Query 011580
Match_columns 482
No_of_seqs 136 out of 1469
Neff 9.4
Searched_HMMs 13730
Date Mon Mar 25 11:06:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011580.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011580hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 69.7 44 0.0032 31.0 30.9 107 39-151 6-117 (509)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 4.7 3.8E+02 0.027 22.5 5.1 51 41-91 380-432 (447)
3 d1q90b_ f.21.1.2 (B:) Cytochro 4.2 7.7E+02 0.056 19.0 7.0 51 249-306 88-138 (212)
4 d1v54l_ f.23.6.1 (L:) Mitochon 4.1 3.8E+02 0.028 15.2 3.6 30 315-344 9-38 (46)
5 d2e74f1 f.23.25.1 (F:1-32) Pet 3.9 3.1E+02 0.023 13.9 2.4 22 52-75 6-27 (32)
6 d1v54d_ f.23.1.1 (D:) Mitochon 3.8 3.3E+02 0.024 20.0 3.0 41 263-306 63-103 (144)
7 d3cx5c2 f.21.1.2 (C:1-261) Mit 3.2 1E+03 0.075 18.8 11.6 63 248-317 86-155 (261)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.1 1E+03 0.075 18.7 7.4 22 454-475 61-82 (248)
9 d2axtm1 f.23.35.1 (M:1-36) Pho 3.0 4.1E+02 0.03 14.2 2.1 16 419-434 11-26 (36)
10 d1q90r_ f.23.12.1 (R:) ISP sub 2.8 4.5E+02 0.033 14.4 2.2 20 412-431 17-36 (39)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=69.73 E-value=44 Score=31.04 Aligned_cols=107 Identities=15% Similarity=0.005 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhhhhhhhh-hHHHHHHHhhChh----hHHHHHHHHHHHHHHHHHHHHHchhcCCCCCCcccccHHHHHHh
Q 011580 39 TLWTASAHIITAVIGSGV-LSLAWATAQLGWI----AGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRS 113 (482)
Q Consensus 39 s~~~a~~~l~~~~iG~Gi-LslP~af~~~G~~----~gii~~~~~~~~~~~t~~~l~~~~~~~~~~~g~~~~~y~~l~~~ 113 (482)
|..+-++..++..+|-|= .=.||-..+-|-. +=+++++++++=-.+.=..+.+..++.. ...+..+...
T Consensus 6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~------i~~~~~i~~~ 79 (509)
T d2a65a1 6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQG------HGTTPAIFYL 79 (509)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTT------CCSHHHHHHH
T ss_pred ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc------ccHHHHHHHH
Confidence 567788899999999986 5599998665532 2223333333333332233333333211 2267776666
Q ss_pred hhcCcceeehHHHHHHHHHHHHHHHHHHhhhhhHHhhh
Q 011580 114 NLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIER 151 (482)
Q Consensus 114 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~i~~ 151 (482)
..+.+....+.+...+..+..++-|.+..+-.+..+..
T Consensus 80 ~~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~ 117 (509)
T d2a65a1 80 LWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIK 117 (509)
T ss_dssp HSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544334455555566666666677666665544443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.67 E-value=3.8e+02 Score=22.51 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=27.4
Q ss_pred HHHHHHHHhhhhhh--hhhHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHH
Q 011580 41 WTASAHIITAVIGS--GVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAA 91 (482)
Q Consensus 41 ~~a~~~l~~~~iG~--GiLslP~af~~~G~~~gii~~~~~~~~~~~t~~~l~~ 91 (482)
...+.+.+....|. |.+..++.....|+-.....+..+.+++......+..
T Consensus 380 ~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 380 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333 2233456667788876666666666655555554444
No 3
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.18 E-value=7.7e+02 Score=19.01 Aligned_cols=51 Identities=12% Similarity=0.215 Sum_probs=29.2
Q ss_pred HHHHHHhcccchhHhhHhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 011580 249 GDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGD 306 (482)
Q Consensus 249 ~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~ 306 (482)
+.+...-..|..=.-.++.-|+| | ...+.+-.+..++-+..|+.||..=.+
T Consensus 88 s~~~~~~~lHm~r~~~~gsyk~p----r---e~~W~~Gv~l~~l~m~~aftGY~Lpw~ 138 (212)
T d1q90b_ 88 SMMVLMMVLHVFRVYLTGGFKRP----R---ELTWVTGVIMAVCTVSFGVTGYSLPWD 138 (212)
T ss_dssp HHHHHHHHHHHHHHHTTTTTSSS----C---HHHHHHHHHHHHHHHHHHHHHHHTTCB
T ss_pred hHHHHHHHHHHHHHHHcCcccCc----c---cceehHhHHHHHHHHHHHHhhhhcchh
Confidence 33333333344444445666666 3 234555556667778899999985444
No 4
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.07 E-value=3.8e+02 Score=15.24 Aligned_cols=30 Identities=13% Similarity=-0.095 Sum_probs=18.5
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHhhhhcc
Q 011580 315 GFGFYNPYWLLDIANAAIVIHLVGAYQVFC 344 (482)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~s~pl~~ 344 (482)
|+|++..+-+...+...+.+..-.+.|.++
T Consensus 9 NLPFsv~Nk~rLla~m~~~fGsgfa~PF~i 38 (46)
T d1v54l_ 9 NIPFSVENKWRLLAMMTLFFGSGFAAPFFI 38 (46)
T ss_dssp SSSSCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchhHHHHHHHHHHHHhccccchHHH
Confidence 444444554566666777777777777654
No 5
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.86 E-value=3.1e+02 Score=13.87 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=10.9
Q ss_pred hhhhhhHHHHHHHhhChhhHHHHH
Q 011580 52 IGSGVLSLAWATAQLGWIAGPSVM 75 (482)
Q Consensus 52 iG~GiLslP~af~~~G~~~gii~~ 75 (482)
.-+.+|+....| .||..|.+++
T Consensus 6 l~aa~lsfglif--vgwglgalll 27 (32)
T d2e74f1 6 LYAALLSFGLIF--VGWGLGVLLL 27 (32)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHhhHHH--HHhHHHHHHh
Confidence 334455555555 3555555443
No 6
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.78 E-value=3.3e+02 Score=20.03 Aligned_cols=41 Identities=10% Similarity=-0.051 Sum_probs=20.5
Q ss_pred hhHhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 011580 263 EIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGD 306 (482)
Q Consensus 263 ~i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~ 306 (482)
+...||+.|+ ...+.++..++..+.+-.+++...-..+|+.
T Consensus 63 ~t~ae~~~p~---gewK~v~g~~~~~i~~s~~i~~~~r~~v~p~ 103 (144)
T d1v54d_ 63 ESFAEMNRST---NEWKTVVGAAMFFIGFTALLLIWEKHYVYGP 103 (144)
T ss_dssp SCHHHHTCCC---SHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cccccccCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4567888887 3455555444443333333333333334444
No 7
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.19 E-value=1e+03 Score=18.85 Aligned_cols=63 Identities=10% Similarity=0.030 Sum_probs=35.9
Q ss_pred HHHHHHHhcccchhHhhHhhhCCCCccccchhhHHHHHHHHHHHHHHHHHhHHhhhcCCC-------cccccccccc
Q 011580 248 LGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDL-------SPGNLLTGFG 317 (482)
Q Consensus 248 ~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~s~~~~~i~Y~~~g~~gy~~fG~~-------~~~~i~~~~~ 317 (482)
.+.+...-..|..=.-.++.-|+| | ...+.+-....++-+..|+.||..=.++ +-.|+....|
T Consensus 86 a~~~~~~~~lH~~r~~~~gsy~~p----r---e~~W~~Gv~l~~l~~~~af~GY~Lpw~q~s~w~~~Vit~l~~~iP 155 (261)
T d3cx5c2 86 ASFFFMVMFMHMAKGLYYGSYRSP----R---VTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIP 155 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTT----C---HHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHHHHGGGGST
T ss_pred HHHHHHHHHHHHHHHHHhccccCc----c---chhHHhhHHHHHHHHHHHHhhhhcCCCcchhhHHHHHHHHHHhcC
Confidence 333333334444444556666766 2 2345555566777788999999844433 4456665544
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.09 E-value=1e+03 Score=18.66 Aligned_cols=22 Identities=5% Similarity=0.073 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 011580 454 LIITIAAAAGSIAGVVTDLKSY 475 (482)
Q Consensus 454 ~~~~v~g~~~si~~ii~~~~~~ 475 (482)
+++.++-.+=.++++.-++.+|
T Consensus 61 ~~l~~Fvi~Pi~yT~~iaFTNy 82 (248)
T d2r6gf1 61 AGMGLFVLFPLVCTIAIAFTNY 82 (248)
T ss_dssp HHHHHHTHHHHHHHHHGGGBCC
T ss_pred HHHHHHHHHhheeEEEEEEEEc
Confidence 3444455666667777777665
No 9
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.04 E-value=4.1e+02 Score=14.17 Aligned_cols=16 Identities=25% Similarity=0.167 Sum_probs=8.8
Q ss_pred hhhHhhhhHHHHHHHh
Q 011580 419 WPLTVYFPVEMYIAQK 434 (482)
Q Consensus 419 ~~l~~ilP~~~~l~~~ 434 (482)
+.+..++|..|.+.++
T Consensus 11 t~LFilvPt~FLliLy 26 (36)
T d2axtm1 11 TALFVLVPSVFLIILY 26 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3444556777655543
No 10
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.78 E-value=4.5e+02 Score=14.43 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=0.0
Q ss_pred HhhhhhhhhhHhhhhHHHHH
Q 011580 412 LLGALGFWPLTVYFPVEMYI 431 (482)
Q Consensus 412 l~Ga~~~~~l~~ilP~~~~l 431 (482)
+.|++.........|...|+
T Consensus 17 l~G~~~~~~~g~l~py~~fF 36 (39)
T d1q90r_ 17 LAGGAGLPITTLALGYGAFF 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccchhhhhhccceeEEe
Done!