BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011581
(482 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 539 bits (1389), Expect = e-153, Method: Compositional matrix adjust.
Identities = 267/410 (65%), Positives = 310/410 (75%), Gaps = 7/410 (1%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXG-NSAPKKYDEIDAAPEERARG 133
A+G+F R KPHVN+GTIGHVDHGK N K Y +ID APEERARG
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARG 60
Query: 134 ITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI 193
ITINTA VEYET RHY+HVDCPGHADY+KNMITGAAQMDGAILVVS ADGPMPQT+EHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 194 LLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALE 253
LLA+QVGVP +VVF+NK + YEFPGD+VP+I GSALLALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 254 ALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATG 313
+ NP KRGEN+WVDKI+EL+D++D YIP P R D PFL+ VEDVF+ITGRGTVATG
Sbjct: 181 EMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 314 RVERGTIKVGETVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQR 372
R+ERG +KVG+ V++VGL ETR VTGVEM +KTL E +AGDNVGLLLRGV + +++R
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVER 300
Query: 373 GMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDK 432
G VLAKPG+ITPHTKF A VYVLKKEEGGRH+ FF+GYRPQFY RTTDVTG V
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVRL----- 355
Query: 433 DEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 482
+ +MVMPGD + VELI PVA E+G+RFAIREGG+TVGAGV+ I+E
Sbjct: 356 PQGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 538 bits (1387), Expect = e-153, Method: Compositional matrix adjust.
Identities = 266/410 (64%), Positives = 309/410 (75%), Gaps = 7/410 (1%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXG-NSAPKKYDEIDAAPEERARG 133
A+G+F R KPHVN+GTIGHVDHGK N K Y +ID APEERARG
Sbjct: 1 AKGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG 60
Query: 134 ITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI 193
ITINTA VEYET RHY+HVDCPGHADY+KNMITGAAQMDGAILVVS ADGPMPQT+EHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 194 LLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALE 253
LLA+QVGVP +VVF+NK + YEFPGD+VP+I GSALLALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 254 ALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATG 313
+ NP KRGEN+WVDKI+EL+D++D YIP P R D PFL+ VEDVF+ITGRGTVATG
Sbjct: 181 EMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 314 RVERGTIKVGETVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQR 372
R+ERG +KVG+ V++VGL ETR VTGVEM +KTL E +AGDNVGLLLRGV + +++R
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVER 300
Query: 373 GMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDK 432
G VLAKPG+ITPHTKF A VY+LKKEEGGRH+ FF GYRPQFY RTTDVTG V
Sbjct: 301 GQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRL----- 355
Query: 433 DEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 482
+ +MVMPGD + VELI PVA E+G+RFAIREGG+TVGAGV+ I+E
Sbjct: 356 PQGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 538 bits (1386), Expect = e-153, Method: Compositional matrix adjust.
Identities = 266/410 (64%), Positives = 309/410 (75%), Gaps = 7/410 (1%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXG-NSAPKKYDEIDAAPEERARG 133
A+G+F R KPHVN+GTIGHVDHGK N K Y +ID APEERARG
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG 60
Query: 134 ITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI 193
ITINTA VEYET RHY+HVDCPGHADY+KNMITGAAQMDGAILVVS ADGPMPQT+EHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 194 LLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALE 253
LLA+QVGVP +VVF+NK + YEFPGD+VP+I GSALLALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 254 ALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATG 313
+ NP KRGEN+WVDKI+EL+D++D YIP P R D PFL+ VEDVF+ITGRGTVATG
Sbjct: 181 EMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 314 RVERGTIKVGETVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQR 372
R+ERG +KVG+ V++VGL ETR VTGVEM +KTL E +AGDNVGLLLRGV + +++R
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVER 300
Query: 373 GMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDK 432
G VLAKPG+ITPHTKF A VY+LKKEEGGRH+ FF GYRPQFY RTTDVTG V
Sbjct: 301 GQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRL----- 355
Query: 433 DEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 482
+ +MVMPGD + VELI PVA E+G+RFAIREGG+TVGAGV+ I+E
Sbjct: 356 PQGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 536 bits (1380), Expect = e-152, Method: Compositional matrix adjust.
Identities = 265/410 (64%), Positives = 309/410 (75%), Gaps = 7/410 (1%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXG-NSAPKKYDEIDAAPEERARG 133
A+G+F R KPHVN+GTIGHVDHGK N K Y +ID APEERARG
Sbjct: 1 AKGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARG 60
Query: 134 ITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI 193
ITINTA VEYET RHY+HVDCPGHADY+KNMITGAAQMDGAILVVS ADGPMPQT+EHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 194 LLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALE 253
LLA+QVGVP +VVF+NK + YEFPGD+VP+I GSALLALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 254 ALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATG 313
+ NP +RGEN+WVDKI+EL+D++D YIP P R D PFL+ VEDVF+ITGRGTVATG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 314 RVERGTIKVGETVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQR 372
R+ERG +KVG+ V++VGL ETR VTGVEM +KTL E +AGDNVG+LLRGV + +++R
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 373 GMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDK 432
G VLAKPG+ITPHTKF A VYVLKKEEGGRH+ FF+GYRPQFY RTTDVTG V
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPG-- 358
Query: 433 DEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 482
+MVMPGD + VELI PVA E+G+RFAIREGG+TVGAGV+ I+E
Sbjct: 359 ---VEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 535 bits (1379), Expect = e-152, Method: Compositional matrix adjust.
Identities = 265/410 (64%), Positives = 309/410 (75%), Gaps = 7/410 (1%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXG-NSAPKKYDEIDAAPEERARG 133
A+G+F R KPHVN+GTIGHVDHGK N K Y +ID APEERARG
Sbjct: 2 AKGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG 61
Query: 134 ITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI 193
ITINTA VEYET RHY+HVDCPGHADY+KNMITGAAQMDGAILVVS ADGPMPQT+EHI
Sbjct: 62 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 121
Query: 194 LLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALE 253
LLA+QVGVP +VVF+NK + YEFPGD+VP+I GSALLALE
Sbjct: 122 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 181
Query: 254 ALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATG 313
+ NP +RGEN+WVDKI+EL+D++D YIP P R D PFL+ VEDVF+ITGRGTVATG
Sbjct: 182 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 241
Query: 314 RVERGTIKVGETVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQR 372
R+ERG +KVG+ V++VGL ETR VTGVEM +KTL E +AGDNVG+LLRGV + +++R
Sbjct: 242 RIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 301
Query: 373 GMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDK 432
G VLAKPG+ITPHTKF A VYVLKKEEGGRH+ FF+GYRPQFY RTTDVTG V
Sbjct: 302 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPG-- 359
Query: 433 DEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 482
+MVMPGD + VELI PVA E+G+RFAIREGG+TVGAGV+ I+E
Sbjct: 360 ---VEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 406
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 535 bits (1379), Expect = e-152, Method: Compositional matrix adjust.
Identities = 265/410 (64%), Positives = 309/410 (75%), Gaps = 7/410 (1%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXG-NSAPKKYDEIDAAPEERARG 133
A+G+F R KPHVN+GTIGHVDHGK N K Y +ID APEERARG
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARG 60
Query: 134 ITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI 193
ITINTA VEYET RHY+HVDCPGHADY+KNMITGAAQMDGAILVVS ADGPMPQT+EHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 194 LLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALE 253
LLA+QVGVP +VVF+NK + YEFPGD+VP+I GSALLALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 254 ALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATG 313
+ NP +RGEN+WVDKI+EL+D++D YIP P R D PFL+ VEDVF+ITGRGTVATG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 314 RVERGTIKVGETVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQR 372
R+ERG +KVG+ V++VGL ETR VTGVEM +KTL E +AGDNVG+LLRGV + +++R
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 373 GMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDK 432
G VLAKPG+ITPHTKF A VYVLKKEEGGRH+ FF+GYRPQFY RTTDVTG V
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPG-- 358
Query: 433 DEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 482
+MVMPGD + VELI PVA E+G+RFAIREGG+TVGAGV+ I+E
Sbjct: 359 ---VEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 535 bits (1379), Expect = e-152, Method: Compositional matrix adjust.
Identities = 265/410 (64%), Positives = 309/410 (75%), Gaps = 7/410 (1%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXG-NSAPKKYDEIDAAPEERARG 133
A+G+F R KPHVN+GTIGHVDHGK N K Y +ID APEERARG
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARG 60
Query: 134 ITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI 193
ITINTA VEYET RHY+HVDCPGHADY+KNMITGAAQMDGAILVVS ADGPMPQT+EHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 194 LLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALE 253
LLA+QVGVP +VVF+NK + YEFPGD+VP+I GSALLALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 254 ALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATG 313
+ NP +RGEN+WVDKI+EL+D++D YIP P R D PFL+ VEDVF+ITGRGTVATG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 314 RVERGTIKVGETVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQR 372
R+ERG +KVG+ V++VGL ETR VTGVEM +KTL E +AGDNVG+LLRGV + +++R
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 373 GMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDK 432
G VLAKPG+ITPHTKF A VYVLKKEEGGRH+ FF+GYRPQFY RTTDVTG V
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPG-- 358
Query: 433 DEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 482
+MVMPGD + VELI PVA E+G+RFAIREGG+TVGAGV+ I+E
Sbjct: 359 ---VEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 535 bits (1378), Expect = e-152, Method: Compositional matrix adjust.
Identities = 265/410 (64%), Positives = 309/410 (75%), Gaps = 7/410 (1%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXG-NSAPKKYDEIDAAPEERARG 133
A+G+F R KPHVN+GTIGHVDHGK N K Y +ID APEERARG
Sbjct: 1 AKGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG 60
Query: 134 ITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI 193
ITINTA VEYET RHY+HVDCPGHADY+KNMITGAAQMDGAILVVS ADGPMPQT+EHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 194 LLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALE 253
LLA+QVGVP +VVF+NK + YEFPGD+VP+I GSALLALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 254 ALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATG 313
+ NP +RGEN+WVDKI+EL+D++D YIP P R D PFL+ VEDVF+ITGRGTVATG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 314 RVERGTIKVGETVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQR 372
R+ERG +KVG+ V++VGL ETR VTGVEM +KTL E +AGDNVG+LLRGV + +++R
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 373 GMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDK 432
G VLAKPG+ITPHTKF A VYVLKKEEGGRH+ FF+GYRPQFY RTTDVTG V
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPG-- 358
Query: 433 DEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 482
+MVMPGD + VELI PVA E+G+RFAIREGG+TVGAGV+ I+E
Sbjct: 359 ---VEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 535 bits (1378), Expect = e-152, Method: Compositional matrix adjust.
Identities = 265/410 (64%), Positives = 309/410 (75%), Gaps = 7/410 (1%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXG-NSAPKKYDEIDAAPEERARG 133
A+G+F R KPHVN+GTIGHVDHGK N K Y +ID APEERARG
Sbjct: 1 AKGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG 60
Query: 134 ITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI 193
ITINTA VEYET RHY+HVDCPGHADY+KNMITGAAQMDGAILVVS ADGPMPQT+EHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 194 LLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALE 253
LLA+QVGVP +VVF+NK + YEFPGD+VP+I GSALLALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 254 ALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATG 313
+ NP +RGEN+WVDKI+EL+D++D YIP P R D PFL+ VEDVF+ITGRGTVATG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 314 RVERGTIKVGETVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQR 372
R+ERG +KVG+ V++VGL ETR VTGVEM +KTL E +AGDNVG+LLRGV + +++R
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 373 GMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDK 432
G VLAKPG+ITPHTKF A VYVLKKEEGGRH+ FF+GYRPQFY RTTDVTG V
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPG-- 358
Query: 433 DEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 482
+MVMPGD + VELI PVA E+G+RFAIREGG+TVGAGV+ I+E
Sbjct: 359 ---VEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 535 bits (1377), Expect = e-152, Method: Compositional matrix adjust.
Identities = 265/410 (64%), Positives = 309/410 (75%), Gaps = 7/410 (1%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXG-NSAPKKYDEIDAAPEERARG 133
A+G+F R KPHVN+GTIGHVDHGK N K Y +ID APEERARG
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG 60
Query: 134 ITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI 193
ITINTA VEYET RHY+HVDCPGHADY+KNMITGAAQMDGAILVVS ADGPMPQT+EHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 194 LLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALE 253
LLA+QVGVP +VVF+NK + YEFPGD+VP+I GSALLALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 254 ALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATG 313
+ NP +RGEN+WVDKI+EL+D++D YIP P R D PFL+ VEDVF+ITGRGTVATG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 314 RVERGTIKVGETVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQR 372
R+ERG +KVG+ V++VGL ETR VTGVEM +KTL E +AGDNVG+LLRGV + +++R
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 373 GMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDK 432
G VLAKPG+ITPHTKF A VYVLKKEEGGRH+ FF+GYRPQFY RTTDVTG V
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPG-- 358
Query: 433 DEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 482
+MVMPGD + VELI PVA E+G+RFAIREGG+TVGAGV+ I+E
Sbjct: 359 ---VEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 510 bits (1313), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/407 (61%), Positives = 297/407 (72%), Gaps = 15/407 (3%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGI 134
++ KFER KPHVN+GTIGHVDHGK A + +D+ID APEE+ARGI
Sbjct: 286 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI 345
Query: 135 TINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 194
TINT+ VEY+T RHYAHVDCPGHADYVKNMITGAAQMDGAILVV+ DGPMPQT+EHIL
Sbjct: 346 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 405
Query: 195 LAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEA 254
L +QVGVP ++VFLNK S Y+FPGDD PI+ GSAL ALE
Sbjct: 406 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE- 464
Query: 255 LMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGR 314
G+ +W KI EL +DSYIP P+R D PFLL +EDVFSI+GRGTV TGR
Sbjct: 465 ---------GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGR 515
Query: 315 VERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGM 374
VERG IKVGE V++VG+KET+ T TGVEMF+K LDE AG+NVG+LLRG+++ +I+RG
Sbjct: 516 VERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQ 575
Query: 375 VLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE 434
VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG + + E
Sbjct: 576 VLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPE 630
Query: 435 ESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 481
+MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+ ++
Sbjct: 631 GVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 677
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 510 bits (1313), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/407 (61%), Positives = 297/407 (72%), Gaps = 15/407 (3%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGI 134
++ KFER KPHVN+GTIGHVDHGK A + +D+ID APEE+ARGI
Sbjct: 286 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI 345
Query: 135 TINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 194
TINT+ VEY+T RHYAHVDCPGHADYVKNMITGAAQMDGAILVV+ DGPMPQT+EHIL
Sbjct: 346 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 405
Query: 195 LAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEA 254
L +QVGVP ++VFLNK S Y+FPGDD PI+ GSAL ALE
Sbjct: 406 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE- 464
Query: 255 LMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGR 314
G+ +W KI EL +DSYIP P+R D PFLL +EDVFSI+GRGTV TGR
Sbjct: 465 ---------GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGR 515
Query: 315 VERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGM 374
VERG IKVGE V++VG+KET+ T TGVEMF+K LDE AG+NVG+LLRG+++ +I+RG
Sbjct: 516 VERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQ 575
Query: 375 VLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE 434
VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG + + E
Sbjct: 576 VLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPE 630
Query: 435 ESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 481
+MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+ ++
Sbjct: 631 GVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 677
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 506 bits (1303), Expect = e-143, Method: Compositional matrix adjust.
Identities = 250/407 (61%), Positives = 297/407 (72%), Gaps = 15/407 (3%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGI 134
A+ KFER KPHVN+GTIGHVDHGK A + +D+ID APEE+ARGI
Sbjct: 1 AKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI 60
Query: 135 TINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 194
TINT+ VEY+T RHYAHVDCPGHADYVKNMITGAAQMDGAILVV+ DGPMPQT+EHIL
Sbjct: 61 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 120
Query: 195 LAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEA 254
L +QVGVP ++VFLNK S Y+FPGDD PI+ GSAL ALE
Sbjct: 121 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE- 179
Query: 255 LMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGR 314
G+ +W KI EL +DSYIP P+R D PFLL +EDVFSI+GRGTV TGR
Sbjct: 180 ---------GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGR 230
Query: 315 VERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGM 374
VERG IKVGE V++VG+KET+ T TGVEMF+K LDE AG+NVG+LLRG+++ +I+RG
Sbjct: 231 VERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQ 290
Query: 375 VLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE 434
VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG + + E
Sbjct: 291 VLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPE 345
Query: 435 ESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 481
+MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+ ++
Sbjct: 346 GVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 392
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 506 bits (1302), Expect = e-143, Method: Compositional matrix adjust.
Identities = 250/407 (61%), Positives = 297/407 (72%), Gaps = 15/407 (3%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGI 134
A+ KFER KPHVN+GTIGHVDHGK A + +D+ID APEE+ARGI
Sbjct: 2 AKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI 61
Query: 135 TINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 194
TINT+ VEY+T RHYAHVDCPGHADYVKNMITGAAQMDGAILVV+ DGPMPQT+EHIL
Sbjct: 62 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 121
Query: 195 LAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEA 254
L +QVGVP ++VFLNK S Y+FPGDD PI+ GSAL ALE
Sbjct: 122 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE- 180
Query: 255 LMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGR 314
G+ +W KI EL +DSYIP P+R D PFLL +EDVFSI+GRGTV TGR
Sbjct: 181 ---------GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGR 231
Query: 315 VERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGM 374
VERG IKVGE V++VG+KET+ T TGVEMF+K LDE AG+NVG+LLRG+++ +I+RG
Sbjct: 232 VERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQ 291
Query: 375 VLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE 434
VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG + + E
Sbjct: 292 VLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPE 346
Query: 435 ESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 481
+MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+ ++
Sbjct: 347 GVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 505 bits (1300), Expect = e-143, Method: Compositional matrix adjust.
Identities = 249/407 (61%), Positives = 297/407 (72%), Gaps = 15/407 (3%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGI 134
++ KFER KPHVN+GTIGHVDHGK A + +D+ID APEE+ARGI
Sbjct: 1 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI 60
Query: 135 TINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 194
TINT+ VEY+T RHYAHVDCPGHADYVKNMITGAAQMDGAILVV+ DGPMPQT+EHIL
Sbjct: 61 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 120
Query: 195 LAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEA 254
L +QVGVP ++VFLNK S Y+FPGDD PI+ GSAL ALE
Sbjct: 121 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE- 179
Query: 255 LMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGR 314
G+ +W KI EL +DSYIP P+R D PFLL +EDVFSI+GRGTV TGR
Sbjct: 180 ---------GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGR 230
Query: 315 VERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGM 374
VERG IKVGE V++VG+KET+ T TGVEMF+K LDE AG+NVG+LLRG+++ +I+RG
Sbjct: 231 VERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQ 290
Query: 375 VLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE 434
VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG + + E
Sbjct: 291 VLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPE 345
Query: 435 ESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 481
+MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+ ++
Sbjct: 346 GVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 392
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 504 bits (1299), Expect = e-143, Method: Compositional matrix adjust.
Identities = 249/407 (61%), Positives = 297/407 (72%), Gaps = 15/407 (3%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGI 134
++ KFER KPHVN+GTIGHVDHGK A + +D+ID APEE+ARGI
Sbjct: 2 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI 61
Query: 135 TINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 194
TINT+ VEY+T RHYAHVDCPGHADYVKNMITGAAQMDGAILVV+ DGPMPQT+EHIL
Sbjct: 62 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 121
Query: 195 LAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEA 254
L +QVGVP ++VFLNK S Y+FPGDD PI+ GSAL ALE
Sbjct: 122 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE- 180
Query: 255 LMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGR 314
G+ +W KI EL +DSYIP P+R D PFLL +EDVFSI+GRGTV TGR
Sbjct: 181 ---------GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGR 231
Query: 315 VERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGM 374
VERG IKVGE V++VG+KET+ T TGVEMF+K LDE AG+NVG+LLRG+++ +I+RG
Sbjct: 232 VERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQ 291
Query: 375 VLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE 434
VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG + + E
Sbjct: 292 VLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPE 346
Query: 435 ESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 481
+MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+ ++
Sbjct: 347 GVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 504 bits (1299), Expect = e-143, Method: Compositional matrix adjust.
Identities = 249/407 (61%), Positives = 297/407 (72%), Gaps = 15/407 (3%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGI 134
++ KFER KPHVN+GTIGHVDHGK A + +D+ID APEE+ARGI
Sbjct: 1 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI 60
Query: 135 TINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 194
TINT+ VEY+T RHYAHVDCPGHADYVKNMITGAAQMDGAILVV+ DGPMPQT+EHIL
Sbjct: 61 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 120
Query: 195 LAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEA 254
L +QVGVP ++VFLNK S Y+FPGDD PI+ GSAL ALE
Sbjct: 121 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE- 179
Query: 255 LMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGR 314
G+ +W KI EL +DSYIP P+R D PFLL +EDVFSI+GRGTV TGR
Sbjct: 180 ---------GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGR 230
Query: 315 VERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGM 374
VERG IKVGE V++VG+KET+ T TGVEMF+K LDE AG+NVG+LLRG+++ +I+RG
Sbjct: 231 VERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQ 290
Query: 375 VLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE 434
VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG + + E
Sbjct: 291 VLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPE 345
Query: 435 ESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 481
+MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+ ++
Sbjct: 346 GVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 392
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 497 bits (1279), Expect = e-141, Method: Compositional matrix adjust.
Identities = 249/410 (60%), Positives = 293/410 (71%), Gaps = 7/410 (1%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXG-NSAPKKYDEIDAAPEERARG 133
A+G+F R K HVN+GTIGHVDHGK N K Y +ID A EERARG
Sbjct: 1 AKGEFIRTKRHVNVGTIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDIDKAREERARG 60
Query: 134 ITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI 193
ITINTA VEYET RHY+HVDC GHADY+KNMITGAAQMDGAILVVS ADG M QT+EHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHI 120
Query: 194 LLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALE 253
LLA+QVGV +VVF+NK + YEF GD+V +I GSALLALE
Sbjct: 121 LLARQVGVRYIVVFMNKVDMVDDRELLDLVEMEVRDLLNQYEFRGDEVRVIRGSALLALE 180
Query: 254 ALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATG 313
+ N KRGEN+WVDKI+EL+D++D YI R D FL+ VEDVF+ITGRGTVATG
Sbjct: 181 EMHKNRKTKRGENEWVDKIWELLDAIDEYIRTRVRDVDKRFLMRVEDVFTITGRGTVATG 240
Query: 314 RVERGTIKVGETVDLVGL-KETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQR 372
R+ERG +KVG+ V++VGL +ETR VTGVEM +KTL E +AGDNVGLLLRGV + +++R
Sbjct: 241 RIERGKVKVGDEVEIVGLARETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVER 300
Query: 373 GMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDK 432
G VLAK G+IT HTKF A VY+LKKEEGGRH+ FF GYR QFY RTTDVTG V
Sbjct: 301 GQVLAKRGSITRHTKFEASVYILKKEEGGRHTGFFTGYRRQFYFRTTDVTGVVRL----- 355
Query: 433 DEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 482
+ +MVM GD + VELI VA E+G+RFAIREGG+TVGAGV+ I+E
Sbjct: 356 RQGVEMVMRGDNVTFTVELIKRVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 496 bits (1276), Expect = e-140, Method: Compositional matrix adjust.
Identities = 245/399 (61%), Positives = 291/399 (72%), Gaps = 15/399 (3%)
Query: 83 KPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGITINTATVE 142
KPHVN+GTIGHVDHGK A + +D+ID APEE+ARGITINT+ VE
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVE 60
Query: 143 YETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVP 202
Y+T RHYAHVDCPGHADYVKNMITGAAQMDGAILVV+ DGPMPQT+EHILL +QVGVP
Sbjct: 61 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 120
Query: 203 NMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIK 262
++VFLNK S Y+FPGDD PI+ GSAL ALE
Sbjct: 121 YIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE--------- 171
Query: 263 RGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKV 322
G+ +W KI EL +DSYIP P+R D PFLL +EDVFSI+GRGTV TGRVERG IKV
Sbjct: 172 -GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKV 230
Query: 323 GETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTI 382
GE V++VG+KET+ T TGVEMF+K LDE AG+NVG+LLRG+++ +I+RG VLAKPGTI
Sbjct: 231 GEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTI 290
Query: 383 TPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPG 442
PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG + + E +MVMPG
Sbjct: 291 KPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPG 345
Query: 443 DRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 481
D IKMVV LI P+A + G+RFAIREGG+TVGAGV+ ++
Sbjct: 346 DNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 384
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 478 bits (1231), Expect = e-135, Method: Compositional matrix adjust.
Identities = 242/407 (59%), Positives = 286/407 (70%), Gaps = 29/407 (7%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGI 134
++ KFER KPHVN+GTIGHVDHGK A ARGI
Sbjct: 1 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGA--------------ARGI 46
Query: 135 TINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 194
TINT+ VEY+T RHYAHVDCPGHADYVKNMITGAAQMDGAILVV+ DGPMPQT+EHIL
Sbjct: 47 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 106
Query: 195 LAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEA 254
L +QVGVP ++VFLNK S Y+FPGDD PI+ GSAL ALE
Sbjct: 107 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE- 165
Query: 255 LMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGR 314
G+ +W KI EL +DSYIP P+R D PFLL +EDVFSI+GRGTV TGR
Sbjct: 166 ---------GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGR 216
Query: 315 VERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGM 374
VERG IKVGE V++VG+KET+ T TGVEMF+K LDE AG+NVG+LLRG+++ +I+RG
Sbjct: 217 VERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQ 276
Query: 375 VLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE 434
VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG + + E
Sbjct: 277 VLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPE 331
Query: 435 ESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 481
+MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+ ++
Sbjct: 332 GVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 378
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 443 bits (1140), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/349 (63%), Positives = 261/349 (74%), Gaps = 15/349 (4%)
Query: 133 GITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEH 192
GITINT+ VEY+T RHYAHVDCPGHADYVKNMITGAAQMDGAILVV+ DGPMPQT+EH
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 193 ILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLAL 252
ILL +QVGVP ++VFLNK S Y+FPGDD PI+ GSAL AL
Sbjct: 61 ILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKAL 120
Query: 253 EALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVAT 312
E G+ +W KI EL +DSYIP P+R D PFLL +EDVFSI+GRGTV T
Sbjct: 121 E----------GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVT 170
Query: 313 GRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQR 372
GRVERG IKVGE V++VG+KET+ T TGVEMF+K LDE AG+NVG+LLRG+++ +I+R
Sbjct: 171 GRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIER 230
Query: 373 GMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDK 432
G VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG + +
Sbjct: 231 GQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----EL 285
Query: 433 DEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 481
E +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+ ++
Sbjct: 286 PEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 334
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/349 (62%), Positives = 260/349 (74%), Gaps = 15/349 (4%)
Query: 133 GITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEH 192
GITINT+ VEY+T RHYAHVD PGHADYVKNMITGAAQMDGAILVV+ DGPMPQT+EH
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 193 ILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLAL 252
ILL +QVGVP ++VFLNK S Y+FPGDD PI+ GSAL AL
Sbjct: 61 ILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKAL 120
Query: 253 EALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVAT 312
E G+ +W KI EL +DSYIP P+R D PFLL +EDVFSI+GRGTV T
Sbjct: 121 E----------GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVT 170
Query: 313 GRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQR 372
GRVERG IKVGE V++VG+KET+ T TGVEMF+K LDE AG+NVG+LLRG+++ +I+R
Sbjct: 171 GRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIER 230
Query: 373 GMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDK 432
G VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG + +
Sbjct: 231 GQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----EL 285
Query: 433 DEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 481
E +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+ ++
Sbjct: 286 PEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 334
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 387 bits (995), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/395 (48%), Positives = 258/395 (65%), Gaps = 13/395 (3%)
Query: 83 KPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGITINTATVE 142
KPHVN+GTIGHVDHGK G + KKY+EID APEERARGITIN A VE
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE 60
Query: 143 YETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVP 202
Y T RHYAH DCPGHADYVKNMITG A +DG ILVV+ DGPMPQT+EH+LLA+Q+GV
Sbjct: 61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVE 120
Query: 203 NMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIK 262
++VV++NK + + + G++ PII GSAL ALE +
Sbjct: 121 HVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALE--------Q 172
Query: 263 RGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKV 322
R + + +L+D+VD+YIP+P R + PFLL VE V+SI GRGTV TG +ERG +K
Sbjct: 173 RDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKK 232
Query: 323 GETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTI 382
G+ + +G + VTG+EMF K+LD A AGDN+G L+RG+++ D++RG+V+AKPG+I
Sbjct: 233 GDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSI 292
Query: 383 TPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPG 442
PH K A VY+L KEEGGRH PF + + P + T D+ R+ I+ E + MPG
Sbjct: 293 QPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRI--ILPPGKE---LAMPG 347
Query: 443 DRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVI 477
+ +K+ + L P+ E+G RF +R+G +T+G G++
Sbjct: 348 EDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLV 382
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 379 bits (972), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/403 (47%), Positives = 256/403 (63%), Gaps = 13/403 (3%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGI 134
A+ + R KPHVN+GTIGHVDHGK G + KKY+EID APEERARGI
Sbjct: 4 AKKTYVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGI 63
Query: 135 TINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 194
TIN A VEY T RHYAH DCPGHADYVKN ITG A +DG ILVV+ DGP PQT+EH+L
Sbjct: 64 TINAAHVEYSTAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLL 123
Query: 195 LAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEA 254
LA+Q+GV ++VV++NK + + + G++ PII GSAL ALE
Sbjct: 124 LARQIGVEHVVVYVNKADAVQDSEXVELVELEIRELLTEFGYKGEETPIIVGSALCALE- 182
Query: 255 LMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGR 314
+R + + +L+D+VD+YIP+P R + PFLL VE V+SI GRGTV TG
Sbjct: 183 -------QRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGT 235
Query: 315 VERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGM 374
+ERG +K G+ + +G + VTG+E F K+LD A AGDN+G L+RG+++ D++RG+
Sbjct: 236 LERGILKKGDECEFLGHSKNIRTVVTGIEXFHKSLDRAEAGDNLGALVRGLKREDLRRGL 295
Query: 375 VLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE 434
V AKPG+I PH K A VY+L KEEGGRH PF + + P + T D R+ I+ E
Sbjct: 296 VXAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSHFXPVXFSLTWDXACRI--ILPPGKE 353
Query: 435 ESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVI 477
+ PG+ +K+ + L P E+G RF +R+G +T+G G++
Sbjct: 354 ---LAXPGEDLKLTLILRQPXILEKGQRFTLRDGNRTIGTGLV 393
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 139/445 (31%), Positives = 210/445 (47%), Gaps = 66/445 (14%)
Query: 82 KKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDE---------------IDAA 126
+KPH+N+ IGHVDHGK K+ +E +D
Sbjct: 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRL 62
Query: 127 PEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM 186
EER RG+TIN + +ET+ + +D PGH D+VKNMITGA+Q D AILVVS G
Sbjct: 63 KEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEY 122
Query: 187 P-------QTKEHILLAKQVGVPNMVVFLNKXXXXX---XXXXXXXXXXXXXXXXSSYEF 236
QT+EHI+LAK +G+ ++V +NK SY F
Sbjct: 123 EAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGF 182
Query: 237 PGDD---VPIISGSALLALEALMANPSIKRGENQWVD--KIYELMDSVDSYIPIPQRQTD 291
+ VP+++ S N + K +W + + E +D ++ +P + D
Sbjct: 183 NTNKVRFVPVVAPSG--------DNITHKSENMKWYNGPTLEEYLDQLE----LPPKPVD 230
Query: 292 LPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDE 351
P + ++DV+SI+G GTV GRVE G +KVG+ + V + + V +E +D+
Sbjct: 231 KPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKI--VFMPAGKVGEVRSIETHHTKMDK 288
Query: 352 AMAGDNVGLLLRGVQKADIQRGMVLAKPGT-ITPHTKFLAIVYVLKKEEGGRHSPFFA-G 409
A GDN+G +RGV+K DI+RG V+ P T +F A + V+ H A G
Sbjct: 289 AEPGDNIGFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVV------WHPTALANG 342
Query: 410 YRPQFYMRTTDVTGRVSSIMNDKDEES--------KMVMPGDRIKMVVELIMPVACEQGM 461
Y P ++ T V RVS +++ D + + + GD + + I P+ E+
Sbjct: 343 YTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYN 402
Query: 462 ------RFAIREGGKTVGAGVIQSI 480
RFA+R+ GKTVG G+I +
Sbjct: 403 EFPPLGRFAMRDMGKTVGVGIIVDV 427
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 140/441 (31%), Positives = 209/441 (47%), Gaps = 58/441 (13%)
Query: 82 KKPHVNIGTIGHVDHGKXXXX---------------XXXXXXXXXXGNSAPKKYDEIDAA 126
+KPH+N+ IGHVDHGK G + K +D
Sbjct: 6 EKPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKM 65
Query: 127 PEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM 186
EER RGITI+ +++ET+ + +D PGH D+VKNMITGA+Q D AILVVS G
Sbjct: 66 KEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEF 125
Query: 187 P-------QTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPG- 238
QT+EH+LLA+ +G+ ++V +NK + G
Sbjct: 126 EAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGY 185
Query: 239 --DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLL 296
D +P I SA + +P++ W + L++++D P P + D P +
Sbjct: 186 QVDKIPFIPVSAWKGDNLIERSPNMP-----WYNG-PTLVEALDQLQP-PAKPVDKPLRI 238
Query: 297 AVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGD 356
V++V+SI G GTV GRVE G ++VG+ V V + V +EM + L +A GD
Sbjct: 239 PVQNVYSIPGAGTVPVGRVETGVLRVGDKV--VFMPPGVVGEVRSIEMHYQQLQQAEPGD 296
Query: 357 NVGLLLRGVQKADIQRGMV---LAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQ 413
N+G +RGV K+DI+RG V L KP T+ +F A ++V+ S GY P
Sbjct: 297 NIGFAVRGVSKSDIKRGDVAGHLDKPPTVA--EEFEARIFVI-----WHPSAITVGYTPV 349
Query: 414 FYMRTTDVTGRVSSIMNDKDEESKMVM--------PGD----RIKMVVELIMPVACE--Q 459
++ T V+ R+ I D ++ V+ GD R K V L++ E Q
Sbjct: 350 IHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQ 409
Query: 460 GMRFAIREGGKTVGAGVIQSI 480
RFA+R+ +TVG G++ +
Sbjct: 410 LGRFAMRDMNRTVGIGIVTDV 430
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 140/441 (31%), Positives = 209/441 (47%), Gaps = 58/441 (13%)
Query: 82 KKPHVNIGTIGHVDHGKXXXX---------------XXXXXXXXXXGNSAPKKYDEIDAA 126
+KPH+N+ IGHVDHGK G + K +D
Sbjct: 3 EKPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKM 62
Query: 127 PEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM 186
EER RGITI+ +++ET+ + +D PGH D+VKNMITGA+Q D AILVVS G
Sbjct: 63 KEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEF 122
Query: 187 P-------QTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPG- 238
QT+EH+LLA+ +G+ ++V +NK + G
Sbjct: 123 EAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGY 182
Query: 239 --DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLL 296
D +P I SA + +P++ W + L++++D P P + D P +
Sbjct: 183 QVDKIPFIPVSAWKGDNLIERSPNMP-----WYNG-PTLVEALDQLQP-PAKPVDKPLRI 235
Query: 297 AVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGD 356
V++V+SI G GTV GRVE G ++VG+ V V + V +EM + L +A GD
Sbjct: 236 PVQNVYSIPGAGTVPVGRVETGVLRVGDKV--VFMPPGVVGEVRSIEMHYQQLQQAEPGD 293
Query: 357 NVGLLLRGVQKADIQRGMV---LAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQ 413
N+G +RGV K+DI+RG V L KP T+ +F A ++V+ S GY P
Sbjct: 294 NIGFAVRGVSKSDIKRGDVAGHLDKPPTVA--EEFEARIFVI-----WHPSAITVGYTPV 346
Query: 414 FYMRTTDVTGRVSSIMNDKDEESKMVM--------PGD----RIKMVVELIMPVACE--Q 459
++ T V+ R+ I D ++ V+ GD R K V L++ E Q
Sbjct: 347 IHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQ 406
Query: 460 GMRFAIREGGKTVGAGVIQSI 480
RFA+R+ +TVG G++ +
Sbjct: 407 LGRFAMRDMNRTVGIGIVTDV 427
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 136/445 (30%), Positives = 191/445 (42%), Gaps = 53/445 (11%)
Query: 81 RKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDE---------------IDA 125
++K H+N+ IGHVD GK +K+++ +D
Sbjct: 3 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDK 62
Query: 126 APEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGP 185
ER RGITI+ A ++ET +D PGH D++KNMITG +Q D AIL+++G G
Sbjct: 63 LKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE 122
Query: 186 MP-------QTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXX-XXXXXXXXXXXSSYEFP 237
QT+EH LLA +GV ++V +NK +
Sbjct: 123 FEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYN 182
Query: 238 GDDVPIISGSALLA---LEALMANPSIKRGENQ---WVDKIYELMDSVDSYIPIPQRQTD 291
VP + S +EA P K E + V K L++++D+ I P R TD
Sbjct: 183 PKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSRPTD 241
Query: 292 LPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDE 351
P L ++DV+ I G GTV GRVE G IK G V T V VEM + L++
Sbjct: 242 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTE--VKSVEMHHEQLEQ 299
Query: 352 AMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPH--TKFLAIVYVLKKEEGGRHSPFFAG 409
+ GDNVG ++ V +I+RG V P F A V VL G+ S AG
Sbjct: 300 GVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHP--GQIS---AG 354
Query: 410 YRPQFYMRTTDVTGRVSSIMNDKDEES--------KMVMPGDR--IKMVVELIMPVACEQ 459
Y P T + R ++ D S K + GD +K V M V
Sbjct: 355 YSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFS 414
Query: 460 GM----RFAIREGGKTVGAGVIQSI 480
RFA+R+ +TV GVI+S+
Sbjct: 415 EYPPLGRFAVRDMRQTVAVGVIKSV 439
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 136/304 (44%), Gaps = 35/304 (11%)
Query: 83 KPH-----VNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGITIN 137
+PH +N+G GH+DHGK + D PE + RGITI+
Sbjct: 12 RPHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAH---------DKLPESQKRGITID 62
Query: 138 TATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAK 197
++ EN VD PGHAD ++ +++ A +D A++VV +GP QT EH+L+
Sbjct: 63 IGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILD 122
Query: 198 QVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMA 257
+P ++V + K S++ + IS ++ L
Sbjct: 123 HFNIP-IIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDEL-K 180
Query: 258 NPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVER 317
N I N E++ + +SY +P ++ F I G GTV TG + +
Sbjct: 181 NLIITTLNNA------EIIRNTESYFKMP-----------LDHAFPIKGAGTVVTGTINK 223
Query: 318 GTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLA 377
G +KVG+ + ++ + + V ++ F++++ EA AGD VG+ ++GV I RG +L
Sbjct: 224 GIVKVGDELKVLPINMSTK--VRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILT 281
Query: 378 KPGT 381
T
Sbjct: 282 SKDT 285
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 109/441 (24%), Positives = 179/441 (40%), Gaps = 55/441 (12%)
Query: 82 KKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDE---------------IDAA 126
KK HVN+ IGHVD GK +KY+ +D
Sbjct: 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTN 73
Query: 127 PEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM 186
EER +G T+ +ETE +H+ +D PGH +V NMI GA+Q D A+LV+S G
Sbjct: 74 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 133
Query: 187 P-------QTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYE---- 235
QT+EH +LAK GV +++V +NK +
Sbjct: 134 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGF 193
Query: 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFL 295
P D+ + S L AN + W + + +D+ +P R D P
Sbjct: 194 NPKKDIHFMPCSGLTG-----ANLKEQSDFCPWYIGL-PFIPYLDN-LPNFNRSVDGPIR 246
Query: 296 LAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAG 355
L + D + GTV G++E G+I G+ LV + N V G+ D G
Sbjct: 247 LPIVDKYK--DMGTVVLGKLESGSIFKGQ--QLVMMPNKHNVEVLGILSDDTETDFVAPG 302
Query: 356 DNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFY 415
+N+ + L+G+++ +I G +L P + + + V+ + + S GY +
Sbjct: 303 ENLKIRLKGIEEEEILPGFILCDPSNLCHSGRTFDVQIVIIEHK----SIICPGYNAVLH 358
Query: 416 MRTT----DVTGRVSSIMNDKDEESKM---VMPGDRIKMVVELIMPVAC-------EQGM 461
+ T ++T +S + E+SK + D++ + C Q
Sbjct: 359 IHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMG 418
Query: 462 RFAIREGGKTVGAGVIQSIIE 482
RF +R+ GKT+ G + +++
Sbjct: 419 RFTLRDEGKTIAIGKVLKLVQ 439
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 112/445 (25%), Positives = 189/445 (42%), Gaps = 63/445 (14%)
Query: 83 KPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDE---------------IDAAP 127
K HVNI IGHVD GK +K + +D+
Sbjct: 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 100
Query: 128 EERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP 187
EER +G T+ +ETE+R ++ +D PGH YV NMI GA+Q D +LV+S G
Sbjct: 101 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 160
Query: 188 -------QTKEHILLAKQVGVPNMVVFLNK------XXXXXXXXXXXXXXXXXXXXXSSY 234
QT+EH +LA+ G+ ++VV +NK + Y
Sbjct: 161 AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY 220
Query: 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYE---LMDSVDSYIPIPQRQTD 291
DV + SA ++K + V Y+ L++ +DS + +R+ +
Sbjct: 221 N-SKTDVKYMPVSAY-------TGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHL-ERKVN 271
Query: 292 LPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDE 351
PF++ + + GT+ G++E G+IK V ++ + +T T E ++ +
Sbjct: 272 APFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEE-ISS 328
Query: 352 AMAGDNVGLLLRGVQKADIQRGMVL-AKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGY 410
++ GD V L +RG +D+Q G VL + + T+F+A + +L+ S GY
Sbjct: 329 SICGDQVRLRVRG-DDSDVQTGYVLTSTKNPVHATTRFIAQIAILELP-----SILTTGY 382
Query: 411 RPQFYMRTTDVTGRVSSIMNDKDEESK-------MVMPGDRIKMVVELIMPVACE----- 458
++ T + +++ D+ ++ G +I +E PV E
Sbjct: 383 SCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDY 442
Query: 459 QGM-RFAIREGGKTVGAGVIQSIIE 482
Q M RF +R+ G TV G + I++
Sbjct: 443 QYMGRFTLRDQGTTVAVGKVVKILD 467
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 100/429 (23%), Positives = 175/429 (40%), Gaps = 43/429 (10%)
Query: 83 KPHVNIGTIGHVDHGKXX------------XXXXXXXXXXXXGNSAPKKYDE---IDAAP 127
KP V++ GHVD GK NS + +D
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 128 EERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP 187
EERARG+T++ A+ +E++ + Y D PGH D++ MI GA+ D A+LVV +
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFE 294
Query: 188 -------QTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXX--XXSSYEFPG 238
QT+EH L + +G+ +VV +NK F
Sbjct: 295 RGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKT 354
Query: 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAV 298
+V + SA+ + + S +W K L+ ++D +P P++ P L++
Sbjct: 355 SNVHFVPISAISGTNLIQKDSS---DLYKWY-KGPTLLSALDQLVP-PEKPYRKPLRLSI 409
Query: 299 EDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNV 358
+DV+ + R TGRVE G ++V + + V +E + + + A+AGD V
Sbjct: 410 DDVYR-SPRSVTVTGRVEAGNVQVNQVLYDVSSQEDA-YVKNVIRNSDPSSTWAVAGDTV 467
Query: 359 GLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRT 418
L L ++ ++ G +L+ + +V + + H P +G ++
Sbjct: 468 TLQLADIEVNQLRPGDILSNYENPVRRVR----SFVAEIQTFDIHGPILSGSTLVLHLGR 523
Query: 419 TDVTGRVSSIMNDKDEESKMVMPGDRIKMVVE-------LIMPVACEQGMRFAIREGGKT 471
T VT I+ ++ S+ + R + + L + C RF +R G T
Sbjct: 524 T-VTSVSLKIVTVNNKRSRHIASRKRALVRISFLDGLFPLCLAEECPALGRFILRRSGDT 582
Query: 472 VGAGVIQSI 480
V AG+++ +
Sbjct: 583 VAAGIVKEL 591
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 108/465 (23%), Positives = 182/465 (39%), Gaps = 85/465 (18%)
Query: 84 PHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDE---------------IDAAPE 128
PH++ +GHVD GK S +K +D E
Sbjct: 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNE 91
Query: 129 ERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP- 187
ER RG+T++ T + T ++ VD PGH D+V N I G +Q D AIL V +
Sbjct: 92 ERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFES 151
Query: 188 ------QTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXX----XXXXSSYEFP 237
QTKEH+LLA +G+ N+++ +NK +E
Sbjct: 152 GFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDN 211
Query: 238 GDDVPI--ISGSALLALE---------------ALMANPSIK-RGENQWVDKIYELMDSV 279
+ VPI SG + +E + + N + K EN+ ++K + SV
Sbjct: 212 INWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSV 271
Query: 280 DSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETR--NF 337
IP + DL + +G++E G+I+ GE++ + +++ +
Sbjct: 272 LEIIPSKKTSNDL----------------ALVSGKLESGSIQPGESLTIYPSEQSCIVDK 315
Query: 338 TVTGVEMFQKT----LDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVY 393
G + Q T D A+ GD V L LR DIQ G + A + H+ A +
Sbjct: 316 IQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHS---AQCF 372
Query: 394 VLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE-----ESKMVMPGDRIKMV 448
VL+ + P G ++ + R+ +++ D+ + K+ G + +
Sbjct: 373 VLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAF 432
Query: 449 VE-----------LIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 482
VE L+ ++ R +R+ G+T+ AG I I +
Sbjct: 433 VEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 477
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 108/465 (23%), Positives = 182/465 (39%), Gaps = 85/465 (18%)
Query: 84 PHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDE---------------IDAAPE 128
PH++ +GHVD GK S +K +D E
Sbjct: 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNE 225
Query: 129 ERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP- 187
ER RG+T++ T + T ++ VD PGH D+V N I G +Q D AIL V +
Sbjct: 226 ERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFES 285
Query: 188 ------QTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXX----XXXXSSYEFP 237
QTKEH+LLA +G+ N+++ +NK +E
Sbjct: 286 GFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDN 345
Query: 238 GDDVPI--ISGSALLALE---------------ALMANPSIK-RGENQWVDKIYELMDSV 279
+ VPI SG + +E + + N + K EN+ ++K + SV
Sbjct: 346 INWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSV 405
Query: 280 DSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETR--NF 337
IP + DL + +G++E G+I+ GE++ + +++ +
Sbjct: 406 LEIIPSKKTSNDL----------------ALVSGKLESGSIQPGESLTIYPSEQSCIVDK 449
Query: 338 TVTGVEMFQKT----LDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVY 393
G + Q T D A+ GD V L LR DIQ G + A + H+ A +
Sbjct: 450 IQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHS---AQCF 506
Query: 394 VLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE-----ESKMVMPGDRIKMV 448
VL+ + P G ++ + R+ +++ D+ + K+ G + +
Sbjct: 507 VLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAF 566
Query: 449 VE-----------LIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 482
VE L+ ++ R +R+ G+T+ AG I I +
Sbjct: 567 VEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 611
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 110/465 (23%), Positives = 181/465 (38%), Gaps = 85/465 (18%)
Query: 84 PHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDE---------------IDAAPE 128
PH++ +GHVD GK S +K D E
Sbjct: 32 PHLSFVVLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNE 91
Query: 129 ERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP- 187
ER RG+T++ T + T ++ VD PGH D+V N I G +Q D AIL V +
Sbjct: 92 ERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDCSTNAFES 151
Query: 188 ------QTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXX----XXXXSSYEFP 237
QTKEH LLA +G+ N+++ NK +E
Sbjct: 152 GFDLDGQTKEHXLLASSLGIHNLIIAXNKXDNVDWSQQRFEEIKSKLLPYLVDIGFFEDN 211
Query: 238 GDDVPI--ISGSALLALE---------------ALMANPSIK-RGENQWVDKIYELMDSV 279
+ VPI SG + +E + + N + K EN+ ++K + SV
Sbjct: 212 INWVPISGFSGEGVYKIEYTDEVRQWYNGPNLXSTLENAAFKISKENEGINKDDPFLFSV 271
Query: 280 DSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETR--NF 337
IP + DL + +G++E G+I+ GE++ + +++ +
Sbjct: 272 LEIIPSKKTSNDL----------------ALVSGKLESGSIQPGESLTIYPSEQSCIVDK 315
Query: 338 TVTGVEMFQKT----LDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVY 393
G + Q T D A+ GD V L LR DIQ G + A + H+ A +
Sbjct: 316 IQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHS---AQCF 372
Query: 394 VLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE-----ESKMVMPGDRIKMV 448
VL+ + P G ++ + R+ +++ D+ + K+ G + +
Sbjct: 373 VLELTTFDXNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAF 432
Query: 449 VE-----------LIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 482
VE L+ ++ R +R+ G+T+ AG I I +
Sbjct: 433 VEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 477
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 112/457 (24%), Positives = 184/457 (40%), Gaps = 102/457 (22%)
Query: 78 KFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGITIN 137
K + ++ VNIG +GHVDHGK D EE RGITI
Sbjct: 4 KRKTRQAEVNIGMVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIK 50
Query: 138 TATVE----------------------YETEN-RHYAHVDCPGHADYVKNMITGAAQMDG 174
+ +ETE R + +D PGH + M+ GA+ MDG
Sbjct: 51 IGFADAEIRRCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDG 110
Query: 175 AILVVSGAD-GPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSS 233
AILV++ + P PQT+EH++ + +G N+++ NK +
Sbjct: 111 AILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIKGT 170
Query: 234 YEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLP 293
++ PII SAL G N I L+ +++ +IP P+R ++ P
Sbjct: 171 V---AENAPIIPISAL-------------HGAN-----IDVLVKAIEEFIPTPKRDSNKP 209
Query: 294 FLLAVEDVFSITGRGT--------VATGRVERGTIKVGETVDL---VGLKETRNFT---- 338
+ V F + GT V G + +G +KVG+ +++ V +E
Sbjct: 210 PKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPI 269
Query: 339 ---VTGVEMFQKTLDEAMAGDNVGL---LLRGVQKADIQRGMVLAKPGTITP-HTKFLAI 391
+ ++ + ++EA G VG+ L + K D+ G V+ KPG + P T
Sbjct: 270 TTEIVSLQAGGQFVEEAYPGGLVGIGTKLDPYLTKGDLMAGNVVGKPGKLPPVWTDLRLE 329
Query: 392 VYVLKKEEGGRH----SPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKM 447
V++L++ G P + T G V+++ D+ E
Sbjct: 330 VHLLERVVGTEQELNVEPIKRKEVLLLNVGTARTMGLVTALGKDEIE------------- 376
Query: 448 VVELIMPVACEQGMRFAI-REGG---KTVGAGVIQSI 480
++L +PV E G R AI R+ G + +G G+I+ +
Sbjct: 377 -LKLQIPVCAEPGERVAISRQIGSRWRLIGYGIIKEL 412
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 113/456 (24%), Positives = 184/456 (40%), Gaps = 102/456 (22%)
Query: 78 KFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGITIN 137
K + ++ VNIG +GHVDHGK D EE RGITI
Sbjct: 3 KRKSRQAEVNIGMVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIK 49
Query: 138 TATVE----------------------YETEN-RHYAHVDCPGHADYVKNMITGAAQMDG 174
+ +ETE R + +D PGH + M+ GA+ MDG
Sbjct: 50 IGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDG 109
Query: 175 AILVVSGAD-GPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSS 233
AILV++ + P PQT+EH++ + +G N+++ NK +
Sbjct: 110 AILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGT 169
Query: 234 YEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLP 293
++ PII SAL G N I L+ +++ +IP P+R + P
Sbjct: 170 V---AENAPIIPISAL-------------HGAN-----IDVLVKAIEDFIPTPKRDPNKP 208
Query: 294 FLLAVEDVFSITGRGT--------VATGRVERGTIKVGETVDL---VGLKETRNFT---- 338
+ V F + GT V G + +G +KVG+ +++ V +E
Sbjct: 209 PKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPI 268
Query: 339 ---VTGVEMFQKTLDEAMAGDNVGL---LLRGVQKADIQRGMVLAKPGTITPHTKFLAI- 391
+ ++ + ++EA G VG+ L + K D+ G V+ KPG + P L +
Sbjct: 269 TTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLE 328
Query: 392 VYVLKK----EEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKM 447
V++L++ E+ + P + T G V+ + D+ E
Sbjct: 329 VHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGLVTGLGKDEIE------------- 375
Query: 448 VVELIMPVACEQGMRFAI-REGG---KTVGAGVIQS 479
V+L +PV E G R AI R+ G + +G G+I+
Sbjct: 376 -VKLQIPVCAEPGDRVAISRQIGSRWRLIGYGIIKE 410
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 113/456 (24%), Positives = 184/456 (40%), Gaps = 102/456 (22%)
Query: 78 KFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGITIN 137
K + ++ VNIG +GHVDHGK D EE RGITI
Sbjct: 3 KRKSRQAEVNIGMVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIK 49
Query: 138 TATVE----------------------YETEN-RHYAHVDCPGHADYVKNMITGAAQMDG 174
+ +ETE R + +D PGH + M+ GA+ MDG
Sbjct: 50 IGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDG 109
Query: 175 AILVVSGAD-GPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSS 233
AILV++ + P PQT+EH++ + +G N+++ NK +
Sbjct: 110 AILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGT 169
Query: 234 YEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLP 293
++ PII SAL G N I L+ +++ +IP P+R + P
Sbjct: 170 V---AENAPIIPISAL-------------HGAN-----IDVLVKAIEDFIPTPKRDPNKP 208
Query: 294 FLLAVEDVFSITGRGT--------VATGRVERGTIKVGETVDL---VGLKETRNFT---- 338
+ V F + GT V G + +G +KVG+ +++ V +E
Sbjct: 209 PKMLVLRSFDVNKPGTPPEKLVGGVLGGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPI 268
Query: 339 ---VTGVEMFQKTLDEAMAGDNVGL---LLRGVQKADIQRGMVLAKPGTITPHTKFLAI- 391
+ ++ + ++EA G VG+ L + K D+ G V+ KPG + P L +
Sbjct: 269 TTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLE 328
Query: 392 VYVLKK----EEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKM 447
V++L++ E+ + P + T G V+ + D+ E
Sbjct: 329 VHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGLVTGLGKDEIE------------- 375
Query: 448 VVELIMPVACEQGMRFAI-REGG---KTVGAGVIQS 479
V+L +PV E G R AI R+ G + +G G+I+
Sbjct: 376 -VKLQIPVCAEPGDRVAISRQIGSRWRLIGYGIIKE 410
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 120/295 (40%), Gaps = 48/295 (16%)
Query: 79 FERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGITINT 138
+ + +P VNIG +GHVDHGK + K+ I E G+ +
Sbjct: 3 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESC 62
Query: 139 ATVE-YETEN--------------RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD 183
E Y TE R + +D PGH + M++GAA MDGAILVV+ +
Sbjct: 63 KKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 122
Query: 184 G-PMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVP 242
P PQT+EH + +GV N+++ NK ++ ++VP
Sbjct: 123 PFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW---AENVP 179
Query: 243 IISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQ-TDLPFLLAVEDV 301
II SAL + I L++ ++ YI P R + P +L +
Sbjct: 180 IIPVSALHKI------------------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRS- 220
Query: 302 FSITGRGT--------VATGRVERGTIKVGETVDLV-GLKETRNFTVTGVEMFQK 347
F + GT V G + +G KV + + ++ GL+ + V+ +F K
Sbjct: 221 FDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTK 275
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 120/295 (40%), Gaps = 48/295 (16%)
Query: 79 FERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGITINT 138
+ + +P VNIG +GHVDHGK + K+ I E G+ +
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESC 61
Query: 139 ATVE-YETEN--------------RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD 183
E Y TE R + +D PGH + M++GAA MDGAILVV+ +
Sbjct: 62 KKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 121
Query: 184 G-PMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVP 242
P PQT+EH + +GV N+++ NK ++ ++VP
Sbjct: 122 PFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW---AENVP 178
Query: 243 IISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQ-TDLPFLLAVEDV 301
II SAL + I L++ ++ YI P R + P +L +
Sbjct: 179 IIPVSALHKI------------------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRS- 219
Query: 302 FSITGRGT--------VATGRVERGTIKVGETVDLV-GLKETRNFTVTGVEMFQK 347
F + GT V G + +G KV + + ++ GL+ + V+ +F K
Sbjct: 220 FDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTK 274
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 111/456 (24%), Positives = 179/456 (39%), Gaps = 102/456 (22%)
Query: 78 KFERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGITIN 137
K + ++ VNIG +GHVDHGK D EE RGITI
Sbjct: 3 KRKSRQAEVNIGXVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIK 49
Query: 138 TATVE----------------------YETEN-RHYAHVDCPGHADYVKNMITGAAQMDG 174
+ +ETE R + +D PGH + GA+ DG
Sbjct: 50 IGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDG 109
Query: 175 AILVVSGAD-GPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSS 233
AILV++ + P PQT+EH+ + +G N+++ NK +
Sbjct: 110 AILVIAANEPCPRPQTREHLXALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGT 169
Query: 234 YEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLP 293
++ PII SAL G N I L+ +++ +IP P+R + P
Sbjct: 170 V---AENAPIIPISAL-------------HGAN-----IDVLVKAIEDFIPTPKRDPNKP 208
Query: 294 FLLAVEDVFSITGRGT--------VATGRVERGTIKVGETVDL---VGLKETRNFT---- 338
V F + GT V G + +G +KVG+ +++ V +E
Sbjct: 209 PKXLVLRSFDVNKPGTPPEKLVGGVLGGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPI 268
Query: 339 ---VTGVEMFQKTLDEAMAGDNVGL---LLRGVQKADIQRGMVLAKPGTITPHTKFLAI- 391
+ ++ + ++EA G VG+ L + K D+ G V+ KPG + P L +
Sbjct: 269 TTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLXAGNVVGKPGKLPPVWDSLRLE 328
Query: 392 VYVLKK----EEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKM 447
V++L++ E+ + P + T G V+ + D+ E
Sbjct: 329 VHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTXGLVTGLGKDEIE------------- 375
Query: 448 VVELIMPVACEQGMRFAI-REGG---KTVGAGVIQS 479
V+L +PV E G R AI R+ G + +G G+I+
Sbjct: 376 -VKLQIPVCAEPGDRVAISRQIGSRWRLIGYGIIKE 410
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 109/453 (24%), Positives = 169/453 (37%), Gaps = 112/453 (24%)
Query: 85 HVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGITINTATVEYE 144
VNIG +GHVDHGK D EE RGI+I + E
Sbjct: 8 EVNIGMVGHVDHGKTSLTKALTGVWT-------------DRHSEELRRGISIRLGYADCE 54
Query: 145 TEN-----------------------RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSG 181
R + VD PGH + M++GA+ MDGAILV++
Sbjct: 55 IRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAA 114
Query: 182 AD-GPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDD 240
+ P PQTKEH++ + +G+ +++ NK + ++
Sbjct: 115 NEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTI---AEN 171
Query: 241 VPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVED 300
PII SA I L+ ++ +IP P+R D + V
Sbjct: 172 APIIPISA------------------HHEANIDVLLKAIQDFIPTPKRDPDATPRMYVAR 213
Query: 301 VFSITGRGT--------VATGRVERGTIKVGETVDLV-GLKETRNFTVTGVEMFQKTLDE 351
F I GT V G + +G KVG+ +++ G+K T G + F K L
Sbjct: 214 SFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTE-----GNKTFWKPLTT 268
Query: 352 AM----AGDNV-------GLLLRG------VQKADIQRGMVLAKPGTITPHTKFLAIV-- 392
+ AG+ + GL+ G + K+D G V+ PGT+ P + + I
Sbjct: 269 KIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRAN 328
Query: 393 ---YVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVV 449
V+ +E + P G + T G ++S D + +
Sbjct: 329 LLDRVVGTKEELKIEPLRTGEVLMLNIGTATTAGVITSARGDIAD--------------I 374
Query: 450 ELIMPVACEQGMRFAI--REGG--KTVGAGVIQ 478
+L +P+ E G R AI R G + +G G I+
Sbjct: 375 KLKLPICAEIGDRVAISRRVGSRWRLIGYGTIE 407
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 121/290 (41%), Gaps = 49/290 (16%)
Query: 79 FERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKK--YDEIDAA-------PEE 129
+ + +P VNIG +GHVDHGK G KK Y E + PE
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAIT------GIWTSKKLGYAETNIGVCESCKKPEA 55
Query: 130 RARGITINTATVEYETEN-RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG-PMP 187
+ + + E + R + +D PGH + M++GAA MDGAILVV+ + P P
Sbjct: 56 YVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP 115
Query: 188 QTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGS 247
QT+EH + +GV N+++ NK ++ ++VPII S
Sbjct: 116 QTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW---AENVPIIPVS 172
Query: 248 ALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQ-TDLPFLLAVEDVFSITG 306
AL + I L++ ++ YI P R + P +L + F +
Sbjct: 173 ALHKI------------------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRS-FDVNK 213
Query: 307 RGT--------VATGRVERGTIKVGETVDLV-GLKETRNFTVTGVEMFQK 347
GT V G + +G KV + + ++ GL+ + V+ +F K
Sbjct: 214 PGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTK 263
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 120/290 (41%), Gaps = 43/290 (14%)
Query: 79 FERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKK--YDEIDAA-------PEE 129
+ + +P VNIG +GHVDHGK + K Y E + PE
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGVCESCKKPEA 61
Query: 130 RARGITINTATVEYETEN-RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG-PMP 187
+ + + E + R + +D PGH + M++GAA MDGAILVV+ + P P
Sbjct: 62 YVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP 121
Query: 188 QTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGS 247
QT+EH + +GV N+++ NK ++ ++VPII S
Sbjct: 122 QTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW---AENVPIIPVS 178
Query: 248 ALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQ-TDLPFLLAVEDVFSITG 306
AL + I L++ ++ YI P R + P +L + F +
Sbjct: 179 ALHKI------------------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRS-FDVNK 219
Query: 307 RGT--------VATGRVERGTIKVGETVDLV-GLKETRNFTVTGVEMFQK 347
GT V G + +G KV + + ++ GL+ + V+ +F K
Sbjct: 220 PGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTK 269
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 143/348 (41%), Gaps = 33/348 (9%)
Query: 123 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 182
+D ER +GITI+ A + T R + D PGH Y +N TGA+ D AI++V
Sbjct: 79 VDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDAR 138
Query: 183 DGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVP 242
G QT+ H +A +G+ ++VV +NK +F
Sbjct: 139 YGVQTQTRRHSYIASLLGIKHIVVAINK-----XDLNGFDERVFESIKADYLKFAEGIAF 193
Query: 243 IISGSALLALEALMANPSIKRGENQ-WV--DKIYELMDSVDSYIPIPQRQTDLPFLLAVE 299
+ A + AL + + + E W + E++++V+ I + TDL F +
Sbjct: 194 KPTTXAFVPXSALKGDNVVNKSERSPWYAGQSLXEILETVE--IASDRNYTDLRFPVQYV 251
Query: 300 DVFSITGR---GTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGD 356
+ ++ R GT+A+G V +G ++V L ++ V + F+ L++A G
Sbjct: 252 NRPNLNFRGFAGTLASGIVHKGD-------EIVVLPSGKSSRVKSIVTFEGELEQAGPGQ 304
Query: 357 NVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYM 416
V L + DI RG +L + + V EE P G +
Sbjct: 305 AVTLTXE--DEIDISRGDLLVHADNVPQVSDAFDAXLVWXAEE-----PXLPGKKYDIKR 357
Query: 417 RTTDVTGRVSSIMNDKDEESKMVMPGDRIKM------VVELIMPVACE 458
T+ V G ++SI + D + P +++ V L P+A +
Sbjct: 358 ATSYVPGSIASITHRVDVNTLEEGPASSLQLNEIGRVKVSLDAPIALD 405
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 3/127 (2%)
Query: 86 VNIGTIGHVDHGKXXXXXXXXXXXXXXGN--SAPKKYDEIDAAPEERARGITINTATVEY 143
+NIG + HVD GK S K D ER RGITI T +
Sbjct: 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 62
Query: 144 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPN 203
+ EN +D PGH D++ + + +DGAIL++S DG QT+ +++G+P
Sbjct: 63 QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPT 122
Query: 204 MVVFLNK 210
+ F+NK
Sbjct: 123 -IFFINK 128
>pdb|2ELF|A Chain A, Crystal Structure Of The Selb-Like Elongation Factor
Ef-Pyl From Methanosarcina Mazei
Length = 370
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 121/291 (41%), Gaps = 32/291 (10%)
Query: 132 RGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKE 191
+G + + + E R+ VD + +K++IT D A+L + G T E
Sbjct: 44 KGTSSDITXYNNDKEGRNXVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGE 102
Query: 192 HILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVP-----IISG 246
I+ +G + ++ L + S++ D++ I SG
Sbjct: 103 CIIALDLLGFKHGIIALTRSD-------------------STHXHAIDELKAKLKVITSG 143
Query: 247 SALLALEALMANPSIKRGENQW--VDKIYELMDSVDSYIPIPQRQTD-LPFLLAVEDVFS 303
+ L E + N + K +N + VD++ ++ V I + + LP + ++ F+
Sbjct: 144 TVLQDWECISLNTN-KSAKNPFEGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFN 202
Query: 304 ITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLR 363
+TG+G V G V++G K + + L R+ + ++ +D A AG VG L+
Sbjct: 203 VTGKGCVVLGVVKQGISKDKDKTKIFPLD--RDIEIRSIQSHDVDIDSAPAGTRVGXRLK 260
Query: 364 GVQKADIQRGMVLA-KPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQ 413
VQ DI+RG +++ K T +T + KK E F G + +
Sbjct: 261 NVQAKDIERGFIISDKEIVTTDYTLECTVSKFTKKIEPASVLHLFVGLQSE 311
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 119/298 (39%), Gaps = 43/298 (14%)
Query: 87 NIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGITINTATVE--YE 144
N I HVDHGK K+ +D ER RGIT+ V Y+
Sbjct: 8 NFCIIAHVDHGKSTLADRLLEYTGAISERE-KREQLLDTLDVERERGITVKXQAVRXFYK 66
Query: 145 TE--NRHYAH-VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGV 201
+ N + H +D PGH D+ + A +GA+L++ + G QT + A + +
Sbjct: 67 AKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDL 126
Query: 202 PNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGS--ALLAL---EALM 256
++ +NK + P DV + +L L EA++
Sbjct: 127 -VIIPVINKI-----------------------DLPSADVDRVKKQIEEVLGLDPEEAIL 162
Query: 257 ANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVE 316
A S K G I E+++++ + IP P+ P + D + RG VA R+
Sbjct: 163 A--SAKEGIG-----IEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIF 215
Query: 317 RGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKA-DIQRG 373
G +K G+ + L + T G + + T + ++ +VG + ++ DI+ G
Sbjct: 216 DGEVKPGDKIXLXSTGKEYEVTEVGAQTPKXTKFDKLSAGDVGYIAASIKDVRDIRIG 273
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 120/298 (40%), Gaps = 43/298 (14%)
Query: 87 NIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGITINTATVE--YE 144
N I HVDHGK K+ +D ER RGIT+ V Y+
Sbjct: 8 NFCIIAHVDHGKSTLADRLLEYTGAISERE-KREQLLDTLDVERERGITVKMQAVRMFYK 66
Query: 145 TE--NRHYAH-VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGV 201
+ N + H +D PGH D+ + A +GA+L++ + G QT + A + +
Sbjct: 67 AKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDL 126
Query: 202 PNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGS--ALLAL---EALM 256
++ +NK + P DV + +L L EA++
Sbjct: 127 -VIIPVINKI-----------------------DLPSADVDRVKKQIEEVLGLDPEEAIL 162
Query: 257 ANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVE 316
A S K G I E+++++ + IP P+ P + D + RG VA R+
Sbjct: 163 A--SAKEGIG-----IEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIF 215
Query: 317 RGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKA-DIQRG 373
G +K G+ + L+ + T G + + T + ++ +VG + ++ DI+ G
Sbjct: 216 DGEVKPGDKIMLMSTGKEYEVTEVGAQTPKMTKFDKLSAGDVGYIAASIKDVRDIRIG 273
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 46/114 (40%), Gaps = 18/114 (15%)
Query: 80 ERKKPHVNIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGITINTA 139
E + P V I +GHVDHGK G A GIT +
Sbjct: 1 EPRAPVVTI--MGHVDHGKTSLLEYIRSTKVASGE----------------AGGITQHIG 42
Query: 140 TVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI 193
ETEN +D PGHA + GA D +LVV+ DG MPQT E I
Sbjct: 43 AYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI 96
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 20/138 (14%)
Query: 87 NIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEI-------DAAPEERARGITINTA 139
NIG HVD GK K E+ D +E+ RGITI +A
Sbjct: 15 NIGICAHVDAGKTTTTERVLFY-----TGVNHKLGEVHDGAATTDWMVQEQERGITITSA 69
Query: 140 TVEY-------ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEH 192
V + +N +D PGH D+ + +DGA++V G G PQ++
Sbjct: 70 AVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV 129
Query: 193 ILLAKQVGVPNMVVFLNK 210
A + GVP +V++NK
Sbjct: 130 WRQANKYGVPR-IVYVNK 146
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 88 IGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGITINTATVEYETEN 147
+ +GHVDHGK ++ ++ E+ A GIT + + +
Sbjct: 11 VTIMGHVDHGKTTLLDAI-------------RHSKV---TEQEAGGITQHIGAYQVTVND 54
Query: 148 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVF 207
+ +D PGH + GA D ILVV+ DG MPQT E I AK VP ++V
Sbjct: 55 KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVA 113
Query: 208 LNK 210
+NK
Sbjct: 114 INK 116
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 3/126 (2%)
Query: 87 NIGTIGHVDHGKXXXXXXXXXXXXXXGNSAP--KKYDEIDAAPEERARGITINTATVEYE 144
NIG H+D GK A + +D +ER RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 145 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNM 204
++ +D PGH D+ + +DGAI+V + G PQ++ A++ VP
Sbjct: 74 WKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR- 132
Query: 205 VVFLNK 210
+ F NK
Sbjct: 133 IAFANK 138
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 11/131 (8%)
Query: 87 NIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDE--IDAAPEERARGITI--NTATVE 142
N I H+DHGK G + ++ + +D+ ER RGITI + T++
Sbjct: 6 NFSIIAHIDHGKSTLSDRIIQIC---GGLSDREMEAQVLDSMDLERERGITIKAQSVTLD 62
Query: 143 YET---ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV 199
Y+ E +D PGH D+ + A +GA+LVV G QT + A ++
Sbjct: 63 YKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM 122
Query: 200 GVPNMVVFLNK 210
+ +V LNK
Sbjct: 123 DL-EVVPVLNK 132
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 11/131 (8%)
Query: 87 NIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDE--IDAAPEERARGITI--NTATVE 142
N I H+DHGK G + ++ + +D+ ER RGITI + T++
Sbjct: 6 NFSIIAHIDHGKSTLSDRIIQIC---GGLSDREMEAQVLDSMDLERERGITIKAQSVTLD 62
Query: 143 YET---ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV 199
Y+ E +D PGH D+ + A +GA+LVV G QT + A ++
Sbjct: 63 YKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM 122
Query: 200 GVPNMVVFLNK 210
+ +V LNK
Sbjct: 123 DL-EVVPVLNK 132
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 3/126 (2%)
Query: 87 NIGTIGHVDHGKXXXXXXXXXXXXXXGN--SAPKKYDEIDAAPEERARGITINTATVEYE 144
NIG H+D GK + +D +ER RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 145 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNM 204
++ +D PGH D+ + +DGAI+V + G PQ++ A++ VP
Sbjct: 74 WKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR- 132
Query: 205 VVFLNK 210
+ F NK
Sbjct: 133 IAFANK 138
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 3/126 (2%)
Query: 87 NIGTIGHVDHGKXXXXXXXXXXXXXXGN--SAPKKYDEIDAAPEERARGITINTATVEYE 144
NIG H+D GK + +D +ER RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 145 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNM 204
++ +D PGH D+ + +DGAI+V + G PQ++ A++ VP
Sbjct: 74 WKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR- 132
Query: 205 VVFLNK 210
+ F NK
Sbjct: 133 IAFANK 138
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 3/126 (2%)
Query: 87 NIGTIGHVDHGKXXXXXXXXXXXXXXGN--SAPKKYDEIDAAPEERARGITINTATVEYE 144
NIG H+D GK + +D +ER RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 145 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNM 204
++ +D PGH D+ + +DGAI+V + G PQ++ A++ VP
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR- 132
Query: 205 VVFLNK 210
+ F NK
Sbjct: 133 IAFANK 138
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 3/126 (2%)
Query: 87 NIGTIGHVDHGKXXXXXXXXXXXXXXGN--SAPKKYDEIDAAPEERARGITINTATVEYE 144
NIG H+D GK + +D +ER RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 145 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNM 204
++ +D PGH D+ + +DGAI+V + G PQ++ A++ VP
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR- 132
Query: 205 VVFLNK 210
+ F NK
Sbjct: 133 IAFANK 138
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 3/126 (2%)
Query: 87 NIGTIGHVDHGKXXXXXXXXXXXXXXGN--SAPKKYDEIDAAPEERARGITINTATVEYE 144
NIG H+D GK + +D +ER RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 145 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNM 204
++ +D PGH D+ + +DGAI+V + G PQ++ A++ VP
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR- 132
Query: 205 VVFLNK 210
+ F NK
Sbjct: 133 IAFANK 138
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 3/126 (2%)
Query: 87 NIGTIGHVDHGKXXXXXXXXXXXXXXGN--SAPKKYDEIDAAPEERARGITINTATVEYE 144
NIG H+D GK + +D +ER RGITI A
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 145 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNM 204
++ +D PGH D+ + +DGAI+V + G PQ++ A++ VP
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR- 132
Query: 205 VVFLNK 210
+ F NK
Sbjct: 133 IAFANK 138
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 123 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 182
+D +ER RGITI A ++ +D PGH D+ + +DGAI+V +
Sbjct: 52 MDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSS 111
Query: 183 DGPMPQTKEHILLAKQVGVPNMVVFLNK 210
G PQ++ A++ VP + F NK
Sbjct: 112 QGVEPQSETVWRQAEKYKVPR-IAFANK 138
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 124 DAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD 183
D ER RGI++ T+ +++ +R +D PGH D+ ++ +D A++V+ A
Sbjct: 76 DWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAK 135
Query: 184 GPMPQTKEHILLAKQVGVPNMVVFLNK 210
G QT++ + + + P M F+NK
Sbjct: 136 GVEAQTRKLMDVCRMRATPVM-TFVNK 161
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 3/126 (2%)
Query: 87 NIGTIGHVDHGKXXXXXXXXXXXXXXGN--SAPKKYDEIDAAPEERARGITINTATVEYE 144
NIG I H+D GK + ++D +E+ RGITI +A
Sbjct: 12 NIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA 71
Query: 145 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNM 204
E +D PGH D+ + +DGA+ V+ G PQT+ A GVP
Sbjct: 72 WEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR- 130
Query: 205 VVFLNK 210
+VF+NK
Sbjct: 131 IVFVNK 136
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 3/126 (2%)
Query: 87 NIGTIGHVDHGKXXXXXXXXXXXXXXGN--SAPKKYDEIDAAPEERARGITINTATVEYE 144
NIG + H+D GK + ++D +E+ RGITI +A
Sbjct: 12 NIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA 71
Query: 145 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNM 204
E +D PGH D+ + +DGA+ V+ G PQT+ A GVP
Sbjct: 72 WEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR- 130
Query: 205 VVFLNK 210
+VF+NK
Sbjct: 131 IVFVNK 136
>pdb|3E20|A Chain A, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|D Chain D, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|E Chain E, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|J Chain J, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 201
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 92/204 (45%), Gaps = 23/204 (11%)
Query: 293 PFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEA 352
PF++ + + GT+ G++E G+IK V ++ + +T T E ++ + +
Sbjct: 7 PFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEE-ISSS 63
Query: 353 MAGDNVGLLLRGVQKADIQRGMVL-AKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYR 411
+ GD V L +RG +D+Q G VL + + T+F+A + +L+ S GY
Sbjct: 64 ICGDQVRLRVRG-DDSDVQTGYVLTSTKNPVHATTRFIAQIAILELP-----SILTTGYS 117
Query: 412 PQFYMRTTDVTGRVSSIMNDKDEESK-------MVMPGDRIKMVVELIMPVACE-----Q 459
++ T + +++ D+ ++ G +I +E PV E Q
Sbjct: 118 CVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQ 177
Query: 460 GM-RFAIREGGKTVGAGVIQSIIE 482
M RF +R+ G TV G + I++
Sbjct: 178 YMGRFTLRDQGTTVAVGKVVKILD 201
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 53/126 (42%), Gaps = 3/126 (2%)
Query: 87 NIGTIGHVDHGKXXXXXXXXXXXXXXGN--SAPKKYDEIDAAPEERARGITINTATVEYE 144
NIG I H+D GK + ++D +E+ RGITI +A
Sbjct: 12 NIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA 71
Query: 145 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNM 204
E +D PGH D + +DGA+ V+ G PQT+ A GVP
Sbjct: 72 WEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR- 130
Query: 205 VVFLNK 210
+VF+NK
Sbjct: 131 IVFVNK 136
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 3/126 (2%)
Query: 87 NIGTIGHVDHGKXXXXXXXXXXXXXXGN--SAPKKYDEIDAAPEERARGITINTATVEYE 144
NIG + H+D GK + ++D +E+ RGITI +A
Sbjct: 12 NIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA 71
Query: 145 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNM 204
E +D PGH D + +DGA+ V+ G PQT+ A GVP
Sbjct: 72 WEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR- 130
Query: 205 VVFLNK 210
+VF+NK
Sbjct: 131 IVFVNK 136
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 124 DAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD 183
D E+ RGI++ T+ ++ ++ +D PGHAD+ ++ +D A+ V+ A
Sbjct: 58 DWXELEKQRGISVTTSVXQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAK 117
Query: 184 GPMPQTKEHILLAKQVGVPNMVVFLNK 210
G P+T + + + P + F+NK
Sbjct: 118 GVEPRTIKLXEVCRLRHTP-IXTFINK 143
>pdb|3E1Y|E Chain E, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|F Chain F, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|G Chain G, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|H Chain H, Crystal Structure Of Human Erf1ERF3 COMPLEX
Length = 204
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 22/189 (11%)
Query: 308 GTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQK 367
GTV G++E G+I G+ LV + N V G+ D G+N+ + L+G+++
Sbjct: 19 GTVVLGKLESGSICKGQ--QLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEE 76
Query: 368 ADIQRGMVLAKPGTITPHTK-FLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTT----DVT 422
+I G +L P + + F A + +++ + S GY ++ T ++T
Sbjct: 77 EEILPGFILCDPNNLCHSGRTFDAQIVIIEHK-----SIICPGYNAVLHIHTCIEEVEIT 131
Query: 423 GRVSSIMNDKDEESKM---VMPGDRIKMVVELIMPVAC-------EQGMRFAIREGGKTV 472
+ + E+SK + D++ + C Q RF +R+ GKT+
Sbjct: 132 ALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTI 191
Query: 473 GAGVIQSII 481
G + ++
Sbjct: 192 AIGKVLKLV 200
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 16/120 (13%)
Query: 87 NIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGITINTATVEYETE 146
N+ I HVDHGK + + D +E+ RGITI + + +E
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSE 80
Query: 147 ---------------NRHYAH-VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTK 190
N + +D PGH D+ + DGA++VV +G QT+
Sbjct: 81 MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE 140
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 16/120 (13%)
Query: 87 NIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYDEIDAAPEERARGITINTATVEYETE 146
N+ I HVDHGK + + D +E+ RGITI + + +E
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSE 80
Query: 147 ---------------NRHYAH-VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTK 190
N + +D PGH D+ + DGA++VV +G QT+
Sbjct: 81 MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE 140
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 12/134 (8%)
Query: 87 NIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYD---EIDAAPEERARGITINTA--TV 141
NIG H+D GK + + +D +D +E+ RGITI +A T
Sbjct: 12 NIGISAHIDAGKTTTTERILFYTGV-NHKIGEVHDGAATMDWMEQEQERGITITSAATTA 70
Query: 142 EYETENRHYAH-----VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLA 196
+ + Y +D PGH D+ + +DGA++V G PQ++ A
Sbjct: 71 FWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 130
Query: 197 KQVGVPNMVVFLNK 210
+ VP + F+NK
Sbjct: 131 NKYKVPR-IAFVNK 143
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 12/134 (8%)
Query: 87 NIGTIGHVDHGKXXXXXXXXXXXXXXGNSAPKKYD---EIDAAPEERARGITINTA--TV 141
NIG H+D GK + + +D +D +E+ RGITI +A T
Sbjct: 11 NIGISAHIDAGKTTTTERILFYTGV-NHKIGEVHDGAATMDWMEQEQERGITITSAATTA 69
Query: 142 EYETENRHYAH-----VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLA 196
+ + Y +D PGH D+ + +DGA++V G PQ++ A
Sbjct: 70 FWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 129
Query: 197 KQVGVPNMVVFLNK 210
+ VP + F+NK
Sbjct: 130 NKYKVPR-IAFVNK 142
>pdb|2P8W|S Chain S, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|2P8X|S Chain S, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Z|S Chain S, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
Length = 35
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 21/25 (84%)
Query: 118 KKYDEIDAAPEERARGITINTATVE 142
K Y +ID APEERARGITINTA VE
Sbjct: 11 KDYGDIDKAPEERARGITINTAHVE 35
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 124 DAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD 183
D E+ RGI+I T+ +++ + +D PGH D+ ++ +D ++V+ A
Sbjct: 58 DWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAK 117
Query: 184 GPMPQTKEHILLAKQVGVPNMVVFLNK 210
G +T++ + + + P ++ F+NK
Sbjct: 118 GVEDRTRKLMEVTRLRDTP-ILTFMNK 143
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 124 DAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD 183
D E+ RGI+I T+ +++ + +D PGH D+ ++ +D ++V+ A
Sbjct: 58 DWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAK 117
Query: 184 GPMPQTKEHILLAKQVGVPNMVVFLNK 210
G +T++ + + + P ++ F+NK
Sbjct: 118 GVEDRTRKLMEVTRLRDTP-ILTFMNK 143
>pdb|3DWU|A Chain A, Transition-State Model Conformation Of The Switch I Region
Fitted Into The Cryo-Em Map Of The Eef2.80s.Alf4.Gdp
Complex
Length = 46
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 94 VDHGKXXXXXXXXXXXXXXG-NSAPKKYDEIDAAPEERARGITINT 138
VDHGK N K Y +ID APEERARGITINT
Sbjct: 1 VDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINT 46
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 153 VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 210
+D PGHA + G D ILVV+ DG M QT E I AK VP +V+ +NK
Sbjct: 57 LDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVLAINK 113
>pdb|2HCJ|A Chain A, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
pdb|2HDN|A Chain A, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|C Chain C, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|E Chain E, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|G Chain G, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|I Chain I, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|K Chain K, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 37
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 16/16 (100%)
Query: 83 KPHVNIGTIGHVDHGK 98
KPHVN+GTIGHVDHGK
Sbjct: 2 KPHVNVGTIGHVDHGK 17
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%)
Query: 124 DAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD 183
D PE + T+ T +D PG+ D+V + D A++ VS
Sbjct: 50 DYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEA 109
Query: 184 GPMPQTKEHILLAKQVGVPNMVV 206
G T+ +A+++G+P MVV
Sbjct: 110 GVQVGTERAWTVAERLGLPRMVV 132
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 153 VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 210
+D PGH D+ + +DGAI+V + G PQ++ A++ VP + F NK
Sbjct: 49 IDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR-IAFANK 105
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 153 VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 210
+D PGH + G A D AIL+V +G PQT+E + + + P VV NK
Sbjct: 75 IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRTP-FVVAANK 131
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 153 VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 210
+D PGH + G A D AIL+V +G PQT+E + + + P VV NK
Sbjct: 75 IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANK 131
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 330 GLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQ--KADIQRGMVLAKPGTITPHTK 387
G ++ R+ T EM + + EA AG LL V K I RG +A+ I+ H
Sbjct: 122 GRRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAIDRGYDIAQ---ISRHLD 178
Query: 388 FLAIV----YVLKKEEGGRHSPFFAG 409
F++++ + ++ G HSP FAG
Sbjct: 179 FISLLTYDFHGAWRQTVGHHSPLFAG 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,817,055
Number of Sequences: 62578
Number of extensions: 442569
Number of successful extensions: 1475
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1173
Number of HSP's gapped (non-prelim): 129
length of query: 482
length of database: 14,973,337
effective HSP length: 103
effective length of query: 379
effective length of database: 8,527,803
effective search space: 3232037337
effective search space used: 3232037337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)