKRNYTYVDAV 111 (482)
Q Consensus 34 ~~~~~s~~~a~~~l~~~~iG~G-iLslP~af~~~G~~~gii~~~~~~~~~~-~t~~~l~~~~~~~~~~~g~~~~~y~~l~ 111 (482)
..|+.+++.....+..+.+++. .+..|-...+.|+- +....+ ...+.. ....++.+-.++ .| .+|..|.-
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~-g~~~~~~i~~~~~a~~lrr----~g--~~T~~d~l 136 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSL-GFLVGWPIILFLIAERLRN----LG--RYTFADVA 136 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHH-HHHHHHHHHHHHHHHHHHH----cC--CccHHHHH
Confidence 3566778888888888877754 58899888788874 322221 111221 222333443332 23 25999988
Q ss_pred HhhhcC-cceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcch
Q 011580 112 RSNLGG-FQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQ 190 (482)
Q Consensus 112 ~~~~G~-~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 190 (482)
++=||. ..|.+..+...+.........+...+..++.+++ ++...-+++.++++........++.
T Consensus 137 ~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------------i~~~~~iii~~~i~~~Yt~~GGm~a 202 (549)
T TIGR02711 137 SYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------------LNYHVAVVLVGILMVMYVLFGGMLA 202 (549)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhhHH
Confidence 877874 4677766666666666666677777777776664 1223334556666666777888888
Q ss_pred hHHHHHHHHHHHHHH
Q 011580 191 LWWLSIVAAVMSFTY 205 (482)
Q Consensus 191 l~~~s~~~~~~~~~~ 205 (482)
..+...+..+..+..
T Consensus 203 v~~td~iQ~~im~~g 217 (549)
T TIGR02711 203 TTWVQIIKAVLLLFG 217 (549)
T ss_pred HHHHHHHHHHHHHHH
Confidence 889888887666543
No 70
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.38 E-value=0.014 Score=60.38 Aligned_cols=233 Identities=14% Similarity=0.112 Sum_probs=116.3
Q ss_pred hHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcCcceeehHHHHHHHHHHHHH
Q 011580 57 LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAI 136 (482)
Q Consensus 57 LslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~ 136 (482)
|=+++...|+|++..+..+++...+..+|..-+..-.. +-...|.. -|--+ .+.+|+-.+--+....++.+...|.
T Consensus 88 LR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsT-NGaV~GGG--aYymI-SRsLGpEfGGSIGllFf~anV~~~a 163 (945)
T KOG1288|consen 88 LRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAIST-NGAVRGGG--AYYMI-SRSLGPEFGGSIGLLFFVANVFNCA 163 (945)
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCceecCc--eEEEE-EcccCcccCCeeeehhhHHHHhcch
Confidence 45788888999988888888877777777666655322 22234433 22222 3447776655566666666666677
Q ss_pred HHHHHhhhhhHHhhhhccccCCC-CCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011580 137 GYTIASSISMMAIERSNCFHSKG-DKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIA 215 (482)
Q Consensus 137 ~y~i~~~~~l~~i~~~~~~~~~~-~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~ 215 (482)
.++..+-+-+-..++ +...+ +.........||-++.+.++..+|+.-.+-.-+.++-.+++.-+...+......+.
T Consensus 164 m~isG~vE~il~nfG---~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAkas~i~f~~is~s~~si~iS 240 (945)
T KOG1288|consen 164 MNISGFVEPILDNFG---KEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKASNILFVVISVSLFSIPIS 240 (945)
T ss_pred hhhhhhhHHHHHhcC---ccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHHHHHhhhhhe
Confidence 676666655554443 22211 11122234566666544443333322111112222222322222111111111111
Q ss_pred hhhhcCCCCCC-----------------cccccccccc-----c------hhhHHHHHHHHHHHHHHhcccchhHhhHhh
Q 011580 216 KVAETGKFRGS-----------------LTGISIGTVS-----E------TQKIWRSFQALGDIAFAYSYSIILIEIQDT 267 (482)
Q Consensus 216 ~~~~~~~~~~~-----------------~~~~~~~~~~-----~------~~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 267 (482)
.+ -..+.+.. .++.+|.... + .....++-..++++.-+=.|...=.....|
T Consensus 241 ~i-fvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgE 319 (945)
T KOG1288|consen 241 FI-FVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSGE 319 (945)
T ss_pred eE-EeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCcc
Confidence 11 11111111 1111110000 0 000012233444444333444444566789
Q ss_pred hCCCCccccchhhHHHHHHHHHHHHHHHHHhHH
Q 011580 268 VKSPPSESKTMKKASLISVGVTTLFYMLCGCFG 300 (482)
Q Consensus 268 m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~g 300 (482)
+|+|+ |.+++-...+...++++|+++.++-
T Consensus 320 Lk~PS---kSIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 320 LKAPS---KSIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred ccCcc---ccCCccchHHHHHHHHHHHHHHHHh
Confidence 99998 7899999999999999999887765
No 71
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.36 E-value=0.28 Score=51.93 Aligned_cols=151 Identities=12% Similarity=0.083 Sum_probs=96.7
Q ss_pred CccccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHH
Q 011580 33 RLKRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAV 111 (482)
Q Consensus 33 ~~~~~~s~~~a~~~l~~~~iG~Gi-LslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~ 111 (482)
...|+.+++...+.+..+.++++. ++.|-...+.|+. +..............+.++.+-.++. | .+|..|.-
T Consensus 29 laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~-~~~~~~g~~~~~~~~~~~~~p~~rr~----~--~~T~~e~l 101 (552)
T TIGR03648 29 VAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYD-GLAYLMGWTGGYVLLALLLAPYLRKF----G--KYTVPDFI 101 (552)
T ss_pred eeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHC----C--CccHHHHH
Confidence 346778899999999999887654 7788877777764 22111111111122334445444432 2 34888888
Q ss_pred HhhhcCc-ceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcch
Q 011580 112 RSNLGGF-QVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQ 190 (482)
Q Consensus 112 ~~~~G~~-~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 190 (482)
++=||++ .+.+..+...+.........+...+..++.+++ ++...-+++.++++......-.++.
T Consensus 102 ~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~i~~iYt~~GG~~a 167 (552)
T TIGR03648 102 GDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------------VDFETGVFIGMAIVFFYAVLGGMKG 167 (552)
T ss_pred HHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhHHH
Confidence 8888865 577766666666666666667777777776664 1223334556666666778888999
Q ss_pred hHHHHHHHHHHHHH
Q 011580 191 LWWLSIVAAVMSFT 204 (482)
Q Consensus 191 l~~~s~~~~~~~~~ 204 (482)
..+...+..+..+.
T Consensus 168 V~~TD~iQ~iim~i 181 (552)
T TIGR03648 168 VTWTQVAQYIVLIV 181 (552)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888766554
No 72
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.22 Score=50.22 Aligned_cols=133 Identities=13% Similarity=0.037 Sum_probs=80.4
Q ss_pred cchHHHHHHHHHhhhhhhhhhHHHHHH-HhhChhhHHHH--HHH-HHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHH
Q 011580 37 TGTLWTASAHIITAVIGSGVLSLAWAT-AQLGWIAGPSV--MFL-FSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVR 112 (482)
Q Consensus 37 ~~s~~~a~~~l~~~~iG~GiLslP~af-~~~G~~~gii~--~~~-~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~ 112 (482)
.....+.-+....+-+|.|=++--..+ ++-|+-+..++ ..+ ...+...+.++-. .+|+ +..|..+
T Consensus 16 ~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgi--------vTG~---~laq~ir 84 (416)
T COG1914 16 LLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGI--------VTGK---GLAEAIR 84 (416)
T ss_pred HHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCC---cHHHHHH
Confidence 345566667777777777766654444 34444322211 111 1112222222222 2333 7888888
Q ss_pred hhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhH
Q 011580 113 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLW 192 (482)
Q Consensus 113 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 192 (482)
+-++|+..++..+...+....+.++.....+-.++-++.. +..+-.+++++..+.+...++.+.+.
T Consensus 85 ~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~i--------------p~~~g~iItav~~~iil~~~~~r~~E 150 (416)
T COG1914 85 ERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGI--------------PLIIGAVITAVDVLIILLLKGYRLLE 150 (416)
T ss_pred HHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 8899999999999999999999999999999888877741 12333455555555555555455555
Q ss_pred HH
Q 011580 193 WL 194 (482)
Q Consensus 193 ~~ 194 (482)
.+
T Consensus 151 ~~ 152 (416)
T COG1914 151 RV 152 (416)
T ss_pred HH
Confidence 44
No 73
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.33 E-value=0.12 Score=52.18 Aligned_cols=88 Identities=13% Similarity=0.061 Sum_probs=57.7
Q ss_pred ccchHHHHHHHHHhhhhhhh-hhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccH-----HH
Q 011580 36 RTGTLWTASAHIITAVIGSG-VLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTY-----VD 109 (482)
Q Consensus 36 ~~~s~~~a~~~l~~~~iG~G-iLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y-----~~ 109 (482)
++.|.+|+++..+.+.+|+| ++.+|-+.+..| ..++.++.+.+++..-+.+.-.-...+..+++++. +| ..
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g--~~~GGP~yy 121 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDADG--VFRGGPMYY 121 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCC--CEecChHHH
Confidence 45799999999999999998 999999976666 56777777777666655554443332222111111 24 56
Q ss_pred HHHhhhcCcceeehHHH
Q 011580 110 AVRSNLGGFQVKICGLV 126 (482)
Q Consensus 110 l~~~~~G~~~~~i~~~~ 126 (482)
+-+...||+...+..++
T Consensus 122 i~~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 122 IKKGLGMRWLAVLFAVF 138 (425)
T ss_pred HHHHhCccHHHHHHHHH
Confidence 66676777655554444
No 74
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.15 E-value=0.37 Score=49.03 Aligned_cols=199 Identities=15% Similarity=0.208 Sum_probs=102.5
Q ss_pred ccHHHHHHhhhcCcceee---hHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCC-ccCCCchhHHHHH---
Q 011580 105 YTYVDAVRSNLGGFQVKI---CGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPC-HMNSNPYMIAFGI--- 177 (482)
Q Consensus 105 ~~y~~l~~~~~G~~~~~i---~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~-~~~~~~~~~i~~~--- 177 (482)
.+|..+.+..||-++..+ .+....+.-||... -..+..+..++.....+....+... ...-...-.+..+
T Consensus 103 IpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW 179 (497)
T COG1953 103 IPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFW 179 (497)
T ss_pred CCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHH
Confidence 599999999999876544 44444444444442 3344445555544332211111101 1111111122111
Q ss_pred HHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC--CCCccccccccccchhhHHHHHHHHHHHHHHh
Q 011580 178 VEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKF--RGSLTGISIGTVSETQKIWRSFQALGDIAFAY 255 (482)
Q Consensus 178 i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf 255 (482)
.+-.++..+..+.++++-..+..++... ...+.++-..+.+.. -.+.++ +........|.+...+...+-.|
T Consensus 180 ~l~~l~~~~g~~~Ir~~~~~a~p~~~~~---~~gl~Iw~~~~a~g~~~~~~~p~---~~~~~~~~~w~~~~~~~~~v~~~ 253 (497)
T COG1953 180 VLQLLVLFKGMESIRKFETWAGPLVYIA---MLGLAIWALVKAGGSSILGELPA---GTVSGSNSSWAFLAGIAAWVGFW 253 (497)
T ss_pred HHHHHHHhcCHHHHHHHHHHhchHHHHH---HHHHHHHHHHhcCCcCccccCCC---CCCCcchhHHHHHHHHHHHHHHH
Confidence 1333446677888888877777666553 333334433333321 112221 11233334455555554444444
Q ss_pred -cccchhHhhHhhhCCCCccccchhhHHHHHHHHHHHHHHH----HHhHHhhhcCCC--ccccccccc
Q 011580 256 -SYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYML----CGCFGYAAFGDL--SPGNLLTGF 316 (482)
Q Consensus 256 -~~~~~i~~i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~----~g~~gy~~fG~~--~~~~i~~~~ 316 (482)
....|+|...+.-|+|+ .-..--.++..+.+.+..+ .+..++..||+. .+.++..++
T Consensus 254 Atl~lN~~DFsRfa~s~~----~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~ 317 (497)
T COG1953 254 ATLALNIPDFTRFAKSQK----AQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARF 317 (497)
T ss_pred HHHhcCCchhhcccCChh----hhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHh
Confidence 45678899999999884 3333344455555555544 445567789987 455777765
No 75
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.11 E-value=0.46 Score=49.50 Aligned_cols=156 Identities=10% Similarity=0.058 Sum_probs=88.9
Q ss_pred ccccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHH
Q 011580 34 LKRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVR 112 (482)
Q Consensus 34 ~~~~~s~~~a~~~l~~~~iG~Gi-LslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~ 112 (482)
..|+.+++...+.+..+.+++.. ++.|-...+.|+.. ....+...+........+.+-.++..+ ...+..|..|.-+
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~-~~~~~~T~~e~l~ 111 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTE-AAHNSITLPDFFE 111 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhH-hhcCCccHHHHHH
Confidence 35677788888888888777654 66887777788752 222222122222233334332221110 0112458899988
Q ss_pred hhhcCcceee---hHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcc
Q 011580 113 SNLGGFQVKI---CGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFD 189 (482)
Q Consensus 113 ~~~G~~~~~i---~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~ 189 (482)
+=||++.+.+ ..+...+.........+...+..++.+++ ++....+++.+++.........++
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------------i~~~~~iii~~~i~~~Yt~~GGl~ 177 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------------LDYKTGLLIGALIIVIYTFFGGFL 177 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------ccHHHHHHHHHHHHHHHHHhhhHH
Confidence 8899765444 33333333333344445556666666553 122333455566676777888899
Q ss_pred hhHHHHHHHHHHHHHH
Q 011580 190 QLWWLSIVAAVMSFTY 205 (482)
Q Consensus 190 ~l~~~s~~~~~~~~~~ 205 (482)
...+...+..+..+..
T Consensus 178 av~~TD~iQ~~i~~~~ 193 (487)
T TIGR02121 178 AVSWTDFVQGLLMFFA 193 (487)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888888887766543
No 76
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.05 E-value=0.011 Score=60.70 Aligned_cols=247 Identities=15% Similarity=0.109 Sum_probs=114.7
Q ss_pred ccccchHHHHHHHHHhhhhhhhhhHHHHHHHh--hChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHH
Q 011580 34 LKRTGTLWTASAHIITAVIGSGVLSLAWATAQ--LGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAV 111 (482)
Q Consensus 34 ~~~~~s~~~a~~~l~~~~iG~GiLslP~af~~--~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~ 111 (482)
++|+.+.++.+..-.+..+....+.+...... .++..+++..++..++...-.-+...... ++| .++..++
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~----r~G---l~~~v~s 77 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGP----RTG---LPTMVLS 77 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHH----CC------HHHHT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccc----ccC---CCchhcc
Confidence 34454555555555555554444444443322 23334444444444444333333333222 233 3778889
Q ss_pred HhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhcccc--CCCCCCCCccCCCchh--HHHHHHHHHhhcCCC
Q 011580 112 RSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFH--SKGDKNPCHMNSNPYM--IAFGIVEIVLSQIPD 187 (482)
Q Consensus 112 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~--~~~~~~~~~~~~~~~~--~i~~~i~~pl~~~~~ 187 (482)
|..||.++..+..+...+...|-........++.+..+.+....+ ..++ .........++ ++..++..+ .....
T Consensus 78 R~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~-~~~~g 155 (440)
T PF02133_consen 78 RASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGN-AIIGIALPLWVCFFIFWLIQTL-FAIYG 155 (440)
T ss_dssp TTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH------------HHHHHHHHHHHH-HHCTH
T ss_pred hhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhh-hhhcchhhHHHHHHHHHHHHHH-HHhcC
Confidence 999999999999999999999999999999999999988743210 0000 00000011111 112222222 23344
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHH-HHHHHHHHHHHHh-cccchhHhhH
Q 011580 188 FDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIW-RSFQALGDIAFAY-SYSIILIEIQ 265 (482)
Q Consensus 188 l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~faf-~~~~~i~~i~ 265 (482)
.+.++.+..+........ .+...++...+... +.... .+ ..+ ... .+..++....-.+ ..-.+.+...
T Consensus 156 ~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~--~~-~~~--~~~~~~~~~i~~~~~~~~~~~~~~~Dys 225 (440)
T PF02133_consen 156 MKALRRLAVIAAPILLVV---FIGMLIWALSKAGG--GPLLS--AP-ASP--SPSGSFLAAIALVIGSWISWAPNASDYS 225 (440)
T ss_dssp HHHHHHHHHCCHHHHHHH---HHHHHHHHHHHCT---HHHCC--S---S------S-HHHHHHHHHCCCHHHHCCCHHHH
T ss_pred HHHHHhHHhhhhHHHHhh---hhheeEEEeecCCc--chhhh--Cc-ccc--hhHHHHHHHHHHHHhhhhhhhhccccHH
Confidence 666666655554443321 12222222221111 00000 00 000 001 1223333332222 2234456888
Q ss_pred hhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhh
Q 011580 266 DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA 303 (482)
Q Consensus 266 ~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~ 303 (482)
+.+|++ ++-.+....+.....+....+|.++...
T Consensus 226 Ry~~~~----~~~~~~~~~~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 226 RYAKSD----TSAWWGFWLGFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp TTC--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCCCC----CCcEEEEeehhhhHHHHHHHHHHHHHHH
Confidence 888877 5566677777777777777777766554
No 77
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.02 E-value=0.02 Score=55.78 Aligned_cols=114 Identities=15% Similarity=0.165 Sum_probs=91.6
Q ss_pred CCCCccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHH
Q 011580 30 DDGRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVD 109 (482)
Q Consensus 30 ~~~~~~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~ 109 (482)
+|+.+.-..+.+-.+.|=+.++-|+|-+-=|..-.+-||+++.+++++-++...--.....-....+ +.|+ +.+|
T Consensus 44 ~DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR--~~G~---Si~~ 118 (376)
T PF02554_consen 44 NDGVDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVR--HKGK---SIGE 118 (376)
T ss_pred CCCCCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhc--CCCc---cHHH
Confidence 4445554556778999999999999999999999999999999998887777766666655433321 2333 9999
Q ss_pred HHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHH
Q 011580 110 AVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMA 148 (482)
Q Consensus 110 l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~ 148 (482)
++++..||+++.+..+..++.+.....++....++.+..
T Consensus 119 i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 119 IAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999888887777643
No 78
>PRK09395 actP acetate permease; Provisional
Probab=96.99 E-value=0.65 Score=49.21 Aligned_cols=150 Identities=15% Similarity=0.123 Sum_probs=95.3
Q ss_pred ccccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHH
Q 011580 34 LKRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVR 112 (482)
Q Consensus 34 ~~~~~s~~~a~~~l~~~~iG~Gi-LslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~ 112 (482)
..|+.+++...+.+..+.+|++. ++.|-...+.|+. +....+...+.......++.+-.++ .+ .+|+.|.-+
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~-~~~~~~~~~~g~~~~~~~~~~~~r~----~g--~~T~~d~l~ 139 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYD-GLIYSIGFLVGWPIILFLIAERLRN----LG--KYTFADVAS 139 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHHhh----CC--CccHHHHHH
Confidence 35677788888888888888766 7899888888874 2222111111111222333332232 22 369999988
Q ss_pred hhhcC-cceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchh
Q 011580 113 SNLGG-FQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQL 191 (482)
Q Consensus 113 ~~~G~-~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 191 (482)
.=||+ +.|.+..+...+.........+...+..++.+++ ++....+++.++++......-.++..
T Consensus 140 ~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------------i~~~~~ili~~~i~~iYt~~GGm~av 205 (551)
T PRK09395 140 YRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------------LNYHVAVVLVGVLMMVYVLFGGMLAT 205 (551)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 88885 4777777766666666666666667776666653 22233455666677777888889998
Q ss_pred HHHHHHHHHHHHH
Q 011580 192 WWLSIVAAVMSFT 204 (482)
Q Consensus 192 ~~~s~~~~~~~~~ 204 (482)
.+...+..+..+.
T Consensus 206 ~~TD~iQ~iim~~ 218 (551)
T PRK09395 206 TWVQIIKAVLLLS 218 (551)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888766554
No 79
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.3 Score=51.55 Aligned_cols=107 Identities=21% Similarity=0.278 Sum_probs=74.7
Q ss_pred cchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhh
Q 011580 37 TGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNL 115 (482)
Q Consensus 37 ~~s~~~a~~~l~~~~iG~Gi-LslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~ 115 (482)
-+++.+...=.+-.+.|.=. +=|-|...-+|...+..+.++|++++..|+.-+...+..---..|. +|--+. +.+
T Consensus 114 mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGG---sYfmIS-RsL 189 (1075)
T KOG2082|consen 114 MGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGG---SYFMIS-RSL 189 (1075)
T ss_pred cceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC---eeEEEe-ccc
Confidence 34555666666677777755 3488888999999999999999999999988877755432212232 444333 458
Q ss_pred cCcceeehHHHHHHHHHHHHHHHHHHhhhhhH
Q 011580 116 GGFQVKICGLVQYLNLFGVAIGYTIASSISMM 147 (482)
Q Consensus 116 G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~ 147 (482)
||-++-.+.+|..+-.-.....|++..-+.+-
T Consensus 190 GPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L 221 (1075)
T KOG2082|consen 190 GPEFGGAVGLCFYLGTTVAAAMYILGAVEIFL 221 (1075)
T ss_pred CccccceeeehhhhhhHHHHHHHHHhHHHHHH
Confidence 88888888888877777777777776655443
No 80
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.60 E-value=0.0087 Score=61.13 Aligned_cols=233 Identities=15% Similarity=0.194 Sum_probs=135.9
Q ss_pred hHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcC
Q 011580 39 TLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGG 117 (482)
Q Consensus 39 s~~~a~~~l~~~~iG~Gi-LslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~ 117 (482)
.+-+.+...+-++.|.=+ |=++|...|+|...+++++..+..++..|..--..-..+-.-+.|. .|- +..+.+|+
T Consensus 32 ~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg---~yf-lis~slg~ 107 (643)
T KOG2083|consen 32 WWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG---VYF-LISRSLGP 107 (643)
T ss_pred eeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc---EEE-EEEecccc
Confidence 344445555666666655 5599999999999999988888777777665444322222223332 222 23456899
Q ss_pred cceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHHHH
Q 011580 118 FQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIV 197 (482)
Q Consensus 118 ~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 197 (482)
..+--+.+...+.+.-.+..|++.+++.+.++++..... ..+. ...+..+++..++. -.++|.+.+
T Consensus 108 efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~~--------~i~g--i~~vt~~ill~i~~----ag~~w~~k~ 173 (643)
T KOG2083|consen 108 EFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETESKE--------MIDG--IGSVTVLILLAINV----AGVEWEAKL 173 (643)
T ss_pred cccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccHH--------Hhcc--hhHHHHHHHHHhhh----ccchhHHHH
Confidence 888889999999999999999999999999999853110 1111 12233333333333 335566555
Q ss_pred HHHHHHHHHHHHHHHHHHh-hhhcCCCCCCccccc----ccc----ccchhhHHHHHHHHHHHHHHhcccchhHhhHhhh
Q 011580 198 AAVMSFTYSTIGLGLGIAK-VAETGKFRGSLTGIS----IGT----VSETQKIWRSFQALGDIAFAYSYSIILIEIQDTV 268 (482)
Q Consensus 198 ~~~~~~~~~~i~i~~~i~~-~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m 268 (482)
..+..+..+ +.+...+.. .......+....++. ..+ .++. ..+|+.+++..=+..|...=..+.+++
T Consensus 174 q~~ll~il~-iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~---~tfF~vf~vfFpaatgilaG~nisGdL 249 (643)
T KOG2083|consen 174 QIVLLLILL-IAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPG---YTFFSVFAVFFPAATGILAGANISGDL 249 (643)
T ss_pred HHHHHHHHH-HHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCC---CceEeeeeeecchhhhhhccccccCCC
Confidence 555543322 122222111 111000000000000 111 1111 234444555555565555556778999
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHH
Q 011580 269 KSPPSESKTMKKASLISVGVTTLFYMLC 296 (482)
Q Consensus 269 ~~p~~~~~~~~~~~~~s~~~~~i~Y~~~ 296 (482)
++|. +..++....+....+.+|..+
T Consensus 250 ~~Pq---~~IP~GaL~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 250 KDPQ---KAIPLGALLAIGVSTLLYLIF 274 (643)
T ss_pred CCch---hhcccchhhhhhhhhhhhhhh
Confidence 9998 789999999999999999654
No 81
>PRK00701 manganese transport protein MntH; Reviewed
Probab=96.44 E-value=1.3 Score=45.31 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=35.1
Q ss_pred cHHHHHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 011580 106 TYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIE 150 (482)
Q Consensus 106 ~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~ 150 (482)
+..|+.++-+||+..++..+...+...+..++.....+.-++.++
T Consensus 95 ~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 95 DLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred CHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999888877777777777777777777776666554
No 82
>PRK10484 putative transporter; Provisional
Probab=96.29 E-value=1.8 Score=45.47 Aligned_cols=158 Identities=7% Similarity=0.030 Sum_probs=84.8
Q ss_pred CccccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHH
Q 011580 33 RLKRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAV 111 (482)
Q Consensus 33 ~~~~~~s~~~a~~~l~~~~iG~Gi-LslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~ 111 (482)
...|+.+++-..+.+..+.++++. ++.|-...+.|+.. ................++..-.++ .| ..|..|.-
T Consensus 35 lagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~p~~~r----~~--~~T~~e~l 107 (523)
T PRK10484 35 LAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSV-MAWEVTAAIALIILALIFLPRYLK----SG--ITTIPDFL 107 (523)
T ss_pred ecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHHh----cC--CccHHHHH
Confidence 446778888888888888887776 66888777778643 111111111111233333332232 22 45999999
Q ss_pred HhhhcCcceeehHHHHHHHHHHHHHHH-HHHhhhhhHHhhhhccccCCCCCCCCccCCCchh----HHHHHHHHHhhcCC
Q 011580 112 RSNLGGFQVKICGLVQYLNLFGVAIGY-TIASSISMMAIERSNCFHSKGDKNPCHMNSNPYM----IAFGIVEIVLSQIP 186 (482)
Q Consensus 112 ~~~~G~~~~~i~~~~~~~~~~g~~~~y-~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~----~i~~~i~~pl~~~~ 186 (482)
++-||++.+.+......+......... +...+..+..++..... . ..+...-. ++.+++.......-
T Consensus 108 ~~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~--~------gi~~~~~~~~~~~~~~~i~~~Yt~~G 179 (523)
T PRK10484 108 EERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSEL--L------GISYGAAIWLLVWLIGIIGAIYAVFG 179 (523)
T ss_pred HHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh--c------CCcHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999877666554443333222222 22233333333210000 0 11111111 12234455567778
Q ss_pred CcchhHHHHHHHHHHHHHH
Q 011580 187 DFDQLWWLSIVAAVMSFTY 205 (482)
Q Consensus 187 ~l~~l~~~s~~~~~~~~~~ 205 (482)
.++...+...+..+..+..
T Consensus 180 Gl~aV~~TD~iQ~vim~i~ 198 (523)
T PRK10484 180 GLKAVAVSDTINGIGLLIG 198 (523)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 8999999988887766543
No 83
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=95.76 E-value=2.4 Score=42.22 Aligned_cols=80 Identities=11% Similarity=0.123 Sum_probs=54.6
Q ss_pred cHHHHHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhc-
Q 011580 106 TYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQ- 184 (482)
Q Consensus 106 ~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~- 184 (482)
+..|..++-+||+..+...+...+.......+.+...+.-++.+++ .+...+.++.++..+.+..
T Consensus 43 ~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g--------------~~~~~~~~~~~~~~~~ll~~ 108 (358)
T PF01566_consen 43 GLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG--------------IPLWIWVLLVAVIAILLLWL 108 (358)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CCcHHHHHHHHHHHHHHHHH
Confidence 7778888889999998888888888888888888777777765552 2224455555555444444
Q ss_pred -CCCcchhHHHHHHHH
Q 011580 185 -IPDFDQLWWLSIVAA 199 (482)
Q Consensus 185 -~~~l~~l~~~s~~~~ 199 (482)
.++.+.+..+...-.
T Consensus 109 ~~~~y~~~E~~~~~lv 124 (358)
T PF01566_consen 109 SSGGYRRLERILKVLV 124 (358)
T ss_pred HhccchHHHHHHHHHH
Confidence 667777776644333
No 84
>PRK15015 carbon starvation protein A; Provisional
Probab=95.39 E-value=0.14 Score=53.44 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=85.8
Q ss_pred CCCCccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHH
Q 011580 30 DDGRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVD 109 (482)
Q Consensus 30 ~~~~~~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~ 109 (482)
+|+.+.-..+-+-.+-|=+.++-|+|.+-=|.--.+-||+++.+.+++-.+...--..+..-..... +.|+ +.+|
T Consensus 75 ~DG~DYvPt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R--~~Gr---Sig~ 149 (701)
T PRK15015 75 NDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTR--RDGR---SLGE 149 (701)
T ss_pred CCCCCcCcCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeec--CCCc---cHHH
Confidence 3444433334566888999999999999999999999999999998887776665555555432221 2333 9999
Q ss_pred HHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhh
Q 011580 110 AVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISM 146 (482)
Q Consensus 110 l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l 146 (482)
++++..|++++.+..+..++.+.....++.....+.+
T Consensus 150 ia~~~iG~~~~~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 150 LVKEEMGPTAGVIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888877777777666655
No 85
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=94.80 E-value=0.18 Score=51.50 Aligned_cols=114 Identities=16% Similarity=0.165 Sum_probs=88.9
Q ss_pred CCCCCccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHH
Q 011580 29 DDDGRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYV 108 (482)
Q Consensus 29 ~~~~~~~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~ 108 (482)
.+|+.+.-..+.+-.+.|=+-++-|+|.+-=|.--.|-||.+|.+.+++-++...--...++--...+ +.|+ |.+
T Consensus 43 ~nDG~DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR--~~G~---Si~ 117 (575)
T COG1966 43 KNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVR--HGGK---SIG 117 (575)
T ss_pred ccCCcccccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeec--cCCc---cHH
Confidence 45555555556788899999999999999999999999999999999888877776666666533221 3333 999
Q ss_pred HHHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhH
Q 011580 109 DAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMM 147 (482)
Q Consensus 109 ~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~ 147 (482)
|++++..|++.+.+..+...+.......++.......+.
T Consensus 118 ~ia~~~lG~~a~~~~~~~~l~iliiv~Avfa~vv~~~l~ 156 (575)
T COG1966 118 EIAGKYLGRTAKVFFLLLALILLILVGAVFAAVIAKLLA 156 (575)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988887777777777666665553
No 86
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.75 E-value=0.34 Score=48.39 Aligned_cols=76 Identities=17% Similarity=0.297 Sum_probs=59.2
Q ss_pred cHHHHHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcC
Q 011580 106 TYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQI 185 (482)
Q Consensus 106 ~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~ 185 (482)
-..+++++.||+.|+.+..+.+.+.|++++++.....++++..+.+ ..+++.|.++..+..+.++..
T Consensus 256 ~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~-------------k~~y~~~v~~~~l~s~~ia~~ 322 (378)
T TIGR00796 256 ILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP-------------KLSYKTWVIVFTLFSFIVANL 322 (378)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CCCHHHHHHHHHHHHHHHHHh
Confidence 6788999999999999999999999999999999999999987764 244566777666666555553
Q ss_pred CCcchhHHHH
Q 011580 186 PDFDQLWWLS 195 (482)
Q Consensus 186 ~~l~~l~~~s 195 (482)
.++.+-.++
T Consensus 323 -Gl~~Ii~~~ 331 (378)
T TIGR00796 323 -GLTQIISIS 331 (378)
T ss_pred -CHHHHHHHH
Confidence 355444443
No 87
>PLN00151 potassium transporter; Provisional
Probab=94.41 E-value=4.8 Score=43.71 Aligned_cols=118 Identities=10% Similarity=0.091 Sum_probs=55.0
Q ss_pred HHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHH-----HHHHHH
Q 011580 174 AFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIW-----RSFQAL 248 (482)
Q Consensus 174 i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 248 (482)
+..+++..|-.+++...=+.-..++-+..+++.. +.+..++.+.+..|.- ...++ +.....++ ..+..+
T Consensus 277 Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl~-i~~iGiynI~~~~p~V--l~Aln---P~Y~~~Ff~~~~~~gw~~L 350 (852)
T PLN00151 277 ISVAFLVILFSVQRFGTSKVGFAFGPALALWFCS-LGGIGIYNLVKYDSSV--FRAFN---PVYIYYFFKRNSTKAWSAL 350 (852)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhccHHHHHHHH-HHHHHHHHHHhcCHHH--HhhhC---HHHHHHHHHhCCCceEEEe
Confidence 3333433333333343334444556666666544 3345567766542210 01100 00001111 234567
Q ss_pred HHHHHHhcccchhHhhHhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhh
Q 011580 249 GDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA 303 (482)
Q Consensus 249 ~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~ 303 (482)
|-++.|.+|-..+. ++|-+=. ++--+..+..+....++-.=+|-..|+.
T Consensus 351 GgVvLciTGaEALf---ADLGHFg---~~sIqiaw~~~V~P~LlL~Y~GQaA~L~ 399 (852)
T PLN00151 351 GGCVLCATGSEAMF---ADLGYFS---VRSIQLAFTCLVLPCLLLAYMGQAAYLM 399 (852)
T ss_pred cceeeeeccchhhh---cccCCCC---ccceeeeehhhHHHHHHHHHcchHHHHh
Confidence 88888888887654 7787665 2333333444444444333345555554
No 88
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=93.94 E-value=0.46 Score=48.04 Aligned_cols=140 Identities=20% Similarity=0.355 Sum_probs=89.1
Q ss_pred HHhhhhhhhhh---HHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcCcceeeh
Q 011580 47 IITAVIGSGVL---SLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKIC 123 (482)
Q Consensus 47 l~~~~iG~GiL---slP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~i~ 123 (482)
+++++-.-|.- ..-....++|.+.++.+.++-+.+.+..+..-... .+..+|.+ -..+++++.+|+.|..+.
T Consensus 205 Ii~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~---~~~~~g~~--lL~~i~~~~~G~~G~~ll 279 (427)
T PF05525_consen 205 IINAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSF---PDDINGAE--LLSQIANHLFGSAGQILL 279 (427)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccc---cCCCCHHH--HHHHHHHHHcChhHHHHH
Confidence 33444444544 34444455666655555555444444333222111 11122322 577889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHHHHHHHHHH
Q 011580 124 GLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSF 203 (482)
Q Consensus 124 ~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 203 (482)
.+++.+.|+-++++.....+|+.++.++ ..+++.|.++++++.+.++... ++.+ +++..-+..+
T Consensus 280 ~iiv~lACLTTaIGL~~a~a~yf~~~~~-------------kisY~~~v~i~~i~S~~ian~G-l~~I--i~~s~PiL~~ 343 (427)
T PF05525_consen 280 GIIVFLACLTTAIGLISACAEYFSELFP-------------KISYKVWVIIFTIFSFIIANLG-LDQI--IKISVPILMF 343 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------ccChHHHHHHHHHHHHHHHHhC-HHHH--HHHHHHHHHH
Confidence 9999999999999999999999999887 4556788888887777766644 3333 3333444444
Q ss_pred HHHH
Q 011580 204 TYST 207 (482)
Q Consensus 204 ~~~~ 207 (482)
.+-.
T Consensus 344 iYP~ 347 (427)
T PF05525_consen 344 IYPV 347 (427)
T ss_pred HhHH
Confidence 4443
No 89
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=93.85 E-value=8.2 Score=38.99 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=42.5
Q ss_pred CCCccccchHHHHHHHHHhhhhhhhhh-HHHHHHHhhChhhHHHHHHHHHHHHHHHHH
Q 011580 31 DGRLKRTGTLWTASAHIITAVIGSGVL-SLAWATAQLGWIAGPSVMFLFSFVTYYTST 87 (482)
Q Consensus 31 ~~~~~~~~s~~~a~~~l~~~~iG~GiL-slP~af~~~G~~~gii~~~~~~~~~~~t~~ 87 (482)
+++++++.|.+||+..-+.+.+|+|=+ ...-|..-.| ...+.++.+++++..-+-.
T Consensus 12 ~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG-PGAiFWMWi~a~~Gmatk~ 68 (416)
T PF01235_consen 12 KKEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGG-PGAIFWMWISALLGMATKY 68 (416)
T ss_pred CCCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHH
Confidence 334455789999999999999999964 5888887555 4588888888776655444
No 90
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=93.59 E-value=9.4 Score=38.78 Aligned_cols=72 Identities=15% Similarity=0.137 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHH-hhC--hhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhh
Q 011580 39 TLWTASAHIITAVIGSGVLSLAWATA-QLG--WIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNL 115 (482)
Q Consensus 39 s~~~a~~~l~~~~iG~GiLslP~af~-~~G--~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~ 115 (482)
.....-+.+..-..|+|=|=.|-... ++| |+.+.+-+++.++.--.-+.+-... .|. ++++++++ .
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~-------~~~---~~~~l~~~-v 72 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAK-------SGG---GIEDLASR-V 72 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhh-------cCC---CHHHHhcc-c
Confidence 46667788889999999999998874 333 7778888877777555444333221 111 77777766 3
Q ss_pred cCccee
Q 011580 116 GGFQVK 121 (482)
Q Consensus 116 G~~~~~ 121 (482)
||+...
T Consensus 73 ~~~f~~ 78 (427)
T PF05525_consen 73 GPKFAL 78 (427)
T ss_pred CcHHHH
Confidence 444333
No 91
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=93.57 E-value=0.75 Score=45.64 Aligned_cols=132 Identities=18% Similarity=0.323 Sum_probs=87.7
Q ss_pred HHhhhhhhhhhHHH---HHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcCcceeeh
Q 011580 47 IITAVIGSGVLSLA---WATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKIC 123 (482)
Q Consensus 47 l~~~~iG~GiLslP---~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~i~ 123 (482)
++|+.=.-|+-.-. ...-..|++.++.+-++...+.+..+.--.. ..+..+|. .=..+..++.||+.|..+.
T Consensus 207 Iv~alk~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~---~~~~~nG~--~IL~~~s~~~fG~~G~~lL 281 (431)
T COG1114 207 IVNALKSKGVTTKKQIIKYTIKAGLIAAILLALIYLSLFYLGATSASA---AGLAANGG--QILSAYSQHLFGSYGSILL 281 (431)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhh---cccccchH--HHHHHHHHHHhchhhHHHH
Confidence 34444455555443 3334567776666666665555555111100 01112232 3567788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHHHH
Q 011580 124 GLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIV 197 (482)
Q Consensus 124 ~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 197 (482)
..++.+.|+-++++.+...+|+.++.++ ..++..|..++.++.+.++... ++++-..|.-
T Consensus 282 ~~iv~lACLTTaiGLi~a~aefF~~~~p-------------~~SY~~~v~if~i~sflvan~G-L~~Ii~isvP 341 (431)
T COG1114 282 GLIVFLACLTTAVGLIVACAEFFSKLVP-------------KLSYKTWVIIFTLISFLVANLG-LEQIIKISVP 341 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------cccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHH
Confidence 9999999999999999999999999887 4556778888888777766544 4555444443
No 92
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=91.65 E-value=17 Score=37.01 Aligned_cols=182 Identities=13% Similarity=0.104 Sum_probs=104.8
Q ss_pred ccHHHHHHhhhcC-cceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhh
Q 011580 105 YTYVDAVRSNLGG-FQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLS 183 (482)
Q Consensus 105 ~~y~~l~~~~~G~-~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~ 183 (482)
+|+.|....=++. +.|++..+.-.+..+.-.++.+...+..+..+++- +...-.++..++++...
T Consensus 104 yT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv--------------~~~vgv~ig~ilm~~Yv 169 (529)
T COG4147 104 YTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGV--------------PYHVGVVIGGILMMVYV 169 (529)
T ss_pred cchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC--------------CceeehhhHhHHHHHHH
Confidence 5999986555554 67777777777777777888888888888877751 22333455666666667
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC----CCccccc-c-ccccchhhHHHHHHHHHHHHHHhcc
Q 011580 184 QIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFR----GSLTGIS-I-GTVSETQKIWRSFQALGDIAFAYSY 257 (482)
Q Consensus 184 ~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~----~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~faf~~ 257 (482)
....++...|...+.-+..+...++...+...+...+.... ...+... . +...|.....+-.+.++...-=..|
T Consensus 170 v~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~G 249 (529)
T COG4147 170 VLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVG 249 (529)
T ss_pred HhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHc
Confidence 78889999999888776665544444444444332111100 0000000 0 0011111111222333333222334
Q ss_pred cchhHhhH-hhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhh
Q 011580 258 SIILIEIQ-DTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYA 302 (482)
Q Consensus 258 ~~~i~~i~-~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~ 302 (482)
..-+|.+. +--.-|+- |.-|+.+.++.....++|+..-+.|+.
T Consensus 250 TAgLPHil~RFfTvp~~--k~AR~Sv~wA~~fIg~fYi~~~~ig~~ 293 (529)
T COG4147 250 TAGLPHILMRFFTVPDA--KEARKSVFWATGFIGIFYILTPIIGAG 293 (529)
T ss_pred cCCCCeEEEEEEecCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445442 22222322 678999999999999999988777776
No 93
>PHA02764 hypothetical protein; Provisional
Probab=87.34 E-value=29 Score=33.51 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=61.9
Q ss_pred CccccchHHHHHH-HHHhhhhhhhhhHHHHHHHhh--ChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHH
Q 011580 33 RLKRTGTLWTASA-HIITAVIGSGVLSLAWATAQL--GWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVD 109 (482)
Q Consensus 33 ~~~~~~s~~~a~~-~l~~~~iG~GiLslP~af~~~--G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~ 109 (482)
..-|..+.+++++ |+.+...|.++ +.|+-++.. |.. .+...++.++++...+....+...+. |++|.. +.|-
T Consensus 9 GLVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAm-PrAGGd-YVYI- 83 (399)
T PHA02764 9 GIIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKF-PLNGGD-YAYI- 83 (399)
T ss_pred CceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCce-EEEh-
Confidence 4456678888887 66666666654 666644433 333 44556666667776666666755554 356653 4443
Q ss_pred HHHhhhcCcceeehHHHHHHHHHHHHH
Q 011580 110 AVRSNLGGFQVKICGLVQYLNLFGVAI 136 (482)
Q Consensus 110 l~~~~~G~~~~~i~~~~~~~~~~g~~~ 136 (482)
++++||+++++..+..++.......
T Consensus 84 --SRAFGP~~GFLvG~a~WLtl~~G~P 108 (399)
T PHA02764 84 --RTAFSSKFYTIFGISLWLTYVLSQP 108 (399)
T ss_pred --HHhhCccHHHHHHHHHHHHHHhhcc
Confidence 6789999999988888766544443
No 94
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=86.94 E-value=4.4 Score=41.18 Aligned_cols=121 Identities=18% Similarity=0.226 Sum_probs=77.1
Q ss_pred HHhhhhhhhhhH---HHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcCcceeeh
Q 011580 47 IITAVIGSGVLS---LAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKIC 123 (482)
Q Consensus 47 l~~~~iG~GiLs---lP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~i~ 123 (482)
+++++-.-|+-. .-....++|.+.++.+.++-+.+.+..+.--.. ..+..+|.+ =.....++.+|+.++.+.
T Consensus 209 ii~~i~~~G~~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~---~~~~~~g~~--il~~~~~~~~G~~G~~ll 283 (439)
T PRK15433 209 IVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASL---VDQSANGAA--ILHAYVQHTFGGGGSFLL 283 (439)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---ccCCCcHhH--HHHHHHHHHhCHHHHHHH
Confidence 344444444422 233334566666666555555555544311100 111112222 455667888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCC
Q 011580 124 GLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIP 186 (482)
Q Consensus 124 ~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~ 186 (482)
.+.+++.|+-++++.....++.+++.++ .+++.|.++.+++.++++...
T Consensus 284 ~iiv~lACLTTaIGLi~a~a~~f~~~~~--------------isY~~~v~i~~l~S~~lSn~G 332 (439)
T PRK15433 284 AALIFIACLVTAVGLTCACAEFFAQYVP--------------LSYRTLVFILGGFSMVVSNLG 332 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CcHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999887653 345677777888888777644
No 95
>PLN00149 potassium transporter; Provisional
Probab=86.93 E-value=52 Score=36.00 Aligned_cols=170 Identities=15% Similarity=0.076 Sum_probs=77.3
Q ss_pred HHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHH-----HHHHHH
Q 011580 174 AFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIW-----RSFQAL 248 (482)
Q Consensus 174 i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 248 (482)
+..+++..|-.+++...=+.-..++-+..+++.. +.+..++.+.+..|.- ...++ +.....++ ..+..+
T Consensus 201 is~~ILv~LF~~Q~~GT~kvg~~FgPIml~Wf~~-i~~iGiyni~~~~p~V--l~Aln---P~y~~~f~~~~~~~g~~~L 274 (779)
T PLN00149 201 VACIILIGLFALQHYGTHRVGFLFAPVVLTWLLC-ISAIGVYNIFHWNPHV--YQALS---PYYMYKFLKKTQRGGWMSL 274 (779)
T ss_pred HHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHH-HHHHHHHHHHhcCHhH--hhhcC---HHHHHHHHHHCCCceeEee
Confidence 3333333333333344434444566666666554 3445677776543210 11110 00011111 345678
Q ss_pred HHHHHHhcccchhHhhHhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCcccccccccccCCCchHHHHH
Q 011580 249 GDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIA 328 (482)
Q Consensus 249 ~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~i~~~~~~~~~~~~~~~~ 328 (482)
|-++.|.+|-..+. ++|-+=. ++--+..+..+..-.++-.=+|-..|+.-..+..+|+-+.|=...|+|+.--.
T Consensus 275 GgV~L~iTG~EALy---ADlGHF~---~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~~iP~~~~~P~ 348 (779)
T PLN00149 275 GGILLCITGSEAMF---ADLGHFS---QLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYVSVPEKLRWPV 348 (779)
T ss_pred cchhhcccchhhhh---hcccCCC---ccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHHhCCchhHHHH
Confidence 88889998887654 7887665 33333344444444444334555556654333223432222112455433333
Q ss_pred HHHHHHHHHHhhhhcccchHHHHHHHh
Q 011580 329 NAAIVIHLVGAYQVFCQPLFAFIEKQA 355 (482)
Q Consensus 329 ~~~~~~~~~~s~pl~~~p~~~~~~~~~ 355 (482)
-++..+..+.+-.-.+...+....+.+
T Consensus 349 ~vlAtlAaIIASQA~ISg~FSii~Qa~ 375 (779)
T PLN00149 349 LVIAILAAVVGSQAIITGTFSIIKQCS 375 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444443
No 96
>PLN00150 potassium ion transporter family protein; Provisional
Probab=85.34 E-value=62 Score=35.39 Aligned_cols=118 Identities=10% Similarity=0.090 Sum_probs=55.6
Q ss_pred HHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhH-----HHHHHHH
Q 011580 174 AFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKI-----WRSFQAL 248 (482)
Q Consensus 174 i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 248 (482)
+..+++..|-.+++...=+.-..++-+..+++.. +.+..++.+.+..|.- ...++ +.....+ ...+..+
T Consensus 217 is~~ILv~LF~iQ~~GT~kVg~~FgPIm~~Wf~~-i~~iGiyni~~~~p~V--l~Aln---P~y~~~ff~~~~~~g~~~L 290 (779)
T PLN00150 217 ISCVILVILFSLQRFGTHKVSFLFAPIFLCWFFS-LALIGCYNIIKWDKSV--FLAFN---PLYIVSFFIRNGRQGWESL 290 (779)
T ss_pred hHHHHHHHHHHHHhccchhhhhhhccHHHHHHHH-HHHHHHHHHHhcCHHH--HhhcC---HHHHHHHHHhCCCceEEEe
Confidence 3333433333334444444445566666666554 3445667766543210 01100 0000111 1334567
Q ss_pred HHHHHHhcccchhHhhHhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhh
Q 011580 249 GDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA 303 (482)
Q Consensus 249 ~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~ 303 (482)
|.++.|.+|-..+. ++|-+=. ++--+..+..+...+++-.=+|-..|+.
T Consensus 291 G~V~L~iTGaEALy---ADlGHFg---~~~Iriaw~~~V~P~LlL~Y~GQaA~ll 339 (779)
T PLN00150 291 GGIVLCMTGTEAMF---ADLGHFT---VKSMQIAFTSLVYPCLLLTYLGQAAYLV 339 (779)
T ss_pred cceeeeecchhhhh---ccccCCC---ccceeeeehhhHHHHHHHHHcchHHHHh
Confidence 88888888887654 7887665 2233333443443333333345444554
No 97
>PLN00148 potassium transporter; Provisional
Probab=83.86 E-value=72 Score=34.94 Aligned_cols=118 Identities=9% Similarity=0.062 Sum_probs=55.7
Q ss_pred HHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHH-----HHHHHH
Q 011580 174 AFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIW-----RSFQAL 248 (482)
Q Consensus 174 i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 248 (482)
+..+++..|-.+++...=+.-..++-+..+++.. +.+..++.+.+..|.- ....+ +.....++ ..+..+
T Consensus 200 is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~-i~~iGiyni~~~~p~V--l~Aln---P~y~~~ff~~~~~~g~~~L 273 (785)
T PLN00148 200 LACVILVGLFALQHCGTHRVAFMFAPIVIIWLLS-IGSIGLYNIIHWNPKI--IHALS---PYYIIKFFRVTGKDGWISL 273 (785)
T ss_pred HHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHH-HHHHHHHHHHhcCHHH--hhhcC---HHHHHHHHHhCCCceEEee
Confidence 4444444443334344434444566666666554 3445567766543210 11100 00011111 334577
Q ss_pred HHHHHHhcccchhHhhHhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhh
Q 011580 249 GDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA 303 (482)
Q Consensus 249 ~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~ 303 (482)
|.++.|.+|-..+. .+|-+=. ++--+..+..+..-.++-.=+|-..|+.
T Consensus 274 GgV~L~iTGaEALy---ADlGHFg---~~~Iriaw~~~V~P~L~L~Y~GQaA~ll 322 (785)
T PLN00148 274 GGILLSITGTEAMF---ADLGHFT---AASIRLAFATVIYPCLVVQYMGQAAFLS 322 (785)
T ss_pred cchheeccchhhhh---hhccCCC---ccceEEeeeehHHHHHHHHHcchHHHHh
Confidence 88888888887654 7887665 2222333333333333333345555554
No 98
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=81.96 E-value=63 Score=32.88 Aligned_cols=152 Identities=17% Similarity=0.116 Sum_probs=92.9
Q ss_pred cchhhHHHHHHHHHHHH-HHHHHhHHhhhcCCCcccccccccccCCCchHHHHHHHHHHH--HHHHhhhhcccchHHHHH
Q 011580 276 KTMKKASLISVGVTTLF-YMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVI--HLVGAYQVFCQPLFAFIE 352 (482)
Q Consensus 276 ~~~~~~~~~s~~~~~i~-Y~~~g~~gy~~fG~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~s~pl~~~p~~~~~~ 352 (482)
++.+++...+..+..+. .++....++..|+. ..++...+.-.+.++. ..+.+..... ....++|...++.+....
T Consensus 221 ~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~-~~~~~~~~il~~~~~~-~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~t 298 (415)
T COG0814 221 KNSKKAVRKAILIGSLIALVLYILVGFFVFGC-FGSLVFGNILAAKEQN-ISLLSALAGVINSPILSIALNIFALFAIAT 298 (415)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHccCch-HHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 56666455555555444 55788888888888 5556666553344444 3344444332 233788888888776655
Q ss_pred HHhhhhCCCCcccccccccCCCCCcccccchhHHHHHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhhhhHhhhhHHHHH
Q 011580 353 KQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPF-FNDVVGLLGALGFWPLTVYFPVEMYI 431 (482)
Q Consensus 353 ~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~-~~~v~~l~Ga~~~~~l~~ilP~~~~l 431 (482)
..+.....-.+..++.. ++.+.+..|..........+.+.++..|. +....+..|++..++.+-++|.++++
T Consensus 299 SFlgv~lg~~~~~~~~~-------~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~ 371 (415)
T COG0814 299 SFLGVYLGLFEGLADLF-------KKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFI 371 (415)
T ss_pred HHhCchhhHHHhhhHHH-------HhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 43221110000011110 11123344555666667777888888886 88888999999999999999999999
Q ss_pred HHhCC
Q 011580 432 AQKKI 436 (482)
Q Consensus 432 ~~~~~ 436 (482)
+-++.
T Consensus 372 ~p~~~ 376 (415)
T COG0814 372 KPRKL 376 (415)
T ss_pred HHHHh
Confidence 87544
No 99
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=71.10 E-value=63 Score=34.18 Aligned_cols=245 Identities=14% Similarity=0.091 Sum_probs=115.4
Q ss_pred cccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHh
Q 011580 35 KRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRS 113 (482)
Q Consensus 35 ~~~~s~~~a~~~l~~~~iG~Gi-LslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~ 113 (482)
-|+..++..-..++.+.+|++- +++|.--.+.|.-.....+. ......+ .++...+-.......+-.|.-++
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~-----~l~~~~~--~~~~f~Pvf~~~~v~~~~eYl~~ 116 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWN-----ALLSVLL--LGWIFIPVFYRLGVTTMYEYLEK 116 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHH-----HHHHHHh--hheEEEEEEEecCeeehhHHHHH
Confidence 4556677778888888888775 77888777776542222111 1111111 22211110111112344445566
Q ss_pred hhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHH
Q 011580 114 NLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWW 193 (482)
Q Consensus 114 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 193 (482)
-||+..+....+...+..+.-...++-.-+-.+++..+. ....-.++..+++........++..-+
T Consensus 117 Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~--------------~~~l~~~~~~~ic~~YT~~GGlkaVi~ 182 (585)
T KOG2349|consen 117 RFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGI--------------NLYLIVVILGLICVFYTALGGLKAVIW 182 (585)
T ss_pred HhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhcc--------------CceeehHHHHHHHHHHHHhcCeeEEEE
Confidence 677776666555555444433333333333333333321 111112234444555556666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------hhhhcCCCCCCccc---cccccccchhhHHHHH-HHHHHHHHHhcccchhHh
Q 011580 194 LSIVAAVMSFTYSTIGLGLGIA------KVAETGKFRGSLTG---ISIGTVSETQKIWRSF-QALGDIAFAYSYSIILIE 263 (482)
Q Consensus 194 ~s~~~~~~~~~~~~i~i~~~i~------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~faf~~~~~i~~ 263 (482)
.-.+.....+.-....+..... ...+....++..+. ...++ +-...+|..+ .....-.-.|..+.+..
T Consensus 183 TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp-~vr~t~W~~~~Gg~~~~l~~~~vnQ~~V- 260 (585)
T KOG2349|consen 183 TDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDP-TVRHTPWSLLFGGTIMWLSYYGVNQLIV- 260 (585)
T ss_pred hhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCC-cccccchhHhcCCcHHHHHHHhhhHHHH-
Confidence 7777766655422222222111 11111111111111 11222 2222456554 33444445556666655
Q ss_pred hHhhhCCCCccccchhhHHHHHHHHHHHHHHHH---HhHHhhhcC
Q 011580 264 IQDTVKSPPSESKTMKKASLISVGVTTLFYMLC---GCFGYAAFG 305 (482)
Q Consensus 264 i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~---g~~gy~~fG 305 (482)
++-+.-|+. |+.++.+.+......+..... |+.-|..|-
T Consensus 261 -QR~lsl~sl--k~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~ 302 (585)
T KOG2349|consen 261 -QRYLSLPSL--KHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYT 302 (585)
T ss_pred -hHHhccccH--HHhhhhhhhhhhHHHHHHHhhcccceeEeeecc
Confidence 444444443 677888777766666665554 444454553
No 100
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=69.46 E-value=1.4e+02 Score=30.74 Aligned_cols=261 Identities=16% Similarity=0.176 Sum_probs=123.9
Q ss_pred cccchHHHHHHHHHhhhhhhhhhHHHHHHHhhCh--hhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcc-cccHHHHH
Q 011580 35 KRTGTLWTASAHIITAVIGSGVLSLAWATAQLGW--IAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKR-NYTYVDAV 111 (482)
Q Consensus 35 ~~~~s~~~a~~~l~~~~iG~GiLslP~af~~~G~--~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~-~~~y~~l~ 111 (482)
+|+=++++-+..=+...++.+..-+..+--+.|+ ..+++.+.+--.+ ++..++-.. +.|.. ..++.-..
T Consensus 53 ~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~---~~~f~~lns-----~~G~~yhIsFpv~s 124 (572)
T KOG2466|consen 53 RRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLF---TAIFLVLNS-----RPGSDYHISFPVLS 124 (572)
T ss_pred cccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHH---HHHHHHHcc-----CCCcccccceeeee
Confidence 4555788777777777777777666666666774 3344433322222 122222211 12210 13555555
Q ss_pred HhhhcCcc---eeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCC--CCCC-CCccCCCchh--HHHHHHHHHhh
Q 011580 112 RSNLGGFQ---VKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSK--GDKN-PCHMNSNPYM--IAFGIVEIVLS 183 (482)
Q Consensus 112 ~~~~G~~~---~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~--~~~~-~~~~~~~~~~--~i~~~i~~pl~ 183 (482)
+..||-++ ..+.++.+....+|+. .-..++.++.++++...+.. ++.- .....+..++ +++-++.+|..
T Consensus 125 R~sFGiygS~~pIi~R~vma~vwYg~~---awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~ 201 (572)
T KOG2466|consen 125 RSSFGIYGSLWPIINRVVMACVWYGVN---AWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFY 201 (572)
T ss_pred eeehhhhHhHHHHHHHHHHHHhhhhhh---hhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhee
Confidence 66666543 4455555544444443 23445555555554322211 1111 1112222222 34444555555
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhHHHHHHHHHHHHHHh-cccchhH
Q 011580 184 QIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAY-SYSIILI 262 (482)
Q Consensus 184 ~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~i~ 262 (482)
+.| ..+++.+-....+.+.. .+++..++...+.++.. +.... ...++.....|.++.++...+-.| ....|.|
T Consensus 202 ~~~-p~~ir~lf~~ka~~t~f---A~~g~LIw~l~kAhG~G-~l~~~-~st~~gs~~aWa~~~~i~~~~~~fstl~~N~p 275 (572)
T KOG2466|consen 202 WFP-PYKIRHLFTWKAVLTPF---AAFGFLIWLLKKAHGLG-HLFDS-KSTVSGSAHAWAFVRSIMSCIANFSTLIVNAP 275 (572)
T ss_pred ecc-HHHhhhHHHHHHhhhHH---HHHHHHHHHHHhcCCcc-ccccC-CCcccccchhHHHHHHHHHHHhccchhhccCc
Confidence 444 55566555544444433 23333444444333311 11000 001333444566666666555555 5567888
Q ss_pred hhHhhhCCCCccccchhhHHHHHH----HHHHHHHHHHHhHHhhhcCCCc--cccccccc
Q 011580 263 EIQDTVKSPPSESKTMKKASLISV----GVTTLFYMLCGCFGYAAFGDLS--PGNLLTGF 316 (482)
Q Consensus 263 ~i~~~m~~p~~~~~~~~~~~~~s~----~~~~i~Y~~~g~~gy~~fG~~~--~~~i~~~~ 316 (482)
...+--|+|. ...-....+. .+..++=++.+..++..||.+- +-+++.++
T Consensus 276 DFsRF~ksp~----a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~ 331 (572)
T KOG2466|consen 276 DFSRFAKSPN----AIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQW 331 (572)
T ss_pred hhHhhcCCCC----ccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHH
Confidence 8888888884 2323333333 3333444455667778899863 33444443
No 101
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=66.29 E-value=1.5e+02 Score=29.63 Aligned_cols=148 Identities=10% Similarity=0.071 Sum_probs=91.8
Q ss_pred cccchHHHHHHHHHhhhhhhhh-hHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHH-H----chhcCCCCCCcccccHH
Q 011580 35 KRTGTLWTASAHIITAVIGSGV-LSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLA-A----CYRSGDPVTGKRNYTYV 108 (482)
Q Consensus 35 ~~~~s~~~a~~~l~~~~iG~Gi-LslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~-~----~~~~~~~~~g~~~~~y~ 108 (482)
.|+.+.+-..++...+-+|+.- ++=|-+-.+.|+- .+++...-+-+.+-.+..+ + -+++.. ..|..
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~Glg--wvlLa~iqvp~~~l~lgvlgkk~~~~ar~~n------AltI~ 109 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLG--WVLLAMIQVPTVWLALGVLGKKFAILAREYN------ALTIN 109 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhchH--HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhC------CeeHH
Confidence 3444444455555555555543 3446666666653 3444444444433333332 2 223222 24777
Q ss_pred HHHHhh-hcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCC
Q 011580 109 DAVRSN-LGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPD 187 (482)
Q Consensus 109 ~l~~~~-~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~ 187 (482)
|+-++= =++.-.|+..+.+.+...+..++..+..++.++...+ .++..-++++++.+..-.....
T Consensus 110 D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~g--------------idY~tgL~ifa~~V~iYt~fGG 175 (473)
T COG4145 110 DLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALG--------------IDYTTGLLIFAVSVAIYTAFGG 175 (473)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHC--------------CCchhhHHHHHHHHHHHHhhcc
Confidence 776554 3556678888888889999999999999999988774 3445667788888888888888
Q ss_pred cchhHHHHHHHHHHHHH
Q 011580 188 FDQLWWLSIVAAVMSFT 204 (482)
Q Consensus 188 l~~l~~~s~~~~~~~~~ 204 (482)
++.....-.+.-..++.
T Consensus 176 FRAvvltD~IQG~vmli 192 (473)
T COG4145 176 FRAVVLTDTIQGLVMLI 192 (473)
T ss_pred eeeeehHHHHHHHHHHH
Confidence 88777666655544443
No 102
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=60.33 E-value=1.9e+02 Score=29.08 Aligned_cols=97 Identities=20% Similarity=0.183 Sum_probs=52.3
Q ss_pred HHHhhhhhhhhhHHHHHHHhhChhhHHH--HHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcCcceeeh
Q 011580 46 HIITAVIGSGVLSLAWATAQLGWIAGPS--VMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKIC 123 (482)
Q Consensus 46 ~l~~~~iG~GiLslP~af~~~G~~~gii--~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~i~ 123 (482)
...-+-+|.|-++ ...+.|--.|.- +.++.+.+..+...-+. .| .--.+|+ +..|..++-++|+.++..
T Consensus 12 lva~a~idPG~i~---t~~~aGa~fGy~LLW~llls~~~~~~~Q~~a--aR-lg~vTg~---~l~~~~r~~~~~~~~~~~ 82 (390)
T TIGR01197 12 LMSIAYIDPGNYS---TDLQAGAAAGYKLLWVLLLSNIMALLLQRLC--AR-LGVVTGL---DLAEVCREHYPKVPRITL 82 (390)
T ss_pred HHHHHhcCchHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH--HH-heeecCC---CHHHHHHHHCCCchHHHH
Confidence 3444556666666 224444433433 33333333333322222 22 1113443 889999999998777666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHhhh
Q 011580 124 GLVQYLNLFGVAIGYTIASSISMMAIER 151 (482)
Q Consensus 124 ~~~~~~~~~g~~~~y~i~~~~~l~~i~~ 151 (482)
-+...+...+...+.....+.-++.+++
T Consensus 83 ~~~~~l~ii~~~~~e~~G~a~al~ll~g 110 (390)
T TIGR01197 83 WILAELAIIATDMAEVIGTAIALNLLSH 110 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5555555566666666666666665553
No 103
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=59.43 E-value=2.1e+02 Score=29.21 Aligned_cols=64 Identities=25% Similarity=0.217 Sum_probs=44.9
Q ss_pred CccccchHHHHHHHHHhhhhhhhhhH-HHHHHHhhChhhHHHHHHHHHHHHHHHHH---HHHHchhcCC
Q 011580 33 RLKRTGTLWTASAHIITAVIGSGVLS-LAWATAQLGWIAGPSVMFLFSFVTYYTST---LLAACYRSGD 97 (482)
Q Consensus 33 ~~~~~~s~~~a~~~l~~~~iG~GiLs-lP~af~~~G~~~gii~~~~~~~~~~~t~~---~l~~~~~~~~ 97 (482)
+.++..|.+|+...-+.+.+|+|=++ ..-|.+-.| ...+.++.+++++..-+.. .|..-+|..|
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GG-PGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd 125 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGG-PGAVFWMWIVALFGMATKFAESTLAQKYRVKD 125 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCC-CccHHHHHHHHHHHHHHHHHHHHHHhheeEeC
Confidence 34455689999999999999999654 888887555 4588888777776555443 4444444333
No 104
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=58.95 E-value=2.2e+02 Score=29.21 Aligned_cols=71 Identities=10% Similarity=0.071 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHH-hhC--hhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhh
Q 011580 39 TLWTASAHIITAVIGSGVLSLAWATA-QLG--WIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNL 115 (482)
Q Consensus 39 s~~~a~~~l~~~~iG~GiLslP~af~-~~G--~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~ 115 (482)
..+..-+.++.-..|+|=|=.|-... ++| |..+.+-+++.++.--.-+.+-+. + .| . +++|++++ .
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava--~-----~~-g--~~~~l~~r-v 77 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALA--K-----VG-G--GVDSLSTP-I 77 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh--h-----cC-C--CHHHHhhh-c
Confidence 46778888999999999999998884 444 666666666666543333222221 1 11 1 77777766 3
Q ss_pred cCcce
Q 011580 116 GGFQV 120 (482)
Q Consensus 116 G~~~~ 120 (482)
||+..
T Consensus 78 ~~~f~ 82 (439)
T PRK15433 78 GKVAG 82 (439)
T ss_pred chHHH
Confidence 44433
No 105
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=58.65 E-value=93 Score=27.44 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=26.2
Q ss_pred HHhhChhhHHHHHHHHHHHHHHHHHHHHHchhc
Q 011580 63 TAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRS 95 (482)
Q Consensus 63 f~~~G~~~gii~~~~~~~~~~~t~~~l~~~~~~ 95 (482)
|..--...|++.+++.++...++++++.+-..+
T Consensus 118 f~~nA~~~GlItlll~a~vgGfamy~my~y~yr 150 (226)
T COG4858 118 FQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYR 150 (226)
T ss_pred HhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444456679999999999999999999885553
No 106
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=49.81 E-value=3.3e+02 Score=28.60 Aligned_cols=46 Identities=24% Similarity=0.136 Sum_probs=40.6
Q ss_pred cHHHHHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhh
Q 011580 106 TYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIER 151 (482)
Q Consensus 106 ~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~ 151 (482)
...++-....||++...+....++..+..+++-++..++.....-.
T Consensus 326 p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaR 371 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFAR 371 (550)
T ss_pred hHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhc
Confidence 6778888889999999999999999999999999999998877665
No 107
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=49.15 E-value=3.5e+02 Score=28.71 Aligned_cols=45 Identities=13% Similarity=0.009 Sum_probs=27.3
Q ss_pred HHHHHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhh
Q 011580 107 YVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIER 151 (482)
Q Consensus 107 y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~ 151 (482)
+.+..+...+++...++.+......+++..+.+...++.+...-.
T Consensus 301 ~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amar 345 (557)
T TIGR00906 301 FPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMAR 345 (557)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333333345556666666666777777777777777766654
No 108
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=45.20 E-value=2.6e+02 Score=25.94 Aligned_cols=93 Identities=18% Similarity=0.155 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcccchhHhhHhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCcccccccccccCCCchHH
Q 011580 246 QALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLL 325 (482)
Q Consensus 246 ~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~i~~~~~~~~~~~~~ 325 (482)
..+-++-|-|. |....-+++-.|+-+ |+.+|.+....=++.+.-.++|+.....+-+... ..||- +...|..
T Consensus 59 P~lMviGfI~l-~GeAiL~YR~~r~~~---k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~---i~Nfy-SLHSWlG 130 (245)
T KOG1619|consen 59 PVLMVIGFIYL-QGEAILIYRVFRYTS---KKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG---IANFY-SLHSWLG 130 (245)
T ss_pred hHHHHHHHHHh-ccceeeeeehhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---cccee-eHHHHHH
Confidence 33344444443 333344556555544 7899999999999999999999998888887665 33331 3578999
Q ss_pred HHHHHHHHHHHHHhhhhcccc
Q 011580 326 DIANAAIVIHLVGAYQVFCQP 346 (482)
Q Consensus 326 ~~~~~~~~~~~~~s~pl~~~p 346 (482)
..+-.++..+....+--+..|
T Consensus 131 l~~v~ly~~Q~v~GF~tfl~p 151 (245)
T KOG1619|consen 131 LCVVILYSLQWVFGFFTFLFP 151 (245)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 888888999888888554443
No 109
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=45.20 E-value=3.9e+02 Score=28.07 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhhhhhhh-hhHHHHHHHhhCh
Q 011580 39 TLWTASAHIITAVIGSG-VLSLAWATAQLGW 68 (482)
Q Consensus 39 s~~~a~~~l~~~~iG~G-iLslP~af~~~G~ 68 (482)
|..+-+...++..+|-| +.-.|+-..+-|-
T Consensus 6 ~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG 36 (523)
T PF00209_consen 6 SKIGFILACIGYAVGLGNIWRFPYLCYENGG 36 (523)
T ss_dssp -HHHHHHHHHHHHSSHHHHTHHHHHHHHTTT
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 45677888899999998 7889999876664
No 110
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=44.32 E-value=1.5e+02 Score=30.19 Aligned_cols=148 Identities=20% Similarity=0.217 Sum_probs=82.3
Q ss_pred hhhhhhhhhHHHHHHHh------hChhhHHHHHHHHHHHHHHHHHHHHHchh--cCCCCCCcccccH-HHHHHhhhcCcc
Q 011580 49 TAVIGSGVLSLAWATAQ------LGWIAGPSVMFLFSFVTYYTSTLLAACYR--SGDPVTGKRNYTY-VDAVRSNLGGFQ 119 (482)
Q Consensus 49 ~~~iG~GiLslP~af~~------~G~~~gii~~~~~~~~~~~t~~~l~~~~~--~~~~~~g~~~~~y-~~l~~~~~G~~~ 119 (482)
.+=.|.|.-....+-++ -|++..+-.++=.-+++..|+..++-... ..+..+|. +. .+--+..+|.++
T Consensus 231 SNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~---~l~~~Af~~~~g~~g 307 (416)
T PF01235_consen 231 SNEAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGA---ALTQAAFSTVLGSWG 307 (416)
T ss_pred cCCCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHH---HHHHHHHHHhhhhhH
Confidence 34445555555555433 35554444444455566666666665432 11111111 22 222233467788
Q ss_pred eeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHHHHHH
Q 011580 120 VKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAA 199 (482)
Q Consensus 120 ~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 199 (482)
.+++.+++.+..|.+.+++....-+++..++++. ... ..+-+++ +...++....+++.+-.++=+.+
T Consensus 308 ~~~v~i~l~lFafTTilg~~~yge~~~~yl~~~~---------~~~---~~~ri~~-i~~~~~G~~~~~~~vW~~~Di~~ 374 (416)
T PF01235_consen 308 PYFVAIALFLFAFTTILGWYYYGEKCAEYLFGGK---------KAI---WIYRILF-IAMVFIGAVIDLDLVWDLADIAN 374 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---------eEE---Eeeeehh-hhhhhhhhcccchhHHHHHHHHH
Confidence 9999999999999999999999999999888321 001 1111222 22233334455666666666666
Q ss_pred HHHHHHHHHHHHH
Q 011580 200 VMSFTYSTIGLGL 212 (482)
Q Consensus 200 ~~~~~~~~i~i~~ 212 (482)
.+..+.-++.+.+
T Consensus 375 ~lmai~Nlial~l 387 (416)
T PF01235_consen 375 GLMAIPNLIALLL 387 (416)
T ss_pred HHHHHHHHHHHHH
Confidence 6666555544443
No 111
>PLN02680 carbon-monoxide oxygenase
Probab=41.58 E-value=2.9e+02 Score=25.56 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=50.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhcccch
Q 011580 276 KTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPL 347 (482)
Q Consensus 276 ~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 347 (482)
|+.+|.+....-...++..++|+.....+.++. ++ .|+- +...|+....-+++.++.+..+..+..|-
T Consensus 76 k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~~-~nfy-SlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 76 KNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--GI-DNFY-SLHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--Cc-cccc-cHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 667888999999999999999996655555543 33 3331 35689998888999999998887666553
No 112
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=38.32 E-value=1.7e+02 Score=25.20 Aligned_cols=68 Identities=13% Similarity=0.143 Sum_probs=52.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhcccch
Q 011580 276 KTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPL 347 (482)
Q Consensus 276 ~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 347 (482)
|+.+|.+....-...++-.++|+.....+-++.+ + .|+- +...|+..+.-+++.++.+..+..+..|.
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~--~-~~fy-SlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAKN--I-PNMY-SLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHccccC--C-Cccc-cHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 6678888999988899889999977666665432 2 2331 35689998999999999999998877775
No 113
>PRK09928 choline transport protein BetT; Provisional
Probab=37.43 E-value=5.4e+02 Score=28.09 Aligned_cols=145 Identities=8% Similarity=-0.072 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcCcceeehHHH--------HHHHHHHHHHHHH
Q 011580 68 WIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLV--------QYLNLFGVAIGYT 139 (482)
Q Consensus 68 ~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~i~~~~--------~~~~~~g~~~~y~ 139 (482)
.++....++-+++...++.++... .-.++++..-.....-+..+. ........+..+.
T Consensus 358 lvPsl~~~~WfsIfGgsal~l~~~--------------g~~~l~~~~~~~~~~alf~~l~~lP~~~i~~~l~~il~~iFf 423 (679)
T PRK09928 358 IIPFTFTLLWLSIFGNSALYEIIH--------------GNAAFAEEAMAHPERGFYSLLAQYPAFTFSASVATITGLLFY 423 (679)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHc--------------CCccHHHHhhcchhhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhHHhhhhccccCC-CCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011580 140 IASSISMMAIERSNCFHSK-GDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVA 218 (482)
Q Consensus 140 i~~~~~l~~i~~~~~~~~~-~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~ 218 (482)
+..+|+....+...+-... +...+..+.+..|.++.+++...+.....++.++..+.++.+=....+++++...+....
T Consensus 424 vTSaDS~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii~alPf~~I~ll~~~sl~k~l~ 503 (679)
T PRK09928 424 VTSADSGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGLPFSFVIFFVMAGLYKSLK 503 (679)
T ss_pred HhcchHHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcCCCCCC
Q 011580 219 ETGKFRGS 226 (482)
Q Consensus 219 ~~~~~~~~ 226 (482)
.+..+...
T Consensus 504 ~e~~~~~~ 511 (679)
T PRK09928 504 VEDYRRAS 511 (679)
T ss_pred hhHHHhhh
No 114
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=36.50 E-value=2.5e+02 Score=23.82 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=50.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhcccch
Q 011580 276 KTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPL 347 (482)
Q Consensus 276 ~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 347 (482)
|+..|.+....-...++-..+|+..-..+.++. + ..|+- +...|+....-+++.++.+..+..+..|.
T Consensus 37 k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~--~-~~hf~-SlHswlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (143)
T cd08763 37 KRSTKILHGLLHIMALVISLVGLVAVFDYHQAN--G-YPDMY-SLHSWCGILTFVLYFLQWLIGFSFFLFPG 104 (143)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--C-CCccc-cHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 556777889999999998899987766665543 2 23331 35689998999999999999988776664
No 115
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=35.92 E-value=45 Score=22.00 Aligned_cols=30 Identities=27% Similarity=0.394 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHhhhcCCC
Q 011580 278 MKKASLISVGVTTLFYMLCGCFGYAAFGDL 307 (482)
Q Consensus 278 ~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~ 307 (482)
+..+..+++.+..++..+.|..-|.+||.-
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 344566777777777778888888888864
No 116
>TIGR00909 2A0306 amino acid transporter.
Probab=35.47 E-value=3.7e+02 Score=27.17 Aligned_cols=47 Identities=13% Similarity=-0.005 Sum_probs=39.8
Q ss_pred cHHHHHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhh
Q 011580 106 TYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERS 152 (482)
Q Consensus 106 ~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~ 152 (482)
...+..++..|+++..++.+...+..++++.+.+...++.+....+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 265 PLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45667777788888889999999999999999999999999877753
No 117
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=33.13 E-value=1.4e+02 Score=31.14 Aligned_cols=144 Identities=16% Similarity=0.046 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcC-cceeehHHHHHHHHHHHHHHHHHHhhhhh
Q 011580 68 WIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGG-FQVKICGLVQYLNLFGVAIGYTIASSISM 146 (482)
Q Consensus 68 ~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~-~~~~i~~~~~~~~~~g~~~~y~i~~~~~l 146 (482)
.++++..++-.++...++.++-.......... .+. +.++.....+.. ....+......+.. ..+++...|..
T Consensus 341 ~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~-~~~--g~~~a~~~~l~~lP~~~i~~~~~lil~----~~f~vTs~DS~ 413 (485)
T PF02028_consen 341 LVPSLFCFLWFSIFGGYALYLQLSGAGDLAAA-NEQ--GPEAALFAFLEQLPLSKILSILFLILI----FIFFVTSADSA 413 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHH-HHH---HHHHHHHHHHTSTTHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHCchHHhhHhhhhhhHHHH-hhc--chhhHHHHHHHHhhHHHHHHHHHHHHH----HHHHHhcccHH
Q ss_pred HHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 011580 147 MAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAET 220 (482)
Q Consensus 147 ~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~ 220 (482)
...+.....++ +.++..+.+..|.++.+++...+.....++.++.++.++.+=....+++.+...+....+|
T Consensus 414 ~~~la~~s~~~--~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~l~~d 485 (485)
T PF02028_consen 414 TYVLAMLSSKG--DEEPPRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKALKED 485 (485)
T ss_dssp HHHHHHHHCTT--TSSS-HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCC--CCCCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 118
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=32.18 E-value=4e+02 Score=24.36 Aligned_cols=70 Identities=16% Similarity=0.105 Sum_probs=50.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhcccch
Q 011580 276 KTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPL 347 (482)
Q Consensus 276 ~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 347 (482)
|+..|.+....-...++..++|+.....+-++....+ .|+- +...|+....-+++.++.+..+..+..|.
T Consensus 54 k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~-~hfy-SlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~ 123 (214)
T cd08764 54 KKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPI-PNMY-SLHSWLGLTAVILFSLQWVGGFVSFLFPG 123 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-Cccc-chHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556888888888888888899766555655544343 3331 35789998888889999999986665553
No 119
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=31.73 E-value=2.8e+02 Score=22.51 Aligned_cols=66 Identities=9% Similarity=0.212 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHHhh---ChhhHHHHHHHHHHH----HHHHHHHHHHchhcCCCCCCcccccHHHH
Q 011580 39 TLWTASAHIITAVIGSGVLSLAWATAQL---GWIAGPSVMFLFSFV----TYYTSTLLAACYRSGDPVTGKRNYTYVDA 110 (482)
Q Consensus 39 s~~~a~~~l~~~~iG~GiLslP~af~~~---G~~~gii~~~~~~~~----~~~t~~~l~~~~~~~~~~~g~~~~~y~~l 110 (482)
.|......+.-.++|+..+.+....... |-..-...+++.|++ ..|-.+++..+.+. .+-++|.++
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~rg------~~Gysf~~I 112 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWRG------YKGYSFDDI 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHcC------CCCCCHhhC
Confidence 4555566666667777766666554322 111111222233333 44566666665553 223677765
No 120
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=31.67 E-value=7.2e+02 Score=27.19 Aligned_cols=168 Identities=13% Similarity=0.100 Sum_probs=75.5
Q ss_pred HHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccccchhhH-----HHHHHHH
Q 011580 174 AFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKI-----WRSFQAL 248 (482)
Q Consensus 174 i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 248 (482)
+..+++..|-..++...-+.-..++-++.+++..+ .+..++.+.+..|. -....+ +.....+ +..+..+
T Consensus 171 it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l-~~~Gi~~I~~~~P~--Vl~Aln---P~ya~~f~~~~~~~~~~~L 244 (688)
T TIGR00794 171 ISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLL-AGIGIYNIVKFNPE--VLKALS---PYYAVQFFIEYGTVGWVSL 244 (688)
T ss_pred HHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHH-HHHHHHHHHhcCHH--HHhHhC---HHHHHHHHHHCCCceeeec
Confidence 33334333433344444444555677777765543 33556666552221 011100 0001111 1334567
Q ss_pred HHHHHHhcccchhHhhHhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCcccccccccccCCCchHHHHH
Q 011580 249 GDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIA 328 (482)
Q Consensus 249 ~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~i~~~~~~~~~~~~~~~~ 328 (482)
|.++.|.+|-+.+ +++|-+=.+ +.+ +..+..+...+++--=+|-..|+.=.. +.+.+-|=...|+|+..-.
T Consensus 245 G~V~L~iTGaEAL---yADmGHFg~--~~I-r~aw~~~V~P~L~LnY~GQgA~ll~~p---~~~~NpFf~~~P~~~~~p~ 315 (688)
T TIGR00794 245 GGVVLSITGVEAM---FADLGHFGK--LPI-QLAWFTFVYPSLILCYIGQAAYLSKHP---EAIKNPFFLSIPDWALWPL 315 (688)
T ss_pred cchhheeccHhhh---hcccCCCCc--ccc-eeehHHHHHHHHHHHHcchHHHHhcCc---chhcCcHHHhCchHHHHHH
Confidence 8888888887654 588877652 223 333443443333333344444554222 2222211112456654444
Q ss_pred HHHHHHHHHHhhhhcccchHHHHHHHhh
Q 011580 329 NAAIVIHLVGAYQVFCQPLFAFIEKQAH 356 (482)
Q Consensus 329 ~~~~~~~~~~s~pl~~~p~~~~~~~~~~ 356 (482)
-++..+..+.+-.-.+...+....+.+.
T Consensus 316 ~vlAtlAtIIASQA~IsG~FSl~~Qai~ 343 (688)
T TIGR00794 316 FIIATLAAIIASQAVISGVFSITSQAVR 343 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444544443
No 121
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=31.57 E-value=52 Score=21.44 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhcCC
Q 011580 282 SLISVGVTTLFYMLCGCFGYAAFGD 306 (482)
Q Consensus 282 ~~~s~~~~~i~Y~~~g~~gy~~fG~ 306 (482)
..++..+..++-.++|...|.+||.
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCC
Confidence 4556667777777888888889986
No 122
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=30.16 E-value=2.3e+02 Score=24.06 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=48.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhcccch
Q 011580 276 KTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPL 347 (482)
Q Consensus 276 ~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 347 (482)
|+.+|.+....-...++..++|+.....+-++. .+..-+ +...|+....-+++.++.+..+..+..|.
T Consensus 37 k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~~~~--SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 37 REVQKAVHLTLHLVALVLGIVGIYAAFKFHNEV--GIPNLY--SLHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--Cccccc--cHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 567788899999999999999996555555543 222221 25689888888888989888876666554
No 123
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=29.09 E-value=4.1e+02 Score=23.52 Aligned_cols=68 Identities=13% Similarity=0.099 Sum_probs=51.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhcccch
Q 011580 276 KTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPL 347 (482)
Q Consensus 276 ~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 347 (482)
|+.+|.+....-..+++..++|+.....+-++. .+.+.+ +...|+....-.++.++.+..+..+..|.
T Consensus 67 k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~--~~~nly--SlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~ 134 (179)
T cd08762 67 KLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH--HTANLY--SLHSWVGICTVALFTCQWVMGFTSFLLPW 134 (179)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--Cccchh--hHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 667888999999999999999997777776653 333322 25689888888888999988887666553
No 124
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=28.85 E-value=1.6e+02 Score=26.43 Aligned_cols=61 Identities=13% Similarity=-0.010 Sum_probs=39.5
Q ss_pred HHHhhhhhhhhhHhhhhHHHHHHHhCCCc----------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011580 410 VGLLGALGFWPLTVYFPVEMYIAQKKIPK----------WSTKWLCLQILSVACLIITIAAAAGSIAGVVT 470 (482)
Q Consensus 410 ~~l~Ga~~~~~l~~ilP~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~v~g~~~si~~ii~ 470 (482)
.=+.|++.++-+..++|+...+..++++. ++.+-....+...++++-+.++...|..++.+
T Consensus 47 vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 47 VWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred heecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34567888888889999999999888732 11122233334556666666666666666655
No 125
>CHL00020 psbN photosystem II protein N
Probab=28.80 E-value=49 Score=21.52 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCC
Q 011580 281 ASLISVGVTTLFYMLCGCFGYAAFGDL 307 (482)
Q Consensus 281 ~~~~s~~~~~i~Y~~~g~~gy~~fG~~ 307 (482)
+..+++.+..++..+.|..-|.+||..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 345666677777777777778888863
No 126
>PRK11281 hypothetical protein; Provisional
Probab=28.51 E-value=7.5e+02 Score=28.90 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=24.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 011580 276 KTMKKASLISVGVTTLFYMLCGCFGYAAFGD 306 (482)
Q Consensus 276 ~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~ 306 (482)
..-++++.++...+....+.+..+||+.+..
T Consensus 540 ~~T~~al~~t~l~alp~~l~~~~~g~~~~~~ 570 (1113)
T PRK11281 540 LHTPKAILITLLLALPVTLIFLAVGLILLTD 570 (1113)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456778888888888888888899987764
No 127
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=27.90 E-value=88 Score=31.44 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=16.2
Q ss_pred CccccchHHHHHHHHHhhhhhhhh
Q 011580 33 RLKRTGTLWTASAHIITAVIGSGV 56 (482)
Q Consensus 33 ~~~~~~s~~~a~~~l~~~~iG~Gi 56 (482)
..++.+....+++.++-..+|+|.
T Consensus 31 ~~~~~g~~l~~~aili~la~g~g~ 54 (390)
T PRK10920 31 SKNRTGLVLSAVAIAIALAAGAGL 54 (390)
T ss_pred CCCCccHHHHHHHHHHHHHHhhHH
Confidence 345556667777777777777775
No 128
>PRK09950 putative transporter; Provisional
Probab=26.25 E-value=7.8e+02 Score=25.84 Aligned_cols=155 Identities=8% Similarity=0.030 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhH
Q 011580 68 WIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMM 147 (482)
Q Consensus 68 ~~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~ 147 (482)
.++....++..++...++.++.............+. +.++.....+...- ..-.........+..+++...|+..
T Consensus 350 ~~psl~~~~wf~ifGg~ai~l~~~g~~~~~~~~~~~--~~~~a~~~~l~~lP---~~~i~~~l~~vl~~if~vTs~DS~s 424 (506)
T PRK09950 350 LGSSVGCWFFFGVLESYAIHQFINGVINVPQILNTL--GGETAVQQLLSSLP---AGKLFLAAYLGIMIIFLASHMDAVA 424 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHcc--CcchHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHhhhHHH
Q ss_pred HhhhhccccCCCCC-CCCccCCCchhHHHHHHHHHhhcCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 011580 148 AIERSNCFHSKGDK-NPCHMNSNPYMIAFGIVEIVLSQIPD-FDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRG 225 (482)
Q Consensus 148 ~i~~~~~~~~~~~~-~~~~~~~~~~~~i~~~i~~pl~~~~~-l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~ 225 (482)
..+.....+....+ ++..+.+..|.++.+.+...+..... ++.++..+.++.+=....++ .+...+.+..++.+.|.
T Consensus 425 ~vla~~ts~g~~~~~~P~~~~ri~W~i~~g~ia~~Ll~~gG~l~~lQ~~~ii~alP~~~i~~-l~~~s~~k~l~~d~~~~ 503 (506)
T PRK09950 425 YTMAATSTRNLREGDDPDRGLRLFWCVVITLIPLSILFTGASLDTMKTTVVLTALPFLVILL-IKVYGFIRWLKQDYADV 503 (506)
T ss_pred HHHHHHHcCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhchhcC
Q ss_pred Ccc
Q 011580 226 SLT 228 (482)
Q Consensus 226 ~~~ 228 (482)
+..
T Consensus 504 ~~~ 506 (506)
T PRK09950 504 PAH 506 (506)
T ss_pred CCC
No 129
>PRK12768 CysZ-like protein; Reviewed
Probab=26.00 E-value=5.4e+02 Score=23.94 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=22.1
Q ss_pred hHhhhCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 011580 264 IQDTVKSPPSESKTMKKASLISVGVTTLFYMLCG 297 (482)
Q Consensus 264 i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g 297 (482)
-.+++.|| ++++++..+.+.+..++...+
T Consensus 8 a~~ql~~~-----~~r~vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 8 ALARLLSP-----PMRSVFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HHHHhCCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 34677777 488899988888888777654
No 130
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=25.24 E-value=8.8e+02 Score=26.13 Aligned_cols=261 Identities=16% Similarity=0.154 Sum_probs=112.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcCcceeehHHHHHHHHHHHHHHH---HHHhhhh
Q 011580 69 IAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGY---TIASSIS 145 (482)
Q Consensus 69 ~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y---~i~~~~~ 145 (482)
+.|++.++++++.-.-+.+-+.-..+..+..+|. ....-.+.++.-.++.++ +....-.+|.|..| ++.-+-+
T Consensus 49 vlGvlSLIfWtL~livtiKYv~ivlrADn~GEGG-i~AL~aL~~~~~~~~~~~---~l~~lgl~Gaal~~gDgvITPAIS 124 (622)
T PRK10745 49 VFGFLSLIFWLLILVVSIKYLTFVMRADNAGEGG-ILTLMSLAGRNTSARTTS---MLVIMGLIGGSFFYGEVVITPAIS 124 (622)
T ss_pred eehhhHHHHHHHHHHHHHHhheEEEecCCCCCch-HHHHHHHHhhhcccchhH---HHHHHHHHHHHHHhhccccchhHH
Confidence 4688888888888888887777666654433333 233334443222223332 34455566666543 1111111
Q ss_pred hHHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 011580 146 MMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRG 225 (482)
Q Consensus 146 l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~ 225 (482)
+-.-.++.. . ..+ ..+.. .+-+..+++..|-..++...-+.-..++-++.+.+..+. ...++.+.+++.
T Consensus 125 VLSAVEGL~--v---~~p-~l~~~-Vvpit~~ILv~LF~iQ~~GT~~vG~~FgPIm~vWF~~i~-~~Gi~~I~~~P~--- 193 (622)
T PRK10745 125 VMSAIEGLE--I---VAP-QLDTY-IVPLSIIVLTLLFMIQKHGTGMVGKLFAPIMLTWFLTLA-VLGLRSIIANPE--- 193 (622)
T ss_pred HHHHhhccc--c---cCC-CCCCc-cHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHH-HHHHHHHhcCHH---
Confidence 112222211 0 011 22222 222333333333333334444445566777777655433 345666654311
Q ss_pred CccccccccccchhhH-----HHHHHHHHHHHHHhcccchhHhhHhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHH
Q 011580 226 SLTGISIGTVSETQKI-----WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFG 300 (482)
Q Consensus 226 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~g 300 (482)
-....+ +.....+ +..+..+|.++.|-+|-+. ++++|-+=.+ +.. +..+..+...+++--=+|-..
T Consensus 194 Vl~Aln---P~ya~~f~~~~~~~gf~~LG~V~L~vTGaEA---LYADmGHFG~--~~I-r~aW~~~v~P~L~LnY~GQgA 264 (622)
T PRK10745 194 VLHALN---PMWAVHFFLEYKTVSFFALGAVVLAITGVEA---LYADMGHFGK--FPI-RLAWFTVVLPSLVLNYFGQGA 264 (622)
T ss_pred HHhHhC---HHHHHHHHHhCCCceEEEecceeeeccchHH---HhhccCCCCc--cce-eeeehhhHHHHHHHHhcchHH
Confidence 111110 0000111 1234556667777777654 4588877652 223 333333333222222233333
Q ss_pred hhhcCCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhh
Q 011580 301 YAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAH 356 (482)
Q Consensus 301 y~~fG~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~~ 356 (482)
|+.=. ++.+.+-|=..-|+|+..-.-++..+..+.+-.-.+...+....+.++
T Consensus 265 ~ll~~---p~~~~NpFf~~~P~~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~ 317 (622)
T PRK10745 265 LLLKN---PEAIKNPFFLLAPDWALIPLLILATLATVIASQAVISGVFSLTRQAVR 317 (622)
T ss_pred HHhcC---chhhcCcHHHhCChhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44322 222222111124566544333444444444444444444444444443
No 131
>PLN02351 cytochromes b561 family protein
Probab=24.46 E-value=5.8e+02 Score=23.76 Aligned_cols=74 Identities=12% Similarity=0.124 Sum_probs=51.1
Q ss_pred HhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhcc
Q 011580 265 QDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFC 344 (482)
Q Consensus 265 ~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~~ 344 (482)
++-++.+ |+.+|.+....-..+++..++|+.. .|-++ ++...|+- +...|+....-.++.++-+..+..+.
T Consensus 73 YR~~~~~----~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~--~~~i~nly-SLHSWlGl~tv~Lf~lQwv~Gf~~F~ 143 (242)
T PLN02351 73 HRWLPGS----RKTKKSVHLWLQGLALASGVFGIWT--KFHGQ--DGIVANFY-SLHSWMGLICVSLFGAQWLTGFMSFW 143 (242)
T ss_pred hhccccc----chHHHHHHHHHHHHHHHHHHHHHHH--HHhcc--cCCccchh-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445544 4568888888888888888888866 55433 22344442 35789998888888999888886655
Q ss_pred cch
Q 011580 345 QPL 347 (482)
Q Consensus 345 ~p~ 347 (482)
.|.
T Consensus 144 ~P~ 146 (242)
T PLN02351 144 HRG 146 (242)
T ss_pred cCC
Confidence 543
No 132
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=23.81 E-value=3.8e+02 Score=27.32 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=16.4
Q ss_pred HhccchHHHHHHhhhhhhhhhHhhhhH
Q 011580 401 MLLPFFNDVVGLLGALGFWPLTVYFPV 427 (482)
Q Consensus 401 ~~ip~~~~v~~l~Ga~~~~~l~~ilP~ 427 (482)
-.+|-++..--+.|-+++-++.+++=+
T Consensus 559 GliPWiDN~aHlfG~i~GLl~s~~~~P 585 (652)
T KOG2290|consen 559 GLIPWIDNWAHLFGTIFGLLTSIIFLP 585 (652)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhhc
Confidence 456666665566666666667776533
No 133
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=23.07 E-value=2.1e+02 Score=21.96 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=24.9
Q ss_pred HHhhhhhhhhhHhhhhHHHHHHHhCCCc--cchhHHHHH
Q 011580 411 GLLGALGFWPLTVYFPVEMYIAQKKIPK--WSTKWLCLQ 447 (482)
Q Consensus 411 ~l~Ga~~~~~l~~ilP~~~~l~~~~~~~--~~~~~~~~~ 447 (482)
++.+...+..++++.|+.--+|.-+.++ ...+|..-|
T Consensus 2 ~~~~~~l~~~i~~~yP~~~s~kal~~~~~~~~~~wL~YW 40 (94)
T PF03134_consen 2 GFIARLLCNLIGILYPAYKSFKALKSKDKKDLKQWLTYW 40 (94)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4667777889999999988888655433 233454444
No 134
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=22.24 E-value=9.4e+02 Score=25.41 Aligned_cols=257 Identities=13% Similarity=0.110 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhh--
Q 011580 69 IAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISM-- 146 (482)
Q Consensus 69 ~~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l-- 146 (482)
+.|++.++++.+.-..+.+-..-..+..+..+|. ....-++.++.. +..+..-.+...+-.+|.+.. .||.+
T Consensus 36 vlG~lSlIfWtL~liv~iKYv~ivlradn~GEGG-i~aL~sL~~~~~-~~~~~~~~~l~~l~l~G~al~----~gDgviT 109 (534)
T PF02705_consen 36 VLGVLSLIFWTLTLIVTIKYVLIVLRADNNGEGG-IFALYSLIRRFL-KSSKRRRWLLLILGLLGAALF----YGDGVIT 109 (534)
T ss_pred HHHHHHHHHHHHHHHHHHheEEEEEEeCCCCChh-HHHHHHHHHHhh-ccchhHHHHHHHHHHHHhhhh----hcceeec
Confidence 4577777777776666666555555544333332 233444444222 122222222445555666653 33332
Q ss_pred -----HHhhhhccccCCCCCCCCccCCCchhHHHHHHHHHh-h-cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011580 147 -----MAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVL-S-QIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAE 219 (482)
Q Consensus 147 -----~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl-~-~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~ 219 (482)
-.-.++... .....+... +-+...++..| . +.+..+++.. .++-++.+++..+. ...++.+.+
T Consensus 110 PAISVlSAvEGl~v------~~p~~~~~V-v~it~~ILv~LF~iQ~~GT~~ig~--~FgPim~~WF~~l~-~~G~~~I~~ 179 (534)
T PF02705_consen 110 PAISVLSAVEGLEV------ATPSLEPYV-VPITIAILVGLFAIQRFGTAKIGK--LFGPIMLLWFLTLG-VLGLYNIIQ 179 (534)
T ss_pred chHHHHHHhhhhhc------cCCCCccee-hhHHHHHHHHHHHHHhhhhhHHHH--HHhHHHHHHHHHHH-HHHHHHHhh
Confidence 111221110 000222112 22233333333 2 3334444444 47777777765543 455666655
Q ss_pred cCCCCCCccccccccccchhhH-----HHHHHHHHHHHHHhcccchhHhhHhhhCCCCccccchhhHHHHHHHHHHHHHH
Q 011580 220 TGKFRGSLTGISIGTVSETQKI-----WRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYM 294 (482)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~ 294 (482)
+ |. -....+ +....++ +..+..+|.++.+.+|-+.+. ++|-|=. |+--+..+..+...+++--
T Consensus 180 ~-p~--Vl~A~n---P~yai~f~~~~~~~~~~~LG~V~L~~TGaEALy---ADmGHfg---~~~Ir~aw~~~V~PaL~Ln 247 (534)
T PF02705_consen 180 H-PE--VLKALN---PYYAIRFFIRNGWIGFFVLGAVFLCVTGAEALY---ADMGHFG---RKPIRIAWFFLVFPALLLN 247 (534)
T ss_pred C-HH--HHHHhC---HHHHHHHHHHcCCchhhhcchHHHHHhhHHHHH---hhhcccc---chhhhhhHHHHHHHHHHHH
Confidence 4 21 001100 0011111 235677888888888887655 7887765 2222333333222222222
Q ss_pred HHHhHHhhhcCCCcccccccccccCCCchHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhh
Q 011580 295 LCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAH 356 (482)
Q Consensus 295 ~~g~~gy~~fG~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~~ 356 (482)
=+|-..|+.=..+...|..-. ..|+|+..-.-++..+..+.+-.-.+........+.+.
T Consensus 248 Y~GQgA~ll~~p~~~~npFf~---~~P~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~ 306 (534)
T PF02705_consen 248 YFGQGALLLSHPEAVSNPFFL---LIPEWLLWPMVILATLATIIASQAVISGAFSLTRQAIQ 306 (534)
T ss_pred HccHHHHHHcCcchhhhHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333433333222222222 23556544444444444444434444444444444433
No 135
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=21.65 E-value=5.8e+02 Score=26.25 Aligned_cols=47 Identities=21% Similarity=0.172 Sum_probs=40.9
Q ss_pred cHHHHHHhhhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhhh
Q 011580 106 TYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERS 152 (482)
Q Consensus 106 ~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~ 152 (482)
.+.+..++..++....++++......+++..+.+...++.+..+-..
T Consensus 275 p~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~d 321 (478)
T PF00324_consen 275 PFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMARD 321 (478)
T ss_pred chhhhhhhcccccccceecccchhhhhhhhhhhhcccceeehhhhhh
Confidence 56777888888899999999999999999999999999998877754
No 136
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=20.12 E-value=7.2e+02 Score=23.26 Aligned_cols=40 Identities=10% Similarity=0.177 Sum_probs=27.7
Q ss_pred HhhHhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 011580 262 IEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGD 306 (482)
Q Consensus 262 ~~i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~ 306 (482)
..-.+.+++| ++++.+.+...+..++|...-..+.-.+++
T Consensus 15 ~~g~~~l~~P-----~lr~~~liPl~inllLf~~~l~~~~~~~~~ 54 (251)
T PRK04949 15 IQGWKLILQP-----GLRRFVILPLLVNILLFGGAFWWLFTQLDA 54 (251)
T ss_pred HHHHHHhcCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777 588889999999888887775444444443
No 137
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=20.11 E-value=2.5e+02 Score=25.94 Aligned_cols=65 Identities=14% Similarity=0.258 Sum_probs=31.5
Q ss_pred HHHHHHHHHhccchHHHHHHh---------hhhhhhhhHhhhhHHHHHHHhCC-Cc-----cchhHHHHHHHHHHHHHHH
Q 011580 393 VILTTVISMLLPFFNDVVGLL---------GALGFWPLTVYFPVEMYIAQKKI-PK-----WSTKWLCLQILSVACLIIT 457 (482)
Q Consensus 393 ~~~~~~ia~~ip~~~~v~~l~---------Ga~~~~~l~~ilP~~~~l~~~~~-~~-----~~~~~~~~~~~~~~~~~~~ 457 (482)
.+.++++|..++.++-++.++ ||.++.-+.++= |..+-+. ++ ..-+| +-|+++++|+++.
T Consensus 163 F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~w-Lwwi~~vlG~ll~ 237 (262)
T KOG4812|consen 163 FMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYW-LWWIFLVLGLLLF 237 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchH-HHHHHHHHHHHHH
Confidence 334445555555444444333 777776666654 2222121 11 11123 3445566777776
Q ss_pred HHHHH
Q 011580 458 IAAAA 462 (482)
Q Consensus 458 v~g~~ 462 (482)
+-+++
T Consensus 238 lr~~i 242 (262)
T KOG4812|consen 238 LRGFI 242 (262)
T ss_pred HHHHH
Confidence 66654
Done!